Citrus Sinensis ID: 016804
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 382 | 2.2.26 [Sep-21-2011] | |||||||
| Q9AT00 | 345 | Protein TRIGALACTOSYLDIAC | yes | no | 0.798 | 0.884 | 0.728 | 1e-137 | |
| P30769 | 347 | Probable ribonucleotide t | yes | no | 0.638 | 0.703 | 0.320 | 1e-33 | |
| P63357 | 359 | Probable ribonucleotide t | yes | no | 0.638 | 0.679 | 0.324 | 1e-33 | |
| P63358 | 359 | Probable ribonucleotide t | yes | no | 0.638 | 0.679 | 0.324 | 1e-33 | |
| P14788 | 344 | Sulfate/thiosulfate impor | no | no | 0.547 | 0.607 | 0.365 | 3e-31 | |
| Q9MUN1 | 348 | Sulfate/thiosulfate impor | N/A | no | 0.534 | 0.586 | 0.352 | 3e-31 | |
| Q7AH43 | 348 | Fe(3+) ions import ATP-bi | N/A | no | 0.549 | 0.603 | 0.379 | 6e-31 | |
| Q9K876 | 357 | Sulfate/thiosulfate impor | yes | no | 0.536 | 0.574 | 0.381 | 7e-31 | |
| Q9G4F5 | 350 | Sulfate/thiosulfate impor | N/A | no | 0.536 | 0.585 | 0.372 | 1e-30 | |
| O34900 | 259 | L-cystine import ATP-bind | yes | no | 0.547 | 0.806 | 0.362 | 2e-30 |
| >sp|Q9AT00|AB13I_ARATH Protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic OS=Arabidopsis thaliana GN=TGD3 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 486 bits (1252), Expect = e-137, Method: Compositional matrix adjust.
Identities = 247/339 (72%), Positives = 276/339 (81%), Gaps = 34/339 (10%)
Query: 45 QRKVVCACVAPPRDLGTDGFPATKFNDSSKSEN-VNTLFEPEDDGDVLIDCRNVYKSFGE 103
+RKV C C+APP++L D ATKF+ +KS + E+D DVLI+CR+VYKSFGE
Sbjct: 40 RRKVSCCCIAPPQNLDND---ATKFDSLTKSGGGMCKERGLENDSDVLIECRDVYKSFGE 96
Query: 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE 163
KHIL+GVSFKIRHGEAVG+IGPSGTGKSTILKI+AGLLAPDKGEVYIRG+KRAGLISDEE
Sbjct: 97 KHILKGVSFKIRHGEAVGVIGPSGTGKSTILKIMAGLLAPDKGEVYIRGKKRAGLISDEE 156
Query: 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL 223
ISGLRIGLVFQSAALFDSL+VRENVGFLLYE SKM + QISELV + LAAVGLKGVE+RL
Sbjct: 157 ISGLRIGLVFQSAALFDSLSVRENVGFLLYERSKMSENQISELVTQTLAAVGLKGVENRL 216
Query: 224 PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKG 283
PSELSGGMKKRVALARS+IFD TKE +EPEVLLYDEPTAGLDPIASTVVEDLIRSVH
Sbjct: 217 PSELSGGMKKRVALARSLIFDTTKEVIEPEVLLYDEPTAGLDPIASTVVEDLIRSVHMTD 276
Query: 284 ENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRL 343
E+ + PG IASY+VVTHQHSTI+RAVD RL
Sbjct: 277 EDAVGKPGKIASYLVVTHQHSTIQRAVD------------------------------RL 306
Query: 344 IFLYEGKIVWQGMTHEFTSSSNPIVQQFASGSLEGPIRY 382
+FLYEGKIVWQGMTHEFT+S+NPIVQQFA+GSL+GPIRY
Sbjct: 307 LFLYEGKIVWQGMTHEFTTSTNPIVQQFATGSLDGPIRY 345
|
ATPase transporter involved in lipid transfer from the endoplasmic reticulum (ER) to plastids, and necessary for thylakoids formation. Arabidopsis thaliana (taxid: 3702) |
| >sp|P30769|MKL_MYCLE Probable ribonucleotide transport ATP-binding protein mkl OS=Mycobacterium leprae (strain TN) GN=mkl PE=3 SV=2 | Back alignment and function description |
|---|
Score = 144 bits (363), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 146/293 (49%), Gaps = 49/293 (16%)
Query: 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149
V I+ + + KSFG I V+ I GE ++GPSGTGKS LK + GLL P++G +
Sbjct: 14 VAIEVKGLTKSFGSSRIWEDVTLDIPAGEVSVLLGPSGTGKSVFLKSLIGLLRPERGSIL 73
Query: 150 IRGRKRAGLISDE--EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELV 207
I G + E EI L G++FQ ALF S+ + +N F L E++K ++ +I ++V
Sbjct: 74 IDGTDIIECSAKELYEIRTL-FGVLFQDGALFGSMNLYDNTAFPLREHTKKKESEIRDIV 132
Query: 208 KENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPI 267
E L VGL G E + P E+SGGM+KR LAR+++ D P+++L DEP +GLDP+
Sbjct: 133 MEKLQLVGLGGDEKKFPGEISGGMRKRAGLARALVLD-------PQIILCDEPDSGLDPV 185
Query: 268 ASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVII 327
+ + LI ++ + + A+ ++VTH + R D + +
Sbjct: 186 RTAYLSQLIMDINAQID---------ATILIVTHNVNIARTVPDNMGM------------ 224
Query: 328 LGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFASGSLEGPI 380
L+ +V G +S P+V+QF +G GPI
Sbjct: 225 ------------------LFRKHLVMFGPREVLLTSDEPVVRQFLNGRRIGPI 259
|
Not known, could be involved in the transport of ribonucleotides. Mycobacterium leprae (taxid: 1769) |
| >sp|P63357|MKL_MYCTU Probable ribonucleotide transport ATP-binding protein mkl OS=Mycobacterium tuberculosis GN=mkl PE=3 SV=1 | Back alignment and function description |
|---|
Score = 144 bits (363), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 95/293 (32%), Positives = 146/293 (49%), Gaps = 49/293 (16%)
Query: 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149
V I+ + KSFG I V+ I GE ++GPSGTGKS LK + GLL P++G +
Sbjct: 26 VSIEVNGLTKSFGSSRIWEDVTLTIPAGEVSVLLGPSGTGKSVFLKSLIGLLRPERGSII 85
Query: 150 IRGRKRAGLISDE--EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELV 207
I G + E EI L G++FQ ALF S+ + +N F L E++K ++ +I ++V
Sbjct: 86 IDGTDIIECSAKELYEIRTL-FGVLFQDGALFGSMNLYDNTAFPLREHTKKKESEIRDIV 144
Query: 208 KENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPI 267
E LA VGL G E + P E+SGGM+KR LAR+++ D P+++L DEP +GLDP+
Sbjct: 145 MEKLALVGLGGDEKKFPGEISGGMRKRAGLARALVLD-------PQIILCDEPDSGLDPV 197
Query: 268 ASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVII 327
+ + LI ++ + + A+ ++VTH + R D + +
Sbjct: 198 RTAYLSQLIMDINAQID---------ATILIVTHNINIARTVPDNMGM------------ 236
Query: 328 LGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFASGSLEGPI 380
L+ +V G +S P+V+QF +G GPI
Sbjct: 237 ------------------LFRKHLVMFGPREVLLTSDEPVVRQFLNGRRIGPI 271
|
Not known, could be involved in the transport of ribonucleotides. Mycobacterium tuberculosis (taxid: 1773) |
| >sp|P63358|MKL_MYCBO Probable ribonucleotide transport ATP-binding protein mkl OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=mkl PE=3 SV=1 | Back alignment and function description |
|---|
Score = 144 bits (363), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 95/293 (32%), Positives = 146/293 (49%), Gaps = 49/293 (16%)
Query: 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149
V I+ + KSFG I V+ I GE ++GPSGTGKS LK + GLL P++G +
Sbjct: 26 VSIEVNGLTKSFGSSRIWEDVTLTIPAGEVSVLLGPSGTGKSVFLKSLIGLLRPERGSII 85
Query: 150 IRGRKRAGLISDE--EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELV 207
I G + E EI L G++FQ ALF S+ + +N F L E++K ++ +I ++V
Sbjct: 86 IDGTDIIECSAKELYEIRTL-FGVLFQDGALFGSMNLYDNTAFPLREHTKKKESEIRDIV 144
Query: 208 KENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPI 267
E LA VGL G E + P E+SGGM+KR LAR+++ D P+++L DEP +GLDP+
Sbjct: 145 MEKLALVGLGGDEKKFPGEISGGMRKRAGLARALVLD-------PQIILCDEPDSGLDPV 197
Query: 268 ASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVII 327
+ + LI ++ + + A+ ++VTH + R D + +
Sbjct: 198 RTAYLSQLIMDINAQID---------ATILIVTHNINIARTVPDNMGM------------ 236
Query: 328 LGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFASGSLEGPI 380
L+ +V G +S P+V+QF +G GPI
Sbjct: 237 ------------------LFRKHLVMFGPREVLLTSDEPVVRQFLNGRRIGPI 271
|
Not known, could be involved in the transport of ribonucleotides. Mycobacterium bovis (taxid: 1765) |
| >sp|P14788|CYSA_SYNE7 Sulfate/thiosulfate import ATP-binding protein CysA OS=Synechococcus elongatus (strain PCC 7942) GN=cysA PE=2 SV=1 | Back alignment and function description |
|---|
Score = 136 bits (342), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 122/230 (53%), Gaps = 21/230 (9%)
Query: 87 DGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG 146
D V I V K FG ++ V + G V ++GPSG+GKST+L++IAGL PD G
Sbjct: 4 DKAVGIQVSQVSKQFGSFQAVKDVDLTVETGSLVALLGPSGSGKSTLLRLIAGLEQPDSG 63
Query: 147 EVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISEL 206
+++ GR ++E + +IG VFQ ALF LTVR+N+ F L E K E++
Sbjct: 64 RIFLTGRD----ATNESVRDRQIGFVFQHYALFKHLTVRKNIAFGL-ELRKHTKEKVRAR 118
Query: 207 VKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDP 266
V+E L V L G+ DR PS+LSGG ++RVALAR++ +V+P+VLL DEP LD
Sbjct: 119 VEELLELVQLTGLGDRYPSQLSGGQRQRVALARAL-------AVQPQVLLLDEPFGALDA 171
Query: 267 IASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLF 316
+ +R +H + + V VTH D++ +
Sbjct: 172 KVRKDLRSWLRKLHDEVH---------VTTVFVTHDQEEAMEVADQIVVM 212
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Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system. Synechococcus elongatus (strain PCC 7942) (taxid: 1140) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 2 EC: 5 |
| >sp|Q9MUN1|CYSA_MESVI Sulfate/thiosulfate import ATP-binding protein CysA OS=Mesostigma viride GN=cysA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 136 bits (342), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 80/227 (35%), Positives = 125/227 (55%), Gaps = 23/227 (10%)
Query: 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149
+LID N+ K FG L ++ +I+ G + ++GPSG+GKST+L+IIAGL PD+G ++
Sbjct: 3 ILID--NISKKFGNFQALNHINLEIKSGSIIALLGPSGSGKSTLLRIIAGLDTPDEGTIW 60
Query: 150 IRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKE 209
I G+ +G I IG VFQ+ ALF ++TV +N+ F L E ++ IS V +
Sbjct: 61 ISGKNASGY----SIQSRNIGFVFQNYALFKNMTVYDNIAFGL-ELRRISFNDISRKVNK 115
Query: 210 NLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAS 269
L V L+ + R P++LSGG ++R+ALAR++ ++EP+VLL DEP LD
Sbjct: 116 LLELVQLQNLGHRYPAQLSGGQRQRIALARAL-------AIEPKVLLLDEPFGALDARVR 168
Query: 270 TVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLF 316
+ +R +H K + ++VTH D + +F
Sbjct: 169 KNLRAWLRDLHNKFS---------ITTIIVTHDQQEAMEIADEIVVF 206
|
Part of the ABC transporter complex involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system. Mesostigma viride (taxid: 41882) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 2 EC: 5 |
| >sp|Q7AH43|FBPC_ECO57 Fe(3+) ions import ATP-binding protein FbpC OS=Escherichia coli O157:H7 GN=fbpC PE=3 SV=2 | Back alignment and function description |
|---|
Score = 135 bits (339), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 88/232 (37%), Positives = 130/232 (56%), Gaps = 22/232 (9%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
++ RNV K FG ++ ++ I G+ V ++GPSG GK+TIL+++AGL P +G+++I
Sbjct: 6 FVELRNVTKRFGSNTVIDNINLTIPQGQMVTLLGPSGCGKTTILRLVAGLEKPSEGQIFI 65
Query: 151 RGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKEN 210
G ++ I I +VFQS ALF +++ ENVG+ L R E + + VKE
Sbjct: 66 DGED----VTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVSRSE-VKQRVKEA 120
Query: 211 LAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAST 270
LA V L+G EDR ++SGG ++RVALAR++I ++P+VLL+DEP + LD
Sbjct: 121 LAMVDLEGFEDRYVDQISGGQQQRVALARALI-------LKPKVLLFDEPLSNLDANLRR 173
Query: 271 VVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHI 322
+ D IR + K+ NI S + VTH S AV L GHI
Sbjct: 174 SMRDKIRELQKQ--------FNITS-LYVTHDQSEA-FAVSDTVLVMNKGHI 215
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Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system. Escherichia coli O157:H7 (taxid: 83334) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 3 EC: 0 |
| >sp|Q9K876|CYSA_BACHD Sulfate/thiosulfate import ATP-binding protein CysA OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=cysA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 135 bits (339), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 87/228 (38%), Positives = 133/228 (58%), Gaps = 23/228 (10%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
I +NV KSFG L ++ I GE V ++GPSG+GK+++L+IIAGL A D+G++Y
Sbjct: 3 IVIQNVSKSFGSFQALADINLSIETGELVALLGPSGSGKTSLLRIIAGLEAADQGDIYFH 62
Query: 152 GRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGF-LLYENSKMR--DEQISELVK 208
K ++ + ++G VFQ ALF +TV +N+ + L + K R ++I+E V+
Sbjct: 63 KDK----VTQTHAASRQVGFVFQHYALFPHMTVADNISYGLRVKPRKERPSKKEIAEKVR 118
Query: 209 ENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIA 268
E LA V L+G++DR P++LSGG ++R+ALAR++ +VEP+VLL DEP LD
Sbjct: 119 ELLALVKLEGMDDRYPAQLSGGQRQRIALARAL-------AVEPKVLLLDEPFGALD--- 168
Query: 269 STVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLF 316
+ V +DL + + K L N + S V VTH DR+ +
Sbjct: 169 AKVRKDLRKWLRK-----LHNEFQVTS-VFVTHDQEEALDVSDRVVVM 210
|
Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system. Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) (taxid: 272558) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 2 EC: 5 |
| >sp|Q9G4F5|CYSA_CUCSA Sulfate/thiosulfate import ATP-binding protein cysA OS=Cucumis sativus GN=CYSA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 85/228 (37%), Positives = 121/228 (53%), Gaps = 23/228 (10%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
I+ RN+ K FG+ L VS I GE V ++GPSG GK+T+L+IIAGL + D G V
Sbjct: 3 IEVRNLSKRFGQFRALNDVSLHIETGELVALLGPSGCGKTTLLRIIAGLESADNGSVLFA 62
Query: 152 GRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLL---YENSKMRDEQISELVK 208
G + ++ ++G VFQ ALF +TV ENV F L + + + ++QI V
Sbjct: 63 GEDATSV----DVRQRQVGFVFQHYALFKHMTVFENVAFGLRVKHRSQRPSEDQIQRKVH 118
Query: 209 ENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIA 268
+ L V L + DR P++LSGG ++R+ALAR++ +VEP VLL DEP LD
Sbjct: 119 DLLGLVQLDWLADRYPAQLSGGQRQRIALARAL-------AVEPRVLLLDEPFGALDAKV 171
Query: 269 STVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLF 316
+ +R +H + N+AS V VTH DR+ L
Sbjct: 172 RKELRRWLRRLH--------DELNVAS-VFVTHDQEEALEVADRVVLM 210
|
Part of the ABC transporter complex involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system. Cucumis sativus (taxid: 3659) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 2 EC: 5 |
| >sp|O34900|TCYN_BACSU L-cystine import ATP-binding protein TcyN OS=Bacillus subtilis (strain 168) GN=tcyN PE=1 SV=1 | Back alignment and function description |
|---|
Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/229 (36%), Positives = 126/229 (55%), Gaps = 20/229 (8%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
+I+ +N++K FG H+L+G++ +R GE V IIGPSG+GK+T L+ + L PD+G + I
Sbjct: 1 MIEIKNIHKQFGIHHVLKGINLTVRKGEVVTIIGPSGSGKTTFLRCLNLLERPDEGIISI 60
Query: 151 RGRK-RAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELV 207
+ S +E+ LR +VFQ LF TV ENV L KMR + +
Sbjct: 61 HDKVINCRFPSKKEVHWLRKQTAMVFQQYHLFAHKTVIENVMEGLTIARKMRKQDAYAVA 120
Query: 208 KENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPI 267
+ L VGL+ + PS+LSGG K+RV +AR++ ++ P+VLL+DEPTA LDP
Sbjct: 121 ENELRKVGLQDKLNAYPSQLSGGQKQRVGIARAL-------AIHPDVLLFDEPTAALDPE 173
Query: 268 ASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLF 316
V +++ + K G A+ +VVTH+ RR D++
Sbjct: 174 LVGEVLEVMLEIVKTG----------ATMIVVTHEMEFARRVSDQVVFM 212
|
Part of the ABC transporter complex TcyJKLMN involved in L-cystine import. Responsible for energy coupling to the transport system (Probable). Is also involved in cystathionine, djenkolate, and S-methylcysteine transport. Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 382 | ||||||
| 255543114 | 357 | abc transporter, putative [Ricinus commu | 0.916 | 0.980 | 0.726 | 1e-154 | |
| 449449615 | 348 | PREDICTED: protein TRIGALACTOSYLDIACYLGL | 0.908 | 0.997 | 0.696 | 1e-143 | |
| 357507681 | 346 | ABC transporter [Medicago truncatula] gi | 0.905 | 1.0 | 0.688 | 1e-142 | |
| 363807172 | 345 | uncharacterized protein LOC100783283 [Gl | 0.895 | 0.991 | 0.677 | 1e-142 | |
| 356531918 | 345 | PREDICTED: protein TRIGALACTOSYLDIACYLGL | 0.895 | 0.991 | 0.680 | 1e-141 | |
| 297735294 | 337 | unnamed protein product [Vitis vinifera] | 0.858 | 0.973 | 0.716 | 1e-141 | |
| 225431009 | 341 | PREDICTED: protein TRIGALACTOSYLDIACYLGL | 0.858 | 0.961 | 0.713 | 1e-140 | |
| 89357201 | 349 | ABC transporter II-like protein [Gossypi | 0.905 | 0.991 | 0.693 | 1e-140 | |
| 297838071 | 338 | ATNAP11 [Arabidopsis lyrata subsp. lyrat | 0.798 | 0.902 | 0.731 | 1e-136 | |
| 18408274 | 345 | protein triGALACTOSYLDIACYLGLYCEROL 3 [A | 0.798 | 0.884 | 0.728 | 1e-135 |
| >gi|255543114|ref|XP_002512620.1| abc transporter, putative [Ricinus communis] gi|223548581|gb|EEF50072.1| abc transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust.
Identities = 279/384 (72%), Positives = 313/384 (81%), Gaps = 34/384 (8%)
Query: 1 MVSLSSSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLG 60
MVSLS GS LFP + S+R + + +NSF YK ++EQRKVVC+C+APPR++
Sbjct: 6 MVSLS--GSTLFPASIAHGSTRFTRFSVWSADTVNSFCYKQRKEQRKVVCSCMAPPRNIS 63
Query: 61 TDGFPATKFNDSSKSENVNTLFEPED--DGDVLIDCRNVYKSFGEKHILRGVSFKIRHGE 118
+D AT++NDS KSE + + EPE+ D D+LI+CR+VYKSFGEKHILRGVSFKIRHGE
Sbjct: 64 SDECSATRYNDSYKSEQLRKVLEPENESDSDILIECRDVYKSFGEKHILRGVSFKIRHGE 123
Query: 119 AVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAAL 178
AVGIIGPSGTGKSTILKI+AGLLAPDKGEVYIRGRKR GLISD+++SGLRIGLVFQSAAL
Sbjct: 124 AVGIIGPSGTGKSTILKIMAGLLAPDKGEVYIRGRKRDGLISDQDLSGLRIGLVFQSAAL 183
Query: 179 FDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALA 238
FDSLTVRENVGFLLYENS MR+EQISELV+E LAAVGLKGVEDRLPSELSGGMKKRVALA
Sbjct: 184 FDSLTVRENVGFLLYENSSMREEQISELVRETLAAVGLKGVEDRLPSELSGGMKKRVALA 243
Query: 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVV 298
RSIIFD TKES+EPEVLLYDEPTAGLDPIASTVVEDLIRSVH K ++ L NPG IASYVV
Sbjct: 244 RSIIFDITKESIEPEVLLYDEPTAGLDPIASTVVEDLIRSVHMKADDELGNPGKIASYVV 303
Query: 299 VTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTH 358
VTHQHSTIRRAVD RL+FLY+GKIVWQGMT
Sbjct: 304 VTHQHSTIRRAVD------------------------------RLLFLYKGKIVWQGMTD 333
Query: 359 EFTSSSNPIVQQFASGSLEGPIRY 382
EFT+SSNPIVQQFASGSL+GPI+Y
Sbjct: 334 EFTTSSNPIVQQFASGSLDGPIKY 357
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449449615|ref|XP_004142560.1| PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic-like [Cucumis sativus] gi|449485367|ref|XP_004157146.1| PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust.
Identities = 264/379 (69%), Positives = 299/379 (78%), Gaps = 32/379 (8%)
Query: 4 LSSSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDG 63
+S SGS+ FPL S SSR +A NSF K K+++R V C C+APP +D
Sbjct: 2 VSVSGSVFFPLTVPSCSSRSRKVAVIDAH--NSFCCKIKDQRRIVACNCIAPPPYFKSDE 59
Query: 64 FPATKFNDSSKSENVNTLFEPEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGII 123
A NDS +SE++++ E +++ DVLI+CRNV+KSFGEKHILRGVSFKIRHGEAVG+I
Sbjct: 60 SSAVNSNDSFRSEHLSSENEDKNESDVLIECRNVHKSFGEKHILRGVSFKIRHGEAVGVI 119
Query: 124 GPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLT 183
GPSGTGKSTILKIIAGLL+PDKGEVYIRGRKR GLI DEE+SGLRIGLVFQSAALFDSLT
Sbjct: 120 GPSGTGKSTILKIIAGLLSPDKGEVYIRGRKRVGLIDDEELSGLRIGLVFQSAALFDSLT 179
Query: 184 VRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIF 243
VR+NVGFLLYENS + ++QISELV ENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIF
Sbjct: 180 VRQNVGFLLYENSSLSEDQISELVTENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIF 239
Query: 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQH 303
DNT++ +EPEVLLYDEPTAGLDPIASTVVEDLIRSVH KGE+ PG IASY+VVTHQH
Sbjct: 240 DNTRKEIEPEVLLYDEPTAGLDPIASTVVEDLIRSVHIKGEDASGKPGKIASYIVVTHQH 299
Query: 304 STIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSS 363
STIRRAVD RL+FLYEGK+VWQGMT EFT+S
Sbjct: 300 STIRRAVD------------------------------RLLFLYEGKVVWQGMTGEFTTS 329
Query: 364 SNPIVQQFASGSLEGPIRY 382
+NPIVQQFASGSL+GPIRY
Sbjct: 330 TNPIVQQFASGSLDGPIRY 348
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357507681|ref|XP_003624129.1| ABC transporter [Medicago truncatula] gi|355499144|gb|AES80347.1| ABC transporter [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust.
Identities = 263/382 (68%), Positives = 299/382 (78%), Gaps = 36/382 (9%)
Query: 1 MVSLSSSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLG 60
MVSLS L P T S S++ N +N F++ + RKV+CAC+APP++
Sbjct: 1 MVSLSIPFFPLTPQKTTSPSTKFQPKNNY----LNPFHHN--KHHRKVICACIAPPQNFK 54
Query: 61 TDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAV 120
+ +FN SSKSE +N + EDD DVLI+CR+VYKSFGEK IL GVSFKIRHGEAV
Sbjct: 55 AQDSSSIQFNGSSKSEQLNKARDHEDDSDVLIECRDVYKSFGEKKILNGVSFKIRHGEAV 114
Query: 121 GIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFD 180
GIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKR GLISD+EISGLRIGLVFQSAALFD
Sbjct: 115 GIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRDGLISDDEISGLRIGLVFQSAALFD 174
Query: 181 SLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARS 240
SLTVRENVGFLLYE+S M +E+ISELVKE LAAVGLKGVE+RLPSELSGGMKKRVALARS
Sbjct: 175 SLTVRENVGFLLYEHSSMPEEEISELVKETLAAVGLKGVENRLPSELSGGMKKRVALARS 234
Query: 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVT 300
IIFD TK+S+EPEVLLYDEPTAGLDPIASTVVEDLIRSVH KG + L PGNI+SYVVVT
Sbjct: 235 IIFDTTKDSIEPEVLLYDEPTAGLDPIASTVVEDLIRSVHIKGRDALGKPGNISSYVVVT 294
Query: 301 HQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEF 360
HQHSTI+RA+D RL+FL++GK+VW+GMTHEF
Sbjct: 295 HQHSTIKRAID------------------------------RLLFLHKGKLVWEGMTHEF 324
Query: 361 TSSSNPIVQQFASGSLEGPIRY 382
T+S+NPIVQQFASGSL+GPI+Y
Sbjct: 325 TTSTNPIVQQFASGSLDGPIKY 346
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|363807172|ref|NP_001242603.1| uncharacterized protein LOC100783283 [Glycine max] gi|255638918|gb|ACU19761.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 509 bits (1312), Expect = e-142, Method: Compositional matrix adjust.
Identities = 261/385 (67%), Positives = 300/385 (77%), Gaps = 43/385 (11%)
Query: 1 MVSLSSSGSLLFPLATKSVSSRLSTLANSGKKPINSFYY---KAKEEQRKVVCACVAPPR 57
MVSLS++ P K+ S+R+ P SF Y ++ + RKVVCAC+APP+
Sbjct: 1 MVSLSTTP--FLPFTAKNASTRI--------PPPTSFSYSKQRSNRDPRKVVCACIAPPQ 50
Query: 58 DLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHG 117
+ + A FN SSKSE ++T + EDD DVLI+CR+VYKSFGEK IL GVSFKI+HG
Sbjct: 51 NFKSQDSSAIHFNGSSKSEQLSTARDHEDDSDVLIECRDVYKSFGEKKILNGVSFKIKHG 110
Query: 118 EAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAA 177
EAVGIIGPSGTGKST+LKIIAGLLAPDKGEVYIRG+KR GL+SD++ISGLRIGLVFQSAA
Sbjct: 111 EAVGIIGPSGTGKSTVLKIIAGLLAPDKGEVYIRGKKRVGLVSDDDISGLRIGLVFQSAA 170
Query: 178 LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVAL 237
LFDSLTVRENVGFLLYE+S M ++QISELV E LAAVGLKGVEDRLPSELSGGMKKRVAL
Sbjct: 171 LFDSLTVRENVGFLLYEHSSMSEDQISELVMETLAAVGLKGVEDRLPSELSGGMKKRVAL 230
Query: 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYV 297
ARSII D TKES+EPEVLLYDEPTAGLDPIASTVVEDLIRSVH KG++ PGNI+SYV
Sbjct: 231 ARSIICDTTKESIEPEVLLYDEPTAGLDPIASTVVEDLIRSVHIKGQDARGKPGNISSYV 290
Query: 298 VVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMT 357
VVTHQHSTI+RA+D RL+FL++GKIVW+GMT
Sbjct: 291 VVTHQHSTIKRAID------------------------------RLLFLHKGKIVWEGMT 320
Query: 358 HEFTSSSNPIVQQFASGSLEGPIRY 382
HEFT+S+NPIVQQFASGSL+GPIRY
Sbjct: 321 HEFTTSTNPIVQQFASGSLDGPIRY 345
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356531918|ref|XP_003534523.1| PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 509 bits (1310), Expect = e-141, Method: Compositional matrix adjust.
Identities = 262/385 (68%), Positives = 298/385 (77%), Gaps = 43/385 (11%)
Query: 1 MVSLSSSGSLLFPLATKSVSSRLSTLANSGKKPINSFY---YKAKEEQRKVVCACVAPPR 57
MVSLS++ P K+ S+R P NSF ++ + RKVVCAC+APP+
Sbjct: 1 MVSLSTTP--FLPFTAKNASTRFP--------PPNSFSRNKQRSNRDHRKVVCACIAPPQ 50
Query: 58 DLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHG 117
+ + A FN SSKSE ++T ++ EDD DVLI+CR+VYKSFGEK IL GVSFKIRHG
Sbjct: 51 NFKSQDSSAINFNGSSKSEQLSTAWDHEDDSDVLIECRDVYKSFGEKKILNGVSFKIRHG 110
Query: 118 EAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAA 177
EAVGIIGPSGTGKST+LKIIAGLLAPDKGEVYIRG+KR GL+SD++ISGLRIGLVFQSAA
Sbjct: 111 EAVGIIGPSGTGKSTVLKIIAGLLAPDKGEVYIRGKKRVGLVSDDDISGLRIGLVFQSAA 170
Query: 178 LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVAL 237
LFDSLTVRENVGFLLYE+S M ++QISELV E LAAVGLKGVEDRLPSELSGGMKKRVAL
Sbjct: 171 LFDSLTVRENVGFLLYEHSSMSEDQISELVTETLAAVGLKGVEDRLPSELSGGMKKRVAL 230
Query: 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYV 297
ARSII D T+ES EPEVLLYDEPTAGLDPIASTVVEDLIRSVH KG + PGNIASYV
Sbjct: 231 ARSIICDTTEESKEPEVLLYDEPTAGLDPIASTVVEDLIRSVHIKGRDARGKPGNIASYV 290
Query: 298 VVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMT 357
VVTHQHSTI+RA+D RL+FL++GKIVW+GMT
Sbjct: 291 VVTHQHSTIKRAID------------------------------RLLFLHKGKIVWEGMT 320
Query: 358 HEFTSSSNPIVQQFASGSLEGPIRY 382
HEFT+S+NPIVQQFASGSL+GPIRY
Sbjct: 321 HEFTTSTNPIVQQFASGSLDGPIRY 345
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297735294|emb|CBI17656.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust.
Identities = 258/360 (71%), Positives = 290/360 (80%), Gaps = 32/360 (8%)
Query: 23 LSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLF 82
L T A G + +++ ++R +VCAC+APPR+L TDGF ATKFNDSS +N +
Sbjct: 10 LKTFAAPGNA--KALNWRSHGQKRNIVCACMAPPRNLRTDGFAATKFNDSSHLKNPSVDG 67
Query: 83 EPEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA 142
+ EDD DVL++CR+VYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKST+LKIIAGLLA
Sbjct: 68 DREDDSDVLVECRDVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTVLKIIAGLLA 127
Query: 143 PDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQ 202
PDKGEV IRGR+R GLISD+EISGLRIGLVFQSAALFDSLTVRENVGFLLYENS M ++Q
Sbjct: 128 PDKGEVLIRGRRRHGLISDQEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSSMPEDQ 187
Query: 203 ISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA 262
I ELV E+LAAVGLKGVE+RLPSELSGGMKKRVALARSIIFD TK+++EPEVLLYDEPTA
Sbjct: 188 IHELVTESLAAVGLKGVEERLPSELSGGMKKRVALARSIIFDTTKDAIEPEVLLYDEPTA 247
Query: 263 GLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHI 322
GLDPIASTVVEDLIRSVH K E+ G IASYVVVTHQHSTIRRAVD
Sbjct: 248 GLDPIASTVVEDLIRSVHLKEEDAPGKLGKIASYVVVTHQHSTIRRAVD----------- 296
Query: 323 DVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFASGSLEGPIRY 382
RL+FLY+GKIVW+GMT EFT+S+NPIVQQFASGSL+GPIRY
Sbjct: 297 -------------------RLLFLYDGKIVWEGMTDEFTTSTNPIVQQFASGSLDGPIRY 337
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225431009|ref|XP_002272680.1| PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 505 bits (1301), Expect = e-140, Method: Compositional matrix adjust.
Identities = 259/363 (71%), Positives = 294/363 (80%), Gaps = 35/363 (9%)
Query: 20 SSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVN 79
S+R + N+ K +N +++ ++R +VCAC+APPR+L TDGF ATKFNDSS +N +
Sbjct: 14 SNRFAAPGNA--KALN---WRSHGQKRNIVCACMAPPRNLRTDGFAATKFNDSSHLKNPS 68
Query: 80 TLFEPEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAG 139
+ EDD DVL++CR+VYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKST+LKIIAG
Sbjct: 69 VDGDREDDSDVLVECRDVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTVLKIIAG 128
Query: 140 LLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMR 199
LLAPDKGEV IRGR+R GLISD+EISGLRIGLVFQSAALFDSLTVRENVGFLLYENS M
Sbjct: 129 LLAPDKGEVLIRGRRRHGLISDQEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSSMP 188
Query: 200 DEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDE 259
++QI ELV E+LAAVGLKGVE+RLPSELSGGMKKRVALARSIIFD TK+++EPEVLLYDE
Sbjct: 189 EDQIHELVTESLAAVGLKGVEERLPSELSGGMKKRVALARSIIFDTTKDAIEPEVLLYDE 248
Query: 260 PTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIF 319
PTAGLDPIASTVVEDLIRSVH K E+ G IASYVVVTHQHSTIRRAVD
Sbjct: 249 PTAGLDPIASTVVEDLIRSVHLKEEDAPGKLGKIASYVVVTHQHSTIRRAVD-------- 300
Query: 320 GHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFASGSLEGP 379
RL+FLY+GKIVW+GMT EFT+S+NPIVQQFASGSL+GP
Sbjct: 301 ----------------------RLLFLYDGKIVWEGMTDEFTTSTNPIVQQFASGSLDGP 338
Query: 380 IRY 382
IRY
Sbjct: 339 IRY 341
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|89357201|gb|ABD72483.1| ABC transporter II-like protein [Gossypium barbadense] | Back alignment and taxonomy information |
|---|
Score = 503 bits (1295), Expect = e-140, Method: Compositional matrix adjust.
Identities = 267/385 (69%), Positives = 298/385 (77%), Gaps = 39/385 (10%)
Query: 1 MVSLSSSGSLL--FPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPP-R 57
M S + S SLL FP+ T S+R L GK+ + K+EQR V+CAC+APP +
Sbjct: 1 MTSATFSSSLLGSFPVVT---STRHCDL---GKERSKFCCFNEKKEQRNVICACMAPPTK 54
Query: 58 DLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHG 117
+LG D F TKF +SSK N + + E+D DVLI+CRNVYKSFGEKHILRGVSFKIRHG
Sbjct: 55 NLGRDEFHGTKFTESSKYGNFSKEVKHENDSDVLIECRNVYKSFGEKHILRGVSFKIRHG 114
Query: 118 EAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAA 177
EAVGIIGPSGTGKSTILKIIAGLL+PDKGEVYIRG+KR GLI D+EISGLRIGLVFQSAA
Sbjct: 115 EAVGIIGPSGTGKSTILKIIAGLLSPDKGEVYIRGKKRMGLIGDDEISGLRIGLVFQSAA 174
Query: 178 LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVAL 237
LFDSLTVRENVGFLLYENS M DEQIS+LV E LAAVGLKGVE+RLPSELSGGMKKRVAL
Sbjct: 175 LFDSLTVRENVGFLLYENSCMSDEQISQLVTETLAAVGLKGVEERLPSELSGGMKKRVAL 234
Query: 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYV 297
ARSII D +KES+EPEVLLYDEPTAGLDPIASTVVEDLI SVH KGE+ G IASYV
Sbjct: 235 ARSIICDISKESIEPEVLLYDEPTAGLDPIASTVVEDLICSVHTKGEDASGKQGKIASYV 294
Query: 298 VVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMT 357
VVTHQHSTI RAVD RL+FL+EGK+VWQGMT
Sbjct: 295 VVTHQHSTILRAVD------------------------------RLLFLHEGKVVWQGMT 324
Query: 358 HEFTSSSNPIVQQFASGSLEGPIRY 382
EFT+S+NPIV+QFASG+L+GPIRY
Sbjct: 325 EEFTTSTNPIVRQFASGNLDGPIRY 349
|
Source: Gossypium barbadense Species: Gossypium barbadense Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297838071|ref|XP_002886917.1| ATNAP11 [Arabidopsis lyrata subsp. lyrata] gi|297332758|gb|EFH63176.1| ATNAP11 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 489 bits (1260), Expect = e-136, Method: Compositional matrix adjust.
Identities = 248/339 (73%), Positives = 277/339 (81%), Gaps = 34/339 (10%)
Query: 45 QRKVVCACVAPPRDLGTDGFPATKFNDSSKSEN-VNTLFEPEDDGDVLIDCRNVYKSFGE 103
+RKV C C+APP++L D ATKF+ +KS + E E+D DVLI+CR+VYKSFGE
Sbjct: 33 RRKVSCCCIAPPQNLDND---ATKFDSLTKSGGGMRKQRELENDSDVLIECRDVYKSFGE 89
Query: 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE 163
KHIL+GVSFKIRHGEAVG+IGPSGTGKSTILKI+AGLLAPDKGEVYIRG+KRAGLISDEE
Sbjct: 90 KHILKGVSFKIRHGEAVGVIGPSGTGKSTILKIMAGLLAPDKGEVYIRGKKRAGLISDEE 149
Query: 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL 223
ISGLRIGLVFQSAALFDSL+VRENVGFLLYE SKM + QISELV + LAAVGLKGVE+RL
Sbjct: 150 ISGLRIGLVFQSAALFDSLSVRENVGFLLYERSKMSENQISELVTQTLAAVGLKGVENRL 209
Query: 224 PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKG 283
PSELSGGMKKRVALARS+IFD TKE +EPEVLLYDEPTAGLDPIASTVVEDLIRSVH
Sbjct: 210 PSELSGGMKKRVALARSLIFDTTKEVIEPEVLLYDEPTAGLDPIASTVVEDLIRSVHMTD 269
Query: 284 ENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRL 343
E+ + PG IASY+VVTHQHSTI+RAVD RL
Sbjct: 270 EDAVGKPGKIASYLVVTHQHSTIQRAVD------------------------------RL 299
Query: 344 IFLYEGKIVWQGMTHEFTSSSNPIVQQFASGSLEGPIRY 382
+FLYEGKIVWQGMTHEFT+S+NPIVQQFA+GSL+GPIRY
Sbjct: 300 LFLYEGKIVWQGMTHEFTTSTNPIVQQFATGSLDGPIRY 338
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18408274|ref|NP_564850.1| protein triGALACTOSYLDIACYLGLYCEROL 3 [Arabidopsis thaliana] gi|75333028|sp|Q9AT00.1|AB13I_ARATH RecName: Full=Protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic; AltName: Full=ABC transporter I family member 13; Short=ABC transporter ABCI.13; Short=AtABCI13; AltName: Full=Non-intrinsic ABC protein 11; Flags: Precursor gi|13605495|gb|AAK32741.1|AF361573_1 At1g65410/T8F5_19 [Arabidopsis thaliana] gi|20334770|gb|AAM16246.1| At1g65410/T8F5_19 [Arabidopsis thaliana] gi|332196249|gb|AEE34370.1| protein triGALACTOSYLDIACYLGLYCEROL 3 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 486 bits (1252), Expect = e-135, Method: Compositional matrix adjust.
Identities = 247/339 (72%), Positives = 276/339 (81%), Gaps = 34/339 (10%)
Query: 45 QRKVVCACVAPPRDLGTDGFPATKFNDSSKSEN-VNTLFEPEDDGDVLIDCRNVYKSFGE 103
+RKV C C+APP++L D ATKF+ +KS + E+D DVLI+CR+VYKSFGE
Sbjct: 40 RRKVSCCCIAPPQNLDND---ATKFDSLTKSGGGMCKERGLENDSDVLIECRDVYKSFGE 96
Query: 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE 163
KHIL+GVSFKIRHGEAVG+IGPSGTGKSTILKI+AGLLAPDKGEVYIRG+KRAGLISDEE
Sbjct: 97 KHILKGVSFKIRHGEAVGVIGPSGTGKSTILKIMAGLLAPDKGEVYIRGKKRAGLISDEE 156
Query: 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL 223
ISGLRIGLVFQSAALFDSL+VRENVGFLLYE SKM + QISELV + LAAVGLKGVE+RL
Sbjct: 157 ISGLRIGLVFQSAALFDSLSVRENVGFLLYERSKMSENQISELVTQTLAAVGLKGVENRL 216
Query: 224 PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKG 283
PSELSGGMKKRVALARS+IFD TKE +EPEVLLYDEPTAGLDPIASTVVEDLIRSVH
Sbjct: 217 PSELSGGMKKRVALARSLIFDTTKEVIEPEVLLYDEPTAGLDPIASTVVEDLIRSVHMTD 276
Query: 284 ENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRL 343
E+ + PG IASY+VVTHQHSTI+RAVD RL
Sbjct: 277 EDAVGKPGKIASYLVVTHQHSTIQRAVD------------------------------RL 306
Query: 344 IFLYEGKIVWQGMTHEFTSSSNPIVQQFASGSLEGPIRY 382
+FLYEGKIVWQGMTHEFT+S+NPIVQQFA+GSL+GPIRY
Sbjct: 307 LFLYEGKIVWQGMTHEFTTSTNPIVQQFATGSLDGPIRY 345
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 382 | ||||||
| TAIR|locus:2206275 | 345 | ABCI13 "ATP-binding cassette I | 0.717 | 0.794 | 0.777 | 9.1e-126 | |
| TIGR_CMR|SPO_2672 | 249 | SPO_2672 "ABC transporter, ATP | 0.544 | 0.835 | 0.414 | 4.7e-44 | |
| TIGR_CMR|GSU_1227 | 292 | GSU_1227 "ABC transporter, ATP | 0.583 | 0.763 | 0.405 | 5.9e-42 | |
| UNIPROTKB|Q48EC1 | 269 | PSPPH_4145 "Toluene tolerance | 0.481 | 0.684 | 0.411 | 1.3e-38 | |
| UNIPROTKB|Q87WU6 | 269 | PSPTO_4447 "Toluene tolerance | 0.481 | 0.684 | 0.411 | 2.8e-38 | |
| UNIPROTKB|Q606P6 | 275 | MCA1969 "ABC transporter, ATP- | 0.492 | 0.683 | 0.403 | 1.5e-37 | |
| TIGR_CMR|GSU_0816 | 248 | GSU_0816 "ABC transporter, ATP | 0.468 | 0.721 | 0.433 | 3e-37 | |
| TIGR_CMR|SO_3954 | 272 | SO_3954 "ABC transporter, ATP- | 0.507 | 0.713 | 0.413 | 3.1e-37 | |
| UNIPROTKB|P63357 | 359 | mkl "Probable ribonucleotide t | 0.575 | 0.612 | 0.360 | 1.3e-36 | |
| TIGR_CMR|CPS_4536 | 267 | CPS_4536 "ABC transporter, ATP | 0.476 | 0.681 | 0.395 | 1.3e-36 |
| TAIR|locus:2206275 ABCI13 "ATP-binding cassette I13" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1055 (376.4 bits), Expect = 9.1e-126, Sum P(2) = 9.1e-126
Identities = 217/279 (77%), Positives = 240/279 (86%)
Query: 45 QRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEP-EDDGDVLIDCRNVYKSFGE 103
+RKV C C+APP++L D ATKF+ +KS E+D DVLI+CR+VYKSFGE
Sbjct: 40 RRKVSCCCIAPPQNLDND---ATKFDSLTKSGGGMCKERGLENDSDVLIECRDVYKSFGE 96
Query: 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE 163
KHIL+GVSFKIRHGEAVG+IGPSGTGKSTILKI+AGLLAPDKGEVYIRG+KRAGLISDEE
Sbjct: 97 KHILKGVSFKIRHGEAVGVIGPSGTGKSTILKIMAGLLAPDKGEVYIRGKKRAGLISDEE 156
Query: 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL 223
ISGLRIGLVFQSAALFDSL+VRENVGFLLYE SKM + QISELV + LAAVGLKGVE+RL
Sbjct: 157 ISGLRIGLVFQSAALFDSLSVRENVGFLLYERSKMSENQISELVTQTLAAVGLKGVENRL 216
Query: 224 PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKG 283
PSELSGGMKKRVALARS+IFD TKE +EPEVLLYDEPTAGLDPIASTVVEDLIRSVH
Sbjct: 217 PSELSGGMKKRVALARSLIFDTTKEVIEPEVLLYDEPTAGLDPIASTVVEDLIRSVHMTD 276
Query: 284 ENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHI 322
E+ + PG IASY+VVTHQHSTI+RAVDRL LF G I
Sbjct: 277 EDAVGKPGKIASYLVVTHQHSTIQRAVDRL-LFLYEGKI 314
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| TIGR_CMR|SPO_2672 SPO_2672 "ABC transporter, ATP-binding protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 411 (149.7 bits), Expect = 4.7e-44, Sum P(2) = 4.7e-44
Identities = 94/227 (41%), Positives = 137/227 (60%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
+I NV+K+FG +L+G++ ++ G ++ IIG SGTGKS LK + GL+ PD G++Y+
Sbjct: 1 MIRMENVHKAFGPNRVLQGMNLEVPRGTSMVIIGGSGTGKSVALKCVLGLIRPDSGKIYV 60
Query: 151 RGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRD-EQISELVKE 209
G+ A D + R G++FQ ALFDSL V +NV F L S R ++ E+ E
Sbjct: 61 DGKDAADT-GDRDAFLARFGMLFQGGALFDSLPVWQNVAFRLLRGSLKRPTDEAREIAIE 119
Query: 210 NLAAVGLK-GVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIA 268
L VGLK V DRLP+ELSGGM+KRV LAR+I + EPE++ +DEPT GLDPI
Sbjct: 120 KLRRVGLKPDVADRLPAELSGGMQKRVGLARAI-------AAEPEIIFFDEPTTGLDPIM 172
Query: 269 STVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCL 315
+ V+ +LIR + E G A+ + +TH +++R D + +
Sbjct: 173 AGVINELIREIVT--EMG-------ATAMTITHDMTSVRAIADNVAM 210
|
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| TIGR_CMR|GSU_1227 GSU_1227 "ABC transporter, ATP-binding protein" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 400 (145.9 bits), Expect = 5.9e-42, Sum P(2) = 5.9e-42
Identities = 97/239 (40%), Positives = 137/239 (57%)
Query: 86 DDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDK 145
D V I N+ K FGEKH+L+ V+ I GE IIGPSGTGKS +L+ I L PD
Sbjct: 42 DTRGVSIRIENLNKYFGEKHVLKDVNLAINAGETFCIIGPSGTGKSVLLRHIVKLDRPDS 101
Query: 146 GEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISE 205
GE++I G + S R +VFQS+ALF+SLTV ENVG L E ++ +I E
Sbjct: 102 GEIFIDGHPVFVNAGKDTPSDYRYSMVFQSSALFNSLTVGENVGLWLREKRICKEHRIRE 161
Query: 206 LVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
+++E LA VGL+ E SELSGGMKKRVA+ARS+ ++ P+++LYDEPTA LD
Sbjct: 162 IIREKLAMVGLENTEQLKTSELSGGMKKRVAIARSL-------AMNPDLILYDEPTAELD 214
Query: 266 PIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDV 324
P+ + + + I + + +N + ++VTH + DR+ + +DV
Sbjct: 215 PVTTDELANTILKLKETTKN---------TTIIVTHDLNFALYVSDRIAMMHDGRIVDV 264
|
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| UNIPROTKB|Q48EC1 PSPPH_4145 "Toluene tolerance ABC transporter, ATP-binding protein, putative" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)] | Back alignment and assigned GO terms |
|---|
Score = 349 (127.9 bits), Expect = 1.3e-38, Sum P(2) = 1.3e-38
Identities = 79/192 (41%), Positives = 117/192 (60%)
Query: 87 DGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG 146
D ++ + V G + I V +I G+ GI+GPSG GK+T+L+++ L P +G
Sbjct: 4 DDAYAVELKGVSFKRGTRSIFNNVDIRIPRGKVTGIMGPSGCGKTTLLRLMGAQLRPSEG 63
Query: 147 EVYIRGRKRAGLI-SDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISE 205
+V++ G+ L SD + ++G++FQS ALF L V ENV F L ++++ +E I +
Sbjct: 64 QVWVNGQNLPELSRSDLFDARKQMGVLFQSGALFTDLDVFENVAFPLRVHTELPEEMIRD 123
Query: 206 LVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
+V L AVGL+G + +P ELSGGMK+RVALAR+I D P++L+YDEP G D
Sbjct: 124 IVLLKLQAVGLRGAVELMPDELSGGMKRRVALARAIALD-------PQILMYDEPFVGQD 176
Query: 266 PIASTVVEDLIR 277
PIA V+ LIR
Sbjct: 177 PIAMGVLVRLIR 188
|
|
| UNIPROTKB|Q87WU6 PSPTO_4447 "Toluene tolerance ABC transporter, ATP-binding protein, putative" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)] | Back alignment and assigned GO terms |
|---|
Score = 346 (126.9 bits), Expect = 2.8e-38, Sum P(2) = 2.8e-38
Identities = 79/192 (41%), Positives = 116/192 (60%)
Query: 87 DGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG 146
D ++ + V G + I V +I G+ GI+GPSG GK+T+L+++ L P +G
Sbjct: 4 DDAYAVELKGVSFKRGTRSIFNNVDIRIPRGKVTGIMGPSGCGKTTLLRLMGAQLRPSEG 63
Query: 147 EVYIRGRKRAGLI-SDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISE 205
+V + G+ L SD + ++G++FQS ALF L V ENV F L ++++ +E I +
Sbjct: 64 QVLVNGQNLPELSRSDLFDARKQMGVLFQSGALFTDLDVFENVAFPLRVHTELPEEMIRD 123
Query: 206 LVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
+V L AVGL+G + +P ELSGGMK+RVALAR+I D P++L+YDEP G D
Sbjct: 124 IVLLKLQAVGLRGAVELMPDELSGGMKRRVALARAIALD-------PQILMYDEPFVGQD 176
Query: 266 PIASTVVEDLIR 277
PIA V+ LIR
Sbjct: 177 PIAMGVLVRLIR 188
|
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| UNIPROTKB|Q606P6 MCA1969 "ABC transporter, ATP-binding family protein" [Methylococcus capsulatus str. Bath (taxid:243233)] | Back alignment and assigned GO terms |
|---|
Score = 350 (128.3 bits), Expect = 1.5e-37, Sum P(2) = 1.5e-37
Identities = 82/203 (40%), Positives = 120/203 (59%)
Query: 82 FEPEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL 141
F+P D L+ R + S + I + I G+ I+GPSGTGK+T+L+++ G L
Sbjct: 3 FQPSDT-PALVSIRGLSFSRNGRKIFDNIDLDIPRGKITAIMGPSGTGKTTLLRLVGGQL 61
Query: 142 APDKGEVYIRGRK--RAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSK 197
PD G V + G R GL +E+ LR +G++FQS AL L+V ENV F L E+++
Sbjct: 62 RPDSGTVRVAGINVHRLGL---DELYALRKRMGMLFQSGALLTDLSVYENVAFPLREHTR 118
Query: 198 MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLY 257
+ + I LV L AVGL+G D +P++LSGGM +RVALAR+I+ D P +++Y
Sbjct: 119 LPESMIRTLVLMKLEAVGLRGARDLMPAQLSGGMARRVALARAIVLD-------PMMIMY 171
Query: 258 DEPTAGLDPIASTVVEDLIRSVH 280
DEP G DPI+ V+ LI ++
Sbjct: 172 DEPFTGQDPISMGVLVQLIHDLN 194
|
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| TIGR_CMR|GSU_0816 GSU_0816 "ABC transporter, ATP-binding protein" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
Identities = 82/189 (43%), Positives = 126/189 (66%)
Query: 96 NVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKR 155
+V+KSFG + +L G++ +I G+ +IGPSG GKS +LK + GL+ PD+GEV++ G +
Sbjct: 6 DVHKSFGSQVVLDGLTMEIPEGKITAVIGPSGEGKSVLLKHMIGLMKPDRGEVFVEG-EN 64
Query: 156 AGLISDEEISGL--RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAA 213
+ +++ + + G++FQ+AALFDSLTV ENV F L E + + +IS+ V + L
Sbjct: 65 ITTMRRYQMNRVWEKFGMLFQNAALFDSLTVFENVAFPLEEKTHLSRSEISDRVHDALEH 124
Query: 214 VGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVE 273
VGL+ V+ + P ELSGGMKKRV LAR+++ + P ++L+DEPT GLDPI +
Sbjct: 125 VGLRNVDKKFPDELSGGMKKRVGLARALLLN-------PRIILFDEPTTGLDPIICRAIH 177
Query: 274 DLIRSVHKK 282
+LIR H++
Sbjct: 178 ELIRETHER 186
|
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| TIGR_CMR|SO_3954 SO_3954 "ABC transporter, ATP-binding protein, putative" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 351 (128.6 bits), Expect = 3.1e-37, Sum P(2) = 3.1e-37
Identities = 88/213 (41%), Positives = 128/213 (60%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
L++ R++ G++ I +S I G+ I+GPSG GK+T+LK+I G L PD G+V
Sbjct: 8 LVEIRHLGFRRGQRVIYEDISLSIPRGKVTAIMGPSGIGKTTLLKLIGGQLTPDSGQVLF 67
Query: 151 RGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVK 208
G+ S E+ LR + ++FQS ALF + V +NV F L E+S + +E I +V
Sbjct: 68 DGQD-VHAASRNELFELRKRMSMLFQSGALFTDINVFDNVAFALREHSGLPEEIIRTIVL 126
Query: 209 ENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIA 268
L AVGL+G +PSELSGGM++R ALAR+I ++EPE+++YDEP AG DPI+
Sbjct: 127 MKLEAVGLRGAAQLMPSELSGGMQRRAALARAI-------ALEPEMVMYDEPFAGQDPIS 179
Query: 269 STVVEDLIRSVHKKGENGLANPGNIASYVVVTH 301
V+ LIR L++ N+ S VVV+H
Sbjct: 180 MGVLVKLIRE--------LSDALNLTS-VVVSH 203
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| UNIPROTKB|P63357 mkl "Probable ribonucleotide transport ATP-binding protein mkl" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
|---|
Score = 356 (130.4 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
Identities = 88/244 (36%), Positives = 137/244 (56%)
Query: 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149
V I+ + KSFG I V+ I GE ++GPSGTGKS LK + GLL P++G +
Sbjct: 26 VSIEVNGLTKSFGSSRIWEDVTLTIPAGEVSVLLGPSGTGKSVFLKSLIGLLRPERGSII 85
Query: 150 IRGRKRAGLISDE--EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELV 207
I G + E EI L G++FQ ALF S+ + +N F L E++K ++ +I ++V
Sbjct: 86 IDGTDIIECSAKELYEIRTL-FGVLFQDGALFGSMNLYDNTAFPLREHTKKKESEIRDIV 144
Query: 208 KENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPI 267
E LA VGL G E + P E+SGGM+KR LAR+++ D P+++L DEP +GLDP+
Sbjct: 145 MEKLALVGLGGDEKKFPGEISGGMRKRAGLARALVLD-------PQIILCDEPDSGLDPV 197
Query: 268 ASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL-CLFQ----IFGHI 322
+ + LI ++ + + A+ ++VTH + R D + LF+ +FG
Sbjct: 198 RTAYLSQLIMDINAQID---------ATILIVTHNINIARTVPDNMGMLFRKHLVMFGPR 248
Query: 323 DVVI 326
+V++
Sbjct: 249 EVLL 252
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| TIGR_CMR|CPS_4536 CPS_4536 "ABC transporter, ATP-binding protein" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 347 (127.2 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
Identities = 76/192 (39%), Positives = 120/192 (62%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
+++ N+ GE+ I +S I G+ I+GPSG GK+T+L++I G + P+ G ++
Sbjct: 1 MVEIENLTFKRGERVIYDDISLSIPKGKVTAIMGPSGIGKTTLLRLIGGQIKPESGNIFF 60
Query: 151 RGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVK 208
GR L+S ++ +R + ++FQS ALF ++V +N+ F + E++++ + I ++V
Sbjct: 61 AGRN-IPLLSRADLYEVRKDMSMLFQSGALFTEMSVYDNIAFPIREHTQLSEAIIEKIVL 119
Query: 209 ENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIA 268
L AVGL+G PSELSGGM +RVALAR+I D PE++LYDEP AG DPI+
Sbjct: 120 MKLEAVGLRGARHLQPSELSGGMARRVALARAIALD-------PELILYDEPFAGQDPIS 172
Query: 269 STVVEDLIRSVH 280
V+ LIRS++
Sbjct: 173 MGVIVRLIRSLN 184
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9AT00 | AB13I_ARATH | No assigned EC number | 0.7286 | 0.7984 | 0.8840 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.3 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00025111001 | SubName- Full=Chromosome chr4 scaffold_32, whole genome shotgun sequence; (749 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00033530001 | SubName- Full=Chromosome chr5 scaffold_67, whole genome shotgun sequence; (329 aa) | • | • | • | 0.652 | |||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 382 | |||
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 1e-114 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 2e-95 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 1e-58 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 7e-58 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 3e-57 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 3e-56 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 2e-55 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 7e-55 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 4e-54 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 2e-53 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 2e-53 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 3e-53 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 8e-53 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 3e-52 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 6e-51 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 4e-50 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 2e-49 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 4e-49 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 3e-47 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 8e-47 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 1e-46 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 6e-46 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 1e-45 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 6e-45 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 3e-44 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 4e-44 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 1e-43 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 3e-43 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 5e-43 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 6e-43 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 1e-42 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 1e-42 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 2e-42 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 3e-42 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 4e-42 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 5e-42 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 2e-41 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 1e-40 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 4e-40 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 1e-39 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 2e-39 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 3e-39 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 7e-39 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 2e-38 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 4e-38 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 6e-38 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-37 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-37 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-37 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 7e-37 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 9e-37 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 9e-37 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 1e-36 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 2e-36 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 2e-36 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 3e-36 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 3e-36 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 3e-36 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 3e-36 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 5e-36 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 8e-36 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 2e-35 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 2e-35 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 4e-35 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 4e-35 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 8e-35 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 9e-35 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 1e-34 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 2e-34 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 2e-34 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 3e-34 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 4e-34 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 1e-33 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 2e-33 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 2e-33 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 2e-33 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 3e-33 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 5e-33 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 5e-33 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 6e-33 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 7e-33 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 8e-33 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 2e-32 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 2e-32 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 2e-32 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 3e-32 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 3e-32 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 3e-32 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 4e-32 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 4e-32 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 6e-32 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 7e-32 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 1e-31 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 2e-31 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 2e-31 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 2e-31 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 3e-31 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 4e-31 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 6e-31 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 1e-30 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 2e-30 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 2e-30 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 3e-30 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 8e-30 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 9e-30 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 1e-29 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 1e-29 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 2e-29 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 3e-29 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 4e-29 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 4e-29 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 7e-29 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 7e-29 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 9e-29 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 9e-29 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-28 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 1e-28 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-28 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 3e-28 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 4e-28 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 4e-28 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 4e-28 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 5e-28 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 5e-28 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 6e-28 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 7e-28 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 8e-28 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 8e-28 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 8e-28 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 9e-28 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-27 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 2e-27 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 2e-27 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 2e-27 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 3e-27 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 3e-27 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 4e-27 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 5e-27 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 6e-27 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 8e-27 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 8e-27 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 1e-26 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 2e-26 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 2e-26 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 2e-26 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 2e-26 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 2e-26 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 2e-26 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 3e-26 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 3e-26 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 3e-26 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 7e-26 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 7e-26 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 1e-25 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 1e-25 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 1e-25 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 2e-25 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 2e-25 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 2e-25 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 2e-25 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 2e-25 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 3e-25 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 3e-25 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 3e-25 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 3e-25 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 4e-25 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 5e-25 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 5e-25 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 7e-25 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 7e-25 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 8e-25 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 1e-24 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 1e-24 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 1e-24 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 1e-24 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 2e-24 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 2e-24 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 2e-24 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-24 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 3e-24 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 5e-24 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 6e-24 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 7e-24 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 9e-24 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 1e-23 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 1e-23 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 2e-23 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 2e-23 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 2e-23 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 3e-23 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 3e-23 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 3e-23 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 4e-23 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 4e-23 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 5e-23 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 5e-23 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 5e-23 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 6e-23 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 8e-23 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 8e-23 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 9e-23 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-22 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 1e-22 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 2e-22 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 2e-22 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 2e-22 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 3e-22 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 3e-22 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 3e-22 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 4e-22 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 4e-22 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 5e-22 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 5e-22 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 5e-22 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 6e-22 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 6e-22 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 9e-22 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 1e-21 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 2e-21 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 3e-21 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 4e-21 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 4e-21 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 5e-21 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 5e-21 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 6e-21 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 6e-21 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 6e-21 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 2e-20 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 2e-20 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 3e-20 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 3e-20 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 4e-20 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 5e-20 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 8e-20 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 1e-19 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 2e-19 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 2e-19 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 2e-19 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 3e-19 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 3e-19 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 4e-19 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 4e-19 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 4e-19 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 5e-19 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 5e-19 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 6e-19 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 7e-19 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 7e-19 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 2e-18 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 2e-18 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 2e-18 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 3e-18 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 8e-18 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 9e-18 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 9e-18 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-17 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 2e-17 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 2e-17 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 3e-17 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 5e-17 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 6e-17 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 6e-17 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 7e-17 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 8e-17 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 1e-16 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 1e-16 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 2e-16 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 2e-16 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 3e-16 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 6e-16 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 8e-16 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 9e-16 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 2e-15 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 2e-15 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 2e-15 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 2e-15 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 2e-15 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 3e-15 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 6e-15 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 1e-14 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 3e-14 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 4e-14 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 4e-14 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 6e-14 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 9e-14 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-13 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 1e-13 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 2e-13 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 2e-13 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 2e-13 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 4e-13 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 6e-13 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 1e-12 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 1e-12 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 1e-12 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 1e-12 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 2e-12 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 3e-12 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 4e-12 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 4e-12 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 4e-12 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 4e-12 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 5e-12 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 5e-12 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 8e-12 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 9e-12 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 9e-12 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 2e-11 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 3e-11 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 7e-11 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 7e-11 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 8e-11 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 9e-11 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 1e-10 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 1e-10 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 1e-10 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 2e-10 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 3e-10 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 4e-10 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 6e-10 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 7e-10 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 9e-10 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 9e-10 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 2e-09 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 2e-09 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 2e-09 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 2e-09 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 2e-09 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 3e-09 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 4e-09 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 5e-09 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 5e-09 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 6e-09 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 7e-09 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 1e-08 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-08 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 2e-08 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 4e-08 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 5e-08 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 9e-08 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 3e-07 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 3e-07 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 3e-07 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 3e-07 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 5e-07 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 7e-07 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 1e-06 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 2e-06 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 3e-06 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 4e-06 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 5e-06 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 5e-06 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 6e-06 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 9e-06 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 1e-05 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-05 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 2e-05 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 2e-05 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 1e-04 | |
| PRK15093 | 330 | PRK15093, PRK15093, antimicrobial peptide ABC tran | 1e-04 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 2e-04 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 2e-04 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 3e-04 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 0.001 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 0.001 | |
| PRK15177 | 213 | PRK15177, PRK15177, Vi polysaccharide export ATP-b | 0.002 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 331 bits (852), Expect = e-114
Identities = 131/281 (46%), Positives = 171/281 (60%), Gaps = 47/281 (16%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
I+ R + KSFG + +L+GV +R GE + IIGPSG+GKST+L++I GLL PD GEV I
Sbjct: 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLID 60
Query: 152 GRKRAGLISDEEIS-GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKEN 210
G +GL E R+G++FQS ALFDSLTV ENV F L E++++ +E+I E+V E
Sbjct: 61 GEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEK 120
Query: 211 LAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAST 270
L AVGL+G ED P+ELSGGMKKRVALAR++ D PE+LLYDEPTAGLDPIAS
Sbjct: 121 LEAVGLRGAEDLYPAELSGGMKKRVALARALALD-------PELLLYDEPTAGLDPIASG 173
Query: 271 VVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGA 330
V++DLIRS+ K E GL + ++VTH T DR+
Sbjct: 174 VIDDLIRSLKK--ELGL-------TSIMVTHDLDTAFAIADRI----------------- 207
Query: 331 VAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQF 371
LY+GKIV +G E +S +P+V+QF
Sbjct: 208 -------------AVLYDGKIVAEGTPEELRASDDPLVRQF 235
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 285 bits (731), Expect = 2e-95
Identities = 116/301 (38%), Positives = 164/301 (54%), Gaps = 48/301 (15%)
Query: 84 PEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP 143
+ LI+ R V KSFG++ IL GV + GE + I+G SG+GKST+L++I GLL P
Sbjct: 1 MSASPEPLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRP 60
Query: 144 DKGEVYIRGRKRAGLISDEEIS-GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQ 202
DKGE+ I G L +E R+G++FQ ALF SLTV ENV F L E++K+ +
Sbjct: 61 DKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESL 120
Query: 203 ISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPT 261
I ELV L VGL+G D PSELSGGM+KRVALAR+I D PE+L DEPT
Sbjct: 121 IRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALD-------PELLFLDEPT 173
Query: 262 AGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGH 321
+GLDPI++ V+++LIR ++ + ++VTH ++ D
Sbjct: 174 SGLDPISAGVIDELIRELNDALG---------LTVIMVTHDLDSLLTIAD---------- 214
Query: 322 IDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFASGSLEGPIR 381
R+ L +GK++ +G E +S +P V+QF +G +GPI
Sbjct: 215 --------------------RVAVLADGKVIAEGTPEELLASDDPWVRQFFNGIRDGPIP 254
Query: 382 Y 382
+
Sbjct: 255 F 255
|
Length = 263 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 189 bits (482), Expect = 1e-58
Identities = 73/207 (35%), Positives = 113/207 (54%), Gaps = 21/207 (10%)
Query: 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154
+ + K++G L +S + GE + ++GPSG GK+T+L++IAGL PD GE+ I GR
Sbjct: 4 KGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGR- 62
Query: 155 RAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAV 214
++ IG+VFQ ALF LTV EN+ F L + + +I V+E L V
Sbjct: 63 ---DVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGL-KLRGVPKAEIRARVRELLELV 118
Query: 215 GLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVED 274
GL+G+ +R P ELSGG ++RVALAR++ EP +LL DEP + LD + +
Sbjct: 119 GLEGLLNRYPHELSGGQQQRVALARALA-------REPSLLLLDEPLSALDAKLREELRE 171
Query: 275 LIRSVHKKGENGLANPGNIASYVVVTH 301
++ + ++ + + VTH
Sbjct: 172 ELKELQRELG---------ITTIYVTH 189
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 188 bits (480), Expect = 7e-58
Identities = 77/194 (39%), Positives = 106/194 (54%), Gaps = 15/194 (7%)
Query: 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV 148
L++ V KSFG +L ++ + GE V I+GPSG GKST+L++IAGL P GEV
Sbjct: 1 MALLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60
Query: 149 YIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVK 208
+ GR G G IG VFQ AL LTV +NV L K + E E K
Sbjct: 61 LLDGRPVTG-------PGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEAR-ERAK 112
Query: 209 ENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIA 268
E L VGL G ED+ P +LSGGM++RVA+AR++ P++LL DEP LD +
Sbjct: 113 ELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATR-------PKLLLLDEPFGALDALT 165
Query: 269 STVVEDLIRSVHKK 282
++D + + ++
Sbjct: 166 REELQDELLRLWEE 179
|
Length = 248 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 185 bits (473), Expect = 3e-57
Identities = 85/233 (36%), Positives = 119/233 (51%), Gaps = 36/233 (15%)
Query: 92 IDCRNVYKSFG----EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE 147
++ RNV K++G L +S + GE V ++GPSG GKST+L+IIAGL P GE
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 148 VYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELV 207
V + G G G G VFQ AL LTV +NV L E + + E
Sbjct: 61 VLVDGEPVTG-------PGPDRGYVFQQDALLPWLTVLDNVALGL-ELQGVPKAEARERA 112
Query: 208 KENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPI 267
+E L VGL G E+ P +LSGGM++RVALAR++ V+P+VLL DEP + LD +
Sbjct: 113 EELLELVGLSGFENAYPHQLSGGMRQRVALARALA-------VDPDVLLLDEPFSALDAL 165
Query: 268 -ASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAV---DRLCLF 316
+ E+L+ + G + ++VTH I AV DR+ +
Sbjct: 166 TREQLQEELLDIWRETG----------KTVLLVTHD---IDEAVFLADRVVVL 205
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 183 bits (468), Expect = 3e-56
Identities = 92/284 (32%), Positives = 147/284 (51%), Gaps = 53/284 (18%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
+I+ +N+ KSFG+K +L+G+S + GE V IIGPSG+GKST+L+ + GL PD G + +
Sbjct: 2 MIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITV 61
Query: 151 RGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVK 208
G + ++I LR +G+VFQ LF LTV ENV + K+ + E
Sbjct: 62 DGED---VGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKAL 118
Query: 209 ENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIA 268
E L VGL D P++LSGG ++RVA+AR++ +++P+V+L+DEPT+ LDP
Sbjct: 119 ELLEKVGLADKADAYPAQLSGGQQQRVAIARAL-------AMDPKVMLFDEPTSALDPEL 171
Query: 269 STVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIIL 328
V D+++ + ++G + ++VTH+ R D
Sbjct: 172 VGEVLDVMKDLAEEG----------MTMIIVTHEMGFAREVAD----------------- 204
Query: 329 GAVAPDKEVFFIYRLIFLYEGKIVWQGMTHE-FTSSSNPIVQQF 371
R+IF+ +GKI+ +G E F + + +QF
Sbjct: 205 -------------RVIFMDQGKIIEEGPPEEFFDNPKSERTRQF 235
|
Length = 240 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 185 bits (472), Expect = 2e-55
Identities = 81/211 (38%), Positives = 119/211 (56%), Gaps = 20/211 (9%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
++ RNV KSFG+ + +S I+ GE V ++GPSG GK+T+L++IAG P GE+ +
Sbjct: 5 ALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILL 64
Query: 151 RGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKEN 210
G I+D IG+VFQS ALF +TV ENV F L K++ +I V+E
Sbjct: 65 DGED----ITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEA 120
Query: 211 LAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAST 270
L VGL+G DR P +LSGG ++RVALAR+++ EP+VLL DEP + LD
Sbjct: 121 LELVGLEGFADRKPHQLSGGQQQRVALARALVP-------EPKVLLLDEPLSALDAKLRE 173
Query: 271 VVEDLIRSVHKKGENGLANPGNIASYVVVTH 301
+ ++ + ++ ++V VTH
Sbjct: 174 QMRKELKELQRELG---------ITFVYVTH 195
|
Length = 352 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 179 bits (457), Expect = 7e-55
Identities = 85/228 (37%), Positives = 123/228 (53%), Gaps = 26/228 (11%)
Query: 92 IDCRNVYKSFG----EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE 147
I+ +N+ K++G + L+GVS I GE V I+GPSG+GKST+L I+ GL P GE
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 148 VYIRGRKRAGLISDEEISGLR---IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQIS 204
V + G + L S++E++ R IG VFQS L LT ENV L + + ++
Sbjct: 61 VRVDGTDISKL-SEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPL-LLAGVPKKERR 118
Query: 205 ELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGL 264
E +E L VGL + PSELSGG ++RVA+AR++ +P+++L DEPT L
Sbjct: 119 ERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALA-------NDPKIILADEPTGNL 171
Query: 265 DPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDR 312
D V +L+R ++K+ + VVVTH A DR
Sbjct: 172 DSETGKEVMELLRELNKEAGTTI---------VVVTHDPELAEYA-DR 209
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 177 bits (451), Expect = 4e-54
Identities = 84/225 (37%), Positives = 131/225 (58%), Gaps = 23/225 (10%)
Query: 95 RNVYKSF--GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG 152
+N+ S+ G + L +S I+ GE V I+GP+G+GKST+L+++ GLL P GEV + G
Sbjct: 3 KNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDG 62
Query: 153 RKRAGLISDEEISGLRIGLVFQSAAL-FDSLTVRENVGFLLYENSKMRDEQISELVKENL 211
+ L S +E+ ++GLVFQ+ F TV E V F L EN + +E+I E V+E L
Sbjct: 63 KDLTKL-SLKELRR-KVGLVFQNPDDQFFGPTVEEEVAFGL-ENLGLPEEEIEERVEEAL 119
Query: 212 AAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTV 271
VGL+G+ DR P LSGG K+RVA+A ++ +++P++LL DEPTAGLDP
Sbjct: 120 ELVGLEGLRDRSPFTLSGGQKQRVAIA-GVL------AMDPDILLLDEPTAGLDPAGRRE 172
Query: 272 VEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLF 316
+ +L++ + +G + ++VTH + DR+ +
Sbjct: 173 LLELLKKLKAEG----------KTIIIVTHDLDLLLELADRVIVL 207
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 176 bits (448), Expect = 2e-53
Identities = 80/220 (36%), Positives = 123/220 (55%), Gaps = 28/220 (12%)
Query: 91 LIDCRNVYKSFG----EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG 146
+I+ +NV K +G + L+ V+ +I GE V I+GPSG+GKST+L ++ GL P G
Sbjct: 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSG 60
Query: 147 EVYIRGRKRAGLISDEEISGLR---IGLVFQSAALFDSLTVRENVGF-LLYENSKMRDEQ 202
EV I G+ L S++E++ LR IG VFQ+ L LTV ENV LL + +
Sbjct: 61 EVLINGKDLTKL-SEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLI--AGKSAGR 117
Query: 203 ISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPT 261
+E L +GL+ + + PSELSGG ++RVA+AR++I P+++L DEPT
Sbjct: 118 RKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALI-------NNPKIILADEPT 170
Query: 262 AGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTH 301
LD + V +L+R ++K+ + ++VTH
Sbjct: 171 GNLDSKTAKEVLELLRELNKERGKTI---------IMVTH 201
|
Length = 226 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 174 bits (443), Expect = 2e-53
Identities = 78/222 (35%), Positives = 108/222 (48%), Gaps = 51/222 (22%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
++ +NV K +G+K +L VS I GE V ++GPSG+GKST+L+ IAGL PD G + I
Sbjct: 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILID 60
Query: 152 GRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENL 211
G L + RIG+VFQ ALF LTV EN+ L
Sbjct: 61 GEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGL------------------- 101
Query: 212 AAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTV 271
SGG ++RVALAR++ ++P+VLL DEPT+ LDPI
Sbjct: 102 ----------------SGGQQQRVALARALA-------MDPDVLLLDEPTSALDPITRRE 138
Query: 272 VEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313
V L++S+ + G+ V+VTH R DR+
Sbjct: 139 VRALLKSLQA--QLGIT-------VVLVTHDLDEAARLADRV 171
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 175 bits (446), Expect = 3e-53
Identities = 82/232 (35%), Positives = 122/232 (52%), Gaps = 26/232 (11%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL-----APDKG 146
I+ R++ +G+KH L+ +S I GE +IGPSG GKST+L+++ L APD+G
Sbjct: 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEG 60
Query: 147 EVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISEL 206
EV + G+ L D R+G+VFQ F ++ +NV + L + E++ E
Sbjct: 61 EVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFP-GSIYDNVAYGLRLHGIKLKEELDER 119
Query: 207 VKENLAAVGLKG-VEDRL-PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGL 264
V+E L L V+DRL LSGG ++R+ LAR++ EPEVLL DEPT+ L
Sbjct: 120 VEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALA-------NEPEVLLLDEPTSAL 172
Query: 265 DPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLF 316
DPI++ +E+LI + K+ + V+VTH R DR
Sbjct: 173 DPISTAKIEELIAELKKE-----------YTIVIVTHNMQQAARVADRTAFL 213
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 174 bits (443), Expect = 8e-53
Identities = 88/236 (37%), Positives = 131/236 (55%), Gaps = 28/236 (11%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
I+ +N++KSFG+ H+L+G+ ++ GE V IIGPSG+GKST+L+ I L PD G + I
Sbjct: 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIID 60
Query: 152 GRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKE 209
G K + I+ LR +G+VFQ LF LTV EN+ + M + E E
Sbjct: 61 GLKL--TDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALE 118
Query: 210 NLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAS 269
L VGL D P++LSGG ++RVA+AR++ ++ P+V+L+DEPT+ LDP
Sbjct: 119 LLEKVGLADKADAYPAQLSGGQQQRVAIARAL-------AMNPKVMLFDEPTSALDPELV 171
Query: 270 TVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIF---GHI 322
V D+++ + ++G + VVVTH+ R DR+ IF G I
Sbjct: 172 GEVLDVMKDLAEEG----------MTMVVVTHEMGFAREVADRV----IFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 175 bits (446), Expect = 3e-52
Identities = 88/273 (32%), Positives = 139/273 (50%), Gaps = 57/273 (20%)
Query: 91 LIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149
+I+ RN+ K +G +K L GVSF++ GE G++GP+G GK+T+LKI+AGLL P GE+
Sbjct: 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEIL 63
Query: 150 IRGRKRAGLISDEEISGLR-IGLVFQSAALFDSLTVRENVGFL--LYENSKMRDEQISEL 206
+ G + E R IG V Q +L+ LTVREN+ F LY + E+ E
Sbjct: 64 VLGYD----VVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLY---GLSKEEAEER 116
Query: 207 VKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDP 266
++E L GL+ ++ LSGGMK+R+++A +++ +PE+L+ DEPT+GLDP
Sbjct: 117 IEELLELFGLEDKANKKVRTLSGGMKQRLSIALALL-------HDPELLILDEPTSGLDP 169
Query: 267 IASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVI 326
+ + +L+R LA G + ++++ + LC D
Sbjct: 170 ESRREIWELLRE--------LAKEGGVT--ILLSTHIL---EEAEELC--------D--- 205
Query: 327 ILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHE 359
R+I L +GKI+ +G E
Sbjct: 206 ---------------RVIILNDGKIIAEGTPEE 223
|
Length = 293 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 173 bits (440), Expect = 6e-51
Identities = 79/210 (37%), Positives = 118/210 (56%), Gaps = 21/210 (10%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
++ +NV KSFG +L+ V+ I GE V ++GPSG GKST+L++IAGL P GE+ I
Sbjct: 4 LELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILID 63
Query: 152 GRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENL 211
GR ++D I +VFQ+ AL+ +TV EN+ F L + + +I + VKE
Sbjct: 64 GRD----VTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGL-KLRGVPKAEIDKRVKEVA 118
Query: 212 AAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTV 271
+GL+ + +R P +LSGG ++RVALAR+++ +P+V L DEP + LD
Sbjct: 119 KLLGLEHLLNRKPLQLSGGQRQRVALARALV-------RKPKVFLLDEPLSNLDA----K 167
Query: 272 VEDLIRSVHKKGENGLANPGNIASYVVVTH 301
+ L+RS KK L + VTH
Sbjct: 168 LRVLMRSEIKKLHERLGTT-----TIYVTH 192
|
Length = 338 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 167 bits (426), Expect = 4e-50
Identities = 85/229 (37%), Positives = 126/229 (55%), Gaps = 22/229 (9%)
Query: 91 LIDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149
+I+ N+ + K L+ VS +I GE V +IGP+G+GKST+LK++ GLL P GEV
Sbjct: 3 MIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVL 62
Query: 150 IRGRKRAGLISDEEISGLRIGLVFQSAA--LFDSLTVRENVGFLLYENSKMRDEQISELV 207
+ G + S E+ ++GLVFQ+ LF TV + V F L EN + E+I E V
Sbjct: 63 VDGLDTSSEKSLLELRQ-KVGLVFQNPDDQLFGP-TVEDEVAFGL-ENLGLPREEIEERV 119
Query: 208 KENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPI 267
E L VGL+ + DR P LSGG K+RVA+A + + PE+LL DEPTAGLDP
Sbjct: 120 AEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLA-------MGPEILLLDEPTAGLDPK 172
Query: 268 ASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLF 316
+ +L++ + ++G + ++VTH + DR+ +
Sbjct: 173 GRRELLELLKKLKEEGGKTI---------IIVTHDLELVLEYADRVVVL 212
|
Length = 235 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 169 bits (430), Expect = 2e-49
Identities = 85/223 (38%), Positives = 119/223 (53%), Gaps = 18/223 (8%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
I NV K FG L +S I+ GE V ++GPSG GKST+L+IIAGL PD G + +
Sbjct: 3 IRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLN 62
Query: 152 GRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDE-QISELVKEN 210
GR + S+ + ++G VFQ ALF +TV +N+ F L + E +I V+E
Sbjct: 63 GRVLFDV-SNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEEL 121
Query: 211 LAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAST 270
L V L+G+ DR P++LSGG ++RVALAR+ +VEP+VLL DEP LD
Sbjct: 122 LRLVQLEGLADRYPAQLSGGQRQRVALARA-------LAVEPKVLLLDEPFGALDAKVRK 174
Query: 271 VVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313
+ +R +H G+ + V VTH DR+
Sbjct: 175 ELRRWLRKLHD--RLGV-------TTVFVTHDQEEALELADRV 208
|
Length = 345 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 165 bits (420), Expect = 4e-49
Identities = 78/228 (34%), Positives = 114/228 (50%), Gaps = 27/228 (11%)
Query: 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154
R + K FG L VSF +R GE G+IGP+G GK+T+ +I+G L P G V G
Sbjct: 4 RGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGED 63
Query: 155 RAGLISDEEISGLRIGLVFQSAALFDSLTVRENV---------GFLLYENSKMRDEQISE 205
GL EI+ L IG FQ LF LTV ENV LL ++ + + E
Sbjct: 64 ITGLPPH-EIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARE 122
Query: 206 LVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
+E L VGL + DR ELS G ++R+ +AR++ +P++LL DEP AGL+
Sbjct: 123 RAEELLERVGLADLADRPAGELSYGQQRRLEIARALA-------TDPKLLLLDEPAAGLN 175
Query: 266 PIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313
P + + +LIR + ++G + ++V H + DR+
Sbjct: 176 PEETEELAELIRELRERG----------ITVLLVEHDMDVVMSLADRV 213
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 160 bits (407), Expect = 3e-47
Identities = 72/174 (41%), Positives = 100/174 (57%), Gaps = 12/174 (6%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
I+ NV K +G L GVS I+ GE ++GPSG GK+T+L++IAG P GE+ +
Sbjct: 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLD 60
Query: 152 GRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENL 211
G+ L + + VFQ+ ALF LTV EN+ F L K+ +I E V E L
Sbjct: 61 GKDITNLPPHKR----PVNTVFQNYALFPHLTVFENIAFGL-RLKKLPKAEIKERVAEAL 115
Query: 212 AAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
V L+G +R PS+LSGG ++RVA+AR+++ EP+VLL DEP LD
Sbjct: 116 DLVQLEGYANRKPSQLSGGQQQRVAIARALVN-------EPKVLLLDEPLGALD 162
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 157 bits (399), Expect = 8e-47
Identities = 68/222 (30%), Positives = 112/222 (50%), Gaps = 57/222 (25%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
I+ RN+ K +G+K L +S + GE G++GP+G GK+T++KII GLL PD GE+ +
Sbjct: 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVL 60
Query: 152 GRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENL 211
G + + E RIG + + +L+++LTVREN+
Sbjct: 61 G---KDIKKEPEEVKRRIGYLPEEPSLYENLTVRENL----------------------- 94
Query: 212 AAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTV 271
+LSGGMK+R+ALA++++ +PE+L+ DEPT+GLDP +
Sbjct: 95 --------------KLSGGMKQRLALAQALL-------HDPELLILDEPTSGLDPESRRE 133
Query: 272 VEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313
+L+R + K+G + ++ +H R DR+
Sbjct: 134 FWELLRELKKEG----------KTILLSSHILEEAERLCDRV 165
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 158 bits (402), Expect = 1e-46
Identities = 85/231 (36%), Positives = 126/231 (54%), Gaps = 24/231 (10%)
Query: 91 LIDCRNVYKSFGEK----HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG 146
+I+ +NV K FG+ L+ VS + GE GIIG SG GKST+++ I GL P G
Sbjct: 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSG 60
Query: 147 EVYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQIS 204
V + G L S +E+ R IG++FQ L S TV ENV L E + + +I
Sbjct: 61 SVLVDGTDLTLL-SGKELRKARRRIGMIFQHFNLLSSRTVFENVALPL-EIAGVPKAEIE 118
Query: 205 ELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGL 264
E V E L VGL+ D P++LSGG K+RV +AR++ + P+VLL DE T+ L
Sbjct: 119 ERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARAL-------ANNPKVLLCDEATSAL 171
Query: 265 DPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCL 315
DP + + L+R +++ E GL + V++TH+ ++R DR+ +
Sbjct: 172 DPETTQSILALLRDINR--ELGL-------TIVLITHEMEVVKRICDRVAV 213
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 157 bits (399), Expect = 6e-46
Identities = 74/177 (41%), Positives = 101/177 (57%), Gaps = 14/177 (7%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
I+ RNV K FG+ L VS I GE V ++GPSG+GK+T+L++IAGL PD G +
Sbjct: 3 IEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFG 62
Query: 152 GRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMR---DEQISELVK 208
G +D + +G VFQ ALF +TV +NV F L + + +I V
Sbjct: 63 GED----ATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVH 118
Query: 209 ENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
E L V L + DR P++LSGG ++RVALAR++ +VEP+VLL DEP LD
Sbjct: 119 ELLKLVQLDWLADRYPAQLSGGQRQRVALARAL-------AVEPKVLLLDEPFGALD 168
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 156 bits (396), Expect = 1e-45
Identities = 74/232 (31%), Positives = 119/232 (51%), Gaps = 25/232 (10%)
Query: 91 LIDCRNVYKSFGEK----HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG 146
L++ +N+ SF L VSF I+ GE +G++G SG+GKST+ + I GLL P G
Sbjct: 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSG 60
Query: 147 EVYIRGRKRAGLI-SDEEISGLRIGLVFQ--SAALFDSLTVRENVGFLLYENSKM-RDEQ 202
+ G+ L +I I +VFQ ++L +T+ E + L + K+ + E
Sbjct: 61 SIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEA 120
Query: 203 ISELVKENLAAVGL-KGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPT 261
E V L VGL + V +R P ELSGG ++RVA+AR++ + P++L+ DEPT
Sbjct: 121 RKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALA-------LNPKLLIADEPT 173
Query: 262 AGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313
+ LD + DL++ + + E GL + +TH + + DR+
Sbjct: 174 SALDVSVQAQILDLLKKLQE--ELGLT-------LLFITHDLGVVAKIADRV 216
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 157 bits (400), Expect = 6e-45
Identities = 97/295 (32%), Positives = 150/295 (50%), Gaps = 56/295 (18%)
Query: 91 LIDCRNVYKSFGEK-----HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDK 145
+I+ NV K+FG+ L VS +I GE GIIG SG GKST+L++I L P
Sbjct: 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTS 60
Query: 146 GEVYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQI 203
G V++ G+ L S+ E+ LR IG++FQ L S TV ENV F L E + + +I
Sbjct: 61 GSVFVDGQDLTAL-SEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPL-ELAGVPKAEI 118
Query: 204 SELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAG 263
+ V E L VGL DR P++LSGG K+RVA+AR++ + P++LL DE T+
Sbjct: 119 KQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARAL-------ANNPKILLCDEATSA 171
Query: 264 LDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHID 323
LDP + + +L++ +++ E GL + V++TH+ ++R DR+ +
Sbjct: 172 LDPETTQSILELLKDINR--ELGL-------TIVLITHEMEVVKRICDRVAVLD------ 216
Query: 324 VVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHE-FTSSSNPIVQQFASGSLE 377
+G++V +G E F + + I Q+F +LE
Sbjct: 217 ------------------------QGRLVEEGTVSEVFANPKHAITQEFIGETLE 247
|
Length = 339 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 153 bits (388), Expect = 3e-44
Identities = 75/232 (32%), Positives = 118/232 (50%), Gaps = 30/232 (12%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
+I+ N+ S+G + +L +S + GE +IGP+G GKST+LK I GLL P GE+ I
Sbjct: 4 MIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKI 63
Query: 151 RGRKRAGLISDEEISGLRIGLVFQSAALFDS---LTVRENVGFLLYENSKM---RDEQIS 204
G+ + LRIG V Q ++ D +TV++ V Y +++
Sbjct: 64 FGKP-----VRKRRKRLRIGYVPQKSS-VDRSFPITVKDVVLLGRYGKKGWFRRLNKKDK 117
Query: 205 ELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGL 264
E V E L VG++ + DR ELSGG K+RV LAR++ P++LL DEP G+
Sbjct: 118 EKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALA-------QNPDLLLLDEPFTGV 170
Query: 265 DPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDR-LCL 315
D + DL++ + ++G+ + ++VTH + DR +CL
Sbjct: 171 DVAGQKEIYDLLKELRQEGK----------TVLMVTHDLGLVMAYFDRVICL 212
|
Length = 254 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 152 bits (387), Expect = 4e-44
Identities = 72/239 (30%), Positives = 115/239 (48%), Gaps = 33/239 (13%)
Query: 89 DVLIDCRNVYKSFGEK----HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD 144
L+ RN+ +G H L VS +I GE +GI+G SG+GKST+ +++AGL P
Sbjct: 1 MTLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS 60
Query: 145 KGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYE-----NSKMR 199
G + + G+ A + + +VFQ SL R VG +L E
Sbjct: 61 SGSILLDGKPLAPKKRAKAFYRP-VQMVFQDPYS--SLNPRRTVGRILSEPLRPHGLSKS 117
Query: 200 DEQISELVKENLAAVGL-KGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYD 258
++I+EL L VGL DR P ELSGG ++R+A+AR++I EP++L+ D
Sbjct: 118 QQRIAEL----LDQVGLPPSFLDRRPHELSGGQRQRIAIARALI-------PEPKLLILD 166
Query: 259 EPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQ 317
EPT+ LD + +L+ + K+ Y+ ++H + + DR+ +
Sbjct: 167 EPTSALDVSVQAQILNLLLELKKERGLT---------YLFISHDLALVEHMCDRIAVMD 216
|
Length = 252 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 150 bits (381), Expect = 1e-43
Identities = 84/221 (38%), Positives = 111/221 (50%), Gaps = 22/221 (9%)
Query: 91 LIDCRNVYKSFGEKH-ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149
+I NV K++ LR VSF I GE V + GPSG GKST+LK+I G P +G++
Sbjct: 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKIL 60
Query: 150 IRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELV 207
+ G + EI LR IG+VFQ L TV ENV L K E I V
Sbjct: 61 VNGHDL-SRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPRE-IRRRV 118
Query: 208 KENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPI 267
E L VGLK LPS+LSGG ++RVA+AR+I+ +P VLL DEPT LDP
Sbjct: 119 SEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVN-------QPAVLLADEPTGNLDPD 171
Query: 268 ASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRR 308
S + L +++ G + ++ TH + R
Sbjct: 172 LSWEIMRLFEEINRLG----------TTVLMATHDLELVNR 202
|
Length = 223 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 149 bits (378), Expect = 3e-43
Identities = 84/227 (37%), Positives = 117/227 (51%), Gaps = 22/227 (9%)
Query: 91 LIDCRNVYKSF-GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149
+I+ NV K++ G L VS IR GE + + GPSG GK+T+LK++ G L P +G+V
Sbjct: 1 MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVR 60
Query: 150 IRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELV 207
I G L ++ LR IG+VFQ L TV ENV L K E I V
Sbjct: 61 IAGEDVNRL-RGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKERE-IQRRV 118
Query: 208 KENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPI 267
L VGL+ D P +LSGG ++RVA+AR+I+ P +LL DEPT LDP
Sbjct: 119 GAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIV-------NSPPLLLADEPTGNLDPD 171
Query: 268 ASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLC 314
S + DL++ ++K+G + +V TH S + R R+
Sbjct: 172 LSERILDLLKRLNKRG----------TTVIVATHDLSLVDRVAHRVI 208
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 149 bits (378), Expect = 5e-43
Identities = 85/227 (37%), Positives = 123/227 (54%), Gaps = 27/227 (11%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
I+ N+ K FG L V+ ++ G V ++GPSG+GKST+L+IIAGL PD G + +
Sbjct: 1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLN 60
Query: 152 GRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENL 211
G+ + +IG VFQ ALF LTVR+N+ F L E K +I V+E L
Sbjct: 61 GQD----ATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGL-EIRKHPKAKIKARVEELL 115
Query: 212 AAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTV 271
V L+G+ DR P++LSGG ++RVALAR++ +VEP+VLL DEP LD + V
Sbjct: 116 ELVQLEGLGDRYPNQLSGGQRQRVALARAL-------AVEPQVLLLDEPFGALD---AKV 165
Query: 272 VEDL---IRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCL 315
++L +R +H + + V VTH DR+ +
Sbjct: 166 RKELRSWLRKLHDEVH---------VTTVFVTHDQEEAMEVADRIVV 203
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 150 bits (380), Expect = 6e-43
Identities = 94/298 (31%), Positives = 145/298 (48%), Gaps = 61/298 (20%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
L+D R V + G + I +S + G+ I+GPSG GK+T+L++I G +APD GE+
Sbjct: 7 LVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILF 66
Query: 151 RGRK-----RAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISE 205
G R+ L + + R+ ++FQS ALF + V +NV + L E++++ +
Sbjct: 67 DGENIPAMSRSRLYTVRK----RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHS 122
Query: 206 LVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
V L AVGL+G +PSELSGGM +R ALAR+I ++EP+++++DEP G D
Sbjct: 123 TVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAI-------ALEPDLIMFDEPFVGQD 175
Query: 266 PIASTVVEDLIRSV-HKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDV 324
PI V+ LI + G + VVV+H DV
Sbjct: 176 PITMGVLVKLISELNSALG----------VTCVVVSH---------------------DV 204
Query: 325 VIILGAVAPDKEVFFI--YRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFASGSLEGPI 380
EV I + I + + KIV G ++ +P V+QF G +GP+
Sbjct: 205 ----------PEVLSIADHAYI-VADKKIVAHGSAQALQANPDPRVRQFLDGIADGPV 251
|
Length = 269 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 150 bits (382), Expect = 1e-42
Identities = 80/231 (34%), Positives = 115/231 (49%), Gaps = 25/231 (10%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
+I+ NV K +G K + V+ I GE + +IGPSG+GK+T LK+I L+ P GE+ I
Sbjct: 1 MIEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILI 60
Query: 151 RGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVK 208
G ISD + LR IG V Q LF LTV EN+ + + E+I +
Sbjct: 61 DGED----ISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVP-KLLGWDKERIKKRAD 115
Query: 209 ENLAAVGL--KGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDP 266
E L VGL DR P ELSGG ++RV +AR++ +P +LL DEP LDP
Sbjct: 116 ELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALA-------ADPPILLMDEPFGALDP 168
Query: 267 IASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQ 317
I +++ I+ + K+ + V VTH + DR+ +
Sbjct: 169 ITRKQLQEEIKELQKELG---------KTIVFVTHDIDEALKLADRIAVMD 210
|
Length = 309 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 148 bits (376), Expect = 1e-42
Identities = 77/232 (33%), Positives = 120/232 (51%), Gaps = 27/232 (11%)
Query: 92 IDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
I+ N+ K++ K L+ VS I GE V +IGPSG GKST+L+ + GL+ P G V I
Sbjct: 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLI 60
Query: 151 RGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENV--GFLLYENS-----KMRDE 201
G L + + LR IG++FQ L + L+V ENV G L ++ + +
Sbjct: 61 DGTDINKL-KGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPK 119
Query: 202 QISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPT 261
+ + L VGL + +LSGG ++RVA+AR+++ +P+++L DEP
Sbjct: 120 EEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALM-------QQPKLILADEPV 172
Query: 262 AGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313
A LDP +S V DL++ +++ E G+ +V HQ R DR+
Sbjct: 173 ASLDPASSRQVMDLLKRINR--EEGIT-------VIVSLHQVDLAREYADRI 215
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 2e-42
Identities = 70/171 (40%), Positives = 98/171 (57%), Gaps = 12/171 (7%)
Query: 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154
N+ K FG L+ +S ++ GE V ++GPSG GK+T+L+IIAGL G +Y GR
Sbjct: 8 DNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRD 67
Query: 155 RAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAV 214
I+ G+VFQS ALF +LTV +N+ + L N M +++E V E L V
Sbjct: 68 ----ITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLK-NRGMGRAEVAERVAELLDLV 122
Query: 215 GLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
GL G E + P +LSGG ++RVALAR++ P +LL DEP + LD
Sbjct: 123 GLPGSERKYPGQLSGGQQQRVALARALA-------TSPGLLLLDEPLSALD 166
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 147 bits (372), Expect = 3e-42
Identities = 67/171 (39%), Positives = 99/171 (57%), Gaps = 12/171 (7%)
Query: 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154
NV K FG L ++ I GE V ++GPSG GK+T L++IAGL P G +YI GR
Sbjct: 4 ENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGR- 62
Query: 155 RAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAV 214
++D I +VFQ+ AL+ +TV +N+ F L + K+ ++I E V+E +
Sbjct: 63 ---DVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGL-KLRKVPKDEIDERVREVAELL 118
Query: 215 GLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
++ + DR P +LSGG ++RVAL R+I+ EP+V L DEP + LD
Sbjct: 119 QIEHLLDRKPKQLSGGQRQRVALGRAIV-------REPKVFLMDEPLSNLD 162
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 146 bits (370), Expect = 4e-42
Identities = 76/209 (36%), Positives = 114/209 (54%), Gaps = 22/209 (10%)
Query: 96 NVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKR 155
N+ K FG+K IL ++ I G+ IIG SG+GKST+L II L D G+VY+ G++
Sbjct: 3 NISKKFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQET 62
Query: 156 AGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGF-LLYENSKMRDEQISELVKENLA 212
L S + R +G +FQ+ AL ++ TV EN+ L Y+ ++++ E KE L
Sbjct: 63 PPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKR--EKKKEALE 120
Query: 213 AVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVV 272
VGL + ELSGG ++RVALAR+I+ P ++L DEPT LDP V
Sbjct: 121 KVGLNLKLKQKIYELSGGEQQRVALARAIL-------KPPPLILADEPTGSLDPKNRDEV 173
Query: 273 EDLIRSVHKKGENGLANPGNIASYVVVTH 301
DL+ ++ +G+ + ++VTH
Sbjct: 174 LDLLLELNDEGK----------TIIIVTH 192
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 146 bits (371), Expect = 5e-42
Identities = 81/251 (32%), Positives = 111/251 (44%), Gaps = 53/251 (21%)
Query: 117 GEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLI-SDEEISGLRIGLVFQS 175
GE V I+GPSG GKST+L +IAG P GE+ I G ++ +S ++FQ
Sbjct: 25 GEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVS-----MLFQE 79
Query: 176 AALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRV 235
LF LTV +N+G L K+ EQ E V+ A VGL G RLP ELSGG ++RV
Sbjct: 80 NNLFAHLTVAQNIGLGLSPGLKLNAEQ-REKVEAAAAQVGLAGFLKRLPGELSGGQRQRV 138
Query: 236 ALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIAS 295
ALAR ++ + +LL DEP + LDP + L+ + + + L
Sbjct: 139 ALARCLVREQP-------ILLLDEPFSALDPALRAEMLALVSQLCDERKMTL-------- 183
Query: 296 YVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQG 355
++VTH R D R++FL G+I QG
Sbjct: 184 -LMVTHHPEDAARIAD------------------------------RVVFLDNGRIAAQG 212
Query: 356 MTHEFTSSSNP 366
T E S
Sbjct: 213 STQELLSGKAS 223
|
Length = 231 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 146 bits (370), Expect = 2e-41
Identities = 75/236 (31%), Positives = 115/236 (48%), Gaps = 28/236 (11%)
Query: 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV 148
L++ R + K FG + VS ++R GE VG+IGP+G GK+T+ +I G P G V
Sbjct: 2 TPLLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTV 61
Query: 149 YIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENV-----------GFLLYENSK 197
RGR GL I+ L I FQ LF LTV ENV G L ++
Sbjct: 62 IFRGRDITGL-PPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRAR 120
Query: 198 MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLY 257
+ + E +E L VGL + DR LS G ++R+ +AR++ + +P++LL
Sbjct: 121 KEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARAL-------ATQPKLLLL 173
Query: 258 DEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313
DEP AGL+P + + +LIR + +G + +++ H + DR+
Sbjct: 174 DEPAAGLNPEETEELAELIRELRDRG---------GVTILLIEHDMKLVMGLADRI 220
|
Length = 250 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 147 bits (372), Expect = 1e-40
Identities = 65/181 (35%), Positives = 102/181 (56%), Gaps = 18/181 (9%)
Query: 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE 147
L++ R + KSF K ++ + I +GE + ++GPSG GK+T+L++IAG PD G
Sbjct: 11 LSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGR 70
Query: 148 VYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMR---DEQIS 204
+ + G+ + ++ + VFQS ALF +TV ENV F L +M+ +I+
Sbjct: 71 IMLDGQDITHVPAENR----HVNTVFQSYALFPHMTVFENVAFGL----RMQKTPAAEIT 122
Query: 205 ELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGL 264
V E L V L+ R P +LSGG ++RVA+AR+++ N +P+VLL DE + L
Sbjct: 123 PRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVV--N-----KPKVLLLDESLSAL 175
Query: 265 D 265
D
Sbjct: 176 D 176
|
Length = 375 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 142 bits (361), Expect = 4e-40
Identities = 78/218 (35%), Positives = 110/218 (50%), Gaps = 36/218 (16%)
Query: 92 IDCRNVYKSFGEK---------------HIL---------RGVSFKIRHGEAVGIIGPSG 127
I + +YK FG+ IL VS +R GE I+G SG
Sbjct: 1 IKIKGLYKIFGKNPQKAFKLLAKGKSKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSG 60
Query: 128 TGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR---IGLVFQSAALFDSLTV 184
+GKST+L+ I L+ P G+V I G+ A +S +E+ LR I +VFQS AL TV
Sbjct: 61 SGKSTLLRCINRLIEPTSGKVLIDGQDIAA-MSRKELRELRRKKISMVFQSFALLPHRTV 119
Query: 185 RENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFD 244
ENV F L E + + E E L VGL+G E + P ELSGGM++RV LAR++ D
Sbjct: 120 LENVAFGL-EVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVD 178
Query: 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK 282
P++LL DE + LDP+ ++D + + +
Sbjct: 179 -------PDILLMDEAFSALDPLIRREMQDELLRLQAE 209
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 1e-39
Identities = 82/225 (36%), Positives = 114/225 (50%), Gaps = 25/225 (11%)
Query: 102 GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD 161
GE IL+GV ++ GE V I+GPSG+GKST+L ++AGL P GEV + G+ L +
Sbjct: 21 GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKL-DE 79
Query: 162 EEISGLR---IGLVFQSAALFDSLTVRENVGF-LLYENSKMRDEQISELVKENLAAVGLK 217
+ + LR +G VFQS L +LT ENV L D + K L AVGL
Sbjct: 80 DARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSR--AGAKALLEAVGLG 137
Query: 218 GVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIR 277
P++LSGG ++RVALAR+ + P+VL DEPT LD + DL+
Sbjct: 138 KRLTHYPAQLSGGEQQRVALARAF-------AGRPDVLFADEPTGNLDRATGDKIADLLF 190
Query: 278 SVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHI 322
++++ E G + V+VTH R DR L G +
Sbjct: 191 ALNR--ERG-------TTLVLVTHDPQLAARC-DR-QLRLRSGRL 224
|
Length = 228 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 140 bits (354), Expect = 2e-39
Identities = 83/232 (35%), Positives = 119/232 (51%), Gaps = 18/232 (7%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
+I+ +NV K FG +L + I GE V IIGPSG+GKST+L+ I L G++ +
Sbjct: 1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIV 60
Query: 151 RGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKEN 210
G K DE + G+VFQ LF LT ENV F E+ + +E
Sbjct: 61 DGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQAREL 120
Query: 211 LAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAST 270
LA VGL PSELSGG ++RVA+AR++ +V+P+++L+DEPT+ LDP
Sbjct: 121 LAKVGLAERAHHYPSELSGGQQQRVAIARAL-------AVKPKLMLFDEPTSALDPELRH 173
Query: 271 VVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHI 322
V +++ LA G + V+VTH+ + RL +F G I
Sbjct: 174 EVLKVMQD--------LAEEG--MTMVIVTHEIGFAEKVASRL-IFIDKGRI 214
|
Length = 240 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 3e-39
Identities = 73/230 (31%), Positives = 124/230 (53%), Gaps = 37/230 (16%)
Query: 85 EDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD 144
E I+ R++ +G+KH L+ ++ I + +IGPSG GKST+L+ + +
Sbjct: 1 ETMKIPAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLI 60
Query: 145 -----KGEVYIRGRKRAGLISDEEIS--GLR--IGLVFQSAALFDSLTVRENVGFLLYEN 195
+GEV + G+ I D ++ LR +G+VFQ F +++ +NV + L
Sbjct: 61 PGARVEGEVLLDGKN----IYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGL-RL 114
Query: 196 SKMRDEQISELVKENLAAVGLKG-VEDRL---PSELSGGMKKRVALARSIIFDNTKESVE 251
++D+++ E+V+ +L L V+DRL LSGG ++R+ +AR++ +V+
Sbjct: 115 HGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARAL-------AVK 167
Query: 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTH 301
PEVLL DEPT+ LDPI++ +E+LI + KK + V+VTH
Sbjct: 168 PEVLLMDEPTSALDPISTLKIEELITELKKK-----------YTIVIVTH 206
|
Length = 253 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 7e-39
Identities = 88/287 (30%), Positives = 133/287 (46%), Gaps = 59/287 (20%)
Query: 92 IDCRNVYKSFGEKH-ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
I+ NV K +G + ++ +I GE + +IGPSG+GK+T +K+I L+ P GE++I
Sbjct: 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFI 60
Query: 151 RGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVK 208
G I +++ LR IG V Q LF +TV EN+ L+ + K E+I E
Sbjct: 61 DGED----IREQDPVELRRKIGYVIQQIGLFPHMTVEENIA-LVPKLLKWPKEKIRERAD 115
Query: 209 ENLAAVGL--KGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDP 266
E LA VGL DR P ELSGG ++RV +AR++ + +P +LL DEP LDP
Sbjct: 116 ELLALVGLDPAEFADRYPHELSGGQQQRVGVARAL-------AADPPLLLMDEPFGALDP 168
Query: 267 IASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVV 325
I +++ + + ++ G+ + V VTH ID
Sbjct: 169 ITRDQLQEEFKRLQQELGK----------TIVFVTHD-------------------IDEA 199
Query: 326 IILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEF-TSSSNPIVQQF 371
L R+ + G+IV G E S +N V +F
Sbjct: 200 FRLAD-----------RIAIMKNGEIVQVGTPDEILRSPANDFVAEF 235
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 137 bits (346), Expect = 2e-38
Identities = 77/226 (34%), Positives = 113/226 (50%), Gaps = 22/226 (9%)
Query: 92 IDCRNVYKSFGEKHI-LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
I+ NV K++ L G++ I GE V ++GPSG GKST+LK+I P G + +
Sbjct: 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRV 60
Query: 151 RGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVK 208
G+ + L I LR IG+VFQ L V ENV F L E + + +I + V
Sbjct: 61 NGQDVSDL-RGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFAL-EVTGVPPREIRKRVP 118
Query: 209 ENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIA 268
L VGL LP+ELSGG ++RVA+AR+I+ P +L+ DEPT LDP
Sbjct: 119 AALELVGLSHKHRALPAELSGGEQQRVAIARAIVNS-------PTILIADEPTGNLDPDT 171
Query: 269 STVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLC 314
+ + +L++ ++K G + VV TH + R+
Sbjct: 172 TWEIMNLLKKINKAG----------TTVVVATHAKELVDTTRHRVI 207
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 135 bits (343), Expect = 4e-38
Identities = 76/224 (33%), Positives = 110/224 (49%), Gaps = 34/224 (15%)
Query: 100 SFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLI 159
S+G +L VSF+++ GE + I+GP+G GKST+LK I GLL P G + + G+
Sbjct: 8 SYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEK-- 65
Query: 160 SDEEISGLRIGLVFQSA-ALFDS-LTVRENVGFLLYENSKMRDEQI-----SELVKENLA 212
RIG V Q D ++VR+ V LY + V E L
Sbjct: 66 -----ERKRIGYVPQRRSIDRDFPISVRDVVLMGLY--GHKGLFRRLSKADKAKVDEALE 118
Query: 213 AVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVV 272
VGL + DR ELSGG ++RV LAR+++ D P++LL DEP AG+DP +
Sbjct: 119 RVGLSELADRQIGELSGGQQQRVLLARALVQD-------PDLLLLDEPFAGVDPKTQEDI 171
Query: 273 EDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDR-LCL 315
+L+R + ++G + +VVTH + DR L L
Sbjct: 172 YELLRELRREG----------MTILVVTHDLGLVLEYFDRVLLL 205
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 135 bits (343), Expect = 6e-38
Identities = 66/190 (34%), Positives = 103/190 (54%), Gaps = 19/190 (10%)
Query: 95 RNVYKSFG--EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG 152
RN+ K++ K + +S + GE G++G +G GK+T LK++ G L P G YI G
Sbjct: 4 RNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYING 63
Query: 153 RKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMR---DEQISELVKE 209
+ +D + + +G Q ALFD LTVRE++ F ++++ +I E V+
Sbjct: 64 Y---SIRTDRKAARQSLGYCPQFDALFDELTVREHLRFY----ARLKGLPKSEIKEEVEL 116
Query: 210 NLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAS 269
L +GL ++ LSGGMK++++LA ++I P VLL DEPT+GLDP +
Sbjct: 117 LLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGG-------PSVLLLDEPTSGLDPASR 169
Query: 270 TVVEDLIRSV 279
+ DLI V
Sbjct: 170 RAIWDLILEV 179
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 141 bits (359), Expect = 1e-37
Identities = 73/249 (29%), Positives = 119/249 (47%), Gaps = 36/249 (14%)
Query: 81 LFEPEDDGDVLIDCRNVYKSF-----------GEKHILRGVSFKIRHGEAVGIIGPSGTG 129
+ L+ RN+ K + GE + VSF +R GE +G++G SG+G
Sbjct: 270 PRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSG 329
Query: 130 KSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL--VFQS--AALFDSLTVR 185
KST+ +I+AGLL P G + G+ ++ E+ LR + VFQ ++L +TV
Sbjct: 330 KSTLARILAGLLPPSSGSIIFDGQDLD--LTGGELRRLRRRIQMVFQDPYSSLNPRMTVG 387
Query: 186 ENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSIIFD 244
+ + L + + V E L VGL DR P ELSGG ++RVA+AR++
Sbjct: 388 DILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALA-- 445
Query: 245 NTKESVEPEVLLYDEPTAGLDP-IASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQH 303
+EP++L+ DEP + LD + + V+ L + G +Y+ ++H
Sbjct: 446 -----LEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELG----------LTYLFISHDL 490
Query: 304 STIRRAVDR 312
+ +R DR
Sbjct: 491 AVVRYIADR 499
|
Length = 539 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 132 bits (336), Expect = 2e-37
Identities = 67/225 (29%), Positives = 106/225 (47%), Gaps = 66/225 (29%)
Query: 92 IDCRNVYKSFGEKH--ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149
I+ +NV S+ + +L+ VS I+ GE V I+GPSG+GKST+LK++ L P GE+
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60
Query: 150 IRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELV 207
I G + D ++ LR I V Q LF T+REN+
Sbjct: 61 IDGVD----LRDLDLESLRKNIAYVPQDPFLFSG-TIRENI------------------- 96
Query: 208 KENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPI 267
LSGG ++R+A+AR+++ +P +L+ DE T+ LDP
Sbjct: 97 -------------------LSGGQRQRIAIARALL-------RDPPILILDEATSALDPE 130
Query: 268 ASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDR 312
++ + +R++ K + +V+ H+ STIR A DR
Sbjct: 131 TEALILEALRALAKG-----------KTVIVIAHRLSTIRDA-DR 163
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 131 bits (333), Expect = 2e-37
Identities = 64/222 (28%), Positives = 99/222 (44%), Gaps = 71/222 (31%)
Query: 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154
N+ +G + L VS ++ GE V ++GP+G+GKST+L+ IAGLL P GE+ I G+
Sbjct: 3 ENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKD 62
Query: 155 RAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAV 214
A L +E RIG V Q
Sbjct: 63 IAKLPLEELRR--RIGYVPQ---------------------------------------- 80
Query: 215 GLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVED 274
LSGG ++RVALAR+++ + P++LL DEPT+GLDP + + +
Sbjct: 81 ------------LSGGQRQRVALARALLLN-------PDLLLLDEPTSGLDPASRERLLE 121
Query: 275 LIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLF 316
L+R + ++G + ++VTH A DR+ +
Sbjct: 122 LLRELAEEG----------RTVIIVTHDPELAELAADRVIVL 153
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 7e-37
Identities = 63/195 (32%), Positives = 109/195 (55%), Gaps = 15/195 (7%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
+ N+ K +G++ ++ GVS ++ GE VG++GP+G GK+T +I GL+ PD G++ +
Sbjct: 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLD 60
Query: 152 GRKRAGLISDEEI---SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVK 208
G+ I+ + + L IG + Q A++F LTV EN+ +L + E+ +L +
Sbjct: 61 GQD----ITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKL-E 115
Query: 209 ENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIA 268
E L + + S LSGG ++RV +AR++ P+ LL DEP AG+DPIA
Sbjct: 116 ELLEEFHITHLRKSKASSLSGGERRRVEIARALA-------TNPKFLLLDEPFAGVDPIA 168
Query: 269 STVVEDLIRSVHKKG 283
++ +I+ + +G
Sbjct: 169 VQDIQKIIKILKDRG 183
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 9e-37
Identities = 75/235 (31%), Positives = 121/235 (51%), Gaps = 28/235 (11%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--LAPD---K 145
I+ N+ +GEK L+ ++ I + +IGPSG GKST+L+ + + L P +
Sbjct: 1 AIEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIE 60
Query: 146 GEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISE 205
G+V G+ D R+G+VFQ F +++ +N+ + + +++ E
Sbjct: 61 GKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPF-PMSIYDNIAYGPRLHGIKDKKELDE 119
Query: 206 LVKENLAAVGL-KGVEDRL---PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPT 261
+V+E+L L V+DRL LSGG ++R+ +AR++ +VEPEVLL DEPT
Sbjct: 120 IVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARAL-------AVEPEVLLLDEPT 172
Query: 262 AGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLF 316
+ LDPIA+ +E+LI+ + KK + V+VTH R DR F
Sbjct: 173 SALDPIATGKIEELIQELKKK-----------YTIVIVTHNMQQAARISDRTAFF 216
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 9e-37
Identities = 73/206 (35%), Positives = 99/206 (48%), Gaps = 29/206 (14%)
Query: 117 GEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL------RIG 170
E GI G SG GKST+L+ IAGL PD G + + G ++ D +IG
Sbjct: 23 EEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGT----VLFDSRKKINLPPQQRKIG 78
Query: 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGG 230
LVFQ ALF L VREN+ F L D V E L +GL + +R P++LSGG
Sbjct: 79 LVFQQYALFPHLNVRENLAFGLKRKRNREDRI---SVDELLDLLGLDHLLNRYPAQLSGG 135
Query: 231 MKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANP 290
K+RVALAR++ +PE+LL DEP + LD + ++ + K
Sbjct: 136 EKQRVALARALA-------AQPELLLLDEPFSALDRALRLQLLPELKQIKKN-------- 180
Query: 291 GNIASYVVVTHQHSTIRRAVDRLCLF 316
NI + VTH S DR+ +
Sbjct: 181 LNIPV-IFVTHDLSEAEYLADRIVVM 205
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 131 bits (333), Expect = 1e-36
Identities = 65/197 (32%), Positives = 98/197 (49%), Gaps = 20/197 (10%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
++ N+ +G+ IL GVS + GE V ++G +G GK+T+LK I GLL P G +
Sbjct: 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFD 60
Query: 152 GRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENL 211
GR GL E + IG V + +F LTV EN LL ++ R + K L
Sbjct: 61 GRDITGL-PPHERARAGIGYVPEGRRIFPELTVEEN--LLLGAYARRRAK-----RKARL 112
Query: 212 AAV-----GLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDP 266
V LK +L LSGG ++ +A+AR+++ P++LL DEP+ GL P
Sbjct: 113 ERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALM-------SRPKLLLLDEPSEGLAP 165
Query: 267 IASTVVEDLIRSVHKKG 283
+ + IR + +G
Sbjct: 166 KIVEEIFEAIRELRDEG 182
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 132 bits (333), Expect = 2e-36
Identities = 71/197 (36%), Positives = 103/197 (52%), Gaps = 23/197 (11%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
I+ N+ K +G+ +RGVSF++R GE G++GP+G GK+T +K++ LL P G +
Sbjct: 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVA 60
Query: 152 G---RKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENV---GFLLYENSKMRDEQISE 205
G + + RIG+VFQ ++ D LT EN+ L R E+I E
Sbjct: 61 GHDVVREPREVRR------RIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDE 114
Query: 206 LVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
L L VGL DRL SGGM++R+ +ARS++ PEVL DEPT GLD
Sbjct: 115 L----LDFVGLLEAADRLVKTYSGGMRRRLEIARSLV-------HRPEVLFLDEPTIGLD 163
Query: 266 PIASTVVEDLIRSVHKK 282
P V + I + ++
Sbjct: 164 PQTRAHVWEYIEKLKEE 180
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 2e-36
Identities = 60/189 (31%), Positives = 99/189 (52%), Gaps = 16/189 (8%)
Query: 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154
++ K++G+K +L +S ++ GE G +GP+G GK+T +KII GL+ PD GE+ G+
Sbjct: 4 NDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKS 63
Query: 155 RAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAV 214
I RIG + ++ + +LT REN L ++ + E L V
Sbjct: 64 YQKNIEALR----RIGALIEAPGFYPNLTAREN--LRLLARLLGIRKKR---IDEVLDVV 114
Query: 215 GLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVED 274
GLK + S GMK+R+ +A +++ + P++L+ DEPT GLDP + +
Sbjct: 115 GLKDSAKKKVKGFSLGMKQRLGIALALLGN-------PDLLILDEPTNGLDPDGIKELRE 167
Query: 275 LIRSVHKKG 283
LI S+ +G
Sbjct: 168 LILSLRDQG 176
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 134 bits (340), Expect = 3e-36
Identities = 80/213 (37%), Positives = 122/213 (57%), Gaps = 27/213 (12%)
Query: 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154
+N+ K FG ++ ++ I+ G V ++GPSG GK+T+L+++AGL P +G+++I G
Sbjct: 10 KNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGED 69
Query: 155 RAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMR---DEQISELVKENL 211
++ I I +VFQS ALF +++ ENVG+ L KM E+ + VKE L
Sbjct: 70 ----VTHRSIQQRDICMVFQSYALFPHMSLGENVGYGL----KMLGVPKEERKQRVKEAL 121
Query: 212 AAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTV 271
V L G EDR ++SGG ++RVALAR++I ++P+VLL+DEP + LD
Sbjct: 122 ELVDLAGFEDRYVDQISGGQQQRVALARALI-------LKPKVLLFDEPLSNLDA----- 169
Query: 272 VEDLIRSVHKKGENGLANPGNIASYVVVTHQHS 304
+L RS+ +K L NI S + VTH S
Sbjct: 170 --NLRRSMREKIRE-LQQQFNITS-LYVTHDQS 198
|
Length = 351 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 134 bits (340), Expect = 3e-36
Identities = 89/255 (34%), Positives = 134/255 (52%), Gaps = 35/255 (13%)
Query: 92 IDCRNVYKSF----GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE 147
I+ +N+ K F H L VS I GE G+IG SG GKST+++ I L P G
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 148 VYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISE 205
V + G+ L S++E+ R IG++FQ L S TV +NV L E + +I
Sbjct: 62 VLVDGQDLTAL-SEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPL-ELAGTPKAEIKA 119
Query: 206 LVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
V E L VGL DR P++LSGG K+RVA+AR++ + P+VLL DE T+ LD
Sbjct: 120 RVTELLELVGLSDKADRYPAQLSGGQKQRVAIARAL-------ASNPKVLLCDEATSALD 172
Query: 266 PIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHID-- 323
P + + +L++ +++ E GL + V++TH+ ++R DR+ + ID
Sbjct: 173 PATTRSILELLKDINR--ELGL-------TIVLITHEMDVVKRICDRVAV------IDAG 217
Query: 324 VVIILGAVAPDKEVF 338
++ G V+ EVF
Sbjct: 218 RLVEQGTVS---EVF 229
|
Length = 343 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 3e-36
Identities = 76/223 (34%), Positives = 116/223 (52%), Gaps = 40/223 (17%)
Query: 90 VLIDCRNVYKSFG---EKHI---------------------LRGVSFKIRHGEAVGIIGP 125
V I+ +NVYK FG ++ + + S + GE I+G
Sbjct: 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGL 62
Query: 126 SGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR---IGLVFQSAALFDSL 182
SG+GKST+++++ L+ P +GE+ + G+ A +S E+ LR I +VFQS AL
Sbjct: 63 SGSGKSTLVRLLNRLIEPTRGEILVDGKDIAK-LSAAELRELRRKKISMVFQSFALLPHR 121
Query: 183 TVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSII 242
TV ENV F L E + + E E L VGL+G D+ P+ELSGGM++RV LAR++
Sbjct: 122 TVLENVAFGL-EVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARAL- 179
Query: 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVED----LIRSVHK 281
+ +P++LL DE + LDP+ T ++D L + K
Sbjct: 180 ------ANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKK 216
|
Length = 386 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 3e-36
Identities = 81/231 (35%), Positives = 120/231 (51%), Gaps = 28/231 (12%)
Query: 91 LIDCRNVYKSFGEK----HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG 146
L+ C N+ K + E +L+GVS I GE V I+G SG+GKST+L ++ GL P G
Sbjct: 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSG 60
Query: 147 EVYIRGRKRAGLISDEEISGLR---IGLVFQSAALFDSLTVRENVGF-LLYENSKMRDEQ 202
EV G+ + L S E + LR +G ++Q L T ENV LL K ++
Sbjct: 61 EVLFNGQSLSKL-SSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLI--GKKSVKE 117
Query: 203 ISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA 262
E E L VGL+ + PSELSGG ++RVA+AR+++ +P ++L DEPT
Sbjct: 118 AKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALV-------NQPSLVLADEPTG 170
Query: 263 GLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313
LD + ++ DL+ + N N S++VVTH ++ DR+
Sbjct: 171 NLDNNNAKIIFDLMLEL-----NRELN----TSFLVVTHDLELAKKL-DRV 211
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 5e-36
Identities = 69/202 (34%), Positives = 106/202 (52%), Gaps = 18/202 (8%)
Query: 91 LIDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149
+++ N+ K + K L+ ++ I GE V IIGPSG GKST+L+ I L+ P G +
Sbjct: 1 MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSIL 60
Query: 150 IRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENV--GFLLYEN-----SKMRD 200
+ G L +++ LR IG++FQ L + LTV ENV G L Y+
Sbjct: 61 LEGTDITKL-RGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFS 119
Query: 201 EQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEP 260
E+ E L VGL + +LSGG ++RVA+AR++ +P+++L DEP
Sbjct: 120 EEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALA-------QQPDLILADEP 172
Query: 261 TAGLDPIASTVVEDLIRSVHKK 282
A LDP S V D ++ ++K+
Sbjct: 173 IASLDPKTSKQVMDYLKRINKE 194
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 8e-36
Identities = 89/275 (32%), Positives = 131/275 (47%), Gaps = 57/275 (20%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
+++ N+ +G K IL +SF I GE GI+GP+G+GKST+LK +AGLL P GEV +
Sbjct: 2 MLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLL 61
Query: 151 RGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKM------RDEQIS 204
G+ A L S +E+ ++ V QS + LTV E V Y + + DE+I
Sbjct: 62 DGKDIASL-SPKEL-AKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEI- 118
Query: 205 ELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGL 264
V+E L +GL+ + DR ELSGG ++RV +AR++ E +LL DEPT+ L
Sbjct: 119 --VEEALELLGLEHLADRPVDELSGGERQRVLIARALA-------QETPILLLDEPTSHL 169
Query: 265 DPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDV 324
D V +L+R ++++ + V+V H + R D
Sbjct: 170 DIAHQIEVLELLRDLNREKGLTV---------VMVLHDLNLAARYAD------------- 207
Query: 325 VIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHE 359
LI L +GKIV QG E
Sbjct: 208 -----------------HLILLKDGKIVAQGTPEE 225
|
Length = 258 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 130 bits (328), Expect = 2e-35
Identities = 66/172 (38%), Positives = 97/172 (56%), Gaps = 17/172 (9%)
Query: 96 NVYKSFGEK--HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGR 153
++ S+ K L VS I GE V ++GPSG GK+T+L +IAG + P +G + + GR
Sbjct: 8 HLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGR 67
Query: 154 KRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAA 213
+ G G G+VFQ+ AL L V +NV F L + + Q E+ + LA
Sbjct: 68 RIEG-------PGAERGVVFQNEALLPWLNVIDNVAFGL-QLRGIEKAQRREIAHQMLAL 119
Query: 214 VGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
VGL+G E + +LSGGM++RV +AR++ +VEP++LL DEP LD
Sbjct: 120 VGLEGAEHKYIWQLSGGMRQRVGIARAL-------AVEPQLLLLDEPFGALD 164
|
Length = 259 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 130 bits (328), Expect = 2e-35
Identities = 70/207 (33%), Positives = 112/207 (54%), Gaps = 24/207 (11%)
Query: 89 DVLIDCRNVYKSFGEKH-ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE 147
+++I+ +N+ K++ H L+ V+ +I GE V IIGPSG GKST+L+ + GL+ P GE
Sbjct: 1 EMMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGE 60
Query: 148 VYIRGRKRAGLISDEEISGLR-IGLVFQSAALFDSLTVRENV--GFLLYEN--------- 195
+ G + L E R IG++FQ L L+V ENV G L Y +
Sbjct: 61 ILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLF 120
Query: 196 SKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVL 255
SK Q + L VG+ + S LSGG ++RVA+AR+++ P+++
Sbjct: 121 SKEDKAQALDA----LERVGILDKAYQRASTLSGGQQQRVAIARALVQQ-------PKII 169
Query: 256 LYDEPTAGLDPIASTVVEDLIRSVHKK 282
L DEP A LDP ++ V D+++ ++++
Sbjct: 170 LADEPVASLDPESAKKVMDILKDINQE 196
|
Length = 258 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 4e-35
Identities = 69/188 (36%), Positives = 103/188 (54%), Gaps = 19/188 (10%)
Query: 102 GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK----RAG 157
G +L+G++F GE + ++G +G GKST+L + GLL P G V I G R G
Sbjct: 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKG 62
Query: 158 LISDEEISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVG 215
L+ + R+GLVFQ LF + V ++V F N + + ++ V+E L AVG
Sbjct: 63 LLERRQ----RVGLVFQDPDDQLF-AADVDQDVAFGPL-NLGLSEAEVERRVREALTAVG 116
Query: 216 LKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDL 275
G+ +R LSGG KKRVA+A ++ ++ P+VLL DEPTAGLDP + +
Sbjct: 117 ASGLRERPTHCLSGGEKKRVAIAGAV-------AMRPDVLLLDEPTAGLDPAGREQMLAI 169
Query: 276 IRSVHKKG 283
+R + +G
Sbjct: 170 LRRLRAEG 177
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 129 bits (325), Expect = 4e-35
Identities = 93/299 (31%), Positives = 141/299 (47%), Gaps = 68/299 (22%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDK-----G 146
I+ +N+ K F + +L G+ +++ GE V IIGPSG+GK+T+L+ I L P+ G
Sbjct: 4 IEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVG 63
Query: 147 EVYIRG----RKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENV--GFLLYENSKM 198
++ I ++ GLI LR +G VFQ+ LF TV EN+ G ++ +
Sbjct: 64 DITIDTARSLSQQKGLIRQ-----LRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GE 116
Query: 199 RDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYD 258
E+ + +E LA VGL G E P LSGG ++RVA+AR++ ++ PEV+L+D
Sbjct: 117 PKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARAL-------AMRPEVILFD 169
Query: 259 EPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQI 318
EPT+ LDP V + IR + ++ + V+VTH+ S R D
Sbjct: 170 EPTSALDPELVGEVLNTIRQLAQEKR----------TMVIVTHEMSFARDVAD------- 212
Query: 319 FGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHE-FTSSSNPIVQQFASGSL 376
R IF+ +G+IV QG F P +QF L
Sbjct: 213 -----------------------RAIFMDQGRIVEQGPAKALFADPQQPRTRQFLEKFL 248
|
Length = 250 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 127 bits (320), Expect = 8e-35
Identities = 85/240 (35%), Positives = 116/240 (48%), Gaps = 53/240 (22%)
Query: 117 GEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGL-ISDEEISGLRIGLVFQS 175
GE I+GPSG+GKST+L +IAG P G V I G +D +S ++FQ
Sbjct: 24 GEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVS-----MLFQE 78
Query: 176 AALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRV 235
LF LTV +NVG L K+ E + ++ LA VGL G+E RLP ELSGG ++RV
Sbjct: 79 NNLFAHLTVEQNVGLGLSPGLKLTAED-RQAIEVALARVGLAGLEKRLPGELSGGERQRV 137
Query: 236 ALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIAS 295
ALAR ++ D +P VLL DEP A LDP + DL+ +H + + +
Sbjct: 138 ALARVLVRD------KP-VLLLDEPFAALDPALRAEMLDLVLDLHAETKMTV-------- 182
Query: 296 YVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQG 355
++VTHQ +R L Q R++FL G+I QG
Sbjct: 183 -LMVTHQPEDAKR------LAQ------------------------RVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 9e-35
Identities = 58/191 (30%), Positives = 105/191 (54%), Gaps = 13/191 (6%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
+ N+ K + E L+ VS ++ G+ I+GP+G+GKS +L+ IAG + PD G++ +
Sbjct: 1 LKVENLSKDWKEFK-LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLN 59
Query: 152 GRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENL 211
G+ L ++ I V Q+ ALF +TV +N+ + L + + ++I V E
Sbjct: 60 GKDITNLPPEKR----DISYVPQNYALFPHMTVYKNIAYGLKKRKVDK-KEIERKVLEIA 114
Query: 212 AAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTV 271
+G+ + +R P LSGG ++RVA+AR+++ V P++LL DEP + LD
Sbjct: 115 EMLGIDHLLNRKPETLSGGEQQRVAIARALV-------VNPKILLLDEPFSALDVRTKEK 167
Query: 272 VEDLIRSVHKK 282
+ + ++ + K+
Sbjct: 168 LREELKKIRKE 178
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 129 bits (325), Expect = 1e-34
Identities = 62/188 (32%), Positives = 99/188 (52%), Gaps = 17/188 (9%)
Query: 99 KSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGL 158
K +G+ + GV+FK+R GE G +GP+G GK+T ++++ LL P G + G +
Sbjct: 1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYD---V 57
Query: 159 ISDEEISGLRIGLVFQSAALFDSLTVRENV---GFLLYENSKMRDEQISELVKENLAAVG 215
+ + IG+V Q A++ + LT REN+ G L +E+ EL++
Sbjct: 58 VREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLE----LFE 113
Query: 216 LKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDL 275
L DR SGGM++R+ +A S+I +P+VL DEPT GLDP + D
Sbjct: 114 LGEAADRPVGTYSGGMRRRLDIAASLI-------HQPDVLFLDEPTTGLDPRTRRAIWDY 166
Query: 276 IRSVHKKG 283
IR++ ++G
Sbjct: 167 IRALKEEG 174
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 2e-34
Identities = 61/200 (30%), Positives = 107/200 (53%), Gaps = 27/200 (13%)
Query: 94 CRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGR 153
N+ KS+ ++ ++ VS ++ GE VG++GP+G GK+T +I GL+ PD G++ +
Sbjct: 7 AENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLD-- 64
Query: 154 KRAGLISDEEISGL------RIGLVF--QSAALFDSLTVRENVGFLL--YENSKMRDEQI 203
DE+I+ L R+G+ + Q A++F LTV +N+ +L E + E+
Sbjct: 65 -------DEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAER- 116
Query: 204 SELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAG 263
E + L + + D LSGG ++RV +AR++ P+ +L DEP AG
Sbjct: 117 KEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALA-------ANPKFILLDEPFAG 169
Query: 264 LDPIASTVVEDLIRSVHKKG 283
+DPIA ++ +I+ + +G
Sbjct: 170 VDPIAVIDIQRIIKHLKDRG 189
|
Length = 243 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 2e-34
Identities = 82/254 (32%), Positives = 133/254 (52%), Gaps = 25/254 (9%)
Query: 65 PATKFNDSSKSENVNTLFEPEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIG 124
+ SE ++ P V ID V KS+G+K ++ G+SF + GE G++G
Sbjct: 17 SPIERKHQGISEAKASI--PGSMSTVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLG 74
Query: 125 PSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTV 184
P+G GKSTI ++I G+ +PD G++ + G + + ++ RIG+V Q L TV
Sbjct: 75 PNGAGKSTIARMILGMTSPDAGKITVLG---VPVPARARLARARIGVVPQFDNLDLEFTV 131
Query: 185 RENVGFLLYENS-KMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIF 243
REN+ L++ M +I ++ L L+ D S+LSGGMK+R+ LAR++I
Sbjct: 132 RENL--LVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALIN 189
Query: 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQH 303
D P++L+ DEPT GLDP A ++ + +RS+ +G+ + ++ TH
Sbjct: 190 D-------PQLLILDEPTTGLDPHARHLIWERLRSLLARGK----------TILLTTHFM 232
Query: 304 STIRRAVDRLCLFQ 317
R DRLC+ +
Sbjct: 233 EEAERLCDRLCVLE 246
|
Length = 340 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 3e-34
Identities = 60/177 (33%), Positives = 96/177 (54%), Gaps = 16/177 (9%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
+ N+ K +G+K L GVS + G G++GP+G GK+T+++I+A L P G + I
Sbjct: 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRID 59
Query: 152 GRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYEN--SKMRDEQISELVKE 209
G+ L +++ RIG + Q ++ + TVRE FL Y + +++ V E
Sbjct: 60 GQD--VLKQPQKLRR-RIGYLPQEFGVYPNFTVRE---FLDYIAWLKGIPSKEVKARVDE 113
Query: 210 NLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDP 266
L V L + LSGGM++RV +A++++ D P +L+ DEPTAGLDP
Sbjct: 114 VLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGD-------PSILIVDEPTAGLDP 163
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 4e-34
Identities = 73/242 (30%), Positives = 121/242 (50%), Gaps = 35/242 (14%)
Query: 91 LIDCRNVYKSF----GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDK- 145
L++ +N+ SF G + GVSF+++ GE +GI+G SG+GKS + K I GLL
Sbjct: 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNA 60
Query: 146 ----GEVYIRGRKRAGLISDEEISGLR---IGLVFQ--SAALFDSLTVRENVGFLLYENS 196
GE+ G+ L S++E+ +R I ++FQ +L +T+ + + +L +
Sbjct: 61 RIVGGEILFDGKDLLSL-SEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHG 119
Query: 197 KM-RDEQISELVKENLAAVGLKGVEDRL---PSELSGGMKKRVALARSIIFDNTKESVEP 252
K ++ E E L VG+ E RL P ELSGGM++RV +A ++ P
Sbjct: 120 KGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALAL-------NP 172
Query: 253 EVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDR 312
++L+ DEPT LD + DL++ + + E G A +++TH + DR
Sbjct: 173 KLLIADEPTTALDVTVQAQILDLLKELQR--EKGTA-------LILITHDLGVVAEIADR 223
Query: 313 LC 314
+
Sbjct: 224 VA 225
|
Length = 316 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 1e-33
Identities = 73/218 (33%), Positives = 118/218 (54%), Gaps = 23/218 (10%)
Query: 92 IDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE 147
I RN+ +G K +L ++ +I GE V + GPSG+GK+T+L +I GL + +G
Sbjct: 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGS 61
Query: 148 VYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISE 205
+ + G++ G S++E+ LR IG +FQ+ L LT R+NV L + ++ E
Sbjct: 62 LKVLGQELYGA-SEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARE 120
Query: 206 LVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
+ L AVGL D P LSGG K+RVA+AR+++ P+++L DEPTA LD
Sbjct: 121 RARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALV-------HRPKLVLADEPTAALD 173
Query: 266 PIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQH 303
+ V +L++ + + E G + ++VTH +
Sbjct: 174 SKSGRDVVELMQKLAR--EQG-------CTILIVTHDN 202
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 2e-33
Identities = 72/200 (36%), Positives = 121/200 (60%), Gaps = 20/200 (10%)
Query: 91 LIDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149
+++ R++ S+ + L+G++FK GE V ++GP+G GKST+ G+L P GEV
Sbjct: 1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVL 60
Query: 150 IRGRK----RAGLISDEEISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQI 203
I+G + L+ + +G+VFQ+ LF + TV E+V F N + E++
Sbjct: 61 IKGEPIKYDKKSLLEVRK----TVGIVFQNPDDQLF-APTVEEDVAFGPL-NLGLSKEEV 114
Query: 204 SELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAG 263
+ VKE L AVG++G E++ P LSGG KKRVA+A I+ +++PE+++ DEPT+G
Sbjct: 115 EKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIA-GIL------AMKPEIIVLDEPTSG 167
Query: 264 LDPIASTVVEDLIRSVHKKG 283
LDP+ ++ + L+ ++K+G
Sbjct: 168 LDPMGASQIMKLLYDLNKEG 187
|
Length = 275 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 127 bits (320), Expect = 2e-33
Identities = 70/192 (36%), Positives = 105/192 (54%), Gaps = 14/192 (7%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
I+ N+ KSFG +L +S I G+ V ++GPSG+GK+T+L+IIAGL G +
Sbjct: 3 IEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFH 62
Query: 152 GRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGF---LLYENSKMRDEQISELVK 208
G + L + + ++G VFQ ALF +TV +N+ F +L + I V
Sbjct: 63 GTDVSRLHARDR----KVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVT 118
Query: 209 ENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIA 268
+ L V L + DR P++LSGG K+RVALAR++ +VEP++LL DEP LD
Sbjct: 119 QLLEMVQLAHLADRYPAQLSGGQKQRVALARAL-------AVEPQILLLDEPFGALDAQV 171
Query: 269 STVVEDLIRSVH 280
+ +R +H
Sbjct: 172 RKELRRWLRQLH 183
|
Length = 353 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 2e-33
Identities = 70/203 (34%), Positives = 114/203 (56%), Gaps = 17/203 (8%)
Query: 86 DDGDVLIDCRNVYKSFG--EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP 143
+ V+I NV S+ E + L+ VSF+I GE V I+G +G+GKSTI KI+ GLL P
Sbjct: 2 KNKSVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKP 61
Query: 144 DKGEVYIRGRKRAGLISDEEISGLR--IGLVFQSA-ALFDSLTVRENVGFLLYENSKMRD 200
GE+ I G IS E + +R IG++FQ+ F TV +++ F L EN K+
Sbjct: 62 QSGEIKIDGIT----ISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGL-ENKKVPP 116
Query: 201 EQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEP 260
+++ +++ + VG++ D+ P LSGG K+RVA+A + + PE++++DE
Sbjct: 117 KKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALN-------PEIIIFDES 169
Query: 261 TAGLDPIASTVVEDLIRSVHKKG 283
T+ LDP ++ ++ + K
Sbjct: 170 TSMLDPKGKREIKKIMVDLRKTR 192
|
Length = 271 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 3e-33
Identities = 69/222 (31%), Positives = 110/222 (49%), Gaps = 21/222 (9%)
Query: 99 KSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGL 158
K G K + I GE I+G SG+GKST ++++ L+ P G+++I G
Sbjct: 1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMK- 59
Query: 159 ISDEEISGLR---IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVG 215
S E+ +R IG+VFQ ALF +T+ +N E +++ E E L VG
Sbjct: 60 QSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGP-ELLGWPEQERKEKALELLKLVG 118
Query: 216 LKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDL 275
L+ E R P ELSGGM++RV LAR++ + EP++LL DE + LDP+ ++D
Sbjct: 119 LEEYEHRYPDELSGGMQQRVGLARAL-------AAEPDILLMDEAFSALDPLIRDSMQDE 171
Query: 276 IRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQ 317
++ + + + V +TH R DR+ + +
Sbjct: 172 LKKLQATLQK---------TIVFITHDLDEAIRIGDRIVIMK 204
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 5e-33
Identities = 73/237 (30%), Positives = 116/237 (48%), Gaps = 32/237 (13%)
Query: 89 DVLIDCRNVYKSF----GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD 144
L++ N+ F G +R VSF++ GE +GI+G SG+GKST+ + GLL
Sbjct: 3 SPLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEG 62
Query: 145 ----KGEVYIRGRKRAGLISDE--EISGLRIGLVFQS--AALFDSLTVRENVGFLLYENS 196
GEV + GR GL E ++ G RI ++FQ +L +T+ + + L +
Sbjct: 63 GRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHG 122
Query: 197 KMRDEQISELVKENLAAVGL--KGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEV 254
K + + E L VGL DR P +LSGGM++RV +A ++ P++
Sbjct: 123 KGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALK-------PKL 175
Query: 255 LLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLA------NPG---NIASYVVVTHQ 302
L+ DEPT LD + DL++ + + E G+A + G +A VVV ++
Sbjct: 176 LIADEPTTALDVTTQAQILDLLKDLQR--ELGMAVLFITHDLGVVAELADRVVVMYK 230
|
Length = 539 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 5e-33
Identities = 66/198 (33%), Positives = 104/198 (52%), Gaps = 18/198 (9%)
Query: 91 LIDCRNVYKSFGEK-HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149
+++ ++ KS+G K +R VSF+ GE G++G +G GK+T+L++IA LL PD G+V
Sbjct: 1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVT 60
Query: 150 IRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFL--LYENSKMRDEQISELV 207
I G + D +IG++F L+ LT REN+ + L + ++I +
Sbjct: 61 IDG---VDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNG---LSRKEIKARI 114
Query: 208 KENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPI 267
E + L DR E S GMK++VA+AR+++ D P +L+ DEPT+GLD
Sbjct: 115 AELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHD-------PSILVLDEPTSGLDIR 167
Query: 268 ASTVVEDLIRSVHKKGEN 285
D I+ K E
Sbjct: 168 TRRKFHDFIK--QLKNEG 183
|
Length = 245 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 6e-33
Identities = 87/294 (29%), Positives = 144/294 (48%), Gaps = 59/294 (20%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
++ +++K +GE +L+GVS + G+ + IIG SG+GKST L+ I L P G + +
Sbjct: 7 LEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVN 66
Query: 152 G------RKRAGLI---SDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRD 200
G R + G + ++ LR +G+VFQ L+ +TV ENV +
Sbjct: 67 GEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSK 126
Query: 201 EQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEP 260
+ E ++ LA VG+ D P+ LSGG ++RVA+AR++ ++EPEV+L+DEP
Sbjct: 127 AEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARAL-------AMEPEVMLFDEP 179
Query: 261 TAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFG 320
T+ LDP +V ++++ + E G + VVVTH+ R +
Sbjct: 180 TSALDP---ELVGEVLKVMQDLAEEG-------RTMVVVTHEMGFAR---------DVSS 220
Query: 321 HIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHE-FTSSSNPIVQQFAS 373
H+ IFL++GKI +G + F + +P ++QF S
Sbjct: 221 HV---------------------IFLHQGKIEEEGPPEQVFGNPQSPRLKQFLS 253
|
Length = 256 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 7e-33
Identities = 63/224 (28%), Positives = 110/224 (49%), Gaps = 28/224 (12%)
Query: 96 NVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKR 155
NV K FG L +SF + GE G++GP+G GK+T +++I G++ PD GEV G+
Sbjct: 5 NVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPL 64
Query: 156 AGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENS--KMRDEQISELVKENLAA 213
+ RIG + + L+ + V + L+Y ++ E+ + E L
Sbjct: 65 DIAARN------RIGYLPEERGLYPKMKVIDQ---LVYLAQLKGLKKEEARRRIDEWLER 115
Query: 214 VGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVE 273
+ L ++ ELS G +++V ++I D PE+L+ DEP +GLDP+ +++
Sbjct: 116 LELSEYANKRVEELSKGNQQKVQFIAAVIHD-------PELLILDEPFSGLDPVNVELLK 168
Query: 274 DLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQ 317
D+IR + + G+ + ++ THQ + DR+ L
Sbjct: 169 DVIRELARAGK----------TVILSTHQMELVEELCDRVLLLN 202
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 8e-33
Identities = 72/238 (30%), Positives = 117/238 (49%), Gaps = 25/238 (10%)
Query: 84 PEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP 143
L++ R + KSFG L GVS +R GE ++G +G GKST++KI++G+ P
Sbjct: 1 MTMSTPPLLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPP 60
Query: 144 DKGEVYIRGRKRAGL-ISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSK----M 198
D GE+ I G+ A D +G I V Q +L +L+V EN+ FL E ++ +
Sbjct: 61 DSGEILIDGKPVAFSSPRDALAAG--IATVHQELSLVPNLSVAENI-FLGREPTRRFGLI 117
Query: 199 RDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYD 258
+ + +E LA +GL D L +LS ++ V +AR++ FD VL+ D
Sbjct: 118 DRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFD-------ARVLILD 170
Query: 259 EPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLF 316
EPTA L + + DLIR + +G + + ++H+ + DR+ +
Sbjct: 171 EPTAALTVKETERLFDLIRRLKAQG----------VAIIYISHRLDEVFEIADRITVL 218
|
Length = 500 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 2e-32
Identities = 64/175 (36%), Positives = 105/175 (60%), Gaps = 13/175 (7%)
Query: 92 IDCRNVYKSFGEKH-ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
+ + V KS+ K +++G+ + GE + ++GPSG GKST+L+++AGL GE++I
Sbjct: 4 LKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWI 63
Query: 151 RGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKEN 210
GR ++++ E + I +VFQ+ AL+ ++VREN+ + L + M +I E V E
Sbjct: 64 GGR----VVNELEPADRDIAMVFQNYALYPHMSVRENMAYGL-KIRGMPKAEIEERVAEA 118
Query: 211 LAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
+ L+ + DR P ELSGG ++RVA+ R+I+ EP V L+DEP + LD
Sbjct: 119 ARILELEPLLDRKPRELSGGQRQRVAMGRAIV-------REPAVFLFDEPLSNLD 166
|
Length = 356 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 123 bits (309), Expect = 2e-32
Identities = 76/230 (33%), Positives = 126/230 (54%), Gaps = 23/230 (10%)
Query: 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV 148
+V ID V KS+G+K ++ +SF I GE G++GP+G GKSTI +++ G+++PD+G++
Sbjct: 2 NVAIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKI 61
Query: 149 YIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENS-KMRDEQISELV 207
+ G ++ + IG+V Q L TVREN+ L++ M +I ++
Sbjct: 62 TVLGEPVPSRA---RLARVAIGVVPQFDNLDPEFTVRENL--LVFGRYFGMSTREIEAVI 116
Query: 208 KENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPI 267
L L+ D + LSGGMK+R+ LAR++I D P++L+ DEPT GLDP
Sbjct: 117 PSLLEFARLESKADVRVALLSGGMKRRLTLARALIND-------PQLLILDEPTTGLDPH 169
Query: 268 ASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQ 317
A ++ + +RS+ +G+ + ++ TH R DRLC+ +
Sbjct: 170 ARHLIWERLRSLLARGK----------TILLTTHFMEEAERLCDRLCVLE 209
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 2e-32
Identities = 64/193 (33%), Positives = 109/193 (56%), Gaps = 19/193 (9%)
Query: 91 LIDCRNVYKSFGEK----HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG 146
+I + K F + + GVSF ++ GE G++GP+G GK+T L+++AGLL PD G
Sbjct: 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAG 60
Query: 147 EVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFL--LYENSKMRDEQIS 204
+ G ++ + + R+G V S L+D LT REN+ + LY ++ ++++
Sbjct: 61 FATVDGFD---VVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELT 114
Query: 205 ELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGL 264
++E +G++ + DR S GM+++VA+AR+++ D P VLL DEPT GL
Sbjct: 115 ARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHD-------PPVLLLDEPTTGL 167
Query: 265 DPIASTVVEDLIR 277
D +A+ + + IR
Sbjct: 168 DVMATRALREFIR 180
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 3e-32
Identities = 78/244 (31%), Positives = 129/244 (52%), Gaps = 37/244 (15%)
Query: 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE 162
EK L V+ +I GE VG+IG +G+GKST+++ + GLL P G++ I G I+D+
Sbjct: 19 EKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVD----ITDK 74
Query: 163 EISGL----RIGLVFQ--SAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL 216
++ ++GLVFQ LF+ T+ +++ F N + +E+I VK + VGL
Sbjct: 75 KVKLSDIRKKVGLVFQYPEYQLFEE-TIEKDIAFGP-INLGLSEEEIENRVKRAMNIVGL 132
Query: 217 K--GVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVED 274
+D+ P ELSGG K+RVA+A + ++EP++L+ DEPTAGLDP + +
Sbjct: 133 DYEDYKDKSPFELSGGQKRRVAIAGVV-------AMEPKILILDEPTAGLDPKGRDEILN 185
Query: 275 LIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPD 334
I+ +HK+ + ++V+H + + DR+ I + + G
Sbjct: 186 KIKELHKEYNM---------TIILVSHSMEDVAKLADRI----IVMNKGKCELQG---TP 229
Query: 335 KEVF 338
+EVF
Sbjct: 230 REVF 233
|
Length = 287 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 3e-32
Identities = 83/290 (28%), Positives = 131/290 (45%), Gaps = 64/290 (22%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
I + +G L ++ GE + ++GPSG GKS++L+++ L P G + I
Sbjct: 3 IQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIA 62
Query: 152 GRK--RAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYEN----SKMRDEQI 203
G + SD+ I LR +G+VFQ L+ LTV++N L E + +Q
Sbjct: 63 GNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQN----LIEAPCRVLGLSKDQA 118
Query: 204 SELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAG 263
++ L + LK DR P LSGG ++RVA+AR+++ +EP+VLL+DEPTA
Sbjct: 119 LARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALM-------MEPQVLLFDEPTAA 171
Query: 264 LDP-IASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHI 322
LDP I + +V +IR + + G + V+VTH+ R+
Sbjct: 172 LDPEITAQIV-SIIRELAETG----------ITQVIVTHEVEVARKTAS----------- 209
Query: 323 DVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFA 372
R++++ G IV QG FT P + F
Sbjct: 210 -------------------RVVYMENGHIVEQGDASCFT---QPQTEAFK 237
|
Length = 242 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 121 bits (304), Expect = 3e-32
Identities = 79/286 (27%), Positives = 129/286 (45%), Gaps = 54/286 (18%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
I + +G L ++ GE + ++GPSG GKS++L+++ L P G + I
Sbjct: 3 IQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIA 62
Query: 152 GRK--RAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELV 207
G + SD+ I LR +G+VFQ L+ LTV+EN+ + +Q
Sbjct: 63 GNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARA 122
Query: 208 KENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPI 267
++ L + LK DR P LSGG ++RVA+AR+++ +EP+VLL+DEPTA LDP
Sbjct: 123 EKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALM-------MEPQVLLFDEPTAALDPE 175
Query: 268 ASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVII 327
+ + +I+ + + G + V+VTH+ R+
Sbjct: 176 ITAQIVSIIKELAETG----------ITQVIVTHEVEVARKTAS---------------- 209
Query: 328 LGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFAS 373
R++++ G IV QG FT P + F +
Sbjct: 210 --------------RVVYMENGHIVEQGDASCFT---EPQTEAFKN 238
|
Length = 242 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 123 bits (312), Expect = 4e-32
Identities = 66/171 (38%), Positives = 103/171 (60%), Gaps = 12/171 (7%)
Query: 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154
RNV K++G+ I + ++ I GE V +GPSG GKST+L++IAGL G+++I G K
Sbjct: 7 RNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFI-GEK 65
Query: 155 RAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAV 214
R ++D + +G+VFQS AL+ L+V EN+ F L + + + E+I++ V + +
Sbjct: 66 R---MNDVPPAERGVGMVFQSYALYPHLSVAENMSFGL-KLAGAKKEEINQRVNQVAEVL 121
Query: 215 GLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
L + DR P LSGG ++RVA+ R+++ EP V L DEP + LD
Sbjct: 122 QLAHLLDRKPKALSGGQRQRVAIGRTLV-------AEPSVFLLDEPLSNLD 165
|
Length = 369 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 4e-32
Identities = 62/162 (38%), Positives = 93/162 (57%), Gaps = 15/162 (9%)
Query: 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166
L+GV+ I+ GE + +IG SG GKST+L +I+GL P G V + G++ D +
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMV-- 58
Query: 167 LRIGLVFQSAALFDSLTVRENVGFLLYE-NSKMRDEQISELVKENLAAVGLKGVEDRLPS 225
VFQ+ +L LTVREN+ + + + +V+E++A VGL D+ P
Sbjct: 59 -----VFQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPG 113
Query: 226 ELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPI 267
+LSGGMK+RVA+AR++ S+ P+VLL DEP LD +
Sbjct: 114 QLSGGMKQRVAIARAL-------SIRPKVLLLDEPFGALDAL 148
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 6e-32
Identities = 59/198 (29%), Positives = 102/198 (51%), Gaps = 22/198 (11%)
Query: 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV 148
+++ N+ +G+ LRGVS ++ GE V ++G +G GK+T+LK I GL+ P G +
Sbjct: 1 APMLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRI 60
Query: 149 YIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVREN--VGFLLYENSKMRD---EQI 203
G GL E + L I V + +F LTV EN +G + + ++ E++
Sbjct: 61 IFDGEDITGLPP-HERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEV 119
Query: 204 SELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAG 263
EL LK ++ LSGG ++ +A+AR+++ P++LL DEP+ G
Sbjct: 120 YELFPR------LKERRNQRAGTLSGGEQQMLAIARALM-------SRPKLLLLDEPSEG 166
Query: 264 LDPIASTVVEDLIRSVHK 281
L P +VE++ ++ +
Sbjct: 167 LAPK---IVEEIFEAIKE 181
|
Length = 237 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 7e-32
Identities = 59/174 (33%), Positives = 86/174 (49%), Gaps = 44/174 (25%)
Query: 93 DCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG 152
+ N+ +G + +L +S I GE VGI+GP+G GKST+LK +AGLL P GE+ + G
Sbjct: 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDG 60
Query: 153 RKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLA 212
+ A L S +E++ +I V Q+ L
Sbjct: 61 KDLASL-SPKELA-RKIAYVPQA-----------------------------------LE 83
Query: 213 AVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDP 266
+GL + DR +ELSGG ++RV LAR++ EP +LL DEPT+ LD
Sbjct: 84 LLGLAHLADRPFNELSGGERQRVLLARALA-------QEPPILLLDEPTSHLDI 130
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 1e-31
Identities = 75/224 (33%), Positives = 106/224 (47%), Gaps = 25/224 (11%)
Query: 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154
N+ GE+ + +SF + GEA+ I GP+G GK+T+L+I+AGLL PD GEVY +G
Sbjct: 6 ENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEP 65
Query: 155 RAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAV 214
+ + L +G + LT EN+ F + I E LA V
Sbjct: 66 IQNVRESYHQALLYLG---HQPGIKTELTALENLHFWQRFHGSGNAATIWEA----LAQV 118
Query: 215 GLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVED 274
GL G+ED +LS G ++RVALAR + S P +L DEP LD ++
Sbjct: 119 GLAGLEDLPVGQLSAGQQRRVALARLWL------SPAPLWIL-DEPFTALDKEGVALLTA 171
Query: 275 LIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA-VDRLCLFQ 317
L+ + H A G I ++ THQ I A + RL L
Sbjct: 172 LMAA-H-------AAQGGIV--LLTTHQPLPIASAQIRRLDLTA 205
|
Length = 209 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 2e-31
Identities = 81/254 (31%), Positives = 128/254 (50%), Gaps = 41/254 (16%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
+ +V K FG +L G++F + GE V +IGPSG+GKSTIL+I+ L D+G++ +
Sbjct: 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVE 60
Query: 152 G------RKRAGLISDEEISGLR-----IGLVFQSAALFDSLTVRENVGFLLYENSKMRD 200
G R G + + LR IG+VFQS LF TV +NV M
Sbjct: 61 GEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMAR 120
Query: 201 EQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEP 260
+ + E L VGL D +P++LSGG ++RVA+AR++ ++ P+V+L+DE
Sbjct: 121 AEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARAL-------AMRPKVMLFDEV 173
Query: 261 TAGLDPIASTVVEDLIRSVHKKG-ENGLANPGNIASYVVVTHQHSTIRRAVDRLCLF--- 316
T+ LDP +V +++ + + E+ L + ++VTH+ R DR+C F
Sbjct: 174 TSALDP---ELVGEVLNVIRRLASEHDL-------TMLLVTHEMGFAREFADRVCFFDKG 223
Query: 317 ---------QIFGH 321
+IF
Sbjct: 224 RIVEQGKPDEIFRQ 237
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 2e-31
Identities = 65/177 (36%), Positives = 95/177 (53%), Gaps = 4/177 (2%)
Query: 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149
+++ RN+ G + +L VS +R GE V I+GP+G GKST+L+ ++G L+PD GEV
Sbjct: 1 AMLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVR 60
Query: 150 IRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKE 209
+ GR A S E++ R ++ Q ++L TV E V + R E LV
Sbjct: 61 LNGRPLADW-SPAELARRR-AVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAED-DALVAA 117
Query: 210 NLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDP 266
LA V L + R +LSGG ++RV LAR ++ + P LL DEPT+ LD
Sbjct: 118 ALAQVDLAHLAGRDYPQLSGGEQQRVQLAR-VLAQLWEPDGPPRWLLLDEPTSALDL 173
|
Length = 258 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 2e-31
Identities = 78/230 (33%), Positives = 117/230 (50%), Gaps = 33/230 (14%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
ID RNV K +G+K ++ G+SF ++ GE G++GP+G GK+T L+++ GL PD G + +
Sbjct: 8 IDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLC 67
Query: 152 GRKRAGLISDEEISG------LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISE 205
G E + R+G+V Q L TVREN+ + +
Sbjct: 68 G---------EPVPSRARHARQRVGVVPQFDNLDPDFTVRENL-LVFGRYFGLSAAAARA 117
Query: 206 LVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
LV L L+ D ELSGGMK+R+ LAR+++ D P+VL+ DEPT GLD
Sbjct: 118 LVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVND-------PDVLVLDEPTTGLD 170
Query: 266 PIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCL 315
P A ++ + +RS+ +G+ L + TH R DRLC+
Sbjct: 171 PQARHLMWERLRSLLARGKTIL----------LTTHFMEEAERLCDRLCV 210
|
Length = 306 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 3e-31
Identities = 70/204 (34%), Positives = 121/204 (59%), Gaps = 22/204 (10%)
Query: 91 LIDCRNV---YKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE 147
+I+ +N+ YK EK+ L VSF ++ GE + IIG +G+GKST +++I GLL + G+
Sbjct: 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQ 63
Query: 148 VYIRGRKRAGLISDEEISGLR--IGLVFQSA-ALFDSLTVRENVGFLLYENSKMRDEQIS 204
+ I G L+++E + +R IG+VFQ+ F TV ++V F L EN + E++
Sbjct: 64 IIIDGD----LLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGL-ENKGIPHEEMK 118
Query: 205 ELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGL 264
E V E L VG++ ++R P+ LSGG K+RVA+A ++ ++ P++++ DE T+ L
Sbjct: 119 ERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAV-------AMRPKIIILDEATSML 171
Query: 265 DPIASTVVEDLIRSVHK-KGENGL 287
DP +LI+++ + + +
Sbjct: 172 DPEGRL---ELIKTIKGIRDDYQM 192
|
Length = 279 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 4e-31
Identities = 59/157 (37%), Positives = 82/157 (52%), Gaps = 14/157 (8%)
Query: 111 SFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK-RAGLISDEEISGLRI 169
+ GE V I+GPSG GKST+L +IAG L P G + + G+ S +S L
Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSML-- 76
Query: 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSG 229
FQ LF LTV +N+G L K+ Q E + +G++ + RLP +LSG
Sbjct: 77 ---FQENNLFSHLTVAQNIGLGLNPGLKLNAAQ-REKLHAIARQMGIEDLLARLPGQLSG 132
Query: 230 GMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDP 266
G ++RVALAR ++ E +LL DEP + LDP
Sbjct: 133 GQRQRVALARCLV-------REQPILLLDEPFSALDP 162
|
Length = 232 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (296), Expect = 6e-31
Identities = 90/295 (30%), Positives = 148/295 (50%), Gaps = 60/295 (20%)
Query: 96 NVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG--- 152
+++K +GE +L+GVS + G+ + IIG SG+GKST L+ I L P +G + + G
Sbjct: 10 DLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTI 69
Query: 153 ---RKRAGL--ISDEEISGL---RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQIS 204
R + G ++D+ L R+ +VFQ L+ +TV ENV + + ++
Sbjct: 70 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEAR 129
Query: 205 ELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAG 263
E + LA VG+ + + P LSGG ++RV++AR++ ++EPEVLL+DEPT+
Sbjct: 130 ERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARAL-------AMEPEVLLFDEPTSA 182
Query: 264 LDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHID 323
LDP +V +++R + + E G + VVVTH+ R + H+
Sbjct: 183 LDP---ELVGEVLRIMQQLAEEG-------KTMVVVTHEMGFAR---------HVSSHV- 222
Query: 324 VVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHE-FTSSSNPIVQQFASGSLE 377
IFL++GKI +G + F + +P +QQF GSL+
Sbjct: 223 --------------------IFLHQGKIEEEGAPEQLFGNPQSPRLQQFLKGSLK 257
|
Length = 257 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 1e-30
Identities = 74/192 (38%), Positives = 109/192 (56%), Gaps = 21/192 (10%)
Query: 91 LIDCRNVYKSF-GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149
LI+ R++ S+ G K L ++F + +IGP+G GKST+ + G+L P G V
Sbjct: 3 LIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVL 62
Query: 150 IRGRKRAGLISDEEISGLR--IGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISE 205
IRG I+ E I +R +GLVFQ+ +F S TV +++ F N + +E ++
Sbjct: 63 IRGEP----ITKENIREVRKFVGLVFQNPDDQIF-SPTVEQDIAFGPI-NLGLDEETVAH 116
Query: 206 LVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
V L +GL+ + DR+P LSGG KKRVA+A I ++EP+VL+ DEPTAGLD
Sbjct: 117 RVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVI-------AMEPQVLVLDEPTAGLD 169
Query: 266 PIASTVVEDLIR 277
P V++LI
Sbjct: 170 PQG---VKELID 178
|
Length = 277 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 2e-30
Identities = 61/191 (31%), Positives = 100/191 (52%), Gaps = 22/191 (11%)
Query: 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154
+N+ K FG++ + +S + G++GP+G GKST+LK+I G+L P GE+ G
Sbjct: 4 KNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHP 63
Query: 155 --RAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLA 212
R L IG + +S L+++LT REN+ + + D +I E+ L
Sbjct: 64 WTRKDLHK--------IGSLIESPPLYENLTARENLK-VHTTLLGLPDSRIDEV----LN 110
Query: 213 AVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVV 272
V L + + S GMK+R+ +A +++ P++L+ DEPT GLDPI +
Sbjct: 111 IVDLTNTGKKKAKQFSLGMKQRLGIAIALL-------NHPKLLILDEPTNGLDPIGIQEL 163
Query: 273 EDLIRSVHKKG 283
+LIRS ++G
Sbjct: 164 RELIRSFPEQG 174
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 2e-30
Identities = 72/254 (28%), Positives = 112/254 (44%), Gaps = 51/254 (20%)
Query: 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE 163
+H+ + GE V I+GPSG GKST+L +IAG + P G + + + GL +
Sbjct: 11 EHLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQR 70
Query: 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL 223
+ ++FQ LF LTVR+N+G L+ K+ EQ E V + VG+ DRL
Sbjct: 71 ----PVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQ-QEKVVDAAQQVGIADYLDRL 125
Query: 224 PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKG 283
P +LSGG ++RVALAR ++ N +LL DEP + LDP+ + L++ + +
Sbjct: 126 PEQLSGGQRQRVALARCLVRPNP-------ILLLDEPFSALDPLLREEMLALVKQLCSER 178
Query: 284 ENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRL 343
+ L ++VTH S R ++
Sbjct: 179 QRTL---------LMVTHHLSDARAIAS------------------------------QI 199
Query: 344 IFLYEGKIVWQGMT 357
+ +GKI
Sbjct: 200 AVVSQGKIKVVSDC 213
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 3e-30
Identities = 74/236 (31%), Positives = 118/236 (50%), Gaps = 32/236 (13%)
Query: 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE 147
G + ID V ++G +L +S +I GE + +IG SG GK+T+L+ IAG +
Sbjct: 4 GGIRIDHLRV--AYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA--- 58
Query: 148 VYIRGRKRAGLISDEEISGL-----RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQ 202
G I+D +++ + L+FQ+ ALF L V +NV F L KM
Sbjct: 59 ----GLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGL-RAQKMPKAD 113
Query: 203 ISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA 262
I+E V + L VGL LP++LSGGM++R+A+AR+I +EP+VLL DEP +
Sbjct: 114 IAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIA-------IEPDVLLLDEPLS 166
Query: 263 GLDP-IASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQ 317
LD I + + E++ +H++ + + VTH D+ + +
Sbjct: 167 ALDANIRANMREEIAA-LHEELPE--------LTILCVTHDQDDALTLADKAGIMK 213
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 8e-30
Identities = 67/203 (33%), Positives = 96/203 (47%), Gaps = 48/203 (23%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
+I N+ ++G++ +L VS + GE +G++G +G GKST+LKI+AG L PD GEV
Sbjct: 3 MITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTR 62
Query: 151 RGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENV--GFL-LYENSKMRDEQISELV 207
GLR+G + Q L TV + V GF L E +E + L
Sbjct: 63 P-------------KGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLA 109
Query: 208 KENLAAVG---------------------LKGV----EDRLPSELSGGMKKRVALARSII 242
+ + L G+ EDR S LSGG ++RVALAR+++
Sbjct: 110 DPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALL 169
Query: 243 FDNTKESVEPEVLLYDEPTAGLD 265
EP++LL DEPT LD
Sbjct: 170 -------EEPDLLLLDEPTNHLD 185
|
Length = 530 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 9e-30
Identities = 57/133 (42%), Positives = 74/133 (55%), Gaps = 15/133 (11%)
Query: 131 STILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGF 190
ST+LK+I GLL P G + + G GL S ++ RIG+VFQ LF LTVREN+ F
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGL-SSRKLLRKRIGVVFQDPQLFPELTVRENLFF 59
Query: 191 LLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-SELSGGMKKRVALARSIIFDNTKES 249
K D + E L VGL DR P LSGG K+RVA+AR+++
Sbjct: 60 --GLRDKEADARAEEA----LERVGLPDFLDREPVGTLSGGQKQRVAIARALL------- 106
Query: 250 VEPEVLLYDEPTA 262
+P++LL DEPTA
Sbjct: 107 KKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 1e-29
Identities = 62/223 (27%), Positives = 115/223 (51%), Gaps = 24/223 (10%)
Query: 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154
V KSFG+K + +SF++ GE G++GP+G GK+T ++I GLL P +GE+ G
Sbjct: 6 EGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGP 65
Query: 155 RAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAV 214
+ I + RIG + + L+ +TV + + +L E M +I + ++ L +
Sbjct: 66 LSQEIKN------RIGYLPEERGLYPKMTVEDQLKYLA-ELKGMPKAEIQKKLQAWLERL 118
Query: 215 GLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVED 274
+ G + + ELS G ++++ ++I EPE+L+ DEP +GLDP+ +++D
Sbjct: 119 EIVGKKTKKIKELSKGNQQKIQFISAVIH-------EPELLILDEPFSGLDPVNVELLKD 171
Query: 275 LIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQ 317
I + ++G A+ + +H+ + DRL + +
Sbjct: 172 AIFELKEEG----------ATIIFSSHRMEHVEELCDRLLMLK 204
|
Length = 300 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 1e-29
Identities = 75/224 (33%), Positives = 112/224 (50%), Gaps = 23/224 (10%)
Query: 91 LIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG 146
L+ C N+ K + E +L VSF I GE + I+G SG+GKST+L ++ GL P G
Sbjct: 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSG 64
Query: 147 EVYIRGRKRAGLIS--DEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQIS 204
+V G+ + L S E+ ++G ++Q L T ENV L K +I+
Sbjct: 65 DVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPA-EIN 123
Query: 205 ELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGL 264
E LAAVGL+ + PSELSGG ++RVA+AR+++ P ++L DEPT L
Sbjct: 124 SRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALV-------NNPRLVLADEPTGNL 176
Query: 265 DPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRR 308
D + + L+ G N +++VVTH +R
Sbjct: 177 DARNADSIFQLL---------GELNRLQGTAFLVVTHDLQLAKR 211
|
Length = 233 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 2e-29
Identities = 65/175 (37%), Positives = 98/175 (56%), Gaps = 12/175 (6%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
L++ RN+ KSF +H + VS I GE ++G SG GKST+L+++AG P G++ +
Sbjct: 19 LLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIML 78
Query: 151 RGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKEN 210
G +S I ++FQS ALF +TV +N+ F L ++ + E I+ V E
Sbjct: 79 DGVD----LSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAE-IASRVNEM 133
Query: 211 LAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
L V ++ R P +LSGG ++RVALARS+ + P++LL DEP LD
Sbjct: 134 LGLVHMQEFAKRKPHQLSGGQRQRVALARSL-------AKRPKLLLLDEPMGALD 181
|
Length = 377 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 3e-29
Identities = 61/222 (27%), Positives = 97/222 (43%), Gaps = 36/222 (16%)
Query: 98 YKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAG 157
+ E L+ +SF+I GE VGIIG +G GKST+LK+IAG+ P G+V + G+
Sbjct: 34 GRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPL 93
Query: 158 LISDEEISGLRIGLVFQSAALFDSLTVRENVGF--LLYENSKMRDEQISELVKENLAAVG 215
+ +G F LT REN+ L+ + ++I E V E +
Sbjct: 94 IE---------LGAGFDP-----ELTGRENIYLRGLIL---GLTRKEIDEKVDEIIEFAE 136
Query: 216 LKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDL 275
L D+ S GM R+A + + VEP++LL DE A D +
Sbjct: 137 LGDFIDQPVKTYSSGMYARLAFSVAT-------HVEPDILLLDEVLAVGDAAFQEKCLER 189
Query: 276 IRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQ 317
+ + +K + + V+V+H I++ DR +
Sbjct: 190 LNELVEKNK----------TIVLVSHDLGAIKQYCDRAIWLE 221
|
Length = 249 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 4e-29
Identities = 80/241 (33%), Positives = 110/241 (45%), Gaps = 54/241 (22%)
Query: 92 IDCRNVYKSFG----EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE 147
I+ RNV SF E L VS IR GE V IIG G+GKST+LK++ GL P +G
Sbjct: 464 IEFRNV--SFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGS 521
Query: 148 VYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELV 207
V + G I ++ IG V Q LF T+R+N + DE+I
Sbjct: 522 VLLDGVD-IRQIDPADLRR-NIGYVPQDPRLF-YGTLRDN---IALGAPYADDEEI---- 571
Query: 208 KENLAAVGLKGVED---RLPS-----------ELSGGMKKRVALARSIIFDNTKESVEPE 253
L A L GV + R P LSGG ++ VALAR+++ D P
Sbjct: 572 ---LRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRD-------PP 621
Query: 254 VLLYDEPTAGLDPIA-STVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDR 312
+LL DEPT+ +D + + L R + K + V+VTH+ S + VDR
Sbjct: 622 ILLLDEPTSAMDNRSEERFKDRLKRWLAGK------------TLVLVTHRTSLLDL-VDR 668
Query: 313 L 313
+
Sbjct: 669 I 669
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 4e-29
Identities = 71/234 (30%), Positives = 108/234 (46%), Gaps = 38/234 (16%)
Query: 83 EPEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA 142
P + + LI+ +NV K IL +S+++ GE I+GP+G GK+T+L ++ G
Sbjct: 23 HPIEINEPLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHP 82
Query: 143 PDKGEVYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENV------------ 188
P G+V + GR+ E I LR IGLV S+ L + VRE V
Sbjct: 83 PSSGDVTLLGRRFG---KGETIFELRKRIGLV--SSELHERFRVRETVRDVVLSGFFASI 137
Query: 189 GFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248
G + + L++ +G K + DR LS G ++RV +AR+++ D
Sbjct: 138 GIYQEDLTAEDLAAAQWLLEL----LGAKHLADRPFGSLSQGEQRRVLIARALVKD---- 189
Query: 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQ 302
PE+L+ DEP GLD IA E L+ + LA + + VTH
Sbjct: 190 ---PELLILDEPAQGLDLIA---REQLLNRL-----EELAASPGAPALLFVTHH 232
|
Length = 257 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 7e-29
Identities = 71/252 (28%), Positives = 111/252 (44%), Gaps = 62/252 (24%)
Query: 92 IDCRNVYKSF----------------------GEKHILRGVSFKIRHGEAVGIIGPSGTG 129
I+ NV KS+ GE L+ VSF++ GE +G+IG +G G
Sbjct: 1 IELENVSKSYPTYKGGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAG 60
Query: 130 KSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVG 189
KST+L+++AG+ PD G V +RGR +S L +GL LT REN+
Sbjct: 61 KSTLLRLLAGIYPPDSGTVTVRGR----------VSSL-LGL---GGGFNPELTGRENIY 106
Query: 190 F--LLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247
L + ++I E + E + L D S GMK R+A A + +
Sbjct: 107 LNGRLL---GLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALE--- 160
Query: 248 ESVEPEVLLYDEPTAGLDPIASTV--VEDLIRSVHKKGENGLANPGNIASYVVVTHQHST 305
P++LL DE A D A+ + +R + K+G + ++V+H S+
Sbjct: 161 ----PDILLIDEVLAVGD--AAFQEKCQRRLRELLKQG----------KTVILVSHDPSS 204
Query: 306 IRRAVDRLCLFQ 317
I+R DR + +
Sbjct: 205 IKRLCDRALVLE 216
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 7e-29
Identities = 65/232 (28%), Positives = 111/232 (47%), Gaps = 44/232 (18%)
Query: 92 IDCRNVYKSFGEKH-ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
I+ NV S+ EK +L+ ++F I+ GE V I+GP+G GK+T++ ++ P KG++ I
Sbjct: 3 IEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILI 62
Query: 151 RGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVK 208
G I D LR IG+V Q LF S T+ EN + DE++ E K
Sbjct: 63 DGID----IRDISRKSLRSMIGVVLQDTFLF-SGTIMEN---IRLGRPNATDEEVIEAAK 114
Query: 209 ENLAAVGLKGVEDRLP-----------SELSGGMKKRVALARSIIFDNTKESVEPEVLLY 257
E G +LP LS G ++ +A+AR+++ D P++L+
Sbjct: 115 E----AGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRD-------PKILIL 163
Query: 258 DEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA 309
DE T+ +D ++++ + + K + +++ H+ STI+ A
Sbjct: 164 DEATSNIDTETEKLIQEALEKLMKG-----------RTSIIIAHRLSTIKNA 204
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 9e-29
Identities = 70/225 (31%), Positives = 113/225 (50%), Gaps = 44/225 (19%)
Query: 102 GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD 161
G+K +L+ +SF I GE V I+GPSG+GKST++K++ L P GE+ I G I D
Sbjct: 340 GKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGI----DIRD 395
Query: 162 EEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGV 219
+ LR IG+V Q LF T+REN+ + + DE+I E +K
Sbjct: 396 ISLDSLRKRIGIVSQDPLLFSG-TIRENIALGRPDAT---DEEIEEALK----LANAHEF 447
Query: 220 EDRLP-----------SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIA 268
LP LSGG ++R+A+AR+++ + P +L+ DE T+ LD
Sbjct: 448 IANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRN-------PPILILDEATSALDTET 500
Query: 269 STVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313
+++D ++ + K + +++ H+ STI+ A DR+
Sbjct: 501 EALIQDALKKLLKG-----------RTTLIIAHRLSTIKNA-DRI 533
|
Length = 567 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 9e-29
Identities = 73/234 (31%), Positives = 115/234 (49%), Gaps = 47/234 (20%)
Query: 101 FGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKI------------IAGLLAPDKGEV 148
+GE L+ ++ I + +IGPSG GKST+L+ I G L D ++
Sbjct: 13 YGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDI 72
Query: 149 YIRGRKRAGLISDEEISGLRI--GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISEL 206
Y + +++ LRI G+VFQ F +++ ENV + L + + E+
Sbjct: 73 Y----------GNIDVADLRIKVGMVFQKPNPF-PMSIYENVAYGLRAQGIKDKKVLDEV 121
Query: 207 VKENLAAVGL-KGVEDRLPSE---LSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA 262
V+ +L L V+DRL S LSGG ++R+ +AR+I ++EP+V+L DEPT+
Sbjct: 122 VERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTI-------AMEPDVILMDEPTS 174
Query: 263 GLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLF 316
LDPIA+ +E+L+ + K + V+VTH RR DR F
Sbjct: 175 ALDPIATHKIEELMEELKKN-----------YTIVIVTHSMQQARRISDRTAFF 217
|
Length = 249 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 1e-28
Identities = 76/258 (29%), Positives = 121/258 (46%), Gaps = 45/258 (17%)
Query: 69 FNDSSKSENVNTLF-EPEDDGDVLIDCRNV--YKSFGEKHILRGVSFKIRHGEAVGIIGP 125
+ + E TL P+ G+ I+ NV + +L +S +I GE V I+G
Sbjct: 450 LDTPPEQEGDKTLIHLPKLQGE--IEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGR 507
Query: 126 SGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLT 183
SG+GKST+LK++ GL P +G + + G + +++ LR +G V Q LF +
Sbjct: 508 SGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDI----DLASLRRQVGYVLQDPFLFSG-S 562
Query: 184 VRENVGFLLYENSKMRDEQISELVKENLAAV-----GLKGVEDRLPSE----LSGGMKKR 234
+REN + N + DE+I E + LA L D E LSGG ++R
Sbjct: 563 IREN---IALGNPEATDEEIIEAAQ--LAGAHEFIENLPMGYDTPVGEGGANLSGGQRQR 617
Query: 235 VALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIA 294
+ALAR+++ P++LL DE T+ LDP ++ + +G
Sbjct: 618 LALARALLSK-------PKILLLDEATSALDPETEAIILQNLLQ-ILQGRT--------- 660
Query: 295 SYVVVTHQHSTIRRAVDR 312
+++ H+ STIR A DR
Sbjct: 661 -VIIIAHRLSTIRSA-DR 676
|
Length = 709 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 1e-28
Identities = 62/184 (33%), Positives = 107/184 (58%), Gaps = 15/184 (8%)
Query: 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE 162
+ L+ VSF + GE V I+G +G+GKST+ K++ GLL P+ G + + G +S+E
Sbjct: 19 ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMV----LSEE 74
Query: 163 EISGLR--IGLVFQSA-ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGV 219
+ +R +G+VFQ+ F TV+++V F L EN + E++ E V + L VG++
Sbjct: 75 TVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGL-ENIGVPREEMVERVDQALRQVGMEDF 133
Query: 220 EDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSV 279
+R P LSGG K+RVA+A + +++P++++ DE T+ LDP V + +R +
Sbjct: 134 LNREPHRLSGGQKQRVAIAGVL-------ALQPDIIILDEATSMLDPRGRREVLETVRQL 186
Query: 280 HKKG 283
++
Sbjct: 187 KEQK 190
|
Length = 279 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 2e-28
Identities = 62/216 (28%), Positives = 99/216 (45%), Gaps = 27/216 (12%)
Query: 94 CRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGR 153
++ G + + G+SF + GEA+ + GP+G+GK+T+L++IAGLL P G + + G
Sbjct: 5 GEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGG 64
Query: 154 KRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAA 213
D+ + A+ +LTV EN+ F + +E + L A
Sbjct: 65 D-----IDDPDVAEACHYLGHRNAMKPALTVAENLEF--WAAFLGGEE---LDIAAALEA 114
Query: 214 VGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVE 273
VGL + LS G K+RVALAR ++ + + + DEPTA LD A +
Sbjct: 115 VGLAPLAHLPFGYLSAGQKRRVALARLLVSNRP-------IWILDEPTAALDAAAVALFA 167
Query: 274 DLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA 309
+LIR+ H G+ + TH + A
Sbjct: 168 ELIRA-HLAQ-GGIV--------IAATHIPLGLPGA 193
|
Length = 207 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 3e-28
Identities = 71/219 (32%), Positives = 96/219 (43%), Gaps = 55/219 (25%)
Query: 100 SFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP--DKGEVYIRGRKRAG 157
S K +L+ VS K + GE I+GPSG GKST+L +AG GEV I GR
Sbjct: 18 SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPL-- 75
Query: 158 LISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK 217
D+ IG V Q L +LTVRE + F A L+
Sbjct: 76 ---DKRSFRKIIGYVPQDDILHPTLTVRETLMF----------------------AAKLR 110
Query: 218 GVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIR 277
G LSGG +KRV++A ++ P +L DEPT+GLD ++ V L+R
Sbjct: 111 G--------LSGGERKRVSIALELV-------SNPSLLFLDEPTSGLDSSSALQVMSLLR 155
Query: 278 SVHKKGENGLANPGNIASYVVVTHQHST-IRRAVDRLCL 315
LA+ G + + HQ S+ I D+L L
Sbjct: 156 --------RLADTGR--TIICSIHQPSSEIFELFDKLLL 184
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 4e-28
Identities = 62/152 (40%), Positives = 89/152 (58%), Gaps = 28/152 (18%)
Query: 122 IIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG----LR-IGLVFQSA 176
++GPSG GK+T+L+++AG PD G + ++ E+++ LR I +VFQS
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSI---------MLDGEDVTNVPPHLRHINMVFQSY 51
Query: 177 ALFDSLTVRENVGFLLYENSKMR---DEQISELVKENLAAVGLKGVEDRLPSELSGGMKK 233
ALF +TV ENV F L KMR +I V E L V L+ DR P +LSGG ++
Sbjct: 52 ALFPHMTVEENVAFGL----KMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQ 107
Query: 234 RVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
RVALAR+++F +P++LL DEP + LD
Sbjct: 108 RVALARALVF-------KPKILLLDEPLSALD 132
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (275), Expect = 4e-28
Identities = 79/236 (33%), Positives = 117/236 (49%), Gaps = 32/236 (13%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--LAPD---KG 146
ID R+V +G+ H L+G+S +I V IGPSG GKST L++ + L P +G
Sbjct: 4 IDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEG 63
Query: 147 EVYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQIS 204
E+ I GR ++ LR +G+VFQ F ++ ENV + L N + I
Sbjct: 64 EIRIDGRNI--YDKGVQVDELRKNVGMVFQRPNPFPK-SIFENVAYGLRVNGVKDNAFIR 120
Query: 205 ELVKENLAAVGL-KGVEDRLPSE---LSGGMKKRVALARSIIFDNTKESVEPEVLLYDEP 260
+ V+E L L V+D+L LSGG ++R+ +AR++ +V P VLL DEP
Sbjct: 121 QRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAM-------AVSPSVLLMDEP 173
Query: 261 TAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLF 316
+ LDPI++ VE+LI + K + V+VTH R D+ F
Sbjct: 174 ASALDPISTAKVEELIHELKKD-----------YTIVIVTHNMQQAARVSDKTAFF 218
|
Length = 250 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (278), Expect = 4e-28
Identities = 80/272 (29%), Positives = 134/272 (49%), Gaps = 41/272 (15%)
Query: 58 DLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHG 117
D +DG T ++ + G+ +I+ R++ +G++ L VS I
Sbjct: 9 DESSDGLITT---TTATDTTDPSGDPAASSGETVIEARDLNVFYGDEQALDDVSMDIPEN 65
Query: 118 EAVGIIGPSGTGKSTILKIIAGL-----LAPDKGEVYIRGRKRAGLISDEEISGL----R 168
+ +IGPSG GKST L+ I + A +GE+ RG+ + D ++ + R
Sbjct: 66 QVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKN----VYDADVDPVALRRR 121
Query: 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL-KGVEDRLPS-- 225
IG+VFQ F ++ +NV + L + D I E V+E+L L V+D+L S
Sbjct: 122 IGMVFQKPNPFPK-SIYDNVAYGL--KIQGYDGDIDERVEESLRRAALWDEVKDQLDSSG 178
Query: 226 -ELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGE 284
+LSGG ++R+ +AR+I + +PEV+L DEP + LDP+A++ +EDLI + ++
Sbjct: 179 LDLSGGQQQRLCIARAI-------APDPEVILMDEPASALDPVATSKIEDLIEELAEE-- 229
Query: 285 NGLANPGNIASYVVVTHQHSTIRRAVDRLCLF 316
+ V+VTH R D+ +F
Sbjct: 230 ---------YTVVIVTHNMQQAARISDKTAVF 252
|
Length = 285 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 5e-28
Identities = 65/228 (28%), Positives = 98/228 (42%), Gaps = 69/228 (30%)
Query: 92 IDCRNVYKSF----GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE 147
++ NV SF E +LR VSF I GE++ IIGPSG+GKST+ ++I GLL P G
Sbjct: 1 LEVENV--SFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGR 58
Query: 148 VYIRGRKRAGLIS--DEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISE 205
V + G IS D G +G + Q LF ++ EN+
Sbjct: 59 VRLDGAD----ISQWDPNELGDHVGYLPQDDELFSG-SIAENI----------------- 96
Query: 206 LVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
LSGG ++R+ LAR++ + P +L+ DEP + LD
Sbjct: 97 ---------------------LSGGQRQRLGLARALYGN-------PRILVLDEPNSHLD 128
Query: 266 PIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313
+ I ++ G A+ +V+ H+ T+ A DR+
Sbjct: 129 VEGERALNQAIAALKAAG----------ATRIVIAHRPETLASA-DRI 165
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 5e-28
Identities = 63/184 (34%), Positives = 97/184 (52%), Gaps = 15/184 (8%)
Query: 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154
RN+ S GE+ + G+SF + GEA+ + GP+G GK+T+L+I+AGLL PD GEV G
Sbjct: 4 RNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTA 63
Query: 155 RAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAV 214
A + + L +G L L+ EN+ F + Q + +++ LAAV
Sbjct: 64 LAEQRDEPHRNILYLG---HLPGLKPELSALENLHFW---AAIHGGAQRT--IEDALAAV 115
Query: 215 GLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVED 274
GL G ED ++LS G ++R+ALAR + + + DEPT LD ++
Sbjct: 116 GLTGFEDLPAAQLSAGQQRRLALARLWL-------SRAPLWILDEPTTALDKAGVALLAG 168
Query: 275 LIRS 278
L+R+
Sbjct: 169 LLRA 172
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 6e-28
Identities = 91/291 (31%), Positives = 138/291 (47%), Gaps = 62/291 (21%)
Query: 92 IDCRNV-YKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
I+ + V Y SFG K IL+ +S K G I+GPSG GKST++K+I L+ P +G + I
Sbjct: 4 IEFKEVSYSSFG-KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILI 62
Query: 151 RGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVK 208
G I ++ LR IG+VFQ LF+ TV++N+ E M + + V+
Sbjct: 63 DGVD----IKTIDVIDLRRKIGMVFQQPHLFEG-TVKDNI-----EYGPMLKGEKNVDVE 112
Query: 209 ENLAAVGL-KGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPI 267
L+ VGL K R LSGG +RV++AR++ + PEVLL DEPT+ LDP
Sbjct: 113 YYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTL-------ANNPEVLLLDEPTSALDPT 165
Query: 268 ASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVII 327
++ ++E+LI L N N+ + + +TH +R D
Sbjct: 166 STEIIEELIVK--------LKNKMNL-TVIWITHNMEQAKRIGD---------------- 200
Query: 328 LGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHE-FTSSSNPIVQQFASGSLE 377
FL +G +V T++ FT+ N + + F G L+
Sbjct: 201 --------------YTAFLNKGILVEYAKTYDFFTNPQNEVTKLFIQGKLK 237
|
Length = 241 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 7e-28
Identities = 59/196 (30%), Positives = 94/196 (47%), Gaps = 28/196 (14%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
++ + +G + L VSF +R G V ++GP+G GKST+ ++ L +G++ +
Sbjct: 2 LEVAGLSFRYGARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVA 61
Query: 152 GR-----KRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENS--KMRDEQIS 204
G RA L R+G+VFQ L L+VR+N L Y + + +
Sbjct: 62 GHDLRRAPRAAL--------ARLGVVFQQPTLDLDLSVRQN---LRYHAALHGLSRAEAR 110
Query: 205 ELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGL 264
+ E LA +GL D EL+GG ++RV +AR+++ P +LL DEPT GL
Sbjct: 111 ARIAELLARLGLAERADDKVRELNGGHRRRVEIARALLH-------RPALLLLDEPTVGL 163
Query: 265 DPIASTVVEDLIRSVH 280
DP + + V
Sbjct: 164 DPASR---AAITAHVR 176
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 8e-28
Identities = 62/250 (24%), Positives = 106/250 (42%), Gaps = 43/250 (17%)
Query: 70 NDSSKSENVNTLFEPEDDGDVLIDCRNVYKSFGEKH-ILRGVSFKIRHGEAVGIIGPSGT 128
+ K + G ++++ NV K + +L+ +SF+I G+ + I+GP+G
Sbjct: 300 VEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGA 359
Query: 129 GKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQS-AALFDSLTVREN 187
GKST+LK++AG L P G V + ++IG Q L TV E
Sbjct: 360 GKSTLLKLLAGELGPLSGTVKVG-------------ETVKIGYFDQHRDELDPDKTVLEE 406
Query: 188 VGFLLYENSKMRDEQISELVKENLAAVGLKGVE-DRLPSELSGGMKKRVALARSIIFDNT 246
+ S+ + + V+ L G G + ++ LSGG K R+ LA+ ++
Sbjct: 407 L-------SEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLL---- 455
Query: 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTI 306
P +LL DEPT LD + +E+ + G + ++V+H +
Sbjct: 456 ---QPPNLLLLDEPTNHLDIESLEALEEALLDF----------EGTV---LLVSHDRYFL 499
Query: 307 RRAVDRLCLF 316
R R+ L
Sbjct: 500 DRVATRIWLV 509
|
Length = 530 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 8e-28
Identities = 82/300 (27%), Positives = 143/300 (47%), Gaps = 67/300 (22%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL-----APDKG 146
I+ N+ +G H+++GV KI ++GPSG GKST+L+ LL A +G
Sbjct: 5 IETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEG 64
Query: 147 EVYIRGRKRAGLISDEEISGL----RIGLVFQSAALFDSLTVRENVGFLLYENSKMRD-E 201
EV + GR I ++ + +G+VFQ F LT+ +NV + N ++ +
Sbjct: 65 EVRLFGRN----IYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKK 120
Query: 202 QISELVKENLAAVGL-KGVEDRL---PSELSGGMKKRVALARSIIFDNTKESVEPEVLLY 257
++ E V+ L L V+DRL PS LSGG ++R+ +AR++ +++P++LL
Sbjct: 121 ELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARAL-------AMKPKILLM 173
Query: 258 DEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQ 317
DEPTA +DP+ + +E+L+ + K+ + V+VTH + R D +
Sbjct: 174 DEPTANIDPVGTAKIEELLFELKKE-----------YTIVLVTHSPAQAARVSDYVA--- 219
Query: 318 IFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHE-FTSSSNPIVQQFASGSL 376
FLY GK++ G T + F + + + +++ +G+L
Sbjct: 220 ---------------------------FLYLGKLIEVGPTRKVFENPEHELTEKYVTGAL 252
|
Length = 253 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 8e-28
Identities = 61/177 (34%), Positives = 93/177 (52%), Gaps = 4/177 (2%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
+I N+ S + +L GVS +R GE + I+GP+G GKST+LK ++G L+PD GEV +
Sbjct: 1 MIRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTL 60
Query: 151 RGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRD-EQISELVKE 209
G EE++ R ++ Q+++L TV+E V + R+ E+ + +
Sbjct: 61 NGVPLNSW-PPEELARHR-AVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQ 118
Query: 210 NLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDP 266
LAA L G+ R LSGG ++RV LAR ++ L DEPT+ LD
Sbjct: 119 ALAATDLSGLAGRDYRTLSGGEQQRVQLAR-VLAQLWPPVPSGRWLFLDEPTSALDI 174
|
Length = 259 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 9e-28
Identities = 81/249 (32%), Positives = 133/249 (53%), Gaps = 38/249 (15%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
I ++ K +G ++ L VSF+ + G VG +GP+G GKST +KII G L PD G V +
Sbjct: 3 IRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVC 62
Query: 152 GRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFL--LYENSKMRDEQISELVKE 209
G L + +E+ IG + + L+ + VRE + F+ +Y M+ + + + V+E
Sbjct: 63 GED--VLQNPKEVQRN-IGYLPEHNPLYLDMYVREYLQFIAGIY---GMKGQLLKQRVEE 116
Query: 210 NLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAS 269
+ VGL+ + + +LS G ++RV LA+++I D P+VL+ DEPT GLDP +
Sbjct: 117 MIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHD-------PKVLILDEPTTGLDP--N 167
Query: 270 TVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVII-L 328
+VE IR+V + N G + ++ TH I + V+ +C V+II
Sbjct: 168 QLVE--IRNV-------IKNIGKDKTIILSTH----IMQEVEAIC-------DRVIIINK 207
Query: 329 GAVAPDKEV 337
G + DK++
Sbjct: 208 GKIVADKKL 216
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 1e-27
Identities = 66/232 (28%), Positives = 104/232 (44%), Gaps = 30/232 (12%)
Query: 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE 147
+ ++ R + K F VS ++ GE ++G +G GKST++KI+ GL PD GE
Sbjct: 1 MEPALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGE 60
Query: 148 VYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSK---MRDEQIS 204
+ + G++ + S + L IG+V Q L +LTV EN+ L E SK + Q
Sbjct: 61 IRVDGKEVR-IKSPRDAIRLGIGMVHQHFMLVPTLTVAENI-ILGLEPSKGGLIDRRQAR 118
Query: 205 ELVKENLAAVGLKGVEDRLPSELSGGMKKRV----ALARSIIFDNTKESVEPEVLLYDEP 260
+KE GL D ++LS G ++RV AL R +L+ DEP
Sbjct: 119 ARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRG-----------ARLLILDEP 167
Query: 261 TAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDR 312
TA L P ++L + + G + + +TH+ + DR
Sbjct: 168 TAVLTPQE---ADELFEILRRLAAEGK-------TIIFITHKLKEVMAIADR 209
|
Length = 501 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 2e-27
Identities = 64/219 (29%), Positives = 98/219 (44%), Gaps = 39/219 (17%)
Query: 102 GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD 161
G + LR VSF + GE V ++GPSG GKST+L ++ G + P +G + + G A D
Sbjct: 333 GRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADA--D 390
Query: 162 EEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVED 221
+ +I V Q LF T+ EN+ R + ++E L GL
Sbjct: 391 ADSWRDQIAWVPQHPFLFAG-TIAENIRL-------ARPDASDAEIREALERAGLDEFVA 442
Query: 222 RLP-----------SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAST 270
LP + LSGG +R+ALAR+ + D +LL DEPTA LD
Sbjct: 443 ALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRD-------APLLLLDEPTAHLDAETEA 495
Query: 271 VVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA 309
V + +R++ + + ++VTH+ + A
Sbjct: 496 EVLEALRALAQG-----------RTVLLVTHRLALAALA 523
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 2e-27
Identities = 70/234 (29%), Positives = 119/234 (50%), Gaps = 28/234 (11%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--LAPD---KG 146
I +++ +G+ L+ ++ I + +IGPSG GKST L+ + + L P +G
Sbjct: 4 ISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEG 63
Query: 147 EVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISEL 206
EV + G+ D R+G+VFQ F +++ +NV + + +++ E+
Sbjct: 64 EVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPF-PMSIYDNVAYGPRTHGIKDKKKLDEI 122
Query: 207 VKENLAAVGL-KGVEDRLPS---ELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA 262
V+++L L V+DRL LSGG ++R+ +AR++ +VEPEVLL DEPT+
Sbjct: 123 VEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARAL-------AVEPEVLLMDEPTS 175
Query: 263 GLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLF 316
LDPI++ +E+LI+ + K + V+VTH R D+ F
Sbjct: 176 ALDPISTLKIEELIQELKKD-----------YTIVIVTHNMQQASRISDKTAFF 218
|
Length = 250 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 2e-27
Identities = 60/229 (26%), Positives = 99/229 (43%), Gaps = 66/229 (28%)
Query: 95 RNVYKSFGEKHILR---------GVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDK 145
+N+ K F GVSF I+ GE +G++G SG GKST+ ++I GL P
Sbjct: 8 KNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTS 67
Query: 146 GEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISE 205
GE+ G+ + +K+ E+ E
Sbjct: 68 GEILFEGK----------------------------------------DITKLSKEERRE 87
Query: 206 LVKENLAAVGLKG-VEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGL 264
V E L VGL R P ELSGG ++R+ +AR++ + P++++ DEP + L
Sbjct: 88 RVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALA-------LNPKLIVADEPVSAL 140
Query: 265 DPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313
D + +L++ + + E GL +Y+ ++H S +R DR+
Sbjct: 141 DVSVQAQILNLLKDLQE--ELGL-------TYLFISHDLSVVRYISDRI 180
|
Length = 268 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (270), Expect = 3e-27
Identities = 89/298 (29%), Positives = 142/298 (47%), Gaps = 65/298 (21%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--LAPD---KG 146
I+ R++ SFG+ +L GV+ +I ++GPSG+GKST+L++ L L P+ G
Sbjct: 4 IEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSG 63
Query: 147 EVYIRGRKRAGLISDEEISGL--RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDE-QI 203
EVY+ G+ I ++ L R+ +VFQ +L++ ENV L N ++ + ++
Sbjct: 64 EVYLDGQD----IFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKEL 119
Query: 204 SELVKENLAAVGL-KGVEDRLPS---ELSGGMKKRVALARSIIFDNTKESVEPEVLLYDE 259
E V+ L L V+DRL + +LSGG ++R+ +AR++ F PEVLL DE
Sbjct: 120 QERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQ-------PEVLLADE 172
Query: 260 PTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIF 319
PTA LDP + +E L + K + V+VTH R D +
Sbjct: 173 PTANLDPENTAKIESLFLELKKD-----------MTIVLVTHFPQQAARISDYVA----- 216
Query: 320 GHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHE-FTSSSNPIVQQFASGSL 376
FLY+G+IV G T E FT+ + + +++ +G L
Sbjct: 217 -------------------------FLYKGQIVEWGPTREVFTNPRHELTEKYVTGRL 249
|
Length = 250 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 3e-27
Identities = 50/221 (22%), Positives = 87/221 (39%), Gaps = 70/221 (31%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
++ R + K FG L GVS +R GE ++G +G GKST++KI++GL PD GE+ +
Sbjct: 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVD 60
Query: 152 GRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENL 211
G++ + S + I +V+Q
Sbjct: 61 GKEVSFA-SPRDARRAGIAMVYQ------------------------------------- 82
Query: 212 AAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTV 271
LS G ++ V +AR++ + +L+ DEPTA L P
Sbjct: 83 ---------------LSVGERQMVEIARALARN-------ARLLILDEPTAALTPAEVER 120
Query: 272 VEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDR 312
+ +IR + +G + + ++H+ + DR
Sbjct: 121 LFKVIRRLRAQG----------VAVIFISHRLDEVFEIADR 151
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 4e-27
Identities = 76/213 (35%), Positives = 104/213 (48%), Gaps = 41/213 (19%)
Query: 102 GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD 161
G +L GVS + GE V I+GPSG+GKST+L +AGLL P +GEV + G + L D
Sbjct: 346 GAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQD 405
Query: 162 EEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVED 221
E R+ + Q A LFD+ TVREN L DE++ L VGL
Sbjct: 406 EVRR--RVSVCAQDAHLFDT-TVREN---LRLARPDATDEELWAA----LERVGLADWLR 455
Query: 222 RLP-----------SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDP-IAS 269
LP + LSGG ++R+ALAR+++ D +LL DEPT LD A
Sbjct: 456 ALPDGLDTVLGEGGARLSGGERQRLALARALLAD-------APILLLDEPTEHLDAETAD 508
Query: 270 TVVEDLIRSVHKKGENGLANPGNIASYVVVTHQ 302
++EDL+ +G V++TH
Sbjct: 509 ELLEDLL-----AALSGRT-------VVLITHH 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 5e-27
Identities = 56/170 (32%), Positives = 91/170 (53%), Gaps = 15/170 (8%)
Query: 96 NVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKR 155
++Y +G K L ++ + GE + ++GPSG GK+T+L +IAG + G + + G+
Sbjct: 6 HLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPV 65
Query: 156 AGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVG 215
G G G+VFQ+ L V++NV F L + + + Q E+ + L VG
Sbjct: 66 EG-------PGAERGVVFQNEGLLPWRNVQDNVAFGL-QLAGVEKMQRLEIAHQMLKKVG 117
Query: 216 LKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
L+G E R +LSGG ++RV +AR++ + P++LL DEP LD
Sbjct: 118 LEGAEKRYIWQLSGGQRQRVGIARAL-------AANPQLLLLDEPFGALD 160
|
Length = 255 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 6e-27
Identities = 63/219 (28%), Positives = 109/219 (49%), Gaps = 33/219 (15%)
Query: 100 SFGEKH---ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRA 156
SF K IL +S + GE + + G +G GK+T+ KI+AGL+ G + + G+
Sbjct: 6 SFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIK 65
Query: 157 GLISDEEISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAV 214
+ E IG V Q LF +VRE + L + +EQ ++K+ +
Sbjct: 66 ---AKERRK--SIGYVMQDVDYQLFTD-SVREELLLGL-KELDAGNEQAETVLKD----L 114
Query: 215 GLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVED 274
L +++R P LSGG K+R+A+A +++ ++L++DEPT+GLD V +
Sbjct: 115 DLYALKERHPLSLSGGQKQRLAIAAALLSG-------KDLLIFDEPTSGLDYKNMERVGE 167
Query: 275 LIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313
LIR + +G+ + +V+TH + + + DR+
Sbjct: 168 LIRELAAQGK----------AVIVITHDYEFLAKVCDRV 196
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 8e-27
Identities = 59/160 (36%), Positives = 84/160 (52%), Gaps = 16/160 (10%)
Query: 110 VSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGR----KRAGLISDEEIS 165
F + I G SG+GK+T++++IAGL PD+GE+ + GR R G+ E
Sbjct: 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR 75
Query: 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPS 225
RIG VFQ A LF L+VR N L Y + R + + + +G+ + RLP
Sbjct: 76 --RIGYVFQEARLFPHLSVRGN---LRYGMKRARPSERRISFERVIELLGIGHLLGRLPG 130
Query: 226 ELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
LSGG K+RVA+ R+++ P +LL DEP A LD
Sbjct: 131 RLSGGEKQRVAIGRALL-------SSPRLLLMDEPLAALD 163
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 8e-27
Identities = 69/223 (30%), Positives = 108/223 (48%), Gaps = 21/223 (9%)
Query: 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154
V SFG L +SF + GE +IGP+G GK+T++ +I G P +GEV G
Sbjct: 9 DGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDT 68
Query: 155 RAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYEN--------SKMRDEQISEL 206
+ + I+ IG FQ +F++LTVREN+ L + +++R E+
Sbjct: 69 DLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRR- 127
Query: 207 VKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDP 266
+ E LA +GL DRL + LS G K+ + + + D P++LL DEP AG+
Sbjct: 128 IDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQD-------PKLLLLDEPVAGMTD 180
Query: 267 IASTVVEDLIRSVHKKG-----ENGLANPGNIASYVVVTHQHS 304
+ +L++S+ K E+ + IA V V H+ S
Sbjct: 181 AETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGS 223
|
Length = 249 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 1e-26
Identities = 77/226 (34%), Positives = 116/226 (51%), Gaps = 22/226 (9%)
Query: 91 LIDCRNVYKSF--GEK--HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG 146
+I N+ K F G K L VS + G+ G+IG SG GKST+++ + L P G
Sbjct: 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSG 60
Query: 147 EVYIRGRKRAGLISDEEISGLR-IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISE 205
V + G+ L + E R IG++FQ L S TV NV L E ++I
Sbjct: 61 SVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPL-ELDNTPKDEIKR 119
Query: 206 LVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
V E LA VGL D PS LSGG K+RVA+AR++ + P+VLL DE T+ LD
Sbjct: 120 KVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARAL-------ASNPKVLLCDEATSALD 172
Query: 266 PIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVD 311
P + + +L++ ++++ GL + +++TH+ ++R D
Sbjct: 173 PATTQSILELLKEINRR--LGL-------TILLITHEMDVVKRICD 209
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 2e-26
Identities = 76/216 (35%), Positives = 108/216 (50%), Gaps = 27/216 (12%)
Query: 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165
IL GV ++ GE + +IG SG+GKST+L I+AGL GEV + G+ + +E +
Sbjct: 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQM-DEEARA 83
Query: 166 GLR---IGLVFQSAALFDSLTVRENV---GFLLYENSKMRDEQISELVKENLAAVGLKGV 219
LR +G VFQS L +L ENV L E+S+ L L +GL
Sbjct: 84 KLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKAL----LEQLGLGKR 139
Query: 220 EDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSV 279
D LP++LSGG ++RVALAR+ + P+VL DEPT LD + DL+ S+
Sbjct: 140 LDHLPAQLSGGEQQRVALARAF-------NGRPDVLFADEPTGNLDRQTGDKIADLLFSL 192
Query: 280 HKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCL 315
+++ L ++VTH R RL L
Sbjct: 193 NREHGTTL---------ILVTHDLQLAARCDRRLRL 219
|
Length = 228 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 2e-26
Identities = 67/232 (28%), Positives = 114/232 (49%), Gaps = 32/232 (13%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKI-------IAGLLAP 143
+I+ N +GEK ++ V+ KI + IIGPSG GK+T+L+ I G
Sbjct: 3 IIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRV- 61
Query: 144 DKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQI 203
+G++Y +G+ D ++G+VFQ F +++ +NV F + ++
Sbjct: 62 -EGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPF-PMSIYDNVAFGPRIHGVKSKHKL 119
Query: 204 SELVKENLAAVGL----KGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDE 259
+V+E+L L K ++ + LSGG ++R+ +AR++ +VEPEV+L DE
Sbjct: 120 DRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARAL-------AVEPEVILLDE 172
Query: 260 PTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVD 311
PT+ LDPIA+ +E L+ + + + V+VTH R D
Sbjct: 173 PTSALDPIATQRIEKLLEELSEN-----------YTIVIVTHNIGQAIRIAD 213
|
Length = 250 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 2e-26
Identities = 69/204 (33%), Positives = 110/204 (53%), Gaps = 24/204 (11%)
Query: 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE 162
E L V+ I G IG +G+GKSTI++++ GL P +G V + ++
Sbjct: 19 EGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNK 78
Query: 163 EISGLR--IGLVFQ--SAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL-K 217
+I +R +GLVFQ + LF+ TV ++V F +N + E+ L +E LA VG+ +
Sbjct: 79 DIKQIRKKVGLVFQFPESQLFEE-TVLKDVAFGP-QNFGVSQEEAEALAREKLALVGISE 136
Query: 218 GVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIR 277
+ ++ P ELSGG +RVA+A I+ ++EP++L+ DEPTAGLDP + L +
Sbjct: 137 SLFEKNPFELSGGQMRRVAIA-GIL------AMEPKILVLDEPTAGLDPKGRKELMTLFK 189
Query: 278 SVHKKGENGLANPGNIASYVVVTH 301
+H+ G + V+VTH
Sbjct: 190 KLHQSG----------MTIVLVTH 203
|
Length = 280 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 2e-26
Identities = 70/231 (30%), Positives = 109/231 (47%), Gaps = 48/231 (20%)
Query: 92 IDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
I+ NV ++ + +L+ VSF I G+ V I+GPSG+GKSTIL+++ G + I
Sbjct: 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILI 60
Query: 151 RGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVK 208
G+ I + + LR IG+V Q LF+ T+ N+ Y DE++ E K
Sbjct: 61 DGQD----IREVTLDSLRRAIGVVPQDTVLFND-TIGYNIR---YGRPDATDEEVIEAAK 112
Query: 209 --------ENL-----AAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVL 255
VG +G+ +LSGG K+RVA+AR+I+ + P +L
Sbjct: 113 AAQIHDKIMRFPDGYDTIVGERGL------KLSGGEKQRVAIARAILKN-------PPIL 159
Query: 256 LYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTI 306
L DE T+ LD ++ +R V K + +V+ H+ STI
Sbjct: 160 LLDEATSALDTHTEREIQAALRDVSKG-----------RTTIVIAHRLSTI 199
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 2e-26
Identities = 65/184 (35%), Positives = 92/184 (50%), Gaps = 21/184 (11%)
Query: 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154
V K +GE+ +L + I G+ V ++G SG GKST+L+++AGL P GE+ + G
Sbjct: 16 NAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL-LAGTA 74
Query: 155 RAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAV 214
++ L+FQ A L V +NVG L + Q LAAV
Sbjct: 75 PLAEARED------TRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQA-------LAAV 121
Query: 215 GLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVED 274
GL + P+ LSGG K+RVALAR++I P +LL DEP LD + ++D
Sbjct: 122 GLADRANEWPAALSGGQKQRVALARALIH-------RPGLLLLDEPLGALDALTRIEMQD 174
Query: 275 LIRS 278
LI S
Sbjct: 175 LIES 178
|
Length = 257 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 2e-26
Identities = 60/183 (32%), Positives = 99/183 (54%), Gaps = 17/183 (9%)
Query: 105 HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEI 164
L+G+S I G ++GP+G GKST+L + G+ P +G V + GR+ ++ E
Sbjct: 19 KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGRE----VNAENE 74
Query: 165 SGLR--IGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVE 220
+R +GLVFQ +F S TV ++V F N + +++ V+E L AV +
Sbjct: 75 KWVRSKVGLVFQDPDDQVF-SSTVWDDVAFGP-VNMGLDKDEVERRVEEALKAVRMWDFR 132
Query: 221 DRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVH 280
D+ P LS G KKRVA+A + +++P+V++ DEP A LDP + +++ +H
Sbjct: 133 DKPPYHLSYGQKKRVAIAGVL-------AMDPDVIVLDEPMAYLDPRGQETLMEILDRLH 185
Query: 281 KKG 283
+G
Sbjct: 186 NQG 188
|
Length = 274 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 3e-26
Identities = 58/174 (33%), Positives = 90/174 (51%), Gaps = 16/174 (9%)
Query: 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD---KGEVYIR 151
+NV +L V+F I GE V ++GPSG GKST+L + G LA GE+++
Sbjct: 6 KNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLN 65
Query: 152 GRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENL 211
++ L + + +IG++FQ A LF L+V +N+ F L + ++ L
Sbjct: 66 EQRLDMLPAAQR----QIGILFQDALLFPHLSVGQNLLFAL--PATLKGNARRNAANAAL 119
Query: 212 AAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
GL G + P+ LSGG + RVAL R+++ +P+ LL DEP + LD
Sbjct: 120 ERSGLDGAFHQDPATLSGGQRARVALLRALL-------AQPKALLLDEPFSRLD 166
|
Length = 213 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 104 bits (263), Expect = 3e-26
Identities = 68/230 (29%), Positives = 108/230 (46%), Gaps = 32/230 (13%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
++ + SF L +S + GE IIGP+G GK+T++ +I G PD+G V
Sbjct: 2 ILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLF 61
Query: 151 RGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYEN--------SKMRDEQ 202
G GL + +I+ IG FQ +F++LTV EN+ L + ++ E+
Sbjct: 62 GGTDLTGL-PEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEE 120
Query: 203 ISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA 262
++E L +GL DRL LS G K+ + + ++ D P++LL DEP A
Sbjct: 121 KDR-IEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQD-------PKLLLLDEPVA 172
Query: 263 GLDPIASTVVE-----DLIRSVHKKG-----ENGLANPGNIASYVVVTHQ 302
G+ T E +L++S+ K E+ + +IA V V HQ
Sbjct: 173 GM-----TDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQ 217
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 104 bits (263), Expect = 3e-26
Identities = 75/244 (30%), Positives = 120/244 (49%), Gaps = 51/244 (20%)
Query: 92 IDCRNV---YKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV 148
I+ +NV Y S + IL+G+S I G+ V ++G SG GKST++ ++ P GE+
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 149 YIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISEL 206
+ G I D + LR IGLV Q LFD T+ EN+ + + + DE++ E
Sbjct: 61 LLDGVD----IRDLNLRWLRSQIGLVSQEPVLFDG-TIAENIRYGKPDAT---DEEVEEA 112
Query: 207 VKENLAA-------------VGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPE 253
K+ VG +G S+LSGG K+R+A+AR+++ + P+
Sbjct: 113 AKKANIHDFIMSLPDGYDTLVGERG------SQLSGGQKQRIAIARALLRN-------PK 159
Query: 254 VLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313
+LL DE T+ LD + +V++ + K G +V+ H+ STIR A D +
Sbjct: 160 ILLLDEATSALDAESEKLVQEALDRAMK---------GRTT--IVIAHRLSTIRNA-DLI 207
Query: 314 CLFQ 317
+ Q
Sbjct: 208 AVLQ 211
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 7e-26
Identities = 80/238 (33%), Positives = 117/238 (49%), Gaps = 31/238 (13%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILK-------IIAGLLAPD 144
ID +++ +G H + V+ I IGPSG GKST+L+ +I G A
Sbjct: 5 IDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPG--ARV 62
Query: 145 KGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQIS 204
+GEV + G G D IG+VFQ F ++++R+NV L N + +
Sbjct: 63 EGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLD 122
Query: 205 ELVKENLAAVGL-KGVEDRLP---SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEP 260
ELV+++L L V+DRL LSGG ++R+ +AR+I +VEP+VLL DEP
Sbjct: 123 ELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAI-------AVEPDVLLMDEP 175
Query: 261 TAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQI 318
+ LDPI++ +EDLI N L I V+VTH R D+ F +
Sbjct: 176 CSALDPISTLAIEDLI--------NELKQDYTI---VIVTHNMQQAARVSDQTAFFNL 222
|
Length = 258 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 7e-26
Identities = 79/245 (32%), Positives = 123/245 (50%), Gaps = 47/245 (19%)
Query: 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--LAP---- 143
V ++ NV+ FG+ H ++ VS IIGPSG GKST+L+ I + L P
Sbjct: 5 VKLEQLNVH--FGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARV 62
Query: 144 ------DKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENV--GFLLYEN 195
D ++Y RG D R+G+VFQ F ++++ +NV G+ L N
Sbjct: 63 TGKILLDDTDIYDRG-------VDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKL--N 113
Query: 196 SKMRDEQISELVKENLAAVGL-KGVEDRLPS---ELSGGMKKRVALARSIIFDNTKESVE 251
++ + E+V+ +L V L V+DRL S ELSGG ++R+ +AR+I +V+
Sbjct: 114 GRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTI-------AVK 166
Query: 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVD 311
PEV+L DEP + LDPI++ +E+LI + +K + ++VTH R D
Sbjct: 167 PEVILMDEPASALDPISTLKIEELIEELKEK-----------YTIIIVTHNMQQAARVSD 215
Query: 312 RLCLF 316
F
Sbjct: 216 YTAFF 220
|
Length = 252 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 1e-25
Identities = 83/290 (28%), Positives = 124/290 (42%), Gaps = 90/290 (31%)
Query: 91 LIDCRNVYKSFG-----EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDK 145
+I N K+F EK L G+S +I G+ V +IG +G GKST+L IAG L P
Sbjct: 1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTS 60
Query: 146 GEVYIRGR--------KRAGLISDEEISGLRIGLVFQS--AALFDSLTVRENV------- 188
G++ I G KRA L++ VFQ A LT+ EN+
Sbjct: 61 GQILIDGVDVTKKSVAKRANLLAR----------VFQDPLAGTAPELTIEENLALAESRG 110
Query: 189 ---GFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSE---LSGGMKKRVALARSII 242
G N + R +E LA +GL G+E+RL LSGG ++ ++L + +
Sbjct: 111 KKRGLSSALNERRRSS-----FRERLARLGL-GLENRLSDRIGLLSGGQRQALSLLMATL 164
Query: 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQ 302
P++LL DE TA LDP + V +L + ++ + + ++VTH
Sbjct: 165 -------HPPKILLLDEHTAALDPKTAEFVMELTAKIVEE--------HKLTT-LMVTH- 207
Query: 303 HSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIV 352
+ A+D +G+ RLI L+ GKIV
Sbjct: 208 --NMEDALD-------YGN--------------------RLIMLHSGKIV 228
|
Length = 263 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 103 bits (257), Expect = 1e-25
Identities = 67/218 (30%), Positives = 102/218 (46%), Gaps = 26/218 (11%)
Query: 97 VYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRA 156
Y + K IL +S +R GE + I GPSG GKST+LKI+A L++P G + G +
Sbjct: 10 GYLAGDAK-ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVS 68
Query: 157 GLISDEEISGLRIGLVFQSAALFDSLTVRENVGF--LLYENSKMRDEQISELVKENLAAV 214
L E ++ Q+ ALF TV +N+ F + R + L + L
Sbjct: 69 TL--KPEAYRQQVSYCAQTPALFGD-TVEDNLIFPWQIRNRRPDRAAALDLLARFALPDS 125
Query: 215 GLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVED 274
L + +ELSGG K+R+AL R++ F P++LL DE T+ LD +E+
Sbjct: 126 IL----TKNITELSGGEKQRIALIRNLQF-------MPKILLLDEITSALDESNKRNIEE 174
Query: 275 LIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDR 312
+I H+ N+A + +TH R D+
Sbjct: 175 MI---HR-----YVREQNVA-VLWITHDKDQAIRHADK 203
|
Length = 223 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (262), Expect = 1e-25
Identities = 84/259 (32%), Positives = 133/259 (51%), Gaps = 37/259 (14%)
Query: 72 SSKSENVNTLFEPEDDGDVL-IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGK 130
+ K V+ L E + +V I N + KH+L ++ I+ + IGPSG GK
Sbjct: 62 NKKKTQVDLLKEDFNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGK 121
Query: 131 STILK-------IIAGLLAPDKGEVYIRG-RKRAGLISDEEISGLRIGLVFQSAALFDSL 182
ST L+ +I G +GE+Y G R+ IS E+ RIG+VFQ F+ +
Sbjct: 122 STFLRNLNQLNDLIEG--TSHEGEIYFLGTNTRSKKISSLELR-TRIGMVFQKPTPFE-M 177
Query: 183 TVRENVGFLLYENSKMRDEQISE-LVKENLAAVGL----KGVEDRLPSELSGGMKKRVAL 237
++ +NV + N+ + D +I E +V+++L + L K D+ + LSGG ++R+ +
Sbjct: 178 SIFDNVAYGP-RNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCI 236
Query: 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYV 297
AR+I ++EPEVLL DEPT+ LDPIA+ +E+LI + KK S +
Sbjct: 237 ARAI-------ALEPEVLLMDEPTSALDPIATAKIEELILELKKK-----------YSII 278
Query: 298 VVTHQHSTIRRAVDRLCLF 316
+VTH + +R D F
Sbjct: 279 IVTHSMAQAQRISDETVFF 297
|
Length = 329 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 2e-25
Identities = 79/289 (27%), Positives = 141/289 (48%), Gaps = 57/289 (19%)
Query: 97 VYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRA 156
+Y +K IL+ ++ KI + GI+GPSG+GKST+LK++ L+ ++ + G+
Sbjct: 16 LYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLY 75
Query: 157 GLISDEEISGLR----IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLA 212
+I ++ +G+VFQ F L++ +N+ + L + +I ++V+E L
Sbjct: 76 FGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLR 135
Query: 213 AVGL-KGVEDRL---PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIA 268
VGL K V DRL S+LSGG ++R+ +AR++ +++P+VLL DEPT+ +D +
Sbjct: 136 KVGLWKEVYDRLNSPASQLSGGQQQRLTIARAL-------ALKPKVLLMDEPTSMIDIVN 188
Query: 269 STVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIIL 328
S +E LI + + + V+V+H + R D +
Sbjct: 189 SQAIEKLITELKNE-----------IAIVIVSHNPQQVARVADYVA-------------- 223
Query: 329 GAVAPDKEVFFIYRLIFLYEGKIVWQGMTHE-FTSSSNPIVQQFASGSL 376
FLY G++V G ++E FTS N + +++ G +
Sbjct: 224 ----------------FLYNGELVEWGSSNEIFTSPKNELTEKYVIGRI 256
|
Length = 257 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 2e-25
Identities = 73/246 (29%), Positives = 120/246 (48%), Gaps = 37/246 (15%)
Query: 69 FNDSSKSENVNTLFEPEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGT 128
+ + + + D+ ++ RN+ +G+K L +S +I IGPSG
Sbjct: 4 HGITLMALPLLDVLNLSDE-QTALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGC 62
Query: 129 GKSTILKIIAGL--LAPD---KGEVYIRGRKRAGLISD--EEISGLR--IGLVFQSAALF 179
GKST+L+ + L + +GE+ + G+ I D +++ LR +G+VFQ F
Sbjct: 63 GKSTLLRCFNRMNDLVDNCRIEGEIRLDGQN----IYDKKVDVAELRRRVGMVFQRPNPF 118
Query: 180 DSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL-KGVEDRLPSE---LSGGMKKRV 235
++ ENV + L + E V+ +L L V+DRL LSGG ++R+
Sbjct: 119 PK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRL 177
Query: 236 ALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIAS 295
+AR+I ++EPEVLL DEPT+ LDPI++ +E+LI + K +
Sbjct: 178 VIARAI-------AIEPEVLLLDEPTSALDPISTLKIEELITELKSK-----------YT 219
Query: 296 YVVVTH 301
V+VTH
Sbjct: 220 IVIVTH 225
|
Length = 272 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (257), Expect = 2e-25
Identities = 76/244 (31%), Positives = 123/244 (50%), Gaps = 37/244 (15%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--LAP---DKG 146
I+ N+ F + HIL+ V+ I +IGPSG GKST ++ + + L P +G
Sbjct: 4 IEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEG 63
Query: 147 EVYIRGRKRAGLISDEEISGL----RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQ 202
+Y+ G I D + + ++G+VFQ F ++ +NV + L + + ++
Sbjct: 64 HIYLDGVD----IYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDF 118
Query: 203 ISELVKENLAAVGL-KGVEDRLPSE---LSGGMKKRVALARSIIFDNTKESVEPEVLLYD 258
I E V+E+L A L V+D+L LSGG ++R+ +AR+I +V PEV+L D
Sbjct: 119 IEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTI-------AVSPEVILMD 171
Query: 259 EPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQI 318
EP + LDPI++T +EDLI + + + V+VTH R V + F +
Sbjct: 172 EPCSALDPISTTKIEDLIHKLKED-----------YTIVIVTHNMQQATR-VSKYTSFFL 219
Query: 319 FGHI 322
G I
Sbjct: 220 NGEI 223
|
Length = 250 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 2e-25
Identities = 76/211 (36%), Positives = 113/211 (53%), Gaps = 34/211 (16%)
Query: 88 GDVLIDCRNV---YKSFGE---KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL 141
+ +I C+NV Y+S E K L V+ +++ GE + I+G +G+GKSTI K + LL
Sbjct: 1 MNEMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALL 60
Query: 142 APDKGEVYIRGRKRAGLISDEE----ISGLRIGLVFQS------AALFDSLTVRENVGFL 191
P +G+VY+ G SDEE I + G+VFQ+ A + V E+V F
Sbjct: 61 IPSEGKVYVDGLD----TSDEENLWDIRN-KAGMVFQNPDNQIVATI-----VEEDVAFG 110
Query: 192 LYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251
EN + E+I E V E+L VG+ P LSGG K+RVA+A + ++
Sbjct: 111 P-ENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGIL-------AMR 162
Query: 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKK 282
PE +++DEPTA LDP V + I+ ++KK
Sbjct: 163 PECIIFDEPTAMLDPSGRREVVNTIKELNKK 193
|
Length = 280 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 2e-25
Identities = 69/262 (26%), Positives = 109/262 (41%), Gaps = 63/262 (24%)
Query: 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDK---GEVYIRGRKR-AGL 158
IL VS + G+ + I+G SG+GK+T+L I+G + G++ G+ R
Sbjct: 19 YARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQ 78
Query: 159 ISDEEISGLRIGLVFQSAALFDSLTVRENVGF--LLYENSKMRDEQISELVK-ENLAAVG 215
+ V Q L LTVRE + + +L K D + V+ L +
Sbjct: 79 FQK------CVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLA 132
Query: 216 LKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDP-IASTVVED 274
L + L +SGG ++RV++A ++ +P+VL+ DEPT+GLD A +V
Sbjct: 133 LTRIGGNLVKGISGGERRRVSIAVQLL-------WDPKVLILDEPTSGLDSFTALNLVST 185
Query: 275 LIRSVHKKGENGLANPGNIASYVVVT-HQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAP 333
L + LA I V++T HQ R LF++F I
Sbjct: 186 LSQ---------LARRNRI---VILTIHQ--------PRSDLFRLFDRI----------- 214
Query: 334 DKEVFFIYRLIFLYEGKIVWQG 355
+ L G+IV+ G
Sbjct: 215 ----------LLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 3e-25
Identities = 76/210 (36%), Positives = 113/210 (53%), Gaps = 23/210 (10%)
Query: 98 YKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAG 157
YK+ E+ L V+ I G V IIG +G+GKST+L+ + GLL P G V I R
Sbjct: 14 YKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITA 73
Query: 158 LISDEEISGLR--IGLVFQ--SAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAA 213
++++ LR +G+VFQ LF+ TV +++ F N + +E + +E +
Sbjct: 74 GKKNKKLKPLRKKVGIVFQFPEHQLFEE-TVEKDICFGP-MNFGVSEEDAKQKAREMIEL 131
Query: 214 VGL-KGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVV 272
VGL + + R P ELSGG +RVA+A + ++EPEVL+ DEPTAGLDP +
Sbjct: 132 VGLPEELLARSPFELSGGQMRRVAIAGVL-------AMEPEVLVLDEPTAGLDPKGRKEM 184
Query: 273 EDLIRSVHKKGENGLANPGNIASYVVVTHQ 302
++ +HK E GL + V+VTH
Sbjct: 185 MEMFYKLHK--EKGL-------TTVLVTHS 205
|
Length = 290 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 3e-25
Identities = 55/150 (36%), Positives = 87/150 (58%), Gaps = 24/150 (16%)
Query: 122 IIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE------ISGLRIGLVFQS 175
+ GPSG+GK++++ +IAGL PD+G + + GR ++ D E RIG VFQ
Sbjct: 29 LFGPSGSGKTSLINMIAGLTRPDEGRIELNGR----VLVDAEKGIFLPPEKRRIGYVFQD 84
Query: 176 AALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRV 235
A LF TVR N+ + ++++ + + +Q+ L +G++ + DR P LSGG K+RV
Sbjct: 85 ARLFPHYTVRGNLRYGMWKSMRAQFDQLVAL-------LGIEHLLDRYPGTLSGGEKQRV 137
Query: 236 ALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
A+ R+++ PE+LL DEP A LD
Sbjct: 138 AIGRALLTA-------PELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 101 bits (252), Expect = 3e-25
Identities = 57/164 (34%), Positives = 88/164 (53%), Gaps = 17/164 (10%)
Query: 102 GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD 161
+ + G+SF + GEA+ + GP+G+GK+T+L+I+AGL P G V + G
Sbjct: 11 DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDS 70
Query: 162 EEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVED 221
L +G + + +L+V EN+ F ++S DEQ+ +E LA VGL G ED
Sbjct: 71 IARGLLYLG---HAPGIKTTLSVLENLRFWHADHS---DEQV----EEALARVGLNGFED 120
Query: 222 RLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
R ++LS G ++RVALAR ++ + + DEPT LD
Sbjct: 121 RPVAQLSAGQQRRVALARLLL-------SGRPLWILDEPTTALD 157
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 3e-25
Identities = 64/172 (37%), Positives = 87/172 (50%), Gaps = 14/172 (8%)
Query: 109 GVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR---GRKRAGLISDEEIS 165
S I GE ++G SG+GKST+L+ + GL +G V ++ G +
Sbjct: 42 NASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLR 101
Query: 166 GLR---IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDR 222
LR + +VFQ AL TV ENV F L E M + + V E L VGL DR
Sbjct: 102 RLRTHRVSMVFQQFALLPWRTVEENVAFGL-EMQGMPKAERRKRVDEQLELVGLAQWADR 160
Query: 223 LPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVED 274
P ELSGGM++RV LAR+ + E +LL DEP + LDP+ T ++D
Sbjct: 161 KPGELSGGMQQRVGLARAF-------ATEAPILLMDEPFSALDPLIRTQLQD 205
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 4e-25
Identities = 68/233 (29%), Positives = 114/233 (48%), Gaps = 28/233 (12%)
Query: 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--LAPD- 144
++++ +N+ +GEKH L ++ I +IGPSG GKST+L+ + L P
Sbjct: 3 MEIILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGC 62
Query: 145 --KGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQ 202
G++ G +D +IG+VFQ F ++ ENV + + + +
Sbjct: 63 RITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKT 121
Query: 203 ISELVKENLAAVGL-KGVEDRLPSE---LSGGMKKRVALARSIIFDNTKESVEPEVLLYD 258
+ +V+++L L V+DRL LSGG ++R+ +AR++ +V PEV+L D
Sbjct: 122 LDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTL-------AVNPEVILMD 174
Query: 259 EPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVD 311
EP + LDPIA+ +EDLI + K+ + ++VTH R D
Sbjct: 175 EPCSALDPIATAKIEDLIEDLKKE-----------YTVIIVTHNMQQAARVSD 216
|
Length = 253 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 5e-25
Identities = 75/272 (27%), Positives = 120/272 (44%), Gaps = 54/272 (19%)
Query: 73 SKSENVNTLFEPEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKST 132
+ + + ++ + R+V +GEK L V I IGPSG GKST
Sbjct: 1 YEMADEKAADKKATATEIKMRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKST 60
Query: 133 ILKI------------IAGLLAPDKGEVYIRG----RKRAGLISDEEISGLRIGLVFQSA 176
L+ + G + D ++Y RA R+G+VFQ
Sbjct: 61 FLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRA-----------RVGMVFQKP 109
Query: 177 ALFDSLTVRENVGF--LLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSE---LSGG 230
F ++ ENV + ++ ++ + E + E+V+ +L GL V+DRL LSGG
Sbjct: 110 NPFPK-SIYENVAYGPRIHGLARSKAE-LDEIVETSLRKAGLWEEVKDRLHEPGTGLSGG 167
Query: 231 MKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANP 290
++R+ +AR+I +V PEV+L DEP + LDPIA+ VE+LI + +
Sbjct: 168 QQQRLCIARAI-------AVSPEVILMDEPCSALDPIATAKVEELIDELRQN-------- 212
Query: 291 GNIASYVVVTHQHSTIRRAVDRLCLFQIFGHI 322
+ V+VTH R R F + G++
Sbjct: 213 ---YTIVIVTHSMQQAARVSQRTAFFHL-GNL 240
|
Length = 267 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 5e-25
Identities = 66/219 (30%), Positives = 110/219 (50%), Gaps = 41/219 (18%)
Query: 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154
N+ +G+ HILRGVS ++ GE ++G +G GK+T+LK + GLL G + + G
Sbjct: 4 SNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDG-- 61
Query: 155 RAGLISDEEISGLR--------IGLVFQSAALFDSLTVREN--VGFLLYENSKMRDEQIS 204
E+I+ L I V Q +F LTV EN G R +I
Sbjct: 62 -------EDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGL---AALPRRSRKIP 111
Query: 205 ELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGL 264
+ + E L V LK + R +LSGG ++++A+AR+++ P++LL DEPT G+
Sbjct: 112 DEIYE-LFPV-LKEMLGRRGGDLSGGQQQQLAIARALV-------TRPKLLLLDEPTEGI 162
Query: 265 DPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQH 303
P ++++D+ R + + L G +A +++ Q+
Sbjct: 163 QP---SIIKDIGRVIRR-----LRAEGGMA--ILLVEQY 191
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 7e-25
Identities = 63/182 (34%), Positives = 92/182 (50%), Gaps = 22/182 (12%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
+I NV KS+G K +L VS I G IIGP+G GKST+L +++ LL D GE+ I
Sbjct: 1 MITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITI 60
Query: 151 RGRKRAGLISDE---EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMR----DEQI 203
G + S E ++S L+ Q + LTVR+ VGF + S+ R D +I
Sbjct: 61 DGLELTSTPSKELAKKLSILK-----QENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRI 115
Query: 204 SELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAG 263
+ E + + L+ + DR ELSGG ++R +A + D + +L DEP
Sbjct: 116 ---INEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDT-------DYVLLDEPLNN 165
Query: 264 LD 265
LD
Sbjct: 166 LD 167
|
Length = 252 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 7e-25
Identities = 72/238 (30%), Positives = 122/238 (51%), Gaps = 33/238 (13%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--LAPD---K 145
L+ ++V +G+K ++ V+ ++ G +IGPSG GK+T L+ I + L P
Sbjct: 4 LLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVT 63
Query: 146 GEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENV--GFLLYENSKMRD-EQ 202
G + + G+ G D R+G+VFQ F +++V +NV G L + +RD +
Sbjct: 64 GRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKL---AGIRDRDH 120
Query: 203 ISELVKENLAAVGL-KGVEDRLPSE---LSGGMKKRVALARSIIFDNTKESVEPEVLLYD 258
+ E+ + +L L V+DRL + LSGG ++R+ +AR++ +VEPE+LL D
Sbjct: 121 LMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARAL-------AVEPEILLMD 173
Query: 259 EPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLF 316
EPT+ LDP ++ +EDL+ + K + + ++VTH R D F
Sbjct: 174 EPTSALDPASTARIEDLMTDLKK-----------VTTIIIVTHNMHQAARVSDTTSFF 220
|
Length = 252 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 8e-25
Identities = 80/255 (31%), Positives = 129/255 (50%), Gaps = 45/255 (17%)
Query: 90 VLIDCRNVYKSFGE------KHILRGVS------------------FKIRHGEAVGIIGP 125
+ ++ +N+YK FGE K+I +G+S I GE I+G
Sbjct: 3 IKLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGL 62
Query: 126 SGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR---IGLVFQSAALFDSL 182
SG+GKST+++++ L+ P +G+V I G A ISD E+ +R I +VFQS AL +
Sbjct: 63 SGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAK-ISDAELREVRRKKIAMVFQSFALMPHM 121
Query: 183 TVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSII 242
TV +N F + E + + E+ E + L VGL+ P ELSGGM++RV LAR++
Sbjct: 122 TVLDNTAFGM-ELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARAL- 179
Query: 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQ 302
++ P++LL DE + LDP+ T ++D + + K + + V ++H
Sbjct: 180 ------AINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQR---------TIVFISHD 224
Query: 303 HSTIRRAVDRLCLFQ 317
R DR+ + Q
Sbjct: 225 LDEAMRIGDRIAIMQ 239
|
Length = 400 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 1e-24
Identities = 66/206 (32%), Positives = 108/206 (52%), Gaps = 25/206 (12%)
Query: 84 PEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--L 141
I RN+ +G+ H L+ ++ I + IGPSG GKST+L+ + L
Sbjct: 6 MVATAPSKIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYEL 65
Query: 142 APDK---GEVYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGF--LLYE 194
P++ GE+ + G L ++I+ LR +G+VFQ F +++ +N+ F L+E
Sbjct: 66 YPEQRAEGEILLDGENI--LTPKQDIALLRAKVGMVFQKPTPF-PMSIYDNIAFGVRLFE 122
Query: 195 NSKMRDEQISELVKENLAAVGLKG-VEDRLPSE---LSGGMKKRVALARSIIFDNTKESV 250
K+ ++ E V+ L L V+D+L LSGG ++R+ +AR I ++
Sbjct: 123 --KLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGI-------AI 173
Query: 251 EPEVLLYDEPTAGLDPIASTVVEDLI 276
PEVLL DEP + LDPI++ +E+LI
Sbjct: 174 RPEVLLLDEPCSALDPISTGRIEELI 199
|
Length = 260 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 1e-24
Identities = 74/273 (27%), Positives = 115/273 (42%), Gaps = 70/273 (25%)
Query: 102 GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD---KGEVYIRGRKRAGL 158
KH+L+ VS + GE + ++G SG GK+T++ +A G V + G
Sbjct: 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMP---- 91
Query: 159 ISDEEISGLRIGLVFQSAALFDSLTVRENVGF---LLYENSKMRDEQISELVKENLAAVG 215
I +E+ V Q +LTVRE++ F L + E+ E V E L A+G
Sbjct: 92 IDAKEMR-AISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKR-ERVDEVLQALG 149
Query: 216 LK-------GVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDP-I 267
L+ GV R+ LSGG +KR+A A ++ D P +L DEPT+GLD +
Sbjct: 150 LRKCANTRIGVPGRVKG-LSGGERKRLAFASELLTD-------PPLLFCDEPTSGLDSFM 201
Query: 268 ASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVII 327
A +VV+ L GLA G + HQ
Sbjct: 202 AYSVVQVL---------KGLAQKGKTI--ICTIHQ------------------------- 225
Query: 328 LGAVAPDKEVFFIY-RLIFLYEGKIVWQGMTHE 359
P E+F ++ ++I + EG++ + G +
Sbjct: 226 -----PSSELFELFDKIILMAEGRVAYLGSPDQ 253
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 1e-24
Identities = 75/245 (30%), Positives = 119/245 (48%), Gaps = 47/245 (19%)
Query: 84 PEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP 143
P G + ++ +K IL+G+SF ++ GEA+GIIGPSG+GKST+ +++ G+ P
Sbjct: 329 PAPQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPP 388
Query: 144 DKGEVYIRGRKRAGLIS-DEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQ 202
G V + G A L D E G IG + Q LFD T+ EN+ ++ +E
Sbjct: 389 TSGSVRLDG---ADLRQWDREQLGRHIGYLPQDVELFDG-TIAENI-------ARFGEEA 437
Query: 203 ISELVKENLAAVGLKGVED---RLP-----------SELSGGMKKRVALARSIIFDNTKE 248
E V + A L GV + RLP + LSGG ++R+ALAR++ D
Sbjct: 438 DPEKV---IEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGD---- 490
Query: 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRR 308
P +++ DEP + LD + I + +G + VV+ H+ S +
Sbjct: 491 ---PFLVVLDEPNSNLDSEGEAALAAAILAAKARG----------GTVVVIAHRPSAL-A 536
Query: 309 AVDRL 313
+VD++
Sbjct: 537 SVDKI 541
|
Length = 580 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 99 bits (250), Expect = 1e-24
Identities = 68/190 (35%), Positives = 91/190 (47%), Gaps = 36/190 (18%)
Query: 92 IDCRNVYKSF--GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149
I+ RNV S+ E L VS IR GE V IIG G+GKST+LK++AGL P G V
Sbjct: 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVL 62
Query: 150 IRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKE 209
+ G + ++ IG V Q LF T+R+N + DE+I
Sbjct: 63 LDGTD-IRQLDPADLRR-NIGYVPQDVTLF-YGTLRDN---ITLGAPLADDERI------ 110
Query: 210 NLAAVGLKGVED---RLP-----------SELSGGMKKRVALARSIIFDNTKESVEPEVL 255
L A L GV D + P LSGG ++ VALAR+++ D P +L
Sbjct: 111 -LRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLND-------PPIL 162
Query: 256 LYDEPTAGLD 265
L DEPT+ +D
Sbjct: 163 LLDEPTSAMD 172
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 2e-24
Identities = 80/260 (30%), Positives = 120/260 (46%), Gaps = 54/260 (20%)
Query: 85 EDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKI-------- 136
E DGD + ++ +G+ H L+GVS I +IGPSG GKST L+
Sbjct: 39 EFDGDAKLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRI 98
Query: 137 ----IAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENV---- 188
I G + D ++Y G L+ + R+G+VFQS F ++REN+
Sbjct: 99 KAARIDGSVELDGQDIYQDG---VNLVELRK----RVGMVFQSPNPFPK-SIRENISYGP 150
Query: 189 --------GFLLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSE---LSGGMKKRVA 236
G L + + ELV+ +L L V DRL LSGG ++R+
Sbjct: 151 RKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLC 210
Query: 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASY 296
+AR + +V+PEV+L DEP + LDPIA++ +EDLI + ++ +
Sbjct: 211 IARCL-------AVDPEVILMDEPASALDPIATSKIEDLIEELAEE-----------YTV 252
Query: 297 VVVTHQHSTIRRAVDRLCLF 316
VVVTH R D+ +F
Sbjct: 253 VVVTHNMQQAARISDQTAVF 272
|
Length = 305 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 99.8 bits (249), Expect = 2e-24
Identities = 73/232 (31%), Positives = 108/232 (46%), Gaps = 27/232 (11%)
Query: 87 DGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG 146
+ L+ +NV G+ IL +SF +R GE I GPSG GKST+LKI+A L++P G
Sbjct: 3 ENSPLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSG 62
Query: 147 EVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQ--IS 204
+ G + L EI ++ Q+ LF TV +N+ F ++ D +
Sbjct: 63 TLLFEGEDISTL--KPEIYRQQVSYCAQTPTLFGD-TVYDNLIFPWQIRNQQPDPAIFLD 119
Query: 205 ELVKENLAAVGL-KGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAG 263
+L + L L K + ELSGG K+R++L R++ F P+VLL DE T+
Sbjct: 120 DLERFALPDTILTKNIA-----ELSGGEKQRISLIRNLQF-------MPKVLLLDEITSA 167
Query: 264 LDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCL 315
LD V ++I + NIA + VTH I A + L
Sbjct: 168 LDESNKHNVNEII--------HRYVREQNIAV-LWVTHDKDEINHADKVITL 210
|
Length = 225 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 2e-24
Identities = 82/282 (29%), Positives = 127/282 (45%), Gaps = 50/282 (17%)
Query: 58 DLGTDGFPATKFND-SSKSENVNTLFEPEDDGDVLIDCRNVYKSF-GEKH-ILRGVSFKI 114
LG A + ND + V E ++ RNV ++ G++ L+ + +
Sbjct: 302 HLGQVIASARRLNDILDQKPEVTFPDEQTATTGQALELRNVSFTYPGQQTKALKNFNLTL 361
Query: 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQ 174
GE V I+G SG+GKST+L+++AG P +G + + G + A L DE+ I ++ Q
Sbjct: 362 AQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASL--DEQALRETISVLTQ 419
Query: 175 SAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSE-------- 226
LF T+R+N L N DE++ ++ VGL E L S
Sbjct: 420 RVHLFSG-TLRDN---LRLANPDASDEELWAALQ----QVGL---EKLLESAPDGLNTWL 468
Query: 227 ------LSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVH 280
LSGG ++R+ALAR+++ D + L DEPT GLDPI V L+ H
Sbjct: 469 GEGGRRLSGGERRRLALARALLHDAP-------LWLLDEPTEGLDPITERQVLALLFE-H 520
Query: 281 KKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHI 322
+G + ++VTH+ + R DR+ G I
Sbjct: 521 AEG----------KTLLMVTHRLRGLERM-DRII-VLDNGKI 550
|
Length = 573 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 2e-24
Identities = 76/249 (30%), Positives = 131/249 (52%), Gaps = 39/249 (15%)
Query: 84 PEDDGDVLIDCRNVYKSF-GEKHILR----------GVSFKIRHGEAVGIIGPSGTGKST 132
+D VL++ ++ F + LR G+S +R G+ +G++G SG+GKST
Sbjct: 269 LPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKST 328
Query: 133 ILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGF 190
+ + L+ +GE+ G+ GL S +E+ LR + +VFQ + SL+ R VG
Sbjct: 329 LGLALLRLIPS-QGEIRFDGQDIDGL-SRKEMRPLRRRMQVVFQDP--YGSLSPRMTVGQ 384
Query: 191 LLYENSKMRDEQIS-----ELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALARSIIFD 244
++ E ++ + ++S + V E L VGL +R P E SGG ++R+A+AR++I
Sbjct: 385 IIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALI-- 442
Query: 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS 304
++PE++L DEPT+ LD V DL+R + +K +GL SY+ ++H +
Sbjct: 443 -----LKPELILLDEPTSALDRSVQAQVLDLLRDLQQK--HGL-------SYLFISHDLA 488
Query: 305 TIRRAVDRL 313
+R R+
Sbjct: 489 VVRALCHRV 497
|
Length = 534 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 3e-24
Identities = 80/268 (29%), Positives = 116/268 (43%), Gaps = 70/268 (26%)
Query: 88 GDVLIDCRNVYKSF-----GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA 142
G+ +I RNV K + G + VS +++ GE GI+G SG GK+T+ KIIAG+L
Sbjct: 276 GEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE 335
Query: 143 PDKGEVYIR--------------GRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENV 188
P GEV +R GR RA IG++ Q L+ TV +N+
Sbjct: 336 PTSGEVNVRVGDEWVDMTKPGPDGRGRAKRY---------IGILHQEYDLYPHRTVLDNL 386
Query: 189 GFLLYENSKMRDEQIS-ELVKE--------NLAAVGL-----KGVEDRLPSELSGGMKKR 234
E I EL E L VG + + D+ P ELS G + R
Sbjct: 387 -----------TEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHR 435
Query: 235 VALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIA 294
VALA+ +I EP +++ DEPT +DPI V I ++ E
Sbjct: 436 VALAQVLI-------KEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQ--------- 479
Query: 295 SYVVVTHQHSTIRRAVDRLCLFQIFGHI 322
++++V+H + DR L + G I
Sbjct: 480 TFIIVSHDMDFVLDVCDRAALMR-DGKI 506
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 99.1 bits (247), Expect = 5e-24
Identities = 70/229 (30%), Positives = 110/229 (48%), Gaps = 36/229 (15%)
Query: 101 FGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--LAPD---KGEVYIRGRKR 155
+G+ L +S + + +IGPSG GKST L+ + + L P +GE+ + G
Sbjct: 16 YGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGEN- 74
Query: 156 AGLISDEEISGL----RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENL 211
I D + + R+G+VFQ F ++ ENV + L N ++E V+ +L
Sbjct: 75 ---IYDPHVDVVELRRRVGMVFQKPNPFPK-SIFENVAYGLRVNGVKDKAYLAERVERSL 130
Query: 212 AAVGL-KGVEDRLPSE---LSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPI 267
L V+DRL LSGG ++R+ +AR++ +VEPEVLL DEP + LDPI
Sbjct: 131 RHAALWDEVKDRLHESALGLSGGQQQRLCIARAL-------AVEPEVLLMDEPASALDPI 183
Query: 268 ASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLF 316
A+ +E+LI + + + ++VTH R D F
Sbjct: 184 ATQKIEELIHELKAR-----------YTIIIVTHNMQQAARVSDVTAFF 221
|
Length = 253 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 99.2 bits (247), Expect = 6e-24
Identities = 69/227 (30%), Positives = 117/227 (51%), Gaps = 32/227 (14%)
Query: 101 FGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL--APD---KGEVYIRGRKR 155
+G+ H L+ ++ I E IIGPSG GKST +K + ++ P+ GE+ G
Sbjct: 22 YGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNI 81
Query: 156 AGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAA 213
L ++ LR IG+VFQ F ++ +NV + + +++ E+V+++L
Sbjct: 82 --LKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKD 138
Query: 214 VGL-KGVEDRLPSE---LSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAS 269
V L V+DRL ++ LSGG ++R+ +AR++ + P+VLL DEPT+ LDP+++
Sbjct: 139 VALWDEVKDRLHTQALSLSGGQQQRLCIARAL-------ATNPDVLLMDEPTSALDPVST 191
Query: 270 TVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLF 316
+E+LI + +K + V+VTH R D+ F
Sbjct: 192 RKIEELILKLKEK-----------YTIVIVTHNMQQAARVSDQTAFF 227
|
Length = 259 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 7e-24
Identities = 73/275 (26%), Positives = 115/275 (41%), Gaps = 44/275 (16%)
Query: 54 APPRDLGTDGFPAT--------KFNDSSKSENVNT----LFEPEDDGDVLIDCRNVYKSF 101
P RDLG+ F A K +S E ++ + I N+ +
Sbjct: 272 QPLRDLGSF-FHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRY 330
Query: 102 GE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS 160
+ K L ++ I+ G+ ++G SG GKST+L ++ G LAP +GE+ + G L S
Sbjct: 331 PDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDL-S 389
Query: 161 DEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKE-NLAAV----- 214
E +I V Q+ LF T+REN+ DE+I + + L
Sbjct: 390 PEAWRK-QISWVSQNPYLFAG-TIRENILLA---RPDASDEEIIAALDQAGLLEFVPKPD 444
Query: 215 GLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVED 274
GL V + LSGG +R+ALAR+++ +LL DEPTA LD ++
Sbjct: 445 GLDTVIGEGGAGLSGGQAQRLALARALLSP-------ASLLLLDEPTAHLDAETEQIILQ 497
Query: 275 LIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA 309
++ K + +V+TH+ A
Sbjct: 498 ALQE-LAKQ----------KTVLVITHRLEDAADA 521
|
Length = 559 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 98.6 bits (246), Expect = 9e-24
Identities = 68/218 (31%), Positives = 107/218 (49%), Gaps = 26/218 (11%)
Query: 102 GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD 161
+ +L VS ++ GE V ++G SG GKST+ +++ GL +P +G V RG A L +
Sbjct: 23 QHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKL-NR 81
Query: 162 EEISGLR--IGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK 217
+ R I +VFQ + A+ TVRE + L + + E L AV L
Sbjct: 82 AQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLD 141
Query: 218 -GVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLI 276
V D+ P +LSGG +RV LAR++ +VEP++L+ DE + LD + V L+
Sbjct: 142 DSVLDKRPPQLSGGQLQRVCLARAL-------AVEPKLLILDEAVSNLDLVLQAGVIRLL 194
Query: 277 RSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLC 314
+ + ++ G A + +TH R V+R C
Sbjct: 195 KKLQQQF--GTA-------CLFITHD----LRLVERFC 219
|
Length = 268 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 97.9 bits (244), Expect = 1e-23
Identities = 72/284 (25%), Positives = 126/284 (44%), Gaps = 70/284 (24%)
Query: 92 IDCRNVYKSFG--EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149
I +V + IL +S +I+ GE VGI+G SG+GKST+ K+I P+ G V
Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60
Query: 150 IRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFL--------LYENSKMRD- 200
+ G A ++D ++G+V Q LF + ++R+N+ + E +K+
Sbjct: 61 VDGHDLA--LADPAWLRRQVGVVLQENVLF-NRSIRDNIALADPGMSMERVIEAAKLAGA 117
Query: 201 -EQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDE 259
+ ISEL + VG +G LSGG ++R+A+AR++I + P +L++DE
Sbjct: 118 HDFISELPEGYDTIVGEQGA------GLSGGQRQRIAIARALIHN-------PRILIFDE 164
Query: 260 PTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIF 319
T+ LD + + +R++H +++ H+ ST++ A
Sbjct: 165 ATSALDYESEHAI---MRNMHDICAGRTV--------IIIAHRLSTVKNA---------- 203
Query: 320 GHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSS 363
R+I + +G+IV QG E +
Sbjct: 204 ---------------------DRIIVMEKGRIVEQGSHDELLAE 226
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 99.4 bits (248), Expect = 1e-23
Identities = 71/242 (29%), Positives = 118/242 (48%), Gaps = 53/242 (21%)
Query: 92 IDCRNVYKSFGEK-----HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG 146
I +N+ K F +K L VS +I GE + IIG +G+GK+T ++ + LL PD G
Sbjct: 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTG 62
Query: 147 EVYI-----RGRKRAGLISDEEISGL-----------------RIGLVFQSA--ALFDSL 182
+ + +K+ + R+G+VFQ A LF+
Sbjct: 63 TIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQ- 121
Query: 183 TVRENVGF--LLYENSKMRDEQISELVKENLAAVGL-KGVEDRLPSELSGGMKKRVALAR 239
T+ +++ F + SK E+ + + + VGL + R P ELSGG K+RVALA
Sbjct: 122 TIEKDIIFGPVSMGVSK---EEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALA- 177
Query: 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVV 299
I+ ++EP+ L++DEPTAGLDP + ++ +++K+G+ + ++V
Sbjct: 178 GIL------AMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGK----------TIILV 221
Query: 300 TH 301
TH
Sbjct: 222 TH 223
|
Length = 305 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 98.0 bits (244), Expect = 2e-23
Identities = 77/285 (27%), Positives = 131/285 (45%), Gaps = 51/285 (17%)
Query: 102 GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD 161
+L VS I GE VG++G SG GKST+ +++ GL P +G V RG+ L
Sbjct: 22 QRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81
Query: 162 EEISGLR-IGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG 218
+ + R + LVFQ + A+ +TVR+ +G L + + + + + E L VGL+
Sbjct: 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRS 141
Query: 219 -VEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIR 277
D+LP +LSGG +R+ +AR++ +V+P++++ DE + LD + V+ +L+R
Sbjct: 142 EDADKLPRQLSGGQLQRINIARAL-------AVKPKLIVLDEAVSNLDMVLQAVILELLR 194
Query: 278 SVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEV 337
+ + G A Y+ +TH R V C
Sbjct: 195 KL--QQAFGTA-------YLFITHD----LRLVQSFC----------------------- 218
Query: 338 FFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFASGSL-EGPIR 381
R+ + +G+IV + + S +P + S L E P+R
Sbjct: 219 ---QRVAVMDKGQIVEECDVAQLLSFKHPAGRNLQSAVLPEHPVR 260
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 96.9 bits (242), Expect = 2e-23
Identities = 70/239 (29%), Positives = 110/239 (46%), Gaps = 48/239 (20%)
Query: 92 IDCRNVYKSFGEKH--ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149
++ +NV + +LR +S I GE V ++GPSG+GKST++ +I D G +
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 150 IRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELV 207
I G + D ++ LR IGLV Q LF+ TV EN+ Y E++ E
Sbjct: 61 IDGHD----VRDYTLASLRRQIGLVSQDVFLFND-TVAENI---AYGRPGATREEVEEAA 112
Query: 208 KENLAAVGLKGVEDRLP-----------SELSGGMKKRVALARSIIFDNTKESVEPEVLL 256
+ A LP +LSGG ++R+A+AR+++ D P +L+
Sbjct: 113 R----AANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKD-------PPILI 161
Query: 257 YDEPTAGLDPIASTVVEDLI-RSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLC 314
DE T+ LD T E L+ ++ + +N V+ H+ STI A DR+
Sbjct: 162 LDEATSALD----TESERLVQAALERLMKNRTT--------FVIAHRLSTIENA-DRIV 207
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 97.6 bits (243), Expect = 2e-23
Identities = 78/300 (26%), Positives = 135/300 (45%), Gaps = 67/300 (22%)
Query: 91 LIDCRNVYKSFGEK---------HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL 141
L++ RN+ K+F + ++ VSF +R G+ + IIG +G+GKST+ K++AG++
Sbjct: 4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMI 63
Query: 142 APDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYE----NSK 197
P GE+ I D RI ++FQ SL R +G +L N+
Sbjct: 64 EPTSGEILINDHPLH--FGDYSFRSKRIRMIFQDPN--TSLNPRLRIGQILDFPLRLNTD 119
Query: 198 MRDEQISELVKENLAAVGLKGVEDRL-PSELSGGMKKRVALARSIIFDNTKESVEPEVLL 256
+ EQ + + E L VGL P L+ G K+RVALAR++I + P++++
Sbjct: 120 LEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALI-------LRPKIII 172
Query: 257 YDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLF 316
DE A LD + + +L+ + + + G+ SY+ VT QH
Sbjct: 173 ADEALASLDMSMRSQLINLM--LELQEKQGI-------SYIYVT-QH------------I 210
Query: 317 QIFGHI-DVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHE-FTSSSNPIVQQFASG 374
+ HI D V++ ++EG++V +G T + S + + ++
Sbjct: 211 GMIKHISDQVLV------------------MHEGEVVERGSTADVLASPLHELTKRLIES 252
|
Length = 267 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 98.0 bits (244), Expect = 3e-23
Identities = 62/183 (33%), Positives = 102/183 (55%), Gaps = 19/183 (10%)
Query: 105 HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGR----KRAGLIS 160
H L+G++ I+ GE I+G +G GKST+ + + G+L P G + G+ R GL+
Sbjct: 20 HALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMK 79
Query: 161 DEEISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG 218
E +G+VFQ LF S +V ++V F N K+ ++++ + V L G++
Sbjct: 80 LRE----SVGMVFQDPDNQLF-SASVYQDVSFGAV-NLKLPEDEVRKRVDNALKRTGIEH 133
Query: 219 VEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRS 278
++D+ LS G KKRVA+A ++ +EP+VL+ DEPTAGLDP+ + + L+
Sbjct: 134 LKDKPTHCLSFGQKKRVAIAGVLV-------MEPKVLVLDEPTAGLDPMGVSEIMKLLVE 186
Query: 279 VHK 281
+ K
Sbjct: 187 MQK 189
|
Length = 283 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 96.0 bits (240), Expect = 3e-23
Identities = 62/209 (29%), Positives = 92/209 (44%), Gaps = 40/209 (19%)
Query: 102 GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD 161
E+ + G+SF + GE V I GP+G GK+++L+I+AGL PD GEV +G
Sbjct: 12 DERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQ--R 69
Query: 162 EEISGLRIGLVFQSAALF--------DSLTVRENVGFLLYENSKMRDEQISELVKENLAA 213
+E + L+ LT EN+ F ++ E + E LA
Sbjct: 70 DE---------YHQDLLYLGHQPGIKTELTALENLRFYQ----RLHGPGDDEALWEALAQ 116
Query: 214 VGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVE 273
VGL G ED +LS G ++RVALAR + + + DEP +D +E
Sbjct: 117 VGLAGFEDVPVRQLSAGQQRRVALARLWL-------TRAPLWILDEPFTAIDKQGVARLE 169
Query: 274 DLIRSVHKKGENGLANPGNIASYVVVTHQ 302
L+ H A G + ++ THQ
Sbjct: 170 ALLAQ-H-------AEQGGMV--ILTTHQ 188
|
Length = 204 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 3e-23
Identities = 60/199 (30%), Positives = 99/199 (49%), Gaps = 25/199 (12%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
L+ R++ K + +L+G+ F + GE ++G +G GKST++KIIAG++ PD G + I
Sbjct: 11 LLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEI 70
Query: 151 RGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKE- 209
G A L + + L I LV Q LF +L+V+EN+ F L + +++ +L+
Sbjct: 71 GGNPCARL-TPAKAHQLGIYLVPQEPLLFPNLSVKENILFGL-PKRQASMQKMKQLLAAL 128
Query: 210 ----NL-AAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGL 264
+L ++ G V DR E+ G L R + +L+ DEPTA L
Sbjct: 129 GCQLDLDSSAGSLEVADRQIVEILRG------LMR-----------DSRILILDEPTASL 171
Query: 265 DPIASTVVEDLIRSVHKKG 283
P + + IR + +G
Sbjct: 172 TPAETERLFSRIRELLAQG 190
|
Length = 510 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 97.6 bits (243), Expect = 4e-23
Identities = 69/217 (31%), Positives = 106/217 (48%), Gaps = 28/217 (12%)
Query: 72 SSKSENVNTLFEPEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKS 131
S K ENV+ ++ P + EK L +SF++ G V ++G +G+GKS
Sbjct: 2 SIKFENVDYIYSPG--------------TPMEKKGLDNISFELEEGSFVALVGHTGSGKS 47
Query: 132 TILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR--IGLVFQ--SAALFDSLTVREN 187
T+++ LL P G + I G ++ + LR + LVFQ A LF++ TV ++
Sbjct: 48 TLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFEN-TVLKD 106
Query: 188 VGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSIIFDNT 246
V F +N +++ E + L VGL + + P ELSGG +RVA+A + +
Sbjct: 107 VEFGP-KNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAY--- 162
Query: 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKG 283
EPE+L DEP AGLDP + L + K G
Sbjct: 163 ----EPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAG 195
|
Length = 287 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 97.2 bits (242), Expect = 4e-23
Identities = 75/265 (28%), Positives = 126/265 (47%), Gaps = 46/265 (17%)
Query: 70 NDSSKSENVNTLFEPEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTG 129
+ N V+ D +N+ +GE H L+ ++ I E IIGPSG G
Sbjct: 3 ATVVNVQVKNEEKIETAPKKVVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCG 62
Query: 130 KSTILKIIAGL--LAPD---KGEVYIRGRKRAGLISDEEIS--GLR--IGLVFQS----- 175
KST +K + + L P G++ R + I D+ S LR +G+VFQ
Sbjct: 63 KSTYIKTLNRMVELVPSVKTTGKILYRDQN----IFDKSYSVEELRTNVGMVFQKPNPFP 118
Query: 176 AALFDSLTVRENVGFLLYENSKMRDEQISELVKENL-AAVGLKGVEDRLPSE---LSGGM 231
+++D++T + + ++ K D E+V+++L A ++DRL LSGG
Sbjct: 119 KSIYDNVTYGPKIHGI--KDKKTLD----EIVEKSLRGAAIWDELKDRLHDNAYGLSGGQ 172
Query: 232 KKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPG 291
++R+ +AR + ++EP+V+L DEPT+ LDPI++ VE+L++ + K
Sbjct: 173 QQRLCIARCL-------AIEPDVILMDEPTSALDPISTLKVEELVQELKKD--------- 216
Query: 292 NIASYVVVTHQHSTIRRAVDRLCLF 316
S ++VTH R D+ F
Sbjct: 217 --YSIIIVTHNMQQAARISDKTAFF 239
|
Length = 271 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 97.2 bits (242), Expect = 5e-23
Identities = 66/188 (35%), Positives = 105/188 (55%), Gaps = 18/188 (9%)
Query: 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD---KGEVYIRGRKRAGLI 159
+K L +SF I G +IG +G+GKSTI K+I GLL PD ++ + G +
Sbjct: 19 KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGIT----L 74
Query: 160 SDEEISGLR--IGLVFQSA-ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL 216
+ + + +R +G+VFQ+ F TV ++V F L EN + ++ ++V++ LA VG+
Sbjct: 75 TAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGL-ENRAVPRPEMIKIVRDVLADVGM 133
Query: 217 KGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLI 276
D P+ LSGG K+RVA+A I+ +VEP++++ DE T+ LDP + LI
Sbjct: 134 LDYIDSEPANLSGGQKQRVAIA-GIL------AVEPKIIILDESTSMLDPAGKEQILKLI 186
Query: 277 RSVHKKGE 284
R + KK
Sbjct: 187 RKLKKKNN 194
|
Length = 282 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 96.6 bits (240), Expect = 5e-23
Identities = 68/241 (28%), Positives = 123/241 (51%), Gaps = 36/241 (14%)
Query: 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--LAPD-- 144
+ ++ +N+ +GEK L ++ I + +IGPSG GKST L+ + + L +
Sbjct: 2 KIKMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVK 61
Query: 145 -KGEVYIRGRKRAGLISDEEISGL----RIGLVFQSAALFDSLTVRENVGFLLYENSKMR 199
+GEV + G+ I D+++ + R+G+VFQ F +++ +NV + +
Sbjct: 62 IEGEVLLDGKN----IYDKDVDVVELRKRVGMVFQKPNPF-PMSIYDNVAYGPRIHGIKD 116
Query: 200 DEQISELVKENLAAVGL-KGVEDRLPS---ELSGGMKKRVALARSIIFDNTKESVEPEVL 255
+++ ++V+ L L V+D L +LSGG ++R+ +AR+I +V+P+V+
Sbjct: 117 KKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTI-------AVKPDVI 169
Query: 256 LYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCL 315
L DEPT+ LDPI++ +EDL+ + K+ + V+VTH R D
Sbjct: 170 LMDEPTSALDPISTLKIEDLMVELKKE-----------YTIVIVTHNMQQASRVSDYTAF 218
Query: 316 F 316
F
Sbjct: 219 F 219
|
Length = 251 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 96.4 bits (240), Expect = 5e-23
Identities = 76/282 (26%), Positives = 133/282 (47%), Gaps = 60/282 (21%)
Query: 101 FGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--LAPD---KGEVYIRGRKR 155
+G K IL ++ I E IGPSG GKST L+ + P+ KGE+ I G
Sbjct: 15 YGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDV 74
Query: 156 AGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQ-ISELVKENLAAV 214
+ ++ + ++G+VFQ F ++ +NV + + ++++ + E+V+++L +V
Sbjct: 75 YSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSV 133
Query: 215 GL-KGVEDRLPS---ELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAST 270
GL + + DRL ELSGG ++R+ +AR+I +V+P +LL DEP + LDP+A+
Sbjct: 134 GLWEELGDRLKDSAFELSGGQQQRLCIARAI-------AVKPTMLLMDEPCSALDPVATN 186
Query: 271 VVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGA 330
V+E+LI+ + K + +VVTH ++ D
Sbjct: 187 VIENLIQELKKN-----------FTIIVVTHSMKQAKKVSD------------------- 216
Query: 331 VAPDKEVFFIYRLIFLYEGKIVWQGMTHE-FTSSSNPIVQQF 371
R+ F G+IV T E F + + +++
Sbjct: 217 -----------RVAFFQSGRIVEYNTTQEIFKNPQSSKTKRY 247
|
Length = 251 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 96.2 bits (239), Expect = 6e-23
Identities = 76/243 (31%), Positives = 114/243 (46%), Gaps = 34/243 (13%)
Query: 87 DGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILK-------IIAG 139
+ +++DC+ +G +R IR E G IGPSG GKST+L+ ++ G
Sbjct: 4 EAPIVMDCKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKG 63
Query: 140 LLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMR 199
+G V+ G+ G D + IG+VFQ F S+++ +NV F L N
Sbjct: 64 FRF--EGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNRYKG 120
Query: 200 DEQISELVKENLAAVGL-KGVEDRLPS---ELSGGMKKRVALARSIIFDNTKESVEPEVL 255
D + + VK L L V+D+L LSGG ++R+ +AR+I + EPEVL
Sbjct: 121 D--LGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAI-------ATEPEVL 171
Query: 256 LYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCL 315
L DEP + LDPIA+ VE+L+ + K + +VTH R D
Sbjct: 172 LLDEPCSALDPIATRRVEELMVELKKD-----------YTIALVTHNMQQAIRVADTTAF 220
Query: 316 FQI 318
F +
Sbjct: 221 FSV 223
|
Length = 261 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 96.2 bits (239), Expect = 8e-23
Identities = 65/179 (36%), Positives = 99/179 (55%), Gaps = 10/179 (5%)
Query: 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166
L ++ I+ GE +GIIG +G+GKST+ + GLL P KG+V + G + I
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRK 77
Query: 167 LRIGLVFQSAAL-FDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPS 225
L +G+VFQ+ F TV E++ F EN + +I + V LA +GL+ R P
Sbjct: 78 L-VGIVFQNPETQFVGRTVEEDLAFGP-ENLCLPPIEIRKRVDRALAEIGLEKYRHRSPK 135
Query: 226 ELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGE 284
LSGG + VALA + ++EPE L++DE T+ LDP + V + I+ +H+KG+
Sbjct: 136 TLSGGQGQCVALAGIL-------TMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGK 187
|
Length = 274 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 95.8 bits (239), Expect = 8e-23
Identities = 79/253 (31%), Positives = 110/253 (43%), Gaps = 66/253 (26%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
L+ R + K +G + R VSF + GE +GI+G SG+GK+T+L ++ LAPD GEV+
Sbjct: 6 LLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHY 65
Query: 151 RGRKR-----AGLISDEEISGLRI--GLVFQSAA--LFDSLTVRENVGFLLYENSKMRDE 201
R R L E LR G V Q L ++ N+G
Sbjct: 66 RMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIG------------ 113
Query: 202 QISELVKENLAAVG--------------LKGVE------DRLPSELSGGMKKRVALARSI 241
E L AVG L+ VE D LP+ SGGM++R+ +AR++
Sbjct: 114 -------ERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNL 166
Query: 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRS-VHKKGENGLANPGNIASYVVVT 300
+ P ++ DEPT GLD + DL+R V E GLA V+VT
Sbjct: 167 V-------THPRLVFMDEPTGGLDVSVQARLLDLLRGLVR---ELGLA-------VVIVT 209
Query: 301 HQHSTIRRAVDRL 313
H + R RL
Sbjct: 210 HDLAVARLLAHRL 222
|
Length = 258 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 95.8 bits (238), Expect = 9e-23
Identities = 70/241 (29%), Positives = 120/241 (49%), Gaps = 34/241 (14%)
Query: 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--LAPD- 144
+I +V+ +G+ L+G+ E +IGPSG GKST L+ + + L P
Sbjct: 2 AKKIITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGV 61
Query: 145 --KGEVYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRD 200
G V +RG+ +E++ LR +G+VFQ F ++ ENV + L + ++D
Sbjct: 62 TITGNVSLRGQNIYA--PNEDVVQLRKQVGMVFQQPNPF-PFSIYENVIYGL-RLAGVKD 117
Query: 201 EQI-SELVKENLAAVGL-KGVEDRLPSE---LSGGMKKRVALARSIIFDNTKESVEPEVL 255
+ + E V+ +L + V+D L LSGG ++RV +AR + +V+P+V+
Sbjct: 118 KAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVL-------AVKPDVI 170
Query: 256 LYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCL 315
L DEPT+ LDPI+ST +E+++ + + + ++VTH R D+
Sbjct: 171 LLDEPTSALDPISSTQIENMLLELRDQ-----------YTIILVTHSMHQASRISDKTAF 219
Query: 316 F 316
F
Sbjct: 220 F 220
|
Length = 252 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 94.8 bits (236), Expect = 1e-22
Identities = 69/239 (28%), Positives = 114/239 (47%), Gaps = 44/239 (18%)
Query: 86 DDGDVLIDCRNV---YKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA 142
D ++ +NV Y + + +L+ VSF + GE ++GPSG+GKST++ ++
Sbjct: 6 DHLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ 65
Query: 143 PDKGEVYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMR- 199
P G+V + G+ IS E L + LV Q LF + ++++N+ + L S
Sbjct: 66 PQGGQVLLDGKP----ISQYEHKYLHSKVSLVGQEPVLF-ARSLQDNIAYGLQSCSFECV 120
Query: 200 ---------DEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250
ISEL VG KG S+LSGG K+RVA+AR++I +
Sbjct: 121 KEAAQKAHAHSFISELASGYDTEVGEKG------SQLSGGQKQRVAIARALIRN------ 168
Query: 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA 309
P+VL+ DE T+ LD + V+ + ++ + +V+ H+ ST+ RA
Sbjct: 169 -PQVLILDEATSALDAESEQQVQQALYDWPER-----------RTVLVIAHRLSTVERA 215
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 95.3 bits (237), Expect = 1e-22
Identities = 76/239 (31%), Positives = 108/239 (45%), Gaps = 30/239 (12%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
L+ + KS+G R VSF + GE +GI+G SG+GKST+L +AG LAPD G
Sbjct: 3 LLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATY 62
Query: 151 RGRKRAGL----ISDEEISGL---RIGLVFQSAALFDSLTVR----ENVGFLLYENSKMR 199
R A L +S+ E L G V Q+ D L +R N+G L
Sbjct: 63 IMRSGAELELYQLSEAERRRLMRTEWGFVHQNPR--DGLRMRVSAGANIGERLMAIGARH 120
Query: 200 DEQISELVKENLAAVGL-KGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYD 258
I ++ L V + D LP SGGM++R+ +AR+++ P ++ D
Sbjct: 121 YGNIRATAQDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLV-------TRPRLVFMD 173
Query: 259 EPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQ 317
EPT GLD + DL+R GL +A ++VTH R RL + Q
Sbjct: 174 EPTGGLDVSVQARLLDLLR--------GLVRDLGLAV-IIVTHDLGVARLLAQRLLVMQ 223
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 95.2 bits (237), Expect = 2e-22
Identities = 68/201 (33%), Positives = 106/201 (52%), Gaps = 19/201 (9%)
Query: 85 EDDGDVLIDCRNV---YKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL 141
+D + +I +NV Y+S L+ VSF I G+ I+G +G+GKSTI K++ G+
Sbjct: 1 MEDKNSIIVFKNVSFQYQS-DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIE 59
Query: 142 APDKGEVYIRGRKRAGLISDEEISGLR--IGLVFQSAA-LFDSLTVRENVGFLLYENSKM 198
GE++ + I+D+ LR IG+VFQ+ F V+ +V F L EN +
Sbjct: 60 KVKSGEIFYNNQ----AITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGL-ENHAV 114
Query: 199 RDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYD 258
+++ V E L V + D P+ LSGG K+RVA+A + ++ P V++ D
Sbjct: 115 PYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVL-------ALNPSVIILD 167
Query: 259 EPTAGLDPIASTVVEDLIRSV 279
E T+ LDP A + DL+R V
Sbjct: 168 EATSMLDPDARQNLLDLVRKV 188
|
Length = 269 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 95.6 bits (237), Expect = 2e-22
Identities = 73/218 (33%), Positives = 117/218 (53%), Gaps = 25/218 (11%)
Query: 110 VSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR- 168
+ +++ G +IG +G+GKST+L+ + GLL P +G+V + + +EI +R
Sbjct: 25 IDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRK 84
Query: 169 -IGLVFQ--SAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL-KGVEDRLP 224
+G+VFQ + LF+ TV ++V F +N + E+ ++ E L VGL ++ P
Sbjct: 85 KVGVVFQFPESQLFEE-TVLKDVAFGP-QNFGIPKEKAEKIAAEKLEMVGLADEFWEKSP 142
Query: 225 SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGE 284
ELSGG +RVA+A + ++EPEVL+ DEPTAGLDP A + L S+H+ G+
Sbjct: 143 FELSGGQMRRVAIAGIL-------AMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQ 195
Query: 285 NGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHI 322
+ V+VTH + D + L + GHI
Sbjct: 196 ----------TVVLVTHLMDDVADYADYVYLLEK-GHI 222
|
Length = 288 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 92.8 bits (231), Expect = 2e-22
Identities = 64/227 (28%), Positives = 106/227 (46%), Gaps = 60/227 (26%)
Query: 92 IDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149
+ NV S+ E + +L+ +S +++ GE + ++G SG+GKST+L+++ G L P +GE+
Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60
Query: 150 IRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKE 209
+ G + L ++ +S L I ++ Q LFD+ T+R N+G
Sbjct: 61 LDGVPVSDL--EKALSSL-ISVLNQRPYLFDT-TLRNNLG-------------------- 96
Query: 210 NLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAS 269
SGG ++R+ALAR ++ D P VLL DEPT GLDPI
Sbjct: 97 ---------------RRFSGGERQRLALARILLQD------APIVLL-DEPTVGLDPITE 134
Query: 270 TVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLF 316
+ LI V K + + +TH + I +D++
Sbjct: 135 RQLLSLIFEVLKD-----------KTLIWITHHLTGIEH-MDKILFL 169
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 96.5 bits (241), Expect = 3e-22
Identities = 59/154 (38%), Positives = 79/154 (51%), Gaps = 32/154 (20%)
Query: 122 IIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL-------RIGLVFQ 174
I G SG GK++++ I+GL P KG + + GR ++ D E G+ RIG VFQ
Sbjct: 29 IFGRSGAGKTSLINAISGLTRPQKGRIVLNGR----VLFDAE-KGICLPPEKRRIGYVFQ 83
Query: 175 SAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVE---DRLPSELSGGM 231
A LF VR N L Y +K Q ++V L G+E DR P LSGG
Sbjct: 84 DARLFPHYKVRGN---LRYGMAKSMVAQFDKIVA-------LLGIEPLLDRYPGSLSGGE 133
Query: 232 KKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
K+RVA+ R+++ PE+LL DEP A LD
Sbjct: 134 KQRVAIGRALL-------TAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 93.6 bits (233), Expect = 3e-22
Identities = 64/210 (30%), Positives = 95/210 (45%), Gaps = 28/210 (13%)
Query: 91 LIDCRNVYKSFG-------EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP 143
L++ ++ K+F +L+ VS + GE V + GPSG GKST+LK + P
Sbjct: 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLP 60
Query: 144 DKGEVYIRGR-KRAGL--ISDEEISGLR---IGLVFQSAALFDSLTVRENVGFLLYENSK 197
D G + +R L S E+ +R IG V Q + ++ E V L E
Sbjct: 61 DSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERG- 119
Query: 198 MRDEQISELVKENLAAVGLKGVEDRL----PSELSGGMKKRVALARSIIFDNTKESVEPE 253
+ E +E LA + + +RL P+ SGG ++RV +AR I +
Sbjct: 120 VPREAARARARELLARL---NIPERLWHLPPATFSGGEQQRVNIARGFI-------ADYP 169
Query: 254 VLLYDEPTAGLDPIASTVVEDLIRSVHKKG 283
+LL DEPTA LD VV +LI +G
Sbjct: 170 ILLLDEPTASLDAANRQVVVELIAEAKARG 199
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 96.8 bits (241), Expect = 3e-22
Identities = 58/185 (31%), Positives = 85/185 (45%), Gaps = 28/185 (15%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
ID ++ FG+ +L GV +R G VG++GP+G GK+T+L+ I G L P G V +
Sbjct: 4 IDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVA 63
Query: 152 GRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKM-----------RD 200
G L + + R+ V Q +L VR+ V +M
Sbjct: 64 GDDVEALSARA--ASRRVASVPQDTSLSFEFDVRQVV--------EMGRTPHRSRFDTWT 113
Query: 201 EQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEP 260
E V+ + G+ DR + LSGG ++RV LAR++ + VLL DEP
Sbjct: 114 ETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARAL-------AQATPVLLLDEP 166
Query: 261 TAGLD 265
TA LD
Sbjct: 167 TASLD 171
|
Length = 402 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 93.4 bits (232), Expect = 4e-22
Identities = 67/190 (35%), Positives = 99/190 (52%), Gaps = 15/190 (7%)
Query: 91 LIDCRNVYKSF-GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149
+I +V K++ G + L+GV+F +R GE + G SG GKST+LK+I G+ P G+++
Sbjct: 1 MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIW 60
Query: 150 IRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELV 207
G L + E+ LR IG++FQ L TV +NV L + + I V
Sbjct: 61 FSGHDITRL-KNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLII-AGASGDDIRRRV 118
Query: 208 KENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPI 267
L VGL P +LSGG ++RV +AR+++ +P VLL DEPT LD
Sbjct: 119 SAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVV-------NKPAVLLADEPTGNLDDA 171
Query: 268 ASTVVEDLIR 277
S E ++R
Sbjct: 172 LS---EGILR 178
|
Length = 222 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.8 bits (233), Expect = 4e-22
Identities = 56/196 (28%), Positives = 102/196 (52%), Gaps = 24/196 (12%)
Query: 96 NVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKR 155
N+ K++ + ++ VS + GE VG++GP+G GK+T ++ G++ D G +
Sbjct: 8 NLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNI------- 60
Query: 156 AGLISDEEISGLR--------IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELV 207
+I DE+IS L IG + Q A++F L+V +N+ +L + EQ +
Sbjct: 61 --IIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRA 118
Query: 208 KENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPI 267
E + ++ + D + LSGG ++RV +AR++ + P+ +L DEP AG+DPI
Sbjct: 119 NELMEEFHIEHLRDSMGQSLSGGERRRVEIARAL-------AANPKFILLDEPFAGVDPI 171
Query: 268 ASTVVEDLIRSVHKKG 283
+ ++ +I + G
Sbjct: 172 SVIDIKRIIEHLRDSG 187
|
Length = 241 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 97.3 bits (243), Expect = 5e-22
Identities = 68/247 (27%), Positives = 111/247 (44%), Gaps = 36/247 (14%)
Query: 89 DVLIDCRNVYKSF----GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD 144
L+ RN+ +F G ++G+SF I GE + ++G SG+GKS I GLL
Sbjct: 4 MPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSP 63
Query: 145 -----KGEVYIRGRKRAGLISDE--EISGLRIGLVFQSAALFDSL----TVRENVGFLLY 193
G + G + + G +IG++FQ SL T+ + + +L
Sbjct: 64 AAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEP--MTSLNPLHTIGKQLAEVLR 121
Query: 194 ENSKMRDEQISELVKENLAAVGLKGVEDRL---PSELSGGMKKRVALARSIIFDNTKESV 250
+ + E L VG+ E RL P ELSGG ++RV +A ++
Sbjct: 122 LHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALA-------N 174
Query: 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAV 310
EP++L+ DEPT LD + DL++ + + E G+A + +TH +R+
Sbjct: 175 EPDLLIADEPTTALDVTVQAQILDLLKEL--QAELGMA-------ILFITHDLGIVRKFA 225
Query: 311 DRLCLFQ 317
DR+ + Q
Sbjct: 226 DRVYVMQ 232
|
Length = 534 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 94.0 bits (234), Expect = 5e-22
Identities = 77/260 (29%), Positives = 113/260 (43%), Gaps = 60/260 (23%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
L+ + K +G R VSF + GE +GI+G SG+GK+T+LK I+G L PD G V
Sbjct: 6 LLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTY 65
Query: 151 RGRKR-----AGLISDEEISGLRI--GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQI 203
R R + E LR G V Q+ D L ++ + G N
Sbjct: 66 RMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPR--DGLRMQVSAG----GN-------- 111
Query: 204 SELVKENLAAVG--------------LKGVE------DRLPSELSGGMKKRVALARSIIF 243
+ E L A+G L+ VE D LP SGGM++R+ +AR+++
Sbjct: 112 ---IGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLV- 167
Query: 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQH 303
P ++ DEPT GLD + DL+R GL +A V+VTH
Sbjct: 168 ------TRPRLVFMDEPTGGLDVSVQARLLDLLR--------GLVRELGLAV-VIVTHDL 212
Query: 304 STIRRAVDRLCLFQIFGHID 323
+ R DRL + + ++
Sbjct: 213 AVARLLADRLMVMKQGQVVE 232
|
Length = 258 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 97.4 bits (243), Expect = 5e-22
Identities = 81/263 (30%), Positives = 130/263 (49%), Gaps = 52/263 (19%)
Query: 84 PEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP 143
PE +G + ++ + G+K LRG+SF ++ GEA+ IIGPSG+GKST+ ++I G+ P
Sbjct: 311 PEPEGHLSVENVTIVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPP 370
Query: 144 DKGEVYIRGRKRAGLIS-DEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQ 202
G V + G A L D E G IG + Q LF TV EN+ ++ +
Sbjct: 371 TSGSVRLDG---ADLKQWDRETFGKHIGYLPQDVELFPG-TVAENI-------ARFGENA 419
Query: 203 ISELVKENLAAVGLKGVED---RLP-----------SELSGGMKKRVALARSIIFDNTKE 248
E + + A L GV + RLP + LSGG ++R+ALAR++ D
Sbjct: 420 DPEKI---IEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGD---- 472
Query: 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRR 308
P++++ DEP + LD + + I+++ +G + VV+TH+ S +
Sbjct: 473 ---PKLVVLDEPNSNLDEEGEQALANAIKALKARG----------ITVVVITHRPSLL-G 518
Query: 309 AVDRLCLFQ-----IFGHIDVVI 326
VD++ + Q FG D V+
Sbjct: 519 CVDKILVLQDGRIARFGERDEVL 541
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 93.9 bits (233), Expect = 6e-22
Identities = 72/236 (30%), Positives = 115/236 (48%), Gaps = 29/236 (12%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDK---GE 147
+I + K+F + L V I HGE V ++GPSG+GKST+L+ ++GL+ DK
Sbjct: 4 IIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSH 63
Query: 148 VYIRGR--KRAG-LISDEEISGLRIGLVFQSAALFDSLTVRENV-----GFLLYENSKMR 199
+ + GR +R G L D S G +FQ L + L+V ENV G + +
Sbjct: 64 IELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFS 123
Query: 200 --DEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLY 257
+ + + L VG+ + S LSGG ++RVA+AR+++ + +V+L
Sbjct: 124 WFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALM-------QQAKVILA 176
Query: 258 DEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313
DEP A LDP ++ +V D +R + N + + VV HQ R +R+
Sbjct: 177 DEPIASLDPESARIVMDTLRDI---------NQNDGITVVVTLHQVDYALRYCERI 223
|
Length = 262 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 92.8 bits (231), Expect = 6e-22
Identities = 65/191 (34%), Positives = 98/191 (51%), Gaps = 32/191 (16%)
Query: 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE 162
E L+G+SF I GE VG IGP+G GK+T LKI++GLL P GEV + AGL+ +
Sbjct: 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRV-----AGLVPWK 87
Query: 163 EISGL--RIGLVF-QSAALFDSLTVRENVGFLL--------YENSKMRDEQISELVKENL 211
RIG+VF Q L+ L V + F L K R +++SEL+
Sbjct: 88 RRKKFLRRIGVVFGQKTQLWWDLPVID--SFYLLAAIYDLPPARFKKRLDELSELLD--- 142
Query: 212 AAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTV 271
L+ + D +LS G + R +A +++ EPE+L DEPT GLD +A
Sbjct: 143 ----LEELLDTPVRQLSLGQRMRAEIAAALLH-------EPEILFLDEPTIGLDVVAQEN 191
Query: 272 VEDLIRSVHKK 282
+ + ++ +++
Sbjct: 192 IRNFLKEYNRE 202
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 96.9 bits (242), Expect = 9e-22
Identities = 67/229 (29%), Positives = 117/229 (51%), Gaps = 43/229 (18%)
Query: 92 IDCRNVYKSFG----EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE 147
++ RN+ +FG E ++ S ++ G+ V ++G SG+GKSTI K++AGL P GE
Sbjct: 478 VELRNI--TFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGE 535
Query: 148 VYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELV 207
+ G R I E ++ + +V Q LF+ TVR+N+ L++ + + D +
Sbjct: 536 ILFDGIPREE-IPREVLAN-SVAMVDQDIFLFEG-TVRDNLT--LWDPT-IPDADLVRAC 589
Query: 208 KENLAAV-----GLKGVEDRLPSE----LSGGMKKRVALARSIIFDNTKESVEPEVLLYD 258
K+ AA+ G D +E LSGG ++R+ +AR+++ P +L+ D
Sbjct: 590 KD--AAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALV-------RNPSILILD 640
Query: 259 EPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIR 307
E T+ LDP +++D +R ++G + ++V H+ STIR
Sbjct: 641 EATSALDPETEKIIDDNLR---RRG----------CTCIIVAHRLSTIR 676
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 93.2 bits (231), Expect = 1e-21
Identities = 68/188 (36%), Positives = 104/188 (55%), Gaps = 15/188 (7%)
Query: 98 YKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAG 157
Y+ + + L GVSF I GE V IIG +G+GKST ++I GL +G+V I G
Sbjct: 14 YEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGEL--- 70
Query: 158 LISDEEISGLR--IGLVFQSA-ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAV 214
++ E + LR IG+VFQ+ F TV ++V F + EN + E++ + V E L AV
Sbjct: 71 -LTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGM-ENQGIPREEMIKRVDEALLAV 128
Query: 215 GLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVED 274
+ + R P+ LSGG K+RVA+A I ++ PE+++ DE T+ LDP +
Sbjct: 129 NMLDFKTREPARLSGGQKQRVAVAGII-------ALRPEIIILDESTSMLDPTGRQEIMR 181
Query: 275 LIRSVHKK 282
+I + +K
Sbjct: 182 VIHEIKEK 189
|
Length = 277 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.5 bits (230), Expect = 2e-21
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 38/234 (16%)
Query: 96 NVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL-----LAPDKGEVYI 150
+VY +G+K ++G+ + + +IGPSG+GKST L+ + + +A G++
Sbjct: 27 HVY--YGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILY 84
Query: 151 RGRKRAGLISDEEIS--GLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISEL 206
RG I+ +EI+ +R IG+VFQ F + ++ EN+ F L + + E+
Sbjct: 85 RGID----INRKEINVYEMRKHIGMVFQRPNPF-AKSIYENITFALERAGVKDKKVLDEI 139
Query: 207 VKENLAAVGL-KGVEDRLPSE---LSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA 262
V+ +L L V+D L LSGG ++R+ +AR+I +V+P++LL DEP +
Sbjct: 140 VETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAI-------AVKPDILLMDEPAS 192
Query: 263 GLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLF 316
LDPI++ +E+ + + K + ++VTH RA D F
Sbjct: 193 ALDPISTMQLEETMFELKKN-----------YTIIIVTHNMQQAARASDYTAFF 235
|
Length = 267 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 95.0 bits (237), Expect = 3e-21
Identities = 74/262 (28%), Positives = 122/262 (46%), Gaps = 65/262 (24%)
Query: 83 EPEDDGD-----VL---IDCRNV---YKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKS 131
PE D L I+ V Y+ G IL VS +I GE V I+GPSG+GKS
Sbjct: 435 LPEVDEAKTDPGKLSGAIEVDRVTFRYRPDGPL-ILDDVSLQIEPGEFVAIVGPSGSGKS 493
Query: 132 TILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVG 189
T+L+++ G P+ G V+ G+ AGL ++ +R +G+V Q+ L S ++ EN+
Sbjct: 494 TLLRLLLGFETPESGSVFYDGQDLAGL----DVQAVRRQLGVVLQNGRLM-SGSIFENI- 547
Query: 190 FLLYENSKMRDEQISELVKENLAAVGLKGVED---RLP-------SE----LSGGMKKRV 235
++ + E A + G+ + +P SE LSGG ++R+
Sbjct: 548 --------AGGAPLT--LDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRL 597
Query: 236 ALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIAS 295
+AR+++ +P +LL+DE T+ LD +V + + L +
Sbjct: 598 LIARALV-------RKPRILLFDEATSALDNRTQAIVSESL--------ERLK-----VT 637
Query: 296 YVVVTHQHSTIRRAVDRLCLFQ 317
+V+ H+ STIR A DR+ +
Sbjct: 638 RIVIAHRLSTIRNA-DRIYVLD 658
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 90.9 bits (225), Expect = 4e-21
Identities = 69/229 (30%), Positives = 121/229 (52%), Gaps = 35/229 (15%)
Query: 101 FGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL---LAPDKGEVYIRGRKRAG 157
+G+K L ++ +I + +IG SG GKST L+ + +A G V I G+
Sbjct: 12 YGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKD--- 68
Query: 158 LISDEEISGLR--IGLVFQSAALFDSLTVRENVGFL--LYENSKMRDEQISELVKENLAA 213
+ ++++ LR +G+VFQ +F ++ EN+ + L+ K +DE+ LV + L
Sbjct: 69 -VKNQDVVALRKNVGMVFQQPNVFVK-SIYENISYAPKLHGMIKNKDEE-EALVVDCLQK 125
Query: 214 VGL-KGVEDRLPSE---LSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAS 269
VGL + V+D+L LSGG ++R+ +AR++ +++P++LL DEPT+ LDPI+S
Sbjct: 126 VGLFEEVKDKLKQNALALSGGQQQRLCIARAL-------AIKPKLLLLDEPTSALDPISS 178
Query: 270 TVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQI 318
V+E+L++ + S ++VTH +R D F +
Sbjct: 179 GVIEELLKELSHN-----------LSMIMVTHNMQQGKRVADYTAFFHL 216
|
Length = 246 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 94.4 bits (235), Expect = 4e-21
Identities = 63/238 (26%), Positives = 113/238 (47%), Gaps = 45/238 (18%)
Query: 91 LIDCRNVYKSFG--EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV 148
++ RNV + ++ L +S I GE V ++G SG+GKST++ +I PD G++
Sbjct: 330 DVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQI 389
Query: 149 YIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISEL 206
+ G ++D ++ LR + LV Q LF+ T+ N+ + ++
Sbjct: 390 LLDGHD----LADYTLASLRRQVALVSQDVVLFND-TIANNIAY------GRTEQADRAE 438
Query: 207 VKENLAAVGLKGVEDRLP-----------SELSGGMKKRVALARSIIFDNTKESVEPEVL 255
++ LAA + D+LP LSGG ++R+A+AR+++ D +L
Sbjct: 439 IERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKD-------APIL 491
Query: 256 LYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313
+ DE T+ LD + +V+ + + +G L V+ H+ STI +A DR+
Sbjct: 492 ILDEATSALDNESERLVQAALERL-MQGRTTL----------VIAHRLSTIEKA-DRI 537
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 91.2 bits (226), Expect = 5e-21
Identities = 73/239 (30%), Positives = 117/239 (48%), Gaps = 36/239 (15%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL-----LAPDK 145
+++ +++ +GEK + +S I +IGPSG GKST L+ I + A +
Sbjct: 21 ILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSE 80
Query: 146 GEVYIRGRKRAGLISDEEIS--GLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDE 201
GE+ G I D I+ LR IG+VFQ F ++ N+ L + R
Sbjct: 81 GEILYEGLN----ILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAGERRKS 135
Query: 202 QISELVKENLAAVGL-KGVEDRLPS---ELSGGMKKRVALARSIIFDNTKESVEPEVLLY 257
+ E+V+E+L L V+DRL S LSGG ++R+ +AR++ +++P VLL
Sbjct: 136 VLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTL-------AMKPAVLLL 188
Query: 258 DEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLF 316
DEP + LDPI++ +E+LI + ++ S ++VTH R DR F
Sbjct: 189 DEPASALDPISNAKIEELITELKEE-----------YSIIIVTHNMQQALRVSDRTAFF 236
|
Length = 268 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 91.0 bits (226), Expect = 5e-21
Identities = 73/262 (27%), Positives = 119/262 (45%), Gaps = 52/262 (19%)
Query: 72 SSKSENVNTLFEPEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKS 131
+S T+ E+ NVY +G ++ V I + IGPSG GKS
Sbjct: 1 TSTLNGTETVLRTEN--------LNVY--YGSFLAVKNVWLDIPKNQITAFIGPSGCGKS 50
Query: 132 TILK-------IIAGLLAPDKGEVYIRGRKRAGLISDEEISGL----RIGLVFQSAALFD 180
TIL+ +I G +G+V G+ + ++ + RIG+VFQ F
Sbjct: 51 TILRCFNRLNDLIPGFRV--EGKVTFHGKN----LYAPDVDPVEVRRRIGMVFQKPNPF- 103
Query: 181 SLTVRENVGFLLYENSKMRDEQISELVKENL-AAVGLKGVEDRLP---SELSGGMKKRVA 236
++ +N+ + N D + ELV+ +L A V+D+L LSGG ++R+
Sbjct: 104 PKSIYDNIAYGARINGYKGD--MDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLC 161
Query: 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASY 296
+AR+I +V+PEV+L DEP + LDPI++ +E+L+ H+ E +
Sbjct: 162 IARAI-------AVQPEVILMDEPCSALDPISTLRIEELM---HELKEQ--------YTI 203
Query: 297 VVVTHQHSTIRRAVDRLCLFQI 318
++VTH R D F +
Sbjct: 204 IIVTHNMQQAARVSDMTAFFNV 225
|
Length = 264 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 90.6 bits (225), Expect = 6e-21
Identities = 66/195 (33%), Positives = 95/195 (48%), Gaps = 18/195 (9%)
Query: 100 SFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLI 159
S G + I+ GV G G++GP+G+GKST+L+++AG L PD G V + G GL
Sbjct: 10 SAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLS 69
Query: 160 SDEEISGLRIGLVFQSAALFDSLTVRENVGF------LLYENSKMRDEQISELVKENLAA 213
R+ LV Q + LTVR+ V L+ D + +V LA
Sbjct: 70 RRAR--ARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHD---AAVVDRALAR 124
Query: 214 VGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVE 273
L + DR S LSGG ++RV +AR++ + EP++LL DEPT LD A
Sbjct: 125 TELSHLADRDMSTLSGGERQRVHVARAL-------AQEPKLLLLDEPTNHLDVRAQLETL 177
Query: 274 DLIRSVHKKGENGLA 288
L+R + G +A
Sbjct: 178 ALVRELAATGVTVVA 192
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 87.9 bits (219), Expect = 6e-21
Identities = 53/221 (23%), Positives = 88/221 (39%), Gaps = 85/221 (38%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
I+ N+ K++G K +L+ +S I G+ +G++G +G GKST+LK+IAG L PD+G V
Sbjct: 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV--- 57
Query: 152 GRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENL 211
S ++IG EQ+S
Sbjct: 58 ----------TWGSTVKIGYF----------------------------EQLS------- 72
Query: 212 AAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTV 271
GG K R+ALA+ ++ P +LL DEPT LD +
Sbjct: 73 -----------------GGEKMRLALAKLLL-------ENPNLLLLDEPTNHLDLESIEA 108
Query: 272 VEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDR 312
+E+ ++ PG + ++V+H + + +
Sbjct: 109 LEEALKEY----------PGTV---ILVSHDRYFLDQVATK 136
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 90.9 bits (225), Expect = 6e-21
Identities = 73/238 (30%), Positives = 116/238 (48%), Gaps = 36/238 (15%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKI---IAGLLAPDK--G 146
I +++ + + G+S I + IIGPSG GKST +K I+ L P K G
Sbjct: 8 IKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEG 67
Query: 147 EVYIRGRKRAGLISDEEISGLR----IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQ 202
V G+ I D I+ R IG+VFQ F +++ ENV + + ++K+
Sbjct: 68 VVDFFGQN----IYDPRININRLRRQIGMVFQRPNPF-PMSIYENVAYGVRISAKLPQAD 122
Query: 203 ISELVKENLAAVGL-KGVEDRLPSE---LSGGMKKRVALARSIIFDNTKESVEPEVLLYD 258
+ E+V+ L L + V+D+L LSGG ++R+ +AR++ +++P+VLL D
Sbjct: 123 LDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARAL-------AIKPKVLLMD 175
Query: 259 EPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLF 316
EP + LDPIA+ VE+LI S+ + + +VTH R D F
Sbjct: 176 EPCSALDPIATMKVEELIHSLRSE-----------LTIAIVTHNMQQATRVSDFTAFF 222
|
Length = 259 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 92.9 bits (231), Expect = 2e-20
Identities = 66/234 (28%), Positives = 112/234 (47%), Gaps = 46/234 (19%)
Query: 91 LIDCRNV---YKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE 147
LI+ ++V Y + + +L+G++F + GE V ++GPSG+GKST+ ++ L P G+
Sbjct: 478 LIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQ 537
Query: 148 VYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLL--YENSKMR---- 199
V + G + + L + LV Q LF S +VREN+ + L + ++
Sbjct: 538 VLLDGVP----LVQYDHHYLHRQVALVGQEPVLF-SGSVRENIAYGLTDTPDEEIMAAAK 592
Query: 200 ----DEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVL 255
+ I E VG KG S+LSGG K+R+A+AR+++ P VL
Sbjct: 593 AANAHDFIMEFPNGYDTEVGEKG------SQLSGGQKQRIAIARALVRK-------PRVL 639
Query: 256 LYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA 309
+ DE T+ LD E L++ + + +++ H+ ST+ RA
Sbjct: 640 ILDEATSALD----AECEQLLQESRSRASR---------TVLLIAHRLSTVERA 680
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 92.5 bits (230), Expect = 2e-20
Identities = 68/221 (30%), Positives = 114/221 (51%), Gaps = 32/221 (14%)
Query: 91 LIDCRNVYKSF--GEKHI--LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG 146
L++ +++ +S+ GE+ + L+G+S I GE V I+G SG+GKST++ I+ L P G
Sbjct: 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSG 63
Query: 147 EVYIRGRKRAGLISDEEISGLR---IGLVFQSAALFDSLTVRENVGF-LLYENS--KMRD 200
+ G+ A L +D ++ LR G +FQ L LT +NV +Y K R
Sbjct: 64 TYRVAGQDVATLDAD-ALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRL 122
Query: 201 EQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEP 260
+ EL L +GL+ + PS+LSGG ++RV++AR+++ +V+L DEP
Sbjct: 123 LRAQEL----LQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGG-------QVILADEP 171
Query: 261 TAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTH 301
T LD + V ++ + +G + ++VTH
Sbjct: 172 TGALDSHSGEEVMAILHQLRDRGH----------TVIIVTH 202
|
Length = 648 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.9 bits (221), Expect = 3e-20
Identities = 55/184 (29%), Positives = 92/184 (50%), Gaps = 26/184 (14%)
Query: 109 GVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168
V+ ++R E V +IGP+G GK+T+ + G P G + +RG+ GL +I+ R
Sbjct: 23 NVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGL-PGHQIA--R 79
Query: 169 IGLV--FQSAALFDSLTVRENV----------GFL--LYENSKMR--DEQISELVKENLA 212
+G+V FQ LF +TV EN+ G L + R + + + L
Sbjct: 80 MGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLE 139
Query: 213 AVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVV 272
VGL +R L+ G ++R+ +AR ++ +PE+L+ DEP AGL+P + +
Sbjct: 140 RVGLLEHANRQAGNLAYGQQRRLEIARCMV-------TQPEILMLDEPAAGLNPKETKEL 192
Query: 273 EDLI 276
++LI
Sbjct: 193 DELI 196
|
Length = 255 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 88.7 bits (220), Expect = 3e-20
Identities = 74/244 (30%), Positives = 116/244 (47%), Gaps = 40/244 (16%)
Query: 87 DGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--LAPD 144
+++I +NV S+G ++ V I G+ +IGPSG GKST+L+ + + L
Sbjct: 9 SKNIIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEG 68
Query: 145 ---KGEVYIRGRKRAGLISDEEISGL----RIGLVFQSAALFDSLTVRENVGFLLYENSK 197
KG V G + D + + RIG+VFQ F ++ EN+ F N
Sbjct: 69 CSLKGRVLFDGTD----LYDPRVDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARINGY 123
Query: 198 MRDEQISELVKENL--AAVGLKGVEDRLPSE---LSGGMKKRVALARSIIFDNTKESVEP 252
D + ELV+ +L AAV +D+L LSGG ++R+ +AR+I ++EP
Sbjct: 124 TGD--MDELVERSLRKAAV-WDECKDKLNESGYSLSGGQQQRLCIARTI-------AIEP 173
Query: 253 EVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDR 312
EV+L DEP + LDPI++ +E+ + + K + V+VTH R D
Sbjct: 174 EVILMDEPCSALDPISTLKIEETMHELKKN-----------FTIVIVTHNMQQAVRVSDM 222
Query: 313 LCLF 316
F
Sbjct: 223 TAFF 226
|
Length = 269 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 89.8 bits (223), Expect = 4e-20
Identities = 68/222 (30%), Positives = 117/222 (52%), Gaps = 30/222 (13%)
Query: 109 GVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168
GV+ ++ GE +G++G SG GKST + I GL+ GEV G+ G+ D+E +R
Sbjct: 39 GVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGM-KDDEWRAVR 97
Query: 169 --IGLVFQSAALFDSLTVRENVGFLLYE-----NSKMRDEQISELVKENLAAVGL-KGVE 220
I ++FQ SL R +G ++ E + K+ +++ + VK + VGL +
Sbjct: 98 SDIQMIFQDP--LASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLI 155
Query: 221 DRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD-PIASTVVEDLIRSV 279
+R P E SGG +R+ +AR++I +EP++++ DEP + LD I + VV +L++ +
Sbjct: 156 NRYPHEFSGGQCQRIGIARALI-------LEPKLIICDEPVSALDVSIQAQVV-NLLQQL 207
Query: 280 HKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGH 321
+ E GL S + + H + ++ DR+ L GH
Sbjct: 208 QR--EMGL-------SLIFIAHDLAVVKHISDRV-LVMYLGH 239
|
Length = 331 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 88.0 bits (219), Expect = 5e-20
Identities = 72/267 (26%), Positives = 113/267 (42%), Gaps = 67/267 (25%)
Query: 102 GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD----KGEVYIRGRKRAG 157
G+K IL+GV+ ++ GE I+GP+G+GKST+ I G P +GE+ G
Sbjct: 15 GKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGH--PKYEVTEGEILFDGEDILE 72
Query: 158 LISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQIS-----ELVKENLA 212
L S +E + I L FQ +T + FL + R + + +KE
Sbjct: 73 L-SPDERARAGIFLAFQYPVEIPGVTNSD---FLRAAMNARRGARGILPEFIKELKEKAE 128
Query: 213 AVGLKGVEDRLPSEL----SGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIA 268
+GL E+ L + SGG KKR + + ++ EP++ + DEP +GLD A
Sbjct: 129 LLGLD--EEFLERYVNEGFSGGEKKRNEILQLLLL-------EPKLAILDEPDSGLDIDA 179
Query: 269 STVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIIL 328
+V + I + L G +++TH +R +L
Sbjct: 180 LKIVAEGINA--------LREEGR--GVLIITHY----QR------------------LL 207
Query: 329 GAVAPDKEVFFIYRLIFLYEGKIVWQG 355
+ PDK V LY+G+IV G
Sbjct: 208 DYIKPDK-VH------VLYDGRIVKSG 227
|
Length = 251 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 88.4 bits (219), Expect = 8e-20
Identities = 72/227 (31%), Positives = 110/227 (48%), Gaps = 32/227 (14%)
Query: 101 FGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--LAPD---KGEVYIRGRKR 155
+GE ++ V+ I IIGPSG GKST L+ I + L P G + G
Sbjct: 49 YGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDI 108
Query: 156 AGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVG 215
G +DE + +IG+VFQ F ++ +N+ + + +Q+ E+V+++L
Sbjct: 109 YGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAA 167
Query: 216 L-KGVEDRLPSE---LSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTV 271
L V DRL LSGG ++R+ +AR++ +VEPE+LL DEPT+ LDP A+
Sbjct: 168 LWDEVSDRLDKNALGLSGGQQQRLCVARTL-------AVEPEILLLDEPTSALDPKATAK 220
Query: 272 VEDLIRSVHKKGENGLANPGNIASY--VVVTHQHSTIRRAVDRLCLF 316
+EDLI+ + SY ++VTH R D F
Sbjct: 221 IEDLIQELR-------------GSYTIMIVTHNMQQASRVSDYTMFF 254
|
Length = 286 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 87.1 bits (216), Expect = 1e-19
Identities = 63/225 (28%), Positives = 102/225 (45%), Gaps = 28/225 (12%)
Query: 101 FGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKII--AGLLAPD---KGEVYIRGRKR 155
+ +K L VS E +IGPSG+GKST+L+ I L P+ G + G
Sbjct: 15 YNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNI 74
Query: 156 AGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVG 215
+D IG+VFQ F +++ ENV + L + + E V+++L
Sbjct: 75 YSPRTDTVDLRKEIGMVFQQPNPF-PMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGAS 133
Query: 216 L-KGVEDRLPSE---LSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTV 271
+ V+DRL LSGG ++RV +AR + + P+++L DEPT+ LDPI++
Sbjct: 134 IWDEVKDRLHDSALGLSGGQQQRVCIARVL-------ATSPKIILLDEPTSALDPISAGK 186
Query: 272 VEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLF 316
+E+ + + + ++VT R DR F
Sbjct: 187 IEETLLGLKDD-----------YTMLLVTRSMQQASRISDRTGFF 220
|
Length = 252 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 86.6 bits (214), Expect = 2e-19
Identities = 72/239 (30%), Positives = 118/239 (49%), Gaps = 39/239 (16%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--LAPD---KG 146
I N+ +GEK L+ VS +I +IGPSG GKST ++ + + L + +G
Sbjct: 13 IKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEG 72
Query: 147 EVYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGF---LLYENSKMRDE 201
+V I G D ++ LR +G+VFQ F +++ +NV + + N K
Sbjct: 73 KVSIEGEDIYE--PDVDVVELRKNVGMVFQKPNPF-PMSIYDNVAYGPRIHGANKK---- 125
Query: 202 QISELVKENLAAVGL-KGVEDRLPS---ELSGGMKKRVALARSIIFDNTKESVEPEVLLY 257
+ +V+ L + L DRL S LSGG ++R+ +AR++ +V+P+++L+
Sbjct: 126 DLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTL-------AVKPKIILF 178
Query: 258 DEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLF 316
DEPT+ LDPI++ +EDLI ++ K + V+VTH R D F
Sbjct: 179 DEPTSALDPISTARIEDLIMNLKKD-----------YTIVIVTHNMQQAARISDYTGFF 226
|
Length = 258 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 86.6 bits (214), Expect = 2e-19
Identities = 71/236 (30%), Positives = 116/236 (49%), Gaps = 28/236 (11%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
I N+ + + IL GVS +I + IIGPSG GKST LK + + + EV +
Sbjct: 8 IKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCL-NRMNELESEVRVE 66
Query: 152 GRKRAGLISDEE----ISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISE 205
GR + E ++ LR + +V LF ++V +NV + + +I +
Sbjct: 67 GRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLF-PMSVYDNVAYGVKIVGWRPKLEIDD 125
Query: 206 LVKENLAAVGL-KGVEDRLPS---ELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPT 261
+V+ L L ++ ++ +LSGG ++R+ +AR++ +V+P+VLL DEP
Sbjct: 126 IVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARAL-------AVKPKVLLMDEPC 178
Query: 262 AGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQ 317
GLDPIAS VE LI+S+ + E + V+V+H + R D F+
Sbjct: 179 FGLDPIASMKVESLIQSLRLRSE---------LTMVIVSHNLHQVSRLSDFTAFFK 225
|
Length = 261 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 89.6 bits (222), Expect = 2e-19
Identities = 72/240 (30%), Positives = 112/240 (46%), Gaps = 45/240 (18%)
Query: 99 KSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD--KGEVYIRGRKRA 156
+ E+ IL GV+ GE + ++GPSG+GKST+L +AG + + G + RK
Sbjct: 76 RQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT 135
Query: 157 GLISDEEISGLRIGLVFQSAALFDSLTVRENVGF---LLYENSKMRDEQISELVKENLAA 213
I R G V Q L+ LTVRE + F L S + E+I + + ++
Sbjct: 136 KQILK------RTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKIL-VAESVISE 188
Query: 214 VGLKGVEDRLPSE-----LSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIA 268
+GL E+ + +SGG +KRV++A ++ + P +L+ DEPT+GLD A
Sbjct: 189 LGLTKCENTIIGNSFIRGISGGERKRVSIAHEML-------INPSLLILDEPTSGLDATA 241
Query: 269 STVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIIL 328
+ R V G LA G +VT H R ++Q+F D V++L
Sbjct: 242 A------YRLVLTLG--SLAQKGK----TIVTSMHQPSSR------VYQMF---DSVLVL 280
|
Length = 659 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 84.8 bits (211), Expect = 3e-19
Identities = 53/214 (24%), Positives = 92/214 (42%), Gaps = 49/214 (22%)
Query: 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165
L+ ++ ++ GE V I+GP G+GKS++L + G L G V + G
Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG------------- 66
Query: 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQIS--ELVK--ENLAA-----VGL 216
I V Q + + T+REN+ F + + ++ I L E L +G
Sbjct: 67 --SIAYVSQEPWIQ-NGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGE 123
Query: 217 KGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDP-IASTVVEDL 275
KG+ LSGG K+R++LAR++ D ++ L D+P + +D + + E+
Sbjct: 124 KGI------NLSGGQKQRISLARAVYSD-------ADIYLLDDPLSAVDAHVGRHIFENC 170
Query: 276 IRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA 309
I + + ++VTHQ + A
Sbjct: 171 ILGLLLNN----------KTRILVTHQLQLLPHA 194
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 3e-19
Identities = 62/218 (28%), Positives = 97/218 (44%), Gaps = 30/218 (13%)
Query: 109 GVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD----KGEVYIRGRKRAGLISDEEI 164
++ ++ GE + ++G SG+GKS I GLL P GE+ + GR L I
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL----SI 59
Query: 165 SGLRIGLVFQS--AALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDR 222
G I + Q+ A T+ + L K+ Q L+ E L AVGL E+
Sbjct: 60 RGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSK-QARALILEALEAVGLPDPEEV 118
Query: 223 L---PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSV 279
L P +LSGGM +RV +A +++ EP L+ DEPT LD + V L+R +
Sbjct: 119 LKKYPFQLSGGMLQRVMIALALLL-------EPPFLIADEPTTDLDVVNQARVLKLLREL 171
Query: 280 HKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQ 317
+ G+ +++TH + R D + +
Sbjct: 172 RQLFGTGI---------LLITHDLGVVARIADEVAVMD 200
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 89.0 bits (221), Expect = 4e-19
Identities = 61/222 (27%), Positives = 109/222 (49%), Gaps = 46/222 (20%)
Query: 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165
+L ++ I+ GE +GI+GPSG+GKST+ K++ L P G+V + G A I+D
Sbjct: 472 VLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLA--IADPAWL 529
Query: 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVED---R 222
++G+V Q LF S ++R+N+ N E + + A L G D
Sbjct: 530 RRQMGVVLQENVLF-SRSIRDNIAL---CNPGAPFEHV-------IHAAKLAGAHDFISE 578
Query: 223 LP-----------SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTV 271
LP + LSGG ++R+A+AR+++ + P +L++DE T+ LD + +
Sbjct: 579 LPQGYNTEVGEKGANLSGGQRQRIAIARALVGN-------PRILIFDEATSALDYESEAL 631
Query: 272 VEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313
+ +R + + + +++ H+ ST+R DR+
Sbjct: 632 IMRNMREICRG-----------RTVIIIAHRLSTVRAC-DRI 661
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 4e-19
Identities = 57/167 (34%), Positives = 91/167 (54%), Gaps = 19/167 (11%)
Query: 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166
L GVSF + G+ + ++G SG GKST+ +++ + P GE+Y +G+ E
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLK-ADPEAQKL 89
Query: 167 LR--IGLVFQSAALFDSLTVRENVGFLLYE----NSKMRDEQISELVKENLAAVGLKGVE 220
LR I +VFQ+ + SL R+ VG +L E N+ + + E +A VGL+ E
Sbjct: 90 LRQKIQIVFQNP--YGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLR-PE 146
Query: 221 --DRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
DR P SGG ++R+A+AR+++ D P+V++ DEP + LD
Sbjct: 147 HYDRYPHMFSGGQRQRIAIARALMLD-------PDVVVADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 88.3 bits (219), Expect = 4e-19
Identities = 62/234 (26%), Positives = 114/234 (48%), Gaps = 36/234 (15%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
I + KSFG H L+ V+ + GE ++G +G GKST++K+++G+ P KG + I
Sbjct: 5 YISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITI 64
Query: 151 RGRKRAGLISDEEISG-LRIGLVFQSAALFDSLTVRENV-----------GFLLYENSKM 198
L D +++ L IG+++Q ++ D LTV EN+ G + + +M
Sbjct: 65 NNINYNKL--DHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREM 122
Query: 199 RDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYD 258
R + + ++ VGLK D + LS K+ + +A++++ D +V++ D
Sbjct: 123 R-VRAAMMLLR----VGLKVDLDEKVANLSISHKQMLEIAKTLMLD-------AKVIIMD 170
Query: 259 EPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDR 312
EPT+ L + ++ + K+G + V ++H+ + IRR DR
Sbjct: 171 EPTSSLTNKEVDYLFLIMNQLRKEG----------TAIVYISHKLAEIRRICDR 214
|
Length = 510 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 85.6 bits (212), Expect = 5e-19
Identities = 68/232 (29%), Positives = 115/232 (49%), Gaps = 41/232 (17%)
Query: 89 DVLIDCRNVYKS-------FGEKHI--LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAG 139
+ L++ RN+ K+ F + + ++ +SF +R G+ + IIG +G+GKST+ K++AG
Sbjct: 2 ETLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAG 61
Query: 140 LLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVG----FLLYEN 195
++ P GE+ I D RI ++FQ + SL R+ + F L N
Sbjct: 62 MIEPTSGELLIDDHPLH--FGDYSYRSQRIRMIFQDPS--TSLNPRQRISQILDFPLRLN 117
Query: 196 SKMRDEQISELVKENLAAVGLKGVEDRL---PSELSGGMKKRVALARSIIFDNTKESVEP 252
+ + EQ + + E L VGL + D P L+ G K+R+ LAR++I + P
Sbjct: 118 TDLEPEQREKQIIETLRQVGL--LPDHASYYPHMLAPGQKQRLGLARALI-------LRP 168
Query: 253 EVLLYDEPTAGLD-PIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQH 303
+V++ DE A LD + S ++ ++ K+G SY+ VT QH
Sbjct: 169 KVIIADEALASLDMSMRSQLINLMLELQEKQG----------ISYIYVT-QH 209
|
Length = 267 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.4 bits (214), Expect = 5e-19
Identities = 63/237 (26%), Positives = 105/237 (44%), Gaps = 41/237 (17%)
Query: 88 GDVLIDCRNVYKSFGEKH-----ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA 142
D+++ +N+Y F EK L +S+ + IIG SG+GKST++ GL+
Sbjct: 18 DDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK 77
Query: 143 PDKGEVYIRGRKRAGLISDEEISGL--------------RIGLVFQ--SAALFDSLTVRE 186
G + + ++ E+ R+ +VFQ LF T+ +
Sbjct: 78 SKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKD-TIEK 136
Query: 187 NVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSIIFDN 245
++ F ++ + +L K L +GL +R P LSGG K+RVA+A I+
Sbjct: 137 DIMFGPV-ALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIA-GIL--- 191
Query: 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQ 302
+++PE+L++DEPTAGLDP + LI + + V+TH
Sbjct: 192 ---AIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNK----------TVFVITHT 235
|
Length = 320 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 88.0 bits (219), Expect = 6e-19
Identities = 68/217 (31%), Positives = 105/217 (48%), Gaps = 47/217 (21%)
Query: 65 PATKFNDSSKSENVNTLFEPEDDGDVLIDCRNVYKSFG----EKHILRGVSFKIRHGEAV 120
P F +S + V + NV SF + +L+G+S +I+ GE V
Sbjct: 322 PEVTFPTTSTAAADQ----------VSLTLNNV--SFTYPDQPQPVLKGLSLQIKAGEKV 369
Query: 121 GIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR--IGLVFQSAAL 178
++G +G GKST+L+++ P +GE+ + G+ I+D + LR I +V Q L
Sbjct: 370 ALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQP----IADYSEAALRQAISVVSQRVHL 425
Query: 179 FDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL-KGVEDRLP---------SELS 228
F S T+R+N LL DE + E+ L VGL K +ED +LS
Sbjct: 426 F-SATLRDN---LLLAAPNASDEALIEV----LQQVGLEKLLEDDKGLNAWLGEGGRQLS 477
Query: 229 GGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
GG ++R+ +AR+++ D +LL DEPT GLD
Sbjct: 478 GGEQRRLGIARALLHD-------APLLLLDEPTEGLD 507
|
Length = 574 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 84.8 bits (210), Expect = 7e-19
Identities = 67/232 (28%), Positives = 109/232 (46%), Gaps = 37/232 (15%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
L+ NV SFG++ +L VS +++ G+ + ++GP+G GKST+++++ GL+APD+G +
Sbjct: 4 LVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI-- 61
Query: 151 RGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKEN 210
+ LRIG V Q L +L + V L + E I +K
Sbjct: 62 -----------KRNGKLRIGYVPQKLYLDTTLPL--TVNRFLRLRPGTKKEDILPALKRV 108
Query: 211 LAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAST 270
A + D +LSGG +RV LAR+++ P++L+ DEPT G+D
Sbjct: 109 QAGHLI----DAPMQKLSGGETQRVLLARALL-------NRPQLLVLDEPTQGVDVNGQV 157
Query: 271 VVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHI 322
+ DLI + L + A +V H + + + LCL HI
Sbjct: 158 ALYDLI--------DQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH---HI 198
|
Length = 251 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 84.7 bits (209), Expect = 7e-19
Identities = 66/234 (28%), Positives = 116/234 (49%), Gaps = 34/234 (14%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD------ 144
+I ++V+ S+G L G+S E +IGPSG GKST L+ + + D
Sbjct: 4 IISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCL-NRMNDDIENIKI 62
Query: 145 KGEVYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLL----YENSKM 198
GE+ G+ G S ++ LR +G+VFQ F +V +NV + L ++ ++
Sbjct: 63 TGEIKFEGQNIYG--SKMDLVELRKEVGMVFQQPTPF-PFSVYDNVAYGLKIAGVKDKEL 119
Query: 199 RDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYD 258
D+++ E +K+ K DR SGG ++R+ +AR++ +V P+V+L D
Sbjct: 120 IDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARAL-------AVRPKVVLLD 172
Query: 259 EPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDR 312
EPT+ LDPI+S+ +E+ + + + ++++VTH R D+
Sbjct: 173 EPTSALDPISSSEIEETLMELKHQ-----------YTFIMVTHNLQQAGRISDQ 215
|
Length = 251 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 82.6 bits (204), Expect = 2e-18
Identities = 65/209 (31%), Positives = 95/209 (45%), Gaps = 23/209 (11%)
Query: 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154
RN FG F + GEA+ + G +G GK+T+L+++AGLL + G++ I G+
Sbjct: 21 RNEEPVFGPLD------FHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKT 74
Query: 155 RAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAV 214
++ L L L+ EN+ FL + + ++ LA V
Sbjct: 75 ATRGDRSRFMAYLG-----HLPGLKADLSTLENLHFL----CGLHGRRAKQMPGSALAIV 125
Query: 215 GLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVED 274
GL G ED L +LS G KKR+ALAR + S P LL DEP A LD T+V
Sbjct: 126 GLAGYEDTLVRQLSAGQKKRLALARLWL------SPAPLWLL-DEPYANLDLEGITLVNR 178
Query: 275 LIRS-VHKKGENGLANPGNIASYVVVTHQ 302
+I + + G + G A+ V T
Sbjct: 179 MISAHLRGGGAALVTTHGAYAAPPVRTRM 207
|
Length = 214 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 2e-18
Identities = 59/200 (29%), Positives = 96/200 (48%), Gaps = 22/200 (11%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
+ N+ +G K IL +S + G+ +IGP+G GKST+LK A LL P G V++
Sbjct: 3 LRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLG 62
Query: 152 GRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGF------LLYENSKMRDEQISE 205
+ + L S +++ R+ L+ Q + +TVRE V + L+ D
Sbjct: 63 DKPISML-SSRQLAR-RLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNA--- 117
Query: 206 LVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
V + + + + DR ++LSGG ++R LA + D V+L DEPT LD
Sbjct: 118 RVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDT-------PVVLLDEPTTYLD 170
Query: 266 PIASTVVE--DLIRSVHKKG 283
+ VE L+R ++ +G
Sbjct: 171 --INHQVELMRLMRELNTQG 188
|
Length = 255 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 82.2 bits (204), Expect = 2e-18
Identities = 59/209 (28%), Positives = 91/209 (43%), Gaps = 52/209 (24%)
Query: 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA--PDKGEVYIRG 152
++++ S G K IL+GV+ I+ GE ++GP+G+GKST+ K I G +GE+ +G
Sbjct: 4 KDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKG 63
Query: 153 RKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLA 212
L EE + L I L FQ + + FL Y N
Sbjct: 64 EDITDL-PPEERARLGIFLAFQYPPEIPGVKNAD---FLRYVN----------------- 102
Query: 213 AVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVV 272
G SGG KKR + + ++ EP++ + DEP +GLD A +V
Sbjct: 103 -EG-----------FSGGEKKRNEILQLLLL-------EPDLAILDEPDSGLDIDALRLV 143
Query: 273 EDLIRSVHKKGENGLANPGNIASYVVVTH 301
++I N L G S +++TH
Sbjct: 144 AEVI--------NKLREEGK--SVLIITH 162
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 83.5 bits (206), Expect = 3e-18
Identities = 72/251 (28%), Positives = 114/251 (45%), Gaps = 39/251 (15%)
Query: 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--LAPD---KGEVY 149
+ +G L+ ++ + + +IGPSG GKST L+ + L P +GE+
Sbjct: 20 NKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEII 79
Query: 150 IRGRKRAGLISDE----EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISE 205
+ ++S E E+ +RI +VFQ F ++ ENV + L R + E
Sbjct: 80 LH-PDNVNILSPEVDPIEVR-MRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEE 136
Query: 206 LVKENLAAVGLKG-VEDRLPS---ELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPT 261
V+ L L V+DRL LSGG ++R+ +AR++ D PE+LL+DEPT
Sbjct: 137 RVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATD-------PEILLFDEPT 189
Query: 262 AGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQI--- 318
+ LDPIA+ +E+LI + K + ++VTH R D +
Sbjct: 190 SALDPIATASIEELISDLKNK-----------VTILIVTHNMQQAARVSDYTAYMYMGEL 238
Query: 319 --FGHIDVVII 327
FG D + I
Sbjct: 239 IEFGATDTIFI 249
|
Length = 265 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 84.8 bits (210), Expect = 8e-18
Identities = 58/197 (29%), Positives = 104/197 (52%), Gaps = 35/197 (17%)
Query: 102 GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL----LAPDKGEVYIRGRKRAG 157
+++ +SF +R GE +G++G SG+GKST GL L +GE++ G+
Sbjct: 297 DHNVVVKNISFTLRPGETLGLVGESGSGKST-----TGLALLRLINSQGEIWFDGQPLHN 351
Query: 158 LISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYE---------NSKMRDEQISEL 206
L + ++ +R I +VFQ SL R NV ++ E ++ R++Q+ +
Sbjct: 352 L-NRRQLLPVRHRIQVVFQDP--NSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAV 408
Query: 207 VKENLAAVGLKGV-EDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
++E VGL R P+E SGG ++R+A+AR++I ++P +++ DEPT+ LD
Sbjct: 409 MEE----VGLDPETRHRYPAEFSGGQRQRIAIARALI-------LKPSLIILDEPTSSLD 457
Query: 266 PIASTVVEDLIRSVHKK 282
+ L++S+ +K
Sbjct: 458 KTVQAQILALLKSLQQK 474
|
Length = 529 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 84.4 bits (210), Expect = 9e-18
Identities = 73/234 (31%), Positives = 110/234 (47%), Gaps = 52/234 (22%)
Query: 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE 147
GD +I+ N+ KSFG++ ++ +SF + G VGIIGP+G GKST+ K+I G PD G
Sbjct: 321 GDKVIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGT 380
Query: 148 VYIRGRKRAGLISDEEISG--LRIGLVFQS-AALFDSLTVRENV--GFLLYENSKMRDEQ 202
+ I G +++ V QS AL + TV E + G + K+ + +
Sbjct: 381 IKI---------------GETVKLAYVDQSRDALDPNKTVWEEISGG---LDIIKVGNRE 422
Query: 203 ISELVKENLAAVGLKGVEDRLP-SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPT 261
I + + KG + + LSGG + R+ LA+++ VLL DEPT
Sbjct: 423 IPS--RAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLK-------QGGNVLLLDEPT 473
Query: 262 AGLDPIASTVVEDLIRSVHKKGENGLAN-PGNIASYVVVTHQHSTIRRAVDRLC 314
LD VE L R++ E L PG VV++H R +DR+
Sbjct: 474 NDLD------VETL-RAL----EEALLEFPG---CAVVISHD----RWFLDRIA 509
|
Length = 556 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 9e-18
Identities = 73/252 (28%), Positives = 115/252 (45%), Gaps = 50/252 (19%)
Query: 70 NDSSKSENVNTLFEP--EDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSG 127
+ K ++ P GD +I+ N+ K FG+K ++ +SFK+ G VG+IGP+G
Sbjct: 299 QEFQKRNETAEIYIPPGPRLGDKVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNG 358
Query: 128 TGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQS-AALFDSLTVRE 186
GKST+ ++I G PD G + I G +++ V QS AL + TV E
Sbjct: 359 AGKSTLFRMITGQEQPDSGTIKI-G------------ETVKLAYVDQSRDALDPNKTVWE 405
Query: 187 NV--GFLLYENSKMRDEQISELVKENLAAVGLKGVE-DRLPSELSGGMKKRVALARSIIF 243
+ G + ++ ++ + + KG + + +LSGG + RV LA+++
Sbjct: 406 EISGG---LDIIQLGKREVPS--RAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTL-- 458
Query: 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLAN-PGNIASYVVVTHQ 302
K VLL DEPT LD VE L R++ E L G VV++H
Sbjct: 459 ---KSG--GNVLLLDEPTNDLD------VETL-RAL----EEALLEFAG---CAVVISHD 499
Query: 303 HSTIRRAVDRLC 314
R +DR+
Sbjct: 500 ----RWFLDRIA 507
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 82.9 bits (205), Expect = 2e-17
Identities = 69/255 (27%), Positives = 110/255 (43%), Gaps = 51/255 (20%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--LAPDKGEV- 148
I+ +N+ K F K +L+ +SF I GE +GI+G SG GKS ++ ++ G+ P G +
Sbjct: 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRII 60
Query: 149 ----------YIRGRKRAGL------------------ISDEEISGL--RIGLVFQSA-A 177
Y+ + G +SD+ + RI ++ Q A
Sbjct: 61 YHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFA 120
Query: 178 LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVAL 237
L+ TV +NV L E E + V + + V L + +LSGG K+RV L
Sbjct: 121 LYGDDTVLDNVLEALEEIGYEGKEAVGRAV-DLIEMVQLSHRITHIARDLSGGEKQRVVL 179
Query: 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYV 297
AR + + EP + L DEPT LDP + +V + + K +G+ S V
Sbjct: 180 ARQL-------AKEPFLFLADEPTGTLDPQTAKLVHNALEEAVK--ASGI-------SMV 223
Query: 298 VVTHQHSTIRRAVDR 312
+ +H I D+
Sbjct: 224 LTSHWPEVIEDLSDK 238
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 81.2 bits (200), Expect = 2e-17
Identities = 73/260 (28%), Positives = 126/260 (48%), Gaps = 45/260 (17%)
Query: 72 SSKSENVNTLFEPEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKS 131
SS+S++ + P+ + + V +G L V KI + + IGPSG GKS
Sbjct: 4 SSRSQSDSATINPDHS---VFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKS 60
Query: 132 TILK-------IIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR----IGLVFQSAALFD 180
T+L+ +I G A +G + R R I D +I+ ++ +G+VFQ F
Sbjct: 61 TLLRCFNRMNDLIPG--AKVEGRLLYRDRN----IYDSQINSVKLRRQVGMVFQRPNPFP 114
Query: 181 SLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL-KGVEDRLPSE---LSGGMKKRVA 236
++ EN+ F N + + ELV+++L + + V+D+L + LSGG ++R+
Sbjct: 115 K-SIYENIAFAPRANGYKGN--LDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLC 171
Query: 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASY 296
+AR+I +++P+VLL DEP + LDPI++ VE+L + ++ +
Sbjct: 172 IARAI-------AMKPDVLLMDEPCSALDPISTRQVEELCLELKEQ-----------YTI 213
Query: 297 VVVTHQHSTIRRAVDRLCLF 316
++VTH R D F
Sbjct: 214 IMVTHNMQQASRVADWTAFF 233
|
Length = 274 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 79.0 bits (196), Expect = 2e-17
Identities = 52/180 (28%), Positives = 75/180 (41%), Gaps = 44/180 (24%)
Query: 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166
+R VSF++R GE VGI G G G++ + + + GL P GE+ + G+ + I
Sbjct: 16 VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIR- 74
Query: 167 LRIGLV---FQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL 223
I V + L L+V EN+ L
Sbjct: 75 AGIAYVPEDRKREGLVLDLSVAENIA---------------------------------L 101
Query: 224 PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKG 283
S LSGG +++V LAR + D P VL+ DEPT G+D A + LIR + G
Sbjct: 102 SSLLSGGNQQKVVLARWLARD-------PRVLILDEPTRGVDVGAKAEIYRLIRELADAG 154
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 79.5 bits (196), Expect = 3e-17
Identities = 61/212 (28%), Positives = 94/212 (44%), Gaps = 33/212 (15%)
Query: 112 FKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171
GE +G++GP+G GK+T+L+ I GL+ P KG V + G IG
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGK-------GWRHIGY 53
Query: 172 VFQSAAL-FD-SLTVRENV-----GFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP 224
V Q +D ++V V G + + + + V++ L VGL + DR
Sbjct: 54 VPQRHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAA--VRDALRRVGLTELADRPV 111
Query: 225 SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGE 284
ELSGG ++RV +AR++ + P VLL DEP GLD ++ +L
Sbjct: 112 GELSGGQRQRVLVARAL-------ATRPSVLLLDEPFTGLDMPTQELLTELFIE------ 158
Query: 285 NGLANPGNIASYVVVTHQHSTIRRAVDRLCLF 316
LA G + ++ TH + DR+ L
Sbjct: 159 --LAGAGT--AILMTTHDLAQAMATCDRVVLL 186
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 5e-17
Identities = 73/244 (29%), Positives = 108/244 (44%), Gaps = 46/244 (18%)
Query: 91 LIDCRNVYKSFGEKH-------ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP 143
++ NV K+F +LR VS + GE V + GPSG+GKST+L+ + P
Sbjct: 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLP 63
Query: 144 DKGEVYIRGRKRAGLISD------EEISGLR---IGLVFQSAALFDSLTVRENVGFLLYE 194
D+G++ +R G D E+ +R IG V Q + ++ + V L
Sbjct: 64 DEGQILVR---HEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLA 120
Query: 195 NSKMRDEQISELVKENLAAVGLKGVEDRL----PSELSGGMKKRVALARSIIFDNTKESV 250
R+ + L + L +RL P+ SGG ++RV +AR I V
Sbjct: 121 RGVPREVA-RAKAADLLTRLNLP---ERLWSLAPATFSGGEQQRVNIARGFI-------V 169
Query: 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAV 310
+ +LL DEPTA LD VV +LIR +G A+ V + H +R AV
Sbjct: 170 DYPILLLDEPTASLDATNRAVVVELIREAKARG----------AALVGIFHDEE-VREAV 218
Query: 311 -DRL 313
DRL
Sbjct: 219 ADRL 222
|
Length = 235 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 6e-17
Identities = 67/258 (25%), Positives = 120/258 (46%), Gaps = 49/258 (18%)
Query: 83 EPEDDGDV-----LIDCRNVYKSF-GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKI 136
+P D+ ++ +V S+ + + VSF+ + G+ V I+GP+G GKST++ +
Sbjct: 321 DPPGAIDLGRVKGAVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINL 380
Query: 137 IAGLLAPDKGEVYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVREN--VGFLL 192
+ + P G + I G I + LR I +VFQ A LF+ ++ +N VG
Sbjct: 381 LQRVFDPQSGRILIDGTD----IRTVTRASLRRNIAVVFQDAGLFNR-SIEDNIRVGRPD 435
Query: 193 YENSKMRD----EQISELVKENL----AAVGLKGVEDRLPSELSGGMKKRVALARSIIFD 244
+ +MR Q + ++ VG +G +LSGG ++R+A+AR+++ D
Sbjct: 436 ATDEEMRAAAERAQAHDFIERKPDGYDTVVGERG------RQLSGGERQRLAIARALLKD 489
Query: 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS 304
P +L+ DE T+ LD V+ + + K ++ ++ H+ S
Sbjct: 490 -------PPILILDEATSALDVETEAKVKAALDELMK----------GRTTF-IIAHRLS 531
Query: 305 TIRRAVDRLCLFQIFGHI 322
T+R A DR+ L G +
Sbjct: 532 TVRNA-DRI-LVFDNGRV 547
|
Length = 588 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 79.8 bits (197), Expect = 6e-17
Identities = 60/216 (27%), Positives = 109/216 (50%), Gaps = 27/216 (12%)
Query: 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE 162
E + V+ + G+ I+G +G+GKST+++ I LL P G V + D+
Sbjct: 19 EHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDK 78
Query: 163 EISGLR--IGLVFQ--SAALFDSLTVRENVGFLLY--ENSKMRDEQISELVKENLAAVGL 216
I +R IG+VFQ + LF+ RE +++ +N KM +++ L +G
Sbjct: 79 YIRPVRKRIGMVFQFPESQLFEDTVERE----IIFGPKNFKMNLDEVKNYAHRLLMDLGF 134
Query: 217 -KGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDL 275
+ V + P ++SGG +++A+ SI+ ++ P++++ DEPTAGLDP + V L
Sbjct: 135 SRDVMSQSPFQMSGGQMRKIAIV-SIL------AMNPDIIVLDEPTAGLDPQSKRQVMRL 187
Query: 276 IRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVD 311
++S+ EN + ++V+H + + R D
Sbjct: 188 LKSLQTD-EN--------KTIILVSHDMNEVARYAD 214
|
Length = 286 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 81.8 bits (202), Expect = 7e-17
Identities = 63/240 (26%), Positives = 117/240 (48%), Gaps = 28/240 (11%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD--KGEV 148
L++ + + K+FG L G+ ++R GE VG+ G +G GKST++KI++G+ GE+
Sbjct: 1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEI 60
Query: 149 YIRGRK-RAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYE----NSKMRDEQI 203
Y G +A I D E +G I ++ Q L L+V EN+ FL E +M +
Sbjct: 61 YWSGSPLKASNIRDTERAG--IVIIHQELTLVPELSVAENI-FLGNEITLPGGRMAYNAM 117
Query: 204 SELVKENLAAVGLKGVEDRLP-SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA 262
K L + L P + GG ++ V +A+++ + + +L+ DEP++
Sbjct: 118 YLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKAL-------NKQARLLILDEPSS 170
Query: 263 GLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHI 322
L + ++ D+IR + G +A V ++H+ + ++ D +C+ + H+
Sbjct: 171 SLTEKETEILLDIIRDLKAHG---------VAC-VYISHKLNEVKAVCDTICVIRDGQHV 220
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 8e-17
Identities = 70/229 (30%), Positives = 107/229 (46%), Gaps = 47/229 (20%)
Query: 102 GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD 161
+ IL G+SF I G+ V I+G SG GKSTIL+++ + G + I G+ I D
Sbjct: 274 PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQD----IRD 329
Query: 162 EEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDE---------QISELVK-- 208
LR IG+V Q LF+ T+ N+ Y E QI + ++
Sbjct: 330 VTQQSLRRAIGIVPQDTVLFND-TIAYNIK---YGRPDATAEEVGAAAEAAQIHDFIQSL 385
Query: 209 -ENLAA-VGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDP 266
E VG +G+ +LSGG K+RVA+AR+I+ P +L+ DE T+ LD
Sbjct: 386 PEGYDTGVGERGL------KLSGGEKQRVAIARTIL-------KNPPILILDEATSALD- 431
Query: 267 IASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCL 315
T E I++ ++ G + +V+ H+ STI A + + L
Sbjct: 432 ---THTEQAIQAALREVSAG-------RTTLVIAHRLSTIIDADEIIVL 470
|
Length = 497 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.6 bits (193), Expect = 1e-16
Identities = 68/232 (29%), Positives = 111/232 (47%), Gaps = 33/232 (14%)
Query: 96 NVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDK-------GEV 148
N+ F K +L VS ++GP+G+GK+T L+ + + DK G+V
Sbjct: 26 NLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRM--NDKVSGYRYSGDV 83
Query: 149 YIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVK 208
+ GR E R+G++FQ F +++ +NV + + + ++ + +
Sbjct: 84 LLGGRSIFNYRDVLEFR-RRVGMLFQRPNPF-PMSIMDNVLAGVRAHKLVPRKEFRGVAQ 141
Query: 209 ENLAAVGL-KGVEDRL---PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGL 264
L VGL V+DRL P LSGG ++ + LAR++ +V PEVLL DEPT+ L
Sbjct: 142 ARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTL-------AVNPEVLLLDEPTSAL 194
Query: 265 DPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLF 316
DP + +E+ IRS+ + + ++VTH + R DR LF
Sbjct: 195 DPTTTEKIEEFIRSLADR-----------LTVIIVTHNLAQAARISDRAALF 235
|
Length = 276 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 1e-16
Identities = 63/227 (27%), Positives = 101/227 (44%), Gaps = 48/227 (21%)
Query: 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD----KGEVYI 150
++++ S +K IL+GV+ ++ GE I+GP+G+GKST+ K IAG P G +
Sbjct: 4 KDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAG--HPSYEVTSGTILF 61
Query: 151 RG----------RKRAGLI----SDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENS 196
+G R RAGL EEI G+ +SA R G
Sbjct: 62 KGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSAL----NARRSARG-----EE 112
Query: 197 KMRDEQISELVKENLAAVGLKG--VEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEV 254
+ +L+K LA +G+ + + SGG KKR + + + +EP++
Sbjct: 113 PLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMAL-------LEPKL 165
Query: 255 LLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTH 301
+ DE +GLD A +V + I N L P S++++TH
Sbjct: 166 AILDEIDSGLDIDALKIVAEGI--------NRLREPDR--SFLIITH 202
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 2e-16
Identities = 56/204 (27%), Positives = 89/204 (43%), Gaps = 56/204 (27%)
Query: 102 GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD 161
+K IL+ +S G +G++G +G GKST+L+I+AG+ GE
Sbjct: 16 PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP--------- 66
Query: 162 EEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDE--QISEL------------- 206
G+++G + Q L + TVRENV + E D +IS
Sbjct: 67 ----GIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLA 122
Query: 207 ----VKENLAAVGLKGVED---------RLP------SELSGGMKKRVALARSIIFDNTK 247
++E + A ++ R P ++LSGG ++RVAL R ++
Sbjct: 123 EQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLL----- 177
Query: 248 ESVEPEVLLYDEPTAGLDPIASTV 271
+P++LL DEPT LD A +V
Sbjct: 178 --SKPDMLLLDEPTNHLD--AESV 197
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 80.7 bits (199), Expect = 2e-16
Identities = 68/299 (22%), Positives = 123/299 (41%), Gaps = 78/299 (26%)
Query: 83 EPEDDGDV-----LIDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKI 136
EP D ++ ++ R++ F + VSF+ + G+ V I+GP+G GK+T++ +
Sbjct: 321 EPADAPELPNVKGAVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINL 380
Query: 137 IAGLLAPDKGEVYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYE 194
+ + P G++ I G I+ LR I VFQ A LF+ ++REN+
Sbjct: 381 LQRVYDPTVGQILIDGID----INTVTRESLRKSIATVFQDAGLFNR-SIRENIRL---- 431
Query: 195 NSKMRDEQISELVKENLAAVGLKGVEDRLP----------SELSGGMKKRVALARSIIFD 244
E+ + AA + R + LSGG ++R+A+AR+I+ +
Sbjct: 432 --GREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKN 489
Query: 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS 304
+L+ DE T+ LD V++ I ++ K + ++ H+ S
Sbjct: 490 -------APILVLDEATSALDVETEARVKNAIDALRKN-----------RTTFIIAHRLS 531
Query: 305 TIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSS 363
T+R A D+V +FL +G+++ +G E
Sbjct: 532 TVRNA-------------DLV------------------LFLDQGRLIEKGSFQELIQK 559
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 79.8 bits (197), Expect = 3e-16
Identities = 61/229 (26%), Positives = 106/229 (46%), Gaps = 38/229 (16%)
Query: 67 TKFNDSSKSENVNTLFEPEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPS 126
++F + K +N L +GD++I+ + +G IL +S I+ I+G S
Sbjct: 456 SEFINKKKRTELNNL-----NGDIVINDVSYSYGYGSN-ILSDISLTIKMNSKTTIVGMS 509
Query: 127 GTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTV 184
G+GKST+ K++ G GE+ + G + D + LR I + Q +F ++
Sbjct: 510 GSGKSTLAKLLVGFFQARSGEILLNGF----SLKDIDRHTLRQFINYLPQEPYIFSG-SI 564
Query: 185 RENVGFLLYENSKMRDEQISELVK--------ENLAAVGLKGVEDRLPSE---LSGGMKK 233
EN+ LL + ++I + EN+ G + L E +SGG K+
Sbjct: 565 LENL--LLGAKENVSQDEIWAACEIAEIKDDIENMP----LGYQTELSEEGSSISGGQKQ 618
Query: 234 RVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAS-TVVEDLIRSVHK 281
R+ALAR+++ + +VL+ DE T+ LD I +V +L+ K
Sbjct: 619 RIALARALL-------TDSKVLILDESTSNLDTITEKKIVNNLLNLQDK 660
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.6 bits (188), Expect = 6e-16
Identities = 65/241 (26%), Positives = 122/241 (50%), Gaps = 36/241 (14%)
Query: 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILK-------IIAGLL 141
+ +I+ N+ + + L ++ KI +IGPSG GKST L+ ++ G+
Sbjct: 5 EAIIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIK 64
Query: 142 APDKGEVYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMR 199
+G V G+ ++ +I LR IG+VFQ+ F +++ +N+ + +
Sbjct: 65 I--EGNVIYEGKNIYS--NNFDILELRRKIGMVFQTPNPF-LMSIYDNISYGPKIHGTKD 119
Query: 200 DEQISELVKENLAAVGL-KGVEDRLPS---ELSGGMKKRVALARSIIFDNTKESVEPEVL 255
+++ E+V+++L L V+D+L + LSGG ++R+ +AR++ ++EP V+
Sbjct: 120 KKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTL-------AIEPNVI 172
Query: 256 LYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCL 315
L DEPT+ LDPI++ +E+LI ++ + + ++VTH R DR
Sbjct: 173 LMDEPTSALDPISTGKIEELIINLKES-----------YTIIIVTHNMQQAGRISDRTAF 221
Query: 316 F 316
F
Sbjct: 222 F 222
|
Length = 254 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.0 bits (189), Expect = 8e-16
Identities = 78/276 (28%), Positives = 132/276 (47%), Gaps = 38/276 (13%)
Query: 88 GDVLIDCRNVYKSFGEK-----HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA 142
D+++D NV ++ +K L S + + +IG +G+GKST++++ GL+
Sbjct: 5 KDIILD--NVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII 62
Query: 143 PDKGEVYIRGRK-RAGLISDEEISGLR--IGLVFQ--SAALFDSLTVRENVGF---LLYE 194
+ G+ + A L +E+ LR IGLVFQ LF T+ +++ F L E
Sbjct: 63 SETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQE-TIEKDIAFGPVNLGE 121
Query: 195 NSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEV 254
N + +++ EL+K L + V+ R P ELSGG K+RVALA I D
Sbjct: 122 NKQEAYKKVPELLK--LVQLPEDYVK-RSPFELSGGQKRRVALAGIIAMDG-------NT 171
Query: 255 LLYDEPTAGLDPIASTVVEDLIRSVHKKGE-------NGLANPGNIASYVVVTHQHSTIR 307
L+ DEPT GLDP +L ++K+ + + + IA V+V H+
Sbjct: 172 LVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEG---- 227
Query: 308 RAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRL 343
+ + F+IF + +++ + + P K +Y+L
Sbjct: 228 KVISIGSPFEIFSNQELLTKI-EIDPPKLYQLMYKL 262
|
Length = 289 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 9e-16
Identities = 52/180 (28%), Positives = 84/180 (46%), Gaps = 32/180 (17%)
Query: 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166
L G++ +R GE V ++GPSG GKST+ +++ P G + + G L D
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQL--DPAELR 413
Query: 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAA------------- 213
R+ LV Q LF + +V EN+ Y DE++ + A
Sbjct: 414 ARMALVPQDPVLF-AASVMENIR---YGRPDATDEEVEAAARAAHAHEFISALPEGYDTY 469
Query: 214 VGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVE 273
+G +GV LSGG ++R+A+AR+I+ + +LL DE T+ LD + +V+
Sbjct: 470 LGERGV------TLSGGQRQRIAIARAIL-------KDAPILLLDEATSALDAESEQLVQ 516
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 77.5 bits (192), Expect = 2e-15
Identities = 67/243 (27%), Positives = 99/243 (40%), Gaps = 70/243 (28%)
Query: 95 RNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGR 153
V K +K IL+ +S G +G++G +G GKST+L+I+AG+ +GE
Sbjct: 10 NRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPA-- 67
Query: 154 KRAGLISDEEISGLRIGLVFQSAALFDSLTVRENV--GFL-----------LYENSKMRD 200
G+++G + Q L TVRENV G +Y D
Sbjct: 68 -----------PGIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPD 116
Query: 201 EQISELVKEN------LAAVGLKGVED---------RLP------SELSGGMKKRVALAR 239
L E + A ++ R P ++LSGG ++RVAL R
Sbjct: 117 ADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCR 176
Query: 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLAN-PGNIASYVV 298
++ +P++LL DEPT LD A + V L E L + PG + V
Sbjct: 177 LLL-------EKPDMLLLDEPTNHLD--AES-VAWL--------EQFLHDYPGTV---VA 215
Query: 299 VTH 301
VTH
Sbjct: 216 VTH 218
|
Length = 556 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.8 bits (186), Expect = 2e-15
Identities = 55/189 (29%), Positives = 97/189 (51%), Gaps = 19/189 (10%)
Query: 101 FGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGR----KRA 156
+ ++ +L+G++ G++G +G GKST+ ++GLL P KG V +G+ +
Sbjct: 11 YQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKR 70
Query: 157 GLISDEEISGLRIGLVFQ--SAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAV 214
GL++ + ++ VFQ +F + + ++ F L N + + +I+ V E L V
Sbjct: 71 GLLALRQ----QVATVFQDPEQQIFYT-DIDSDIAFSL-RNLGVPEAEITRRVDEALTLV 124
Query: 215 GLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVED 274
+ + LS G KKRVA+A +++ ++ LL DEPTAGLDP T +
Sbjct: 125 DAQHFRHQPIQCLSHGQKKRVAIAGALV-------LQARYLLLDEPTAGLDPAGRTQMIA 177
Query: 275 LIRSVHKKG 283
+IR + +G
Sbjct: 178 IIRRIVAQG 186
|
Length = 271 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 2e-15
Identities = 70/235 (29%), Positives = 109/235 (46%), Gaps = 52/235 (22%)
Query: 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD--KG 146
+++ +N++ S E IL+G++ I GE I+GP+G+GKST+ K+IAG A +G
Sbjct: 5 KPILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEG 64
Query: 147 EVYIRGRKRAGLISD---EEISGLRIGLVFQSAALFDSLTVRENVGFL-LYENSKMRDEQ 202
++ +G I D EE + L I L FQ ++ N FL L NSK + +
Sbjct: 65 DILFKGES----ILDLEPEERAHLGIFLAFQYPIEIPGVS---NADFLRLAYNSKRKFQG 117
Query: 203 ISEL--------VKENLAAVGLKGVEDRLPSEL--------SGGMKKRVALARSIIFDNT 246
+ EL + E L VG+ PS L SGG KKR + + + D
Sbjct: 118 LPELDPLEFLEIINEKLKLVGMD------PSFLSRNVNEGFSGGEKKRNEILQMALLD-- 169
Query: 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTH 301
E+ + DE +GLD D ++ + +G N L N S +++TH
Sbjct: 170 -----SELAILDETDSGLDI-------DALKII-AEGINKLMTSEN--SIILITH 209
|
Length = 252 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 74.5 bits (184), Expect = 2e-15
Identities = 54/190 (28%), Positives = 90/190 (47%), Gaps = 33/190 (17%)
Query: 102 GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD 161
+L+ +SF I+ GE VGI+G +G+GKS++L + L+ G + I G IS
Sbjct: 15 NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGV----DISK 70
Query: 162 EEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGV 219
+ LR I ++ Q LF T+R N+ + DE++ + L VGLK
Sbjct: 71 IGLHDLRSRISIIPQDPVLFSG-TIRSNLDPF----GEYSDEEL----WQALERVGLKEF 121
Query: 220 EDRLP-----------SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIA 268
+ LP LS G ++ + LAR+++ + ++L+ DE TA +DP
Sbjct: 122 VESLPGGLDTVVEEGGENLSVGQRQLLCLARALL-------RKSKILVLDEATASVDPET 174
Query: 269 STVVEDLIRS 278
+++ IR
Sbjct: 175 DALIQKTIRE 184
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 2e-15
Identities = 70/240 (29%), Positives = 115/240 (47%), Gaps = 37/240 (15%)
Query: 110 VSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG-----RKRAGLISDEEI 164
+SF+I GE VG +G +G GKST LK++ GLL P G+V + G R+ L S +
Sbjct: 43 ISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLV 102
Query: 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP 224
G ++ L + AL DSL V + L+YE + D++ +E + + L+G
Sbjct: 103 MGQKLQLWWDLPAL-DSLEVLK----LIYE---IPDDEFAERLDFLTEILDLEGFLKWPV 154
Query: 225 SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGE 284
+LS G + R LA +++ P+VL DEPT GLD A + + ++ +++ +
Sbjct: 155 RKLSLGQRMRAELAAALLHP-------PKVLFLDEPTVGLDVNAQANIREFLKEYNEERQ 207
Query: 285 NGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDV--VIILGAVAPDKEVFFIYR 342
A+ ++ TH I DR+ ID ++ G +A +E F Y+
Sbjct: 208 ---------ATVLLTTHIFDDIATLCDRVL------LIDQGQLVFDGTLAQLQEQFGPYK 252
|
Length = 325 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 3e-15
Identities = 62/201 (30%), Positives = 105/201 (52%), Gaps = 20/201 (9%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD---KGE 147
L++ +N+ K+FG L VS K+R GE V + G +G GKST++K+++G+ P +GE
Sbjct: 5 LLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY-PHGTYEGE 63
Query: 148 VYIRGRK-RAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYE---NSKMRDEQI 203
+ G + +A I D E +G I ++ Q AL L+V EN+ FL E M + +
Sbjct: 64 IIFEGEELQASNIRDTERAG--IAIIHQELALVKELSVLENI-FLGNEITPGGIMDYDAM 120
Query: 204 SELVKENLAAVGLKGVEDRLP-SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA 262
++ LA + L + P L G ++ V +A+++ + + +L+ DEPTA
Sbjct: 121 YLRAQKLLAQLKL-DINPATPVGNLGLGQQQLVEIAKAL-------NKQARLLILDEPTA 172
Query: 263 GLDPIASTVVEDLIRSVHKKG 283
L + V+ D+IR + G
Sbjct: 173 SLTESETAVLLDIIRDLKAHG 193
|
Length = 506 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.6 bits (180), Expect = 6e-15
Identities = 63/235 (26%), Positives = 110/235 (46%), Gaps = 40/235 (17%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
I R V + + +L+ ++ + IIGPSG GKST+L+ A ++ +
Sbjct: 5 IKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLR------ALNRMNDIVS 58
Query: 152 GRKRAG--LISDEEISG---------LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRD 200
G + G L+ +E I R+G+VFQ F ++ +NV F
Sbjct: 59 GARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQ 117
Query: 201 EQISELVKENLAAVGL-KGVEDRLPSE---LSGGMKKRVALARSIIFDNTKESVEPEVLL 256
++ E+V+++L L V+D L LSGG ++R+ +AR + ++EPEV+L
Sbjct: 118 SRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVL-------AIEPEVIL 170
Query: 257 YDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVD 311
DEP + LDP+++ +E+L++ + + + +VTH RA D
Sbjct: 171 MDEPCSALDPVSTMRIEELMQELKQN-----------YTIAIVTHNMQQAARASD 214
|
Length = 251 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.7 bits (178), Expect = 1e-14
Identities = 52/169 (30%), Positives = 84/169 (49%), Gaps = 14/169 (8%)
Query: 101 FGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS 160
+G+ + ++ +I G IIGP+G GKST+L+ ++ L+ P G V++ G S
Sbjct: 17 YGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYAS 76
Query: 161 DEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKM----RDEQISELVKENLAAVGL 216
E RIGL+ Q+A +TV+E V Y + + R E E V + + A G+
Sbjct: 77 KE--VARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKED-EEAVTKAMQATGI 133
Query: 217 KGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
+ D+ LSGG ++R +A + + E ++L DEPT LD
Sbjct: 134 THLADQSVDTLSGGQRQRAWIAMVL-------AQETAIMLLDEPTTWLD 175
|
Length = 265 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 3e-14
Identities = 57/179 (31%), Positives = 91/179 (50%), Gaps = 27/179 (15%)
Query: 110 VSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169
+S ++R GE + ++GP+G GKST+L +AGLL P G + G+ S E++ R
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEAW-SAAELARHRA 72
Query: 170 GLVFQSAALFDSLTVRENVGFL-LYENSKMRDEQISELVKENLAAVGLKGVEDRLP---S 225
L Q F ++ V + +L L++ K R E ++ + E A+GL +D+L +
Sbjct: 73 YLSQQQTPPF-AMPVFQ---YLTLHQPDKTRTEAVASALNEVAEALGL---DDKLGRSVN 125
Query: 226 ELSGGMKKRVALARSIIFDNTKESVEPEV------LLYDEPTAGLDPIASTVVED-LIR 277
+LSGG +RV LA ++ V P++ LL DEP LD +A D L+
Sbjct: 126 QLSGGEWQRVRLAAVVL------QVWPDINPAGQLLLLDEPMNSLD-VAQQAALDRLLS 177
|
Length = 248 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 4e-14
Identities = 45/180 (25%), Positives = 80/180 (44%), Gaps = 26/180 (14%)
Query: 99 KSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGL 158
++ +R VSF +R GE +GI G G G++ + + + G GE+ + G+
Sbjct: 267 RNLSGGGKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIR 326
Query: 159 ISDEEISGLRIGLV---FQSAALFDSLTVRENV---------GFLLYENSKMRDEQISEL 206
+ I I V +S L +++ EN+ L + K R L
Sbjct: 327 SPRDAIK-AGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKER-----AL 380
Query: 207 VKENLAAVGLKGV-EDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
+ + + +K ++ LSGG +++V LAR + + +P+VL+ DEPT G+D
Sbjct: 381 AERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWL-------ATDPKVLILDEPTRGID 433
|
Length = 500 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 4e-14
Identities = 58/187 (31%), Positives = 94/187 (50%), Gaps = 38/187 (20%)
Query: 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165
+L +SF I G+ VG++G +G+GKST+L LL + G++ I G +S +
Sbjct: 19 VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-GDIQIDG------VSWNSVP 71
Query: 166 GLR----IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVED 221
+ G++ Q +F S T R+N L K DE+I ++ +E VGLK V +
Sbjct: 72 LQKWRKAFGVIPQKVFIF-SGTFRKN----LDPYGKWSDEEIWKVAEE----VGLKSVIE 122
Query: 222 RLPSE-----------LSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAST 270
+ P + LS G K+ + LARS++ + ++LL DEP+A LDPI
Sbjct: 123 QFPGQLDFVLVDGGCVLSHGHKQLMCLARSVL-------SKAKILLLDEPSAHLDPITYQ 175
Query: 271 VVEDLIR 277
V+ ++
Sbjct: 176 VIRKTLK 182
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 73.5 bits (180), Expect = 6e-14
Identities = 53/173 (30%), Positives = 92/173 (53%), Gaps = 17/173 (9%)
Query: 114 IRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVF 173
+R GE G++G +G GK+T K++ G G+ + G+ ISD + +G
Sbjct: 1962 VRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQN---MGYCP 2018
Query: 174 QSAALFDSLTVRENVGFLLYENSKMR---DEQISELVKENLAAVGLKGVEDRLPSELSGG 230
Q A+ D LT RE+ LY +++R E+I ++ ++ ++GL DRL SGG
Sbjct: 2019 QFDAIDDLLTGREH----LYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGG 2074
Query: 231 MKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKG 283
K++++ A ++I P ++L DEPT G+DP A ++ + I S+ ++G
Sbjct: 2075 NKRKLSTAIALIGC-------PPLVLLDEPTTGMDPQARRMLWNTIVSIIREG 2120
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 72.7 bits (178), Expect = 9e-14
Identities = 62/212 (29%), Positives = 105/212 (49%), Gaps = 19/212 (8%)
Query: 71 DSSKSENVN-TLFEPEDDGDVLIDC-RNVYKSF---GEKHILRGVSFKIRHGEAVGIIGP 125
D E +N + FE E G V C +N+ K F G + R ++ + +G
Sbjct: 906 DPEHPEGINDSFFERELPGLVPGVCVKNLVKIFEPSGRPAVDR-LNITFYENQITAFLGH 964
Query: 126 SGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVR 185
+G GK+T L I+ GLL P G V + G+ + ++ + +G+ Q LF LTV
Sbjct: 965 NGAGKTTTLSILTGLLPPTSGTVLVGGKD---IETNLDAVRQSLGMCPQHNILFHHLTVA 1021
Query: 186 ENVGFLLYENSKMRDEQISELVKEN-LAAVGLKGVEDRLPSELSGGMKKRVALARSIIFD 244
E++ L Y K R + ++L E L GL + +LSGGM++++++A + + D
Sbjct: 1022 EHI--LFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGD 1079
Query: 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLI 276
+V++ DEPT+G+DP + + DL+
Sbjct: 1080 A-------KVVVLDEPTSGVDPYSRRSIWDLL 1104
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 1e-13
Identities = 45/170 (26%), Positives = 80/170 (47%), Gaps = 19/170 (11%)
Query: 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166
++ VSF++R GE VGI G +G G+S +++ I+GL P G + + G+ G +S E
Sbjct: 274 VKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRR 333
Query: 167 LRIGLV----FQSAALFDSLTVRENVGFLLYENSKM------RDEQISELVKENLAAVGL 216
L + V + D L++ EN+ ++ I + +E + +
Sbjct: 334 LGLAYVPEDRHGHGLVLD-LSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDV 392
Query: 217 KGVEDRLP-SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
+ P LSGG ++++ LAR + P++L+ +PT GLD
Sbjct: 393 RAPSPDAPARSLSGGNQQKLILARELARR-------PDLLIAAQPTRGLD 435
|
Length = 501 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.9 bits (174), Expect = 1e-13
Identities = 81/308 (26%), Positives = 131/308 (42%), Gaps = 90/308 (29%)
Query: 110 VSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL------APDKGEVYIRGRKRAGLISDEE 163
+S+ ++ GE VGI+G SG+GKS I GL+ +K E + +R IS++E
Sbjct: 26 ISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQR---ISEKE 82
Query: 164 ---ISGLRIGLVFQSAALFDSLTVRENVGFLLYE--------NSKMRDEQISELVKENLA 212
+ G + ++FQ SL VGF + E N K R ++ +L L
Sbjct: 83 RRNLVGAEVAMIFQDP--MTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDL----LN 136
Query: 213 AVGLKGVEDRL---PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAS 269
VG+ RL P +LSGGM +RV +A +I + P++L+ DEPT LD
Sbjct: 137 QVGIPDPASRLDVYPHQLSGGMSQRVMIAMAI-------ACRPKLLIADEPTTALDVTIQ 189
Query: 270 TVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329
+ +L+ + +K L V++TH D+ ++
Sbjct: 190 AQIIELLLELQQKENMAL---------VLITH---------------------DLALVAE 219
Query: 330 AVAPDKEVFFIYRLIFLYEGKIVWQGMTHE-FTSSSNPIVQ-------QFASG-----SL 376
A +++I +Y G++V G H+ F + +P Q +FA SL
Sbjct: 220 AA---------HKIIVMYAGQVVETGKAHDIFRAPRHPYTQALLRALPEFAQDKARLASL 270
Query: 377 EG--PIRY 382
G P +Y
Sbjct: 271 PGVVPGKY 278
|
Length = 326 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 71.4 bits (176), Expect = 2e-13
Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 25/165 (15%)
Query: 110 VSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR- 168
++F + G+ + ++GPSG GK+++L + G L P +G + I G + + + + R
Sbjct: 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIE----LRELDPESWRK 423
Query: 169 -IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSE- 226
+ V Q+ L T+R+NV L N DEQ+ + ++ + L + L +
Sbjct: 424 HLSWVGQNPQLPHG-TLRDNV---LLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPI 479
Query: 227 ------LSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
LS G +R+ALAR+++ ++LL DEPTA LD
Sbjct: 480 GDQAAGLSVGQAQRLALARALLQP-------CQLLLLDEPTASLD 517
|
Length = 588 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 2e-13
Identities = 61/199 (30%), Positives = 92/199 (46%), Gaps = 27/199 (13%)
Query: 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166
LR SF + G ++G +G+GKST+ K + G + G++ I G+ + + +
Sbjct: 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQP-----TRQALQK 77
Query: 167 LRIGLVFQSAALFDSLTVR-ENV---------GFLLYENSKMRDEQISELVKENLAAVGL 216
+ V QS + S V E+V G+L +K RD QI V LA V +
Sbjct: 78 NLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWL--RRAKKRDRQI---VTAALARVDM 132
Query: 217 KGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLI 276
R ELSGG KKRV LAR+I +V+L DEP G+D + L+
Sbjct: 133 VEFRHRQIGELSGGQKKRVFLARAIAQQG-------QVILLDEPFTGVDVKTEARIISLL 185
Query: 277 RSVHKKGENGLANPGNIAS 295
R + +G+ L + N+ S
Sbjct: 186 RELRDEGKTMLVSTHNLGS 204
|
Length = 272 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 2e-13
Identities = 51/175 (29%), Positives = 85/175 (48%), Gaps = 29/175 (16%)
Query: 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165
+L+ VSFK++ GE +GI+G +G GKST++ + L ++G++ I G IS +
Sbjct: 23 VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGID----ISTIPLE 78
Query: 166 GLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL 223
LR + ++ Q LF T+R N L + DE+I ++ V G
Sbjct: 79 DLRSSLTIIPQDPTLFSG-TIRSN----LDPFDEYSDEEIYGALR-----VSEGG----- 123
Query: 224 PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRS 278
LS G ++ + LAR+++ P VL+ DE TA +D +++ IR
Sbjct: 124 -LNLSQGQRQLLCLARALL-------KRPRVLVLDEATASIDYATDALIQKTIRE 170
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.3 bits (172), Expect = 4e-13
Identities = 68/239 (28%), Positives = 109/239 (45%), Gaps = 39/239 (16%)
Query: 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV-----YIRGRKRA----G 157
+R +SF ++ GE + I+G SG+GKS + LL G V +R R R
Sbjct: 32 VRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91
Query: 158 LISDEEISGLR---IGLVFQS--AALFDSLTVRENVG--FLLYENSKMRDEQISELVKEN 210
S ++ +R + ++FQ +L TV E + L++ + R+E + E K
Sbjct: 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGAS-REEAMVE-AKRM 149
Query: 211 LAAVGL---KGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPI 267
L V + + + R P +LSGGM++RV +A ++ S P VL+ DEPT LD
Sbjct: 150 LDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMAL-------SCRPAVLIADEPTTALDVT 202
Query: 268 ASTVVEDLIRSVHKKGENG-------LANPGNIASYVVVTHQHSTIRRAVDRLCLFQIF 319
+ LI+ + K+ G + IA V+V +Q AV+ + QIF
Sbjct: 203 IQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQG----EAVETGSVEQIF 257
|
Length = 623 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.9 bits (171), Expect = 6e-13
Identities = 51/170 (30%), Positives = 85/170 (50%), Gaps = 17/170 (10%)
Query: 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE 162
E H + VSF + GE + ++G SG+GKST + + L+ GE+ G+ R +S
Sbjct: 336 EVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQ-RIDTLSPG 394
Query: 163 EISGLR--IGLVFQSAALFDSLTVRENVGFLLYE----NSKMRDEQISELVKENLAAVGL 216
++ LR I +FQ + SL R+ VG + E + + + + V L VGL
Sbjct: 395 KLQALRRDIQFIFQDP--YASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGL 452
Query: 217 KGVED-RLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
R P E SGG ++R+ +AR++ ++ P+V++ DE + LD
Sbjct: 453 LPEHAWRYPHEFSGGQRQRICIARAL-------ALNPKVIIADEAVSALD 495
|
Length = 623 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 1e-12
Identities = 52/202 (25%), Positives = 85/202 (42%), Gaps = 67/202 (33%)
Query: 83 EPEDDGDVLIDCRNVYKSFGEKHILRGVSFK-------IRHGEAVGIIGPSGTGKSTILK 135
E + + L++ ++ K G+ F I GE +GI+GP+G GK+T K
Sbjct: 332 RDESERETLVEYPDLTKKLGD--------FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAK 383
Query: 136 IIAGLLAPDKGEV-----------YIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTV 184
++AG+L PD+GEV YI+ D + TV
Sbjct: 384 LLAGVLKPDEGEVDPELKISYKPQYIK--------PDYDG------------------TV 417
Query: 185 RENVGFLLYENSKMRDEQI-SELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIF 243
+ L + SE++K + L+ + D+ +LSGG +RVA+A +
Sbjct: 418 ED---LLRSITDDLGSSYYKSEIIK----PLQLERLLDKNVKDLSGGELQRVAIAACL-- 468
Query: 244 DNTKESVEPEVLLYDEPTAGLD 265
S + ++ L DEP+A LD
Sbjct: 469 -----SRDADLYLLDEPSAHLD 485
|
Length = 590 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 1e-12
Identities = 62/247 (25%), Positives = 102/247 (41%), Gaps = 50/247 (20%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
LI + SF + +L I E V ++G +G GKST++KI+ G + D G +
Sbjct: 3 LISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIY 62
Query: 151 RG------------RKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGF-----LLY 193
R G + D ++ G+ Q+ L + V L
Sbjct: 63 EQDLIVARLQQDPPRNVEGTVYDF-VAE---GIEEQAEYLKRYHDISHLVETDPSEKNLN 118
Query: 194 ENSKMRDE-------QISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT 246
E +K++++ Q+ + E LA +GL D S LSGG ++ AL R+++
Sbjct: 119 ELAKLQEQLDHHNLWQLENRINEVLAQLGLDP--DAALSSLSGGWLRKAALGRALV---- 172
Query: 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTI 306
P+VLL DEPT LD +E +++ +G S + ++H S I
Sbjct: 173 ---SNPDVLLLDEPTNHLDIETIEWLEGFLKTF--QG-----------SIIFISHDRSFI 216
Query: 307 RRAVDRL 313
R R+
Sbjct: 217 RNMATRI 223
|
Length = 635 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 69.2 bits (169), Expect = 1e-12
Identities = 56/186 (30%), Positives = 96/186 (51%), Gaps = 38/186 (20%)
Query: 102 GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD 161
+ +L+ +SF + G+ VG++G +G+GKST+L + LL+ + GE+ I G +S
Sbjct: 1230 AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTE-GEIQIDG------VSW 1282
Query: 162 EEISGLR----IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK 217
++ G++ Q +F S T R+N L + DE+I ++ +E VGLK
Sbjct: 1283 NSVTLQTWRKAFGVIPQKVFIF-SGTFRKN----LDPYEQWSDEEIWKVAEE----VGLK 1333
Query: 218 GVEDRLPSE-----------LSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDP 266
V ++ P + LS G K+ + LARSI+ + ++LL DEP+A LDP
Sbjct: 1334 SVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSIL-------SKAKILLLDEPSAHLDP 1386
Query: 267 IASTVV 272
+ ++
Sbjct: 1387 VTLQII 1392
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 1e-12
Identities = 50/180 (27%), Positives = 81/180 (45%), Gaps = 26/180 (14%)
Query: 92 IDCRNVYKSFGEKHILRG-VSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
++ RNV ++ + G ++ I+ GE V +IG +G+GKST+ ++ GL P GE+ +
Sbjct: 323 LELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILL 382
Query: 151 RGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVK 208
G+ +S E++ R VF LFD L E Q+ E
Sbjct: 383 DGK----PVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKA----------SPQLIEKWL 428
Query: 209 ENLAAVGLKGVEDR--LPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDP 266
+ L + D +LS G KKR+AL +++ E ++L+ DE A DP
Sbjct: 429 QRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALL-------EERDILVLDEWAADQDP 481
|
Length = 546 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 2e-12
Identities = 65/246 (26%), Positives = 105/246 (42%), Gaps = 43/246 (17%)
Query: 68 KFNDSSKSENVNTLFEPEDDGD-VLIDCRNVYKSFG------EKHILRGVSFKIRHGEAV 120
K K +NV F E D + + +++ +SFG E+++LR ++ +I+ G+ V
Sbjct: 353 KLEGPIKFKNVTKTFASELDIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVV 412
Query: 121 GIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFD 180
++G SG GK+T+L++I G +GE R + +S L G F
Sbjct: 413 AVVGQSGAGKTTLLRMILG-AQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPE---FG 468
Query: 181 SLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVED-----RLPSELSGGMKKRV 235
+T+ E++ SK D + + + G+ D R SELS G K+R
Sbjct: 469 EVTILEHLR------SKTGD------LNAAVEILNRAGLSDAVLYRRKFSELSTGQKERA 516
Query: 236 ALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIAS 295
LA+ + + P VLL DE A LD + + V R + + LA I
Sbjct: 517 KLAKLL-------AERPNVLLIDEFAAHLDELTAVRV---ARKISE-----LAREAGITL 561
Query: 296 YVVVTH 301
VV
Sbjct: 562 IVVTHR 567
|
Length = 593 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 3e-12
Identities = 51/192 (26%), Positives = 94/192 (48%), Gaps = 26/192 (13%)
Query: 84 PEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP 143
PE G++ ++ R + L V+F ++ G+ +GI GP+G+GKST+L +I
Sbjct: 308 PEGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDV 367
Query: 144 DKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQI 203
+G++ L D S R+ +V Q+ LF S TV N+ + ++ E +
Sbjct: 368 SEGDIRFHDIPLTKLQLDSWRS--RLAVVSQTPFLF-SDTVANNIALGRPDATQQEIEHV 424
Query: 204 SEL--VKENL--------AAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPE 253
+ L V +++ VG +GV LSGG K+R+++AR+++ + E
Sbjct: 425 ARLASVHDDILRLPQGYDTEVGERGV------MLSGGQKQRISIARALLLN-------AE 471
Query: 254 VLLYDEPTAGLD 265
+L+ D+ + +D
Sbjct: 472 ILILDDALSAVD 483
|
Length = 569 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 4e-12
Identities = 51/201 (25%), Positives = 92/201 (45%), Gaps = 24/201 (11%)
Query: 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149
V++ V +G+ L VS I GE V +IG +G GK+T+L + G G +
Sbjct: 4 VMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIV 63
Query: 150 IRGRKRAGLISDEEISGL---RIGLVFQSAALFDSLTVRENVG----FLLYENSKMRDEQ 202
G+ I+D + + + + +V + +F +TV EN+ F + + R +
Sbjct: 64 FDGKD----ITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKW 119
Query: 203 ISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA 262
+ EL L + +SGG ++ +A+ R+++ +P +LL DEP+
Sbjct: 120 VYELFPR------LHERRIQRAGTMSGGEQQMLAIGRALM-------SQPRLLLLDEPSL 166
Query: 263 GLDPIASTVVEDLIRSVHKKG 283
GL PI + D I + ++G
Sbjct: 167 GLAPIIIQQIFDTIEQLREQG 187
|
Length = 237 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 4e-12
Identities = 63/212 (29%), Positives = 105/212 (49%), Gaps = 42/212 (19%)
Query: 80 TLF-----EPEDD----------GDVLIDCRNVYKSFGEKHI--LRGVSFKIRHGEAVGI 122
TLF E E D GD I+ RNV ++ K + LR ++FKI G+ V +
Sbjct: 317 TLFAILDLEQEKDEGKRVIERAKGD--IEFRNVTFTYPGKEVPALRNINFKIPAGKTVAL 374
Query: 123 IGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR--IGLVFQSAALFD 180
+G SG+GKSTI ++ D+GE+ + G + D ++ LR + LV Q+ LF+
Sbjct: 375 VGRSGSGKSTIANLLTRFYDIDEGEILLDGHD----LRDYTLASLRNQVALVSQNVHLFN 430
Query: 181 SLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSE-------LSGGMKK 233
T+ N+ + + EQI E + A + +++ L + LSGG ++
Sbjct: 431 D-TIANNIAYA--RTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQ 487
Query: 234 RVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
R+A+AR+++ D+ +L+ DE T+ LD
Sbjct: 488 RIAIARALLRDSP-------ILILDEATSALD 512
|
Length = 582 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 4e-12
Identities = 60/207 (28%), Positives = 96/207 (46%), Gaps = 41/207 (19%)
Query: 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLV 172
+I GE +GI+GP+G GK+T +K++AG++ PD+G L++
Sbjct: 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSE----------------EDLKVSYK 406
Query: 173 FQS-AALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAA-VGLKGVEDRLPSELSGG 230
Q + +D TV + LL S +R S K + + L+ + +R ELSGG
Sbjct: 407 PQYISPDYDG-TVED----LLR--SAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGG 459
Query: 231 MKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANP 290
+RVA+A ++ S E ++ L DEP+A LD +V +IR + E
Sbjct: 460 ELQRVAIAAAL-------SREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNE------ 506
Query: 291 GNIASYVVVTHQHSTIRRAVDRLCLFQ 317
+ +VV H I DRL +F+
Sbjct: 507 ---KTALVVDHDIYMIDYVSDRLIVFE 530
|
Length = 591 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 64.2 bits (156), Expect = 4e-12
Identities = 53/219 (24%), Positives = 102/219 (46%), Gaps = 26/219 (11%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
++D + + ++ +L+ +SF + G + + G +G GK+T+LK+IAGLL P+KGE+
Sbjct: 1 MLDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILF 60
Query: 151 RGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKEN 210
+ + D ++ V + + LT+REN + ++ + I+EL +
Sbjct: 61 ERQS---IKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPG--AVGITELCR-- 113
Query: 211 LAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAST 270
L+ + D LS G K++VAL R + + ++ L DEP LD ++
Sbjct: 114 --LFSLEHLIDYPCGLLSSGQKRQVALLRLWM-------SKAKLWLLDEPLVALDELSLL 164
Query: 271 VVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA 309
+ I+ KG + ++ +HQ + +A
Sbjct: 165 TIITKIQEHRAKG----------GAVLLTSHQDLPLNKA 193
|
Length = 200 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 5e-12
Identities = 67/231 (29%), Positives = 108/231 (46%), Gaps = 36/231 (15%)
Query: 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKS-TILKIIAGLLAPDKGEVYIRGRKR-AG--- 157
+ ++ VS +I GE + ++G SG+GKS T L I+ L P VY G R G
Sbjct: 21 VRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILR--LLPSPPVVYPSGDIRFHGESL 78
Query: 158 LISDEE----ISGLRIGLVFQSAALFDSLTVRENVGFLLYE----NSKMRDEQISELVKE 209
L + E+ + G +I ++FQ + SL + LYE + MR E +
Sbjct: 79 LHASEQTLRGVRGNKIAMIFQEPMV--SLNPLHTLEKQLYEVLSLHRGMRREAARGEILN 136
Query: 210 NLAAVGLKGVEDRL---PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDP 266
L VG++ RL P +LSGG ++RV +A +++ PE+L+ DEPT LD
Sbjct: 137 CLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALL-------TRPELLIADEPTTALDV 189
Query: 267 IASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQ 317
+ L+R + + E + + +TH S +R+ DR+ + Q
Sbjct: 190 SVQAQILQLLREL--QQELNM-------GLLFITHNLSIVRKLADRVAVMQ 231
|
Length = 529 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 5e-12
Identities = 51/217 (23%), Positives = 89/217 (41%), Gaps = 45/217 (20%)
Query: 67 TKFNDSSKSENVNTLFEPEDDGDVLIDCRNVYK-SF--------GEKHILRGVSFKIRHG 117
+F + ++ ++T + D + + + +L ++F++R G
Sbjct: 360 AEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDGQTLLSELNFEVRPG 419
Query: 118 EAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAA 177
E + I G SG GK+++L+ +AGL + G R + +D + L
Sbjct: 420 ERLLITGESGAGKTSLLRALAGL--------WPWGSGRISMPADSAL------LFLPQRP 465
Query: 178 LFDSLTVRENVGFLLYENS--KMRDEQISELVKENLAAVGLK------GVEDRLPSELSG 229
T+RE L Y N+ D ++ + L VGL EDR LSG
Sbjct: 466 YLPQGTLRE---ALCYPNAAPDFSDAELVAV----LHKVGLGDLAERLDEEDRWDRVLSG 518
Query: 230 GMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDP 266
G ++R+A AR ++ K P+ + DE T+ LD
Sbjct: 519 GEQQRLAFARLLL---HK----PKWVFLDEATSALDE 548
|
Length = 604 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 8e-12
Identities = 62/195 (31%), Positives = 98/195 (50%), Gaps = 29/195 (14%)
Query: 89 DVLIDCRNVYKSF----GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD 144
D L+D +++ +F G+ + ++F +R GE +GI+G SG+GKS + GLLA +
Sbjct: 10 DALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAAN 69
Query: 145 ---KGEVYIRGRKRAGLISDEEISGLR---IGLVFQSAALFDSLTVRENVGFLLYE---- 194
G GR+ L ++E++ LR I ++FQ SL VG L E
Sbjct: 70 GRIGGSATFNGREILNL-PEKELNKLRAEQISMIFQDP--MTSLNPYMRVGEQLMEVLML 126
Query: 195 NSKM-RDEQISELVKENLAAVGLKGVEDRL---PSELSGGMKKRVALARSIIFDNTKESV 250
+ M + E E V+ L AV + R+ P E SGGM++RV +A +++
Sbjct: 127 HKGMSKAEAFEESVRM-LDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALL-------C 178
Query: 251 EPEVLLYDEPTAGLD 265
P++L+ DEPT LD
Sbjct: 179 RPKLLIADEPTTALD 193
|
Length = 330 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 9e-12
Identities = 49/153 (32%), Positives = 73/153 (47%), Gaps = 28/153 (18%)
Query: 114 IRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVF 173
I E +GI+GP+G GK+T +K++AG+L PD+G D EI +
Sbjct: 22 ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEG--------------DIEIELDTVSYKP 67
Query: 174 QSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLA-AVGLKGVEDRLPSELSGGMK 232
Q TVR+ LL S +D K +A + ++ + DR ELSGG
Sbjct: 68 QYIKADYEGTVRD----LLS--SITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGEL 121
Query: 233 KRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
+RVA+A + S + ++ L DEP+A LD
Sbjct: 122 QRVAIAACL-------SKDADIYLLDEPSAYLD 147
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 9e-12
Identities = 51/181 (28%), Positives = 87/181 (48%), Gaps = 18/181 (9%)
Query: 111 SFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170
S ++R GE + ++GP+G GKST+L +AG+ G + G + S E++ R
Sbjct: 19 SGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAG-QPLEAWSATELARHRAY 76
Query: 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP---SEL 227
L Q F ++ V + L++ K R E ++++ G ++D+L ++L
Sbjct: 77 LSQQQTPPF-AMPVWHYLT--LHQPDKTRTELLNDV-------AGALALDDKLGRSTNQL 126
Query: 228 SGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGL 287
SGG +RV LA ++ + ++LL DEP LD +A D R + + GL
Sbjct: 127 SGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLD-VAQQSALD--RLLSALCQQGL 183
Query: 288 A 288
A
Sbjct: 184 A 184
|
Length = 248 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 2e-11
Identities = 57/176 (32%), Positives = 83/176 (47%), Gaps = 21/176 (11%)
Query: 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL----APD----KGEVYIRGRKRAG 157
ILR +S +I G ++G +G GKST+LK +AG L AP G+V + G A
Sbjct: 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAA 75
Query: 158 LISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSK------MRDEQISELVKENL 211
I ++ LR L + F + + RE V Y +++ RD +I+ + L
Sbjct: 76 -IDAPRLARLRAVLPQAAQPAF-AFSAREIVLLGRYPHARRAGALTHRDGEIAW---QAL 130
Query: 212 AAVGLKGVEDRLPSELSGGMKKRVALARSI--IFDNTKESVEPEVLLYDEPTAGLD 265
A G + R + LSGG RV AR + ++ + P LL DEPTA LD
Sbjct: 131 ALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALD 186
|
Length = 272 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 3e-11
Identities = 64/193 (33%), Positives = 90/193 (46%), Gaps = 55/193 (28%)
Query: 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165
+LRGVSF+I E VGI+G +G+GKST+L ++ GE+ + GR EI
Sbjct: 1325 VLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGR---------EIG 1375
Query: 166 --GLR-----IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG 218
GLR ++ Q LFD TVR+NV L +S E AA+ L G
Sbjct: 1376 AYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPFLEASS-----------AEVWAALELVG 1423
Query: 219 VEDRLPSELSGGMKKRV---------------ALARSIIFDNTKESVEPEVLLYDEPTAG 263
+ +R+ SE S G+ RV +AR+++ K S +L DE TA
Sbjct: 1424 LRERVASE-SEGIDSRVLEGGSNYSVGQRQLMCMARALL---KKGS---GFILMDEATAN 1476
Query: 264 LDP-----IASTV 271
+DP I +TV
Sbjct: 1477 IDPALDRQIQATV 1489
|
Length = 1560 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 7e-11
Identities = 65/235 (27%), Positives = 106/235 (45%), Gaps = 41/235 (17%)
Query: 83 EPEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA 142
PE + L+ V +G++ IL + + G +G++G +G GKST++K++AG LA
Sbjct: 304 APESLPNPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA 363
Query: 143 PDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQ 202
P GE+ GL G+++G Q F L E+ L +++ ++
Sbjct: 364 PVSGEI--------GL-----AKGIKLGYFAQHQLEF--LRADESP---LQHLARLAPQE 405
Query: 203 ISELVKENLAAVGLKGVEDRLPSE-LSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPT 261
+ + +++ L G +G + + SGG K R+ LA I++ P +LL DEPT
Sbjct: 406 LEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLAL-IVWQ------RPNLLLLDEPT 458
Query: 262 AGLD-PIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCL 315
LD + + E LI E L VVV+H +R D L L
Sbjct: 459 NHLDLDMRQALTEALI-----DFEGAL---------VVVSHDRHLLRSTTDDLYL 499
|
Length = 638 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 7e-11
Identities = 58/198 (29%), Positives = 86/198 (43%), Gaps = 35/198 (17%)
Query: 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV-----------YIRGRKRAGLISDEE 163
R G+ +G++GP+G GKST LKI+AG L P+ G+ RG + +
Sbjct: 24 REGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLL 83
Query: 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL 223
+++ + Q L V+ VG LL K ++ ELV + L+ V DR
Sbjct: 84 EGDVKVIVKPQYVDLIPK-AVKGKVGELL--KKKDERGKLDELVD----QLELRHVLDRN 136
Query: 224 PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKG 283
+LSGG +RVA+A ++ D +DEP++ LD LIR
Sbjct: 137 IDQLSGGELQRVAIAAALARDAD-------FYFFDEPSSYLDIKQRLNAARLIRE----- 184
Query: 284 ENGLANPGNIASYVVVTH 301
LA N +VV H
Sbjct: 185 ---LAEDDN--YVLVVEH 197
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 8e-11
Identities = 76/248 (30%), Positives = 110/248 (44%), Gaps = 63/248 (25%)
Query: 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS-DEEI 164
+LR V+ R G ++G SG GK+T++ ++A GRK G I D I
Sbjct: 895 LLREVTGAFRPGVLTALMGVSGAGKTTLMDVLA-------------GRKTGGYIEGDIRI 941
Query: 165 SGL--------RI-GLVFQSAALFDSLTVRENV---GFL-----LYENSKMR-DEQISEL 206
SG RI G Q+ +TVRE++ FL + + KM +++ EL
Sbjct: 942 SGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMEL 1001
Query: 207 VK-ENL--AAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAG 263
V+ +NL A VGL GV + LS +KR+ +A ++ P ++ DEPT+G
Sbjct: 1002 VELDNLKDAIVGLPGV-----TGLSTEQRKRLTIAVELV-------ANPSIIFMDEPTSG 1049
Query: 264 LDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVT-HQHST-IRRAVDRLCLFQIFGH 321
LD A+ +V +R+ G VV T HQ S I A D L L + G
Sbjct: 1050 LDARAAAIVMRTVRNTVDTGRT-----------VVCTIHQPSIDIFEAFDELLLMKRGGQ 1098
Query: 322 IDVVIILG 329
VI G
Sbjct: 1099 ---VIYSG 1103
|
Length = 1470 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 9e-11
Identities = 65/221 (29%), Positives = 103/221 (46%), Gaps = 47/221 (21%)
Query: 75 SENVN--TLFEPED--------DGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIG 124
SE + L EP++ + I N S+ ++ IL +S+++ GE I+G
Sbjct: 234 SEQLEGVQLPEPDEPSARHALPANEPRIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVG 293
Query: 125 PSGTGKSTILKIIAGLLAPDKGEVY-----IRGRKRAGLISDEEISGLR--IGLVFQSAA 177
P+G GKST+L +I G D + Y + GR+R S E I ++ IG V S
Sbjct: 294 PNGAGKSTLLSLITG----DHPQGYSNDLTLFGRRRG---SGETIWDIKKHIGYVSSSLH 346
Query: 178 LFD---SLTVRENV---GFL----LYENSKMRDEQISELVKENLAAVGL-KGVEDRLPSE 226
L D S +VR NV GF +Y+ R ++ L ++ L +G+ K D
Sbjct: 347 L-DYRVSTSVR-NVILSGFFDSIGIYQAVSDRQQK---LAQQWLDILGIDKRTADAPFHS 401
Query: 227 LSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPI 267
LS G ++ + R+++ P +L+ DEP GLDP+
Sbjct: 402 LSWGQQRLALIVRALV-------KHPTLLILDEPLQGLDPL 435
|
Length = 490 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 1e-10
Identities = 69/211 (32%), Positives = 93/211 (44%), Gaps = 47/211 (22%)
Query: 111 SFKI------RHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV-----------YIRGR 153
FK+ R G+ VGI+GP+G GKST LKI+AG L P+ G RG
Sbjct: 88 GFKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGT 147
Query: 154 KRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQ--ISELVKENL 211
+ LR Q L + V+ VG LL K DE+ E+V+
Sbjct: 148 ELQNYFKKLYEGELRAVHKPQYVDLIPKV-VKGKVGELL----KKVDERGKFDEVVER-- 200
Query: 212 AAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTV 271
+GL+ V DR SELSGG +RVA+A ++ + +V +DEP++ LD
Sbjct: 201 --LGLENVLDRDVSELSGGELQRVAIAAAL-------LRDADVYFFDEPSSYLDIRQRLN 251
Query: 272 VEDLIRSVHKKGENGLANPGNIASYV-VVTH 301
+IR LA G YV VV H
Sbjct: 252 AARVIRE--------LAEDGK---YVIVVEH 271
|
Length = 591 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.0 bits (153), Expect = 1e-10
Identities = 52/162 (32%), Positives = 80/162 (49%), Gaps = 30/162 (18%)
Query: 102 GEKH-ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS 160
GE H L +SF++ GE VGIIG +G+GKST+ +IAG+ P+KG V I+G A LI+
Sbjct: 34 GEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKG--SAALIA 91
Query: 161 DEEISGLRIGLVFQSAALFDSLTVRENV---GFLLYENSKMRDEQISELVKENLAAVGLK 217
S+ L LT EN+ G ++ + E+I E++ E + +
Sbjct: 92 -------------ISSGLNGQLTGIENIELKGLMM----GLTKEKIKEIIPEIIEFADIG 134
Query: 218 GVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDE 259
+ S GMK R+ A S+ + P++L+ DE
Sbjct: 135 KFIYQPVKTYSSGMKSRLGFAISV-------HINPDILVIDE 169
|
Length = 549 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 1e-10
Identities = 53/181 (29%), Positives = 84/181 (46%), Gaps = 15/181 (8%)
Query: 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154
RNV + +L +S G+ G+IG +G+GKST+LK++ P +GE+ + +
Sbjct: 15 RNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQP 74
Query: 155 RAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLY----ENSKMRDEQISELVKEN 210
+ ++ + Q + +TVRE V Y + E V+E
Sbjct: 75 LESW--SSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAAD-REKVEEA 131
Query: 211 LAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAST 270
++ VGLK + RL LSGG ++R +A + D+ LL DEPT+ LD IA
Sbjct: 132 ISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDS-------RCLLLDEPTSALD-IAHQ 183
Query: 271 V 271
V
Sbjct: 184 V 184
|
Length = 265 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 2e-10
Identities = 66/215 (30%), Positives = 97/215 (45%), Gaps = 51/215 (23%)
Query: 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165
+ + ++F I + ++GP+G GKSTILK+I+G L P G V+ + R + S +
Sbjct: 524 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVD 583
Query: 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMR-----DEQISELVKENLAAVGLKGVE 220
GL + + LLY MR EQ ++ +L + G+ G
Sbjct: 584 GLDL-----------------SSNPLLY---MMRCFPGVPEQ---KLRAHLGSFGVTGNL 620
Query: 221 DRLPS-ELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSV 279
P LSGG K RVA A+ I F +P +LL DEP+ LD A VE LI+
Sbjct: 621 ALQPMYTLSGGQKSRVAFAK-ITFK------KPHILLLDEPSNHLDLDA---VEALIQ-- 668
Query: 280 HKKGENGLA-NPGNIASYVVVTHQHSTIRRAVDRL 313
GL G + ++V+H I +VD L
Sbjct: 669 ------GLVLFQGGV---LMVSHDEHLISGSVDEL 694
|
Length = 718 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 3e-10
Identities = 46/190 (24%), Positives = 88/190 (46%), Gaps = 30/190 (15%)
Query: 108 RGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG- 166
R +S ++R GE +G+ G G G++ + + + GL G + + G+ EI+
Sbjct: 280 RNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGK---------EINAL 330
Query: 167 -----LRIGLVF-----QSAALFDSLTVRENVGFLLYENSK--MRDEQISELVKENLAAV 214
L GLV+ QS+ L+ + NV L + ++ + + +++ A+
Sbjct: 331 STAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRAL 390
Query: 215 GLKGVEDRLPSE-LSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVE 273
+K + LSGG +++V +A+ + P++L+ DEPT G+D A +
Sbjct: 391 NIKFNHAEQAARTLSGGNQQKVLIAKCL-------EASPQLLIVDEPTRGVDVSARNDIY 443
Query: 274 DLIRSVHKKG 283
LIRS+ +
Sbjct: 444 QLIRSIAAQN 453
|
Length = 510 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 4e-10
Identities = 49/188 (26%), Positives = 91/188 (48%), Gaps = 21/188 (11%)
Query: 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166
+ VSF +R GE +G+ G G G++ ++K++ G L G V + G + +++ G
Sbjct: 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHE---VVTRSPQDG 324
Query: 167 LRIGLVFQSA-----ALFDSLTVREN-----VGFLLYENSKMRDEQISELVKENLAAVGL 216
L G+V+ S L ++V+EN + + ++ + V + + +
Sbjct: 325 LANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNI 384
Query: 217 KG-VEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDL 275
K ++ LSGG +++VA+AR ++ T+ P+VL+ DEPT G+D A + L
Sbjct: 385 KTPSMEQAIGLLSGGNQQKVAIARGLM---TR----PKVLILDEPTRGVDVGAKKEIYQL 437
Query: 276 IRSVHKKG 283
I +G
Sbjct: 438 INQFKAEG 445
|
Length = 501 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 6e-10
Identities = 57/218 (26%), Positives = 95/218 (43%), Gaps = 36/218 (16%)
Query: 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD----KGEVYIRGRKRAGLISD 161
++ GVS ++ G + ++G SG+GKS G+L G V + G+ A
Sbjct: 18 LVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAP---- 73
Query: 162 EEISGLRIGLVFQ---SAALFDSL-TVRENVGFLLYENSKMRDEQISELVKENLAAVGLK 217
+ G +I + Q SA F+ L T+ + K D+ + L AVGL+
Sbjct: 74 CALRGRKIATIMQNPRSA--FNPLHTMHTHARETCLALGKPADDA---TLTAALEAVGLE 128
Query: 218 GVE---DRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVED 274
P E+SGGM +R+ +A +++ E ++ DEPT LD +A + D
Sbjct: 129 NAARVLKLYPFEMSGGMLQRMMIALALL-------CEAPFIIADEPTTDLDVVAQARILD 181
Query: 275 LIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDR 312
L+ S+ +K G+ ++VTH + R D
Sbjct: 182 LLESIVQKRALGM---------LLVTHDMGVVARLADD 210
|
Length = 254 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 7e-10
Identities = 49/192 (25%), Positives = 93/192 (48%), Gaps = 12/192 (6%)
Query: 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154
+ K+F L +SF R G+ ++G +G GKST+LKI++G PD G + I G++
Sbjct: 8 DGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQE 67
Query: 155 RAGLISDEEI-SGLRIGLVFQSAALFDSLTVRENV--GFLLYENSKMRDEQISELVKENL 211
+ + +G + +++Q L +TV EN+ G L ++ + ++ +E L
Sbjct: 68 MRFASTTAALAAG--VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQL 125
Query: 212 AAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTV 271
+G+ D LS G ++ V +A+++ + V+ +DEPT+ L
Sbjct: 126 EHLGVDIDPDTPLKYLSIGQRQMVEIAKALARN-------ARVIAFDEPTSSLSAREIEQ 178
Query: 272 VEDLIRSVHKKG 283
+ +IR + +G
Sbjct: 179 LFRVIRELRAEG 190
|
Length = 501 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 9e-10
Identities = 73/277 (26%), Positives = 122/277 (44%), Gaps = 61/277 (22%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--LAPDKGEV 148
++ ++++ S +K ILRG++ ++R GE I+GP+G+GKST+ +AG G V
Sbjct: 1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTV 60
Query: 149 YIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQ------ 202
+G+ L S E+ +G I + FQ ++ + + L R ++
Sbjct: 61 EFKGKDLLEL-SPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFD 119
Query: 203 ISELVKENLAAVGLKGVEDRLPSEL----SGGMKKRVALARSIIFDNTKESVEPEVLLYD 258
+L++E +A LK ED L + SGG KKR + + +EPE+ + D
Sbjct: 120 FQDLMEEKIAL--LKMPEDLLTRSVNVGFSGGEKKRNDILQ-------MAVLEPELCILD 170
Query: 259 EPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQI 318
E +GLD A +V D G N L + S+++VTH
Sbjct: 171 ESDSGLDIDALKIVAD--------GVNSLRDGKR--SFIIVTHYQR-------------- 206
Query: 319 FGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQG 355
IL + PD +++ LY+G+IV G
Sbjct: 207 --------ILDYIKPD----YVH---VLYQGRIVKSG 228
|
Length = 248 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 9e-10
Identities = 72/280 (25%), Positives = 116/280 (41%), Gaps = 61/280 (21%)
Query: 64 FPATKFNDSSKSENVNTLFEPEDDGDVLIDCRNV-----YKSFGEKHILRGVSFKIRHGE 118
+T D S N + ++ G+ + RN+ K ++ IL V ++ G
Sbjct: 733 LGSTDLTDESDDVN-DEKDMEKESGEDIFHWRNLTYEVKIKK-EKRVILNNVDGWVKPGT 790
Query: 119 AVGIIGPSGTGKSTILKIIAGLLAP---DKGEVYIRGRKRAGLISDEEISGLRIGLVFQS 175
++G SG GK+T+L ++A + G+ + GR D IG V Q
Sbjct: 791 LTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPL-----DSSFQ-RSIGYVQQQ 844
Query: 176 AALFDSLTVRENVGFLLY--------ENSKMR--DEQISELVKENL--AAVGLKG----V 219
+ TVRE++ F Y ++ KM +E I L E+ A VG+ G V
Sbjct: 845 DLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNV 904
Query: 220 EDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLY-DEPTAGLDPIASTVVEDLIRS 278
E R KR+ + ++ +P++LL+ DEPT+GLD + + L+R
Sbjct: 905 EQR----------KRLTIGVELV-------AKPKLLLFLDEPTSGLDSQTAWSICKLMRK 947
Query: 279 VHKKGENGLANPGNIASYVVVTHQHS-TIRRAVDRLCLFQ 317
LA+ G + + HQ S + DRL L Q
Sbjct: 948 --------LADHGQ--AILCTIHQPSAILFEEFDRLLLLQ 977
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 2e-09
Identities = 56/190 (29%), Positives = 88/190 (46%), Gaps = 45/190 (23%)
Query: 114 IRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV-----------YIRG-------RKR 155
+ G+ GI+GP+G GK+T +KI++G L P+ G+ RG +K
Sbjct: 96 PKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKK- 154
Query: 156 AGLISDEEIS-GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQ--ISELVKENLA 212
+ + EI + V +F VRE LL K DE+ + E+V+
Sbjct: 155 ---LYNGEIKVVHKPQYVDLIPKVFKG-KVRE----LL----KKVDERGKLDEVVER--- 199
Query: 213 AVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVV 272
+GL+ + DR SELSGG +RVA+A ++ + + +DEPT+ LD V
Sbjct: 200 -LGLENILDRDISELSGGELQRVAIAAAL-------LRDADFYFFDEPTSYLDIRQRLNV 251
Query: 273 EDLIRSVHKK 282
LIR + +
Sbjct: 252 ARLIRELAEG 261
|
Length = 590 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 2e-09
Identities = 63/219 (28%), Positives = 102/219 (46%), Gaps = 56/219 (25%)
Query: 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE 163
K +LR VS + G+ ++G +G+GKST+L+ + +G V+ E
Sbjct: 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVW------------AE 720
Query: 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYEN-SKMRDE-QISELVKENLAA-------- 213
S I V Q A + ++ TVR N+ F E+ +++ D ++S+L + +LA
Sbjct: 721 RS---IAYVPQQAWIMNA-TVRGNILFFDEEDAARLADAVRVSQL-EADLAQLGGGLETE 775
Query: 214 VGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDP-IASTVV 272
+G KGV LSGG K RV+LAR++ + +V L D+P + LD + VV
Sbjct: 776 IGEKGV------NLSGGQKARVSLARAVYANR-------DVYLLDDPLSALDAHVGERVV 822
Query: 273 EDLIRSVHKKGENGLANPGNIA--SYVVVTHQHSTIRRA 309
E+ G +A + V+ THQ + RA
Sbjct: 823 EECFL-------------GALAGKTRVLATHQVHVVPRA 848
|
Length = 1560 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 2e-09
Identities = 55/230 (23%), Positives = 102/230 (44%), Gaps = 41/230 (17%)
Query: 92 IDCRNVYKSF-GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
ID NV ++ + +L+ ++ + V ++G +G+GKST+ ++ G +GE+ +
Sbjct: 341 IDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRL 400
Query: 151 RGRKRAGLISDEEISGLRIGL-------VFQSAALFDSLTVRENVGFLLYENSKMRDEQI 203
GR + L S LR G+ V + ++T+ ++ S+ + Q
Sbjct: 401 DGRPLSSLSH----SVLRQGVAMVQQDPVVLADTFLANVTLGRDI-------SEEQVWQA 449
Query: 204 SELVKENLAAVGL-KGVEDRLPSE---LSGGMKKRVALARSIIFDNTKESVEPEVLLYDE 259
E V+ A L G+ L + LS G K+ +ALAR ++ P++L+ DE
Sbjct: 450 LETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQ-------TPQILILDE 502
Query: 260 PTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA 309
TA +D ++ + +V + + VV+ H+ STI A
Sbjct: 503 ATANIDSGTEQAIQQALAAVREH-----------TTLVVIAHRLSTIVEA 541
|
Length = 592 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 2e-09
Identities = 69/310 (22%), Positives = 131/310 (42%), Gaps = 88/310 (28%)
Query: 84 PEDDGDVLIDCRNVYKSF---GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL 140
P + G I +N Y S+ E+ L ++ + G V I+G +G GK++++ + G
Sbjct: 607 PLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGE 666
Query: 141 LAP-DKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGF-LLYENSKM 198
L P V IRG + V Q + +F++ TVR+N+ F ++ +
Sbjct: 667 LPPRSDASVVIRG---------------TVAYVPQVSWIFNA-TVRDNILFGSPFDPERY 710
Query: 199 -RDEQISELVKE-------NLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250
R ++ L + +L +G +GV +SGG K+RV++AR++ ++
Sbjct: 711 ERAIDVTALQHDLDLLPGGDLTEIGERGV------NISGGQKQRVSMARAVYSNS----- 759
Query: 251 EPEVLLYDEPTAGLDP-IASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA 309
+V ++D+P + LD + V + I+ + + V+VT+Q
Sbjct: 760 --DVYIFDDPLSALDAHVGRQVFDKCIKDELRG-----------KTRVLVTNQ------- 799
Query: 310 VDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQ 369
+D R+I ++EG I +G T+E S++ P+ Q
Sbjct: 800 ------LHFLSQVD------------------RIILVHEGMIKEEG-TYEELSNNGPLFQ 834
Query: 370 QFA--SGSLE 377
+ +G +E
Sbjct: 835 KLMENAGKME 844
|
Length = 1622 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 2e-09
Identities = 44/184 (23%), Positives = 79/184 (42%), Gaps = 43/184 (23%)
Query: 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD---KGEVYIR 151
K + IL+ S ++ GE V ++G G+G ST+LK +A + +G++
Sbjct: 11 FTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDI--- 67
Query: 152 GRKRAGLISDEEISGLRIGLVF--QSAALFDSLTVRENVGFLLYENSKMRDEQISELVKE 209
G+ E +++ + F +LTVRE + F L + + +
Sbjct: 68 --HYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFAL----RCKGNEF------ 115
Query: 210 NLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAS 269
++G+ SGG +KRV++A +++ VL +D T GLD +S
Sbjct: 116 ------VRGI--------SGGERKRVSIAEALV-------SRASVLCWDNSTRGLD--SS 152
Query: 270 TVVE 273
T +E
Sbjct: 153 TALE 156
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 3e-09
Identities = 61/203 (30%), Positives = 88/203 (43%), Gaps = 54/203 (26%)
Query: 96 NVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKR 155
N+ FG K + +S K G G+IG +G GKST +KI+ G L P G V +
Sbjct: 6 NITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLD---- 61
Query: 156 AGLISDEEISGLRIGLVFQSAALFDSLTVRENV--GFL-----------LYENSKMRDE- 201
R+G + Q F+ TV + V G +Y +M +E
Sbjct: 62 ---------PNERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEED 112
Query: 202 --QISEL-VK--------------ENLAAVGLKGVEDR--LPSELSGGMKKRVALARSII 242
++++L VK E L VG+ E L SE++ G K RV LA++ +
Sbjct: 113 GMKVADLEVKFAEMDGYTAEARAGELLLGVGI-PEEQHYGLMSEVAPGWKLRVLLAQA-L 170
Query: 243 FDNTKESVEPEVLLYDEPTAGLD 265
F N P++LL DEPT LD
Sbjct: 171 FSN------PDILLLDEPTNNLD 187
|
Length = 530 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 4e-09
Identities = 45/170 (26%), Positives = 84/170 (49%), Gaps = 40/170 (23%)
Query: 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS-DEEI 164
+L+ ++ KI GE + I G +G+GK+++L +I G L P +G++ K +G IS +
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKI-----KHSGRISFSSQF 106
Query: 165 SGLRIGLVFQSAALFDSLTVRENVGF-LLYENSKMR--------DEQISELVKENLAAVG 215
S + G T++EN+ F + Y+ + + +E I++ +++ +G
Sbjct: 107 SWIMPG------------TIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLG 154
Query: 216 LKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
G+ LSGG + R++LAR++ D ++ L D P LD
Sbjct: 155 EGGI------TLSGGQRARISLARAVYKD-------ADLYLLDSPFGYLD 191
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 5e-09
Identities = 62/241 (25%), Positives = 97/241 (40%), Gaps = 90/241 (37%)
Query: 102 GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD 161
G++ +L +S ++ G ++G SG GK+T+L ++A GRK AG+I+
Sbjct: 18 GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLA-------------GRKTAGVITG 64
Query: 162 E-EISGL--------RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLA 212
E I+G G V Q +LTVRE + F ++ +R
Sbjct: 65 EILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRF----SALLR------------- 107
Query: 213 AVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE----PEVLLYDEPTAGLDPIA 268
GL VE R KR+ + VE P +L DEPT+GLD A
Sbjct: 108 --GL-SVEQR----------KRLTIG-----------VELAAKPSILFLDEPTSGLDSQA 143
Query: 269 STVVEDLIRSVHKKGENGLANPGNIASYVVVT-HQHSTIRRAVDRLCLFQIFGHIDVVII 327
+ + +R + K ++G A ++ T HQ S IF D +++
Sbjct: 144 AYNI---VRFLKKLADSGQA--------ILCTIHQPSA-----------SIFEKFDRLLL 181
Query: 328 L 328
L
Sbjct: 182 L 182
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 55.3 bits (133), Expect = 5e-09
Identities = 50/188 (26%), Positives = 86/188 (45%), Gaps = 29/188 (15%)
Query: 122 IIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDS 181
I G +G GKS++L++IAG++ P G +Y + + I+ + + L
Sbjct: 31 IKGANGCGKSSLLRMIAGIMQPSSGNIYYKN------CNINNIAKPYCTYIGHNLGLKLE 84
Query: 182 LTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSI 241
+TV EN+ F S++ + +E + + L + D LS GM+K VA+AR I
Sbjct: 85 MTVFENLKFW----SEIYNS--AETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLI 138
Query: 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTH 301
+ + ++ L DE L ++ +LI V K AN G I ++ +H
Sbjct: 139 -------ACQSDLWLLDEVETNLSKENRDLLNNLI--VMK------ANSGGIV--LLSSH 181
Query: 302 QHSTIRRA 309
S+I+ A
Sbjct: 182 LESSIKSA 189
|
Length = 195 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 6e-09
Identities = 55/185 (29%), Positives = 91/185 (49%), Gaps = 27/185 (14%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
L+ + + K+F L G + + G + ++G +G GKST++K++ G+ D G +
Sbjct: 4 LLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILY 63
Query: 151 RGRKRA--GLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYEN---------SKMR 199
G++ G S +E +G IG++ Q L LT+ EN+ FL E KM
Sbjct: 64 LGKEVTFNGPKSSQE-AG--IGIIHQELNLIPQLTIAENI-FLGREFVNRFGRIDWKKMY 119
Query: 200 DEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDE 259
E +L LA + L+ D+L ELS G ++ V +A+ + F E +V++ DE
Sbjct: 120 AEA-DKL----LARLNLRFSSDKLVGELSIGEQQMVEIAKVLSF-------ESKVIIMDE 167
Query: 260 PTAGL 264
PT L
Sbjct: 168 PTDAL 172
|
Length = 501 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 7e-09
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 96 NVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV 148
N+ K F + + ++ + GE + IIG +G GK+T+L+ + G L PD G V
Sbjct: 324 NLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTV 376
|
Length = 530 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 1e-08
Identities = 45/170 (26%), Positives = 83/170 (48%), Gaps = 40/170 (23%)
Query: 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS-DEEI 164
+L+ +SFK+ G+ + + G +G+GKS++L +I G L P +G++ K +G IS +
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKI-----KHSGRISFSPQT 495
Query: 165 SGLRIGLVFQSAALFDSLTVRENVGF-LLYENSKMR--------DEQISELVKENLAAVG 215
S + G T+++N+ F L Y+ + +E I+ +++ +G
Sbjct: 496 SWIMPG------------TIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLG 543
Query: 216 LKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
G+ LSGG + R++LAR++ D ++ L D P LD
Sbjct: 544 EGGI------TLSGGQRARISLARAVYKD-------ADLYLLDSPFTHLD 580
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 2e-08
Identities = 60/254 (23%), Positives = 107/254 (42%), Gaps = 58/254 (22%)
Query: 83 EPEDDGDVLIDCRNVYK-SFGEKHILR--GVSFKIRHGEAVGIIGPSGTGKSTILKIIAG 139
EP + GDV+++ RN+ H R VSF +R GE +G+ G G G++ +++ + G
Sbjct: 249 EPHEIGDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFG 308
Query: 140 LLAPDK--GEVYIRG----------------------RKRAGLISDEEISGLRIGLVFQS 175
P K G V+I G RKR G++ + G I L
Sbjct: 309 AY-PGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGV-GKNITL---- 362
Query: 176 AALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-SELSGGMKKR 234
++ S + ++ +++ + + +K LP LSGG +++
Sbjct: 363 -SVLKSFCFK----------MRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQK 411
Query: 235 VALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKG------ENGLA 288
LA+ ++ + P VL+ DEPT G+D A + LI + ++G + LA
Sbjct: 412 AVLAKMLLTN-------PRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELA 464
Query: 289 NPGNIASYVVVTHQ 302
++ V+V +
Sbjct: 465 EVLGLSDRVLVIGE 478
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 2e-08
Identities = 47/164 (28%), Positives = 74/164 (45%), Gaps = 30/164 (18%)
Query: 110 VSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR- 168
++ I+ GE + +IG +G+GKST+ ++ GL P GE+ + G+ ++ E+ R
Sbjct: 342 INLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKP----VTAEQPEDYRK 397
Query: 169 -IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG---VEDR-- 222
VF LFD L E LV++ L + + +ED
Sbjct: 398 LFSAVFTDFHLFDQLLGPEG------------KPANPALVEKWLERLKMAHKLELEDGRI 445
Query: 223 LPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDP 266
+LS G KKR+AL ++ E E ++LL DE A DP
Sbjct: 446 SNLKLSKGQKKRLALLLALA-----E--ERDILLLDEWAADQDP 482
|
Length = 547 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 4e-08
Identities = 44/214 (20%), Positives = 99/214 (46%), Gaps = 32/214 (14%)
Query: 87 DGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG 146
+ + + RNV +K +R +SF + GE +G G G+G++ ++ + G+ G
Sbjct: 261 AHETVFEVRNVTSRDRKK--VRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGG 318
Query: 147 EVYIRGRKRAGLISDEEISGLRIGLVF-----QSAALFDSLTVRENV------------G 189
E+ + G+ + + ++ G+ + + F + ++ +N+ G
Sbjct: 319 EIRLNGKD---ISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKG 375
Query: 190 FLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249
+ + +++ +E +E L A+ V + +ELSGG +++V +++ +
Sbjct: 376 AMGLFHEVD-EQRTAENQRELL-ALKCHSVNQNI-TELSGGNQQKVLISKWL-------C 425
Query: 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKG 283
PEV+++DEPT G+D A + ++R + G
Sbjct: 426 CCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDG 459
|
Length = 510 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 5e-08
Identities = 58/253 (22%), Positives = 107/253 (42%), Gaps = 56/253 (22%)
Query: 91 LIDCRNVYKSF----GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL------ 140
L+D RN+ F G + VS + GE G++G SG+GKS I K I G+
Sbjct: 3 LLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWR 62
Query: 141 LAPDKGE------VYIRGRKRAGLISDEEISGLRIGLVFQ--SAALFDSLTVR----ENV 188
+ D+ + + R+R L+ + ++FQ + L S V +N+
Sbjct: 63 VTADRMRFDDIDLLRLSPRERRKLVGHN------VSMIFQEPQSCLDPSERVGRQLIQNI 116
Query: 189 GFLLYENS-----KMRDEQISELVKENLAAVGLKGVEDRL---PSELSGGMKKRVALARS 240
Y+ R + EL L VG+K +D + P EL+ G ++V +A +
Sbjct: 117 PAWTYKGRWWQRFGWRKRRAIEL----LHRVGIKDHKDIMRSYPYELTEGECQKVMIAIA 172
Query: 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVT 300
+ + +P +L+ DEPT ++P + L+ + N + + ++++
Sbjct: 173 L-------ANQPRLLIADEPTNSMEPTTQAQIFRLLSRL---------NQNSNTTILLIS 216
Query: 301 HQHSTIRRAVDRL 313
H I + D++
Sbjct: 217 HDLQMISQWADKI 229
|
Length = 330 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (129), Expect = 9e-08
Identities = 43/145 (29%), Positives = 69/145 (47%), Gaps = 18/145 (12%)
Query: 77 NVNTLFEPEDDGDVLIDCRNV--------YKSFGEKHILRGVSFKIRHGEAVGIIGPSGT 128
N L E DDG L D + + Y + + I + ++F + G+ +G SG
Sbjct: 363 NRKPLVENNDDGKKLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGC 422
Query: 129 GKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRE 186
GKSTILK+I L P +G++ I + D + R IG+V Q LF S +++
Sbjct: 423 GKSTILKLIERLYDPTEGDIIINDSHN---LKDINLKWWRSKIGVVSQDPLLF-SNSIKN 478
Query: 187 NVGFLLYENSKMRD-EQISELVKEN 210
N+ + LY ++D E +S E+
Sbjct: 479 NIKYSLYS---LKDLEALSNYYNED 500
|
Length = 1466 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 3e-07
Identities = 19/62 (30%), Positives = 38/62 (61%)
Query: 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE 147
G ++ + NV K +++ S +++ G+ + +IGP+G GK+T+LK++ G L D G
Sbjct: 316 GKIVFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGR 375
Query: 148 VY 149
++
Sbjct: 376 IH 377
|
Length = 635 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 3e-07
Identities = 49/187 (26%), Positives = 78/187 (41%), Gaps = 28/187 (14%)
Query: 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE 162
IL+ + I+ GE ++G G+G ST+LK IA D + + G I+ E
Sbjct: 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNT--DGFHIGVEGVITYDGITPE 130
Query: 163 EISGLRIGLVFQSAAL---FDSLTVRENVGF--------LLYENSKMRDEQISELVKENL 211
EI G V +A F LTV E + F + R+E + +
Sbjct: 131 EIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVS-REEYAKHIADVYM 189
Query: 212 AAVGLK-----GVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDP 266
A GL V + +SGG +KRV++A + + ++ +D T GLD
Sbjct: 190 ATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASL-------GGAKIQCWDNATRGLD- 241
Query: 267 IASTVVE 273
++T +E
Sbjct: 242 -SATALE 247
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 3e-07
Identities = 53/214 (24%), Positives = 94/214 (43%), Gaps = 50/214 (23%)
Query: 102 GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD 161
L G++F I G V ++G G GKS++L + + +G V+++G
Sbjct: 649 DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG--------- 699
Query: 162 EEISGLRIGLVFQSAALFDSLTVRENV--GFLLYENSKMRDEQISELVKE-------NLA 212
+ V Q A + + ++REN+ G L E + + L+ + +
Sbjct: 700 ------SVAYVPQQAWI-QNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRT 752
Query: 213 AVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDP-IASTV 271
+G KGV LSGG K+RV+LAR++ + ++ L+D+P + +D + +
Sbjct: 753 EIGEKGV------NLSGGQKQRVSLARAVYSNA-------DIYLFDDPLSAVDAHVGKHI 799
Query: 272 VEDLIRSVHKKGENG-LANPGNIASYVVVTHQHS 304
E +I G G L N + ++VTH S
Sbjct: 800 FEHVI------GPEGVLKN----KTRILVTHGIS 823
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 3e-07
Identities = 55/218 (25%), Positives = 94/218 (43%), Gaps = 24/218 (11%)
Query: 75 SENVNTLFEPEDDGDVLIDCRNVYKSF-----GEKHILRGVSFKIRHGEAVGIIGPSGTG 129
S+ N L D I+ ++V+ + E L + +I G+ V I+G +G G
Sbjct: 321 SDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCG 380
Query: 130 KSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVREN 187
KST+ K+ GL P +GE+ + G +S + R +F LFD L
Sbjct: 381 KSTLAKLFCGLYIPQEGEILLDGAA----VSADSRDDYRDLFSAIFADFHLFDDL----- 431
Query: 188 VGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247
+G E++ + + Q E V ++ + LS G +KR+AL + + D
Sbjct: 432 IGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRP- 490
Query: 248 ESVEPEVLLYDEPTAGLDPIASTVV-EDLIRSVHKKGE 284
+LL+DE A DP E+L+ + ++G+
Sbjct: 491 ------ILLFDEWAADQDPAFKRFFYEELLPDLKRQGK 522
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 5e-07
Identities = 17/35 (48%), Positives = 28/35 (80%)
Query: 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL 140
+L+ +SF+I+ G+ + I GPSGTGKS++ + +AGL
Sbjct: 16 LLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGL 50
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 7e-07
Identities = 45/202 (22%), Positives = 86/202 (42%), Gaps = 39/202 (19%)
Query: 82 FEPEDDGDVLIDCRNVYKSFGEKHILRG-VSFKIRHGEAVGIIGPSGTGKSTILKIIAGL 140
+ P G+V + + + LR +SF +R GE VG+ G G G+S ++K++ G
Sbjct: 248 YRPRPLGEVRLRLDGL-----KGPGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGA 302
Query: 141 LAPDKGEVYIRGRKRAGLISDEEISGLRIGLVF-----QSAALFDSLTVRENV------- 188
G+VY+ G+ + +R G++ ++ + +V +N+
Sbjct: 303 TRRTAGQVYLDGKP---IDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRH 359
Query: 189 ----GFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-SELSGGMKKRVALARSIIF 243
G L+ + +E + ++ +K LSGG +++ L R +
Sbjct: 360 HLRAGCLI------NNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWL-- 411
Query: 244 DNTKESVEPEVLLYDEPTAGLD 265
S + +V+L DEPT G+D
Sbjct: 412 -----SEDMKVILLDEPTRGID 428
|
Length = 501 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 1e-06
Identities = 54/185 (29%), Positives = 91/185 (49%), Gaps = 33/185 (17%)
Query: 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165
+L G+SF+I E VGI+G +G GKS++L + ++ ++G + I G IS +
Sbjct: 1254 VLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCD----ISKFGLM 1309
Query: 166 GLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL 223
LR +G++ Q+ LF S TVR F L ++ D + E+L LK V R
Sbjct: 1310 DLRKVLGIIPQAPVLF-SGTVR----FNLDPFNEHNDADLW----ESLERAHLKDVIRRN 1360
Query: 224 PSEL-----------SGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVV 272
L S G ++ ++LAR+++ + S ++L+ DE TA +D ++
Sbjct: 1361 SLGLDAEVSEAGENFSVGQRQLLSLARALL----RRS---KILVLDEATAAVDVRTDALI 1413
Query: 273 EDLIR 277
+ IR
Sbjct: 1414 QKTIR 1418
|
Length = 1622 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (119), Expect = 2e-06
Identities = 59/232 (25%), Positives = 107/232 (46%), Gaps = 52/232 (22%)
Query: 84 PEDDGDVLIDCRNVYKSFG---EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL 140
P G I +N Y S+ K L ++ +I G V I+G +G GK++++ + G
Sbjct: 607 PLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGE 666
Query: 141 LAP-DKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGF-LLYENSKM 198
L+ + V IRG + V Q + +F++ TVREN+ F +E+ +
Sbjct: 667 LSHAETSSVVIRG---------------SVAYVPQVSWIFNA-TVRENILFGSDFESERY 710
Query: 199 -RDEQISELVKE-------NLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250
R ++ L + +L +G +GV +SGG K+RV++AR+ ++ N+
Sbjct: 711 WRAIDVTALQHDLDLLPGRDLTEIGERGV------NISGGQKQRVSMARA-VYSNS---- 759
Query: 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQ 302
++ ++D+P + LD + V + S K G + V+VT+Q
Sbjct: 760 --DIYIFDDPLSALD---AHVAHQVFDSCMKDELKG-------KTRVLVTNQ 799
|
Length = 1495 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 3e-06
Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 31/142 (21%)
Query: 111 SFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170
SF++ G + I GP+G GKS++ +I+ L G + + + + L
Sbjct: 472 SFEVPSGNNLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLG-- 529
Query: 171 LVFQSAALFDSLTVRENVGFLLYENS----KMRD------EQISELVK-ENLAA--VGLK 217
T+R+ + +Y +S K R EQI + V+ ++ G
Sbjct: 530 ------------TLRDQI---IYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWS 574
Query: 218 GVEDRLPSELSGGMKKRVALAR 239
V+D + LSGG K+R+A+AR
Sbjct: 575 AVQDWM-DVLSGGEKQRIAMAR 595
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 4e-06
Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 33/186 (17%)
Query: 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165
+LR ++ I GE VGI+G +G GKS++ + + +GE+ I G I+ +
Sbjct: 1301 VLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLN----IAKIGLH 1356
Query: 166 GLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL 223
LR I ++ Q LF S ++R N L S+ DE+ V L LK L
Sbjct: 1357 DLRFKITIIPQDPVLF-SGSLRMN----LDPFSQYSDEE----VWWALELAHLKTFVSAL 1407
Query: 224 PSE-----------LSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVV 272
P + LS G ++ V LAR+++ + ++L+ DE TA +D ++
Sbjct: 1408 PDKLDHECAEGGENLSVGQRQLVCLARALL-------RKTKILVLDEATAAVDLETDNLI 1460
Query: 273 EDLIRS 278
+ IR+
Sbjct: 1461 QSTIRT 1466
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 5e-06
Identities = 45/179 (25%), Positives = 85/179 (47%), Gaps = 21/179 (11%)
Query: 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165
+L G+SF + E VG++G +G GKS++L + ++ +KG + I ++ ++
Sbjct: 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCD----VAKFGLT 1306
Query: 166 GLR--IGLVFQSAALFDSLTVRENVGFLLYEN-----SKMRDEQISELVKENLAAVGLKG 218
LR + ++ QS LF S TVR N+ N + I +++ N GL
Sbjct: 1307 DLRRVLSIIPQSPVLF-SGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRN--PFGLDA 1363
Query: 219 VEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIR 277
S G ++ ++LAR+++ ++L+ DE TA +D ++++ IR
Sbjct: 1364 EVSEGGENFSVGQRQLLSLARALL-------RRSKILVLDEATASVDVRTDSLIQRTIR 1415
|
Length = 1495 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 5e-06
Identities = 38/206 (18%), Positives = 67/206 (32%), Gaps = 62/206 (30%)
Query: 116 HGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQS 175
GE + I+GP G+GK+T+ + +A L P G V I E+I
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIY--------IDGEDI----------- 41
Query: 176 AALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRV 235
E + L + + SG ++ R+
Sbjct: 42 --------------------------------LEEVLDQLLLIIVGGKKASGSGELRLRL 69
Query: 236 ALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIAS 295
ALA + ++P+VL+ DE T+ LD ++ L N +
Sbjct: 70 ALALA-------RKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNL----T 118
Query: 296 YVVVTHQHSTIRRAVDRLCLFQIFGH 321
++ T+ + A+ R +
Sbjct: 119 VILTTNDEKDLGPALLRRRFDRRIVL 144
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 6e-06
Identities = 48/192 (25%), Positives = 89/192 (46%), Gaps = 27/192 (14%)
Query: 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166
+R VSF + GE +GI G G ++ I++ + G+ G + + G+K ++E I+
Sbjct: 264 IRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINH 323
Query: 167 LRIGLVFQ---SAALFDSLTVRENV----------GFLLYENSKMRDEQISELVKENLAA 213
LV + S ++ L + N L +NS+M+ + + + +
Sbjct: 324 -GFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSD-----TQWVIDS 377
Query: 214 VGLKGVEDRLP-SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVV 272
+ +K R LSGG +++V + R ++ +PE+L+ DEPT G+D A +
Sbjct: 378 MRVKTPGHRTQIGSLSGGNQQKVIIGRWLL-------TQPEILMLDEPTRGIDVGAKFEI 430
Query: 273 EDLIRSVHKKGE 284
LI + KK +
Sbjct: 431 YQLIAELAKKDK 442
|
Length = 491 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 9e-06
Identities = 42/171 (24%), Positives = 81/171 (47%), Gaps = 38/171 (22%)
Query: 159 ISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL 216
I D + LR +V Q LF+ +++ EN+ F +++ E VK +
Sbjct: 1286 ICDYNLKDLRNLFSIVSQEPMLFN-MSIYENIKF-------GKEDATREDVKRACKFAAI 1337
Query: 217 KGVEDRLPSE-----------LSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
+ LP++ LSGG K+R+A+AR+++ EP++LL DE T+ LD
Sbjct: 1338 DEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALL-------REPKILLLDEATSSLD 1390
Query: 266 PIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLF 316
+ ++E I + K + + + + H+ ++I+R+ D++ +F
Sbjct: 1391 SNSEKLIEKTIVDIKDKADK---------TIITIAHRIASIKRS-DKIVVF 1431
|
Length = 1466 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 1e-05
Identities = 69/300 (23%), Positives = 112/300 (37%), Gaps = 109/300 (36%)
Query: 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD---KGEVYIRG--------RK 154
IL+ S I+ ++GP +GK+T+L +AG L P GE+ G RK
Sbjct: 180 ILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRK 239
Query: 155 RAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLY-ENSKMRDEQISELVKEN--- 210
+ IS + + +G+ +TV+E + F + R + +SEL +
Sbjct: 240 TSAYISQND---VHVGV----------MTVKETLDFSARCQGVGTRYDLLSELARREKDA 286
Query: 211 -----------LAAVGLKGVEDRLPSE-----------------------LSGGMKKRVA 236
+ A ++GV+ L ++ +SGG KKRV
Sbjct: 287 GIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVT 346
Query: 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASY 296
I+ TK L DE + GLD +ST +Y
Sbjct: 347 TGEMIV-GPTK------TLFMDEISTGLD--SST------------------------TY 373
Query: 297 VVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIY-RLIFLYEGKIVWQG 355
+V CL QI + +++ + P E F ++ +I L EG+IV+QG
Sbjct: 374 QIVK-------------CLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQG 420
|
Length = 1470 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (110), Expect = 2e-05
Identities = 29/85 (34%), Positives = 50/85 (58%), Gaps = 16/85 (18%)
Query: 225 SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGE 284
S+LSGG K+R+++AR+II + P++L+ DE T+ LD + +V+ I ++ K E
Sbjct: 578 SKLSGGQKQRISIARAIIRN-------PKILILDEATSSLDNKSEYLVQKTINNL-KGNE 629
Query: 285 NGLANPGNIASYVVVTHQHSTIRRA 309
N + +++ H+ STIR A
Sbjct: 630 NRIT--------IIIAHRLSTIRYA 646
|
Length = 1466 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 2e-05
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 114 IRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV 148
++ GE +GI+GP+GTGK+T +KI+AG L P+
Sbjct: 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDND 56
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 2e-05
Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 33/158 (20%)
Query: 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166
L +S K G+ +G++G +G+GKST+ II G L+P G+V R G E+S
Sbjct: 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKV-----DRNG-----EVSV 89
Query: 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSKM-----RDEQISELVKENLAAVGLKGVED 221
+ I SA L LT EN+ F KM + ++I + + + L
Sbjct: 90 IAI-----SAGLSGQLTGIENIEF------KMLCMGFKRKEIKAMTPKIIEFSELGEFIY 138
Query: 222 RLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDE 259
+ + S GM+ ++ + +I +V P++L+ DE
Sbjct: 139 QPVKKYSSGMRAKLGFSINI-------TVNPDILVIDE 169
|
Length = 264 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 39/205 (19%), Positives = 66/205 (32%), Gaps = 58/205 (28%)
Query: 105 HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEI 164
H L+ + I V + G SG+GKST++ L I +
Sbjct: 9 HNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEG---LYASGKARLISFLPKF-------- 57
Query: 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP 224
N + +Q+ L+ L + L +
Sbjct: 58 ----------------------------SRNKLIFIDQLQFLIDVGLGYLTL----GQKL 85
Query: 225 SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGE 284
S LSGG +RV LA + + + DEP+ GL + L+ +
Sbjct: 86 STLSGGELQRVKLASEL-----FSEPPGTLFILDEPSTGLHQQ---DINQLLEVI----- 132
Query: 285 NGLANPGNIASYVVVTHQHSTIRRA 309
GL + GN + +++ H + A
Sbjct: 133 KGLIDLGN--TVILIEHNLDVLSSA 155
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 1e-04
Identities = 61/255 (23%), Positives = 103/255 (40%), Gaps = 60/255 (23%)
Query: 91 LIDCRNVYKSF----GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP--- 143
L+D RN+ F G + VS + GE G++G SG+GKS I K I G+
Sbjct: 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWR 62
Query: 144 ---------DKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLL-- 192
D + + R+R L+ G + ++FQ L E VG L
Sbjct: 63 VTADRMRFDDIDLLRLSPRERRKLV------GHNVSMIFQEPQ--SCLDPSERVGRQLMQ 114
Query: 193 -----------YENSKMRDEQISELVKENLAAVGLKGVEDRL---PSELSGGMKKRVALA 238
++ R + EL L VG+K +D + P EL+ G ++V +A
Sbjct: 115 NIPGWTYKGRWWQRFGWRKRRAIEL----LHRVGIKDHKDAMRSFPYELTEGECQKVMIA 170
Query: 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVV 298
I N +P +L+ DEPT ++P + L+ + N N + ++
Sbjct: 171 --IALAN-----QPRLLIADEPTNAMEPTTQAQIFRLLTRL---------NQNNNTTILL 214
Query: 299 VTHQHSTIRRAVDRL 313
++H + + D++
Sbjct: 215 ISHDLQMLSQWADKI 229
|
Length = 330 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 52/211 (24%), Positives = 95/211 (45%), Gaps = 52/211 (24%)
Query: 83 EPEDDGDVLIDCRNV---YKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAG 139
EP G+V+++ RN+ + VSF +R GE +GI G G G++ +++ + G
Sbjct: 251 EPHTIGEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFG 310
Query: 140 LLAPDK--GEVYIRG----------------------RKRAGLISDEEISGLRIGLVFQS 175
P + GE++I G RKR G++ + G I L
Sbjct: 311 AY-PGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGV-GKNITL---- 364
Query: 176 AALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-SELSGGMKKR 234
AAL D T + + ++++ + E++ + +K L + LSGG +++
Sbjct: 365 AAL-DRFTGGS----RIDDAAELKT------ILESIQRLKVKTASPELAIARLSGGNQQK 413
Query: 235 VALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
LA+ ++ + P++L+ DEPT G+D
Sbjct: 414 AVLAKCLLLN-------PKILILDEPTRGID 437
|
Length = 506 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 20/60 (33%), Positives = 33/60 (55%)
Query: 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154
N+ KSF L V+ K+R ++G +G GKST+LK + G+ D G + +G++
Sbjct: 2 SNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKE 61
|
Length = 491 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 3e-04
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166
L ++ +I G+ I+G G GKS++L I G + +G+V+ + + + S
Sbjct: 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR 76
Query: 167 LRIGLVF--QSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP 224
R + + Q L ++ TV EN+ F N K R + +++ A L+ D LP
Sbjct: 77 NRYSVAYAAQKPWLLNA-TVEENITFGSPFN-KQRYKAVTD-------ACSLQPDIDLLP 127
Query: 225 S-----------ELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
LSGG ++R+ +AR+ ++ NT ++ D+P + LD
Sbjct: 128 FGDQTEIGERGINLSGGQRQRICVARA-LYQNTN------IVFLDDPFSALD 172
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 47/186 (25%), Positives = 81/186 (43%), Gaps = 36/186 (19%)
Query: 111 SFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170
S + G++ +G +G+GKS + + +AG L GE + +S E++ L +
Sbjct: 23 SLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFS-HITRLSFEQLQKL-VS 80
Query: 171 LVFQSAALFDSLTVRENVGFLLYENSKMRD-------EQISELVKEN-----LAA-VGLK 217
+Q R N L S D E I + VK+ LA G+
Sbjct: 81 DEWQ----------RNNTDML----SPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGIT 126
Query: 218 GVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIR 277
+ DR LS G ++ L ++++ EP++L+ DEP GLD + + +L+
Sbjct: 127 ALLDRRFKYLSTGETRKTLLCQALM-------SEPDLLILDEPFDGLDVASRQQLAELLA 179
Query: 278 SVHKKG 283
S+H+ G
Sbjct: 180 SLHQSG 185
|
Length = 490 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.001
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 13/73 (17%)
Query: 199 RDEQISELVKENLAAVGLKGV------EDRLPSELSGGMKKRVALARSIIFDNTKESVEP 252
R E I E AA L G+ + + SGG + R+ALAR++ +EP
Sbjct: 311 RLELIDAYTAEARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALF-------IEP 363
Query: 253 EVLLYDEPTAGLD 265
++LL DEPT LD
Sbjct: 364 DLLLLDEPTNHLD 376
|
Length = 718 |
| >gnl|CDD|185099 PRK15177, PRK15177, Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Score = 38.5 bits (89), Expect = 0.002
Identities = 17/48 (35%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE-VYIRG 152
+L F + + E +GI+ G+GK+T+ +++ GL APD+G+ + +RG
Sbjct: 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRG 49
|
Length = 213 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 382 | |||
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 100.0 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 100.0 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 100.0 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 100.0 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 100.0 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 100.0 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 100.0 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 100.0 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.98 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.97 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.97 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.97 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.97 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.96 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.96 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.96 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.96 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.96 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.96 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.96 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.96 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.95 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.95 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.95 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.94 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.94 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.94 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.93 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.93 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 99.92 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.9 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.9 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.89 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.88 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 99.87 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.86 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.86 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 99.85 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.85 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 99.85 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.83 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 99.83 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.83 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.82 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.82 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 99.81 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.8 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 99.79 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.79 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 99.78 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 99.75 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.74 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 99.72 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 99.66 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 99.64 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 99.61 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 99.61 | |
| PRK00064 | 361 | recF recombination protein F; Reviewed | 99.58 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 99.57 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.55 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.5 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 99.48 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 99.46 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 99.44 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.42 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 99.4 | |
| TIGR00618 | 1042 | sbcc exonuclease SbcC. This family is based on the | 99.4 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 99.4 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 99.37 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 99.37 | |
| PF13304 | 303 | AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T | 99.34 | |
| cd03286 | 218 | ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS | 99.34 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 99.32 | |
| PRK13695 | 174 | putative NTPase; Provisional | 99.31 | |
| PRK10869 | 553 | recombination and repair protein; Provisional | 99.3 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 99.29 | |
| PRK06793 | 432 | fliI flagellum-specific ATP synthase; Validated | 99.27 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 99.27 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 99.26 | |
| PRK13830 | 818 | conjugal transfer protein TrbE; Provisional | 99.25 | |
| TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereu | 99.25 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 99.22 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 99.22 | |
| COG3910 | 233 | Predicted ATPase [General function prediction only | 99.2 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 99.18 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 99.1 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 99.1 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 99.0 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 98.99 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 98.96 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 98.94 | |
| PRK06002 | 450 | fliI flagellum-specific ATP synthase; Validated | 98.93 | |
| PRK07196 | 434 | fliI flagellum-specific ATP synthase; Validated | 98.89 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 98.89 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 98.88 | |
| PRK06315 | 442 | type III secretion system ATPase; Provisional | 98.87 | |
| PRK13891 | 852 | conjugal transfer protein TrbE; Provisional | 98.86 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 98.86 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 98.82 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 98.8 | |
| PRK13898 | 800 | type IV secretion system ATPase VirB4; Provisional | 98.79 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 98.73 | |
| TIGR00611 | 365 | recf recF protein. All proteins in this family for | 98.73 | |
| TIGR01026 | 440 | fliI_yscN ATPase FliI/YscN family. This family of | 98.72 | |
| PRK09825 | 176 | idnK D-gluconate kinase; Provisional | 98.72 | |
| PRK05399 | 854 | DNA mismatch repair protein MutS; Provisional | 98.64 | |
| TIGR02680 | 1353 | conserved hypothetical protein TIGR02680. Members | 98.62 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 98.58 | |
| PRK08149 | 428 | ATP synthase SpaL; Validated | 98.57 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 98.54 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 98.53 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 98.52 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 98.51 | |
| PRK13873 | 811 | conjugal transfer ATPase TrbE; Provisional | 98.5 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 98.48 | |
| PRK09862 | 506 | putative ATP-dependent protease; Provisional | 98.48 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 98.47 | |
| PRK00300 | 205 | gmk guanylate kinase; Provisional | 98.47 | |
| TIGR02322 | 179 | phosphon_PhnN phosphonate metabolism protein/1,5-b | 98.45 | |
| PRK07594 | 433 | type III secretion system ATPase SsaN; Validated | 98.45 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 98.44 | |
| PRK14079 | 349 | recF recombination protein F; Provisional | 98.44 | |
| TIGR02546 | 422 | III_secr_ATP type III secretion apparatus H+-trans | 98.44 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 98.42 | |
| cd01136 | 326 | ATPase_flagellum-secretory_path_III Flagellum-spec | 98.39 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 98.38 | |
| PRK07960 | 455 | fliI flagellum-specific ATP synthase; Validated | 98.36 | |
| TIGR00554 | 290 | panK_bact pantothenate kinase, bacterial type. Sho | 98.34 | |
| TIGR00767 | 415 | rho transcription termination factor Rho. Members | 98.32 | |
| PRK09270 | 229 | nucleoside triphosphate hydrolase domain-containin | 98.31 | |
| PRK09099 | 441 | type III secretion system ATPase; Provisional | 98.29 | |
| TIGR02524 | 358 | dot_icm_DotB Dot/Icm secretion system ATPase DotB. | 98.28 | |
| TIGR03497 | 413 | FliI_clade2 flagellar protein export ATPase FliI. | 98.24 | |
| TIGR03498 | 418 | FliI_clade3 flagellar protein export ATPase FliI. | 98.24 | |
| TIGR03496 | 411 | FliI_clade1 flagellar protein export ATPase FliI. | 98.22 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 98.21 |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-68 Score=490.26 Aligned_cols=237 Identities=38% Similarity=0.644 Sum_probs=219.2
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
++|+++||+|+||+.++|+|||++|.+||+++||||||||||||||||+||.+|++|+|+++|+++.... +....|+++
T Consensus 1 ~mi~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~-~~~~~R~~v 79 (240)
T COG1126 1 MMIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKK-DILKLRRKV 79 (240)
T ss_pred CeEEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchh-hHHHHHHhc
Confidence 4799999999999999999999999999999999999999999999999999999999999998764322 222234469
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
|+|||+++|||++||.||+.++.....++++++.++.+.++|+++||.+..+.||.+|||||||||||||||+
T Consensus 80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALa------- 152 (240)
T COG1126 80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALA------- 152 (240)
T ss_pred CeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHc-------
Confidence 9999999999999999999998876777899999999999999999999999999999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
++|+++|+|||||+|||+...++++.|++|+++| +|+|+|||+|.++.+.||||
T Consensus 153 M~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eG----------mTMivVTHEM~FAr~Vadrv---------------- 206 (240)
T COG1126 153 MDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEG----------MTMIIVTHEMGFAREVADRV---------------- 206 (240)
T ss_pred CCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcC----------CeEEEEechhHHHHHhhheE----------------
Confidence 5799999999999999999999999999999998 79999999999999999988
Q ss_pred cCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 330 AVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
+||++|+|+++|++++++ +++++.+++|++.
T Consensus 207 --------------iFmd~G~iie~g~p~~~f~~p~~~R~~~FL~~ 238 (240)
T COG1126 207 --------------IFMDQGKIIEEGPPEEFFDNPKSERTRQFLSK 238 (240)
T ss_pred --------------EEeeCCEEEEecCHHHHhcCCCCHHHHHHHHh
Confidence 999999999999999876 6788999999863
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-64 Score=473.48 Aligned_cols=247 Identities=47% Similarity=0.763 Sum_probs=231.1
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhh-hccc
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE-ISGL 167 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~-~~~~ 167 (382)
.+.|++++|+++||++.+++||||+|++||+++|+||||||||||||+|.|+++|++|+|+++|+++........ ..+.
T Consensus 6 ~~~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~ 85 (263)
T COG1127 6 EPLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRK 85 (263)
T ss_pred cceEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHh
Confidence 578999999999999999999999999999999999999999999999999999999999999999887654332 2244
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCccc-ccCCCCCCChHHHHHHHHHHHHhcCCC
Q 016804 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGV-EDRLPSELSGGMKKRVALARSIIFDNT 246 (382)
Q Consensus 168 ~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~-~~~~~~~LSGGqrQRVaIArAL~~~~~ 246 (382)
++|++||+.+||.++||+||++|+++.+...+++.+++.+..-|+.+||... .+++|++|||||++|++|||||+.
T Consensus 86 r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAial--- 162 (263)
T COG1127 86 RMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIAL--- 162 (263)
T ss_pred heeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhc---
Confidence 6999999999999999999999999999889999999999999999999876 899999999999999999999986
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchhee
Q 016804 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVI 326 (382)
Q Consensus 247 ~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~ 326 (382)
+|+||++||||+||||.+...+.++|++|++.-. .|++|||||++++..+|||+
T Consensus 163 ----dPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg---------~T~i~VTHDl~s~~~i~Drv------------- 216 (263)
T COG1127 163 ----DPELLFLDEPTSGLDPISAGVIDELIRELNDALG---------LTVIMVTHDLDSLLTIADRV------------- 216 (263)
T ss_pred ----CCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhC---------CEEEEEECChHHHHhhhceE-------------
Confidence 5999999999999999999999999999998742 59999999999999999988
Q ss_pred hhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHHcCCCCCCCC
Q 016804 327 ILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFASGSLEGPIR 381 (382)
Q Consensus 327 ~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (382)
++|.+|||+|+|+++++....+|.+++|+.|..++|+.
T Consensus 217 -----------------~~L~~gkv~~~Gt~~el~~sd~P~v~qf~~G~~~gpi~ 254 (263)
T COG1127 217 -----------------AVLADGKVIAEGTPEELLASDDPWVRQFFNGIRDGPIP 254 (263)
T ss_pred -----------------EEEeCCEEEEeCCHHHHHhCCCHHHHHHhcCCCCCcee
Confidence 99999999999999999888999999999999999875
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-62 Score=469.35 Aligned_cols=239 Identities=37% Similarity=0.593 Sum_probs=219.5
Q ss_pred eEEEEeEEEEeCC-----eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhh-
Q 016804 91 LIDCRNVYKSFGE-----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEI- 164 (382)
Q Consensus 91 ~I~~~nvs~~yg~-----~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~- 164 (382)
||++++|+|.|.. ..+|+||||+|++||++||||.||||||||+|||++|.+|++|+|.++|+++..+.....+
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 6899999999975 4699999999999999999999999999999999999999999999999998876544322
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcC
Q 016804 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFD 244 (382)
Q Consensus 165 ~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~ 244 (382)
.|++|||+||+++|+...||++||+|++.. .+++++++++++.++|+.+||+++.++||.+|||||||||+|||||+.
T Consensus 81 ~R~~IGMIFQhFnLLssrTV~~NvA~PLei-ag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~- 158 (339)
T COG1135 81 LRQKIGMIFQHFNLLSSRTVFENVAFPLEL-AGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALAN- 158 (339)
T ss_pred HHhhccEEeccccccccchHHhhhhhhHhh-cCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhc-
Confidence 344699999999999999999999999853 457889999999999999999999999999999999999999999996
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchh
Q 016804 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDV 324 (382)
Q Consensus 245 ~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~ 324 (382)
+|+|||.|||||+|||.+.+.++++|++++++-+ .||++|||.|+.++++||||
T Consensus 159 ------~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lg---------lTIvlITHEm~Vvk~ic~rV----------- 212 (339)
T COG1135 159 ------NPKILLCDEATSALDPETTQSILELLKDINRELG---------LTIVLITHEMEVVKRICDRV----------- 212 (339)
T ss_pred ------CCCEEEecCccccCChHHHHHHHHHHHHHHHHcC---------CEEEEEechHHHHHHHhhhh-----------
Confidence 6999999999999999999999999999998742 69999999999999999999
Q ss_pred eehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcCCC
Q 016804 325 VIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASGSL 376 (382)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~~~ 376 (382)
.||++|+|+++|+..+++ .++++.+++|+....
T Consensus 213 -------------------avm~~G~lvE~G~v~~vF~~Pk~~~t~~fi~~~~ 246 (339)
T COG1135 213 -------------------AVLDQGRLVEEGTVSEVFANPKHAITQEFIGETL 246 (339)
T ss_pred -------------------eEeeCCEEEEeccHHHhhcCcchHHHHHHHHhhc
Confidence 999999999999999965 678999999998654
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-62 Score=457.42 Aligned_cols=236 Identities=36% Similarity=0.561 Sum_probs=217.5
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
||+++||+|+|+++.+++++||+|++||++++||||||||||+||+|++|++|++|+|+++|+++....... + |++||
T Consensus 1 MI~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~-L-Rr~IG 78 (309)
T COG1125 1 MIEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVE-L-RRKIG 78 (309)
T ss_pred CceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHH-H-HHhhh
Confidence 689999999999999999999999999999999999999999999999999999999999999987653322 2 34799
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc--ccccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK--GVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~--~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~ 248 (382)
||-|...|||++||.|||++... ..++++++++++++|+|+.+||+ ++.+|||++|||||||||.+||||+.
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~-L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAa----- 152 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPK-LLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAA----- 152 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhh-hcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhc-----
Confidence 99999999999999999998653 45688999999999999999997 48999999999999999999999986
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehh
Q 016804 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIIL 328 (382)
Q Consensus 249 a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~ 328 (382)
+|+||||||||++|||.++..+++.+.+++++-+ +|||+||||++++.+++|||
T Consensus 153 --dP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~---------kTivfVTHDidEA~kLadri--------------- 206 (309)
T COG1125 153 --DPPILLMDEPFGALDPITRKQLQEEIKELQKELG---------KTIVFVTHDIDEALKLADRI--------------- 206 (309)
T ss_pred --CCCeEeecCCccccChhhHHHHHHHHHHHHHHhC---------CEEEEEecCHHHHHhhhceE---------------
Confidence 6999999999999999999999999999998742 69999999999999999988
Q ss_pred ccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcCC
Q 016804 329 GAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASGS 375 (382)
Q Consensus 329 ~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~~ 375 (382)
++|++|+|++.++|.++. ++.+..+.+|+..+
T Consensus 207 ---------------~vm~~G~i~Q~~~P~~il~~Pan~FV~~f~g~~ 239 (309)
T COG1125 207 ---------------AVMDAGEIVQYDTPDEILANPANDFVEDFFGES 239 (309)
T ss_pred ---------------EEecCCeEEEeCCHHHHHhCccHHHHHHHhccc
Confidence 999999999999999975 67899999999865
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-61 Score=478.27 Aligned_cols=235 Identities=37% Similarity=0.609 Sum_probs=216.5
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
+.|+++||+|+||+..+|+|+||+|++||+++|+||||||||||||+|+||+.|++|+|.++|+++..+.. .++.|
T Consensus 4 ~~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp----~kR~i 79 (352)
T COG3842 4 PALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPP----EKRPI 79 (352)
T ss_pred ceEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh----hhccc
Confidence 56999999999999999999999999999999999999999999999999999999999999999987532 23469
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
|+|||+++|||+|||+|||+|++...+...++++++++.++|+.++|+++.+|+|++|||||||||||||||+.
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~------ 153 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVP------ 153 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhc------
Confidence 99999999999999999999999744445567788999999999999999999999999999999999999996
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
+|++||||||+|+||...+.+++..++++.++-+ +|.|+||||.+++..++|||
T Consensus 154 -~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~g---------iT~i~VTHDqeEAl~msDrI---------------- 207 (352)
T COG3842 154 -EPKVLLLDEPLSALDAKLREQMRKELKELQRELG---------ITFVYVTHDQEEALAMSDRI---------------- 207 (352)
T ss_pred -CcchhhhcCcccchhHHHHHHHHHHHHHHHHhcC---------CeEEEEECCHHHHhhhccce----------------
Confidence 6999999999999999999999999999987732 69999999999999999988
Q ss_pred cCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 330 AVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
++|++|+|.+.|+|+|+. .+.+..+.+|+..
T Consensus 208 --------------~Vm~~G~I~Q~gtP~eiY~~P~~~fVA~FiG~ 239 (352)
T COG3842 208 --------------AVMNDGRIEQVGTPEEIYERPATRFVADFIGE 239 (352)
T ss_pred --------------EEccCCceeecCCHHHHhhCcchHHHHHHhCc
Confidence 999999999999999975 5778888888863
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-59 Score=463.71 Aligned_cols=232 Identities=36% Similarity=0.582 Sum_probs=214.8
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
+|+++||+|+||+..+|+++||+|+.||+++|+||||||||||||+|+||++|++|+|+|+|+++..+.+. ++.|+
T Consensus 3 ~i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~----~R~ia 78 (338)
T COG3839 3 ELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPE----KRGIA 78 (338)
T ss_pred EEEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh----HCCEE
Confidence 58999999999976699999999999999999999999999999999999999999999999998775332 34699
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
||||+++|||+|||+||++|++. ..+.++++++++++++++.++|+++++++|.+|||||||||||||||++
T Consensus 79 mVFQ~yALyPhmtV~~Niaf~Lk-~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr------- 150 (338)
T COG3839 79 MVFQNYALYPHMTVYENIAFGLK-LRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVR------- 150 (338)
T ss_pred EEeCCccccCCCcHHHHhhhhhh-hCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhc-------
Confidence 99999999999999999999985 3456788999999999999999999999999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhcc
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGA 330 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~ 330 (382)
+|+++|||||+|+||...+..+...|++++++-+ .|+|+||||..++..++|||
T Consensus 151 ~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~---------~T~IYVTHDq~EAmtladri----------------- 204 (338)
T COG3839 151 KPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLG---------TTTIYVTHDQVEAMTLADRI----------------- 204 (338)
T ss_pred CCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcC---------CcEEEEcCCHHHHHhhCCEE-----------------
Confidence 6999999999999999999999999999998742 69999999999999999988
Q ss_pred CCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHc
Q 016804 331 VAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFAS 373 (382)
Q Consensus 331 ~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~ 373 (382)
++|++|+|.+.|+|.|+. .+.+..+..|+.
T Consensus 205 -------------~Vm~~G~i~Q~g~p~ely~~P~n~fVA~FiG 235 (338)
T COG3839 205 -------------VVMNDGRIQQVGTPLELYERPANLFVAGFIG 235 (338)
T ss_pred -------------EEEeCCeeeecCChHHHhhCccchhhhhhcC
Confidence 999999999999999976 677888888876
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-59 Score=443.37 Aligned_cols=220 Identities=38% Similarity=0.594 Sum_probs=193.5
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
.++++++|+++|++..+|+|+||+|++||+++||||||||||||||+|+||.+|++|+|.++|+.+... ...+
T Consensus 2 ~~l~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-------~~~~ 74 (248)
T COG1116 2 ALLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-------GPDI 74 (248)
T ss_pred ceEEEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-------CCCE
Confidence 358999999999999999999999999999999999999999999999999999999999999886321 2259
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
|||||++.|||.+||+|||.+++... +.+.++..++++++|+.+||.++.+++|++|||||||||+|||||+.
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~-~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~------ 147 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELR-GKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALAT------ 147 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhcc-ccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhc------
Confidence 99999999999999999999988532 34566667789999999999999999999999999999999999996
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccc-cccchheehh
Q 016804 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQI-FGHIDVVIIL 328 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~-~~~~~~~~~~ 328 (382)
+|+||||||||++||..++..+++.+.++.++.+ .|+++||||++++..++|||++|.. +|+|..++-|
T Consensus 148 -~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~---------~TvllVTHdi~EAv~LsdRivvl~~~P~~i~~~~~i 217 (248)
T COG1116 148 -RPKLLLLDEPFGALDALTREELQDELLRLWEETR---------KTVLLVTHDVDEAVYLADRVVVLSNRPGRIGEELEI 217 (248)
T ss_pred -CCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhC---------CEEEEEeCCHHHHHhhhCEEEEecCCCcceeeEEec
Confidence 6999999999999999999999999999987642 5999999999999999999955543 2555555555
Q ss_pred ccCCC
Q 016804 329 GAVAP 333 (382)
Q Consensus 329 ~~~~~ 333 (382)
...+|
T Consensus 218 ~l~rp 222 (248)
T COG1116 218 DLPRP 222 (248)
T ss_pred CCCCC
Confidence 55444
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-58 Score=439.35 Aligned_cols=233 Identities=37% Similarity=0.551 Sum_probs=205.9
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
+++++||+++|+++++|+|+||+|++||+++|+||||||||||||+|+|+++|.+|+|+++|+++..+.. .+.++ ++|
T Consensus 2 ~L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~-kelAk-~ia 79 (258)
T COG1120 2 MLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSP-KELAK-KLA 79 (258)
T ss_pred eeEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCH-HHHhh-hEE
Confidence 6899999999999999999999999999999999999999999999999999999999999999887643 33333 699
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCC---CHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKM---RDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~---~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~ 247 (382)
||||.+...+.+||+|-+.++.+.+.++ ..++.++.+.++|+.+|+.++.+|...+|||||||||.|||||++
T Consensus 80 ~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ---- 155 (258)
T COG1120 80 YVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQ---- 155 (258)
T ss_pred EeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhc----
Confidence 9999987777799999999987654322 234445578999999999999999999999999999999999998
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheeh
Q 016804 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVII 327 (382)
Q Consensus 248 ~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~ 327 (382)
+|++|||||||++||..++.++++++++++++.+ +|+|+|+||++.+.++||++
T Consensus 156 ---~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~---------~tvv~vlHDlN~A~ryad~~-------------- 209 (258)
T COG1120 156 ---ETPILLLDEPTSHLDIAHQIEVLELLRDLNREKG---------LTVVMVLHDLNLAARYADHL-------------- 209 (258)
T ss_pred ---CCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcC---------CEEEEEecCHHHHHHhCCEE--------------
Confidence 6999999999999999999999999999996621 69999999999999999988
Q ss_pred hccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHHc
Q 016804 328 LGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFAS 373 (382)
Q Consensus 328 ~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 373 (382)
++|++|+++++|+|+++.++ +.+.+.+.
T Consensus 210 ----------------i~lk~G~i~a~G~p~evlT~--e~l~~Vyg 237 (258)
T COG1120 210 ----------------ILLKDGKIVAQGTPEEVLTE--ENLREVYG 237 (258)
T ss_pred ----------------EEEECCeEEeecCcchhcCH--HHHHHHhC
Confidence 99999999999999998753 34444443
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-58 Score=423.72 Aligned_cols=238 Identities=31% Similarity=0.508 Sum_probs=213.2
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCc-----cEEEECCEECCCCCChhh
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDK-----GEVYIRGRKRAGLISDEE 163 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~s-----G~I~i~G~~i~~~~~~~~ 163 (382)
.+.++++||++.||++++|+|||++|++++++|||||||||||||||++.++.+... |+|.++|+++.....+..
T Consensus 5 ~~~~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~ 84 (253)
T COG1117 5 IPAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVV 84 (253)
T ss_pred cceeEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHH
Confidence 356999999999999999999999999999999999999999999999999988764 999999999876432322
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc----ccccCCCCCCChHHHHHHHHHH
Q 016804 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALAR 239 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~----~~~~~~~~~LSGGqrQRVaIAr 239 (382)
.-|++||+|||.|+.|| +|++|||+|+...+...+ ++.++.++..|+.+.|. +.+++.+..||||||||++|||
T Consensus 85 ~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~-~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIAR 162 (253)
T COG1117 85 ELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKD-KELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIAR 162 (253)
T ss_pred HHHHHheeeccCCCCCC-chHHHHHHHhHHhhccch-HHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHH
Confidence 23457999999999999 899999999987665444 78899999999999995 4667788999999999999999
Q ss_pred HHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccc
Q 016804 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIF 319 (382)
Q Consensus 240 AL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~ 319 (382)
||+- +|+|||||||||+|||.+...+.++|.+|+++ -|||+|||+|..+.+++|+.
T Consensus 163 alAv-------~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~-----------yTIviVTHnmqQAaRvSD~t------ 218 (253)
T COG1117 163 ALAV-------KPEVLLMDEPTSALDPISTLKIEELITELKKK-----------YTIVIVTHNMQQAARVSDYT------ 218 (253)
T ss_pred HHhc-------CCcEEEecCcccccCchhHHHHHHHHHHHHhc-----------cEEEEEeCCHHHHHHHhHhh------
Confidence 9985 79999999999999999999999999999876 49999999999999999999
Q ss_pred ccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcCCC
Q 016804 320 GHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASGSL 376 (382)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~~~ 376 (382)
+|+..|++++.|.+++++ ++++..+.+++.|..
T Consensus 219 ------------------------aFf~~G~LvE~g~T~~iF~~P~~~~TedYisGrf 252 (253)
T COG1117 219 ------------------------AFFYLGELVEFGPTDKIFTNPKHKRTEDYISGRF 252 (253)
T ss_pred ------------------------hhhcccEEEEEcCHHhhhcCccHHHHHHHhccCC
Confidence 899999999999999965 678899999999864
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-57 Score=438.10 Aligned_cols=234 Identities=38% Similarity=0.609 Sum_probs=210.0
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCE---ECCCCCChhhhcc
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGR---KRAGLISDEEISG 166 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~---~i~~~~~~~~~~~ 166 (382)
++|+++|++|.|+...+++||||+|+.||.+||+||||||||||||+|+||+.|++|.|.++|+ |... ...+.
T Consensus 1 m~i~i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~----~~~~~ 76 (345)
T COG1118 1 MSIRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSN----LAVRD 76 (345)
T ss_pred CceeehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhc----cchhh
Confidence 3689999999999999999999999999999999999999999999999999999999999999 5432 12233
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhHhhcC-CCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCC
Q 016804 167 LRIGLVFQSAALFDSLTVRENVGFLLYENS-KMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (382)
Q Consensus 167 ~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~-~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~ 245 (382)
++||||||++.||++|||.+||+|++...+ ..++.+++.++.++|+.+.|+++.++||.+|||||||||||||||+-
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~-- 154 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAV-- 154 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhc--
Confidence 479999999999999999999999985442 24567888999999999999999999999999999999999999985
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchhe
Q 016804 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVV 325 (382)
Q Consensus 246 ~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~ 325 (382)
+|++||||||+++||...+.++..-|++++++-+ .|.++||||.+++.++||||
T Consensus 155 -----eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~---------~ttvfVTHD~eea~~ladrv------------ 208 (345)
T COG1118 155 -----EPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLG---------VTTVFVTHDQEEALELADRV------------ 208 (345)
T ss_pred -----CCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhC---------ceEEEEeCCHHHHHhhcceE------------
Confidence 7999999999999999999999999999988722 59999999999999999988
Q ss_pred ehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHc
Q 016804 326 IILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFAS 373 (382)
Q Consensus 326 ~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~ 373 (382)
++|++|+|...|++.|+. .+..+.+-.|..
T Consensus 209 ------------------vvl~~G~Ieqvg~p~ev~~~P~s~fV~~f~G 239 (345)
T COG1118 209 ------------------VVLNQGRIEQVGPPDEVYDHPASRFVARFLG 239 (345)
T ss_pred ------------------EEecCCeeeeeCCHHHHhcCCCccceecccc
Confidence 999999999999999975 456666666654
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-56 Score=418.15 Aligned_cols=205 Identities=38% Similarity=0.601 Sum_probs=179.3
Q ss_pred eEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChh--hh
Q 016804 91 LIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE--EI 164 (382)
Q Consensus 91 ~I~~~nvs~~yg~----~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~--~~ 164 (382)
+++++||+|.|+. .++|++|||+|++||+++|+|||||||||||++|.|+.+|++|+|+++|+++..+.... ..
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~ 80 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKL 80 (226)
T ss_pred CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHH
Confidence 4789999999964 37999999999999999999999999999999999999999999999999988764332 23
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCccccc-CCCCCCChHHHHHHHHHHHHhc
Q 016804 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVED-RLPSELSGGMKKRVALARSIIF 243 (382)
Q Consensus 165 ~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~-~~~~~LSGGqrQRVaIArAL~~ 243 (382)
++.+||||||+++|+|.+||.|||.+++.. .+.......+++.++++.+||.+..+ ++|.+|||||||||||||||++
T Consensus 81 R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~-~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~ 159 (226)
T COG1136 81 RRKKIGFVFQNFNLLPDLTVLENVELPLLI-AGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALIN 159 (226)
T ss_pred HHHhEEEECccCCCCCCCCHHHHHHhHHHH-cCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhc
Confidence 344699999999999999999999987743 33333356777889999999997666 8999999999999999999997
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 244 ~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|++||.||||++||..+.++++++|++++++.+ +|+||||||...+. +|||+
T Consensus 160 -------~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g---------~tii~VTHd~~lA~-~~dr~ 212 (226)
T COG1136 160 -------NPKIILADEPTGNLDSKTAKEVLELLRELNKERG---------KTIIMVTHDPELAK-YADRV 212 (226)
T ss_pred -------CCCeEEeeCccccCChHHHHHHHHHHHHHHHhcC---------CEEEEEcCCHHHHH-hCCEE
Confidence 6999999999999999999999999999987731 59999999988776 67877
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-55 Score=439.36 Aligned_cols=236 Identities=33% Similarity=0.557 Sum_probs=208.9
Q ss_pred eEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhh-hc
Q 016804 91 LIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE-IS 165 (382)
Q Consensus 91 ~I~~~nvs~~yg~----~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~-~~ 165 (382)
||+++||+|+|++ .++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++........ ..
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 5899999999952 479999999999999999999999999999999999999999999999999865432221 12
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCC
Q 016804 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (382)
Q Consensus 166 ~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~ 245 (382)
+.+|||+||++.+|+.+||+||+.+++.. .+.+..+..+++.++++.+||.++.+++|.+|||||||||+|||||+.
T Consensus 81 r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~-~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~-- 157 (343)
T TIGR02314 81 RRQIGMIFQHFNLLSSRTVFGNVALPLEL-DNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALAS-- 157 (343)
T ss_pred hcCEEEEECCccccccCcHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHh--
Confidence 34699999999999999999999987642 234556677888999999999999999999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchh
Q 016804 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDV 324 (382)
Q Consensus 246 ~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~ 324 (382)
+|++|||||||++||+.++..++++|++++++ | .|||+|||+++.+.++|||+
T Consensus 158 -----~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g----------~tiiliTH~~~~v~~~~d~v----------- 211 (343)
T TIGR02314 158 -----NPKVLLCDEATSALDPATTQSILELLKEINRRLG----------LTILLITHEMDVVKRICDCV----------- 211 (343)
T ss_pred -----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEE-----------
Confidence 69999999999999999999999999999876 5 59999999999999999988
Q ss_pred eehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 325 VIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
++|++|+|++.|++.++. .+.++.++.|+..
T Consensus 212 -------------------~vl~~G~iv~~g~~~~v~~~p~~~~~~~~~~~ 243 (343)
T TIGR02314 212 -------------------AVISNGELIEQGTVSEIFSHPKTPLAQKFIRS 243 (343)
T ss_pred -------------------EEEECCEEEEEcCHHHHHcCCCcHHHHHHHhh
Confidence 999999999999988875 4567788887754
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-56 Score=421.50 Aligned_cols=219 Identities=35% Similarity=0.570 Sum_probs=193.4
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
++|+++|++++|+++++|+||||+|++|++++||||||||||||+|+|+|+++|++|+|.++|++.... ..+.+|
T Consensus 3 ~~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~-----~~~~~I 77 (254)
T COG1121 3 PMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKR-----RKRLRI 77 (254)
T ss_pred cEEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccc-----ccCCeE
Confidence 579999999999966899999999999999999999999999999999999999999999999875331 123479
Q ss_pred EEEecCCC---CCCCCCHHHHHHhhHhhcCCC---CHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhc
Q 016804 170 GLVFQSAA---LFDSLTVRENVGFLLYENSKM---RDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIF 243 (382)
Q Consensus 170 g~V~Q~~~---l~~~lTV~eni~~~~~~~~~~---~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~ 243 (382)
|||||... -|| +||+|.+..+.+...++ ..++..+.+.++|+++|+.++.++...+|||||+|||.|||||++
T Consensus 78 gYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~ 156 (254)
T COG1121 78 GYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQ 156 (254)
T ss_pred EEcCcccccCCCCC-cCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhcc
Confidence 99999653 366 79999999986544321 123336789999999999999999999999999999999999997
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccch
Q 016804 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHID 323 (382)
Q Consensus 244 ~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~ 323 (382)
+|++|+|||||+|+|+.++..+.++|++|+++| +||+|||||++.+..++|+|
T Consensus 157 -------~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg----------~tIl~vtHDL~~v~~~~D~v---------- 209 (254)
T COG1121 157 -------NPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEG----------KTVLMVTHDLGLVMAYFDRV---------- 209 (254)
T ss_pred -------CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCcHHhHhhCCEE----------
Confidence 699999999999999999999999999999987 69999999999999999988
Q ss_pred heehhccCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 324 VVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
+.|+ ++++..|+++++.+
T Consensus 210 --------------------i~Ln-~~~~~~G~~~~~~~ 227 (254)
T COG1121 210 --------------------ICLN-RHLIASGPPEEVLT 227 (254)
T ss_pred --------------------EEEc-CeeEeccChhhccC
Confidence 7774 57889999999874
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-56 Score=415.34 Aligned_cols=226 Identities=34% Similarity=0.556 Sum_probs=202.2
Q ss_pred ceEEEEeEEEEe-CCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhh-ccc
Q 016804 90 VLIDCRNVYKSF-GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEI-SGL 167 (382)
Q Consensus 90 ~~I~~~nvs~~y-g~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~-~~~ 167 (382)
++|+++||++.| +++++|++|||+|++||+++||||||||||||||+|+|+++|++|+|.++|.++..+...... .+.
T Consensus 2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred ceEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 579999999999 788999999999999999999999999999999999999999999999999998776544321 234
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhHhhcC-------CCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHH
Q 016804 168 RIGLVFQSAALFDSLTVRENVGFLLYENS-------KMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARS 240 (382)
Q Consensus 168 ~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~-------~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArA 240 (382)
+|||+||+++|.+.+||.+|+..+...+. ++..++.+..+.++|+++|+.+.+.++..+|||||||||+||||
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARa 161 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARA 161 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHH
Confidence 69999999999999999999998753221 23334556778899999999999999999999999999999999
Q ss_pred HhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccc
Q 016804 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFG 320 (382)
Q Consensus 241 L~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~ 320 (382)
|++ +|+|||.|||+|+|||.+.+.+++.|++++++.+ .|+|+..|+++.++++|||+
T Consensus 162 L~Q-------~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g---------~Tvi~nLH~vdlA~~Y~~Ri------- 218 (258)
T COG3638 162 LVQ-------QPKIILADEPVASLDPESAKKVMDILKDINQEDG---------ITVIVNLHQVDLAKKYADRI------- 218 (258)
T ss_pred Hhc-------CCCEEecCCcccccChhhHHHHHHHHHHHHHHcC---------CEEEEEechHHHHHHHHhhh-------
Confidence 998 5999999999999999999999999999987632 69999999999999999999
Q ss_pred cchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 321 HIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
+-|++|+|+++|++.++.
T Consensus 219 -----------------------igl~~G~ivfDg~~~el~ 236 (258)
T COG3638 219 -----------------------IGLKAGRIVFDGPASELT 236 (258)
T ss_pred -----------------------eEecCCcEEEeCChhhhh
Confidence 999999999999888854
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-55 Score=414.35 Aligned_cols=236 Identities=32% Similarity=0.510 Sum_probs=207.4
Q ss_pred ceEEEEeEEEEeCCee----eeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhc
Q 016804 90 VLIDCRNVYKSFGEKH----ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~----iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~ 165 (382)
++|+++|+++.|+.+. +|++|||+|.+||++||+|+||||||||.|+|+|+.+|++|+|+++|++........ ..
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~-~~ 80 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAK-AF 80 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccch-hh
Confidence 5799999999998877 999999999999999999999999999999999999999999999998765432222 12
Q ss_pred cceEEEEecCCC--CCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHHHHHHh
Q 016804 166 GLRIGLVFQSAA--LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSII 242 (382)
Q Consensus 166 ~~~Ig~V~Q~~~--l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaIArAL~ 242 (382)
...|.+|||||+ |.|..||.+-|..++..+ +.++ .++++.++|+.+||. .+++|+|.+|||||+|||||||||+
T Consensus 81 ~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~-~~~~--~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~ 157 (252)
T COG1124 81 YRPVQMVFQDPYSSLNPRRTVGRILSEPLRPH-GLSK--SQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALI 157 (252)
T ss_pred ccceeEEecCCccccCcchhHHHHHhhhhccC-CccH--HHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhc
Confidence 235999999985 789999999998887532 2333 345589999999996 6899999999999999999999998
Q ss_pred cCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccc
Q 016804 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHI 322 (382)
Q Consensus 243 ~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~ 322 (382)
. +|++||||||||+||+..+.+++++|.+++++.. .|+|+||||+..+..+||||
T Consensus 158 ~-------~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~---------lt~l~IsHdl~~v~~~cdRi--------- 212 (252)
T COG1124 158 P-------EPKLLILDEPTSALDVSVQAQILNLLLELKKERG---------LTYLFISHDLALVEHMCDRI--------- 212 (252)
T ss_pred c-------CCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcC---------ceEEEEeCcHHHHHHHhhhe---------
Confidence 5 7999999999999999999999999999988742 59999999999999999998
Q ss_pred hheehhccCCCCcccccccEEEEEeCCeEEEEeccccccc-CCCHHHHHHHcCC
Q 016804 323 DVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFASGS 375 (382)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~~~ 375 (382)
+||++|++++.+++.++.+ +.+++++.++...
T Consensus 213 ---------------------~Vm~~G~ivE~~~~~~l~~~~~h~ytr~Ll~a~ 245 (252)
T COG1124 213 ---------------------AVMDNGQIVEIGPTEELLSHPSHPYTRELLEAV 245 (252)
T ss_pred ---------------------eeeeCCeEEEeechhhhhcCCccHHHHHHHHhh
Confidence 9999999999999988764 5899999887643
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-55 Score=411.99 Aligned_cols=232 Identities=55% Similarity=0.889 Sum_probs=200.8
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChh-hhccceEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE-EISGLRIG 170 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~-~~~~~~Ig 170 (382)
|+++||+++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++....... ...+.+|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~ 80 (235)
T cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMG 80 (235)
T ss_pred CeEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceE
Confidence 47899999999889999999999999999999999999999999999999999999999999875432110 11233699
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
|+||++.+|+.+||+||+.++.........++..+++.++++.+|+.+..++++.+|||||||||+|||||+.
T Consensus 81 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~------- 153 (235)
T cd03261 81 MLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALAL------- 153 (235)
T ss_pred EEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc-------
Confidence 9999999999899999998865322223455556778899999999988899999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
+|++|||||||+|||+.++..+.+.|+++.++ + .|||+||||++++..+|||+
T Consensus 154 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tvi~vsH~~~~~~~~~d~v---------------- 207 (235)
T cd03261 154 DPELLLYDEPTAGLDPIASGVIDDLIRSLKKELG----------LTSIMVTHDLDTAFAIADRI---------------- 207 (235)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcC----------cEEEEEecCHHHHHHhcCEE----------------
Confidence 69999999999999999999999999999874 5 59999999999999999988
Q ss_pred cCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHH
Q 016804 330 AVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQ 370 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~ 370 (382)
++|++|++++.|+++++....+++++.
T Consensus 208 --------------~~l~~G~i~~~g~~~~~~~~~~~~~~~ 234 (235)
T cd03261 208 --------------AVLYDGKIVAEGTPEELRASDDPLVRQ 234 (235)
T ss_pred --------------EEEECCeEEEecCHHHHcCCCChhhhc
Confidence 999999999999888876555555543
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-55 Score=438.60 Aligned_cols=231 Identities=33% Similarity=0.543 Sum_probs=207.3
Q ss_pred eEEEEeEEEEe-CCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 91 LIDCRNVYKSF-GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 91 ~I~~~nvs~~y-g~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
+|+++||+|+| +++.+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.... .. +++|
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~-~~---~r~i 78 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELE-PA---DRDI 78 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCC-HH---HCCE
Confidence 59999999999 7888999999999999999999999999999999999999999999999999986532 21 2369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
|||||++.+|+++||+||+.|++.. .+.+..+..+++.++++.+||+++.+++|.+|||||||||+|||||+.
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~-~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~------ 151 (356)
T PRK11650 79 AMVFQNYALYPHMSVRENMAYGLKI-RGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVR------ 151 (356)
T ss_pred EEEeCCccccCCCCHHHHHHhHHhh-cCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhc------
Confidence 9999999999999999999998643 234556667788999999999999999999999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehh
Q 016804 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIIL 328 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~ 328 (382)
+|++|||||||++||+.++..+.+.|+++.++ + +|+|+||||++++..+|||+
T Consensus 152 -~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g----------~tii~vTHd~~ea~~l~D~i--------------- 205 (356)
T PRK11650 152 -EPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLK----------TTSLYVTHDQVEAMTLADRV--------------- 205 (356)
T ss_pred -CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEE---------------
Confidence 69999999999999999999999999999876 4 59999999999999999988
Q ss_pred ccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHc
Q 016804 329 GAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFAS 373 (382)
Q Consensus 329 ~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~ 373 (382)
++|++|++++.|+++++. .+.++.+..|..
T Consensus 206 ---------------~vl~~G~i~~~g~~~~~~~~p~~~~~~~~~g 236 (356)
T PRK11650 206 ---------------VVMNGGVAEQIGTPVEVYEKPASTFVASFIG 236 (356)
T ss_pred ---------------EEEeCCEEEEECCHHHHHhCCccHHHHHHcC
Confidence 999999999999998875 455667766664
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-55 Score=436.57 Aligned_cols=232 Identities=34% Similarity=0.583 Sum_probs=209.5
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
++|+++||+|+|+++.+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.... . .+++|
T Consensus 5 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~-~---~~r~i 80 (351)
T PRK11432 5 NFVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRS-I---QQRDI 80 (351)
T ss_pred cEEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCC-H---HHCCE
Confidence 4799999999999889999999999999999999999999999999999999999999999999986432 1 23469
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
|||||++.+|+++||+||+.|++.. .+.+..+..+++.++++.+||.++.+++|.+|||||||||+|||||+.
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~-~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~------ 153 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKM-LGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALIL------ 153 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhH-cCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHc------
Confidence 9999999999999999999998743 235566677889999999999999999999999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehh
Q 016804 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIIL 328 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~ 328 (382)
+|++|||||||++||+..+.++.+.|+++.++ + .|+|+||||++++..+||||
T Consensus 154 -~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g----------~tii~vTHd~~e~~~laD~i--------------- 207 (351)
T PRK11432 154 -KPKVLLFDEPLSNLDANLRRSMREKIRELQQQFN----------ITSLYVTHDQSEAFAVSDTV--------------- 207 (351)
T ss_pred -CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEcCCHHHHHHhCCEE---------------
Confidence 69999999999999999999999999999876 4 59999999999999999988
Q ss_pred ccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHc
Q 016804 329 GAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFAS 373 (382)
Q Consensus 329 ~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~ 373 (382)
++|++|+|++.|+++++. .+.+..+..|..
T Consensus 208 ---------------~vm~~G~i~~~g~~~~~~~~p~~~~~a~~~g 238 (351)
T PRK11432 208 ---------------IVMNKGKIMQIGSPQELYRQPASRFMASFMG 238 (351)
T ss_pred ---------------EEEECCEEEEEcCHHHHHhCCCchHHHHhcC
Confidence 999999999999998875 456677777765
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-55 Score=436.27 Aligned_cols=232 Identities=36% Similarity=0.598 Sum_probs=208.6
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
++|+++||+|+|+++.+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++.... . .+++|
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~-~---~~r~i 78 (353)
T TIGR03265 3 PYLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLP-P---QKRDY 78 (353)
T ss_pred cEEEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCC-H---HHCCE
Confidence 4699999999999888999999999999999999999999999999999999999999999999876432 2 13369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
|||||++.+||++||+||+.|++.. .+.+..+..+++.++++.++|+++.+++|.+|||||||||+|||||+.
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~-~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~------ 151 (353)
T TIGR03265 79 GIVFQSYALFPNLTVADNIAYGLKN-RGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALAT------ 151 (353)
T ss_pred EEEeCCcccCCCCcHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhc------
Confidence 9999999999999999999998643 234556677889999999999999999999999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehh
Q 016804 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIIL 328 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~ 328 (382)
+|++|||||||++||+..+.++.+.|+++.++ + .|+|+||||++++..+|||+
T Consensus 152 -~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~----------~tvi~vTHd~~ea~~l~d~i--------------- 205 (353)
T TIGR03265 152 -SPGLLLLDEPLSALDARVREHLRTEIRQLQRRLG----------VTTIMVTHDQEEALSMADRI--------------- 205 (353)
T ss_pred -CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEcCCHHHHHHhCCEE---------------
Confidence 69999999999999999999999999999876 4 59999999999999999988
Q ss_pred ccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHc
Q 016804 329 GAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFAS 373 (382)
Q Consensus 329 ~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~ 373 (382)
++|++|++++.|+++++. .+.+..+.+|..
T Consensus 206 ---------------~vl~~G~i~~~g~~~~~~~~p~~~~~a~~~g 236 (353)
T TIGR03265 206 ---------------VVMNHGVIEQVGTPQEIYRHPATPFVADFVG 236 (353)
T ss_pred ---------------EEEECCEEEEEcCHHHHHhCCCCHHHHHhcC
Confidence 999999999999998875 455677776664
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-56 Score=402.53 Aligned_cols=217 Identities=39% Similarity=0.566 Sum_probs=199.0
Q ss_pred eEEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChh-hhccce
Q 016804 91 LIDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE-EISGLR 168 (382)
Q Consensus 91 ~I~~~nvs~~yg~-~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~-~~~~~~ 168 (382)
||+++||+|.|++ .++|+||||+|++||++-|+||||||||||||+|.+..+|++|+|+++|.++..+...+ ..-+++
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 6899999999964 55999999999999999999999999999999999999999999999999998764433 123457
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~ 248 (382)
||+||||..|.+++||+||++|++. ..+..+.++++++.++|+.+||.+..+..|.+|||||||||+||||+++
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~-v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~----- 154 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLR-VIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVN----- 154 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhh-ccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHcc-----
Confidence 9999999999999999999999885 3457788999999999999999999999999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehh
Q 016804 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIIL 328 (382)
Q Consensus 249 a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~ 328 (382)
+|++||.||||.+|||....++++++.++++.| +||||+|||.+.+.++--|+
T Consensus 155 --~P~vLlADEPTGNLDp~~s~~im~lfeeinr~G----------tTVl~ATHd~~lv~~~~~rv--------------- 207 (223)
T COG2884 155 --QPAVLLADEPTGNLDPDLSWEIMRLFEEINRLG----------TTVLMATHDLELVNRMRHRV--------------- 207 (223)
T ss_pred --CCCeEeecCCCCCCChHHHHHHHHHHHHHhhcC----------cEEEEEeccHHHHHhccCcE---------------
Confidence 699999999999999999999999999999988 69999999999999987666
Q ss_pred ccCCCCcccccccEEEEEeCCeEEEEe
Q 016804 329 GAVAPDKEVFFIYRLIFLYEGKIVWQG 355 (382)
Q Consensus 329 ~~~~~~~~~~~~~~ii~l~~G~i~~~g 355 (382)
+.|++|+++...
T Consensus 208 ---------------l~l~~Grl~~d~ 219 (223)
T COG2884 208 ---------------LALEDGRLVRDE 219 (223)
T ss_pred ---------------EEEeCCEEEecc
Confidence 999999998765
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-54 Score=437.22 Aligned_cols=236 Identities=33% Similarity=0.564 Sum_probs=210.8
Q ss_pred CCCcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhc
Q 016804 86 DDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165 (382)
Q Consensus 86 ~~~~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~ 165 (382)
+...++|+++||+++|+++++|+++||+|++||+++|+|||||||||||++|+|+++|++|+|+++|+++.... . .
T Consensus 9 ~~~~~~L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~-~---~ 84 (375)
T PRK09452 9 SSLSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVP-A---E 84 (375)
T ss_pred ccCCceEEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC-H---H
Confidence 34456799999999999889999999999999999999999999999999999999999999999999976432 1 1
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCC
Q 016804 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (382)
Q Consensus 166 ~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~ 245 (382)
+++||||||++.+||++||+||+.|++.. .+.+..+.++++.++++.++|+++.+++|.+|||||||||+|||||+.
T Consensus 85 ~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~-- 161 (375)
T PRK09452 85 NRHVNTVFQSYALFPHMTVFENVAFGLRM-QKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVN-- 161 (375)
T ss_pred HCCEEEEecCcccCCCCCHHHHHHHHHhh-cCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhc--
Confidence 23699999999999999999999998642 234556667788999999999999999999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchh
Q 016804 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDV 324 (382)
Q Consensus 246 ~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~ 324 (382)
+|++|||||||++||+..+..+.+.|+++.++ + .|+|+||||++++..+|||+
T Consensus 162 -----~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g----------~tiI~vTHd~~ea~~laDri----------- 215 (375)
T PRK09452 162 -----KPKVLLLDESLSALDYKLRKQMQNELKALQRKLG----------ITFVFVTHDQEEALTMSDRI----------- 215 (375)
T ss_pred -----CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEE-----------
Confidence 69999999999999999999999999999876 4 59999999999999999988
Q ss_pred eehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHc
Q 016804 325 VIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFAS 373 (382)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~ 373 (382)
++|++|+|++.|+++++. .+.+..+.+|..
T Consensus 216 -------------------~vl~~G~i~~~g~~~~i~~~p~~~~~a~~~g 246 (375)
T PRK09452 216 -------------------VVMRDGRIEQDGTPREIYEEPKNLFVARFIG 246 (375)
T ss_pred -------------------EEEECCEEEEEcCHHHHHhCcccHHHHHhcC
Confidence 999999999999988875 456677777665
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-54 Score=432.87 Aligned_cols=230 Identities=32% Similarity=0.537 Sum_probs=207.1
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCc--cEEEECCEECCCCCChhhhccceE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDK--GEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~s--G~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
|+++||+|+|+++.+|+|+||+|++||+++|+|||||||||||++|+|+++|++ |+|+++|+++.... . .+++|
T Consensus 6 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~-~---~~r~i 81 (362)
T TIGR03258 6 IRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAP-P---HKRGL 81 (362)
T ss_pred EEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCC-H---HHCCE
Confidence 899999999998889999999999999999999999999999999999999999 99999999875432 1 12369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
|||||++.+|+++||+||+.|++... +.+..+..+++.++++.++|+++.+++|.+|||||||||+|||||+.
T Consensus 82 g~vfQ~~~l~p~~tv~enl~~~l~~~-~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~------ 154 (362)
T TIGR03258 82 ALLFQNYALFPHLKVEDNVAFGLRAQ-KMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAI------ 154 (362)
T ss_pred EEEECCcccCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhc------
Confidence 99999999999999999999987432 35566677789999999999999999999999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc--CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheeh
Q 016804 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK--GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVII 327 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~--g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~ 327 (382)
+|++|||||||++||+..+.++.+.|+++.++ | .|+|+||||++++..+||||
T Consensus 155 -~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g----------~til~vTHd~~ea~~l~dri-------------- 209 (362)
T TIGR03258 155 -EPDVLLLDEPLSALDANIRANMREEIAALHEELPE----------LTILCVTHDQDDALTLADKA-------------- 209 (362)
T ss_pred -CCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCC----------CEEEEEeCCHHHHHHhCCEE--------------
Confidence 69999999999999999999999999999876 4 59999999999999999988
Q ss_pred hccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHc
Q 016804 328 LGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFAS 373 (382)
Q Consensus 328 ~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~ 373 (382)
++|++|++++.|+++++. .+.+..+..|..
T Consensus 210 ----------------~vl~~G~i~~~g~~~~~~~~p~~~~~a~~~g 240 (362)
T TIGR03258 210 ----------------GIMKDGRLAAHGEPQALYDAPADGFAAEFLG 240 (362)
T ss_pred ----------------EEEECCEEEEEcCHHHHHhCcCcHHHHHhhC
Confidence 999999999999999875 445666766665
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-54 Score=430.58 Aligned_cols=232 Identities=34% Similarity=0.567 Sum_probs=207.1
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
+|+++||+++|+++++|+++||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.... . .+++||
T Consensus 2 ~L~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~-~---~~r~i~ 77 (353)
T PRK10851 2 SIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLH-A---RDRKVG 77 (353)
T ss_pred EEEEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC-H---HHCCEE
Confidence 589999999999889999999999999999999999999999999999999999999999999975431 1 223699
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhc---CCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYEN---SKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~---~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~ 247 (382)
||||++.+|+++||+||+.|++... ...+.++..+++.++++.++|.++.+++|.+|||||||||+|||||+.
T Consensus 78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~---- 153 (353)
T PRK10851 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAV---- 153 (353)
T ss_pred EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhc----
Confidence 9999999999999999999976421 123455667789999999999999999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchhee
Q 016804 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVI 326 (382)
Q Consensus 248 ~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~ 326 (382)
+|++|||||||++||+.++..+.+.|+++.++ + +|+|+||||++++..+||||
T Consensus 154 ---~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g----------~tii~vTHd~~ea~~~~Dri------------- 207 (353)
T PRK10851 154 ---EPQILLLDEPFGALDAQVRKELRRWLRQLHEELK----------FTSVFVTHDQEEAMEVADRV------------- 207 (353)
T ss_pred ---CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEE-------------
Confidence 69999999999999999999999999999876 4 59999999999999999988
Q ss_pred hhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHc
Q 016804 327 ILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFAS 373 (382)
Q Consensus 327 ~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~ 373 (382)
++|++|+|++.|+++++. .+.++.+..|..
T Consensus 208 -----------------~vl~~G~i~~~g~~~~i~~~p~~~~~~~~~g 238 (353)
T PRK10851 208 -----------------VVMSQGNIEQAGTPDQVWREPATRFVLEFMG 238 (353)
T ss_pred -----------------EEEECCEEEEEcCHHHHHhCccchHHHHhcC
Confidence 999999999999988875 456677777654
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-54 Score=410.35 Aligned_cols=224 Identities=40% Similarity=0.621 Sum_probs=200.7
Q ss_pred ceEEEEeEEEEeCCe-eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 90 VLIDCRNVYKSFGEK-HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~-~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
++++++|++++|++. .+|+++||+|++||+++|+||||||||||+++++|+++|++|+|.++|.++........ .+.+
T Consensus 2 ~~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~-~~~~ 80 (235)
T COG1122 2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLE-LRQK 80 (235)
T ss_pred ceEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHH-hhcc
Confidence 478999999999765 89999999999999999999999999999999999999999999999998642111122 2346
Q ss_pred EEEEecCC--CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCC
Q 016804 169 IGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT 246 (382)
Q Consensus 169 Ig~V~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~ 246 (382)
||||||+| .+|. -||++.++|++. +.+.+++++++++.++++.+|+.+++++.|.+|||||||||+||.+|+.
T Consensus 81 vG~VfQnpd~q~~~-~tV~~evafg~~-n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~--- 155 (235)
T COG1122 81 VGLVFQNPDDQLFG-PTVEDEVAFGLE-NLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAM--- 155 (235)
T ss_pred eEEEEECccccccc-CcHHHHHhhchh-hcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHc---
Confidence 99999998 4564 699999999984 4557777899999999999999999999999999999999999999985
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchhee
Q 016804 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVI 326 (382)
Q Consensus 247 ~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~ 326 (382)
+|++||||||||+||+.+++++++++++|+++++ +|+|++|||++++..+|||+
T Consensus 156 ----~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~---------~tii~~tHd~~~~~~~ad~v------------- 209 (235)
T COG1122 156 ----GPEILLLDEPTAGLDPKGRRELLELLKKLKEEGG---------KTIIIVTHDLELVLEYADRV------------- 209 (235)
T ss_pred ----CCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCC---------CeEEEEeCcHHHHHhhCCEE-------------
Confidence 7999999999999999999999999999998842 69999999999999999988
Q ss_pred hhccCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 327 ILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 327 ~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|+++.+|++.+++.
T Consensus 210 -----------------~vl~~G~i~~~g~p~~i~~ 228 (235)
T COG1122 210 -----------------VVLDDGKILADGDPAEIFN 228 (235)
T ss_pred -----------------EEEECCEEeecCCHHHHhh
Confidence 9999999999999888764
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-53 Score=430.19 Aligned_cols=234 Identities=32% Similarity=0.511 Sum_probs=208.3
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
.++|+++|++|+|++..+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.... . .+++
T Consensus 17 ~~~l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~-~---~~r~ 92 (377)
T PRK11607 17 TPLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVP-P---YQRP 92 (377)
T ss_pred CceEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC-H---HHCC
Confidence 45799999999999888999999999999999999999999999999999999999999999999875432 1 2336
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~ 248 (382)
||||||++.+|+++||+||+.|++... +.+..+..+++.++++.++|.++.+++|.+|||||||||+|||||+.
T Consensus 93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~-~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~----- 166 (377)
T PRK11607 93 INMMFQSYALFPHMTVEQNIAFGLKQD-KLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAK----- 166 (377)
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc-----
Confidence 999999999999999999999986432 34556677889999999999999999999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehh
Q 016804 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIIL 328 (382)
Q Consensus 249 a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~ 328 (382)
+|++|||||||++||+..+..+.+.|+++.++.+ .|+|+||||++++..+|||+
T Consensus 167 --~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g---------~tii~vTHd~~ea~~laDri--------------- 220 (377)
T PRK11607 167 --RPKLLLLDEPMGALDKKLRDRMQLEVVDILERVG---------VTCVMVTHDQEEAMTMAGRI--------------- 220 (377)
T ss_pred --CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC---------CEEEEEcCCHHHHHHhCCEE---------------
Confidence 6999999999999999999999999999876521 59999999999999999988
Q ss_pred ccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHc
Q 016804 329 GAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFAS 373 (382)
Q Consensus 329 ~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~ 373 (382)
++|++|++++.|+++++. .+.+..+.+|..
T Consensus 221 ---------------~vl~~G~i~~~g~~~~~~~~p~~~~~a~~~g 251 (377)
T PRK11607 221 ---------------AIMNRGKFVQIGEPEEIYEHPTTRYSAEFIG 251 (377)
T ss_pred ---------------EEEeCCEEEEEcCHHHHHhCCccHHHHHhcC
Confidence 999999999999998875 455666666654
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-55 Score=421.09 Aligned_cols=237 Identities=37% Similarity=0.587 Sum_probs=216.4
Q ss_pred eEEEEeEEEEeCCe------------------------eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc
Q 016804 91 LIDCRNVYKSFGEK------------------------HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG 146 (382)
Q Consensus 91 ~I~~~nvs~~yg~~------------------------~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG 146 (382)
.|+++||+|-||.+ .-++|+||+|++||++.|+|=||||||||+|+|++|++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 48899999999742 248999999999999999999999999999999999999999
Q ss_pred EEEECCEECCCCCChh--hhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC
Q 016804 147 EVYIRGRKRAGLISDE--EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP 224 (382)
Q Consensus 147 ~I~i~G~~i~~~~~~~--~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~ 224 (382)
+|+++|+++....... +.++.++++|||+..|+|+.||.||+.|++ ...+.++++.++++.++|+.+||+++.++||
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGL-ev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp 162 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGL-EVQGVPKAEREERALEALELVGLEGYADKYP 162 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcce-eecCCCHHHHHHHHHHHHHHcCchhhhhcCc
Confidence 9999999998764333 234456999999999999999999999998 4567888899999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHH
Q 016804 225 SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS 304 (382)
Q Consensus 225 ~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~ 304 (382)
++|||||||||.|||||+. +|+|||+|||||+|||--+.++++.|.+|.++-+ +|||+||||++
T Consensus 163 ~eLSGGMqQRVGLARAla~-------~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~---------KTIvFitHDLd 226 (386)
T COG4175 163 NELSGGMQQRVGLARALAN-------DPDILLMDEAFSALDPLIRTEMQDELLELQAKLK---------KTIVFITHDLD 226 (386)
T ss_pred ccccchHHHHHHHHHHHcc-------CCCEEEecCchhhcChHHHHHHHHHHHHHHHHhC---------CeEEEEecCHH
Confidence 9999999999999999986 5999999999999999999999999999988743 69999999999
Q ss_pred HHHHhhchhccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEeccccc-ccCCCHHHHHHHcC
Q 016804 305 TIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEF-TSSSNPIVQQFASG 374 (382)
Q Consensus 305 ~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~-~~~~~~~~~~~~~~ 374 (382)
++.++.||| .+|++|+|++.|+|+|+ .++.+.|+.+|..+
T Consensus 227 EAlriG~rI------------------------------aimkdG~ivQ~Gtp~eIl~~PAndYV~~Fv~~ 267 (386)
T COG4175 227 EALRIGDRI------------------------------AIMKDGEIVQVGTPEEILLNPANDYVRDFVRN 267 (386)
T ss_pred HHHhccceE------------------------------EEecCCeEEEeCCHHHHHcCccHHHHHHHHhc
Confidence 999999988 99999999999999996 47899999999986
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-54 Score=419.93 Aligned_cols=221 Identities=35% Similarity=0.573 Sum_probs=198.4
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
++|+++||+|+|+++.+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|.++... ... .+.+|
T Consensus 6 ~~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~--~~~-~~~~i 82 (306)
T PRK13537 6 APIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSR--ARH-ARQRV 82 (306)
T ss_pred ceEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccc--hHH-HHhcE
Confidence 579999999999988999999999999999999999999999999999999999999999999987532 112 23469
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
||+||++.+|+.+||+||+.+.... .+.+..+..+++.++++.++|.+..++++++||||||||++|||||++
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~------ 155 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRY-FGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVN------ 155 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhC------
Confidence 9999999999999999999875432 234445556778899999999999999999999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
+|++|||||||+|||+.++..++++|++++++| +|||++||+++++.++||||
T Consensus 156 -~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g----------~till~sH~l~e~~~~~d~i---------------- 208 (306)
T PRK13537 156 -DPDVLVLDEPTTGLDPQARHLMWERLRSLLARG----------KTILLTTHFMEEAERLCDRL---------------- 208 (306)
T ss_pred -CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCC----------CEEEEECCCHHHHHHhCCEE----------------
Confidence 699999999999999999999999999998766 59999999999999999988
Q ss_pred cCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 330 AVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.|+++++.
T Consensus 209 --------------~il~~G~i~~~g~~~~l~ 226 (306)
T PRK13537 209 --------------CVIEEGRKIAEGAPHALI 226 (306)
T ss_pred --------------EEEECCEEEEECCHHHHH
Confidence 999999999999888764
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-53 Score=422.13 Aligned_cols=240 Identities=29% Similarity=0.517 Sum_probs=209.1
Q ss_pred CcceEEEEeEEEEeCC-------------eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEE
Q 016804 88 GDVLIDCRNVYKSFGE-------------KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154 (382)
Q Consensus 88 ~~~~I~~~nvs~~yg~-------------~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~ 154 (382)
.+++|+++||+++|+. .++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|+++|++
T Consensus 5 ~~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~ 84 (331)
T PRK15079 5 KKVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKD 84 (331)
T ss_pred CCceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEE
Confidence 3578999999999962 469999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhh-hccceEEEEecCC--CCCCCCCHHHHHHhhHhhcC-CCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCCh
Q 016804 155 RAGLISDEE-ISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENS-KMRDEQISELVKENLAAVGLK-GVEDRLPSELSG 229 (382)
Q Consensus 155 i~~~~~~~~-~~~~~Ig~V~Q~~--~l~~~lTV~eni~~~~~~~~-~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSG 229 (382)
+........ ..+.+|+||||++ .+++.+||++|+.+++..+. ..+.++..+++.++++.++|. +..+++|.+|||
T Consensus 85 i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSg 164 (331)
T PRK15079 85 LLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSG 164 (331)
T ss_pred CCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCH
Confidence 865432211 1233699999998 58989999999998764332 345666777889999999995 578999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHH
Q 016804 230 GMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRR 308 (382)
Q Consensus 230 GqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~ 308 (382)
||||||+|||||+. +|++||+||||++||+.++.++.++|++++++ + .|+|+||||++.+.+
T Consensus 165 G~~QRv~iArAL~~-------~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~----------~til~iTHdl~~~~~ 227 (331)
T PRK15079 165 GQCQRIGIARALIL-------EPKLIICDEPVSALDVSIQAQVVNLLQQLQREMG----------LSLIFIAHDLAVVKH 227 (331)
T ss_pred HHHHHHHHHHHHhc-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHH
Confidence 99999999999997 69999999999999999999999999999875 4 599999999999999
Q ss_pred hhchhccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 309 AVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 309 ~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
+|||| ++|++|+|++.|+++++. .+.+++++.++..
T Consensus 228 ~~dri------------------------------~vl~~G~ive~g~~~~i~~~~~~py~~~l~~~ 264 (331)
T PRK15079 228 ISDRV------------------------------LVMYLGHAVELGTYDEVYHNPLHPYTKALMSA 264 (331)
T ss_pred hCCEE------------------------------EEEECCEEEEEcCHHHHHcCCCCHHHHHHHhh
Confidence 99988 999999999999888875 5678999887753
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-54 Score=389.60 Aligned_cols=221 Identities=37% Similarity=0.591 Sum_probs=196.8
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
||.+++|.++|+..+ =.++++|+.||++||+|||||||||||++|+||+.|.+|+|+|+|++.....+ ..+-++
T Consensus 1 ~l~L~~V~~~y~~~~--~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P----~~RPVS 74 (231)
T COG3840 1 MLALDDVRFSYGHLP--MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPP----AERPVS 74 (231)
T ss_pred CccccceEEeeCcce--EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCc----ccCChh
Confidence 477899999998654 36788999999999999999999999999999999999999999999765322 233599
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
++||+.+||.++||.+||.+++...-..+ .+.+++++.++.++||.++.+|.|.+|||||||||||||+|++
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~-a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR------- 146 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLN-AEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVR------- 146 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccC-HHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhc-------
Confidence 99999999999999999999875433344 3456788999999999999999999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhcc
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGA 330 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~ 330 (382)
+-+|||||||||+|||..+.++..++.+++.+.+ .|++||||+.+++.+++||+
T Consensus 147 ~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~---------~TllmVTH~~~Da~~ia~~~----------------- 200 (231)
T COG3840 147 EQPILLLDEPFSALDPALRAEMLALVSQLCDERK---------MTLLMVTHHPEDAARIADRV----------------- 200 (231)
T ss_pred cCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhC---------CEEEEEeCCHHHHHHhhhce-----------------
Confidence 5899999999999999999999999999998743 69999999999999999988
Q ss_pred CCCCcccccccEEEEEeCCeEEEEecccccccCC
Q 016804 331 VAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSS 364 (382)
Q Consensus 331 ~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~ 364 (382)
+++++|||.|+|++.+++...
T Consensus 201 -------------~fl~~Gri~~~g~~~~~~~~~ 221 (231)
T COG3840 201 -------------VFLDNGRIAAQGSTQELLSGK 221 (231)
T ss_pred -------------EEEeCCEEEeeccHHHHhccC
Confidence 999999999999999987543
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-53 Score=426.14 Aligned_cols=231 Identities=33% Similarity=0.547 Sum_probs=205.7
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
+|+++||+++|+++.+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.... . .+++||
T Consensus 3 ~l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~-~---~~~~i~ 78 (369)
T PRK11000 3 SVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVP-P---AERGVG 78 (369)
T ss_pred EEEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC-H---hHCCEE
Confidence 489999999999889999999999999999999999999999999999999999999999999875432 1 123699
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
||||++.+|+++||+||+.|++... +....+..+++.++++.+||.++.++++.+|||||||||+|||||+.
T Consensus 79 ~v~Q~~~l~~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~------- 150 (369)
T PRK11000 79 MVFQSYALYPHLSVAENMSFGLKLA-GAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVA------- 150 (369)
T ss_pred EEeCCcccCCCCCHHHHHHhHHhhc-CCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhc-------
Confidence 9999999999999999999876422 34455566788999999999999999999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
+|++|||||||++||+.++..+.+.|+++.++ + .|+|+||||++++..+|||+
T Consensus 151 ~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g----------~tvI~vTHd~~~~~~~~d~i---------------- 204 (369)
T PRK11000 151 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLG----------RTMIYVTHDQVEAMTLADKI---------------- 204 (369)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhC----------CEEEEEeCCHHHHHHhCCEE----------------
Confidence 69999999999999999999999999999775 4 59999999999999999988
Q ss_pred cCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHc
Q 016804 330 AVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFAS 373 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~ 373 (382)
++|++|++++.|+++++. .+.+..+..|+.
T Consensus 205 --------------~vl~~G~i~~~g~~~~i~~~p~~~~~~~~~g 235 (369)
T PRK11000 205 --------------VVLDAGRVAQVGKPLELYHYPANRFVAGFIG 235 (369)
T ss_pred --------------EEEECCEEEEEcCHHHHHhCcccHHHHHhcC
Confidence 999999999999988875 455667776665
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-53 Score=416.14 Aligned_cols=220 Identities=38% Similarity=0.659 Sum_probs=197.4
Q ss_pred eEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 91 LIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 91 ~I~~~nvs~~yg-~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
+++++||+|+|+ ++.+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+.... ... .+.+|
T Consensus 4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~--~~~-~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE--PAK-VRRRI 80 (293)
T ss_pred eeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC--HHH-HHhhe
Confidence 588999999999 69999999999999999999999999999999999999999999999999986531 111 23469
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
||+||++.+++.+||+||+.|....+.. .....+++++++++.+||.+..++++++||+|||||++||+||++
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~------ 153 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGL-SKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLH------ 153 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCC-ChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhc------
Confidence 9999999999999999999997754432 224456788999999999987788999999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
+|++|||||||+||||.++.++.++|++++++|+ +||+++||.++++..+||||
T Consensus 154 -~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~---------~tvlissH~l~e~~~~~d~v---------------- 207 (293)
T COG1131 154 -DPELLILDEPTSGLDPESRREIWELLRELAKEGG---------VTILLSTHILEEAEELCDRV---------------- 207 (293)
T ss_pred -CCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCC---------cEEEEeCCcHHHHHHhCCEE----------------
Confidence 6999999999999999999999999999998863 59999999999999999988
Q ss_pred cCCCCcccccccEEEEEeCCeEEEEeccccc
Q 016804 330 AVAPDKEVFFIYRLIFLYEGKIVWQGMTHEF 360 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~ 360 (382)
++|++|++++.|++.++
T Consensus 208 --------------~il~~G~~~~~g~~~~l 224 (293)
T COG1131 208 --------------IILNDGKIIAEGTPEEL 224 (293)
T ss_pred --------------EEEeCCEEEEeCCHHHH
Confidence 99999999999977765
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-53 Score=398.30 Aligned_cols=236 Identities=36% Similarity=0.564 Sum_probs=202.6
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
||+++|++++|+++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|.++..........+.+++
T Consensus 1 ~l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 80 (240)
T PRK09493 1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAG 80 (240)
T ss_pred CEEEEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceE
Confidence 58899999999988999999999999999999999999999999999999999999999999987532111111233699
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
|+||++.+++.+||+||+.+......+....+..+.+.++++.+|+.+..++++.+||||||||++|||||+.
T Consensus 81 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~------- 153 (240)
T PRK09493 81 MVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAV------- 153 (240)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhc-------
Confidence 9999999998899999998754222223445556678899999999988899999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhcc
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGA 330 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~ 330 (382)
+|++|||||||+|||+.++..+.++|+++++++ +|+|++||+++++..+|||+
T Consensus 154 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~----------~tiii~sH~~~~~~~~~d~i----------------- 206 (240)
T PRK09493 154 KPKLMLFDEPTSALDPELRHEVLKVMQDLAEEG----------MTMVIVTHEIGFAEKVASRL----------------- 206 (240)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHhCCEE-----------------
Confidence 699999999999999999999999999998765 59999999999999999988
Q ss_pred CCCCcccccccEEEEEeCCeEEEEeccccccc-CCCHHHHHHHc
Q 016804 331 VAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFAS 373 (382)
Q Consensus 331 ~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~ 373 (382)
++|++|++++.|++.++.. +..+.+.+++.
T Consensus 207 -------------~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 237 (240)
T PRK09493 207 -------------IFIDKGRIAEDGDPQVLIKNPPSQRLQEFLQ 237 (240)
T ss_pred -------------EEEECCEEEeeCCHHHHhcCCchHHHHHHhh
Confidence 9999999999998887753 34555666554
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-54 Score=404.33 Aligned_cols=236 Identities=34% Similarity=0.592 Sum_probs=213.1
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
+++++++|+|+||+-.+++||||++++||+++||||||||||||+|+|+|+++|++|+|.++|+++..+ +...+.+..|
T Consensus 3 ~lL~v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l-~p~~iar~Gi 81 (250)
T COG0411 3 PLLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGL-PPHRIARLGI 81 (250)
T ss_pred ceeeeccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCC-CHHHHHhccc
Confidence 578999999999999999999999999999999999999999999999999999999999999999876 4444566679
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcC-----------CCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHH
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENS-----------KMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALA 238 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~-----------~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIA 238 (382)
+--||.+.+|++|||.||++.+...+. ....++..+++.++|+.+||.+..+++..+||+|||+|+.||
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIA 161 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIA 161 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHH
Confidence 999999999999999999998743210 013567788899999999999999999999999999999999
Q ss_pred HHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccc
Q 016804 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQI 318 (382)
Q Consensus 239 rAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~ 318 (382)
|||+. +|++||||||.|||.+....++.++|+++++++. .||++|.|||+.+.++||||
T Consensus 162 rALa~-------~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g---------~tillIEHdM~~Vm~l~dri----- 220 (250)
T COG0411 162 RALAT-------QPKLLLLDEPAAGLNPEETEELAELIRELRDRGG---------VTILLIEHDMKLVMGLADRI----- 220 (250)
T ss_pred HHHhc-------CCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCC---------cEEEEEEeccHHHhhhccEE-----
Confidence 99996 6999999999999999999999999999998642 69999999999999999988
Q ss_pred cccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHHcC
Q 016804 319 FGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFASG 374 (382)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 374 (382)
+||+.|+++++|+|+++. .+|.+.+.|-|
T Consensus 221 -------------------------~Vl~~G~~IAeG~P~eV~--~dp~VieAYLG 249 (250)
T COG0411 221 -------------------------VVLNYGEVIAEGTPEEVR--NNPRVIEAYLG 249 (250)
T ss_pred -------------------------EeccCCcCcccCCHHHHh--cCHHhHHHhcC
Confidence 999999999999999987 46777766654
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-53 Score=404.57 Aligned_cols=237 Identities=35% Similarity=0.629 Sum_probs=203.9
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChh-hhccce
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE-EISGLR 168 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~-~~~~~~ 168 (382)
++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++....... ...+.+
T Consensus 6 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~ 85 (269)
T PRK11831 6 NLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKR 85 (269)
T ss_pred ceEEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhc
Confidence 5799999999999889999999999999999999999999999999999999999999999999875432111 111236
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~ 248 (382)
|+|+||++.+|+.+|+.||+.++.......+.....+++.++++.+|+.+..++++.+|||||||||+|||||+.
T Consensus 86 i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~----- 160 (269)
T PRK11831 86 MSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIAL----- 160 (269)
T ss_pred EEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc-----
Confidence 999999999999899999998865322223344445667889999999988999999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheeh
Q 016804 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVII 327 (382)
Q Consensus 249 a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~ 327 (382)
+|++|||||||+|||+.++..+.++|+++.++ | .|+|++|||++++.++||++
T Consensus 161 --~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g----------~tiiivsH~~~~~~~~~d~v-------------- 214 (269)
T PRK11831 161 --EPDLIMFDEPFVGQDPITMGVLVKLISELNSALG----------VTCVVVSHDVPEVLSIADHA-------------- 214 (269)
T ss_pred --CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcC----------cEEEEEecCHHHHHHhhCEE--------------
Confidence 69999999999999999999999999999765 4 59999999999999999988
Q ss_pred hccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHHc
Q 016804 328 LGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFAS 373 (382)
Q Consensus 328 ~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 373 (382)
++|++|++++.|+++++....++.+..++.
T Consensus 215 ----------------~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 244 (269)
T PRK11831 215 ----------------YIVADKKIVAHGSAQALQANPDPRVRQFLD 244 (269)
T ss_pred ----------------EEEECCEEEEeCCHHHHhcCCcHHHHHHHH
Confidence 999999999999888876544555666664
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-53 Score=419.44 Aligned_cols=236 Identities=36% Similarity=0.593 Sum_probs=205.2
Q ss_pred eEEEEeEEEEeC----CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhh-hc
Q 016804 91 LIDCRNVYKSFG----EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE-IS 165 (382)
Q Consensus 91 ~I~~~nvs~~yg----~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~-~~ 165 (382)
||+++||+|+|+ ++++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++........ ..
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 589999999997 4689999999999999999999999999999999999999999999999999765322211 11
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCC
Q 016804 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (382)
Q Consensus 166 ~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~ 245 (382)
+.+||||||++.+|+.+||+||+.++... .+.+..+..+++.++++.+||.+..++++.+|||||||||+|||||+.
T Consensus 81 ~~~ig~v~q~~~l~~~~tv~eni~~~~~~-~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~-- 157 (343)
T PRK11153 81 RRQIGMIFQHFNLLSSRTVFDNVALPLEL-AGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALAS-- 157 (343)
T ss_pred hcCEEEEeCCCccCCCCcHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHc--
Confidence 34699999999999989999999987532 234455566778899999999999999999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchh
Q 016804 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDV 324 (382)
Q Consensus 246 ~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~ 324 (382)
+|++|||||||+|||+.++..+.++|++++++ | +|+|++|||++++.++|||+
T Consensus 158 -----~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g----------~tiilvtH~~~~i~~~~d~v----------- 211 (343)
T PRK11153 158 -----NPKVLLCDEATSALDPATTRSILELLKDINRELG----------LTIVLITHEMDVVKRICDRV----------- 211 (343)
T ss_pred -----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEE-----------
Confidence 69999999999999999999999999999765 5 59999999999999999988
Q ss_pred eehhccCCCCcccccccEEEEEeCCeEEEEeccccccc-CCCHHHHHHHcC
Q 016804 325 VIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFASG 374 (382)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~~ 374 (382)
++|++|++++.|+++++.. +.++....|...
T Consensus 212 -------------------~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 243 (343)
T PRK11153 212 -------------------AVIDAGRLVEQGTVSEVFSHPKHPLTREFIQS 243 (343)
T ss_pred -------------------EEEECCEEEEEcCHHHHHhCCCcHHHHHHHhc
Confidence 9999999999998888753 345666666653
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-53 Score=396.85 Aligned_cols=231 Identities=38% Similarity=0.602 Sum_probs=199.7
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
+|+++||+++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..... .+.+|+
T Consensus 2 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~----~~~~i~ 77 (239)
T cd03296 2 SIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV----QERNVG 77 (239)
T ss_pred EEEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc----cccceE
Confidence 5899999999998899999999999999999999999999999999999999999999999998653211 123699
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCC---CCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSK---MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~---~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~ 247 (382)
|++|++.+|+.+||.||+.++...... ....+..+++.++++.+|+.+..++++.+|||||||||+|||||+.
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~---- 153 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAV---- 153 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhc----
Confidence 999999999889999999886432211 1233445667889999999988999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchhee
Q 016804 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVI 326 (382)
Q Consensus 248 ~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~ 326 (382)
+|++|||||||+|||+.++..+.++|++++++ + +|+|++|||++++..+|||+
T Consensus 154 ---~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~----------~tvii~sH~~~~~~~~~d~i------------- 207 (239)
T cd03296 154 ---EPKVLLLDEPFGALDAKVRKELRRWLRRLHDELH----------VTTVFVTHDQEEALEVADRV------------- 207 (239)
T ss_pred ---CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHhCCEE-------------
Confidence 69999999999999999999999999999875 5 59999999999999999988
Q ss_pred hhccCCCCcccccccEEEEEeCCeEEEEeccccccc-CCCHHHHHHH
Q 016804 327 ILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFA 372 (382)
Q Consensus 327 ~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~-~~~~~~~~~~ 372 (382)
++|++|++++.|+++++.. +.++.+..++
T Consensus 208 -----------------~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 237 (239)
T cd03296 208 -----------------VVMNKGRIEQVGTPDEVYDHPASPFVYSFL 237 (239)
T ss_pred -----------------EEEECCeEEEecCHHHHhcCCCcHHHHHHh
Confidence 9999999999998887653 3455555544
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-53 Score=416.07 Aligned_cols=239 Identities=28% Similarity=0.500 Sum_probs=208.6
Q ss_pred cceEEEEeEEEEeCC----------eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCC
Q 016804 89 DVLIDCRNVYKSFGE----------KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGL 158 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~----------~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~ 158 (382)
+++|+++||+++|+. .++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++...
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~ 82 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKA 82 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcC
Confidence 467999999999962 5799999999999999999999999999999999999999999999999998654
Q ss_pred CChh-hhccceEEEEecCC--CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHH
Q 016804 159 ISDE-EISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKR 234 (382)
Q Consensus 159 ~~~~-~~~~~~Ig~V~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQR 234 (382)
.... ...+.+|+||||++ .|++.+||.+++.+.+..+......+..+++.++++.+||. ...+++|++||||||||
T Consensus 83 ~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QR 162 (327)
T PRK11308 83 DPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQR 162 (327)
T ss_pred CHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHH
Confidence 2221 11233699999998 58899999999987654443345556677889999999996 47899999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 235 VALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 235 VaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
|+|||||+. +|++||+||||++||+.++.+++++|++++++ | .|+|+||||++.+.++||||
T Consensus 163 v~iArAL~~-------~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g----------~til~iTHdl~~~~~~adrv 225 (327)
T PRK11308 163 IAIARALML-------DPDVVVADEPVSALDVSVQAQVLNLMMDLQQELG----------LSYVFISHDLSVVEHIADEV 225 (327)
T ss_pred HHHHHHHHc-------CCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHhCCEE
Confidence 999999997 69999999999999999999999999999875 4 59999999999999999988
Q ss_pred ccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 314 CLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
++|++|+|++.|+++++. .+.+|+++.++..
T Consensus 226 ------------------------------~vm~~G~ive~g~~~~~~~~p~hpyt~~ll~~ 257 (327)
T PRK11308 226 ------------------------------MVMYLGRCVEKGTKEQIFNNPRHPYTQALLSA 257 (327)
T ss_pred ------------------------------EEEECCEEEEECCHHHHhcCCCCHHHHHHHHh
Confidence 999999999999888876 4678999988764
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-53 Score=396.46 Aligned_cols=222 Identities=36% Similarity=0.618 Sum_probs=194.2
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
|+++||+++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... .....+.+++|
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~~~i~~ 79 (236)
T cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLP-PHEIARLGIGR 79 (236)
T ss_pred CeeeeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCC-HHHHHhcCEEE
Confidence 46899999999888999999999999999999999999999999999999999999999999875432 22222335999
Q ss_pred EecCCCCCCCCCHHHHHHhhHhhcCCC---------CHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHh
Q 016804 172 VFQSAALFDSLTVRENVGFLLYENSKM---------RDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSII 242 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~~~~~~~~~---------~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~ 242 (382)
+||++.+|+.+||+||+.++....... ...+..+.+.++++.+|+.+..++++.+|||||||||+|||||+
T Consensus 80 v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~ 159 (236)
T cd03219 80 TFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALA 159 (236)
T ss_pred EecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHh
Confidence 999999999999999998865322111 13445567889999999998899999999999999999999999
Q ss_pred cCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccc
Q 016804 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHI 322 (382)
Q Consensus 243 ~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~ 322 (382)
. +|++|||||||++||+.++..+.+.|+++++++ +|+|++|||++++..+|||+
T Consensus 160 ~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tii~vsH~~~~~~~~~d~i--------- 213 (236)
T cd03219 160 T-------DPKLLLLDEPAAGLNPEETEELAELIRELRERG----------ITVLLVEHDMDVVMSLADRV--------- 213 (236)
T ss_pred c-------CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCC----------CEEEEEecCHHHHHHhCCEE---------
Confidence 7 699999999999999999999999999998765 59999999999999999988
Q ss_pred hheehhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 323 DVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.|+++++.
T Consensus 214 ---------------------~~l~~G~i~~~~~~~~~~ 231 (236)
T cd03219 214 ---------------------TVLDQGRVIAEGTPDEVR 231 (236)
T ss_pred ---------------------EEEeCCEEEeecCHHHhc
Confidence 999999999999777764
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-53 Score=418.69 Aligned_cols=224 Identities=36% Similarity=0.558 Sum_probs=199.3
Q ss_pred CCcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhcc
Q 016804 87 DGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (382)
Q Consensus 87 ~~~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~ 166 (382)
...++|+++||+|+|+++.+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++... ... .+
T Consensus 37 ~~~~~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~--~~~-~~ 113 (340)
T PRK13536 37 MSTVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPAR--ARL-AR 113 (340)
T ss_pred CCceeEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcc--hHH-Hh
Confidence 344689999999999999999999999999999999999999999999999999999999999999987532 111 23
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCC
Q 016804 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT 246 (382)
Q Consensus 167 ~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~ 246 (382)
.+|||+||++.+++.+|++||+.+....+ +.+..+..+++.++++.++|.+..++++.+||||||||++|||||++
T Consensus 114 ~~ig~v~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~--- 189 (340)
T PRK13536 114 ARIGVVPQFDNLDLEFTVRENLLVFGRYF-GMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALIN--- 189 (340)
T ss_pred ccEEEEeCCccCCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhc---
Confidence 46999999999999999999998754322 23444556677889999999999999999999999999999999997
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchhee
Q 016804 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVI 326 (382)
Q Consensus 247 ~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~ 326 (382)
+|++|||||||+|||+.++.+++++|++++++| .|||++||+++++.++||||
T Consensus 190 ----~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g----------~tilisSH~l~e~~~~~d~i------------- 242 (340)
T PRK13536 190 ----DPQLLILDEPTTGLDPHARHLIWERLRSLLARG----------KTILLTTHFMEEAERLCDRL------------- 242 (340)
T ss_pred ----CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCC----------CEEEEECCCHHHHHHhCCEE-------------
Confidence 699999999999999999999999999998766 59999999999999999988
Q ss_pred hhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 327 ILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 327 ~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.|+++++.
T Consensus 243 -----------------~il~~G~i~~~g~~~~l~ 260 (340)
T PRK13536 243 -----------------CVLEAGRKIAEGRPHALI 260 (340)
T ss_pred -----------------EEEECCEEEEEcCHHHHH
Confidence 999999999999888764
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-52 Score=397.65 Aligned_cols=237 Identities=36% Similarity=0.531 Sum_probs=203.6
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCC------hhhh
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS------DEEI 164 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~------~~~~ 164 (382)
+|+++||+++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..... ....
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK11264 3 AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQ 82 (250)
T ss_pred cEEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHH
Confidence 6999999999998889999999999999999999999999999999999999999999999998753210 0111
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcC
Q 016804 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFD 244 (382)
Q Consensus 165 ~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~ 244 (382)
.+.+++|+||++.+|+.+|+.||+.++..........+..+++.++++.+|+....++++.+|||||||||+|||||+.
T Consensus 83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~- 161 (250)
T PRK11264 83 LRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAM- 161 (250)
T ss_pred hhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhc-
Confidence 2336999999999998899999998754322233444556678899999999988899999999999999999999997
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchh
Q 016804 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDV 324 (382)
Q Consensus 245 ~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~ 324 (382)
+|++|||||||+|||+.++..+.++|+++.+++ .|+|++|||++++.++|||+
T Consensus 162 ------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tvi~~tH~~~~~~~~~d~i----------- 214 (250)
T PRK11264 162 ------RPEVILFDEPTSALDPELVGEVLNTIRQLAQEK----------RTMVIVTHEMSFARDVADRA----------- 214 (250)
T ss_pred ------CCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhcCEE-----------
Confidence 699999999999999999999999999998765 59999999999999999988
Q ss_pred eehhccCCCCcccccccEEEEEeCCeEEEEeccccccc-CCCHHHHHHHcC
Q 016804 325 VIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFASG 374 (382)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~~ 374 (382)
++|++|++++.|+++++.. +.++....|+.+
T Consensus 215 -------------------~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~ 246 (250)
T PRK11264 215 -------------------IFMDQGRIVEQGPAKALFADPQQPRTRQFLEK 246 (250)
T ss_pred -------------------EEEECCEEEEeCCHHHHhcCCCCHHHHHHHHh
Confidence 9999999999998888653 455676666544
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-53 Score=391.61 Aligned_cols=205 Identities=36% Similarity=0.557 Sum_probs=179.1
Q ss_pred eEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChh-hhccc
Q 016804 91 LIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE-EISGL 167 (382)
Q Consensus 91 ~I~~~nvs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~-~~~~~ 167 (382)
||+++||+++|++ +++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++....... ...+.
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 5899999999964 46999999999999999999999999999999999999999999999999875432111 11123
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 016804 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (382)
Q Consensus 168 ~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~ 247 (382)
+++|+||++.+|+.+||+||+.++.... +....+..+++.++++.+|+.+..++++.+|||||||||+|||||+.
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~---- 155 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRII-GVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVH---- 155 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc----
Confidence 6999999999999899999998865322 23344456678899999999999999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 248 ~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|++|||||||+|||+.++..+.++|+++++++ .|+|++|||++++..+|||+
T Consensus 156 ---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tii~vsH~~~~~~~~~d~i 208 (216)
T TIGR00960 156 ---KPPLLLADEPTGNLDPELSRDIMRLFEEFNRRG----------TTVLVATHDINLVETYRHRT 208 (216)
T ss_pred ---CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHhCCEE
Confidence 699999999999999999999999999997765 59999999999999999988
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-53 Score=422.76 Aligned_cols=228 Identities=32% Similarity=0.513 Sum_probs=201.9
Q ss_pred EEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhh--hccceEEEEecCC
Q 016804 99 KSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE--ISGLRIGLVFQSA 176 (382)
Q Consensus 99 ~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~--~~~~~Ig~V~Q~~ 176 (382)
|+|+++.+|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|+++|+++........ ..+.+||||||++
T Consensus 1 ~~~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~ 80 (363)
T TIGR01186 1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80 (363)
T ss_pred CccCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence 56888899999999999999999999999999999999999999999999999999875422211 1134699999999
Q ss_pred CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEE
Q 016804 177 ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLL 256 (382)
Q Consensus 177 ~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLL 256 (382)
.+|+++||+||+.++... .+.+.++..+++.++++.+||+.+.+++|.+|||||||||+|||||+. +|+|||
T Consensus 81 ~l~~~~TV~eNi~~~~~~-~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~-------~p~iLL 152 (363)
T TIGR01186 81 ALFPHMTILQNTSLGPEL-LGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAA-------EPDILL 152 (363)
T ss_pred cCCCCCCHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhc-------CCCEEE
Confidence 999999999999987643 345566677889999999999999999999999999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccCCCCc
Q 016804 257 YDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDK 335 (382)
Q Consensus 257 LDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~ 335 (382)
|||||++||+.++..+++.|.+++++ + +|+|+||||++++.++||||
T Consensus 153 lDEP~saLD~~~r~~l~~~l~~l~~~~~----------~Tii~vTHd~~ea~~~~drI---------------------- 200 (363)
T TIGR01186 153 MDEAFSALDPLIRDSMQDELKKLQATLQ----------KTIVFITHDLDEAIRIGDRI---------------------- 200 (363)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEE----------------------
Confidence 99999999999999999999999765 4 59999999999999999988
Q ss_pred ccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 336 EVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 336 ~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
++|++|++++.|+++++. .+.++++..|...
T Consensus 201 --------~vl~~G~iv~~g~~~ei~~~p~~~~~~~~~~~ 232 (363)
T TIGR01186 201 --------VIMKAGEIVQVGTPDEILRNPANEYVEEFIGK 232 (363)
T ss_pred --------EEEeCCEEEeeCCHHHHHhCcccHHHHHHhhc
Confidence 999999999999988875 4567788877654
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-52 Score=395.71 Aligned_cols=235 Identities=32% Similarity=0.519 Sum_probs=201.7
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC-----ccEEEECCEECCCCCChhhhc
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD-----KGEVYIRGRKRAGLISDEEIS 165 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~-----sG~I~i~G~~i~~~~~~~~~~ 165 (382)
+|+++||+++|++..+|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|+++|+++..........
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~ 80 (247)
T TIGR00972 1 AIEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVEL 80 (247)
T ss_pred CEEEEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHH
Confidence 488999999999888999999999999999999999999999999999999998 999999999875321111112
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc----ccccCCCCCCChHHHHHHHHHHHH
Q 016804 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALARSI 241 (382)
Q Consensus 166 ~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~----~~~~~~~~~LSGGqrQRVaIArAL 241 (382)
+.+|+|+||++.+|+ +|++||+.+...........+..+.+.++++.+|+. +..++++.+|||||||||+|||||
T Consensus 81 ~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral 159 (247)
T TIGR00972 81 RRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARAL 159 (247)
T ss_pred HhheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 336999999999998 899999988653222123445566788999999998 778899999999999999999999
Q ss_pred hcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccccc
Q 016804 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGH 321 (382)
Q Consensus 242 ~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~ 321 (382)
+. +|++|||||||+|||+.++..+.++|+++.++ .|+|++|||++++..+|||+
T Consensus 160 ~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-----------~tiiivsH~~~~~~~~~d~i-------- 213 (247)
T TIGR00972 160 AV-------EPEVLLLDEPTSALDPIATGKIEELIQELKKK-----------YTIVIVTHNMQQAARISDRT-------- 213 (247)
T ss_pred hc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc-----------CeEEEEecCHHHHHHhCCEE--------
Confidence 97 69999999999999999999999999999764 49999999999999999988
Q ss_pred chheehhccCCCCcccccccEEEEEeCCeEEEEeccccccc-CCCHHHHHHHcC
Q 016804 322 IDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFASG 374 (382)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~~ 374 (382)
++|++|++++.|+++++.. +.++.+.+++.+
T Consensus 214 ----------------------~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~ 245 (247)
T TIGR00972 214 ----------------------AFFYDGELVEYGPTEQIFTNPKEKRTEDYISG 245 (247)
T ss_pred ----------------------EEEECCEEEEeCCHHHHHhCCCChHHHHHhcc
Confidence 9999999999998888753 456677777654
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-52 Score=410.51 Aligned_cols=222 Identities=35% Similarity=0.561 Sum_probs=196.5
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
+.+|+++||+|+|+++.+|+++||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++... ... .+.+
T Consensus 2 ~~~i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~--~~~-~~~~ 78 (303)
T TIGR01288 2 NVAIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR--ARL-ARVA 78 (303)
T ss_pred CcEEEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc--HHH-Hhhc
Confidence 3579999999999988999999999999999999999999999999999999999999999999986432 111 2346
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~ 248 (382)
|||+||++.+++.+||+||+.+....+ +.+..+..+++.++++.+++.+..++++.+|||||||||+|||||+.
T Consensus 79 i~~v~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~----- 152 (303)
T TIGR01288 79 IGVVPQFDNLDPEFTVRENLLVFGRYF-GMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALIN----- 152 (303)
T ss_pred EEEEeccccCCcCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhc-----
Confidence 999999999999999999998643222 23444555677889999999999999999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehh
Q 016804 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIIL 328 (382)
Q Consensus 249 a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~ 328 (382)
+|++|||||||+|||+.++..+.++|++++++| .|||++|||++++.++|||+
T Consensus 153 --~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g----------~til~~sH~~~~~~~~~d~i--------------- 205 (303)
T TIGR01288 153 --DPQLLILDEPTTGLDPHARHLIWERLRSLLARG----------KTILLTTHFMEEAERLCDRL--------------- 205 (303)
T ss_pred --CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCC----------CEEEEECCCHHHHHHhCCEE---------------
Confidence 699999999999999999999999999998766 59999999999999999988
Q ss_pred ccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 329 GAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 329 ~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.|+++++.
T Consensus 206 ---------------~~l~~G~i~~~g~~~~~~ 223 (303)
T TIGR01288 206 ---------------CVLESGRKIAEGRPHALI 223 (303)
T ss_pred ---------------EEEECCEEEEEcCHHHHH
Confidence 999999999999887764
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-52 Score=389.18 Aligned_cols=212 Identities=39% Similarity=0.655 Sum_probs=188.1
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
|+++||+++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... . .+.+++|
T Consensus 1 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~--~--~~~~i~~ 76 (213)
T cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP--P--ERRNIGM 76 (213)
T ss_pred CeeeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc--h--hhccEEE
Confidence 47899999998889999999999999999999999999999999999999999999999999875421 1 1236999
Q ss_pred EecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCC
Q 016804 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~ 251 (382)
+||++.+|+.+|++||+.+..... +.......+++.++++.+++.+..++++.+||||||||++|||||+. +
T Consensus 77 v~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~-------~ 148 (213)
T cd03259 77 VFQDYALFPHLTVAENIAFGLKLR-GVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAR-------E 148 (213)
T ss_pred EcCchhhccCCcHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhc-------C
Confidence 999999998899999998764322 23344555678899999999988999999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhcc
Q 016804 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGA 330 (382)
Q Consensus 252 P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~ 330 (382)
|++|||||||+|||+.++..+.++|++++++ + .|||++|||++++.++|||+
T Consensus 149 p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tii~~sH~~~~~~~~~d~v----------------- 201 (213)
T cd03259 149 PSLLLLDEPLSALDAKLREELREELKELQRELG----------ITTIYVTHDQEEALALADRI----------------- 201 (213)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC----------CEEEEEecCHHHHHHhcCEE-----------------
Confidence 9999999999999999999999999999764 5 59999999999999999988
Q ss_pred CCCCcccccccEEEEEeCCeEEEEe
Q 016804 331 VAPDKEVFFIYRLIFLYEGKIVWQG 355 (382)
Q Consensus 331 ~~~~~~~~~~~~ii~l~~G~i~~~g 355 (382)
++|++|++++.|
T Consensus 202 -------------~~l~~G~i~~~g 213 (213)
T cd03259 202 -------------AVMNEGRIVQVG 213 (213)
T ss_pred -------------EEEECCEEEecC
Confidence 999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-52 Score=396.99 Aligned_cols=240 Identities=34% Similarity=0.548 Sum_probs=205.6
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCC----------
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLI---------- 159 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~---------- 159 (382)
.+|+++||++.|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++....
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 83 (257)
T PRK10619 4 NKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVAD 83 (257)
T ss_pred ccEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccccccc
Confidence 3599999999999899999999999999999999999999999999999999999999999999864210
Q ss_pred C-hhhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccc-cCCCCCCChHHHHHHHH
Q 016804 160 S-DEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVE-DRLPSELSGGMKKRVAL 237 (382)
Q Consensus 160 ~-~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~-~~~~~~LSGGqrQRVaI 237 (382)
. .....+.+|+|+||++.+++.+|++||+.++..........+..+++.++++.+|+.+.. ++++.+||||||||++|
T Consensus 84 ~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~l 163 (257)
T PRK10619 84 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSI 163 (257)
T ss_pred chHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHH
Confidence 0 111123369999999999998999999987542222234445567788999999998764 88999999999999999
Q ss_pred HHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccc
Q 016804 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQ 317 (382)
Q Consensus 238 ArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~ 317 (382)
||||+. +|++|||||||+|||+.++..+.++|++++++| +|+|+||||++++..+|||+
T Consensus 164 aral~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g----------~tiiivsH~~~~~~~~~d~i---- 222 (257)
T PRK10619 164 ARALAM-------EPEVLLFDEPTSALDPELVGEVLRIMQQLAEEG----------KTMVVVTHEMGFARHVSSHV---- 222 (257)
T ss_pred HHHHhc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhcCEE----
Confidence 999997 699999999999999999999999999998766 59999999999999999988
Q ss_pred ccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcCCC
Q 016804 318 IFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASGSL 376 (382)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~~~ 376 (382)
++|++|++++.|+++++. .+.++..++|+.|++
T Consensus 223 --------------------------~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (257)
T PRK10619 223 --------------------------IFLHQGKIEEEGAPEQLFGNPQSPRLQQFLKGSL 256 (257)
T ss_pred --------------------------EEEECCEEEEeCCHHHhhhCccCHHHHHHhhccC
Confidence 999999999999887765 345577788887765
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-52 Score=390.51 Aligned_cols=217 Identities=35% Similarity=0.597 Sum_probs=192.3
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
|+++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... . .. .+.+++|
T Consensus 1 i~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~-~~-~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-P-RE-VRRRIGI 77 (220)
T ss_pred CEEEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-h-HH-HhhcEEE
Confidence 5789999999988999999999999999999999999999999999999999999999999886431 1 12 1236999
Q ss_pred EecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCC
Q 016804 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~ 251 (382)
+||++.+++.+||++|+.+..... +....+..+++.++++.++|.+..++++.+||||||||++|||||+. +
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~-------~ 149 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLY-GVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVH-------R 149 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhc-------C
Confidence 999999999899999998865322 23444556678899999999988999999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhcc
Q 016804 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGA 330 (382)
Q Consensus 252 P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~ 330 (382)
|++|||||||++||+.++..+.+.|+++.++ + .|+|++|||++++..+|||+
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tvi~~tH~~~~~~~~~d~i----------------- 202 (220)
T cd03265 150 PEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFG----------MTILLTTHYMEEAEQLCDRV----------------- 202 (220)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEE-----------------
Confidence 9999999999999999999999999999876 5 59999999999999999988
Q ss_pred CCCCcccccccEEEEEeCCeEEEEecccc
Q 016804 331 VAPDKEVFFIYRLIFLYEGKIVWQGMTHE 359 (382)
Q Consensus 331 ~~~~~~~~~~~~ii~l~~G~i~~~g~~~~ 359 (382)
++|++|++++.|++++
T Consensus 203 -------------~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 203 -------------AIIDHGRIIAEGTPEE 218 (220)
T ss_pred -------------EEEeCCEEEEeCChHH
Confidence 9999999999886554
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-52 Score=392.82 Aligned_cols=223 Identities=38% Similarity=0.611 Sum_probs=195.1
Q ss_pred eEEEEeEEEEeCCe----eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChh-hhc
Q 016804 91 LIDCRNVYKSFGEK----HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE-EIS 165 (382)
Q Consensus 91 ~I~~~nvs~~yg~~----~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~-~~~ 165 (382)
||+++|++++|+++ ++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++....... ...
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKA 80 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHH
Confidence 58999999999876 8999999999999999999999999999999999999999999999999875432111 111
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCC
Q 016804 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (382)
Q Consensus 166 ~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~ 245 (382)
+.+|+|+||++.+|+.+|++||+.+..... +.......+.+.++++.+++.+..++++.+|||||||||+|||||+.
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~-- 157 (233)
T cd03258 81 RRRIGMIFQHFNLLSSRTVFENVALPLEIA-GVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALAN-- 157 (233)
T ss_pred HhheEEEccCcccCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhc--
Confidence 336999999999999899999998865322 23444456678899999999998999999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchh
Q 016804 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDV 324 (382)
Q Consensus 246 ~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~ 324 (382)
+|++|||||||+|||+.++..+.+.|+++.++ + +|+|++||+++++.++||++
T Consensus 158 -----~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~----------~tvii~sH~~~~~~~~~d~i----------- 211 (233)
T cd03258 158 -----NPKVLLCDEATSALDPETTQSILALLRDINRELG----------LTIVLITHEMEVVKRICDRV----------- 211 (233)
T ss_pred -----CCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHhCCEE-----------
Confidence 69999999999999999999999999999775 5 59999999999999999988
Q ss_pred eehhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 325 VIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.|+++++.
T Consensus 212 -------------------~~l~~G~i~~~~~~~~~~ 229 (233)
T cd03258 212 -------------------AVMEKGEVVEEGTVEEVF 229 (233)
T ss_pred -------------------EEEECCEEEEecCHHHHh
Confidence 999999999999776654
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-52 Score=412.62 Aligned_cols=236 Identities=26% Similarity=0.451 Sum_probs=205.0
Q ss_pred eEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC----CCccEEEECCEECCCCCChh
Q 016804 91 LIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA----PDKGEVYIRGRKRAGLISDE 162 (382)
Q Consensus 91 ~I~~~nvs~~yg~----~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~----p~sG~I~i~G~~i~~~~~~~ 162 (382)
+|+++||++.|+. .++|+||||+|++||++||+||||||||||+++|+|+++ |++|+|.++|+++.......
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 5899999999976 479999999999999999999999999999999999998 48999999999986543222
Q ss_pred hh--ccceEEEEecCC--CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc---cccCCCCCCChHHHHHH
Q 016804 163 EI--SGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG---VEDRLPSELSGGMKKRV 235 (382)
Q Consensus 163 ~~--~~~~Ig~V~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~---~~~~~~~~LSGGqrQRV 235 (382)
.. .+.+|+||||++ .+++.+|+.+++...+..+.+...++..+++.++++.+||.+ ..+++|++|||||||||
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv 162 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRV 162 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHH
Confidence 11 223599999998 578899999998776544333455566778899999999963 57899999999999999
Q ss_pred HHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhc
Q 016804 236 ALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLC 314 (382)
Q Consensus 236 aIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~ 314 (382)
+|||||+. +|+|||+||||++||+.++.+++++|++++++ | .|+|+||||++.+.++||||
T Consensus 163 ~iArAL~~-------~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g----------~til~iTHdl~~~~~~adri- 224 (326)
T PRK11022 163 MIAMAIAC-------RPKLLIADEPTTALDVTIQAQIIELLLELQQKEN----------MALVLITHDLALVAEAAHKI- 224 (326)
T ss_pred HHHHHHHh-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEE-
Confidence 99999997 69999999999999999999999999999875 4 59999999999999999988
Q ss_pred cccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHc
Q 016804 315 LFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFAS 373 (382)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~ 373 (382)
++|++|+|++.|++.++. .+.+|+++.++.
T Consensus 225 -----------------------------~vm~~G~ive~g~~~~~~~~p~hpyt~~ll~ 255 (326)
T PRK11022 225 -----------------------------IVMYAGQVVETGKAHDIFRAPRHPYTQALLR 255 (326)
T ss_pred -----------------------------EEEECCEEEEECCHHHHhhCCCChHHHHHHH
Confidence 999999999999888876 567899988765
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-52 Score=390.86 Aligned_cols=221 Identities=32% Similarity=0.594 Sum_probs=194.4
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... .....+.+++|
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~-~~~~~~~~i~~ 79 (232)
T cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLP-MHKRARLGIGY 79 (232)
T ss_pred CeEEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCC-HhHHHhccEEE
Confidence 47899999999889999999999999999999999999999999999999999999999999865432 11222235999
Q ss_pred EecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCC
Q 016804 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~ 251 (382)
+||++.+|+.+|++||+.+..... .....+..+++.++++.+++.+..++.+.+||||||||++|||||+. +
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~-------~ 151 (232)
T cd03218 80 LPQEASIFRKLTVEENILAVLEIR-GLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALAT-------N 151 (232)
T ss_pred ecCCccccccCcHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc-------C
Confidence 999999999899999998864322 23344455677899999999988999999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccC
Q 016804 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAV 331 (382)
Q Consensus 252 P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~ 331 (382)
|++|||||||+|||+.++..+.++|+++.+++ .|+|++|||++++.++|||+
T Consensus 152 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~----------~tii~~sH~~~~~~~~~d~i------------------ 203 (232)
T cd03218 152 PKFLLLDEPFAGVDPIAVQDIQKIIKILKDRG----------IGVLITDHNVRETLSITDRA------------------ 203 (232)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHhCCEE------------------
Confidence 99999999999999999999999999998765 59999999999999999988
Q ss_pred CCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 332 APDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 332 ~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.|+.+++.
T Consensus 204 ------------~~l~~G~i~~~~~~~~~~ 221 (232)
T cd03218 204 ------------YIIYEGKVLAEGTPEEIA 221 (232)
T ss_pred ------------EEEECCeEEEEeCHHHhh
Confidence 999999999999777764
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-52 Score=412.38 Aligned_cols=238 Identities=26% Similarity=0.472 Sum_probs=207.3
Q ss_pred cceEEEEeEEEEeC----CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC---ccEEEECCEECCCCCCh
Q 016804 89 DVLIDCRNVYKSFG----EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD---KGEVYIRGRKRAGLISD 161 (382)
Q Consensus 89 ~~~I~~~nvs~~yg----~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~---sG~I~i~G~~i~~~~~~ 161 (382)
+++|+++||+++|+ ...+|+||||+|++||++||+|+||||||||+++|+|+++|+ +|+|+++|+++..+...
T Consensus 10 ~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~ 89 (330)
T PRK09473 10 DALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEK 89 (330)
T ss_pred CceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHH
Confidence 46899999999994 357999999999999999999999999999999999999996 99999999998764322
Q ss_pred hh--hccceEEEEecCC--CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc---cccCCCCCCChHHHHH
Q 016804 162 EE--ISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG---VEDRLPSELSGGMKKR 234 (382)
Q Consensus 162 ~~--~~~~~Ig~V~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~---~~~~~~~~LSGGqrQR 234 (382)
.. .++.+|+||||++ .+++.+|+.+|+.+....+.+....+..+++.++++.+||.+ ..+++|++||||||||
T Consensus 90 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QR 169 (330)
T PRK09473 90 ELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQR 169 (330)
T ss_pred HHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHH
Confidence 21 1223699999998 688999999999876544433455666678899999999964 4578999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 235 VALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 235 VaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
|+|||||+. +|++||+||||++||+.++..++++|++++++ + .|+|+||||++.+.++|||+
T Consensus 170 v~IArAL~~-------~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g----------~til~iTHdl~~~~~~~Dri 232 (330)
T PRK09473 170 VMIAMALLC-------RPKLLIADEPTTALDVTVQAQIMTLLNELKREFN----------TAIIMITHDLGVVAGICDKV 232 (330)
T ss_pred HHHHHHHHc-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcC----------CEEEEEECCHHHHHHhCCEE
Confidence 999999997 69999999999999999999999999999876 4 59999999999999999988
Q ss_pred ccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHc
Q 016804 314 CLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFAS 373 (382)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~ 373 (382)
++|++|+|++.|+++++. .+.+|+++.++.
T Consensus 233 ------------------------------~vm~~G~ive~g~~~~i~~~p~~pyt~~l~~ 263 (330)
T PRK09473 233 ------------------------------LVMYAGRTMEYGNARDVFYQPSHPYSIGLLN 263 (330)
T ss_pred ------------------------------EEEECCEEEEECCHHHHHhCCCCHHHHHHHH
Confidence 999999999999988875 578999998875
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-52 Score=399.11 Aligned_cols=236 Identities=30% Similarity=0.522 Sum_probs=203.4
Q ss_pred eEEEEeEEEEeC---------CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCCh
Q 016804 91 LIDCRNVYKSFG---------EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD 161 (382)
Q Consensus 91 ~I~~~nvs~~yg---------~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~ 161 (382)
+|+++||+|+|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++......
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 689999999995 36799999999999999999999999999999999999999999999999987543221
Q ss_pred h-hhccceEEEEecCC--CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHH
Q 016804 162 E-EISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVAL 237 (382)
Q Consensus 162 ~-~~~~~~Ig~V~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaI 237 (382)
. ...+.+|+|+||++ .+++.+|++||+.+...........+..+++.++++.+|+. ...++++.+|||||||||+|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~l 161 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINI 161 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHH
Confidence 1 11123699999997 46777899999987653222234444556788999999996 67899999999999999999
Q ss_pred HHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccc
Q 016804 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLF 316 (382)
Q Consensus 238 ArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~ 316 (382)
||||+. +|++|||||||++||+.++..+.+.|+++.++ + .|||++|||++.+..+||++
T Consensus 162 aral~~-------~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g----------~tiiivsH~~~~~~~~~d~i--- 221 (265)
T TIGR02769 162 ARALAV-------KPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFG----------TAYLFITHDLRLVQSFCQRV--- 221 (265)
T ss_pred HHHHhc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------cEEEEEeCCHHHHHHHhcEE---
Confidence 999997 69999999999999999999999999999875 5 59999999999999999988
Q ss_pred cccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHHc
Q 016804 317 QIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFAS 373 (382)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 373 (382)
++|++|++++.|++.++....+|+++++..
T Consensus 222 ---------------------------~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 251 (265)
T TIGR02769 222 ---------------------------AVMDKGQIVEECDVAQLLSFKHPAGRNLQS 251 (265)
T ss_pred ---------------------------EEEeCCEEEEECCHHHHcCCCCHHHHHHHH
Confidence 999999999999988887778899988873
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-52 Score=392.31 Aligned_cols=235 Identities=31% Similarity=0.501 Sum_probs=200.1
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCC--C--hhhhcc
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLI--S--DEEISG 166 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~--~--~~~~~~ 166 (382)
+|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.... . .....+
T Consensus 2 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (242)
T PRK11124 2 SIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELR 81 (242)
T ss_pred EEEEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHH
Confidence 689999999999889999999999999999999999999999999999999999999999999863110 1 111112
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCC
Q 016804 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT 246 (382)
Q Consensus 167 ~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~ 246 (382)
.+|+|+||++.+|+.+|+.||+.+......+....+..+++.++++.+|+.++.++++.+||||||||++|||||+.
T Consensus 82 ~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~--- 158 (242)
T PRK11124 82 RNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMM--- 158 (242)
T ss_pred hheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc---
Confidence 36999999999999999999997533222223344455678899999999988999999999999999999999997
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchhee
Q 016804 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVI 326 (382)
Q Consensus 247 ~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~ 326 (382)
+|++|||||||+|||+.++..+.++|+++.+++ +|+|++|||++++.++|||+
T Consensus 159 ----~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tii~~sh~~~~~~~~~d~i------------- 211 (242)
T PRK11124 159 ----EPQVLLFDEPTAALDPEITAQIVSIIRELAETG----------ITQVIVTHEVEVARKTASRV------------- 211 (242)
T ss_pred ----CCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHhcCEE-------------
Confidence 599999999999999999999999999997665 59999999999999999988
Q ss_pred hhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHH
Q 016804 327 ILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFA 372 (382)
Q Consensus 327 ~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 372 (382)
++|++|++++.|+++++..+.++...+++
T Consensus 212 -----------------~~l~~g~i~~~~~~~~~~~~~~~~~~~~~ 240 (242)
T PRK11124 212 -----------------VYMENGHIVEQGDASCFTQPQTEAFKNYL 240 (242)
T ss_pred -----------------EEEECCEEEEeCCHHHhcCcccHHHHHhh
Confidence 99999999999987777655555555544
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-52 Score=390.09 Aligned_cols=219 Identities=38% Similarity=0.593 Sum_probs=188.1
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC-----CCCccEEEECCEECCCCCChhhhcc
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL-----APDKGEVYIRGRKRAGLISDEEISG 166 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~-----~p~sG~I~i~G~~i~~~~~~~~~~~ 166 (382)
|+++||+++|+++++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|+++..........+
T Consensus 1 i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (227)
T cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELR 80 (227)
T ss_pred CEEEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHH
Confidence 57899999999889999999999999999999999999999999999999 9999999999998754321011123
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCC--CCCCChHHHHHHHHHHHHhcC
Q 016804 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL--PSELSGGMKKRVALARSIIFD 244 (382)
Q Consensus 167 ~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~--~~~LSGGqrQRVaIArAL~~~ 244 (382)
.+|+|+||++.+| .+||+||+.+...........+..+++.++++.+|+.+..++. +.+||||||||++|||||+.
T Consensus 81 ~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~- 158 (227)
T cd03260 81 RRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALAN- 158 (227)
T ss_pred hhEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhc-
Confidence 3699999999988 6899999988653221112223456788999999998877766 59999999999999999997
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchh
Q 016804 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDV 324 (382)
Q Consensus 245 ~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~ 324 (382)
+|++|||||||+|||+.++..+.++|++++++ .|+|++|||++++..+|||+
T Consensus 159 ------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-----------~tii~~sH~~~~~~~~~d~i----------- 210 (227)
T cd03260 159 ------EPEVLLLDEPTSALDPISTAKIEELIAELKKE-----------YTIVIVTHNMQQAARVADRT----------- 210 (227)
T ss_pred ------CCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-----------cEEEEEeccHHHHHHhCCEE-----------
Confidence 69999999999999999999999999999765 39999999999999999988
Q ss_pred eehhccCCCCcccccccEEEEEeCCeEEEEecccc
Q 016804 325 VIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHE 359 (382)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~ 359 (382)
++|++|++++.|++++
T Consensus 211 -------------------~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 211 -------------------AFLLNGRLVEFGPTEQ 226 (227)
T ss_pred -------------------EEEeCCEEEEecCccc
Confidence 9999999999997654
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-52 Score=406.27 Aligned_cols=238 Identities=31% Similarity=0.563 Sum_probs=211.2
Q ss_pred eEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-C----CccEEEECCEECCCCCCh
Q 016804 91 LIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-P----DKGEVYIRGRKRAGLISD 161 (382)
Q Consensus 91 ~I~~~nvs~~yg~----~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~-p----~sG~I~i~G~~i~~~~~~ 161 (382)
+|+++||+.+|.. .++++||||+|++||++||||.|||||||+.+.|+|+++ | .+|+|.|+|+++..+..+
T Consensus 1 lL~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred CceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence 3789999999953 479999999999999999999999999999999999998 4 579999999998776443
Q ss_pred h--hhccceEEEEecCC--CCCCCCCHHHHHHhhHhhcCCC-CHHHHHHHHHHHHHHcCCcc---cccCCCCCCChHHHH
Q 016804 162 E--EISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKM-RDEQISELVKENLAAVGLKG---VEDRLPSELSGGMKK 233 (382)
Q Consensus 162 ~--~~~~~~Ig~V~Q~~--~l~~~lTV~eni~~~~~~~~~~-~~~~~~~~v~~~L~~~gL~~---~~~~~~~~LSGGqrQ 233 (382)
. ..+...|+||||+| .|.|.+||.+.+...+..+... .+++..+++.++|+.+|+.+ ..+.||++|||||||
T Consensus 81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQ 160 (316)
T COG0444 81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQ 160 (316)
T ss_pred HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHH
Confidence 2 23445799999997 5899999999998887655544 46677888999999999974 679999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 234 RVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 234 RVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
||.||.||+. +|++||.||||++||...+.+++++|++++++.+ +|+|+||||+..+.++||||
T Consensus 161 RV~IAmala~-------~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~---------~aiilITHDl~vva~~aDri 224 (316)
T COG0444 161 RVMIAMALAL-------NPKLLIADEPTTALDVTVQAQILDLLKELQREKG---------TALILITHDLGVVAEIADRV 224 (316)
T ss_pred HHHHHHHHhC-------CCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcC---------CEEEEEeCCHHHHHHhcceE
Confidence 9999999996 6999999999999999999999999999988532 69999999999999999988
Q ss_pred ccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 314 CLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
+||+.|+||+.|++++++ ++.|||++.+++.
T Consensus 225 ------------------------------~VMYaG~iVE~g~~~~i~~~P~HPYT~~Ll~s 256 (316)
T COG0444 225 ------------------------------AVMYAGRIVEEGPVEEIFKNPKHPYTRGLLNS 256 (316)
T ss_pred ------------------------------EEEECcEEEEeCCHHHHhcCCCChHHHHHHHh
Confidence 999999999999998865 6899999998874
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-52 Score=420.95 Aligned_cols=236 Identities=34% Similarity=0.568 Sum_probs=203.9
Q ss_pred eEEEEeEEEEeCCee------------------------eeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc
Q 016804 91 LIDCRNVYKSFGEKH------------------------ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG 146 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~------------------------iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG 146 (382)
+|+++||+|.||..+ +|+|+||+|++||+++|+||||||||||+|+|+|+++|++|
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG 83 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG 83 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCC
Confidence 577777777776543 89999999999999999999999999999999999999999
Q ss_pred EEEECCEECCCCCChh--hhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC
Q 016804 147 EVYIRGRKRAGLISDE--EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP 224 (382)
Q Consensus 147 ~I~i~G~~i~~~~~~~--~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~ 224 (382)
+|+++|+++....... ...+.++||+||++.+|+++||+||+.++... .+...++..+++.++++.+||.++.+++|
T Consensus 84 ~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~-~~~~~~~~~~~~~e~L~~~gL~~~~~~~~ 162 (400)
T PRK10070 84 QVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMEL-AGINAEERREKALDALRQVGLENYAHSYP 162 (400)
T ss_pred EEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCCChhhhcCc
Confidence 9999999976532211 11233699999999999999999999987532 23444555677889999999999999999
Q ss_pred CCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCH
Q 016804 225 SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQH 303 (382)
Q Consensus 225 ~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl 303 (382)
.+|||||||||+|||||+. +|++|||||||++||+.++..+++.|++++++ + +|||++|||+
T Consensus 163 ~~LSgGq~QRv~LArAL~~-------~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g----------~TIIivTHd~ 225 (400)
T PRK10070 163 DELSGGMRQRVGLARALAI-------NPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQ----------RTIVFISHDL 225 (400)
T ss_pred ccCCHHHHHHHHHHHHHhc-------CCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCC----------CeEEEEECCH
Confidence 9999999999999999997 69999999999999999999999999999764 4 5999999999
Q ss_pred HHHHHhhchhccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 304 STIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 304 ~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
+++.++|||+ ++|++|++++.|+++++. .+.++++..|+.+
T Consensus 226 ~~~~~~~Dri------------------------------~vL~~G~i~~~g~~~~l~~~~~~~~v~~~~~~ 267 (400)
T PRK10070 226 DEAMRIGDRI------------------------------AIMQNGEVVQVGTPDEILNNPANDYVRTFFRG 267 (400)
T ss_pred HHHHHhCCEE------------------------------EEEECCEEEecCCHHHHHhCcccHHHHHHHhc
Confidence 9999999988 999999999999888875 4567788888765
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-52 Score=421.56 Aligned_cols=224 Identities=30% Similarity=0.486 Sum_probs=198.9
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
++|+++||+++|+++++|+++||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.... .... +++|
T Consensus 2 ~~L~~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~-~~~~-~~~i 79 (402)
T PRK09536 2 PMIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALS-ARAA-SRRV 79 (402)
T ss_pred ceEEEeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCC-HHHH-hcce
Confidence 4799999999999999999999999999999999999999999999999999999999999999876532 2222 3369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcC-CCC--HHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENS-KMR--DEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT 246 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~-~~~--~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~ 246 (382)
|||+|++.+++.+||+||+.++...+. ... ..+..+++.++++.+|+.++.++++.+|||||||||+|||||++
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~--- 156 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQ--- 156 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHc---
Confidence 999999999888999999988653221 111 23446678999999999999999999999999999999999997
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchhee
Q 016804 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVI 326 (382)
Q Consensus 247 ~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~ 326 (382)
+|++|||||||+|||+.++.+++++|+++++++ .|||++|||++++.++|||+
T Consensus 157 ----~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g----------~TIIivsHdl~~~~~~adri------------- 209 (402)
T PRK09536 157 ----ATPVLLLDEPTASLDINHQVRTLELVRRLVDDG----------KTAVAAIHDLDLAARYCDEL------------- 209 (402)
T ss_pred ----CCCEEEEECCcccCCHHHHHHHHHHHHHHHhcC----------CEEEEEECCHHHHHHhCCEE-------------
Confidence 699999999999999999999999999998765 59999999999999999988
Q ss_pred hhccCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 327 ILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 327 ~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|++++.|+++++..
T Consensus 210 -----------------i~l~~G~iv~~G~~~ev~~ 228 (402)
T PRK09536 210 -----------------VLLADGRVRAAGPPADVLT 228 (402)
T ss_pred -----------------EEEECCEEEEecCHHHHhC
Confidence 9999999999999888764
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-52 Score=384.08 Aligned_cols=212 Identities=36% Similarity=0.602 Sum_probs=189.0
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
|+++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... . .+.+++|
T Consensus 1 i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~-~---~~~~i~~ 76 (213)
T cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLP-P---KDRDIAM 76 (213)
T ss_pred CEEEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCC-c---ccceEEE
Confidence 47899999999889999999999999999999999999999999999999999999999999875321 1 1236999
Q ss_pred EecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCC
Q 016804 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~ 251 (382)
+||++.+|+..|++||+.++.... ....++..+++.++++.+|+.+..++++.+||||||||++|||||+. +
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~-------~ 148 (213)
T cd03301 77 VFQNYALYPHMTVYDNIAFGLKLR-KVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVR-------E 148 (213)
T ss_pred EecChhhccCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhc-------C
Confidence 999999998899999998864322 23445556778899999999988999999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhcc
Q 016804 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGA 330 (382)
Q Consensus 252 P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~ 330 (382)
|++|||||||+|||+.++..+.++|++++++ + .|+|++|||++++.++||++
T Consensus 149 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tvi~~sH~~~~~~~~~d~i----------------- 201 (213)
T cd03301 149 PKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLG----------TTTIYVTHDQVEAMTMADRI----------------- 201 (213)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHhcCeE-----------------
Confidence 9999999999999999999999999999865 5 59999999999999999988
Q ss_pred CCCCcccccccEEEEEeCCeEEEEe
Q 016804 331 VAPDKEVFFIYRLIFLYEGKIVWQG 355 (382)
Q Consensus 331 ~~~~~~~~~~~~ii~l~~G~i~~~g 355 (382)
++|++|++++.|
T Consensus 202 -------------~~l~~g~~~~~g 213 (213)
T cd03301 202 -------------AVMNDGQIQQIG 213 (213)
T ss_pred -------------EEEECCEEEecC
Confidence 999999998865
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-52 Score=403.19 Aligned_cols=222 Identities=35% Similarity=0.588 Sum_probs=193.5
Q ss_pred eEEEEeEEEEeCC-----eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhc
Q 016804 91 LIDCRNVYKSFGE-----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165 (382)
Q Consensus 91 ~I~~~nvs~~yg~-----~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~ 165 (382)
.|+++||+|+|++ +++|+||||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++..........
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 3899999999974 46999999999999999999999999999999999999999999999999875421111112
Q ss_pred cceEEEEecCC--CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc--ccccCCCCCCChHHHHHHHHHHHH
Q 016804 166 GLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK--GVEDRLPSELSGGMKKRVALARSI 241 (382)
Q Consensus 166 ~~~Ig~V~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~--~~~~~~~~~LSGGqrQRVaIArAL 241 (382)
+.+||||||++ .+|+ .||+||+.++... .+..+++..+++.++++.+||. ++.++++.+||||||||++|||||
T Consensus 82 ~~~ig~v~q~~~~~~~~-~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL 159 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFE-ETIEKDIAFGPIN-LGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVV 159 (287)
T ss_pred hhceEEEecCchhcccc-ccHHHHHHhHHHH-CCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHH
Confidence 34699999997 3454 7999999986532 2355666777889999999997 678999999999999999999999
Q ss_pred hcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccc
Q 016804 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFG 320 (382)
Q Consensus 242 ~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~ 320 (382)
+. +|++|||||||+|||+.++.++.++|++++++ | .|||++|||++++.++||||
T Consensus 160 ~~-------~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g----------~tvi~vtHd~~~~~~~~drv------- 215 (287)
T PRK13637 160 AM-------EPKILILDEPTAGLDPKGRDEILNKIKELHKEYN----------MTIILVSHSMEDVAKLADRI------- 215 (287)
T ss_pred Hc-------CCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEE-------
Confidence 97 69999999999999999999999999999875 5 59999999999999999988
Q ss_pred cchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 321 HIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.|+++++.
T Consensus 216 -----------------------~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 216 -----------------------IVMNKGKCELQGTPREVF 233 (287)
T ss_pred -----------------------EEEECCEEEEECCHHHHH
Confidence 999999999999888764
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-53 Score=389.32 Aligned_cols=220 Identities=32% Similarity=0.575 Sum_probs=202.1
Q ss_pred eEEEEeEEEEeCCee-eeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 91 LIDCRNVYKSFGEKH-ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~-iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
||++.+++|+|+..+ +++||||++++||++||+|||||||||+||+|++|+.|++|.|+++|.|.... ....+++|
T Consensus 1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~---p~~vrr~I 77 (245)
T COG4555 1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRD---PSFVRRKI 77 (245)
T ss_pred CeeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccC---hHHHhhhc
Confidence 689999999999866 99999999999999999999999999999999999999999999999986542 12234479
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
|.+|.+..+|..||++|||.|....+ ++...+++.+++++.+.++|.+.++++..+||.||||||+|||||++
T Consensus 78 GVl~~e~glY~RlT~rEnl~~Fa~L~-~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh------ 150 (245)
T COG4555 78 GVLFGERGLYARLTARENLKYFARLN-GLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVH------ 150 (245)
T ss_pred ceecCCcChhhhhhHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhc------
Confidence 99998888999999999999876543 47778889999999999999999999999999999999999999998
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
+|++++|||||+|||..+++.+.+.|++++.+| +++|++||+|++++.+||||
T Consensus 151 -~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~eg----------r~viFSSH~m~EvealCDrv---------------- 203 (245)
T COG4555 151 -DPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEG----------RAVIFSSHIMQEVEALCDRV---------------- 203 (245)
T ss_pred -CCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCC----------cEEEEecccHHHHHHhhheE----------------
Confidence 599999999999999999999999999998887 59999999999999999988
Q ss_pred cCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 330 AVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|+++..|+.+++.
T Consensus 204 --------------ivlh~Gevv~~gs~~~l~ 221 (245)
T COG4555 204 --------------IVLHKGEVVLEGSIEALD 221 (245)
T ss_pred --------------EEEecCcEEEcCCHHHHH
Confidence 999999999999988764
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-52 Score=386.45 Aligned_cols=214 Identities=34% Similarity=0.631 Sum_probs=189.7
Q ss_pred eEEEEeEEEEeCCe----eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhcc
Q 016804 91 LIDCRNVYKSFGEK----HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (382)
Q Consensus 91 ~I~~~nvs~~yg~~----~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~ 166 (382)
||+++||+++|+++ ++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... .... +
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~-~ 77 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKE--PAEA-R 77 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccC--HHHH-H
Confidence 48899999999876 799999999999999999999999999999999999999999999999987531 2222 3
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCC
Q 016804 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT 246 (382)
Q Consensus 167 ~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~ 246 (382)
.+++|+||++.+|+.+||+||+.+....+ +....+..+++.++++.+|+.+..++.+.+||||||||++|||||+.
T Consensus 78 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~--- 153 (218)
T cd03266 78 RRLGFVSDSTGLYDRLTARENLEYFAGLY-GLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVH--- 153 (218)
T ss_pred hhEEEecCCcccCcCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhc---
Confidence 36999999999999899999998754322 23445556778899999999998999999999999999999999997
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchhee
Q 016804 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVI 326 (382)
Q Consensus 247 ~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~ 326 (382)
+|++|||||||++||+.++..+.++|+++.+++ .|+|++|||++++..+|||+
T Consensus 154 ----~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tii~~tH~~~~~~~~~d~i------------- 206 (218)
T cd03266 154 ----DPPVLLLDEPTTGLDVMATRALREFIRQLRALG----------KCILFSTHIMQEVERLCDRV------------- 206 (218)
T ss_pred ----CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHhcCEE-------------
Confidence 699999999999999999999999999997665 59999999999999999988
Q ss_pred hhccCCCCcccccccEEEEEeCCeEEEEe
Q 016804 327 ILGAVAPDKEVFFIYRLIFLYEGKIVWQG 355 (382)
Q Consensus 327 ~~~~~~~~~~~~~~~~ii~l~~G~i~~~g 355 (382)
++|++|++++.|
T Consensus 207 -----------------~~l~~G~i~~~~ 218 (218)
T cd03266 207 -----------------VVLHRGRVVYEG 218 (218)
T ss_pred -----------------EEEECCEEeecC
Confidence 999999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-52 Score=387.00 Aligned_cols=219 Identities=31% Similarity=0.527 Sum_probs=189.9
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
|+++||+++|+++++|+++||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++..... ....+.+|+|
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~-~~~~~~~i~~ 79 (222)
T cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPP-HERARAGIGY 79 (222)
T ss_pred CEEeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCH-HHHHhcCeEE
Confidence 578999999998899999999999999999999999999999999999999999999999998754322 1222336999
Q ss_pred EecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHc-CCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAV-GLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~-gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
+||++.+|+.+|++||+.+...... ..+..+.+.++++.+ ++.+..++++.+||||||||++|||||+.
T Consensus 80 ~~q~~~~~~~~t~~~~l~~~~~~~~---~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~------- 149 (222)
T cd03224 80 VPEGRRIFPELTVEENLLLGAYARR---RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMS------- 149 (222)
T ss_pred eccccccCCCCcHHHHHHHHhhhcC---chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhc-------
Confidence 9999999999999999988653221 223345567788888 57888899999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhcc
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGA 330 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~ 330 (382)
+|++|||||||+|||+.++..+.++|+++++++ .|+|++|||++++.++||++
T Consensus 150 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tiii~sH~~~~~~~~~d~i----------------- 202 (222)
T cd03224 150 RPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEG----------VTILLVEQNARFALEIADRA----------------- 202 (222)
T ss_pred CCCEEEECCCcccCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHhccEE-----------------
Confidence 699999999999999999999999999997765 59999999999999999988
Q ss_pred CCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 331 VAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 331 ~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.|+++++.
T Consensus 203 -------------~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 203 -------------YVLERGRVVLEGTAAELL 220 (222)
T ss_pred -------------EEeeCCeEEEeCCHHHHh
Confidence 999999999998766543
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-52 Score=391.02 Aligned_cols=223 Identities=35% Similarity=0.550 Sum_probs=191.7
Q ss_pred EEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCCh-hhhccceE
Q 016804 92 IDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD-EEISGLRI 169 (382)
Q Consensus 92 I~~~nvs~~yg~-~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~-~~~~~~~I 169 (382)
|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...... ....+.++
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 80 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI 80 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhcc
Confidence 478999999987 7899999999999999999999999999999999999999999999999987543210 11122369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhc-------CCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHh
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYEN-------SKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSII 242 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~-------~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~ 242 (382)
+|+||++.+|+.+||+||+.++.... .+.......+++.++++.+++.+..++++.+|||||||||+|||||+
T Consensus 81 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~ 160 (241)
T cd03256 81 GMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALM 160 (241)
T ss_pred EEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHh
Confidence 99999999999899999998754210 01112334566788999999998899999999999999999999999
Q ss_pred cCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccccc
Q 016804 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGH 321 (382)
Q Consensus 243 ~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~ 321 (382)
. +|++|||||||+|||+.++..+.+.|+++.++ | .|||++|||++++..+||++
T Consensus 161 ~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tii~~tH~~~~~~~~~d~v-------- 215 (241)
T cd03256 161 Q-------QPKLILADEPVASLDPASSRQVMDLLKRINREEG----------ITVIVSLHQVDLAREYADRI-------- 215 (241)
T ss_pred c-------CCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEE--------
Confidence 7 69999999999999999999999999999765 5 59999999999999999988
Q ss_pred chheehhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 322 IDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.|+++++.
T Consensus 216 ----------------------~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 216 ----------------------VGLKDGRIVFDGPPAELT 233 (241)
T ss_pred ----------------------EEEECCEEEeecCHHHhh
Confidence 999999999999777753
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-53 Score=383.95 Aligned_cols=237 Identities=34% Similarity=0.536 Sum_probs=213.3
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCCh--------
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD-------- 161 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~-------- 161 (382)
+.|+++|+.|+||...+|++|||+-++|+++.|||.|||||||+||||+=|..|+.|+|.++|+.+.-....
T Consensus 5 ~~l~v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad 84 (256)
T COG4598 5 NALEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPAD 84 (256)
T ss_pred cceehhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCC
Confidence 458999999999999999999999999999999999999999999999999999999999999986421110
Q ss_pred -hh--hccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHH
Q 016804 162 -EE--ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALA 238 (382)
Q Consensus 162 -~~--~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIA 238 (382)
.. +.+.+.|+|||+.+|+.+|||.||+.......-+.++.+..++++.+|.++|+.+..+.||..||||||||++||
T Consensus 85 ~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIA 164 (256)
T COG4598 85 KRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIA 164 (256)
T ss_pred HHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHH
Confidence 11 112359999999999999999999977543334567888889999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccc
Q 016804 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQI 318 (382)
Q Consensus 239 rAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~ 318 (382)
|||+ ++|+++|+|||||+|||+..-++++.|++|+++| +|+++|||.|.++++.+.+|
T Consensus 165 RaLa-------meP~vmLFDEPTSALDPElVgEVLkv~~~LAeEg----------rTMv~VTHEM~FAR~Vss~v----- 222 (256)
T COG4598 165 RALA-------MEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEG----------RTMVVVTHEMGFARDVSSHV----- 222 (256)
T ss_pred HHHh-------cCCceEeecCCcccCCHHHHHHHHHHHHHHHHhC----------CeEEEEeeehhHHHhhhhhe-----
Confidence 9997 5899999999999999999999999999999998 59999999999999999988
Q ss_pred cccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHc
Q 016804 319 FGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFAS 373 (382)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~ 373 (382)
++|++|+|.++|+|++++ ++..+.+++|++
T Consensus 223 -------------------------~fLh~G~iEE~G~P~qvf~nP~S~RlkqFls 253 (256)
T COG4598 223 -------------------------IFLHQGKIEEEGPPEQVFGNPQSPRLKQFLS 253 (256)
T ss_pred -------------------------EEeecceecccCChHHHhcCCCCHHHHHHHH
Confidence 999999999999999976 678899999987
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-52 Score=393.17 Aligned_cols=223 Identities=34% Similarity=0.536 Sum_probs=192.2
Q ss_pred eEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChh-hhccce
Q 016804 91 LIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE-EISGLR 168 (382)
Q Consensus 91 ~I~~~nvs~~yg-~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~-~~~~~~ 168 (382)
||+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++....... ...+.+
T Consensus 1 ~l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred CeEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 588999999998 778999999999999999999999999999999999999999999999999875432111 111336
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhc-------CCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHH
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYEN-------SKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSI 241 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~-------~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL 241 (382)
++|+||++.+|+.+||+||+.++.... ......+..+++.++++.+|+.+..++++.+|||||||||+|||||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al 160 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARAL 160 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHH
Confidence 999999999999899999998753211 0111233456788899999999889999999999999999999999
Q ss_pred hcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccc
Q 016804 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFG 320 (382)
Q Consensus 242 ~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~ 320 (382)
+. +|++|||||||+|||+.++..+.++|+++.++ + +|+|++|||++++.++||++
T Consensus 161 ~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tiii~tH~~~~~~~~~d~v------- 216 (243)
T TIGR02315 161 AQ-------QPDLILADEPIASLDPKTSKQVMDYLKRINKEDG----------ITVIINLHQVDLAKKYADRI------- 216 (243)
T ss_pred hc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHhcCeE-------
Confidence 97 69999999999999999999999999999765 4 59999999999999999988
Q ss_pred cchheehhccCCCCcccccccEEEEEeCCeEEEEeccccc
Q 016804 321 HIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEF 360 (382)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~ 360 (382)
++|++|++++.|+++++
T Consensus 217 -----------------------~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 217 -----------------------VGLKAGEIVFDGAPSEL 233 (243)
T ss_pred -----------------------EEEECCEEEecCCHHHh
Confidence 99999999999987775
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-52 Score=409.10 Aligned_cols=238 Identities=24% Similarity=0.365 Sum_probs=201.6
Q ss_pred ceEEEEeEEEEe----CCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC----CCccEEEECCEECCCCCCh
Q 016804 90 VLIDCRNVYKSF----GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA----PDKGEVYIRGRKRAGLISD 161 (382)
Q Consensus 90 ~~I~~~nvs~~y----g~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~----p~sG~I~i~G~~i~~~~~~ 161 (382)
++|+++||+++| +...+|+||||+|.+||++||+|+||||||||+++|+|+++ |++|+|+++|+++......
T Consensus 2 ~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 2 PLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred CeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence 369999999999 44679999999999999999999999999999999999997 5899999999998654322
Q ss_pred hh--hccceEEEEecCCC--CCCCCCHHHHHHhhHhhc--CC---CCHHHHHHHHHHHHHHcCCcc---cccCCCCCCCh
Q 016804 162 EE--ISGLRIGLVFQSAA--LFDSLTVRENVGFLLYEN--SK---MRDEQISELVKENLAAVGLKG---VEDRLPSELSG 229 (382)
Q Consensus 162 ~~--~~~~~Ig~V~Q~~~--l~~~lTV~eni~~~~~~~--~~---~~~~~~~~~v~~~L~~~gL~~---~~~~~~~~LSG 229 (382)
.. ..+.+|+||||++. +++.+||.+|+.+....+ .+ ....+..+++.++|+.+||.+ ..+++|.+|||
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSg 161 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTE 161 (330)
T ss_pred HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCH
Confidence 21 12236999999985 678899999997643211 11 112344567889999999974 46899999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHH
Q 016804 230 GMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRR 308 (382)
Q Consensus 230 GqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~ 308 (382)
||||||+|||||+. +|+||||||||++||+.++.++.++|+++.++ | .|+|+||||++.+.+
T Consensus 162 G~~QRv~iArAL~~-------~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g----------~tii~itHdl~~v~~ 224 (330)
T PRK15093 162 GECQKVMIAIALAN-------QPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNN----------TTILLISHDLQMLSQ 224 (330)
T ss_pred HHHHHHHHHHHHHC-------CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcC----------CEEEEEECCHHHHHH
Confidence 99999999999997 69999999999999999999999999999875 4 599999999999999
Q ss_pred hhchhccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 309 AVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 309 ~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
+|||| ++|++|+|++.|++.++. .+.+++++.++..
T Consensus 225 ~~dri------------------------------~vm~~G~ive~g~~~~i~~~p~~~y~~~ll~~ 261 (330)
T PRK15093 225 WADKI------------------------------NVLYCGQTVETAPSKELVTTPHHPYTQALIRA 261 (330)
T ss_pred hCCEE------------------------------EEEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence 99988 999999999999888875 5678998887764
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-51 Score=389.71 Aligned_cols=232 Identities=36% Similarity=0.598 Sum_probs=200.1
Q ss_pred EEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 92 IDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 92 I~~~nvs~~yg~-~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
|+++||+++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..... ... +.+++
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~-~~~-~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDP-VEL-RRKIG 78 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCCh-HHh-hcceE
Confidence 478999999987 789999999999999999999999999999999999999999999999998754322 122 33699
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc--cccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG--VEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~--~~~~~~~~LSGGqrQRVaIArAL~~~~~~~ 248 (382)
|+||++.+|+.+|++||+.++... .+....+..+++.++++.+++.. +.++++.+|||||||||+|||||+.
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~----- 152 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKL-LKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAA----- 152 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhc-----
Confidence 999999999889999999876432 22344455667889999999985 7899999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheeh
Q 016804 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVII 327 (382)
Q Consensus 249 a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~ 327 (382)
+|++|||||||+|||+.++..+.+.|++++++ | .|+|++||+++++..+|||+
T Consensus 153 --~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g----------~tvii~sH~~~~~~~~~d~i-------------- 206 (242)
T cd03295 153 --DPPLLLMDEPFGALDPITRDQLQEEFKRLQQELG----------KTIVFVTHDIDEAFRLADRI-------------- 206 (242)
T ss_pred --CCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcC----------CEEEEEecCHHHHHHhCCEE--------------
Confidence 69999999999999999999999999999865 5 59999999999999999988
Q ss_pred hccCCCCcccccccEEEEEeCCeEEEEeccccccc-CCCHHHHHHHc
Q 016804 328 LGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFAS 373 (382)
Q Consensus 328 ~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~ 373 (382)
++|++|++++.|+++++.. ..++....+..
T Consensus 207 ----------------~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~ 237 (242)
T cd03295 207 ----------------AIMKNGEIVQVGTPDEILRSPANDFVAEFVG 237 (242)
T ss_pred ----------------EEEECCEEEEecCHHHHHcCCCChHHHHHhC
Confidence 9999999999998777643 34566666654
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-51 Score=392.06 Aligned_cols=236 Identities=35% Similarity=0.526 Sum_probs=202.6
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCC-------C--h-
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLI-------S--D- 161 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~-------~--~- 161 (382)
|+++||+++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..+. . .
T Consensus 1 i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~ 80 (252)
T TIGR03005 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEK 80 (252)
T ss_pred CEEEEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchh
Confidence 47899999999889999999999999999999999999999999999999999999999999875321 0 0
Q ss_pred -hhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHH
Q 016804 162 -EEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARS 240 (382)
Q Consensus 162 -~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArA 240 (382)
....+.+++|+||++.+|+.+|+.||+.++.....+....+..+.+.++++.+|+.+..++.+.+||||||||++||||
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lara 160 (252)
T TIGR03005 81 HLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARA 160 (252)
T ss_pred HHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHH
Confidence 0112336999999999998899999998753222223444556678899999999988999999999999999999999
Q ss_pred HhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccc
Q 016804 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIF 319 (382)
Q Consensus 241 L~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~ 319 (382)
|+. +|++|||||||+|||+.++..+.++|+++.++ + .|+|++|||++++.++|||+
T Consensus 161 l~~-------~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~----------~tiiivsH~~~~~~~~~d~i------ 217 (252)
T TIGR03005 161 LAM-------RPKVMLFDEVTSALDPELVGEVLNVIRRLASEHD----------LTMLLVTHEMGFAREFADRV------ 217 (252)
T ss_pred HHc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------cEEEEEeCCHHHHHHhcCEE------
Confidence 997 69999999999999999999999999999875 5 59999999999999999988
Q ss_pred ccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 320 GHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
++|++|++++.|+.+++. .+.++.+..++.+
T Consensus 218 ------------------------~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 249 (252)
T TIGR03005 218 ------------------------CFFDKGRIVEQGKPDEIFRQPKEERTREFLSK 249 (252)
T ss_pred ------------------------EEEECCEEEEeCCHHHHhcCCCcHHHHHHHhh
Confidence 999999999999887765 3456777777653
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-51 Score=391.98 Aligned_cols=237 Identities=28% Similarity=0.461 Sum_probs=201.0
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEECCCCCChhh
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLISDEE 163 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p-----~sG~I~i~G~~i~~~~~~~~ 163 (382)
.++|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++........
T Consensus 5 ~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 5 EAIIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred CceEEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence 3579999999999888899999999999999999999999999999999999997 58999999998642111111
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCC----cccccCCCCCCChHHHHHHHHHH
Q 016804 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL----KGVEDRLPSELSGGMKKRVALAR 239 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL----~~~~~~~~~~LSGGqrQRVaIAr 239 (382)
..+.+|+|+||++.+|+ +||+||+.++.............+++.++++.+++ .+..++++.+|||||||||+|||
T Consensus 85 ~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~lar 163 (254)
T PRK14273 85 ELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIAR 163 (254)
T ss_pred HHhhceEEEeecccccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHH
Confidence 12336999999999885 89999998865322212334456678889999987 35678899999999999999999
Q ss_pred HHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccc
Q 016804 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIF 319 (382)
Q Consensus 240 AL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~ 319 (382)
||+. +|++|||||||+|||+.++..++++|+++++ + .|+|++||+++++.++|||+
T Consensus 164 al~~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~----------~tvii~sH~~~~~~~~~d~i------ 219 (254)
T PRK14273 164 TLAI-------EPNVILMDEPTSALDPISTGKIEELIINLKE-S----------YTIIIVTHNMQQAGRISDRT------ 219 (254)
T ss_pred HHHc-------CCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-C----------CEEEEEeCCHHHHHHhCCEE------
Confidence 9997 6999999999999999999999999999964 4 49999999999999999988
Q ss_pred ccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 320 GHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
++|++|++++.|++.++. .+.++.+..++.+
T Consensus 220 ------------------------~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 251 (254)
T PRK14273 220 ------------------------AFFLNGCIEEESSTDELFFNPKNTKTEEYISG 251 (254)
T ss_pred ------------------------EEEECCEEEEeCCHHHHHhCCCChHHHHhhcc
Confidence 999999999999888875 5678888887764
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-51 Score=384.02 Aligned_cols=211 Identities=39% Similarity=0.625 Sum_probs=187.7
Q ss_pred EEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccc
Q 016804 92 IDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (382)
Q Consensus 92 I~~~nvs~~yg~----~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~ 167 (382)
|+++|++++|++ +++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... +.
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-------~~ 73 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGP-------GP 73 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-------cC
Confidence 478999999987 7899999999999999999999999999999999999999999999999986421 23
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 016804 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (382)
Q Consensus 168 ~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~ 247 (382)
+++|+||++.+|+.+|++||+.+..... +.......+.+.++++.+++.+..++++.+||||||||++|||||+.
T Consensus 74 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~---- 148 (220)
T cd03293 74 DRGYVFQQDALLPWLTVLDNVALGLELQ-GVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAV---- 148 (220)
T ss_pred cEEEEecccccccCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHc----
Confidence 6999999999998899999998865322 23344455678899999999988999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchhee
Q 016804 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVI 326 (382)
Q Consensus 248 ~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~ 326 (382)
+|++|||||||+|||+.++..+.++|+++.++ + .|+|++||+++++..+||++
T Consensus 149 ---~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~----------~tiii~sH~~~~~~~~~d~i------------- 202 (220)
T cd03293 149 ---DPDVLLLDEPFSALDALTREQLQEELLDIWRETG----------KTVLLVTHDIDEAVFLADRV------------- 202 (220)
T ss_pred ---CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcC----------CEEEEEecCHHHHHHhCCEE-------------
Confidence 69999999999999999999999999999654 4 59999999999999999988
Q ss_pred hhccCCCCcccccccEEEEEe--CCeEEEEecc
Q 016804 327 ILGAVAPDKEVFFIYRLIFLY--EGKIVWQGMT 357 (382)
Q Consensus 327 ~~~~~~~~~~~~~~~~ii~l~--~G~i~~~g~~ 357 (382)
++|+ +|+++++++.
T Consensus 203 -----------------~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 203 -----------------VVLSARPGRIVAEVEV 218 (220)
T ss_pred -----------------EEEECCCCEEEEEEEe
Confidence 9999 7999988753
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-51 Score=387.60 Aligned_cols=224 Identities=29% Similarity=0.481 Sum_probs=195.0
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
++|+++|++++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... .....+.++
T Consensus 1 ~~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~-~~~~~~~~i 79 (242)
T TIGR03411 1 PILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLP-EHQIARAGI 79 (242)
T ss_pred CeEEEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCC-HHHHHhcCe
Confidence 3689999999998888999999999999999999999999999999999999999999999999875432 221223369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcC-------CCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHh
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENS-------KMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSII 242 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~-------~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~ 242 (382)
+|+||++.+|+.+||+||+.+...... ....++..+++.++++.+|+.+..++.+.+|||||||||+|||||+
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~ 159 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLM 159 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHh
Confidence 999999999999999999988542111 0122344567889999999998889999999999999999999999
Q ss_pred cCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccc
Q 016804 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHI 322 (382)
Q Consensus 243 ~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~ 322 (382)
. +|++|||||||+|||+.++..+.++|+++.+ + .|+|++||+++++.++|||+
T Consensus 160 ~-------~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~----------~tii~~sH~~~~~~~~~d~i--------- 212 (242)
T TIGR03411 160 Q-------DPKLLLLDEPVAGMTDEETEKTAELLKSLAG-K----------HSVVVVEHDMEFVRSIADKV--------- 212 (242)
T ss_pred c-------CCCEEEecCCccCCCHHHHHHHHHHHHHHhc-C----------CEEEEEECCHHHHHHhCCEE---------
Confidence 7 6999999999999999999999999999976 4 49999999999999999988
Q ss_pred hheehhccCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 323 DVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|++++.|++.++..
T Consensus 213 ---------------------~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 213 ---------------------TVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred ---------------------EEEECCeEEeeCCHHHHhc
Confidence 9999999999998777753
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-52 Score=384.73 Aligned_cols=203 Identities=41% Similarity=0.631 Sum_probs=176.4
Q ss_pred EEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChh--hhc
Q 016804 92 IDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE--EIS 165 (382)
Q Consensus 92 I~~~nvs~~yg~----~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~--~~~ 165 (382)
|+++||+++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++....... ...
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 478999999986 78999999999999999999999999999999999999999999999999875432111 112
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCC
Q 016804 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (382)
Q Consensus 166 ~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~ 245 (382)
+.+++|+||++.+|+.+||+||+.++.... +....+..+++.++++.+||.+..++++.+|||||||||+|||||+.
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~-- 157 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLA-GVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALAN-- 157 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHcc--
Confidence 236999999999999899999999865322 23334445678899999999988899999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 246 ~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|++|||||||+|||+.++..+.++|+++.++ + +|+|++|||++++. +||++
T Consensus 158 -----~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~----------~tii~~sH~~~~~~-~~d~v 210 (218)
T cd03255 158 -----DPKIILADEPTGNLDSETGKEVMELLRELNKEAG----------TTIVVVTHDPELAE-YADRI 210 (218)
T ss_pred -----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC----------CeEEEEECCHHHHh-hhcEE
Confidence 69999999999999999999999999999873 5 59999999999987 88887
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-52 Score=382.11 Aligned_cols=205 Identities=40% Similarity=0.635 Sum_probs=178.8
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
|+++||+++|+++++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..........+.+|+|
T Consensus 1 l~~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 80 (213)
T cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGM 80 (213)
T ss_pred CEEEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceE
Confidence 47899999999889999999999999999999999999999999999999999999999999864211111112336999
Q ss_pred EecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCC
Q 016804 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~ 251 (382)
+||++.+|+.+|++||+.++.....+...++..+++.++++.+|+.+..++++.+||||||||++|||||+. +
T Consensus 81 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~-------~ 153 (213)
T cd03262 81 VFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAM-------N 153 (213)
T ss_pred EecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhc-------C
Confidence 999999998899999998864222233444556678899999999988999999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 252 P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
|++|||||||+|||+.++..+.++|+++++++ .|+|++||+++++.++||++
T Consensus 154 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~----------~tvi~~sh~~~~~~~~~d~i 205 (213)
T cd03262 154 PKVMLFDEPTSALDPELVGEVLDVMKDLAEEG----------MTMVVVTHEMGFAREVADRV 205 (213)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHhCCEE
Confidence 99999999999999999999999999998765 59999999999999999988
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-52 Score=384.73 Aligned_cols=217 Identities=35% Similarity=0.552 Sum_probs=190.8
Q ss_pred EEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 92 IDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 92 I~~~nvs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... ... .+.++
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~-~~~~i 77 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD--RKA-ARQSL 77 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc--hHH-HhhhE
Confidence 578999999987 7899999999999999999999999999999999999999999999999987532 112 22369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
+|+||++.+++.+|+++|+.+..... +....+..+++.++++.++|.+..++++.+||||||||++|||||+.
T Consensus 78 ~~v~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~------ 150 (220)
T cd03263 78 GYCPQFDALFDELTVREHLRFYARLK-GLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIG------ 150 (220)
T ss_pred EEecCcCCccccCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhc------
Confidence 99999999998899999998865322 23444455678899999999988899999999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
+|++|||||||++||+.++..+.+.|++++++ .|+|++||+++.+.++||++
T Consensus 151 -~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-----------~tii~~sH~~~~~~~~~d~i---------------- 202 (220)
T cd03263 151 -GPSVLLLDEPTSGLDPASRRAIWDLILEVRKG-----------RSIILTTHSMDEAEALCDRI---------------- 202 (220)
T ss_pred -CCCEEEECCCCCCCCHHHHHHHHHHHHHHhcC-----------CEEEEEcCCHHHHHHhcCEE----------------
Confidence 69999999999999999999999999999753 49999999999999999988
Q ss_pred cCCCCcccccccEEEEEeCCeEEEEeccccc
Q 016804 330 AVAPDKEVFFIYRLIFLYEGKIVWQGMTHEF 360 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~ 360 (382)
++|++|++++.|+++++
T Consensus 203 --------------~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 203 --------------AIMSDGKLRCIGSPQEL 219 (220)
T ss_pred --------------EEEECCEEEecCCHHHc
Confidence 99999999999876553
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-51 Score=389.58 Aligned_cols=224 Identities=25% Similarity=0.482 Sum_probs=196.4
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
+|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.... .....+.+|+
T Consensus 3 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~~~i~ 81 (241)
T PRK10895 3 TLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLP-LHARARRGIG 81 (241)
T ss_pred eEEEeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC-HHHHHHhCeE
Confidence 699999999999889999999999999999999999999999999999999999999999999875432 2122233699
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
|+||++.+|+.+|+.||+.+..........++..+++.++++.+|+.+..++.+.+|||||||||+|||||+.
T Consensus 82 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~------- 154 (241)
T PRK10895 82 YLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAA------- 154 (241)
T ss_pred EeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhc-------
Confidence 9999999999899999998754222123344455678899999999988899999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhcc
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGA 330 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~ 330 (382)
+|++|||||||++||+.++..+.++|++++++| .|+|++||+++++.++||++
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g----------~tiii~sH~~~~~~~~~d~v----------------- 207 (241)
T PRK10895 155 NPKFILLDEPFAGVDPISVIDIKRIIEHLRDSG----------LGVLITDHNVRETLAVCERA----------------- 207 (241)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcC----------CEEEEEEcCHHHHHHhcCEE-----------------
Confidence 699999999999999999999999999998766 59999999999999999988
Q ss_pred CCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 331 VAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 331 ~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|++++.|+++++..
T Consensus 208 -------------~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 208 -------------YIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred -------------EEEeCCeEEeeCCHHHHhc
Confidence 9999999999998877753
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-51 Score=389.36 Aligned_cols=236 Identities=29% Similarity=0.459 Sum_probs=197.7
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEECCCCCChhh
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-----PDKGEVYIRGRKRAGLISDEE 163 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~-----p~sG~I~i~G~~i~~~~~~~~ 163 (382)
.|+|+++||+++|+++.+|+++||+|++||+++|+||||||||||+|+|+|+.+ |++|+|.++|+++........
T Consensus 4 ~~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (253)
T PRK14242 4 PPKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83 (253)
T ss_pred CcEEEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence 468999999999998889999999999999999999999999999999999974 689999999998753111111
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc----cccCCCCCCChHHHHHHHHHH
Q 016804 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG----VEDRLPSELSGGMKKRVALAR 239 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~----~~~~~~~~LSGGqrQRVaIAr 239 (382)
..+.+|+|+||++.+|+ .||+||+.++.........+...+++.++++.+++.+ ..++.+.+|||||||||+|||
T Consensus 84 ~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lar 162 (253)
T PRK14242 84 ELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIAR 162 (253)
T ss_pred HHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHH
Confidence 12336999999999998 5999999886532221233445667888999999853 468889999999999999999
Q ss_pred HHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccc
Q 016804 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIF 319 (382)
Q Consensus 240 AL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~ 319 (382)
||+. +|++|||||||+|||+.++..+.++|+++.+ + .|||++|||++++.++|||+
T Consensus 163 al~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~----------~tvii~tH~~~~~~~~~d~v------ 218 (253)
T PRK14242 163 ALAV-------EPEVLLMDEPASALDPIATQKIEELIHELKA-R----------YTIIIVTHNMQQAARVSDVT------ 218 (253)
T ss_pred HHhc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-C----------CeEEEEEecHHHHHHhCCEE------
Confidence 9997 6999999999999999999999999999954 4 49999999999999999988
Q ss_pred ccchheehhccCCCCcccccccEEEEEeCCeEEEEeccccccc-CCCHHHHHHHc
Q 016804 320 GHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFAS 373 (382)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~ 373 (382)
++|++|++++.|+++++.. +.+..+.+++.
T Consensus 219 ------------------------~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 249 (253)
T PRK14242 219 ------------------------AFFYMGKLIEVGPTEQIFTRPREKQTEDYIT 249 (253)
T ss_pred ------------------------EEEECCEEEEeCCHHHHHcCCCchHHHHHhh
Confidence 9999999999998888653 44566666654
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-51 Score=385.42 Aligned_cols=218 Identities=34% Similarity=0.599 Sum_probs=188.8
Q ss_pred ceEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhh--
Q 016804 90 VLIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE-- 163 (382)
Q Consensus 90 ~~I~~~nvs~~yg~----~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~-- 163 (382)
++|+++||+++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++........
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHH
Confidence 57999999999974 579999999999999999999999999999999999999999999999998765322211
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhc
Q 016804 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIF 243 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~ 243 (382)
..+.+|+|+||++.+|+.+|++||+.+.... .....++..+++.++++.+|+.+..++++.+||||||||++|||||+.
T Consensus 84 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~ 162 (233)
T PRK11629 84 LRNQKLGFIYQFHHLLPDFTALENVAMPLLI-GKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVN 162 (233)
T ss_pred HHhccEEEEecCcccCCCCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 1123699999999999989999999886432 123344556678899999999988899999999999999999999997
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccc
Q 016804 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHI 322 (382)
Q Consensus 244 ~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~ 322 (382)
+|++|||||||+|||+.++..+.++|++++++ | +|+|++|||++++..+ |++
T Consensus 163 -------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g----------~tvii~sH~~~~~~~~-~~~--------- 215 (233)
T PRK11629 163 -------NPRLVLADEPTGNLDARNADSIFQLLGELNRLQG----------TAFLVVTHDLQLAKRM-SRQ--------- 215 (233)
T ss_pred -------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHhh-CEE---------
Confidence 69999999999999999999999999999764 5 5999999999998865 566
Q ss_pred hheehhccCCCCcccccccEEEEEeCCeEEEEec
Q 016804 323 DVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGM 356 (382)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~ 356 (382)
++|++|+|++.+.
T Consensus 216 ---------------------~~l~~G~i~~~~~ 228 (233)
T PRK11629 216 ---------------------LEMRDGRLTAELS 228 (233)
T ss_pred ---------------------EEEECCEEEEEec
Confidence 8999999998774
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-51 Score=390.77 Aligned_cols=236 Identities=28% Similarity=0.456 Sum_probs=201.0
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEECCCCCChhh
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLISDEE 163 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p-----~sG~I~i~G~~i~~~~~~~~ 163 (382)
.++|+++|++++|+++++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|+++........
T Consensus 10 ~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 89 (258)
T PRK14268 10 QPQIKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVV 89 (258)
T ss_pred ceeEEEeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHH
Confidence 4679999999999988899999999999999999999999999999999999985 89999999998643211111
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc----ccccCCCCCCChHHHHHHHHHH
Q 016804 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALAR 239 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~----~~~~~~~~~LSGGqrQRVaIAr 239 (382)
..+..++|+||++.+|+ +|++||+.+..... +.+.++..+++.++++.+++. +..++++.+|||||||||+|||
T Consensus 90 ~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lar 167 (258)
T PRK14268 90 ELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH-GANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIAR 167 (258)
T ss_pred HHhhhEEEEecCCccCc-ccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHH
Confidence 12336999999999998 89999998865322 234444556688899999983 4578899999999999999999
Q ss_pred HHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccc
Q 016804 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIF 319 (382)
Q Consensus 240 AL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~ 319 (382)
||+. +|++|||||||+|||+.++..+.++|+++.+ + +|+|++|||++++.++|||+
T Consensus 168 al~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~----------~tiiivsH~~~~~~~~~d~i------ 223 (258)
T PRK14268 168 TLAV-------KPKIILFDEPTSALDPISTARIEDLIMNLKK-D----------YTIVIVTHNMQQAARISDYT------ 223 (258)
T ss_pred HHHc-------CCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-C----------CEEEEEECCHHHHHHhCCEE------
Confidence 9997 6999999999999999999999999999964 4 49999999999999999988
Q ss_pred ccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 320 GHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
++|++|++++.|+++++. .+.++.++++..+
T Consensus 224 ------------------------~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~ 255 (258)
T PRK14268 224 ------------------------GFFLMGELIEFGQTRQIFHNPREKSTEDYITG 255 (258)
T ss_pred ------------------------EEEECCEEEEeCCHHHHhcCCCCHHHHHHhhc
Confidence 999999999999888875 4566778877654
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-51 Score=397.68 Aligned_cols=221 Identities=30% Similarity=0.515 Sum_probs=193.0
Q ss_pred ceEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 90 VLIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 90 ~~I~~~nvs~~yg-~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
++|+++||+++|+ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++... ..... +.+
T Consensus 3 ~~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~-~~~ 80 (274)
T PRK13647 3 NIIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAE-NEKWV-RSK 80 (274)
T ss_pred ceEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCC-CHHHH-Hhh
Confidence 3799999999996 56799999999999999999999999999999999999999999999999987542 22222 236
Q ss_pred EEEEecCCC-CCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 016804 169 IGLVFQSAA-LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (382)
Q Consensus 169 Ig~V~Q~~~-l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~ 247 (382)
|||+||++. .+...||.||+.++... .+....+..+++.++++.+||.+..+++|.+|||||||||+|||||+.
T Consensus 81 i~~v~q~~~~~~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~---- 155 (274)
T PRK13647 81 VGLVFQDPDDQVFSSTVWDDVAFGPVN-MGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAM---- 155 (274)
T ss_pred EEEEecChhhhhccCcHHHHHHhhHHH-cCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHc----
Confidence 999999973 33457999999986532 234455566778899999999999999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheeh
Q 016804 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVII 327 (382)
Q Consensus 248 ~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~ 327 (382)
+|++|||||||++||+.++.++.++|++++++| .|||++|||++++.++|||+
T Consensus 156 ---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g----------~tili~tH~~~~~~~~~d~i-------------- 208 (274)
T PRK13647 156 ---DPDVIVLDEPMAYLDPRGQETLMEILDRLHNQG----------KTVIVATHDVDLAAEWADQV-------------- 208 (274)
T ss_pred ---CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHhCCEE--------------
Confidence 699999999999999999999999999998765 59999999999999999988
Q ss_pred hccCCCCcccccccEEEEEeCCeEEEEeccccc
Q 016804 328 LGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEF 360 (382)
Q Consensus 328 ~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~ 360 (382)
++|++|++++.|+++++
T Consensus 209 ----------------~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 209 ----------------IVLKEGRVLAEGDKSLL 225 (274)
T ss_pred ----------------EEEECCEEEEECCHHHh
Confidence 99999999999987654
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-53 Score=388.02 Aligned_cols=235 Identities=29% Similarity=0.512 Sum_probs=211.4
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
+++.++|+.|+|+.++++++|||+|++||+|||+|||||||||.+.++.||.+||+|+|.++|.|+..+. -..+++..|
T Consensus 3 ~~L~a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lP-m~~RArlGi 81 (243)
T COG1137 3 STLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLP-MHKRARLGI 81 (243)
T ss_pred cEEEehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCC-hHHHhhcCc
Confidence 4689999999999999999999999999999999999999999999999999999999999999998753 344566679
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcC-CCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENS-KMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~-~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~ 248 (382)
||+||++..|..+||+|||...+.... .....+.+.+++++|+.+++.+..+++..+||||||+|+.|||||+.
T Consensus 82 gYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~----- 156 (243)
T COG1137 82 GYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAA----- 156 (243)
T ss_pred ccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhc-----
Confidence 999999999999999999988764433 22223445567899999999999999999999999999999999986
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehh
Q 016804 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIIL 328 (382)
Q Consensus 249 a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~ 328 (382)
+|+.+||||||||+||.+..+++++++.|+..| ..|+++-|+..+...+|||.
T Consensus 157 --~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rg----------iGvLITDHNVREtL~i~dRa--------------- 209 (243)
T COG1137 157 --NPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRG----------IGVLITDHNVRETLDICDRA--------------- 209 (243)
T ss_pred --CCCEEEecCCccCCCchhHHHHHHHHHHHHhCC----------ceEEEccccHHHHHhhhheE---------------
Confidence 699999999999999999999999999999887 68999999999999999988
Q ss_pred ccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHHcC
Q 016804 329 GAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFASG 374 (382)
Q Consensus 329 ~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 374 (382)
.++++|+|.++|+++++. .++.+++.+-|
T Consensus 210 ---------------YIi~~G~vla~G~p~ei~--~n~~Vr~~YLG 238 (243)
T COG1137 210 ---------------YIISDGKVLAEGSPEEIV--NNEDVRRVYLG 238 (243)
T ss_pred ---------------EEEecCeEEecCCHHHHh--cChhhhhhccc
Confidence 889999999999999987 46788887765
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-51 Score=381.28 Aligned_cols=205 Identities=40% Similarity=0.624 Sum_probs=179.6
Q ss_pred eEEEEeEEEEe-CCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChh-hhccce
Q 016804 91 LIDCRNVYKSF-GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE-EISGLR 168 (382)
Q Consensus 91 ~I~~~nvs~~y-g~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~-~~~~~~ 168 (382)
||+++|++++| +++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++....... ...+.+
T Consensus 1 ~l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred CEEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 58999999999 4678999999999999999999999999999999999999999999999999876432111 111236
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~ 248 (382)
++|+||++.+|+.+|+.||+.+..... +.......+++.++++.+++.+..++++.+|||||||||+|||||+.
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~----- 154 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVR-GKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVN----- 154 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhC-----
Confidence 999999999998899999998864322 23344456678899999999988899999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 249 a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|++|||||||+|||+.++..+.++|+++++++ .|+|++||+++++..+|||+
T Consensus 155 --~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tii~~tH~~~~~~~~~d~i 207 (214)
T TIGR02673 155 --SPPLLLADEPTGNLDPDLSERILDLLKRLNKRG----------TTVIVATHDLSLVDRVAHRV 207 (214)
T ss_pred --CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHhcCEE
Confidence 699999999999999999999999999997765 59999999999999999988
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-51 Score=399.64 Aligned_cols=221 Identities=34% Similarity=0.527 Sum_probs=192.2
Q ss_pred EEEEeEEEEeCC-----eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCC--hhhh
Q 016804 92 IDCRNVYKSFGE-----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS--DEEI 164 (382)
Q Consensus 92 I~~~nvs~~yg~-----~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~--~~~~ 164 (382)
|+++||+|+|++ +++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..... ....
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 899999999974 469999999999999999999999999999999999999999999999998743111 1111
Q ss_pred ccceEEEEecCC--CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHHHHHH
Q 016804 165 SGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSI 241 (382)
Q Consensus 165 ~~~~Ig~V~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaIArAL 241 (382)
.+.+||||||++ .+|+ .||+||+.|+... .+...++..+++.++++.+||. ...++++.+|||||||||+|||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~-~tv~eni~~~~~~-~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL 160 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFE-ETVEKDICFGPMN-FGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVL 160 (290)
T ss_pred HHhhEEEEeeCchhhhhh-hhHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 233699999997 4665 6999999987532 2345556667889999999997 678999999999999999999999
Q ss_pred hcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccc
Q 016804 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFG 320 (382)
Q Consensus 242 ~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~ 320 (382)
+. +|++|||||||+|||+.++..+.++|++++++ | .|||++|||++++.++||||
T Consensus 161 ~~-------~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g----------~tviiitHd~~~~~~~~drv------- 216 (290)
T PRK13634 161 AM-------EPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKG----------LTTVLVTHSMEDAARYADQI------- 216 (290)
T ss_pred Hc-------CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEE-------
Confidence 97 69999999999999999999999999999775 5 59999999999999999988
Q ss_pred cchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 321 HIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|+++++|+++++.
T Consensus 217 -----------------------~~l~~G~i~~~g~~~~~~ 234 (290)
T PRK13634 217 -----------------------VVMHKGTVFLQGTPREIF 234 (290)
T ss_pred -----------------------EEEECCEEEEECCHHHHh
Confidence 999999999999887764
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-51 Score=401.95 Aligned_cols=219 Identities=33% Similarity=0.554 Sum_probs=195.2
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
+++++|++|+|+++.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++... ... .+.++|
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~--~~~-~~~~ig 78 (301)
T TIGR03522 2 SIRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQN--PKE-VQRNIG 78 (301)
T ss_pred EEEEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccC--hHH-HHhceE
Confidence 58999999999999999999999999999999999999999999999999999999999999987532 122 233699
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
|+||++.+|+.+|+.||+.+.... .+.+.++..+++.++++.+||.+..++++.+|||||||||+|||||++
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~------- 150 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGI-YGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIH------- 150 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhc-------
Confidence 999999999999999999876532 233445556678899999999999999999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhcc
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGA 330 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~ 330 (382)
+|++|||||||+|||+.++..++++|+++++ + +|||++||+++++.++|||+
T Consensus 151 ~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~----------~tiii~sH~l~~~~~~~d~i----------------- 202 (301)
T TIGR03522 151 DPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-D----------KTIILSTHIMQEVEAICDRV----------------- 202 (301)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-C----------CEEEEEcCCHHHHHHhCCEE-----------------
Confidence 6999999999999999999999999999964 4 49999999999999999988
Q ss_pred CCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 331 VAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 331 ~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.|+.+++.
T Consensus 203 -------------~~l~~G~i~~~g~~~~~~ 220 (301)
T TIGR03522 203 -------------IIINKGKIVADKKLDELS 220 (301)
T ss_pred -------------EEEECCEEEEeCCHHHHH
Confidence 999999999999887763
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-51 Score=398.95 Aligned_cols=223 Identities=32% Similarity=0.515 Sum_probs=193.7
Q ss_pred eEEEEeEEEEeCC-----eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCC--hhh
Q 016804 91 LIDCRNVYKSFGE-----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS--DEE 163 (382)
Q Consensus 91 ~I~~~nvs~~yg~-----~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~--~~~ 163 (382)
||+++||+|+|+. +.+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++..... ...
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 5899999999973 259999999999999999999999999999999999999999999999998742111 111
Q ss_pred hccceEEEEecCC--CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHHHHH
Q 016804 164 ISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARS 240 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaIArA 240 (382)
..+.+||||||++ .+|+ .||+||+.|+.... +.+..+..+++.++++.+||. ++.++.+.+||||||||++||||
T Consensus 81 ~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~a 158 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF-GIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGI 158 (288)
T ss_pred HHHhhEEEEecCcchhccc-chHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHH
Confidence 1234699999997 6776 69999999876432 345566677889999999996 57899999999999999999999
Q ss_pred HhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccc
Q 016804 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFG 320 (382)
Q Consensus 241 L~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~ 320 (382)
|+. +|++|||||||+|||+.++..+.++|++++++| .|||++|||++++..+||||
T Consensus 159 L~~-------~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g----------~til~vtHd~~~~~~~~dri------- 214 (288)
T PRK13643 159 LAM-------EPEVLVLDEPTAGLDPKARIEMMQLFESIHQSG----------QTVVLVTHLMDDVADYADYV------- 214 (288)
T ss_pred HHh-------CCCEEEEECCccCCCHHHHHHHHHHHHHHHHCC----------CEEEEEecCHHHHHHhCCEE-------
Confidence 996 699999999999999999999999999998765 59999999999999999988
Q ss_pred cchheehhccCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 321 HIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|+++++|+++++..
T Consensus 215 -----------------------~~l~~G~i~~~g~~~~~~~ 233 (288)
T PRK13643 215 -----------------------YLLEKGHIISCGTPSDVFQ 233 (288)
T ss_pred -----------------------EEEECCEEEEECCHHHHHc
Confidence 9999999999998888653
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-51 Score=389.45 Aligned_cols=225 Identities=26% Similarity=0.494 Sum_probs=195.0
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
.+|+++||+++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... .....+..+
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~~~i 82 (255)
T PRK11300 4 PLLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLP-GHQIARMGV 82 (255)
T ss_pred ceEEEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCC-HHHHHhcCe
Confidence 4799999999999889999999999999999999999999999999999999999999999999875432 222223359
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcC------C------C--CHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHH
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENS------K------M--RDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRV 235 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~------~------~--~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRV 235 (382)
+|+||++.+|+.+||+||+.++..... . . ...+..+.+.++++.+|+.+..++++.+||||||||+
T Consensus 83 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv 162 (255)
T PRK11300 83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRL 162 (255)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHH
Confidence 999999999999999999988532100 0 0 1122345678889999999899999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhc
Q 016804 236 ALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLC 314 (382)
Q Consensus 236 aIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~ 314 (382)
+|||||+. +|++|||||||+|||+.++..+.++|.+++++ + .|||++||+++++.++||++
T Consensus 163 ~la~al~~-------~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~----------~tii~~sH~~~~~~~~~d~i- 224 (255)
T PRK11300 163 EIARCMVT-------QPEILMLDEPAAGLNPKETKELDELIAELRNEHN----------VTVLLIEHDMKLVMGISDRI- 224 (255)
T ss_pred HHHHHHhc-------CCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcC----------CEEEEEeCCHHHHHHhCCEE-
Confidence 99999997 69999999999999999999999999999875 5 59999999999999999988
Q ss_pred cccccccchheehhccCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 315 LFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|++++.|+++++..
T Consensus 225 -----------------------------~~l~~g~i~~~~~~~~~~~ 243 (255)
T PRK11300 225 -----------------------------YVVNQGTPLANGTPEEIRN 243 (255)
T ss_pred -----------------------------EEEECCeEEecCCHHHHhh
Confidence 9999999999998777653
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-51 Score=380.60 Aligned_cols=208 Identities=33% Similarity=0.609 Sum_probs=184.7
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
|+++||+++|+++++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... .. .+.+++|
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~---~~-~~~~i~~ 76 (208)
T cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN---IE-ALRRIGA 76 (208)
T ss_pred CEEEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch---HH-HHhhEEE
Confidence 4789999999888999999999999999999999999999999999999999999999999876432 11 1236999
Q ss_pred EecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCC
Q 016804 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~ 251 (382)
+||++.+++.+|++||+.++..... .. .+++.++++.+++.+..++++.+|||||||||+|||||+. +
T Consensus 77 ~~q~~~~~~~~tv~e~l~~~~~~~~-~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~-------~ 144 (208)
T cd03268 77 LIEAPGFYPNLTARENLRLLARLLG-IR----KKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLG-------N 144 (208)
T ss_pred ecCCCccCccCcHHHHHHHHHHhcC-Cc----HHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhc-------C
Confidence 9999999988999999988653221 11 3457788999999988999999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccC
Q 016804 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAV 331 (382)
Q Consensus 252 P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~ 331 (382)
|++|||||||+|||+.++..+.++|+++++++ .|+|++|||++++..+||++
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tii~~tH~~~~~~~~~d~v------------------ 196 (208)
T cd03268 145 PDLLILDEPTNGLDPDGIKELRELILSLRDQG----------ITVLISSHLLSEIQKVADRI------------------ 196 (208)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHCC----------CEEEEEcCCHHHHHHhcCEE------------------
Confidence 99999999999999999999999999998765 59999999999999999988
Q ss_pred CCCcccccccEEEEEeCCeEEEEe
Q 016804 332 APDKEVFFIYRLIFLYEGKIVWQG 355 (382)
Q Consensus 332 ~~~~~~~~~~~ii~l~~G~i~~~g 355 (382)
++|++|++++.|
T Consensus 197 ------------~~l~~g~i~~~g 208 (208)
T cd03268 197 ------------GIINKGKLIEEG 208 (208)
T ss_pred ------------EEEECCEEEecC
Confidence 999999998764
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-51 Score=382.01 Aligned_cols=205 Identities=34% Similarity=0.557 Sum_probs=179.3
Q ss_pred eEEEEeEEEEe-CCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChh-hhccce
Q 016804 91 LIDCRNVYKSF-GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE-EISGLR 168 (382)
Q Consensus 91 ~I~~~nvs~~y-g~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~-~~~~~~ 168 (382)
||+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++....... ...+.+
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 1 MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred CEEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 48999999999 6778999999999999999999999999999999999999999999999999875432211 111236
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~ 248 (382)
++|+||++.+++.+|+.||+.+.... .+...++..+.+.++++.+++.+..++.+.+||||||||++|||||+.
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~----- 154 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLII-AGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVN----- 154 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHh-cCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHc-----
Confidence 99999999988889999999886532 223444555677889999999988999999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 249 a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|++|||||||++||+.++..+.++|+++++++ .|+|++|||++++..+|||+
T Consensus 155 --~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tiii~sH~~~~~~~~~d~i 207 (222)
T PRK10908 155 --KPAVLLADEPTGNLDDALSEGILRLFEEFNRVG----------VTVLMATHDIGLISRRSYRM 207 (222)
T ss_pred --CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHhCCEE
Confidence 699999999999999999999999999997765 59999999999999999988
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-51 Score=379.57 Aligned_cols=210 Identities=30% Similarity=0.597 Sum_probs=186.8
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. . .+.+++|
T Consensus 1 l~~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~--~~~~i~~ 74 (210)
T cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----A--ARNRIGY 74 (210)
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----H--HHccEEE
Confidence 478999999998899999999999999999999999999999999999999999999999987531 1 1236999
Q ss_pred EecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCC
Q 016804 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~ 251 (382)
+||++.+++.+|++||+.+.... .+....+..+++.++++.+|+.+..++++.+||||||||++|||||+. +
T Consensus 75 ~~q~~~~~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~-------~ 146 (210)
T cd03269 75 LPEERGLYPKMKVIDQLVYLAQL-KGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIH-------D 146 (210)
T ss_pred eccCCcCCcCCcHHHHHHHHHHH-cCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhc-------C
Confidence 99999999989999999875432 223344556678899999999988899999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccC
Q 016804 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAV 331 (382)
Q Consensus 252 P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~ 331 (382)
|++|||||||+|||+.++..+.+.|+++.+++ .|+|++|||++++.++||++
T Consensus 147 p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~----------~tii~~sH~~~~~~~~~d~i------------------ 198 (210)
T cd03269 147 PELLILDEPFSGLDPVNVELLKDVIRELARAG----------KTVILSTHQMELVEELCDRV------------------ 198 (210)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCC----------CEEEEECCCHHHHHHhhhEE------------------
Confidence 99999999999999999999999999997765 59999999999999999988
Q ss_pred CCCcccccccEEEEEeCCeEEEEe
Q 016804 332 APDKEVFFIYRLIFLYEGKIVWQG 355 (382)
Q Consensus 332 ~~~~~~~~~~~ii~l~~G~i~~~g 355 (382)
++|++|++++.|
T Consensus 199 ------------~~l~~g~i~~~~ 210 (210)
T cd03269 199 ------------LLLNKGRAVLYG 210 (210)
T ss_pred ------------EEEeCCEEEecC
Confidence 999999998754
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-51 Score=402.68 Aligned_cols=223 Identities=34% Similarity=0.542 Sum_probs=193.0
Q ss_pred eEEEEeEEEEeCCe-----eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCC------
Q 016804 91 LIDCRNVYKSFGEK-----HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLI------ 159 (382)
Q Consensus 91 ~I~~~nvs~~yg~~-----~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~------ 159 (382)
+|+++||+++|++. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|++.....
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 48999999999743 5999999999999999999999999999999999999999999999987652110
Q ss_pred ----------------ChhhhccceEEEEecCC--CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccc
Q 016804 160 ----------------SDEEISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVE 220 (382)
Q Consensus 160 ----------------~~~~~~~~~Ig~V~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~ 220 (382)
......+.+||||||++ .+|. .||+||+.|+... .+...++..+++.++++.+||. ++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~e~i~~~~~~-~~~~~~~~~~~~~~~l~~~gL~~~~~ 159 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFE-QTIEKDIIFGPVS-MGVSKEEAKKRAAKYIELVGLDESYL 159 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCccccccc-ccHHHHHHhhHHH-cCCCHHHHHHHHHHHHHHcCCChhhh
Confidence 00111234699999986 4554 6999999987642 3456667778899999999996 789
Q ss_pred cCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEc
Q 016804 221 DRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVT 300 (382)
Q Consensus 221 ~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivT 300 (382)
++++.+|||||||||+|||||+. +|++|||||||++||+.++..+.++|++++++| .|||+||
T Consensus 160 ~~~~~~LSgGqkqrvalA~aL~~-------~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g----------~tiiivt 222 (305)
T PRK13651 160 QRSPFELSGGQKRRVALAGILAM-------EPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQG----------KTIILVT 222 (305)
T ss_pred hCChhhCCHHHHHHHHHHHHHHh-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC----------CEEEEEe
Confidence 99999999999999999999997 699999999999999999999999999998766 5999999
Q ss_pred cCHHHHHHhhchhccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 301 HQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 301 Hdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
||++.+.++|||| ++|++|++++.|+++++..
T Consensus 223 Hd~~~~~~~adrv------------------------------~vl~~G~i~~~g~~~~~~~ 254 (305)
T PRK13651 223 HDLDNVLEWTKRT------------------------------IFFKDGKIIKDGDTYDILS 254 (305)
T ss_pred eCHHHHHHhCCEE------------------------------EEEECCEEEEECCHHHHhc
Confidence 9999999999988 9999999999998888654
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-51 Score=380.18 Aligned_cols=211 Identities=30% Similarity=0.562 Sum_probs=186.4
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
|+++|++++|+++++|+|+||+|++| +++|+||||||||||+++|+|+++|++|+|.++|+++.... .. .+.+++|
T Consensus 1 i~~~~~~~~~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~--~~-~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP--QK-LRRRIGY 76 (211)
T ss_pred CEEEEEEEEECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch--HH-HHhheEE
Confidence 47899999998889999999999999 99999999999999999999999999999999998865422 22 2336999
Q ss_pred EecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCC
Q 016804 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~ 251 (382)
+||++.+|+.+||.||+.+..... +....+..+.+.++++.+|+.+..++++.+|||||||||+|||||+. +
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~-------~ 148 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLK-GIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVG-------D 148 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhc-------C
Confidence 999999999899999998865322 23344456678899999999988899999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccC
Q 016804 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAV 331 (382)
Q Consensus 252 P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~ 331 (382)
|++|||||||+|||+.++..+.++|++++++ .|+|++|||++++.++|||+
T Consensus 149 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-----------~tii~vsH~~~~~~~~~d~i------------------ 199 (211)
T cd03264 149 PSILIVDEPTAGLDPEERIRFRNLLSELGED-----------RIVILSTHIVEDVESLCNQV------------------ 199 (211)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHhCC-----------CEEEEEcCCHHHHHHhCCEE------------------
Confidence 9999999999999999999999999999753 49999999999999999988
Q ss_pred CCCcccccccEEEEEeCCeEEEEe
Q 016804 332 APDKEVFFIYRLIFLYEGKIVWQG 355 (382)
Q Consensus 332 ~~~~~~~~~~~ii~l~~G~i~~~g 355 (382)
++|++|++++.|
T Consensus 200 ------------~~l~~g~i~~~g 211 (211)
T cd03264 200 ------------AVLNKGKLVFEG 211 (211)
T ss_pred ------------EEEECCEEEecC
Confidence 999999998764
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-51 Score=395.67 Aligned_cols=233 Identities=35% Similarity=0.540 Sum_probs=201.6
Q ss_pred EEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhh--hccceEE
Q 016804 93 DCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE--ISGLRIG 170 (382)
Q Consensus 93 ~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~--~~~~~Ig 170 (382)
.++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++........ ..+.+++
T Consensus 26 ~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~ 105 (269)
T cd03294 26 SKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKIS 105 (269)
T ss_pred hhhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEE
Confidence 57899999999999999999999999999999999999999999999999999999999998754321111 1223699
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
|+||++.+|+.+|+.||+.+.... .+....+..+++.++++.+||.+..++++.+|||||||||+|||||+.
T Consensus 106 ~v~q~~~~~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~------- 177 (269)
T cd03294 106 MVFQSFALLPHRTVLENVAFGLEV-QGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAV------- 177 (269)
T ss_pred EEecCcccCCCCcHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhc-------
Confidence 999999999889999999886532 223344455678899999999999999999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
+|++|||||||+|||+.++..+.++|+++.++ | .|+|++|||++++.++||++
T Consensus 178 ~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g----------~tiii~tH~~~~~~~~~d~v---------------- 231 (269)
T cd03294 178 DPDILLMDEAFSALDPLIRREMQDELLRLQAELQ----------KTIVFITHDLDEALRLGDRI---------------- 231 (269)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhcCEE----------------
Confidence 69999999999999999999999999999765 4 59999999999999999988
Q ss_pred cCCCCcccccccEEEEEeCCeEEEEeccccccc-CCCHHHHHHHc
Q 016804 330 AVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFAS 373 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~ 373 (382)
++|++|++++.|+++++.. +.+++...|+.
T Consensus 232 --------------~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 262 (269)
T cd03294 232 --------------AIMKDGRLVQVGTPEEILTNPANDYVREFFR 262 (269)
T ss_pred --------------EEEECCEEEEeCCHHHHHhCcCcHHHHHHHh
Confidence 9999999999998888753 45667777765
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-51 Score=386.32 Aligned_cols=235 Identities=34% Similarity=0.525 Sum_probs=199.7
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEECCCCCChhhhc
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLISDEEIS 165 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p-----~sG~I~i~G~~i~~~~~~~~~~ 165 (382)
+|+++||+++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|.++.... ... .
T Consensus 3 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~-~~~-~ 80 (250)
T PRK14247 3 KIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMD-VIE-L 80 (250)
T ss_pred eEEEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCC-HHH-H
Confidence 59999999999988999999999999999999999999999999999999974 7999999999875432 222 2
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhHhhcCC-CCHHHHHHHHHHHHHHcCCcc----cccCCCCCCChHHHHHHHHHHH
Q 016804 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSK-MRDEQISELVKENLAAVGLKG----VEDRLPSELSGGMKKRVALARS 240 (382)
Q Consensus 166 ~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~-~~~~~~~~~v~~~L~~~gL~~----~~~~~~~~LSGGqrQRVaIArA 240 (382)
+.+|||+||++.+++.+||.||+.++...... ....+..+.+.++++.+||.+ ..++.+.+|||||||||+||||
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lara 160 (250)
T PRK14247 81 RRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARA 160 (250)
T ss_pred hccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHH
Confidence 33699999999888889999999886532211 133455667889999999853 5788999999999999999999
Q ss_pred HhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccc
Q 016804 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFG 320 (382)
Q Consensus 241 L~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~ 320 (382)
|+. +|++|||||||+|||+.++..+.+.|+++.+ + .|+|++|||++++.++|||+
T Consensus 161 l~~-------~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~----------~tiii~sH~~~~~~~~~d~i------- 215 (250)
T PRK14247 161 LAF-------QPEVLLADEPTANLDPENTAKIESLFLELKK-D----------MTIVLVTHFPQQAARISDYV------- 215 (250)
T ss_pred Hhc-------CCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-C----------CEEEEEeCCHHHHHHhcCEE-------
Confidence 997 6999999999999999999999999999864 4 49999999999999999988
Q ss_pred cchheehhccCCCCcccccccEEEEEeCCeEEEEeccccccc-CCCHHHHHHHcCC
Q 016804 321 HIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFASGS 375 (382)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~~~ 375 (382)
++|++|++++.|++.++.. +.++.+..|+.+.
T Consensus 216 -----------------------~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 248 (250)
T PRK14247 216 -----------------------AFLYKGQIVEWGPTREVFTNPRHELTEKYVTGR 248 (250)
T ss_pred -----------------------EEEECCeEEEECCHHHHHcCCccHHHHHHhhcc
Confidence 9999999999998888753 3456666676554
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-51 Score=379.19 Aligned_cols=204 Identities=36% Similarity=0.553 Sum_probs=178.3
Q ss_pred EEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChh-hhccceE
Q 016804 92 IDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE-EISGLRI 169 (382)
Q Consensus 92 I~~~nvs~~yg~-~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~-~~~~~~I 169 (382)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++....... ...+.+|
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 80 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence 478999999964 68999999999999999999999999999999999999999999999999875432111 1122369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
+|+||++.+|+.+|++||+.++.... +...++..+++.++++.+|+.+..++++.+||||||||++|||||+.
T Consensus 81 ~~v~q~~~~~~~~t~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~------ 153 (214)
T cd03292 81 GVVFQDFRLLPDRNVYENVAFALEVT-GVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVN------ 153 (214)
T ss_pred EEEecCchhccCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHc------
Confidence 99999999999899999998865322 23444556678899999999988899999999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|++|||||||++||+.++..+.+.|+++.+++ .|+|++|||++++..+||++
T Consensus 154 -~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~----------~tiiivtH~~~~~~~~~d~i 206 (214)
T cd03292 154 -SPTILIADEPTGNLDPDTTWEIMNLLKKINKAG----------TTVVVATHAKELVDTTRHRV 206 (214)
T ss_pred -CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHhCCEE
Confidence 699999999999999999999999999997665 59999999999999999988
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-51 Score=388.67 Aligned_cols=236 Identities=29% Similarity=0.496 Sum_probs=200.3
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEECCCCCChhhh
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-----PDKGEVYIRGRKRAGLISDEEI 164 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~-----p~sG~I~i~G~~i~~~~~~~~~ 164 (382)
.+|+++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.........
T Consensus 12 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~ 91 (260)
T PRK10744 12 SKIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIAL 91 (260)
T ss_pred ceEEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHH
Confidence 46999999999998889999999999999999999999999999999999986 5899999999987421111111
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc----ccccCCCCCCChHHHHHHHHHHH
Q 016804 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALARS 240 (382)
Q Consensus 165 ~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~----~~~~~~~~~LSGGqrQRVaIArA 240 (382)
.+.+|+|+||++.+|+ .|++||+.++.......+.++..+++.++++.+++. +..++.+.+||||||||++||||
T Consensus 92 ~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lara 170 (260)
T PRK10744 92 LRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARG 170 (260)
T ss_pred HhcceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 2336999999999998 799999987653222344455566788999999984 45788999999999999999999
Q ss_pred HhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccc
Q 016804 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFG 320 (382)
Q Consensus 241 L~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~ 320 (382)
|+. +|++|||||||+|||+.++..+.+.|+++.+ + .|+|++||+++.+..+|||+
T Consensus 171 l~~-------~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~----------~tiii~sH~~~~~~~~~d~i------- 225 (260)
T PRK10744 171 IAI-------RPEVLLLDEPCSALDPISTGRIEELITELKQ-D----------YTVVIVTHNMQQAARCSDYT------- 225 (260)
T ss_pred HHC-------CCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-C----------CeEEEEeCCHHHHHHhCCEE-------
Confidence 997 6999999999999999999999999999964 4 49999999999999999988
Q ss_pred cchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 321 HIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
++|++|++++.|+++++. .+.++.+.+++.+
T Consensus 226 -----------------------~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 257 (260)
T PRK10744 226 -----------------------AFMYLGELIEFGNTDTIFTKPAKKQTEDYITG 257 (260)
T ss_pred -----------------------EEEECCEEEEeCCHHHHHhCCCcHHHHHHHhh
Confidence 999999999999888875 3456777777654
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-51 Score=402.91 Aligned_cols=227 Identities=30% Similarity=0.466 Sum_probs=195.8
Q ss_pred CCcceEEEEeEEEEeCC-----eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCC--
Q 016804 87 DGDVLIDCRNVYKSFGE-----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLI-- 159 (382)
Q Consensus 87 ~~~~~I~~~nvs~~yg~-----~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~-- 159 (382)
.++++|+++||+++|++ +++|+||||+|++||++||+||||||||||+++|+|+++|++|+|+++|.++....
T Consensus 17 ~~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~ 96 (320)
T PRK13631 17 SDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNN 96 (320)
T ss_pred CCCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccc
Confidence 44578999999999974 35999999999999999999999999999999999999999999999999874320
Q ss_pred ------------ChhhhccceEEEEecCC--CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccccCCC
Q 016804 160 ------------SDEEISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLP 224 (382)
Q Consensus 160 ------------~~~~~~~~~Ig~V~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~ 224 (382)
......+.+||||||++ .+|+ .||+||+.++... .+.+.++..+++.++++.+||. ++.++.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~-~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 174 (320)
T PRK13631 97 HELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVA-LGVKKSEAKKLAKFYLNKMGLDDSYLERSP 174 (320)
T ss_pred ccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHh-cCCCHHHHHHHHHHHHHHcCCChhHhcCCc
Confidence 01111234699999997 5776 5999999887532 2345556667788999999996 6889999
Q ss_pred CCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHH
Q 016804 225 SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS 304 (382)
Q Consensus 225 ~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~ 304 (382)
.+|||||||||+|||||+. +|++|||||||+|||+.++..++++|+++++++ .|||+||||++
T Consensus 175 ~~LSgGqkqRvaiAraL~~-------~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g----------~TiiivtHd~~ 237 (320)
T PRK13631 175 FGLSGGQKRRVAIAGILAI-------QPEILIFDEPTAGLDPKGEHEMMQLILDAKANN----------KTVFVITHTME 237 (320)
T ss_pred ccCCHHHHHHHHHHHHHHc-------CCCEEEEECCccCCCHHHHHHHHHHHHHHHHCC----------CEEEEEecCHH
Confidence 9999999999999999997 699999999999999999999999999997765 59999999999
Q ss_pred HHHHhhchhccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 305 TIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 305 ~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++.++|||+ ++|++|++++.|+++++..
T Consensus 238 ~~~~~adri------------------------------~vl~~G~i~~~g~~~~~~~ 265 (320)
T PRK13631 238 HVLEVADEV------------------------------IVMDKGKILKTGTPYEIFT 265 (320)
T ss_pred HHHHhCCEE------------------------------EEEECCEEEEeCCHHHHhc
Confidence 999999988 9999999999998877643
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-51 Score=396.02 Aligned_cols=222 Identities=32% Similarity=0.541 Sum_probs=194.2
Q ss_pred ceEEEEeEEEEeCC---eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhcc
Q 016804 90 VLIDCRNVYKSFGE---KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (382)
Q Consensus 90 ~~I~~~nvs~~yg~---~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~ 166 (382)
++|+++||+++|++ +.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++... ..... +
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~-~~~~~-~ 80 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEE-NVWDI-R 80 (279)
T ss_pred ceEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcC-cHHHH-H
Confidence 36999999999963 4599999999999999999999999999999999999999999999999987542 22222 2
Q ss_pred ceEEEEecCCC-CCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCC
Q 016804 167 LRIGLVFQSAA-LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (382)
Q Consensus 167 ~~Ig~V~Q~~~-l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~ 245 (382)
.++||+||++. +++..||+||+.++... .+.++++..+++.++++.+||.++.++++.+||||||||++|||||+.
T Consensus 81 ~~i~~v~q~~~~~~~~~tv~eni~~~~~~-~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~-- 157 (279)
T PRK13650 81 HKIGMVFQNPDNQFVGATVEDDVAFGLEN-KGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAM-- 157 (279)
T ss_pred hhceEEEcChHHhcccccHHHHHHhhHHh-CCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHc--
Confidence 36999999984 66678999999987532 234566667788999999999999999999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchh
Q 016804 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDV 324 (382)
Q Consensus 246 ~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~ 324 (382)
+|++|||||||+|||+.++..+.++|++++++ | +|||++|||++++. .|||+
T Consensus 158 -----~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g----------~tilivtH~~~~~~-~~dri----------- 210 (279)
T PRK13650 158 -----RPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQ----------MTVISITHDLDEVA-LSDRV----------- 210 (279)
T ss_pred -----CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEecCHHHHH-hCCEE-----------
Confidence 69999999999999999999999999999875 5 59999999999984 78877
Q ss_pred eehhccCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 325 VIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|+++..|+++++..
T Consensus 211 -------------------~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13650 211 -------------------LVMKNGQVESTSTPRELFS 229 (279)
T ss_pred -------------------EEEECCEEEEECCHHHHHc
Confidence 9999999999998887653
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-51 Score=380.64 Aligned_cols=218 Identities=35% Similarity=0.600 Sum_probs=183.6
Q ss_pred eEEEEeEEEEeCCe----eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCCh-hhhc
Q 016804 91 LIDCRNVYKSFGEK----HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD-EEIS 165 (382)
Q Consensus 91 ~I~~~nvs~~yg~~----~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~-~~~~ 165 (382)
+|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...... ....
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHh
Confidence 48899999999765 799999999999999999999999999999999999999999999999987543211 1112
Q ss_pred cceEEEEecCC--CCCCCCCHHHHHHhhHhhcCCCCHHHHHHH-HHHHHHHcCCc-ccccCCCCCCChHHHHHHHHHHHH
Q 016804 166 GLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISEL-VKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSI 241 (382)
Q Consensus 166 ~~~Ig~V~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~-v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaIArAL 241 (382)
+.+++|+||++ .+++.+||++|+.+...........+..+. +.++++.+++. ...++.+.+|||||||||+|||||
T Consensus 81 ~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral 160 (228)
T cd03257 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARAL 160 (228)
T ss_pred hccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHH
Confidence 33699999998 567779999999876432221112222222 35789999995 678999999999999999999999
Q ss_pred hcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccc
Q 016804 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFG 320 (382)
Q Consensus 242 ~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~ 320 (382)
+. +|++|||||||++||+.++..+.+.|++++++ + .|||++|||++++..+||++
T Consensus 161 ~~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tii~~sH~~~~~~~~~d~i------- 216 (228)
T cd03257 161 AL-------NPKLLIADEPTSALDVSVQAQILDLLKKLQEELG----------LTLLFITHDLGVVAKIADRV------- 216 (228)
T ss_pred hc-------CCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHhcCeE-------
Confidence 97 69999999999999999999999999999875 5 59999999999999999988
Q ss_pred cchheehhccCCCCcccccccEEEEEeCCeEEEEe
Q 016804 321 HIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQG 355 (382)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g 355 (382)
++|++|++++.|
T Consensus 217 -----------------------~~l~~G~i~~~g 228 (228)
T cd03257 217 -----------------------AVMYAGKIVEEG 228 (228)
T ss_pred -----------------------EEEeCCEEEecC
Confidence 999999998754
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-51 Score=385.49 Aligned_cols=222 Identities=25% Similarity=0.417 Sum_probs=193.1
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
++|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... .....+.++
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~-~~~~~~~~i 82 (237)
T PRK11614 4 VMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQ-TAKIMREAV 82 (237)
T ss_pred cEEEEEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCC-HHHHHHhCE
Confidence 4799999999999888999999999999999999999999999999999999999999999999875432 211123369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHc-CCcccccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAV-GLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~-gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~ 248 (382)
+|+||++.+|+.+||.+|+.+.... . ...+..+.+.++++.+ ++.+..++++.+||||||||++|||||+.
T Consensus 83 ~~~~q~~~~~~~~tv~~~l~~~~~~-~--~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~----- 154 (237)
T PRK11614 83 AIVPEGRRVFSRMTVEENLAMGGFF-A--ERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMS----- 154 (237)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhc-c--ChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHh-----
Confidence 9999999999989999999875421 1 2233445567778888 58777888999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehh
Q 016804 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIIL 328 (382)
Q Consensus 249 a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~ 328 (382)
+|++|||||||+|||+.++..+.+.|+++++++ .|+|++|||++++.++|||+
T Consensus 155 --~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tiii~sH~~~~~~~~~d~i--------------- 207 (237)
T PRK11614 155 --QPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQG----------MTIFLVEQNANQALKLADRG--------------- 207 (237)
T ss_pred --CCCEEEEcCccccCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCcHHHHHhhCCEE---------------
Confidence 699999999999999999999999999998765 59999999999999999988
Q ss_pred ccCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 329 GAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 329 ~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|++++.|+++++..
T Consensus 208 ---------------~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 208 ---------------YVLENGHVVLEDTGDALLA 226 (237)
T ss_pred ---------------EEEeCCEEEeeCCHHHHhc
Confidence 9999999999998887753
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-51 Score=386.22 Aligned_cols=236 Identities=32% Similarity=0.539 Sum_probs=199.8
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEECCCC-CChhh
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGL-ISDEE 163 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p-----~sG~I~i~G~~i~~~-~~~~~ 163 (382)
++|+++||+++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++... .....
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (253)
T PRK14267 3 FAIETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIE 82 (253)
T ss_pred ceEEEEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHH
Confidence 469999999999988899999999999999999999999999999999999987 499999999987521 11111
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhHhhcCC-CCHHHHHHHHHHHHHHcCCc----ccccCCCCCCChHHHHHHHHH
Q 016804 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSK-MRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALA 238 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~-~~~~~~~~~v~~~L~~~gL~----~~~~~~~~~LSGGqrQRVaIA 238 (382)
.+.+|+|+||++.+|+.+|+.||+.++...... ...++..+++.++++.+++. ...++++.+||||||||++||
T Consensus 83 -~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 161 (253)
T PRK14267 83 -VRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIA 161 (253)
T ss_pred -HhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHH
Confidence 233699999999999989999999876532211 13344556678899999984 356889999999999999999
Q ss_pred HHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccc
Q 016804 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQI 318 (382)
Q Consensus 239 rAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~ 318 (382)
|||+. +|++|||||||+|||+.++..+.++|+++.+ + .|+|++|||++++..+|||+
T Consensus 162 ral~~-------~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~----------~tiii~sH~~~~~~~~~d~i----- 218 (253)
T PRK14267 162 RALAM-------KPKILLMDEPTANIDPVGTAKIEELLFELKK-E----------YTIVLVTHSPAQAARVSDYV----- 218 (253)
T ss_pred HHHhc-------CCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-C----------CEEEEEECCHHHHHhhCCEE-----
Confidence 99997 6999999999999999999999999999965 3 49999999999999999988
Q ss_pred cccchheehhccCCCCcccccccEEEEEeCCeEEEEeccccccc-CCCHHHHHHHcC
Q 016804 319 FGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFASG 374 (382)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~~ 374 (382)
++|++|++++.|++.++.. +.++....|+.|
T Consensus 219 -------------------------~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~ 250 (253)
T PRK14267 219 -------------------------AFLYLGKLIEVGPTRKVFENPEHELTEKYVTG 250 (253)
T ss_pred -------------------------EEEECCEEEEeCCHHHHHhCCCcHHHHHHhcc
Confidence 9999999999998888753 445677777765
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-50 Score=385.30 Aligned_cols=237 Identities=30% Similarity=0.485 Sum_probs=200.7
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC--C---CccEEEECCEECCCCCChhhhc
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA--P---DKGEVYIRGRKRAGLISDEEIS 165 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~--p---~sG~I~i~G~~i~~~~~~~~~~ 165 (382)
.|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|+++|+++..........
T Consensus 4 ~l~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~ 83 (252)
T PRK14256 4 KVKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSI 83 (252)
T ss_pred EEEEEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHh
Confidence 4899999999998889999999999999999999999999999999999986 4 6999999999875321111112
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc----cccCCCCCCChHHHHHHHHHHHH
Q 016804 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG----VEDRLPSELSGGMKKRVALARSI 241 (382)
Q Consensus 166 ~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~----~~~~~~~~LSGGqrQRVaIArAL 241 (382)
+.+|+|+||++.+|+.+|++||+.++..........+..+++.++++.+++.. ..++.+.+||||||||++|||||
T Consensus 84 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral 163 (252)
T PRK14256 84 RRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTI 163 (252)
T ss_pred hccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHH
Confidence 34699999999999989999999876432221233445567888999999853 56788999999999999999999
Q ss_pred hcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccccc
Q 016804 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGH 321 (382)
Q Consensus 242 ~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~ 321 (382)
+. +|++|||||||+|||+.++..+.++|+++.++ .|+|++||+++++.++|||+
T Consensus 164 ~~-------~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~-----------~tiiivsH~~~~~~~~~d~i-------- 217 (252)
T PRK14256 164 AV-------KPEVILMDEPASALDPISTLKIEELIEELKEK-----------YTIIIVTHNMQQAARVSDYT-------- 217 (252)
T ss_pred hc-------CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhC-----------CcEEEEECCHHHHHhhCCEE--------
Confidence 97 69999999999999999999999999999753 49999999999999999988
Q ss_pred chheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcCC
Q 016804 322 IDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASGS 375 (382)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~~ 375 (382)
++|++|++++.|+++++. .+.++.+..++.+.
T Consensus 218 ----------------------~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (252)
T PRK14256 218 ----------------------AFFYMGDLVECGETKKIFTTPEKKQTEDYITGR 250 (252)
T ss_pred ----------------------EEEECCEEEEeCCHHHHHhCCCcHHHHHHHhhc
Confidence 999999999999888864 45678888887653
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-51 Score=386.10 Aligned_cols=231 Identities=34% Similarity=0.523 Sum_probs=199.5
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
+|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... .... +..++
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~-~~~~-~~~i~ 80 (241)
T PRK14250 3 EIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTID-VIDL-RRKIG 80 (241)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcC-hHHh-hhcEE
Confidence 589999999998889999999999999999999999999999999999999999999999999875432 1222 23699
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
|+||++.+|+ .|++||+.+..... . . ..+++.++++.+++. +..++++.+||||||||++|||||+.
T Consensus 81 ~~~q~~~~~~-~tv~e~l~~~~~~~-~--~--~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~------ 148 (241)
T PRK14250 81 MVFQQPHLFE-GTVKDNIEYGPMLK-G--E--KNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLAN------ 148 (241)
T ss_pred EEecCchhch-hhHHHHHhcchhhc-C--c--HHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhc------
Confidence 9999999997 69999998754211 1 1 134577899999996 67899999999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehh
Q 016804 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIIL 328 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~ 328 (382)
+|++|||||||++||+.++..+.+.|+++.++ | .|+|++|||++++..+|||+
T Consensus 149 -~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g----------~tii~~sH~~~~~~~~~d~i--------------- 202 (241)
T PRK14250 149 -NPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMN----------LTVIWITHNMEQAKRIGDYT--------------- 202 (241)
T ss_pred -CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCC----------CEEEEEeccHHHHHHhCCEE---------------
Confidence 69999999999999999999999999999774 5 59999999999999999988
Q ss_pred ccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcCCC
Q 016804 329 GAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASGSL 376 (382)
Q Consensus 329 ~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~~~ 376 (382)
++|++|++++.|++.++. .+.+++...|..+.+
T Consensus 203 ---------------~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (241)
T PRK14250 203 ---------------AFLNKGILVEYAKTYDFFTNPQNEVTKLFIQGKL 236 (241)
T ss_pred ---------------EEEeCCEEEEeCCHHHHhcCCCcHHHHHHHhchh
Confidence 999999999999888875 345677787776543
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-51 Score=383.03 Aligned_cols=220 Identities=30% Similarity=0.538 Sum_probs=192.5
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
+|+++|++++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.... ... ..+++
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~-~~~--~~~i~ 77 (236)
T TIGR03864 1 ALEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAP-RAA--LARLG 77 (236)
T ss_pred CEEEEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCC-hhh--hhhEE
Confidence 588999999999889999999999999999999999999999999999999999999999999875432 111 12699
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
|+||++.+++.+|++||+.+..... +....+..+.+.++++.+|+.+..++.+.+||||||||++|||||+.
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~------- 149 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALH-GLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLH------- 149 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhc-------
Confidence 9999999888899999998764322 23344455678899999999988899999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
+|++|||||||+|||+.++..+.+.|++++++ + .|+|++||+++++.. |||+
T Consensus 150 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~----------~tiii~sH~~~~~~~-~d~i---------------- 202 (236)
T TIGR03864 150 RPALLLLDEPTVGLDPASRAAIVAHVRALCRDQG----------LSVLWATHLVDEIEA-DDRL---------------- 202 (236)
T ss_pred CCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCC----------CEEEEEecChhhHhh-CCEE----------------
Confidence 69999999999999999999999999999753 5 599999999999975 8877
Q ss_pred cCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 330 AVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|++++.|+++++..
T Consensus 203 --------------~~l~~G~i~~~~~~~~~~~ 221 (236)
T TIGR03864 203 --------------VVLHRGRVLADGAAAELRG 221 (236)
T ss_pred --------------EEEeCCeEEEeCCHHHHHH
Confidence 9999999999998777653
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-51 Score=401.55 Aligned_cols=212 Identities=32% Similarity=0.566 Sum_probs=188.3
Q ss_pred EEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCC
Q 016804 99 KSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAAL 178 (382)
Q Consensus 99 ~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l 178 (382)
|+|+++++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++... .... +.+|||+||++.+
T Consensus 1 k~y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~--~~~~-~~~i~~~~q~~~~ 77 (302)
T TIGR01188 1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVRE--PRKV-RRSIGIVPQYASV 77 (302)
T ss_pred CeeCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccC--HHHH-HhhcEEecCCCCC
Confidence 478888999999999999999999999999999999999999999999999999987531 1221 3369999999999
Q ss_pred CCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEe
Q 016804 179 FDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYD 258 (382)
Q Consensus 179 ~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLD 258 (382)
|+.+||+||+.+.... .+....+..+++.++++.+||.+..++++.+|||||||||+|||||++ +|++||||
T Consensus 78 ~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~-------~p~lllLD 149 (302)
T TIGR01188 78 DEDLTGRENLEMMGRL-YGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIH-------QPDVLFLD 149 (302)
T ss_pred CCCCcHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhc-------CCCEEEEe
Confidence 9999999999886432 234445556678899999999988999999999999999999999997 69999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccCCCCcccc
Q 016804 259 EPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVF 338 (382)
Q Consensus 259 EPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (382)
|||+|||+.++..++++|++++++| .|||++||+++++.++|||+
T Consensus 150 EPt~gLD~~~~~~l~~~l~~~~~~g----------~tvi~~sH~~~~~~~~~d~v------------------------- 194 (302)
T TIGR01188 150 EPTTGLDPRTRRAIWDYIRALKEEG----------VTILLTTHYMEEADKLCDRI------------------------- 194 (302)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHhCC----------CEEEEECCCHHHHHHhCCEE-------------------------
Confidence 9999999999999999999998766 59999999999999999988
Q ss_pred cccEEEEEeCCeEEEEecccccc
Q 016804 339 FIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 339 ~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.|+++++.
T Consensus 195 -----~~l~~G~i~~~g~~~~l~ 212 (302)
T TIGR01188 195 -----AIIDHGRIIAEGTPEELK 212 (302)
T ss_pred -----EEEECCEEEEECCHHHHH
Confidence 999999999999887753
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-51 Score=390.60 Aligned_cols=237 Identities=29% Similarity=0.497 Sum_probs=201.6
Q ss_pred cceEEEEeEEEEeCC---------eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCC
Q 016804 89 DVLIDCRNVYKSFGE---------KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLI 159 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~---------~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~ 159 (382)
+++|+++||+|+|+. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++...
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~- 80 (267)
T PRK15112 2 ETLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFG- 80 (267)
T ss_pred cceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCC-
Confidence 357999999999962 4699999999999999999999999999999999999999999999999987532
Q ss_pred ChhhhccceEEEEecCCC--CCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHH
Q 016804 160 SDEEISGLRIGLVFQSAA--LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVA 236 (382)
Q Consensus 160 ~~~~~~~~~Ig~V~Q~~~--l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVa 236 (382)
.... .+.+|+|+||++. +++.+|+.+|+.+....+......+..+.+.++++.+|+. ...++++.+|||||||||+
T Consensus 81 ~~~~-~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~ 159 (267)
T PRK15112 81 DYSY-RSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLG 159 (267)
T ss_pred chhh-HhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHH
Confidence 1111 2236999999975 6778899999987654332334445566788999999994 6788899999999999999
Q ss_pred HHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhcc
Q 016804 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCL 315 (382)
Q Consensus 237 IArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~ 315 (382)
|||||+. +|+||||||||++||+.++..+.++|+++.++ | .|||++||+++++..+|||+
T Consensus 160 laral~~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g----------~tviivsH~~~~~~~~~d~i-- 220 (267)
T PRK15112 160 LARALIL-------RPKVIIADEALASLDMSMRSQLINLMLELQEKQG----------ISYIYVTQHLGMMKHISDQV-- 220 (267)
T ss_pred HHHHHHh-------CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC----------cEEEEEeCCHHHHHHhcCEE--
Confidence 9999997 69999999999999999999999999999875 5 59999999999999999988
Q ss_pred ccccccchheehhccCCCCcccccccEEEEEeCCeEEEEeccccccc-CCCHHHHHHHcC
Q 016804 316 FQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFASG 374 (382)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~~ 374 (382)
++|++|++++.|++.++.. +.++.+..++.+
T Consensus 221 ----------------------------~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~ 252 (267)
T PRK15112 221 ----------------------------LVMHQGEVVERGSTADVLASPLHELTKRLIAG 252 (267)
T ss_pred ----------------------------EEEECCEEEecCCHHHHhcCCCCHHHHHHHHh
Confidence 9999999999998887754 456777777654
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-51 Score=423.46 Aligned_cols=240 Identities=33% Similarity=0.566 Sum_probs=210.9
Q ss_pred CcceEEEEeEEEEeCC-----------eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECC
Q 016804 88 GDVLIDCRNVYKSFGE-----------KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRA 156 (382)
Q Consensus 88 ~~~~I~~~nvs~~yg~-----------~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~ 156 (382)
.+++++++||+|+|.. ..+++||||++.+||++||||+||||||||.|+|+||++|++|+|.++|.+ .
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~-~ 355 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQD-L 355 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcc-c
Confidence 6789999999999972 368999999999999999999999999999999999999999999999987 3
Q ss_pred CCCChhh-hccceEEEEecCC--CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc-cccCCCCCCChHHH
Q 016804 157 GLISDEE-ISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMK 232 (382)
Q Consensus 157 ~~~~~~~-~~~~~Ig~V~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~-~~~~~~~~LSGGqr 232 (382)
....... ..++++-+||||| .|.|.+||++++..++..+......+.++++.++++.+||.. +++++|++||||||
T Consensus 356 ~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQr 435 (539)
T COG1123 356 DLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQR 435 (539)
T ss_pred ccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchh
Confidence 2222211 1234689999998 489999999999998865554445666778999999999975 89999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhch
Q 016804 233 KRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDR 312 (382)
Q Consensus 233 QRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDr 312 (382)
|||+|||||+. +|++|++|||||+||+..+..+.++|++++++-+ .|+|+||||+..++.+|||
T Consensus 436 QRvaIARALa~-------~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g---------~t~lfISHDl~vV~~i~dr 499 (539)
T COG1123 436 QRVAIARALAL-------EPKLLILDEPVSALDVSVQAQVLNLLKDLQEELG---------LTYLFISHDLAVVRYIADR 499 (539)
T ss_pred HHHHHHHHHhc-------CCCEEEecCCccccCHHHHHHHHHHHHHHHHHhC---------CEEEEEeCCHHHHHhhCce
Confidence 99999999986 6999999999999999999999999999998732 6999999999999999998
Q ss_pred hccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 313 LCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 313 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
| +||++|+||+.|++++++ .+++++++.+...
T Consensus 500 v------------------------------~vm~~G~iVE~G~~~~v~~~p~h~Ytr~L~~a 532 (539)
T COG1123 500 V------------------------------AVMYDGRIVEEGPTEKVFENPQHPYTRKLLAA 532 (539)
T ss_pred E------------------------------EEEECCeEEEeCCHHHHhcCCCChHHHHHHHh
Confidence 8 999999999999777765 5789999998864
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-50 Score=386.69 Aligned_cols=237 Identities=28% Similarity=0.462 Sum_probs=199.6
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC--C---CccEEEECCEECCCCCChhh
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA--P---DKGEVYIRGRKRAGLISDEE 163 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~--p---~sG~I~i~G~~i~~~~~~~~ 163 (382)
.++|+++||++.|+++++|+++||+|++||+++|+||||||||||+++|+|+++ | ++|+|+++|+++........
T Consensus 10 ~~~l~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 89 (259)
T PRK14274 10 QEVYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV 89 (259)
T ss_pred CceEEEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence 357999999999998899999999999999999999999999999999999997 3 69999999998743111111
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc----ccccCCCCCCChHHHHHHHHHH
Q 016804 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALAR 239 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~----~~~~~~~~~LSGGqrQRVaIAr 239 (382)
..+.+|||+||++.+|+. |++||+.+.........+++..+++.++++.+++. +..++.+.+||||||||++|||
T Consensus 90 ~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~lar 168 (259)
T PRK14274 90 ELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIAR 168 (259)
T ss_pred HHhhceEEEecCCccccc-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHH
Confidence 123369999999999985 99999987643221123344556678899999985 3568899999999999999999
Q ss_pred HHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccc
Q 016804 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIF 319 (382)
Q Consensus 240 AL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~ 319 (382)
||+. +|++|||||||+|||+.++..+.++|+++.+ + .|+|++||+++++.++|||+
T Consensus 169 al~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~----------~tiiivtH~~~~~~~~~d~i------ 224 (259)
T PRK14274 169 ALAT-------NPDVLLMDEPTSALDPVSTRKIEELILKLKE-K----------YTIVIVTHNMQQAARVSDQT------ 224 (259)
T ss_pred HHhc-------CCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-C----------CEEEEEEcCHHHHHHhCCEE------
Confidence 9997 6999999999999999999999999999965 4 49999999999999999988
Q ss_pred ccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 320 GHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
++|++|+++++|+++++. .+.++.+.+|+.+
T Consensus 225 ------------------------~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 256 (259)
T PRK14274 225 ------------------------AFFYMGELVECNDTNKMFSNPDDQRTLDYITG 256 (259)
T ss_pred ------------------------EEEECCEEEEECCHHHHhhCCCCHHHHHhhcc
Confidence 999999999999888875 4566777777765
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-51 Score=393.05 Aligned_cols=224 Identities=26% Similarity=0.439 Sum_probs=192.6
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
||+++||+++|+++.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..........+.+|+
T Consensus 1 ml~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~ 80 (271)
T PRK13638 1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVA 80 (271)
T ss_pred CeEEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheE
Confidence 58999999999988899999999999999999999999999999999999999999999999987421111111223699
Q ss_pred EEecCCCC-CCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 171 LVFQSAAL-FDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 171 ~V~Q~~~l-~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
|+||++.+ +...|+.+|+.+.... .+....+..+++.++++.+|+.++.++++.+||||||||++|||||+.
T Consensus 81 ~v~q~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~------ 153 (271)
T PRK13638 81 TVFQDPEQQIFYTDIDSDIAFSLRN-LGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVL------ 153 (271)
T ss_pred EEeeChhhccccccHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHc------
Confidence 99999863 3346899999876432 233445556678889999999988999999999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
+|++|||||||+|||+.++..+.++|++++++| .|||++|||++++..+|||+
T Consensus 154 -~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g----------~tii~vtH~~~~~~~~~d~i---------------- 206 (271)
T PRK13638 154 -QARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQG----------NHVIISSHDIDLIYEISDAV---------------- 206 (271)
T ss_pred -CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHhCCEE----------------
Confidence 699999999999999999999999999998765 59999999999999999988
Q ss_pred cCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 330 AVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|++++.|++.++..
T Consensus 207 --------------~~l~~G~i~~~g~~~~~~~ 225 (271)
T PRK13638 207 --------------YVLRQGQILTHGAPGEVFA 225 (271)
T ss_pred --------------EEEECCEEEEeCCHHHHhc
Confidence 9999999999998777643
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-50 Score=384.52 Aligned_cols=237 Identities=28% Similarity=0.455 Sum_probs=200.7
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEECCCCCChhhh
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLISDEEI 164 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p-----~sG~I~i~G~~i~~~~~~~~~ 164 (382)
++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|+++|+++.........
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (251)
T PRK14270 3 IKMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVE 82 (251)
T ss_pred cEEEEEEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHH
Confidence 679999999999988899999999999999999999999999999999999875 899999999987532111111
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc----ccccCCCCCCChHHHHHHHHHHH
Q 016804 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALARS 240 (382)
Q Consensus 165 ~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~----~~~~~~~~~LSGGqrQRVaIArA 240 (382)
.+.+++|+||++.+|+ +|++||+.+...........+..+++.++++.+++. +..++++.+||||||||++||||
T Consensus 83 ~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 161 (251)
T PRK14270 83 LRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIART 161 (251)
T ss_pred HHhheEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHH
Confidence 2336999999999997 899999987653222112344556678899999874 45788999999999999999999
Q ss_pred HhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccc
Q 016804 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFG 320 (382)
Q Consensus 241 L~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~ 320 (382)
|+. +|++|||||||+|||+.++..+.++|+++.++ .|+|++||+++++.++|||+
T Consensus 162 l~~-------~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~-----------~tiiivsH~~~~~~~~~d~v------- 216 (251)
T PRK14270 162 IAV-------KPDVILMDEPTSALDPISTLKIEDLMVELKKE-----------YTIVIVTHNMQQASRVSDYT------- 216 (251)
T ss_pred Hhc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-----------CeEEEEEcCHHHHHHhcCEE-------
Confidence 997 69999999999999999999999999999763 49999999999999999988
Q ss_pred cchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcCC
Q 016804 321 HIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASGS 375 (382)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~~ 375 (382)
++|++|++++.|+++++. .+.++.+.+|+...
T Consensus 217 -----------------------~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (251)
T PRK14270 217 -----------------------AFFLMGDLIEFNKTEKIFLEPQKKETEDYISGR 249 (251)
T ss_pred -----------------------EEEECCeEEEeCCHHHHhcCCCChHHHHhhccc
Confidence 999999999999888875 45677888777543
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-51 Score=394.28 Aligned_cols=224 Identities=29% Similarity=0.538 Sum_probs=194.1
Q ss_pred ceEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 90 VLIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 90 ~~I~~~nvs~~yg-~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
++|+++||+++|+ ++.+|+++||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++..........+.+
T Consensus 4 ~~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 4 YILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred ceEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 4799999999996 577999999999999999999999999999999999999999999999999874211111112236
Q ss_pred EEEEecCC--CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCC
Q 016804 169 IGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT 246 (382)
Q Consensus 169 Ig~V~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~ 246 (382)
|||+||++ .+++ .|++||+.++.... +.+..+..+++.++++.+||.++.++++.+||||||||++|||||+.
T Consensus 84 ig~v~q~~~~~~~~-~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~--- 158 (283)
T PRK13636 84 VGMVFQDPDNQLFS-ASVYQDVSFGAVNL-KLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVM--- 158 (283)
T ss_pred EEEEecCcchhhcc-ccHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHc---
Confidence 99999997 3454 79999998865322 34455556778999999999999999999999999999999999997
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchhe
Q 016804 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVV 325 (382)
Q Consensus 247 ~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~ 325 (382)
+|++|||||||+|||+.++..+.++|++++++ | .|||++|||++++..+|||+
T Consensus 159 ----~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g----------~tillvsH~~~~~~~~~dri------------ 212 (283)
T PRK13636 159 ----EPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELG----------LTIIIATHDIDIVPLYCDNV------------ 212 (283)
T ss_pred ----CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCC----------CEEEEEecCHHHHHHhCCEE------------
Confidence 69999999999999999999999999999875 5 59999999999999999988
Q ss_pred ehhccCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 326 IILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 326 ~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|++++.|+++++..
T Consensus 213 ------------------~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 213 ------------------FVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred ------------------EEEECCEEEEeCCHHHHhc
Confidence 9999999999998877653
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-51 Score=395.11 Aligned_cols=222 Identities=31% Similarity=0.483 Sum_probs=192.0
Q ss_pred eEEEEeEEEEeCC-----eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCC--hhh
Q 016804 91 LIDCRNVYKSFGE-----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS--DEE 163 (382)
Q Consensus 91 ~I~~~nvs~~yg~-----~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~--~~~ 163 (382)
+|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..... ...
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 5899999999974 469999999999999999999999999999999999999999999999998743211 111
Q ss_pred hccceEEEEecCC--CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHHHHH
Q 016804 164 ISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARS 240 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaIArA 240 (382)
..+..|||+||++ .+| .+||+||+.++.... ....++..+++.++++.+||+ ++.++++.+||||||||++||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~lara 159 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNF-GFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGV 159 (287)
T ss_pred HHHhceEEEEeChhhhhc-cchHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHH
Confidence 1233699999997 456 479999998765322 244555667789999999997 68899999999999999999999
Q ss_pred HhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccc
Q 016804 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFG 320 (382)
Q Consensus 241 L~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~ 320 (382)
|+. +|++|||||||+|||+.++..+.++|++++++| .|||++|||++++.++|||+
T Consensus 160 l~~-------~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g----------~tvlivsH~~~~~~~~~d~v------- 215 (287)
T PRK13641 160 MAY-------EPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAG----------HTVILVTHNMDDVAEYADDV------- 215 (287)
T ss_pred HHc-------CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHhCCEE-------
Confidence 997 699999999999999999999999999997665 59999999999999999988
Q ss_pred cchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 321 HIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.|+++++.
T Consensus 216 -----------------------~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 216 -----------------------LVLEHGKLIKHASPKEIF 233 (287)
T ss_pred -----------------------EEEECCEEEEeCCHHHHh
Confidence 999999999999877754
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-51 Score=378.75 Aligned_cols=204 Identities=37% Similarity=0.632 Sum_probs=175.2
Q ss_pred eEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhh--h
Q 016804 91 LIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE--I 164 (382)
Q Consensus 91 ~I~~~nvs~~yg~----~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~--~ 164 (382)
+|+++||+++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++........ .
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKL 80 (221)
T ss_pred CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHH
Confidence 4789999999964 579999999999999999999999999999999999999999999999998754322111 1
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcC
Q 016804 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFD 244 (382)
Q Consensus 165 ~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~ 244 (382)
.+.+|+|+||++.+|+.+|++||+.+..... .....+..+++.++++.+|+.+..++++.+|||||||||+|||||+.
T Consensus 81 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~- 158 (221)
T TIGR02211 81 RNKKLGFIYQFHHLLPDFTALENVAMPLLIG-KKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVN- 158 (221)
T ss_pred HHhcEEEEecccccCCCCcHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhC-
Confidence 1236999999999998899999998854321 23333445667889999999988999999999999999999999997
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 245 ~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|++|||||||+|||+.++..+.+.|++++++ + .|+|++|||++++.. ||++
T Consensus 159 ------~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tii~~tH~~~~~~~-~d~v 211 (221)
T TIGR02211 159 ------QPSLVLADEPTGNLDNNNAKIIFDLMLELNRELN----------TSFLVVTHDLELAKK-LDRV 211 (221)
T ss_pred ------CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHhh-cCEE
Confidence 69999999999999999999999999999765 4 599999999998865 6877
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-50 Score=388.68 Aligned_cols=239 Identities=28% Similarity=0.465 Sum_probs=199.3
Q ss_pred CCcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEECCCCCCh
Q 016804 87 DGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-----PDKGEVYIRGRKRAGLISD 161 (382)
Q Consensus 87 ~~~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~-----p~sG~I~i~G~~i~~~~~~ 161 (382)
...++|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+.+ |++|+|+++|+++......
T Consensus 17 ~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 96 (268)
T PRK14248 17 AKEHILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNIN 96 (268)
T ss_pred CCCceEEEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccccc
Confidence 34568999999999998889999999999999999999999999999999999865 7999999999987532111
Q ss_pred hhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc----ccccCCCCCCChHHHHHHHH
Q 016804 162 EEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVAL 237 (382)
Q Consensus 162 ~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~----~~~~~~~~~LSGGqrQRVaI 237 (382)
....+.+|+|+||++.+|+. |++||+.++............++.+.++++.+++. +..++.+.+||||||||++|
T Consensus 97 ~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~l 175 (268)
T PRK14248 97 VVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCI 175 (268)
T ss_pred HHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHH
Confidence 11123369999999999985 99999987643221112233455677889999884 45688999999999999999
Q ss_pred HHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccc
Q 016804 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQ 317 (382)
Q Consensus 238 ArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~ 317 (382)
||||+. +|++|||||||+|||+.++..+.++|+++.+ + .|||++|||++++.++|||+
T Consensus 176 aral~~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~----------~tiii~tH~~~~~~~~~d~v---- 233 (268)
T PRK14248 176 ARTLAM-------KPAVLLLDEPASALDPISNAKIEELITELKE-E----------YSIIIVTHNMQQALRVSDRT---- 233 (268)
T ss_pred HHHHhC-------CCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-C----------CEEEEEEeCHHHHHHhCCEE----
Confidence 999997 6999999999999999999999999999965 3 49999999999999999988
Q ss_pred ccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 318 IFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
++|++|++++.|+++++. .+.++.+..++.+
T Consensus 234 --------------------------~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~ 265 (268)
T PRK14248 234 --------------------------AFFLNGDLVEYDQTEQIFTSPKQQKTEDYING 265 (268)
T ss_pred --------------------------EEEECCEEEEeCCHHHHHhCCCChHHHHHHhc
Confidence 999999999999888765 3466777777765
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-50 Score=383.58 Aligned_cols=236 Identities=33% Similarity=0.512 Sum_probs=197.5
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC---CCC--CccEEEECCEECCCCCChhhh
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL---LAP--DKGEVYIRGRKRAGLISDEEI 164 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl---~~p--~sG~I~i~G~~i~~~~~~~~~ 164 (382)
++|+++|+++.|+++++|+|+||+|++||+++|+||||||||||+++|+|+ .+| ++|+|.++|+++.........
T Consensus 2 ~~l~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14245 2 VKIDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDE 81 (250)
T ss_pred cEEEEEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHH
Confidence 579999999999988999999999999999999999999999999999997 455 599999999987532111111
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc----cccCCCCCCChHHHHHHHHHHH
Q 016804 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG----VEDRLPSELSGGMKKRVALARS 240 (382)
Q Consensus 165 ~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~----~~~~~~~~LSGGqrQRVaIArA 240 (382)
.+.+|+|+||++.+|+ .|++||+.++.........+...+.+.++++.+++.+ ..++.+.+||||||||++||||
T Consensus 82 ~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 160 (250)
T PRK14245 82 LRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARA 160 (250)
T ss_pred HhhheEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHH
Confidence 2336999999999987 6999999876532211123345567788999999853 5688899999999999999999
Q ss_pred HhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccc
Q 016804 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFG 320 (382)
Q Consensus 241 L~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~ 320 (382)
|+. +|++|||||||+|||+.++..+.++|+++.+ + .|||++|||++++.++|||+
T Consensus 161 l~~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~----------~tiiivtH~~~~~~~~~d~v------- 215 (250)
T PRK14245 161 MAV-------SPSVLLMDEPASALDPISTAKVEELIHELKK-D----------YTIVIVTHNMQQAARVSDKT------- 215 (250)
T ss_pred Hhc-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-C----------CeEEEEeCCHHHHHhhCCEE-------
Confidence 997 6999999999999999999999999999954 4 49999999999999999988
Q ss_pred cchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 321 HIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
++|++|++++.|+++++. ++.++.+.+|+.+
T Consensus 216 -----------------------~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (250)
T PRK14245 216 -----------------------AFFYMGEMVEYDDTKKIFTNPEKEATQNYITG 247 (250)
T ss_pred -----------------------EEEECCEEEEECCHHHHhcCCCChHHHHhhcc
Confidence 999999999999888875 4456777776654
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-51 Score=394.95 Aligned_cols=223 Identities=29% Similarity=0.478 Sum_probs=193.2
Q ss_pred eEEEEeEEEEeCC-----eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCCh--hh
Q 016804 91 LIDCRNVYKSFGE-----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD--EE 163 (382)
Q Consensus 91 ~I~~~nvs~~yg~-----~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~--~~ 163 (382)
.|+++||+|+|++ +++|+||||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++...... ..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 4899999999963 3699999999999999999999999999999999999999999999999987532111 11
Q ss_pred hccceEEEEecCC--CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHHHHH
Q 016804 164 ISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARS 240 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaIArA 240 (382)
..+.+||||||++ .+|+ .||+||+.++... .+.+..+..+++.++++.+||. +..++.+.+|||||||||+||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~-~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lara 159 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFE-DTVEREIIFGPKN-FKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSI 159 (286)
T ss_pred HHHhheEEEecChHhccch-hhHHHHHHhhHHH-cCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHH
Confidence 1233699999997 5676 5999999987532 2345566677889999999997 68899999999999999999999
Q ss_pred HhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccc
Q 016804 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIF 319 (382)
Q Consensus 241 L~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~ 319 (382)
|+. +|++|||||||+|||+.++..+.++|++++++ | .|||+||||++++.++|||+
T Consensus 160 L~~-------~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g----------~tvl~vtH~~~~~~~~~dri------ 216 (286)
T PRK13646 160 LAM-------NPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDEN----------KTIILVSHDMNEVARYADEV------ 216 (286)
T ss_pred HHh-------CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCC----------CEEEEEecCHHHHHHhCCEE------
Confidence 997 69999999999999999999999999999764 5 59999999999999999988
Q ss_pred ccchheehhccCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 320 GHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|++++.|++.++..
T Consensus 217 ------------------------~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 217 ------------------------IVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred ------------------------EEEECCEEEEECCHHHHHh
Confidence 9999999999998877653
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-51 Score=390.21 Aligned_cols=225 Identities=28% Similarity=0.405 Sum_probs=195.2
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
+++|+++||+++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... .... +..
T Consensus 9 ~~~l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~-~~~ 86 (265)
T PRK10575 9 DTTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWS-SKAF-ARK 86 (265)
T ss_pred CceEEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCC-HHHH-hhh
Confidence 46799999999999889999999999999999999999999999999999999999999999999875422 2222 236
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCC---CCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCC
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSK---MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~---~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~ 245 (382)
++|+||++.+++.+|+.||+.++...... .......+++.++++.+++.+..++++.+|||||||||+|||||+.
T Consensus 87 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~-- 164 (265)
T PRK10575 87 VAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQ-- 164 (265)
T ss_pred eEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhc--
Confidence 99999999888889999999875321110 1122345667889999999988999999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchh
Q 016804 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDV 324 (382)
Q Consensus 246 ~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~ 324 (382)
+|+||||||||+|||+.++..+.++|++++++ + .|+|++||+++++.++|||+
T Consensus 165 -----~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~----------~tiii~sH~~~~i~~~~d~i----------- 218 (265)
T PRK10575 165 -----DSRCLLLDEPTSALDIAHQVDVLALVHRLSQERG----------LTVIAVLHDINMAARYCDYL----------- 218 (265)
T ss_pred -----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEE-----------
Confidence 69999999999999999999999999999765 5 59999999999999999988
Q ss_pred eehhccCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 325 VIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|++++.|++.++..
T Consensus 219 -------------------~~l~~G~i~~~~~~~~~~~ 237 (265)
T PRK10575 219 -------------------VALRGGEMIAQGTPAELMR 237 (265)
T ss_pred -------------------EEEECCeEEEecCHHHhcC
Confidence 9999999999998777653
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-51 Score=387.22 Aligned_cols=231 Identities=28% Similarity=0.426 Sum_probs=197.5
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
+|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ...+. +..++
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~-~~~i~ 79 (255)
T PRK11231 2 TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISML-SSRQL-ARRLA 79 (255)
T ss_pred EEEEEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHC-CHHHH-hhheE
Confidence 68999999999988999999999999999999999999999999999999999999999999986432 12222 23599
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhc---CCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYEN---SKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~---~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~ 247 (382)
|+||++.+++.+|++||+.++.... .........+++.++++.+|+.+..++++.+|||||||||+|||||+.
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~---- 155 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQ---- 155 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhc----
Confidence 9999999988899999998753111 111123345567889999999988999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheeh
Q 016804 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVII 327 (382)
Q Consensus 248 ~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~ 327 (382)
+|++|||||||+|||+.++..+.++|+++.+++ .|+|++||+++++.++|||+
T Consensus 156 ---~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~----------~tiii~tH~~~~~~~~~d~i-------------- 208 (255)
T PRK11231 156 ---DTPVVLLDEPTTYLDINHQVELMRLMRELNTQG----------KTVVTVLHDLNQASRYCDHL-------------- 208 (255)
T ss_pred ---CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCC----------CEEEEEECCHHHHHHhcCEE--------------
Confidence 699999999999999999999999999997765 59999999999999999988
Q ss_pred hccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHH
Q 016804 328 LGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFA 372 (382)
Q Consensus 328 ~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 372 (382)
++|++|++++.|+++++.. .+.+.+++
T Consensus 209 ----------------~~l~~G~i~~~~~~~~~~~--~~~~~~~~ 235 (255)
T PRK11231 209 ----------------VVLANGHVMAQGTPEEVMT--PGLLRTVF 235 (255)
T ss_pred ----------------EEEECCeEEEEcCHHHhcC--HHHHHHHh
Confidence 9999999999998777653 23444544
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-51 Score=388.22 Aligned_cols=228 Identities=34% Similarity=0.490 Sum_probs=193.5
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
+|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.... .... +.+++
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~-~~~~-~~~i~ 79 (258)
T PRK13548 2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWS-PAEL-ARRRA 79 (258)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCC-HHHh-hhheE
Confidence 589999999999889999999999999999999999999999999999999999999999999865432 1221 23699
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
|+||++.+++.+||+||+.+..... ....++..+.+.++++.+|+.+..++.+.+|||||||||+|||||+..+.. -.
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~-~~ 157 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPH-GLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEP-DG 157 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhccc-CCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccc-CC
Confidence 9999999877899999998854221 122233455678899999999889999999999999999999999930000 01
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVH-KKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~-~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
+|++|||||||+|||+.++..+.++|+++. +++ .|||++|||++++.++|||+
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tiii~sH~~~~~~~~~d~i---------------- 211 (258)
T PRK13548 158 PPRWLLLDEPTSALDLAHQHHVLRLARQLAHERG----------LAVIVVLHDLNLAARYADRI---------------- 211 (258)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEECCHHHHHHhcCEE----------------
Confidence 599999999999999999999999999997 445 59999999999999999988
Q ss_pred cCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 330 AVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|++++.|+++++..
T Consensus 212 --------------~~l~~G~i~~~~~~~~~~~ 230 (258)
T PRK13548 212 --------------VLLHQGRLVADGTPAEVLT 230 (258)
T ss_pred --------------EEEECCEEEeeCCHHHHhC
Confidence 9999999999998777653
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-50 Score=378.52 Aligned_cols=216 Identities=35% Similarity=0.530 Sum_probs=186.4
Q ss_pred ceEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChh--h
Q 016804 90 VLIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE--E 163 (382)
Q Consensus 90 ~~I~~~nvs~~yg~----~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~--~ 163 (382)
++|+++||+++|++ ..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++....... .
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 84 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHH
Confidence 57999999999975 35999999999999999999999999999999999999999999999999875432211 1
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhc
Q 016804 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIF 243 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~ 243 (382)
..+.+++|+||++.+++.+|++||+.+..... .....+..+++.++++.+++.+..++++.+||||||||++|||||+.
T Consensus 85 ~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~ 163 (228)
T PRK10584 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLR-GESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNG 163 (228)
T ss_pred HHhheEEEEEcccccCCCcCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 11236999999999999899999998764322 23344556778899999999988899999999999999999999997
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccc
Q 016804 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHI 322 (382)
Q Consensus 244 ~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~ 322 (382)
+|++|||||||+|||+.++..+.+.|++++++ + .|||++|||++++.. ||++
T Consensus 164 -------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tii~~sH~~~~~~~-~d~i--------- 216 (228)
T PRK10584 164 -------RPDVLFADEPTGNLDRQTGDKIADLLFSLNREHG----------TTLILVTHDLQLAAR-CDRR--------- 216 (228)
T ss_pred -------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC----------CEEEEEecCHHHHHh-CCEE---------
Confidence 69999999999999999999999999999765 4 599999999998854 8877
Q ss_pred hheehhccCCCCcccccccEEEEEeCCeEEEE
Q 016804 323 DVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQ 354 (382)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~ 354 (382)
++|++|++++.
T Consensus 217 ---------------------~~l~~g~i~~~ 227 (228)
T PRK10584 217 ---------------------LRLVNGQLQEE 227 (228)
T ss_pred ---------------------EEEECCEEEec
Confidence 99999999753
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-50 Score=385.53 Aligned_cols=236 Identities=32% Similarity=0.502 Sum_probs=198.3
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEECCCCCChhhhc
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLISDEEIS 165 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p-----~sG~I~i~G~~i~~~~~~~~~~ 165 (382)
+|+++||+++|+++++|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++..........
T Consensus 4 ~l~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~ 83 (258)
T PRK14241 4 RIDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAV 83 (258)
T ss_pred cEEEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHH
Confidence 58999999999988999999999999999999999999999999999999974 7999999999864211111112
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc----ccccCCCCCCChHHHHHHHHHHHH
Q 016804 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALARSI 241 (382)
Q Consensus 166 ~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~----~~~~~~~~~LSGGqrQRVaIArAL 241 (382)
+..|+|+||++.+|+.+|++||+.++..........+..+++.++++.+|+. +..++.+.+|||||||||+|||||
T Consensus 84 ~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 163 (258)
T PRK14241 84 RRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAI 163 (258)
T ss_pred hcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 3369999999999998999999987653222123445566788899999984 467889999999999999999999
Q ss_pred hcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccccc
Q 016804 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGH 321 (382)
Q Consensus 242 ~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~ 321 (382)
+. +|++|||||||+|||+.++..+.++|+++++ + .|+|++||+++++.++|||+
T Consensus 164 ~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~----------~tviivsH~~~~~~~~~d~i-------- 217 (258)
T PRK14241 164 AV-------EPDVLLMDEPCSALDPISTLAIEDLINELKQ-D----------YTIVIVTHNMQQAARVSDQT-------- 217 (258)
T ss_pred hc-------CCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-C----------CEEEEEecCHHHHHHhCCEE--------
Confidence 97 6999999999999999999999999999964 3 49999999999999999988
Q ss_pred chheehhccCCCCcccccccEEEEEe------CCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 322 IDVVIILGAVAPDKEVFFIYRLIFLY------EGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~ii~l~------~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
++|+ +|+|++.|+++++. .+.++.+.+++.+
T Consensus 218 ----------------------~~l~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~ 255 (258)
T PRK14241 218 ----------------------AFFNLEATGKPGRLVEIDDTEKIFSNPTQKATEDYISG 255 (258)
T ss_pred ----------------------EEEecccCCCCceEEecCCHHHHHhCcCcHHHHHHHhh
Confidence 7886 79999999888875 3445666776654
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-50 Score=385.42 Aligned_cols=237 Identities=32% Similarity=0.517 Sum_probs=199.5
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEE-----CCCCCChhh-
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK-----RAGLISDEE- 163 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~-----i~~~~~~~~- 163 (382)
++|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|++ +........
T Consensus 5 ~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~ 84 (258)
T PRK11701 5 PLLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERR 84 (258)
T ss_pred ceEEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHH
Confidence 47999999999988889999999999999999999999999999999999999999999999987 543211111
Q ss_pred -hccceEEEEecCC--CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHHHH
Q 016804 164 -ISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALAR 239 (382)
Q Consensus 164 -~~~~~Ig~V~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaIAr 239 (382)
..+..++|+||++ .+++.+|+++|+.+...........+..+.+.++++.+++. ...++.+.+||||||||++|||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~lar 164 (258)
T PRK11701 85 RLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIAR 164 (258)
T ss_pred HHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHH
Confidence 1123599999998 36777899999977542221122334566788999999997 4788999999999999999999
Q ss_pred HHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccc
Q 016804 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQI 318 (382)
Q Consensus 240 AL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~ 318 (382)
||+. +|++|||||||++||+.++..+.+.|+++.++ | .|+|++|||++++.++||++
T Consensus 165 al~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tii~isH~~~~~~~~~d~i----- 222 (258)
T PRK11701 165 NLVT-------HPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELG----------LAVVIVTHDLAVARLLAHRL----- 222 (258)
T ss_pred HHhc-------CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC----------cEEEEEeCCHHHHHHhcCEE-----
Confidence 9997 69999999999999999999999999999765 4 59999999999999999988
Q ss_pred cccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHc
Q 016804 319 FGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFAS 373 (382)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~ 373 (382)
++|++|++++.|+++++. ++.+++...|+.
T Consensus 223 -------------------------~~l~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 253 (258)
T PRK11701 223 -------------------------LVMKQGRVVESGLTDQVLDDPQHPYTQLLVS 253 (258)
T ss_pred -------------------------EEEECCEEEEeCCHHHHhcCCCCHHHHHHHH
Confidence 999999999999888875 345566666654
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-51 Score=377.96 Aligned_cols=194 Identities=31% Similarity=0.509 Sum_probs=169.5
Q ss_pred EEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 93 DCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 93 ~~~nvs~~yg~-~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
+++||+++|++ +++|+++||+|++||+++|+|||||||||||++|+|+++|++|+|+++|+++.. .. .+.+|+|
T Consensus 1 ~~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~----~~-~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA----KE-RRKSIGY 75 (205)
T ss_pred CcccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh----HH-hhcceEE
Confidence 46899999987 789999999999999999999999999999999999999999999999998632 11 2236999
Q ss_pred EecCCC-CCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 172 VFQSAA-LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 172 V~Q~~~-l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
+||++. .+..+|++||+.++.... . . ..+++.++++.+|+.++.++++.+||||||||++|||||+.
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~-~--~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~------- 143 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKEL-D--A--GNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLS------- 143 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhc-C--c--cHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHh-------
Confidence 999974 233579999998754321 1 1 12457889999999999999999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|++|||||||+|||+.++..+.++|+++++++ .|+|++|||++++.++|||+
T Consensus 144 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tii~~sH~~~~~~~~~d~i 196 (205)
T cd03226 144 GKDLLIFDEPTSGLDYKNMERVGELIRELAAQG----------KAVIVITHDYEFLAKVCDRV 196 (205)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHhCCEE
Confidence 699999999999999999999999999997765 59999999999999999988
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-50 Score=381.39 Aligned_cols=222 Identities=27% Similarity=0.408 Sum_probs=189.6
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC--CCCccEEEECCEECCCCCChhhhccceE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL--APDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~--~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
|+++||+++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+. +|++|+|.++|+++.... .....+.++
T Consensus 1 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~-~~~~~~~~i 79 (243)
T TIGR01978 1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELE-PDERARAGL 79 (243)
T ss_pred CeEeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCC-HHHhhccce
Confidence 47899999999889999999999999999999999999999999999995 799999999999875432 222223359
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCC------CCHHHHHHHHHHHHHHcCCc-ccccCCCC-CCChHHHHHHHHHHHH
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSK------MRDEQISELVKENLAAVGLK-GVEDRLPS-ELSGGMKKRVALARSI 241 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~------~~~~~~~~~v~~~L~~~gL~-~~~~~~~~-~LSGGqrQRVaIArAL 241 (382)
+|+||++.+|+.+|+.||+.+....... ....+..+++.++++.+|+. ...++.+. +|||||||||+|||||
T Consensus 80 ~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al 159 (243)
T TIGR01978 80 FLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMA 159 (243)
T ss_pred EeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHH
Confidence 9999999999999999999875432111 12234456788999999997 56788887 5999999999999999
Q ss_pred hcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHh-hchhccccccc
Q 016804 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA-VDRLCLFQIFG 320 (382)
Q Consensus 242 ~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~-aDrv~~~~~~~ 320 (382)
+. +|++|||||||++||+.++..+.++|+++++++ .|+|++|||++++..+ ||++
T Consensus 160 ~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tvi~vsH~~~~~~~~~~d~i------- 215 (243)
T TIGR01978 160 LL-------EPKLAILDEIDSGLDIDALKIVAEGINRLREPD----------RSFLIITHYQRLLNYIKPDYV------- 215 (243)
T ss_pred hc-------CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCC----------cEEEEEEecHHHHHhhcCCeE-------
Confidence 97 699999999999999999999999999997765 5999999999999998 7887
Q ss_pred cchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 321 HIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.|+++++.
T Consensus 216 -----------------------~~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 216 -----------------------HVLLDGRIVKSGDVELAK 233 (243)
T ss_pred -----------------------EEEeCCEEEEecCHHHhc
Confidence 999999999999776543
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-50 Score=385.84 Aligned_cols=212 Identities=30% Similarity=0.541 Sum_probs=188.2
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
||+++|++++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... ..+++
T Consensus 1 ml~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-------~~~~~ 73 (255)
T PRK11248 1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-------GAERG 73 (255)
T ss_pred CEEEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-------CCcEE
Confidence 58999999999888899999999999999999999999999999999999999999999999986421 12589
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
|+||++.+|+.+||.||+.++... .+....+..+++.++++.+||.+..++++.+|||||||||+|||||+.
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~------- 145 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQL-AGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAA------- 145 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHH-cCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhc-------
Confidence 999999999889999999876432 223444455678899999999988899999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
+|++|||||||+|||+.++..+.++|+++.++ | .|+|++|||++++..+|||+
T Consensus 146 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g----------~tviivsH~~~~~~~~~d~i---------------- 199 (255)
T PRK11248 146 NPQLLLLDEPFGALDAFTREQMQTLLLKLWQETG----------KQVLLITHDIEEAVFMATEL---------------- 199 (255)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEE----------------
Confidence 69999999999999999999999999999653 5 59999999999999999988
Q ss_pred cCCCCcccccccEEEEEe--CCeEEEEecc
Q 016804 330 AVAPDKEVFFIYRLIFLY--EGKIVWQGMT 357 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l~--~G~i~~~g~~ 357 (382)
++|+ +|++++.++.
T Consensus 200 --------------~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 200 --------------VLLSPGPGRVVERLPL 215 (255)
T ss_pred --------------EEEeCCCcEEEEEecC
Confidence 8898 5999988754
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-51 Score=379.79 Aligned_cols=232 Identities=30% Similarity=0.500 Sum_probs=202.3
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
+|++++||+..||..++|++|||++++||+++|+||||||||||||+|+|+.+|.+|+|.++|+|+.... ...+.+..|
T Consensus 2 ~mL~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p-~~~r~r~Gi 80 (237)
T COG0410 2 PMLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLP-PHERARLGI 80 (237)
T ss_pred CceeEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCC-HHHHHhCCe
Confidence 5799999999999999999999999999999999999999999999999999999999999999998864 444556679
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHc-CCcccccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAV-GLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~-gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~ 248 (382)
+||||...+|+.+||+||+..+.+.... ++.....++++.+.| .|.+..+++..+|||||||.+||||||+.
T Consensus 81 ~~VPegR~iF~~LTVeENL~~g~~~~~~--~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~----- 153 (237)
T COG0410 81 AYVPEGRRIFPRLTVEENLLLGAYARRD--KEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMS----- 153 (237)
T ss_pred EeCcccccchhhCcHHHHHhhhhhcccc--cccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhc-----
Confidence 9999999999999999999988654332 111122256677777 36788999999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehh
Q 016804 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIIL 328 (382)
Q Consensus 249 a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~ 328 (382)
+|++|||||||.||-|.-.+++++.|+++++++. +||++|.++...+.+++||.
T Consensus 154 --~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g---------~tIlLVEQn~~~Al~iaDr~--------------- 207 (237)
T COG0410 154 --RPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGG---------MTILLVEQNARFALEIADRG--------------- 207 (237)
T ss_pred --CCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCC---------cEEEEEeccHHHHHHhhCEE---------------
Confidence 6999999999999999999999999999997742 69999999999999999988
Q ss_pred ccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHH
Q 016804 329 GAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFA 372 (382)
Q Consensus 329 ~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 372 (382)
++|.+|+|+++|+.+++.. ++.+.+.+
T Consensus 208 ---------------yvle~Griv~~G~~~eL~~--~~~v~~~y 234 (237)
T COG0410 208 ---------------YVLENGRIVLSGTAAELLA--DPDVREAY 234 (237)
T ss_pred ---------------EEEeCCEEEEecCHHHHhc--CHHHHHHh
Confidence 8899999999998888764 34444433
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-50 Score=386.14 Aligned_cols=238 Identities=31% Similarity=0.475 Sum_probs=199.5
Q ss_pred CcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEECCCCCChh
Q 016804 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLISDE 162 (382)
Q Consensus 88 ~~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p-----~sG~I~i~G~~i~~~~~~~ 162 (382)
.+++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++.......
T Consensus 16 ~~~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~ 95 (267)
T PRK14235 16 TEIKMRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDV 95 (267)
T ss_pred CCceEEEEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccch
Confidence 34579999999999988999999999999999999999999999999999999975 8999999999875311111
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCC-CCHHHHHHHHHHHHHHcCCcc----cccCCCCCCChHHHHHHHH
Q 016804 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSK-MRDEQISELVKENLAAVGLKG----VEDRLPSELSGGMKKRVAL 237 (382)
Q Consensus 163 ~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~-~~~~~~~~~v~~~L~~~gL~~----~~~~~~~~LSGGqrQRVaI 237 (382)
...+.+|+|+||++.+|+. |+.||+.++...+.. ....+..+++.++++.+|+.+ ..++.+.+||||||||++|
T Consensus 96 ~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~l 174 (267)
T PRK14235 96 VELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCI 174 (267)
T ss_pred HHHhhceEEEecCCCCCCC-cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHH
Confidence 1123369999999999984 999999886532211 123344567888999999953 4678899999999999999
Q ss_pred HHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccc
Q 016804 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQ 317 (382)
Q Consensus 238 ArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~ 317 (382)
||||+. +|++|||||||+|||+.++..+.++|+++.+ + .|+|++|||++++..+|||+
T Consensus 175 aral~~-------~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~----------~tiiivtH~~~~~~~~~d~v---- 232 (267)
T PRK14235 175 ARAIAV-------SPEVILMDEPCSALDPIATAKVEELIDELRQ-N----------YTIVIVTHSMQQAARVSQRT---- 232 (267)
T ss_pred HHHHHc-------CCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-C----------CeEEEEEcCHHHHHhhCCEE----
Confidence 999997 6999999999999999999999999999965 4 49999999999999999988
Q ss_pred ccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 318 IFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
++|++|++++.|+++++. .+.++.+.+|+.+
T Consensus 233 --------------------------~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 264 (267)
T PRK14235 233 --------------------------AFFHLGNLVEVGDTEKMFTNPDDPRTQDYITG 264 (267)
T ss_pred --------------------------EEEECCEEEEeCCHHHHHhCCCCHHHHHHhhc
Confidence 999999999999888875 3456677776654
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-50 Score=381.66 Aligned_cols=236 Identities=26% Similarity=0.421 Sum_probs=196.5
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC--CC---CccEEEECCEECCCCCChhhh
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL--AP---DKGEVYIRGRKRAGLISDEEI 164 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~--~p---~sG~I~i~G~~i~~~~~~~~~ 164 (382)
++|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+. +| ++|+|+++|+++.........
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 83 (252)
T PRK14239 4 PILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVD 83 (252)
T ss_pred ceEEEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHh
Confidence 4799999999999888999999999999999999999999999999999995 46 599999999987432111111
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc----ccccCCCCCCChHHHHHHHHHHH
Q 016804 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALARS 240 (382)
Q Consensus 165 ~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~----~~~~~~~~~LSGGqrQRVaIArA 240 (382)
.+.+++|+||++.+|+ +|++||+.++.............+.+.++++.+++. +..++.+.+|||||||||+||||
T Consensus 84 ~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 162 (252)
T PRK14239 84 LRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARV 162 (252)
T ss_pred hhhcEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHH
Confidence 1336999999999997 799999988643221112333456678889999874 45688999999999999999999
Q ss_pred HhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccc
Q 016804 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFG 320 (382)
Q Consensus 241 L~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~ 320 (382)
|+. +|++|||||||+|||+.++..+.++|+++.+ + .|+|++|||++++.++|||+
T Consensus 163 l~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~----------~tii~~sH~~~~~~~~~d~i------- 217 (252)
T PRK14239 163 LAT-------SPKIILLDEPTSALDPISAGKIEETLLGLKD-D----------YTMLLVTRSMQQASRISDRT------- 217 (252)
T ss_pred Hhc-------CCCEEEEcCCccccCHHHHHHHHHHHHHHhh-C----------CeEEEEECCHHHHHHhCCEE-------
Confidence 997 6999999999999999999999999999965 3 49999999999999999988
Q ss_pred cchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 321 HIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
++|++|++++.|+..++. .+.++.+.+++.+
T Consensus 218 -----------------------~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 249 (252)
T PRK14239 218 -----------------------GFFLDGDLIEYNDTKQMFMNPKHKETEDYISG 249 (252)
T ss_pred -----------------------EEEECCEEEEeCCHHHHHhCCCCHHHHHHHhh
Confidence 999999999999888875 3455666666543
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-50 Score=390.60 Aligned_cols=221 Identities=35% Similarity=0.536 Sum_probs=191.9
Q ss_pred eEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 91 LIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 91 ~I~~~nvs~~yg-~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
||+++||+++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++......... +.+|
T Consensus 1 ml~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~-~~~i 79 (274)
T PRK13644 1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGI-RKLV 79 (274)
T ss_pred CEEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHH-Hhhe
Confidence 589999999995 56799999999999999999999999999999999999999999999999987543221222 2369
Q ss_pred EEEecCCC-CCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 016804 170 GLVFQSAA-LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (382)
Q Consensus 170 g~V~Q~~~-l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~ 248 (382)
||+||++. .+...|++||+.+..... +.+..+..+++.++++.+||.+..++++.+||||||||++|||||+.
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~----- 153 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENL-CLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTM----- 153 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHc-CCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHc-----
Confidence 99999985 355589999998865322 34555666778899999999999999999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehh
Q 016804 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIIL 328 (382)
Q Consensus 249 a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~ 328 (382)
+|+||||||||+|||+.++..+.++|++++++| .|+|++|||++++. .|||+
T Consensus 154 --~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g----------~til~~tH~~~~~~-~~d~v--------------- 205 (274)
T PRK13644 154 --EPECLIFDEVTSMLDPDSGIAVLERIKKLHEKG----------KTIVYITHNLEELH-DADRI--------------- 205 (274)
T ss_pred --CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCC----------CEEEEEecCHHHHh-hCCEE---------------
Confidence 699999999999999999999999999998766 59999999999985 58877
Q ss_pred ccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 329 GAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 329 ~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.|+++++.
T Consensus 206 ---------------~~l~~G~i~~~g~~~~~~ 223 (274)
T PRK13644 206 ---------------IVMDRGKIVLEGEPENVL 223 (274)
T ss_pred ---------------EEEECCEEEEECCHHHHh
Confidence 999999999999887764
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-51 Score=375.37 Aligned_cols=201 Identities=40% Similarity=0.672 Sum_probs=174.4
Q ss_pred EEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 93 DCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 93 ~~~nvs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
+++||+++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ... .+.+|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~-~~~~i~ 78 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLS-LKE-LRRKVG 78 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCC-HHH-HHhhce
Confidence 47899999987 78999999999999999999999999999999999999999999999999875431 111 223699
Q ss_pred EEecCCC-CCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 171 LVFQSAA-LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 171 ~V~Q~~~-l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
|+||++. .++.+|+.||+.+.... .+....+..+++.++++.+++.+..++++.+|||||||||+|||||+.
T Consensus 79 ~~~q~~~~~~~~~t~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~------ 151 (211)
T cd03225 79 LVFQNPDDQFFGPTVEEEVAFGLEN-LGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAM------ 151 (211)
T ss_pred EEecChhhhcCCCcHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhc------
Confidence 9999985 35568999999875432 223344445678889999999988899999999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|++|||||||+|||+.++..+.+.|+++++++ .|+|++|||++++..+||++
T Consensus 152 -~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~----------~tvi~~sH~~~~~~~~~d~i 204 (211)
T cd03225 152 -DPDILLLDEPTAGLDPAGRRELLELLKKLKAEG----------KTIIIVTHDLDLLLELADRV 204 (211)
T ss_pred -CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHhCCEE
Confidence 699999999999999999999999999998765 59999999999999999988
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-51 Score=410.90 Aligned_cols=232 Identities=31% Similarity=0.497 Sum_probs=201.0
Q ss_pred EeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCE----ECCCCCChh--hhccce
Q 016804 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGR----KRAGLISDE--EISGLR 168 (382)
Q Consensus 95 ~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~----~i~~~~~~~--~~~~~~ 168 (382)
.++.++||...+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+ ++....... ..++.+
T Consensus 28 ~~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~ 107 (382)
T TIGR03415 28 EEILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHR 107 (382)
T ss_pred HHHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCC
Confidence 45677888888999999999999999999999999999999999999999999999997 333221111 112246
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~ 248 (382)
|+||||++.+|+++||+||+.+++.. .+.++.+..+++.++++.+||.++.++++.+|||||||||+|||||+.
T Consensus 108 i~~vfQ~~~l~p~~Tv~eNi~~~~~~-~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~----- 181 (382)
T TIGR03415 108 VSMVFQKFALMPWLTVEENVAFGLEM-QGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAM----- 181 (382)
T ss_pred EEEEECCCcCCCCCcHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc-----
Confidence 99999999999999999999987632 234555666788999999999999999999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheeh
Q 016804 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVII 327 (382)
Q Consensus 249 a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~ 327 (382)
+|+||||||||++||+.++.++++.|.+++++ + +|+|+||||++++.++|||+
T Consensus 182 --~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~----------~TII~iTHdl~e~~~l~DrI-------------- 235 (382)
T TIGR03415 182 --DADILLMDEPFSALDPLIRTQLQDELLELQAKLN----------KTIIFVSHDLDEALKIGNRI-------------- 235 (382)
T ss_pred --CCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEE--------------
Confidence 69999999999999999999999999999875 4 59999999999999999988
Q ss_pred hccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 328 LGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 328 ~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
++|++|++++.|+++++. .+.+.++..|..+
T Consensus 236 ----------------~vl~~G~iv~~g~~~ei~~~p~~~~~~~~~~~ 267 (382)
T TIGR03415 236 ----------------AIMEGGRIIQHGTPEEIVLNPANDYVADFVAH 267 (382)
T ss_pred ----------------EEEECCEEEEecCHHHHhhCcchHHHHHHhcc
Confidence 999999999999888875 4556788888764
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-50 Score=389.66 Aligned_cols=223 Identities=35% Similarity=0.613 Sum_probs=192.4
Q ss_pred eEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 91 LIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 91 ~I~~~nvs~~yg-~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
||+++||+++|+ .+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..........+.+|
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred CEEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 588999999996 4679999999999999999999999999999999999999999999999998742111111123369
Q ss_pred EEEecCCC--CCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 016804 170 GLVFQSAA--LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (382)
Q Consensus 170 g~V~Q~~~--l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~ 247 (382)
+|+||++. +++ .||.||+.++.... +...++..+++.++++.+||.++.++++.+||||||||++|||||+.
T Consensus 81 ~~v~q~~~~~~~~-~tv~e~i~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~---- 154 (275)
T PRK13639 81 GIVFQNPDDQLFA-PTVEEDVAFGPLNL-GLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAM---- 154 (275)
T ss_pred EEEeeChhhhhcc-ccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhc----
Confidence 99999973 554 69999998764322 23445556678899999999999999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheeh
Q 016804 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVII 327 (382)
Q Consensus 248 ~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~ 327 (382)
+|++|||||||+|||+.++..+.++|+++.+++ .|||++|||++++.++|||+
T Consensus 155 ---~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~----------~til~vtH~~~~~~~~~d~i-------------- 207 (275)
T PRK13639 155 ---KPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEG----------ITIIISTHDVDLVPVYADKV-------------- 207 (275)
T ss_pred ---CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCC----------CEEEEEecCHHHHHHhCCEE--------------
Confidence 699999999999999999999999999998765 59999999999999999988
Q ss_pred hccCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 328 LGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 328 ~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|++++.|+++++..
T Consensus 208 ----------------~~l~~G~i~~~g~~~~~~~ 226 (275)
T PRK13639 208 ----------------YVMSDGKIIKEGTPKEVFS 226 (275)
T ss_pred ----------------EEEECCEEEEeCCHHHHhc
Confidence 9999999999998887653
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-50 Score=379.56 Aligned_cols=217 Identities=31% Similarity=0.498 Sum_probs=188.4
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
|+++||++.|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... ....+.+++|
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~-~~~~~~~i~~ 79 (230)
T TIGR03410 1 LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPP-HERARAGIAY 79 (230)
T ss_pred CEEEeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCH-HHHHHhCeEE
Confidence 578999999998899999999999999999999999999999999999999999999999998754322 2212336999
Q ss_pred EecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcC-CcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVG-LKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~g-L~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
+||++.+|+.+|+.+|+.++..... .. ..+.+.++++.++ +.+..++++.+||||||||++|||||+.
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~-~~---~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~------- 148 (230)
T TIGR03410 80 VPQGREIFPRLTVEENLLTGLAALP-RR---SRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVT------- 148 (230)
T ss_pred eccCCcccCCCcHHHHHHHHHHhcC-cc---hHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhc-------
Confidence 9999999998999999987653221 11 1234567788886 5777899999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
+|++|||||||+|||+.++..+.++|.+++++ + .|+|++||+++++..+||++
T Consensus 149 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tii~~sH~~~~~~~~~d~v---------------- 202 (230)
T TIGR03410 149 RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGG----------MAILLVEQYLDFARELADRY---------------- 202 (230)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCC----------cEEEEEeCCHHHHHHhCCEE----------------
Confidence 69999999999999999999999999999875 4 59999999999999999988
Q ss_pred cCCCCcccccccEEEEEeCCeEEEEeccccc
Q 016804 330 AVAPDKEVFFIYRLIFLYEGKIVWQGMTHEF 360 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~ 360 (382)
++|++|++++.|+.+++
T Consensus 203 --------------~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 203 --------------YVMERGRVVASGAGDEL 219 (230)
T ss_pred --------------EEEECCEEEEECCHHHc
Confidence 99999999999977776
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-50 Score=380.83 Aligned_cols=233 Identities=28% Similarity=0.463 Sum_probs=197.7
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC---CCccEEEECCEECCCCCChhhhccc
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA---PDKGEVYIRGRKRAGLISDEEISGL 167 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~---p~sG~I~i~G~~i~~~~~~~~~~~~ 167 (382)
+++++||++.|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|+++..... .. .+.
T Consensus 2 ~~~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~-~~-~~~ 79 (246)
T PRK14269 2 IAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDV-VA-LRK 79 (246)
T ss_pred ceeeeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCH-HH-Hhh
Confidence 5899999999998899999999999999999999999999999999999984 799999999998754321 11 233
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhHhhcCCC-CHHHHHHHHHHHHHHcCCc----ccccCCCCCCChHHHHHHHHHHHHh
Q 016804 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKM-RDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALARSII 242 (382)
Q Consensus 168 ~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~-~~~~~~~~v~~~L~~~gL~----~~~~~~~~~LSGGqrQRVaIArAL~ 242 (382)
+|+|+||++.+|+ .|++||+.++....... ......+++.++++.+++. +..++.+.+|||||||||+|||||+
T Consensus 80 ~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 158 (246)
T PRK14269 80 NVGMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALA 158 (246)
T ss_pred hEEEEecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 6999999999997 69999998764322111 2234455678899999995 4568889999999999999999999
Q ss_pred cCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccc
Q 016804 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHI 322 (382)
Q Consensus 243 ~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~ 322 (382)
. +|++|||||||+|||+.++..+.+.|+++.+ + .|+|++||+++++.++|||+
T Consensus 159 ~-------~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~----------~tiii~tH~~~~~~~~~d~i--------- 211 (246)
T PRK14269 159 I-------KPKLLLLDEPTSALDPISSGVIEELLKELSH-N----------LSMIMVTHNMQQGKRVADYT--------- 211 (246)
T ss_pred c-------CCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-C----------CEEEEEecCHHHHHhhCcEE---------
Confidence 7 6999999999999999999999999999864 4 49999999999999999988
Q ss_pred hheehhccCCCCcccccccEEEEEeCCeEEEEeccccccc-CCCHHHHHHHcC
Q 016804 323 DVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFASG 374 (382)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~~ 374 (382)
++|++|++++.|++.++.. +.++.+.+|+.+
T Consensus 212 ---------------------~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 243 (246)
T PRK14269 212 ---------------------AFFHLGELIEFGESKEFFENPKQEKTKAYLSG 243 (246)
T ss_pred ---------------------EEEECCEEEEECCHHHHHhCCCcHHHHHHhhh
Confidence 9999999999998888753 445677777664
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-51 Score=437.31 Aligned_cols=281 Identities=30% Similarity=0.487 Sum_probs=234.3
Q ss_pred ccccchhhHhHhhHHhhhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCC-CCCCCCCCCcccccccccC
Q 016804 4 LSSSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDG-FPATKFNDSSKSENVNTLF 82 (382)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 82 (382)
++....+.|-..+..+.+|+..+.+.+ .-+...+...+|+..+...|+.+.+... .+-
T Consensus 407 lTlG~LiAf~~l~~~f~~pi~~L~~~~-----~~~q~~~~~~~rL~dil~~~~E~~~~~~~~~~---------------- 465 (709)
T COG2274 407 LTLGQLVAFNMLAGYFISPITRLSQLW-----TDFQQAKVALERLGDILDTPPEQEGDKTLIHL---------------- 465 (709)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHH-----HHHHHHHHHHHHHHHHhcCCcccccccccccc----------------
Confidence 445666777777888899999998888 7888999999999999999976554442 110
Q ss_pred CCCCCCcceEEEEeEEEEeCCe--eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCC
Q 016804 83 EPEDDGDVLIDCRNVYKSFGEK--HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS 160 (382)
Q Consensus 83 ~~~~~~~~~I~~~nvs~~yg~~--~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~ 160 (382)
+.-.++ |+++||+|+|+.. .+|+|+||+|++||.+||+|+||||||||+|+|+|+++|++|+|++||.|+.....
T Consensus 466 -~~~~g~--I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~ 542 (709)
T COG2274 466 -PKLQGE--IEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDL 542 (709)
T ss_pred -cccCce--EEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCH
Confidence 222333 9999999999754 69999999999999999999999999999999999999999999999999876533
Q ss_pred hhhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCCh
Q 016804 161 DEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSG 229 (382)
Q Consensus 161 ~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSG 229 (382)
.. . |++||||+|++.||.. |++||+.++.. ..+ .+++.++++..|++++..+.| ..|||
T Consensus 543 ~~-l-R~~ig~V~Q~~~Lf~g-SI~eNi~l~~p---~~~----~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSG 612 (709)
T COG2274 543 AS-L-RRQVGYVLQDPFLFSG-SIRENIALGNP---EAT----DEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSG 612 (709)
T ss_pred HH-H-HhheeEEcccchhhcC-cHHHHHhcCCC---CCC----HHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCH
Confidence 22 2 3479999999999975 99999998531 122 345677888889888877665 68999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHh
Q 016804 230 GMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA 309 (382)
Q Consensus 230 GqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~ 309 (382)
|||||++|||||++ +|+|||||||||+||+.+++.+.+.|.++.+. +|+|+|||+++.+..
T Consensus 613 GQrQrlalARaLl~-------~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~-----------~T~I~IaHRl~ti~~- 673 (709)
T COG2274 613 GQRQRLALARALLS-------KPKILLLDEATSALDPETEAIILQNLLQILQG-----------RTVIIIAHRLSTIRS- 673 (709)
T ss_pred HHHHHHHHHHHhcc-------CCCEEEEeCcccccCHhHHHHHHHHHHHHhcC-----------CeEEEEEccchHhhh-
Confidence 99999999999997 59999999999999999999999999999754 499999999999975
Q ss_pred hchhccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHH
Q 016804 310 VDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPI 367 (382)
Q Consensus 310 aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~ 367 (382)
|||| +||++|||+++|+.+|+......+
T Consensus 674 adrI------------------------------iVl~~Gkiv~~gs~~ell~~~g~y 701 (709)
T COG2274 674 ADRI------------------------------IVLDQGKIVEQGSHEELLAQGGLY 701 (709)
T ss_pred ccEE------------------------------EEccCCceeccCCHHHHHHhcChH
Confidence 6655 999999999999877777654333
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-50 Score=388.43 Aligned_cols=220 Identities=35% Similarity=0.594 Sum_probs=193.0
Q ss_pred eEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 91 LIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 91 ~I~~~nvs~~yg-~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
+|+++||+++|+ .+.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++... ..... +.++
T Consensus 3 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~-~~~i 80 (277)
T PRK13652 3 LIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKE-NIREV-RKFV 80 (277)
T ss_pred eEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcC-CHHHH-Hhhe
Confidence 689999999995 46799999999999999999999999999999999999999999999999987542 12222 2369
Q ss_pred EEEecCCC--CCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 016804 170 GLVFQSAA--LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (382)
Q Consensus 170 g~V~Q~~~--l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~ 247 (382)
+|+||++. ++ ..||.||+.++... .+...+...+++.++++.+||.+..++.+.+||||||||++|||||+.
T Consensus 81 ~~v~q~~~~~~~-~~tv~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~---- 154 (277)
T PRK13652 81 GLVFQNPDDQIF-SPTVEQDIAFGPIN-LGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAM---- 154 (277)
T ss_pred EEEecCcccccc-cccHHHHHHhHHHH-cCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHc----
Confidence 99999974 45 57999999876532 234555666778899999999999999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchhee
Q 016804 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVI 326 (382)
Q Consensus 248 ~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~ 326 (382)
+|++|||||||+|||+.++..+.++|++++++ + .|+|++||+++++.++|||+
T Consensus 155 ---~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g----------~tvli~tH~~~~~~~~~drv------------- 208 (277)
T PRK13652 155 ---EPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYG----------MTVIFSTHQLDLVPEMADYI------------- 208 (277)
T ss_pred ---CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEecCHHHHHHhCCEE-------------
Confidence 69999999999999999999999999999875 5 59999999999999999988
Q ss_pred hhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 327 ILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 327 ~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.|+++++.
T Consensus 209 -----------------~~l~~G~i~~~g~~~~~~ 226 (277)
T PRK13652 209 -----------------YVMDKGRIVAYGTVEEIF 226 (277)
T ss_pred -----------------EEEECCeEEEECCHHHHh
Confidence 999999999999887764
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-50 Score=384.95 Aligned_cols=235 Identities=31% Similarity=0.503 Sum_probs=198.0
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC---ccEEEECCEECCCCC---Chhh
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD---KGEVYIRGRKRAGLI---SDEE 163 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~---sG~I~i~G~~i~~~~---~~~~ 163 (382)
++|+++||+++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|+ +|+|+++|+++.... ....
T Consensus 3 ~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (262)
T PRK09984 3 TIIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIR 82 (262)
T ss_pred cEEEEeeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHH
Confidence 4799999999999899999999999999999999999999999999999999987 499999999864321 0111
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhHhhcC-------CCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHH
Q 016804 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENS-------KMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVA 236 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~-------~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVa 236 (382)
..+.+++|+||++.+|+.+|++||+.++..... ....++..+++.++++.+|+.+..++.+.+|||||||||+
T Consensus 83 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ 162 (262)
T PRK09984 83 KSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVA 162 (262)
T ss_pred HHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHH
Confidence 113369999999999998999999987542100 1112334567889999999998899999999999999999
Q ss_pred HHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhcc
Q 016804 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCL 315 (382)
Q Consensus 237 IArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~ 315 (382)
|||||+. +|++|||||||+|||+.++..+.++|+++.++ | .|+|++|||++++.++|||+
T Consensus 163 laral~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g----------~tvii~tH~~~~~~~~~d~i-- 223 (262)
T PRK09984 163 IARALMQ-------QAKVILADEPIASLDPESARIVMDTLRDINQNDG----------ITVVVTLHQVDYALRYCERI-- 223 (262)
T ss_pred HHHHHhc-------CCCEEEecCccccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEE--
Confidence 9999997 69999999999999999999999999999764 5 59999999999999999988
Q ss_pred ccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHHcC
Q 016804 316 FQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFASG 374 (382)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 374 (382)
++|++|++++.|++.++. .+.+.+++.+
T Consensus 224 ----------------------------~~l~~g~i~~~g~~~~~~---~~~~~~~~~~ 251 (262)
T PRK09984 224 ----------------------------VALRQGHVFYDGSSQQFD---NERFDHLYRS 251 (262)
T ss_pred ----------------------------EEEECCEEEEeCCHHHhc---cHHHHHHHhh
Confidence 999999999999887762 2445555543
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-50 Score=379.88 Aligned_cols=235 Identities=29% Similarity=0.493 Sum_probs=197.5
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEECCCCCChhhhc
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLISDEEIS 165 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p-----~sG~I~i~G~~i~~~~~~~~~~ 165 (382)
.|+++||++.|+++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++..........
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (250)
T PRK14240 3 KISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQL 82 (250)
T ss_pred eEEEEEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHH
Confidence 48999999999888899999999999999999999999999999999999863 7999999999875311111112
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc----ccccCCCCCCChHHHHHHHHHHHH
Q 016804 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALARSI 241 (382)
Q Consensus 166 ~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~----~~~~~~~~~LSGGqrQRVaIArAL 241 (382)
+.+|+|+||++.+|+ +|+++|+.+..........++.++++.++++.+++. +..++++.+||||||||++|||||
T Consensus 83 ~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral 161 (250)
T PRK14240 83 RKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARAL 161 (250)
T ss_pred hccEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 336999999999998 899999988653221122344566788889999874 456888999999999999999999
Q ss_pred hcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccccc
Q 016804 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGH 321 (382)
Q Consensus 242 ~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~ 321 (382)
+. +|++|||||||++||+.++..+.++|+++.+ + .|+|++|||++.+.++|||+
T Consensus 162 ~~-------~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~----------~tiii~sH~~~~~~~~~d~v-------- 215 (250)
T PRK14240 162 AV-------EPEVLLMDEPTSALDPISTLKIEELIQELKK-D----------YTIVIVTHNMQQASRISDKT-------- 215 (250)
T ss_pred hc-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-C----------CeEEEEEeCHHHHHhhCCEE--------
Confidence 97 6999999999999999999999999999954 4 49999999999999999988
Q ss_pred chheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 322 IDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
++|++|++++.|++.++. .+.++.+.+++.+
T Consensus 216 ----------------------~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~ 247 (250)
T PRK14240 216 ----------------------AFFLNGEIVEFGDTVDLFTNPKDKRTEDYITG 247 (250)
T ss_pred ----------------------EEEECCEEEEeCCHHHHHhCCCChHHHHhhcc
Confidence 999999999999888765 4466777777665
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-50 Score=380.01 Aligned_cols=236 Identities=30% Similarity=0.500 Sum_probs=197.4
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEECCCCCChhhh
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-----PDKGEVYIRGRKRAGLISDEEI 164 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~-----p~sG~I~i~G~~i~~~~~~~~~ 164 (382)
++|+++||+++|+++++|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.........
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~ 82 (251)
T PRK14251 3 NIISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVE 82 (251)
T ss_pred ceEEEEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHH
Confidence 46999999999998899999999999999999999999999999999999997 4899999999986431111111
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc----ccccCCCCCCChHHHHHHHHHHH
Q 016804 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALARS 240 (382)
Q Consensus 165 ~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~----~~~~~~~~~LSGGqrQRVaIArA 240 (382)
.+..++|++|++.+|+ .|++||+.++.........+...+++.++++.+++. ...++.+.+||||||||++||||
T Consensus 83 ~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~lara 161 (251)
T PRK14251 83 LRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARA 161 (251)
T ss_pred hhccEEEEecCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHH
Confidence 2336999999999987 799999987643221122333456678899999984 45688999999999999999999
Q ss_pred HhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccc
Q 016804 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFG 320 (382)
Q Consensus 241 L~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~ 320 (382)
|+. +|++|||||||++||+.++..+.+.|+++.+ + .|+|++||+++++.++|||+
T Consensus 162 l~~-------~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~----------~tiiiisH~~~~~~~~~d~i------- 216 (251)
T PRK14251 162 LAV-------RPKVVLLDEPTSALDPISSSEIEETLMELKH-Q----------YTFIMVTHNLQQAGRISDQT------- 216 (251)
T ss_pred Hhc-------CCCEEEecCCCccCCHHHHHHHHHHHHHHHc-C----------CeEEEEECCHHHHHhhcCEE-------
Confidence 997 6999999999999999999999999999964 3 49999999999999999988
Q ss_pred cchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 321 HIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
++|++|++++.|++.++. .+.++.+..|+..
T Consensus 217 -----------------------~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~ 248 (251)
T PRK14251 217 -----------------------AFLMNGDLIEAGPTEEMFIAPKKQITSDYLNG 248 (251)
T ss_pred -----------------------EEEECCEEEEeCCHHHHHhCCCCHHHHHHHhh
Confidence 999999999999887765 4556677776653
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-50 Score=379.27 Aligned_cols=238 Identities=29% Similarity=0.495 Sum_probs=198.5
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC-----ccEEEECCEECCCCCChhhh
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD-----KGEVYIRGRKRAGLISDEEI 164 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~-----sG~I~i~G~~i~~~~~~~~~ 164 (382)
.+|+++||+++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++|+ +|+|+++|+++.........
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 82 (252)
T PRK14272 3 LLLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVA 82 (252)
T ss_pred EEEEEeeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHH
Confidence 3699999999999889999999999999999999999999999999999999874 89999999987532111111
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc----ccccCCCCCCChHHHHHHHHHHH
Q 016804 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALARS 240 (382)
Q Consensus 165 ~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~----~~~~~~~~~LSGGqrQRVaIArA 240 (382)
.+.+|+|+||++.+|+.+|+.||+.+.........+++..+.+.++++.+++. +..++++.+||||||||++||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara 162 (252)
T PRK14272 83 MRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARA 162 (252)
T ss_pred hhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHH
Confidence 23369999999999998999999987643221112334455667777777763 45688899999999999999999
Q ss_pred HhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccc
Q 016804 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFG 320 (382)
Q Consensus 241 L~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~ 320 (382)
|+. +|++|||||||++||+.++..+.+.|+++++ + .|+|++||+++++..+|||+
T Consensus 163 l~~-------~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~----------~tiii~sH~~~~~~~~~d~i------- 217 (252)
T PRK14272 163 LAV-------EPEILLMDEPTSALDPASTARIEDLMTDLKK-V----------TTIIIVTHNMHQAARVSDTT------- 217 (252)
T ss_pred Hhc-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-C----------CeEEEEeCCHHHHHHhCCEE-------
Confidence 997 6999999999999999999999999999964 4 49999999999999999988
Q ss_pred cchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcCC
Q 016804 321 HIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASGS 375 (382)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~~ 375 (382)
++|++|++++.|+++++. .+.++....++.|.
T Consensus 218 -----------------------~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (252)
T PRK14272 218 -----------------------SFFLVGDLVEHGPTDQLFTNPRDERTEAYVSGR 250 (252)
T ss_pred -----------------------EEEECCEEEEeCCHHHHHhCcCcHHHHHHHhcc
Confidence 999999999999888875 34567777777653
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-50 Score=372.59 Aligned_cols=210 Identities=39% Similarity=0.625 Sum_probs=182.8
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
|+++|++++|+++. .|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... . .+.+++|
T Consensus 1 i~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~-~---~~~~i~~ 74 (211)
T cd03298 1 VRLDKIRFSYGEQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAP-P---ADRPVSM 74 (211)
T ss_pred CEEEeEEEEeCCEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCC-H---hHccEEE
Confidence 47899999998764 3999999999999999999999999999999999999999999999875431 1 1236999
Q ss_pred EecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCC
Q 016804 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~ 251 (382)
+||++.+|+.+|++||+.+........ .++.++++.++++.+|+.+..++++.+||||||||++|||||+. +
T Consensus 75 ~~q~~~~~~~~tv~enl~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~-------~ 146 (211)
T cd03298 75 LFQENNLFAHLTVEQNVGLGLSPGLKL-TAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVR-------D 146 (211)
T ss_pred EecccccCCCCcHHHHHhcccccccCc-cHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhc-------C
Confidence 999999999899999998754211111 22345568899999999988999999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhcc
Q 016804 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGA 330 (382)
Q Consensus 252 P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~ 330 (382)
|++|||||||++||+.++..+.++|++++++ + .|+|++|||++++..+|||+
T Consensus 147 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~----------~tii~~sH~~~~~~~~~d~i----------------- 199 (211)
T cd03298 147 KPVLLLDEPFAALDPALRAEMLDLVLDLHAETK----------MTVLMVTHQPEDAKRLAQRV----------------- 199 (211)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEecCHHHHHhhhCEE-----------------
Confidence 9999999999999999999999999999764 4 59999999999999999988
Q ss_pred CCCCcccccccEEEEEeCCeEEEEe
Q 016804 331 VAPDKEVFFIYRLIFLYEGKIVWQG 355 (382)
Q Consensus 331 ~~~~~~~~~~~~ii~l~~G~i~~~g 355 (382)
++|++|++++.|
T Consensus 200 -------------~~l~~G~i~~~~ 211 (211)
T cd03298 200 -------------VFLDNGRIAAQG 211 (211)
T ss_pred -------------EEEECCEEeecC
Confidence 999999998654
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-50 Score=402.75 Aligned_cols=225 Identities=29% Similarity=0.447 Sum_probs=192.8
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCCh--hhhccce
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD--EEISGLR 168 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~--~~~~~~~ 168 (382)
||++ ||+|+|+++.+ |+||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++...... ....+++
T Consensus 1 ~l~~-~l~k~~~~~~~--~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 77 (352)
T PRK11144 1 MLEL-NFKQQLGDLCL--TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRR 77 (352)
T ss_pred CeEE-EEEEEeCCEEE--EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCC
Confidence 5788 99999987643 89999999999999999999999999999999999999999999986432110 0111336
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~ 248 (382)
|+|+||++.+|+++||+||+.++.. ....+++.++++.+||.++.++++.+|||||||||+|||||+.
T Consensus 78 i~~v~q~~~l~~~~tv~enl~~~~~-------~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~----- 145 (352)
T PRK11144 78 IGYVFQDARLFPHYKVRGNLRYGMA-------KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLT----- 145 (352)
T ss_pred EEEEcCCcccCCCCcHHHHHHhhhh-------hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHc-----
Confidence 9999999999999999999988642 1124567889999999999999999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheeh
Q 016804 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVII 327 (382)
Q Consensus 249 a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~ 327 (382)
+|++|||||||++||+.++..+.+.|+++.++ + .|+|+||||++++..+|||+
T Consensus 146 --~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g----------~tii~vTHd~~~~~~~~d~i-------------- 199 (352)
T PRK11144 146 --APELLLMDEPLASLDLPRKRELLPYLERLAREIN----------IPILYVSHSLDEILRLADRV-------------- 199 (352)
T ss_pred --CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC----------CeEEEEecCHHHHHHhCCEE--------------
Confidence 69999999999999999999999999999876 4 59999999999999999988
Q ss_pred hccCCCCcccccccEEEEEeCCeEEEEeccccccc-CCCHHHHHHH
Q 016804 328 LGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFA 372 (382)
Q Consensus 328 ~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~-~~~~~~~~~~ 372 (382)
++|++|++++.|+++++.. +.+..+..|.
T Consensus 200 ----------------~~l~~G~i~~~g~~~~i~~~p~~~~~~~~~ 229 (352)
T PRK11144 200 ----------------VVLEQGKVKAFGPLEEVWASSAMRPWLPKE 229 (352)
T ss_pred ----------------EEEeCCEEEEecCHHHHHhCcchhhhhccc
Confidence 9999999999998888753 3334444443
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-50 Score=389.52 Aligned_cols=221 Identities=31% Similarity=0.535 Sum_probs=193.2
Q ss_pred ceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccc
Q 016804 90 VLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (382)
Q Consensus 90 ~~I~~~nvs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~ 167 (382)
++|+++||+++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... ..... +.
T Consensus 4 ~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~-~~~~~-~~ 81 (279)
T PRK13635 4 EIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEE-TVWDV-RR 81 (279)
T ss_pred ceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcC-cHHHH-hh
Confidence 57999999999974 5699999999999999999999999999999999999999999999999987543 22222 33
Q ss_pred eEEEEecCCC-CCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCC
Q 016804 168 RIGLVFQSAA-LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT 246 (382)
Q Consensus 168 ~Ig~V~Q~~~-l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~ 246 (382)
+|||+||++. +++..||.||+.++.... +...++..+++.++++.+||+++.++++.+|||||||||+|||||+.
T Consensus 82 ~i~~~~q~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~--- 157 (279)
T PRK13635 82 QVGMVFQNPDNQFVGATVQDDVAFGLENI-GVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLAL--- 157 (279)
T ss_pred heEEEEeCHHHhcccccHHHHHhhhHhhC-CCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHc---
Confidence 6999999984 666689999998865322 34455566778999999999999999999999999999999999997
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchhe
Q 016804 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVV 325 (382)
Q Consensus 247 ~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~ 325 (382)
+|+||||||||+|||+.++..+.++|++++++ + .|||++|||++++.. |||+
T Consensus 158 ----~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~----------~tilivsH~~~~~~~-~d~i------------ 210 (279)
T PRK13635 158 ----QPDIIILDEATSMLDPRGRREVLETVRQLKEQKG----------ITVLSITHDLDEAAQ-ADRV------------ 210 (279)
T ss_pred ----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCC----------CEEEEEecCHHHHHc-CCEE------------
Confidence 69999999999999999999999999999876 4 599999999999874 8877
Q ss_pred ehhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 326 IILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 326 ~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.|+++++.
T Consensus 211 ------------------~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13635 211 ------------------IVMNKGEILEEGTPEEIF 228 (279)
T ss_pred ------------------EEEECCEEEEECCHHHHh
Confidence 999999999999877654
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-50 Score=386.03 Aligned_cols=225 Identities=29% Similarity=0.442 Sum_probs=194.9
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
..+|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... .... +.+
T Consensus 5 ~~~l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~-~~~~-~~~ 82 (265)
T PRK10253 5 VARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYA-SKEV-ARR 82 (265)
T ss_pred ccEEEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCC-HHHH-hhh
Confidence 45799999999999889999999999999999999999999999999999999999999999999875422 2222 236
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCC---CCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCC
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSK---MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~---~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~ 245 (382)
|+|+||++.+|+.+|++||+.++...... ...+...+.+.++++.+||.+..++++.+||||||||++|||||+.
T Consensus 83 i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~-- 160 (265)
T PRK10253 83 IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQ-- 160 (265)
T ss_pred eEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhc--
Confidence 99999999999889999999875311110 1122334567889999999988999999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchh
Q 016804 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDV 324 (382)
Q Consensus 246 ~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~ 324 (382)
+|++|||||||+|||+.++..+.++|+++.++ + .|+|++|||++++.++|||+
T Consensus 161 -----~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~----------~tiii~tH~~~~~~~~~d~i----------- 214 (265)
T PRK10253 161 -----ETAIMLLDEPTTWLDISHQIDLLELLSELNREKG----------YTLAAVLHDLNQACRYASHL----------- 214 (265)
T ss_pred -----CCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEE-----------
Confidence 69999999999999999999999999999764 4 59999999999999999988
Q ss_pred eehhccCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 325 VIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|++++.|++.++..
T Consensus 215 -------------------~~l~~G~i~~~g~~~~~~~ 233 (265)
T PRK10253 215 -------------------IALREGKIVAQGAPKEIVT 233 (265)
T ss_pred -------------------EEEECCEEEEeCCHHHHhh
Confidence 9999999999998777653
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-50 Score=383.88 Aligned_cols=237 Identities=29% Similarity=0.456 Sum_probs=203.5
Q ss_pred eEEEEeEEEEeC---------CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCCh
Q 016804 91 LIDCRNVYKSFG---------EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD 161 (382)
Q Consensus 91 ~I~~~nvs~~yg---------~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~ 161 (382)
+|+++||+|+|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++......
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 699999999997 47899999999999999999999999999999999999999999999999987543221
Q ss_pred h-hhccceEEEEecCC--CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHH
Q 016804 162 E-EISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVAL 237 (382)
Q Consensus 162 ~-~~~~~~Ig~V~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaI 237 (382)
. ...+.+++|+||++ .+++..|+.+|+.+...........+..+.+.++++.+|+. ...++.+.+||||||||++|
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~l 162 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCL 162 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHH
Confidence 1 11133699999998 46677899999976543222233444456788999999997 57899999999999999999
Q ss_pred HHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccc
Q 016804 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLF 316 (382)
Q Consensus 238 ArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~ 316 (382)
||||+. +|++|||||||+|||+.++..+.+.|++++++ + .|+|++||+++++.++||++
T Consensus 163 aral~~-------~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~----------~tiiivsH~~~~i~~~~d~i--- 222 (268)
T PRK10419 163 ARALAV-------EPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFG----------TACLFITHDLRLVERFCQRV--- 222 (268)
T ss_pred HHHHhc-------CCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcC----------cEEEEEECCHHHHHHhCCEE---
Confidence 999997 69999999999999999999999999999775 4 59999999999999999988
Q ss_pred cccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHHcC
Q 016804 317 QIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFASG 374 (382)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 374 (382)
++|++|++++.|+++++....+++++.+...
T Consensus 223 ---------------------------~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 253 (268)
T PRK10419 223 ---------------------------MVMDNGQIVETQPVGDKLTFSSPAGRVLQNA 253 (268)
T ss_pred ---------------------------EEEECCEEeeeCChhhccCCCCHHHHHHHHh
Confidence 9999999999999888877778888887754
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-50 Score=380.46 Aligned_cols=238 Identities=32% Similarity=0.495 Sum_probs=197.7
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEE-----CCCCCChhh-
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK-----RAGLISDEE- 163 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~-----i~~~~~~~~- 163 (382)
++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|++ +........
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (253)
T TIGR02323 2 PLLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERR 81 (253)
T ss_pred ceEEEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHH
Confidence 47999999999988889999999999999999999999999999999999999999999999976 433211111
Q ss_pred -hccceEEEEecCCC--CCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHHHH
Q 016804 164 -ISGLRIGLVFQSAA--LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALAR 239 (382)
Q Consensus 164 -~~~~~Ig~V~Q~~~--l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaIAr 239 (382)
..+..|+|+||++. +++..|+.+|+.+..............+.+.++++.+++. ...++.+.+|||||||||+|||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~lar 161 (253)
T TIGR02323 82 RLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIAR 161 (253)
T ss_pred HhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHH
Confidence 11235999999975 4556799999976432111111223456778999999997 5889999999999999999999
Q ss_pred HHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccc
Q 016804 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQI 318 (382)
Q Consensus 240 AL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~ 318 (382)
||+. +|++|||||||++||+.++..+.++|+++.++ + .|+|+|||+++++..+|||+
T Consensus 162 al~~-------~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~----------~tii~vsH~~~~~~~~~d~~----- 219 (253)
T TIGR02323 162 NLVT-------RPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLG----------LAVIIVTHDLGVARLLAQRL----- 219 (253)
T ss_pred HHhc-------CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhcCEE-----
Confidence 9997 69999999999999999999999999998765 4 59999999999999999988
Q ss_pred cccchheehhccCCCCcccccccEEEEEeCCeEEEEeccccccc-CCCHHHHHHHcC
Q 016804 319 FGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFASG 374 (382)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~~ 374 (382)
++|++|++++.|+++++.. +.+++++.|+..
T Consensus 220 -------------------------~~l~~G~i~~~~~~~~~~~~~~~~~~~~~l~~ 251 (253)
T TIGR02323 220 -------------------------LVMQQGRVVESGLTDQVLDDPQHPYTQLLVSS 251 (253)
T ss_pred -------------------------EEEECCEEEEECCHHHHhcCCCCHHHHHHHHh
Confidence 9999999999998877653 456777777653
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-50 Score=378.42 Aligned_cols=234 Identities=30% Similarity=0.537 Sum_probs=196.4
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEECCCCCChhhhc
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLISDEEIS 165 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p-----~sG~I~i~G~~i~~~~~~~~~~ 165 (382)
+|+++||+++|+++++|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|.++..........
T Consensus 3 ~l~~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~ 82 (250)
T PRK14262 3 IIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEY 82 (250)
T ss_pred eEEEEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHh
Confidence 69999999999988899999999999999999999999999999999999984 8999999999864311111112
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc----cccCCCCCCChHHHHHHHHHHHH
Q 016804 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG----VEDRLPSELSGGMKKRVALARSI 241 (382)
Q Consensus 166 ~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~----~~~~~~~~LSGGqrQRVaIArAL 241 (382)
+.+++|+||++.+|+ .|++||+.+..........+..++.+.++++.+++.. ..++.+.+||||||||++|||||
T Consensus 83 ~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al 161 (250)
T PRK14262 83 RKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARAL 161 (250)
T ss_pred hhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHH
Confidence 336999999999998 8999999886532221223345566788899999853 47889999999999999999999
Q ss_pred hcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccccc
Q 016804 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGH 321 (382)
Q Consensus 242 ~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~ 321 (382)
+. +|++|||||||+|||+.++..+.+.|+++.+ + .|+|++||+++++..+|||+
T Consensus 162 ~~-------~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~----------~tili~sH~~~~~~~~~d~i-------- 215 (250)
T PRK14262 162 AV-------EPEVILLDEPTSALDPIATQRIEKLLEELSE-N----------YTIVIVTHNIGQAIRIADYI-------- 215 (250)
T ss_pred hC-------CCCEEEEeCCccccCHHHHHHHHHHHHHHhc-C----------cEEEEEeCCHHHHHHhCCEE--------
Confidence 97 6999999999999999999999999999965 4 49999999999999999988
Q ss_pred chheehhccCCCCcccccccEEEEEeCCeEEEEeccccccc-CCCHHHHHHHc
Q 016804 322 IDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFAS 373 (382)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~ 373 (382)
++|++|++++.|+++++.. +.++....|..
T Consensus 216 ----------------------~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 246 (250)
T PRK14262 216 ----------------------AFMYRGELIEYGPTREIVERPKNKLTEEYLT 246 (250)
T ss_pred ----------------------EEEECCEEEEecCHHHHHhCCCChHHHHHhc
Confidence 9999999999998887653 34556666654
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-49 Score=382.85 Aligned_cols=238 Identities=26% Similarity=0.456 Sum_probs=199.3
Q ss_pred CcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEECCCCCChh
Q 016804 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-----PDKGEVYIRGRKRAGLISDE 162 (382)
Q Consensus 88 ~~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~-----p~sG~I~i~G~~i~~~~~~~ 162 (382)
..++|+++||+++|+++++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|+++.......
T Consensus 17 ~~~~l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 96 (267)
T PRK14237 17 EEIALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINV 96 (267)
T ss_pred CCeEEEEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCCh
Confidence 3467999999999998899999999999999999999999999999999999996 58999999999874211111
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc----ccccCCCCCCChHHHHHHHHH
Q 016804 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALA 238 (382)
Q Consensus 163 ~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~----~~~~~~~~~LSGGqrQRVaIA 238 (382)
...+..|+|+||++.+|+ .||+||+.++..........+..+++.++++.+++. +..++++.+||||||||++||
T Consensus 97 ~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~la 175 (267)
T PRK14237 97 YEMRKHIGMVFQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIA 175 (267)
T ss_pred HHHhcceEEEecCCcccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHH
Confidence 112336999999999987 699999988653221123344566788899999985 457889999999999999999
Q ss_pred HHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccc
Q 016804 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQI 318 (382)
Q Consensus 239 rAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~ 318 (382)
|||+. +|++|||||||+|||+.++..+.++|+++.+ + .|+|++||+++++..+|||+
T Consensus 176 ral~~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~----------~tiii~tH~~~~~~~~~d~i----- 232 (267)
T PRK14237 176 RAIAV-------KPDILLMDEPASALDPISTMQLEETMFELKK-N----------YTIIIVTHNMQQAARASDYT----- 232 (267)
T ss_pred HHHhc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-C----------CEEEEEecCHHHHHHhcCEE-----
Confidence 99997 6999999999999999999999999999964 4 49999999999999999988
Q ss_pred cccchheehhccCCCCcccccccEEEEEeCCeEEEEeccccccc-CCCHHHHHHHcC
Q 016804 319 FGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFASG 374 (382)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~~ 374 (382)
++|++|++++.|+++++.. +....+.+++.+
T Consensus 233 -------------------------~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 264 (267)
T PRK14237 233 -------------------------AFFYLGDLIEYDKTRNIFTNPKLQSTNDYVSG 264 (267)
T ss_pred -------------------------EEEECCEEEEeCCHHHHhcCCCcHHHHHhhhh
Confidence 9999999999998888753 345556666544
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-50 Score=379.04 Aligned_cols=236 Identities=28% Similarity=0.430 Sum_probs=198.5
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC-----ccEEEECCEECCCCCChhhh
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD-----KGEVYIRGRKRAGLISDEEI 164 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~-----sG~I~i~G~~i~~~~~~~~~ 164 (382)
++|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|+ +|+|+++|.++.........
T Consensus 3 ~~l~~~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 82 (251)
T PRK14249 3 PKIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVN 82 (251)
T ss_pred ceEEEEEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHH
Confidence 4699999999999888999999999999999999999999999999999999997 69999999986432111111
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc----ccccCCCCCCChHHHHHHHHHHH
Q 016804 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALARS 240 (382)
Q Consensus 165 ~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~----~~~~~~~~~LSGGqrQRVaIArA 240 (382)
.+..++|+||++.+|+. |++||+.+..........++..+.+.++++.+++. +..++.+.+|||||||||+||||
T Consensus 83 ~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~lara 161 (251)
T PRK14249 83 LRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARV 161 (251)
T ss_pred hhceEEEEecCCccCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHH
Confidence 23469999999999984 99999988653221112233455677788888874 45788999999999999999999
Q ss_pred HhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccc
Q 016804 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFG 320 (382)
Q Consensus 241 L~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~ 320 (382)
|+. +|++|||||||+|||+.++..+.++|+++. ++ .|||++||+++++.++||++
T Consensus 162 l~~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~----------~tilivsh~~~~~~~~~d~i------- 216 (251)
T PRK14249 162 LAI-------EPEVILMDEPCSALDPVSTMRIEELMQELK-QN----------YTIAIVTHNMQQAARASDWT------- 216 (251)
T ss_pred Hhc-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cC----------CEEEEEeCCHHHHHhhCCEE-------
Confidence 997 699999999999999999999999999995 44 59999999999999999988
Q ss_pred cchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 321 HIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
++|++|++++.|++.++. .+.++.+.+|+.+
T Consensus 217 -----------------------~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~ 248 (251)
T PRK14249 217 -----------------------GFLLTGDLVEYGRTGEIFSRPRDKRTEDYITG 248 (251)
T ss_pred -----------------------EEEeCCeEEEeCCHHHHHhCCCChHHHHHHhc
Confidence 999999999999888865 4567778887765
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-50 Score=376.82 Aligned_cols=218 Identities=32% Similarity=0.557 Sum_probs=189.8
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
||+++||+++|++.. .++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... . .+.+++
T Consensus 1 ~l~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~---~~~~i~ 74 (232)
T PRK10771 1 MLKLTDITWLYHHLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTP-P---SRRPVS 74 (232)
T ss_pred CeEEEEEEEEECCcc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCC-h---hhccEE
Confidence 589999999998644 4999999999999999999999999999999999999999999999865321 1 123699
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
|+||++.+|+.+|+.||+.++....... .+...+++.++++.+|+.+..++++.+||||||||++|||||+.
T Consensus 75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~------- 146 (232)
T PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNPGLKL-NAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVR------- 146 (232)
T ss_pred EEecccccccCCcHHHHHhcccccccCC-CHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhc-------
Confidence 9999999999899999998754211111 22345668899999999999999999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
+|++|||||||+|||+.++..+.++|+++.++ + .|+|++|||++++..+|||+
T Consensus 147 ~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~----------~tiii~sH~~~~~~~~~d~i---------------- 200 (232)
T PRK10771 147 EQPILLLDEPFSALDPALRQEMLTLVSQVCQERQ----------LTLLMVSHSLEDAARIAPRS---------------- 200 (232)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEECCHHHHHHhCCEE----------------
Confidence 69999999999999999999999999999764 4 59999999999999999988
Q ss_pred cCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 330 AVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|++++.|+++++..
T Consensus 201 --------------~~l~~g~i~~~g~~~~~~~ 219 (232)
T PRK10771 201 --------------LVVADGRIAWDGPTDELLS 219 (232)
T ss_pred --------------EEEECCEEEEeCCHHHHHh
Confidence 9999999999998777764
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-50 Score=375.70 Aligned_cols=197 Identities=37% Similarity=0.601 Sum_probs=171.3
Q ss_pred EEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEE
Q 016804 93 DCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLV 172 (382)
Q Consensus 93 ~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V 172 (382)
+++||+++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++. . .+.+++|+
T Consensus 1 ~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~--~~~~i~~v 73 (213)
T cd03235 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----K--ERKRIGYV 73 (213)
T ss_pred CcccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----H--HHhheEEe
Confidence 3689999998888999999999999999999999999999999999999999999999998642 1 12369999
Q ss_pred ecCCCCC--CCCCHHHHHHhhHhhcCC---CCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 016804 173 FQSAALF--DSLTVRENVGFLLYENSK---MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (382)
Q Consensus 173 ~Q~~~l~--~~lTV~eni~~~~~~~~~---~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~ 247 (382)
||++.++ ..+||+||+.+....... ...+...+++.++++.+++.+..++++.+||||||||++|||||+.
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~---- 149 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQ---- 149 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHc----
Confidence 9998763 237999999875421111 1123345678899999999988999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 248 ~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|++|||||||+|||+.++..+.+.|+++++++ .|+|++|||++++.++|||+
T Consensus 150 ---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tvi~~sH~~~~~~~~~d~i 202 (213)
T cd03235 150 ---DPDLLLLDEPFAGVDPKTQEDIYELLRELRREG----------MTILVVTHDLGLVLEYFDRV 202 (213)
T ss_pred ---CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhcCEE
Confidence 699999999999999999999999999998765 59999999999999999988
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-50 Score=385.12 Aligned_cols=209 Identities=36% Similarity=0.541 Sum_probs=186.8
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
.++|+++||+++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .+.+
T Consensus 10 ~~~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-------~~~~ 82 (257)
T PRK11247 10 GTPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAE-------ARED 82 (257)
T ss_pred CCcEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHH-------hhCc
Confidence 366999999999998889999999999999999999999999999999999999999999999986421 1236
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~ 248 (382)
++|+||++.+|+.+||+||+.++.. . ...+++.++++.+||.+..++++.+||||||||++|||||+.
T Consensus 83 i~~v~q~~~l~~~~tv~enl~~~~~-----~--~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~----- 150 (257)
T PRK11247 83 TRLMFQDARLLPWKKVIDNVGLGLK-----G--QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIH----- 150 (257)
T ss_pred eEEEecCccCCCCCcHHHHHHhccc-----c--hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhc-----
Confidence 9999999999998999999987531 1 123567889999999988999999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheeh
Q 016804 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVII 327 (382)
Q Consensus 249 a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~ 327 (382)
+|++|||||||+|||+.++..+.++|+++.++ + .|+|++|||++++..+|||+
T Consensus 151 --~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~----------~tviivsHd~~~~~~~~d~i-------------- 204 (257)
T PRK11247 151 --RPGLLLLDEPLGALDALTRIEMQDLIESLWQQHG----------FTVLLVTHDVSEAVAMADRV-------------- 204 (257)
T ss_pred --CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHhCCEE--------------
Confidence 69999999999999999999999999999654 4 59999999999999999988
Q ss_pred hccCCCCcccccccEEEEEeCCeEEEEeccc
Q 016804 328 LGAVAPDKEVFFIYRLIFLYEGKIVWQGMTH 358 (382)
Q Consensus 328 ~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~ 358 (382)
++|++|+++.+++..
T Consensus 205 ----------------~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 205 ----------------LLIEEGKIGLDLTVD 219 (257)
T ss_pred ----------------EEEECCEEEeecccc
Confidence 999999999988543
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-50 Score=426.56 Aligned_cols=240 Identities=25% Similarity=0.441 Sum_probs=206.7
Q ss_pred CcceEEEEeEEEEeCC-----------eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECC
Q 016804 88 GDVLIDCRNVYKSFGE-----------KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRA 156 (382)
Q Consensus 88 ~~~~I~~~nvs~~yg~-----------~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~ 156 (382)
..++|+++||+++|+. +++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.
T Consensus 310 ~~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~ 389 (623)
T PRK10261 310 GEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRID 389 (623)
T ss_pred CCceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECC
Confidence 3578999999999961 47999999999999999999999999999999999999999999999999876
Q ss_pred CCCChh-hhccceEEEEecCC--CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHH
Q 016804 157 GLISDE-EISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMK 232 (382)
Q Consensus 157 ~~~~~~-~~~~~~Ig~V~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqr 232 (382)
...... ...+.+|+||||++ .+++.+||.+|+.+.+..+......+..+++.++|+.+||. +..+++|++||||||
T Consensus 390 ~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqr 469 (623)
T PRK10261 390 TLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQR 469 (623)
T ss_pred cCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHH
Confidence 432111 11233699999998 58889999999988653222123444567788999999996 678999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhc
Q 016804 233 KRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVD 311 (382)
Q Consensus 233 QRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aD 311 (382)
|||+|||||+. +|+||||||||++||+.++.+++++|++++++ | .|||+||||++++.++||
T Consensus 470 QRv~iAraL~~-------~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g----------~tvi~isHdl~~v~~~~d 532 (623)
T PRK10261 470 QRICIARALAL-------NPKVIIADEAVSALDVSIRGQIINLLLDLQRDFG----------IAYLFISHDMAVVERISH 532 (623)
T ss_pred HHHHHHHHHhc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCC
Confidence 99999999997 69999999999999999999999999999876 4 599999999999999999
Q ss_pred hhccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 312 RLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 312 rv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
|| ++|++|+|++.|++.++. .+.+++++.++..
T Consensus 533 ri------------------------------~vl~~G~iv~~g~~~~i~~~p~~~~~~~l~~~ 566 (623)
T PRK10261 533 RV------------------------------AVMYLGQIVEIGPRRAVFENPQHPYTRKLMAA 566 (623)
T ss_pred EE------------------------------EEEECCEEEEecCHHHHhcCCCCHHHHHHHhh
Confidence 88 999999999999988875 4678999888764
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-50 Score=386.69 Aligned_cols=222 Identities=33% Similarity=0.523 Sum_probs=190.6
Q ss_pred eEEEEeEEEEeCC-----eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCC--hhh
Q 016804 91 LIDCRNVYKSFGE-----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS--DEE 163 (382)
Q Consensus 91 ~I~~~nvs~~yg~-----~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~--~~~ 163 (382)
.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..... ...
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 4899999999974 369999999999999999999999999999999999999999999999998754211 111
Q ss_pred hccceEEEEecCC--CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHHHHH
Q 016804 164 ISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARS 240 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaIArA 240 (382)
..+.+|+|+||++ .+|+ .|++||+.++.... +...++..+.+.++++.+||. ...++++.+||||||||++||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~a 159 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF-GVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGI 159 (280)
T ss_pred HHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHH
Confidence 1233699999997 4665 69999998764322 234455566788899999997 57799999999999999999999
Q ss_pred HhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccc
Q 016804 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFG 320 (382)
Q Consensus 241 L~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~ 320 (382)
|+. +|++|||||||++||+.++..+.+.|+++++++ .|||++|||++++..+||++
T Consensus 160 l~~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tiiivsH~~~~~~~~~d~i------- 215 (280)
T PRK13649 160 LAM-------EPKILVLDEPTAGLDPKGRKELMTLFKKLHQSG----------MTIVLVTHLMDDVANYADFV------- 215 (280)
T ss_pred HHc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCC----------CEEEEEeccHHHHHHhCCEE-------
Confidence 997 699999999999999999999999999997765 59999999999999999988
Q ss_pred cchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 321 HIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.|+++++.
T Consensus 216 -----------------------~~l~~G~i~~~g~~~~~~ 233 (280)
T PRK13649 216 -----------------------YVLEKGKLVLSGKPKDIF 233 (280)
T ss_pred -----------------------EEEECCEEEEeCCHHHHh
Confidence 999999999999877764
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-49 Score=378.00 Aligned_cols=238 Identities=28% Similarity=0.482 Sum_probs=199.1
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEECCCCCChhh
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLISDEE 163 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p-----~sG~I~i~G~~i~~~~~~~~ 163 (382)
.++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++........
T Consensus 4 ~~~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 4 EIILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred cceEEEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 3579999999999988999999999999999999999999999999999999763 48999999998754211111
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc----ccccCCCCCCChHHHHHHHHHH
Q 016804 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALAR 239 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~----~~~~~~~~~LSGGqrQRVaIAr 239 (382)
..+..|+|+||++.+|+ .||+||+.+.............++.+.++++.+++. ...++.+.+||||||||++|||
T Consensus 84 ~~~~~i~~~~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lar 162 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFP-KSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIAR 162 (253)
T ss_pred hhhceEEEEecCCccCc-ccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHH
Confidence 12336999999999998 499999998653222122334456678889998874 3468899999999999999999
Q ss_pred HHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccc
Q 016804 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIF 319 (382)
Q Consensus 240 AL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~ 319 (382)
||+. +|+++||||||+|||+.++..+.++|+++.++ .|+|++||+++++..+|||+
T Consensus 163 al~~-------~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~-----------~tvii~sh~~~~~~~~~d~v------ 218 (253)
T PRK14261 163 TLAV-------NPEVILMDEPCSALDPIATAKIEDLIEDLKKE-----------YTVIIVTHNMQQAARVSDYT------ 218 (253)
T ss_pred HHhc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHhhC-----------ceEEEEEcCHHHHHhhCCEE------
Confidence 9997 59999999999999999999999999999753 49999999999999999988
Q ss_pred ccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcCC
Q 016804 320 GHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASGS 375 (382)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~~ 375 (382)
++|++|++++.|+++++. .+.++..+.|..+.
T Consensus 219 ------------------------~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 251 (253)
T PRK14261 219 ------------------------GFMYLGKLIEFDKTTQIFENPHEELTENYITGR 251 (253)
T ss_pred ------------------------EEEECCEEEEcCCHHHHHhCCCcHHHHHHhccc
Confidence 999999999999888865 34567888777653
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-50 Score=385.22 Aligned_cols=223 Identities=34% Similarity=0.583 Sum_probs=192.7
Q ss_pred cceEEEEeEEEEeC--CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhcc
Q 016804 89 DVLIDCRNVYKSFG--EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (382)
Q Consensus 89 ~~~I~~~nvs~~yg--~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~ 166 (382)
+++|+++|++++|+ ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... .... +
T Consensus 5 ~~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~-~~~~-~ 82 (271)
T PRK13632 5 SVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKEN-LKEI-R 82 (271)
T ss_pred ceEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCC-HHHH-h
Confidence 46899999999995 467999999999999999999999999999999999999999999999999875321 1122 3
Q ss_pred ceEEEEecCCC-CCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCC
Q 016804 167 LRIGLVFQSAA-LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (382)
Q Consensus 167 ~~Ig~V~Q~~~-l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~ 245 (382)
.+|+|+||++. .|+.+|++||+.++... .....++..+++.++++.+||.++.++++.+||||||||++|||||+.
T Consensus 83 ~~i~~v~q~~~~~~~~~tv~enl~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~-- 159 (271)
T PRK13632 83 KKIGIIFQNPDNQFIGATVEDDIAFGLEN-KKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLAL-- 159 (271)
T ss_pred cceEEEEeCHHHhcCcccHHHHHHhHHHH-cCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHc--
Confidence 36999999984 56678999999886532 223445556678899999999999999999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchhe
Q 016804 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVV 325 (382)
Q Consensus 246 ~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~ 325 (382)
+|++|||||||+|||+.++..++++|+++.+++. .|+|++||+++++. .||++
T Consensus 160 -----~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~---------~tiii~sH~~~~~~-~~d~v------------ 212 (271)
T PRK13632 160 -----NPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRK---------KTLISITHDMDEAI-LADKV------------ 212 (271)
T ss_pred -----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC---------cEEEEEEechhHHh-hCCEE------------
Confidence 6999999999999999999999999999977632 59999999999986 78877
Q ss_pred ehhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 326 IILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 326 ~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.|+++++.
T Consensus 213 ------------------~~l~~G~i~~~g~~~~~~ 230 (271)
T PRK13632 213 ------------------IVFSEGKLIAQGKPKEIL 230 (271)
T ss_pred ------------------EEEECCEEEEecCHHHHh
Confidence 999999999999877754
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-49 Score=383.31 Aligned_cols=238 Identities=29% Similarity=0.479 Sum_probs=197.1
Q ss_pred CcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEECCCCCChh
Q 016804 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-----PDKGEVYIRGRKRAGLISDE 162 (382)
Q Consensus 88 ~~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~-----p~sG~I~i~G~~i~~~~~~~ 162 (382)
+.++|+++||+++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++.......
T Consensus 21 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 21 KKVVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred CceEEEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 3568999999999998889999999999999999999999999999999999997 69999999999874211111
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCC----cccccCCCCCCChHHHHHHHHH
Q 016804 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL----KGVEDRLPSELSGGMKKRVALA 238 (382)
Q Consensus 163 ~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL----~~~~~~~~~~LSGGqrQRVaIA 238 (382)
...+.+++|+||++.+|+ .|++||+.++............++.+.++++.+++ .+..++++.+||||||||++||
T Consensus 101 ~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~la 179 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIA 179 (271)
T ss_pred HHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHH
Confidence 112336999999999987 59999998865322111223334556777887754 4567889999999999999999
Q ss_pred HHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccc
Q 016804 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQI 318 (382)
Q Consensus 239 rAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~ 318 (382)
|||+. +|++|||||||+|||+.++..+.++|+++.+ + .|+|++|||++++.++|||+
T Consensus 180 raL~~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~----------~tiiivsH~~~~i~~~~d~i----- 236 (271)
T PRK14238 180 RCLAI-------EPDVILMDEPTSALDPISTLKVEELVQELKK-D----------YSIIIVTHNMQQAARISDKT----- 236 (271)
T ss_pred HHHHc-------CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-C----------CEEEEEEcCHHHHHHhCCEE-----
Confidence 99997 6999999999999999999999999999965 4 49999999999999999988
Q ss_pred cccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 319 FGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
++|++|++++.|+++++. .+.++.+.+++..
T Consensus 237 -------------------------~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 268 (271)
T PRK14238 237 -------------------------AFFLNGYVNEYDDTDKIFSNPSDKRTEDYITG 268 (271)
T ss_pred -------------------------EEEECCEEEEeCCHHHHHcCCCCHHHHHHHhh
Confidence 999999999999888875 3455666766653
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-49 Score=375.93 Aligned_cols=236 Identities=28% Similarity=0.459 Sum_probs=195.7
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC--C---CccEEEECCEECCCCCChhhh
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA--P---DKGEVYIRGRKRAGLISDEEI 164 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~--p---~sG~I~i~G~~i~~~~~~~~~ 164 (382)
++|+++||+++|+++.+|+++||+|.+||+++|+||||||||||+++|+|+.+ | ++|+|+++|+++.........
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 83 (252)
T PRK14255 4 KIITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQ 83 (252)
T ss_pred ceEEEEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHH
Confidence 57999999999998889999999999999999999999999999999999975 5 599999999987431111111
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc----ccccCCCCCCChHHHHHHHHHHH
Q 016804 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALARS 240 (382)
Q Consensus 165 ~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~----~~~~~~~~~LSGGqrQRVaIArA 240 (382)
.+.+++|+||++.+|+ .|+++|+.+..........+...+.+.++++.+++. +..++.+.+||||||||++||||
T Consensus 84 ~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~lara 162 (252)
T PRK14255 84 LRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARV 162 (252)
T ss_pred hcCeEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHH
Confidence 2346999999999998 699999988643221112233345667788888763 45688999999999999999999
Q ss_pred HhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccc
Q 016804 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFG 320 (382)
Q Consensus 241 L~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~ 320 (382)
|+. +|++|||||||+|||+.++..+.++|+++.++ .|+|++||+++++.++|||+
T Consensus 163 l~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-----------~tii~vsH~~~~~~~~~d~i------- 217 (252)
T PRK14255 163 LAV-------KPDVILLDEPTSALDPISSTQIENMLLELRDQ-----------YTIILVTHSMHQASRISDKT------- 217 (252)
T ss_pred Hhc-------CCCEEEEcCCCccCCHHHHHHHHHHHHHHHhC-----------CEEEEEECCHHHHHHhCCEE-------
Confidence 997 69999999999999999999999999999763 49999999999999999988
Q ss_pred cchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 321 HIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
++|++|++++.|++.++. .+.+....+|+.+
T Consensus 218 -----------------------~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~ 249 (252)
T PRK14255 218 -----------------------AFFLTGNLIEFADTKQMFLNPKEKETEDYITG 249 (252)
T ss_pred -----------------------EEEECCEEEEeCCHHHHhcCCCChHHHHHhcc
Confidence 999999999999887765 3445566666654
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-50 Score=381.59 Aligned_cols=222 Identities=32% Similarity=0.447 Sum_probs=192.6
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... .... +.+++|
T Consensus 2 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~-~~~~-~~~i~~ 79 (256)
T TIGR03873 2 LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLS-RRAR-ARRVAL 79 (256)
T ss_pred ceEEeEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCC-HHHH-hhheEE
Confidence 68999999999899999999999999999999999999999999999999999999999999875432 2221 235999
Q ss_pred EecCCCCCCCCCHHHHHHhhHhhc---CCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 016804 172 VFQSAALFDSLTVRENVGFLLYEN---SKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~~~~~~---~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~ 248 (382)
++|++.+++.+||+||+.++.... ......+..+++.++++.+++.+..++++.+||||||||++|||||+.
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~----- 154 (256)
T TIGR03873 80 VEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQ----- 154 (256)
T ss_pred ecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhc-----
Confidence 999998777899999998753111 011122334567889999999988999999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehh
Q 016804 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIIL 328 (382)
Q Consensus 249 a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~ 328 (382)
+|+++||||||+|||+.++..+.++|+++++++ .|+|++|||++++..+|||+
T Consensus 155 --~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tiii~sH~~~~~~~~~d~i--------------- 207 (256)
T TIGR03873 155 --EPKLLLLDEPTNHLDVRAQLETLALVRELAATG----------VTVVAALHDLNLAASYCDHV--------------- 207 (256)
T ss_pred --CCCEEEEcCccccCCHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEE---------------
Confidence 699999999999999999999999999998765 59999999999999999988
Q ss_pred ccCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 329 GAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 329 ~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|++++.|+.+++..
T Consensus 208 ---------------~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 208 ---------------VVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred ---------------EEEeCCCEEEecCHHHhhC
Confidence 9999999999998777653
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-49 Score=383.52 Aligned_cols=235 Identities=31% Similarity=0.486 Sum_probs=197.5
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEECCCC-CChh
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-----PDKGEVYIRGRKRAGL-ISDE 162 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~-----p~sG~I~i~G~~i~~~-~~~~ 162 (382)
+++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++... ....
T Consensus 11 ~~~l~i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~ 90 (269)
T PRK14259 11 NIIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPV 90 (269)
T ss_pred CceEEEEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHH
Confidence 467999999999998899999999999999999999999999999999999987 6999999999986421 1112
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc----ccccCCCCCCChHHHHHHHHH
Q 016804 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALA 238 (382)
Q Consensus 163 ~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~----~~~~~~~~~LSGGqrQRVaIA 238 (382)
.. +.+|+|+||++.+|+ .||+||+.+..... +.. ....+++.++++.+++. +..++++.+||||||||++||
T Consensus 91 ~~-~~~i~~v~q~~~l~~-~tv~enl~~~~~~~-~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~la 166 (269)
T PRK14259 91 EV-RRRIGMVFQQPNPFP-KSIYENIAFGARIN-GYT-GDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIA 166 (269)
T ss_pred HH-hhceEEEccCCccch-hhHHHHHhhhhhhc-CCc-HHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHH
Confidence 22 236999999999998 59999998865322 222 23345667788888763 457889999999999999999
Q ss_pred HHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccc
Q 016804 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQI 318 (382)
Q Consensus 239 rAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~ 318 (382)
|||+. +|++|||||||+|||+.++..+.++|+++++ + .|+|++|||++++.++|||+
T Consensus 167 ral~~-------~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~----------~tiiivtH~~~~~~~~~d~i----- 223 (269)
T PRK14259 167 RTIAI-------EPEVILMDEPCSALDPISTLKIEETMHELKK-N----------FTIVIVTHNMQQAVRVSDMT----- 223 (269)
T ss_pred HHHhc-------CCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-C----------CEEEEEeCCHHHHHHhcCEE-----
Confidence 99997 6999999999999999999999999999954 4 49999999999999999988
Q ss_pred cccchheehhccCCCCcccccccEEEEEeC-----------CeEEEEecccccc-cCCCHHHHHHHcCC
Q 016804 319 FGHIDVVIILGAVAPDKEVFFIYRLIFLYE-----------GKIVWQGMTHEFT-SSSNPIVQQFASGS 375 (382)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~-----------G~i~~~g~~~~~~-~~~~~~~~~~~~~~ 375 (382)
++|++ |++++.|++.++. .+.++....++.+.
T Consensus 224 -------------------------~~l~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (269)
T PRK14259 224 -------------------------AFFNAEEVEGGSGGKVGYLVEFNETKKIFNSPKQKATQDYISGK 267 (269)
T ss_pred -------------------------EEEeccccccccccccceEEEeCCHHHHHhCcCChHHHHHHhcc
Confidence 88886 6789999988875 45677777777653
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-50 Score=422.59 Aligned_cols=272 Identities=24% Similarity=0.343 Sum_probs=210.3
Q ss_pred HHhhhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCcceEEEEe
Q 016804 17 KSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRN 96 (382)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~n 96 (382)
..++.++..+++.. .....+....+|+...+..|+....... . ..+.....-|+++|
T Consensus 298 ~~~~~pl~~l~~~~-----~~~~~~~~~~~ri~~~l~~~~~~~~~~~----------------~--~~~~~~~~~i~~~~ 354 (588)
T PRK11174 298 PEFYQPLRDLGTFY-----HAKAQAVGAAESLVTFLETPLAHPQQGE----------------K--ELASNDPVTIEAED 354 (588)
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCCcccCCCc----------------c--ccCCCCCceEEEEe
Confidence 34456666666555 5667788889999998877642111000 0 00000112399999
Q ss_pred EEEEe-CCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecC
Q 016804 97 VYKSF-GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQS 175 (382)
Q Consensus 97 vs~~y-g~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~ 175 (382)
|++.| +++++|+|+||+|++||.+||+||||||||||+++|+|++ |++|+|++||.++...... .. +.+|+||+|+
T Consensus 355 vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~-~l-r~~i~~v~Q~ 431 (588)
T PRK11174 355 LEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPE-SW-RKHLSWVGQN 431 (588)
T ss_pred eEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHH-HH-HhheEEecCC
Confidence 99765 5678999999999999999999999999999999999999 9999999999998775433 32 3369999999
Q ss_pred CCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChHHHHHHHHHHHHhcC
Q 016804 176 AALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVALARSIIFD 244 (382)
Q Consensus 176 ~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGGqrQRVaIArAL~~~ 244 (382)
+.+|+. |++|||.++. ...++ +++.++++.++++++.++.| ..||||||||++|||||++
T Consensus 432 ~~LF~~-TI~eNI~~g~---~~~~~----eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~- 502 (588)
T PRK11174 432 PQLPHG-TLRDNVLLGN---PDASD----EQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQ- 502 (588)
T ss_pred CcCCCc-CHHHHhhcCC---CCCCH----HHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhc-
Confidence 999985 9999998852 12333 44667777777766554443 5799999999999999998
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchh
Q 016804 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDV 324 (382)
Q Consensus 245 ~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~ 324 (382)
+|+|||||||||+||+.+++.+++.|+++.++ +|+|+|||+++.+.. ||+|
T Consensus 503 ------~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~-----------~TvIiItHrl~~i~~-aD~I----------- 553 (588)
T PRK11174 503 ------PCQLLLLDEPTASLDAHSEQLVMQALNAASRR-----------QTTLMVTHQLEDLAQ-WDQI----------- 553 (588)
T ss_pred ------CCCEEEEeCCccCCCHHHHHHHHHHHHHHhCC-----------CEEEEEecChHHHHh-CCEE-----------
Confidence 59999999999999999999999999998643 499999999998865 6766
Q ss_pred eehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHH
Q 016804 325 VIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFA 372 (382)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 372 (382)
++|++|+|+++|+.+++... ++...+++
T Consensus 554 -------------------ivl~~G~i~e~G~~~eL~~~-~~~y~~l~ 581 (588)
T PRK11174 554 -------------------WVMQDGQIVQQGDYAELSQA-GGLFATLL 581 (588)
T ss_pred -------------------EEEeCCeEeecCCHHHHHhc-chHHHHHH
Confidence 99999999999976666543 34444443
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-49 Score=375.97 Aligned_cols=234 Identities=30% Similarity=0.503 Sum_probs=197.1
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEECCCCCChhhhc
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLISDEEIS 165 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p-----~sG~I~i~G~~i~~~~~~~~~~ 165 (382)
+|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|.++........ .
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~-~ 81 (249)
T PRK14253 3 KFNIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVAD-L 81 (249)
T ss_pred eEEEeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHH-H
Confidence 58999999999988999999999999999999999999999999999999986 59999999998642111112 2
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc----ccccCCCCCCChHHHHHHHHHHHH
Q 016804 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALARSI 241 (382)
Q Consensus 166 ~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~----~~~~~~~~~LSGGqrQRVaIArAL 241 (382)
+..++|+||++.+|+ .|+.||+.+..............+++.++++.+++. +..++++.+|||||||||+|||||
T Consensus 82 ~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 160 (249)
T PRK14253 82 RIKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTI 160 (249)
T ss_pred HhheeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHH
Confidence 336999999999997 799999987643221112334456677889999874 456788999999999999999999
Q ss_pred hcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccccc
Q 016804 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGH 321 (382)
Q Consensus 242 ~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~ 321 (382)
+. +|++|||||||+|||+.++..+.++|+++.++ .|||++||+++++..+|||+
T Consensus 161 ~~-------~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-----------~tii~~sh~~~~~~~~~d~i-------- 214 (249)
T PRK14253 161 AM-------EPDVILMDEPTSALDPIATHKIEELMEELKKN-----------YTIVIVTHSMQQARRISDRT-------- 214 (249)
T ss_pred Hc-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHhcC-----------CeEEEEecCHHHHHHhCCEE--------
Confidence 97 69999999999999999999999999999753 49999999999999999988
Q ss_pred chheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 322 IDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
++|++|++++.|+++++. .+.++.+..++.+
T Consensus 215 ----------------------~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 246 (249)
T PRK14253 215 ----------------------AFFLMGELVEHDDTQVIFSNPKDDRTQGYVNG 246 (249)
T ss_pred ----------------------EEEECCEEEEeCCHHHHHcCCCChHHHHHhhc
Confidence 999999999999887765 3456777777665
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-50 Score=399.23 Aligned_cols=215 Identities=32% Similarity=0.507 Sum_probs=187.3
Q ss_pred eEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCC--hhhhccceEEEEe
Q 016804 96 NVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS--DEEISGLRIGLVF 173 (382)
Q Consensus 96 nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~--~~~~~~~~Ig~V~ 173 (382)
||+|+|+++. + ++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++..... .....+.+|+|+|
T Consensus 4 ~l~~~~~~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~ 81 (354)
T TIGR02142 4 RFSKRLGDFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVF 81 (354)
T ss_pred EEEEEECCEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEe
Confidence 8999998766 4 9999999999999999999999999999999999999999999998753211 0011233699999
Q ss_pred cCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCc
Q 016804 174 QSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPE 253 (382)
Q Consensus 174 Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~ 253 (382)
|++.+|+++||+||+.++.... ...+..+++.++++.+||.++.++++.+|||||||||+|||||+. +|+
T Consensus 82 q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~-------~p~ 151 (354)
T TIGR02142 82 QEARLFPHLSVRGNLRYGMKRA---RPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLS-------SPR 151 (354)
T ss_pred cCCccCCCCcHHHHHHHHhhcc---ChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHc-------CCC
Confidence 9999999999999999865321 223345568899999999999999999999999999999999997 699
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccCC
Q 016804 254 VLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVA 332 (382)
Q Consensus 254 iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~ 332 (382)
+|||||||+|||+.++..+.+.|++++++ + .|+|++|||++++..+|||+
T Consensus 152 lllLDEPts~LD~~~~~~l~~~L~~l~~~~g----------~tiiivtH~~~~~~~~~d~i------------------- 202 (354)
T TIGR02142 152 LLLMDEPLAALDDPRKYEILPYLERLHAEFG----------IPILYVSHSLQEVLRLADRV------------------- 202 (354)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHHHHhcC----------CEEEEEecCHHHHHHhCCEE-------------------
Confidence 99999999999999999999999999876 4 59999999999999999988
Q ss_pred CCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 333 PDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 333 ~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|++++.|+++++..
T Consensus 203 -----------~~l~~G~i~~~g~~~~~~~ 221 (354)
T TIGR02142 203 -----------VVLEDGRVAAAGPIAEVWA 221 (354)
T ss_pred -----------EEEeCCEEEEECCHHHHhc
Confidence 9999999999998887653
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-50 Score=415.46 Aligned_cols=224 Identities=24% Similarity=0.392 Sum_probs=196.2
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
++|+++||+++|+++++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.... .....+.+|
T Consensus 3 ~~i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~-~~~~~~~~i 81 (501)
T PRK10762 3 ALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNG-PKSSQEAGI 81 (501)
T ss_pred ceEEEeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC-HHHHHhCCE
Confidence 4799999999999889999999999999999999999999999999999999999999999999875321 222223369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhc---CCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYEN---SKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT 246 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~---~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~ 246 (382)
+|+||++.+++.+||+||+.++.... ...+..+.++++.++++.+|+.+..++++.+|||||||||+|||||+.
T Consensus 82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~--- 158 (501)
T PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSF--- 158 (501)
T ss_pred EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhc---
Confidence 99999999999999999998864221 112334455678899999999988899999999999999999999997
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchhee
Q 016804 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVI 326 (382)
Q Consensus 247 ~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~ 326 (382)
+|++|||||||++||+.++..+.++|+++++++ .|+|++|||++++..+|||+
T Consensus 159 ----~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~----------~tvii~sHd~~~~~~~~d~i------------- 211 (501)
T PRK10762 159 ----ESKVIIMDEPTDALTDTETESLFRVIRELKSQG----------RGIVYISHRLKEIFEICDDV------------- 211 (501)
T ss_pred ----CCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHhCCEE-------------
Confidence 699999999999999999999999999997765 59999999999999999988
Q ss_pred hhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 327 ILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 327 ~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.|++.++.
T Consensus 212 -----------------~~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 212 -----------------TVFRDGQFIAEREVADLT 229 (501)
T ss_pred -----------------EEEeCCEEEEecCcCcCC
Confidence 999999999999877653
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-49 Score=385.77 Aligned_cols=238 Identities=30% Similarity=0.495 Sum_probs=197.8
Q ss_pred CcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEECCCCCChh
Q 016804 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-----PDKGEVYIRGRKRAGLISDE 162 (382)
Q Consensus 88 ~~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~-----p~sG~I~i~G~~i~~~~~~~ 162 (382)
+.++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++.......
T Consensus 36 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~ 115 (286)
T PRK14275 36 GKPHVVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE 115 (286)
T ss_pred CceEEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence 5568999999999988889999999999999999999999999999999999864 49999999999864321111
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc----ccccCCCCCCChHHHHHHHHH
Q 016804 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALA 238 (382)
Q Consensus 163 ~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~----~~~~~~~~~LSGGqrQRVaIA 238 (382)
...+.+|+|+||++.+|+. ||.||+.++.......+....++++.++++.+++. +..++++.+|||||||||+||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LA 194 (286)
T PRK14275 116 VLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVA 194 (286)
T ss_pred HHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHH
Confidence 1123369999999999984 99999998653221112333456677889999873 567889999999999999999
Q ss_pred HHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccc
Q 016804 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQI 318 (382)
Q Consensus 239 rAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~ 318 (382)
|||+. +|++|||||||+|||+.++..+.+.|+++.+ + .|||++|||++++.++|||+
T Consensus 195 raL~~-------~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~----------~tvIivsH~~~~~~~~~d~i----- 251 (286)
T PRK14275 195 RTLAV-------EPEILLLDEPTSALDPKATAKIEDLIQELRG-S----------YTIMIVTHNMQQASRVSDYT----- 251 (286)
T ss_pred HHHhc-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-C----------CeEEEEeCCHHHHHHhCCEE-----
Confidence 99997 6999999999999999999999999999865 3 49999999999999999988
Q ss_pred cccchheehhccCCCCcccccccEEEEEeCCeEEEEeccccccc-CCCHHHHHHHcC
Q 016804 319 FGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFASG 374 (382)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~~ 374 (382)
++|++|++++.|++.++.. +.++....++.+
T Consensus 252 -------------------------~~L~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 283 (286)
T PRK14275 252 -------------------------MFFYEGVLVEHAPTAQLFTNPKDRMTEDYITG 283 (286)
T ss_pred -------------------------EEEECCEEEEeCCHHHHHhCCCcHHHHHHHHh
Confidence 9999999999998888753 445666666543
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-50 Score=386.64 Aligned_cols=222 Identities=32% Similarity=0.532 Sum_probs=193.3
Q ss_pred cceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCc---cEEEECCEECCCCCChhh
Q 016804 89 DVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDK---GEVYIRGRKRAGLISDEE 163 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~s---G~I~i~G~~i~~~~~~~~ 163 (382)
+.+|+++|++++|++ +++|+++||+|++||++||+||||||||||+++|+|+++|++ |+|+++|+++... ....
T Consensus 3 ~~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~-~~~~ 81 (282)
T PRK13640 3 DNIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAK-TVWD 81 (282)
T ss_pred CceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcC-CHHH
Confidence 457999999999964 469999999999999999999999999999999999999998 8999999987532 1111
Q ss_pred hccceEEEEecCCC-CCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHh
Q 016804 164 ISGLRIGLVFQSAA-LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSII 242 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~~-l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~ 242 (382)
.+.+|||+||++. +++..||+||+.+.... .+.+.++..+++.++++.+||.++.++++.+||||||||++|||||+
T Consensus 82 -~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~-~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~ 159 (282)
T PRK13640 82 -IREKVGIVFQNPDNQFVGATVGDDVAFGLEN-RAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILA 159 (282)
T ss_pred -HHhheEEEEECHHHhhccCCHHHHHHhhHHh-CCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHH
Confidence 2336999999984 56678999999876432 23455666778899999999999999999999999999999999999
Q ss_pred cCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccccc
Q 016804 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGH 321 (382)
Q Consensus 243 ~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~ 321 (382)
. +|++|||||||+|||+.++..+.++|++++++ | +|||++||+++++. .|||+
T Consensus 160 ~-------~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g----------~tvli~tH~~~~~~-~~d~i-------- 213 (282)
T PRK13640 160 V-------EPKIIILDESTSMLDPAGKEQILKLIRKLKKKNN----------LTVISITHDIDEAN-MADQV-------- 213 (282)
T ss_pred c-------CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEecCHHHHH-hCCEE--------
Confidence 7 69999999999999999999999999999865 5 59999999999985 78877
Q ss_pred chheehhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 322 IDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.|+++++.
T Consensus 214 ----------------------~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 214 ----------------------LVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred ----------------------EEEECCEEEEeCCHHHHh
Confidence 999999999999887764
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-49 Score=380.23 Aligned_cols=240 Identities=31% Similarity=0.479 Sum_probs=199.7
Q ss_pred CCCcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEECCCCCC
Q 016804 86 DDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-----PDKGEVYIRGRKRAGLIS 160 (382)
Q Consensus 86 ~~~~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~-----p~sG~I~i~G~~i~~~~~ 160 (382)
++..++|+++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|.++.....
T Consensus 20 ~~~~~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 20 SDEQTALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CCCCcEEEEEEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 344568999999999998899999999999999999999999999999999999988 489999999998753111
Q ss_pred hhhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc----ccccCCCCCCChHHHHHHH
Q 016804 161 DEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVA 236 (382)
Q Consensus 161 ~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~----~~~~~~~~~LSGGqrQRVa 236 (382)
.....+.+++|+||++.+|+. |++||+.+.........++..++.+.++++.+++. +..++.+.+|||||||||+
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~ 178 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLV 178 (272)
T ss_pred CHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHH
Confidence 111123469999999999985 99999987643221112333456678889999985 3568889999999999999
Q ss_pred HHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccc
Q 016804 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLF 316 (382)
Q Consensus 237 IArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~ 316 (382)
|||||+. +|++|||||||+|||+.++..+.++|+++.+ + .|+|++||+++++.++|||+
T Consensus 179 laral~~-------~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~----------~tiiivtH~~~~~~~~~d~i--- 237 (272)
T PRK14236 179 IARAIAI-------EPEVLLLDEPTSALDPISTLKIEELITELKS-K----------YTIVIVTHNMQQAARVSDYT--- 237 (272)
T ss_pred HHHHHHC-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-C----------CeEEEEeCCHHHHHhhCCEE---
Confidence 9999997 6999999999999999999999999999975 4 49999999999999999988
Q ss_pred cccccchheehhccCCCCcccccccEEEEEeCCeEEEEeccccccc-CCCHHHHHHHcC
Q 016804 317 QIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFASG 374 (382)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~~ 374 (382)
++|++|++++.|+++++.. +.++.+..|..+
T Consensus 238 ---------------------------~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 269 (272)
T PRK14236 238 ---------------------------AFMYMGKLVEYGDTDTLFTSPAKKQTEDYITG 269 (272)
T ss_pred ---------------------------EEEECCEEEecCCHHHHhcCCCcHHHHHHhcc
Confidence 9999999999998888653 456666666554
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-50 Score=415.64 Aligned_cols=224 Identities=28% Similarity=0.434 Sum_probs=197.0
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
++|+++|++++|+++++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.... .....+.+|
T Consensus 4 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~-~~~~~~~~i 82 (510)
T PRK09700 4 PYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLD-HKLAAQLGI 82 (510)
T ss_pred ceEEEeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCC-HHHHHHCCe
Confidence 5799999999999889999999999999999999999999999999999999999999999999875432 222223369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhc---CC---CCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhc
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYEN---SK---MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIF 243 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~---~~---~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~ 243 (382)
+||||++.+++.+||+||+.++.... .+ .+..+..+++.++++.+||.+..++++.+|||||||||+|||||+.
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~ 162 (510)
T PRK09700 83 GIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLML 162 (510)
T ss_pred EEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhc
Confidence 99999999999999999998754211 11 1233455678899999999988999999999999999999999997
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccch
Q 016804 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHID 323 (382)
Q Consensus 244 ~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~ 323 (382)
+|++|||||||+|||+.++..+.++|++++++| +|||+||||++++..+|||+
T Consensus 163 -------~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g----------~tiiivsHd~~~~~~~~d~v---------- 215 (510)
T PRK09700 163 -------DAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEG----------TAIVYISHKLAEIRRICDRY---------- 215 (510)
T ss_pred -------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHhCCEE----------
Confidence 699999999999999999999999999998766 59999999999999999988
Q ss_pred heehhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 324 VVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.|+++++.
T Consensus 216 --------------------~~l~~G~i~~~g~~~~~~ 233 (510)
T PRK09700 216 --------------------TVMKDGSSVCSGMVSDVS 233 (510)
T ss_pred --------------------EEEECCEEeeecchhhCC
Confidence 999999999999887764
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-49 Score=372.78 Aligned_cols=229 Identities=38% Similarity=0.595 Sum_probs=198.6
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
|+++|++++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... . .+..++|
T Consensus 1 l~~~~l~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~-~---~~~~i~~ 76 (232)
T cd03300 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLP-P---HKRPVNT 76 (232)
T ss_pred CEEEeEEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCC-h---hhcceEE
Confidence 46899999999889999999999999999999999999999999999999999999999999875421 1 1236999
Q ss_pred EecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCC
Q 016804 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~ 251 (382)
++|++.+|+.+|+.+|+.+..... +.......+++.++++.+|+.++.++.+.+||+|||||++|||||+. +
T Consensus 77 ~~q~~~~~~~~t~~~nl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~-------~ 148 (232)
T cd03300 77 VFQNYALFPHLTVFENIAFGLRLK-KLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVN-------E 148 (232)
T ss_pred EecccccCCCCcHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc-------C
Confidence 999999998899999998765322 23344556677889999999999999999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhcc
Q 016804 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGA 330 (382)
Q Consensus 252 P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~ 330 (382)
|+++||||||+|||+.++..+.++|++++++ + .|+|++||+++++.++|||+
T Consensus 149 p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~----------~tiii~sh~~~~~~~~~d~i----------------- 201 (232)
T cd03300 149 PKVLLLDEPLGALDLKLRKDMQLELKRLQKELG----------ITFVFVTHDQEEALTMSDRI----------------- 201 (232)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHhcCEE-----------------
Confidence 9999999999999999999999999999875 5 59999999999999999988
Q ss_pred CCCCcccccccEEEEEeCCeEEEEeccccccc-CCCHHHHHHH
Q 016804 331 VAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFA 372 (382)
Q Consensus 331 ~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~-~~~~~~~~~~ 372 (382)
++|++|++++.|+..++.. ..++...+|.
T Consensus 202 -------------~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~ 231 (232)
T cd03300 202 -------------AVMNKGKIQQIGTPEEIYEEPANRFVADFI 231 (232)
T ss_pred -------------EEEECCEEEecCCHHHHHhCCchHHHHHhc
Confidence 9999999999997766643 2345555553
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-50 Score=415.10 Aligned_cols=224 Identities=25% Similarity=0.394 Sum_probs=196.5
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC--CccEEEECCEECCCCCChhhhccc
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP--DKGEVYIRGRKRAGLISDEEISGL 167 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p--~sG~I~i~G~~i~~~~~~~~~~~~ 167 (382)
++|+++||+|+|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|+++|+++... ......+.
T Consensus 4 ~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~-~~~~~~~~ 82 (506)
T PRK13549 4 YLLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQAS-NIRDTERA 82 (506)
T ss_pred ceEEEeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCC-CHHHHHHC
Confidence 579999999999988999999999999999999999999999999999999996 899999999987542 22212234
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhHhhc--CCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCC
Q 016804 168 RIGLVFQSAALFDSLTVRENVGFLLYEN--SKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (382)
Q Consensus 168 ~Ig~V~Q~~~l~~~lTV~eni~~~~~~~--~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~ 245 (382)
+||||||++.+|+.+||+||+.++...+ ...+.++..+++.++++.+|+.+..++++.+|||||||||+|||||+.
T Consensus 83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~-- 160 (506)
T PRK13549 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNK-- 160 (506)
T ss_pred CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhc--
Confidence 6999999999999999999998865321 112334455678899999999988999999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchhe
Q 016804 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVV 325 (382)
Q Consensus 246 ~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~ 325 (382)
+|++|||||||++||+.++..+.++|++++++| .|+|++|||++++..+|||+
T Consensus 161 -----~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~----------~tvi~~tH~~~~~~~~~d~v------------ 213 (506)
T PRK13549 161 -----QARLLILDEPTASLTESETAVLLDIIRDLKAHG----------IACIYISHKLNEVKAISDTI------------ 213 (506)
T ss_pred -----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCcHHHHHHhcCEE------------
Confidence 699999999999999999999999999997765 59999999999999999988
Q ss_pred ehhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 326 IILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 326 ~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.|+++++.
T Consensus 214 ------------------~~l~~G~i~~~~~~~~~~ 231 (506)
T PRK13549 214 ------------------CVIRDGRHIGTRPAAGMT 231 (506)
T ss_pred ------------------EEEECCEEeeecccccCC
Confidence 999999999999887764
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-49 Score=369.17 Aligned_cols=210 Identities=35% Similarity=0.554 Sum_probs=181.4
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCC--hhhhccceE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS--DEEISGLRI 169 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~--~~~~~~~~I 169 (382)
+++ ||+|+|+++.+ |+||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|.++..... .....+.++
T Consensus 2 ~~~-~l~~~~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 77 (214)
T cd03297 2 LCV-DIEKRLPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKI 77 (214)
T ss_pred cee-eeeEecCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcE
Confidence 445 99999998766 99999999 9999999999999999999999999999999999998642111 111113369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
+|+||++.+|+.+|+.+|+.+..... .....++++.++++.+|+.+..++++.+||||||||++|||||+.
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~------ 148 (214)
T cd03297 78 GLVFQQYALFPHLNVRENLAFGLKRK---RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAA------ 148 (214)
T ss_pred EEEecCCccCCCCCHHHHHHHHHhhC---CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhc------
Confidence 99999999998899999998764221 233345667889999999988899999999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehh
Q 016804 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIIL 328 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~ 328 (382)
+|++|||||||+|||+.+++.+.++|++++++ | .|+|++|||++++..+|||+
T Consensus 149 -~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tiii~sH~~~~~~~~~d~i--------------- 202 (214)
T cd03297 149 -QPELLLLDEPFSALDRALRLQLLPELKQIKKNLN----------IPVIFVTHDLSEAEYLADRI--------------- 202 (214)
T ss_pred -CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC----------cEEEEEecCHHHHHHhcCEE---------------
Confidence 69999999999999999999999999999875 5 59999999999999999988
Q ss_pred ccCCCCcccccccEEEEEeCCeEEEEe
Q 016804 329 GAVAPDKEVFFIYRLIFLYEGKIVWQG 355 (382)
Q Consensus 329 ~~~~~~~~~~~~~~ii~l~~G~i~~~g 355 (382)
++|++|+++++|
T Consensus 203 ---------------~~l~~G~i~~~g 214 (214)
T cd03297 203 ---------------VVMEDGRLQYIG 214 (214)
T ss_pred ---------------EEEECCEEEecC
Confidence 999999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-49 Score=378.40 Aligned_cols=236 Identities=29% Similarity=0.456 Sum_probs=197.8
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEECCCCCChhhh
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLISDEEI 164 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p-----~sG~I~i~G~~i~~~~~~~~~ 164 (382)
.+|+++||+++|+++++|+|+||+|++||+++|+|+||||||||+|+|+|+++| ++|+|.++|+++.........
T Consensus 6 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 85 (259)
T PRK14260 6 PAIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININR 85 (259)
T ss_pred ceEEEEEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHh
Confidence 369999999999988899999999999999999999999999999999999985 589999999986421111111
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc----ccccCCCCCCChHHHHHHHHHHH
Q 016804 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALARS 240 (382)
Q Consensus 165 ~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~----~~~~~~~~~LSGGqrQRVaIArA 240 (382)
.+.+|+|+||++.+|+ +|++||+.++........+.+..+++.++++.+++. +..++++.+|||||||||+||||
T Consensus 86 ~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara 164 (259)
T PRK14260 86 LRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARA 164 (259)
T ss_pred hhhheEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHH
Confidence 2336999999999998 899999987653222123344456678889999884 46788999999999999999999
Q ss_pred HhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccc
Q 016804 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFG 320 (382)
Q Consensus 241 L~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~ 320 (382)
|+. +|++|||||||+|||+.++..+.++|+++.+ + .|+|++||+++++..+|||+
T Consensus 165 l~~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~----------~tiii~tH~~~~i~~~~d~i------- 219 (259)
T PRK14260 165 LAI-------KPKVLLMDEPCSALDPIATMKVEELIHSLRS-E----------LTIAIVTHNMQQATRVSDFT------- 219 (259)
T ss_pred Hhc-------CCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-C----------CEEEEEeCCHHHHHHhcCeE-------
Confidence 997 6999999999999999999999999999965 3 49999999999999999988
Q ss_pred cchheehhccCCCCcccccccEEEEEe-----CCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 321 HIDVVIILGAVAPDKEVFFIYRLIFLY-----EGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~ii~l~-----~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
++|+ +|++++.|++.++. .+.++.+.+++.+
T Consensus 220 -----------------------~~l~~~~~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~ 256 (259)
T PRK14260 220 -----------------------AFFSTDESRIGQMVEFGVTTQIFSNPLDSRTRDYVSG 256 (259)
T ss_pred -----------------------EEEeccCCCCceEEEeCCHHHHhcCCCChHHHHhhhh
Confidence 8887 59999999888875 4556777777654
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-49 Score=380.94 Aligned_cols=236 Identities=28% Similarity=0.472 Sum_probs=200.2
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEECCCCCChhh
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLISDEE 163 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p-----~sG~I~i~G~~i~~~~~~~~ 163 (382)
.++|+++||+++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|.++........
T Consensus 19 ~~~l~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 19 APAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred CcEEEEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence 4689999999999989999999999999999999999999999999999999986 79999999998753211111
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc----cccCCCCCCChHHHHHHHHHH
Q 016804 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG----VEDRLPSELSGGMKKRVALAR 239 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~----~~~~~~~~LSGGqrQRVaIAr 239 (382)
.+.+|+|+||++.+|+ +|+++|+.++..........+..+.+.++++.+++.. ..++.+.+||||||||++|||
T Consensus 99 -~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAr 176 (276)
T PRK14271 99 -FRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLAR 176 (276)
T ss_pred -HhhheEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHH
Confidence 2336999999999998 7999999876432222344455566778899999964 467889999999999999999
Q ss_pred HHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccc
Q 016804 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIF 319 (382)
Q Consensus 240 AL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~ 319 (382)
||+. +|++|||||||++||+.++..+.+.|+++.++ .|||++||+++++.++|||+
T Consensus 177 al~~-------~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~-----------~tiiivsH~~~~~~~~~dri------ 232 (276)
T PRK14271 177 TLAV-------NPEVLLLDEPTSALDPTTTEKIEEFIRSLADR-----------LTVIIVTHNLAQAARISDRA------ 232 (276)
T ss_pred HHhc-------CCCEEEEcCCcccCCHHHHHHHHHHHHHHhcC-----------CEEEEEeCCHHHHHHhCCEE------
Confidence 9997 59999999999999999999999999999753 49999999999999999988
Q ss_pred ccchheehhccCCCCcccccccEEEEEeCCeEEEEeccccccc-CCCHHHHHHHcC
Q 016804 320 GHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFASG 374 (382)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~~ 374 (382)
++|++|++++.|+++++.. +.++...+|+.+
T Consensus 233 ------------------------~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 264 (276)
T PRK14271 233 ------------------------ALFFDGRLVEEGPTEQLFSSPKHAETARYVAG 264 (276)
T ss_pred ------------------------EEEECCEEEEeCCHHHHHhCcCcHHHHHHHhh
Confidence 9999999999998888753 456777777654
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-49 Score=384.53 Aligned_cols=222 Identities=34% Similarity=0.548 Sum_probs=192.4
Q ss_pred ceEEEEeEEEEeCC------eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhh
Q 016804 90 VLIDCRNVYKSFGE------KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE 163 (382)
Q Consensus 90 ~~I~~~nvs~~yg~------~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~ 163 (382)
++|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++........
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 82 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWD 82 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHH
Confidence 57999999999963 469999999999999999999999999999999999999999999999998753211111
Q ss_pred hccceEEEEecCCC--CCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHH
Q 016804 164 ISGLRIGLVFQSAA--LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSI 241 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~~--l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL 241 (382)
.+.++||+||++. ++. .|+.+|+.|+... .+....+..+++.++++.+||.++.++++.+|||||||||+|||||
T Consensus 83 -~~~~i~~v~q~~~~~~~~-~~v~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral 159 (280)
T PRK13633 83 -IRNKAGMVFQNPDNQIVA-TIVEEDVAFGPEN-LGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGIL 159 (280)
T ss_pred -HhhheEEEecChhhhhcc-ccHHHHHHhhHhh-cCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHH
Confidence 2346999999984 454 6999999886532 2345556667789999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccc
Q 016804 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFG 320 (382)
Q Consensus 242 ~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~ 320 (382)
+. +|++|||||||+|||+.++..+.+.|++++++ | .|+|++|||++++.. |||+
T Consensus 160 ~~-------~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g----------~tillvtH~~~~~~~-~d~v------- 214 (280)
T PRK13633 160 AM-------RPECIIFDEPTAMLDPSGRREVVNTIKELNKKYG----------ITIILITHYMEEAVE-ADRI------- 214 (280)
T ss_pred Hc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEecChHHHhc-CCEE-------
Confidence 97 69999999999999999999999999999765 5 599999999999876 8877
Q ss_pred cchheehhccCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 321 HIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|++++.|+++++..
T Consensus 215 -----------------------~~l~~G~i~~~g~~~~~~~ 233 (280)
T PRK13633 215 -----------------------IVMDSGKVVMEGTPKEIFK 233 (280)
T ss_pred -----------------------EEEECCEEEEecCHHHHhc
Confidence 9999999999998877653
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-49 Score=367.43 Aligned_cols=211 Identities=32% Similarity=0.535 Sum_probs=184.0
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
++++||+++|+. .++++||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.... . .+.+++|
T Consensus 1 ~~~~~l~~~~~~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~--~~~~i~~ 74 (213)
T TIGR01277 1 LALDKVRYEYEH--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--P--YQRPVSM 74 (213)
T ss_pred CeEEeeeEEeCC--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--h--hccceEE
Confidence 468999999974 578999999999999999999999999999999999999999999999875321 1 2236999
Q ss_pred EecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCC
Q 016804 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~ 251 (382)
+||++.+|+.+|+.||+.+...... ....+.++++.++++.+|+.+..++++.+||||||||++|||||+. +
T Consensus 75 v~q~~~~~~~~t~~en~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~-------~ 146 (213)
T TIGR01277 75 LFQENNLFAHLTVRQNIGLGLHPGL-KLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVR-------P 146 (213)
T ss_pred EeccCccCCCCcHHHHHHhHhhccC-CccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhc-------C
Confidence 9999999998999999987543211 1122335567889999999988999999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhcc
Q 016804 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGA 330 (382)
Q Consensus 252 P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~ 330 (382)
|++|||||||++||+.++..+.++|+++.++ + .|+|++||+++++..+||++
T Consensus 147 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~----------~tii~vsh~~~~~~~~~d~v----------------- 199 (213)
T TIGR01277 147 NPILLLDEPFSALDPLLREEMLALVKQLCSERQ----------RTLLMVTHHLSDARAIASQI----------------- 199 (213)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHhhcCeE-----------------
Confidence 9999999999999999999999999999765 4 59999999999999999988
Q ss_pred CCCCcccccccEEEEEeCCeEEEEec
Q 016804 331 VAPDKEVFFIYRLIFLYEGKIVWQGM 356 (382)
Q Consensus 331 ~~~~~~~~~~~~ii~l~~G~i~~~g~ 356 (382)
++|++|++++.|.
T Consensus 200 -------------~~l~~g~i~~~~~ 212 (213)
T TIGR01277 200 -------------AVVSQGKIKVVSD 212 (213)
T ss_pred -------------EEEECCeEEEecC
Confidence 9999999998874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-49 Score=413.22 Aligned_cols=219 Identities=32% Similarity=0.510 Sum_probs=195.5
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
++|+++||+|+|+++++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++... ......+..|
T Consensus 10 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~~~i 88 (510)
T PRK15439 10 PLLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARL-TPAKAHQLGI 88 (510)
T ss_pred ceEEEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCC-CHHHHHhCCE
Confidence 579999999999988899999999999999999999999999999999999999999999999987543 2222223369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
||+||++.+++.+||+||+.++.. ...+.++++.++++.++|.+..++++.+|||||||||+|||||+.
T Consensus 89 ~~v~q~~~~~~~~tv~e~l~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~------ 157 (510)
T PRK15439 89 YLVPQEPLLFPNLSVKENILFGLP-----KRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMR------ 157 (510)
T ss_pred EEEeccCccCCCCcHHHHhhcccc-----cchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHc------
Confidence 999999999999999999988542 122345678899999999988999999999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
+|++|||||||+|||+.++..+.++|++++++| +|||++|||++++..+|||+
T Consensus 158 -~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g----------~tiiivtHd~~~~~~~~d~i---------------- 210 (510)
T PRK15439 158 -DSRILILDEPTASLTPAETERLFSRIRELLAQG----------VGIVFISHKLPEIRQLADRI---------------- 210 (510)
T ss_pred -CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHhCCEE----------------
Confidence 699999999999999999999999999998776 59999999999999999988
Q ss_pred cCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 330 AVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.|+++++.
T Consensus 211 --------------~~l~~G~i~~~g~~~~~~ 228 (510)
T PRK15439 211 --------------SVMRDGTIALSGKTADLS 228 (510)
T ss_pred --------------EEEECCEEEEecChHHcC
Confidence 999999999999887764
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-49 Score=380.83 Aligned_cols=223 Identities=30% Similarity=0.463 Sum_probs=192.9
Q ss_pred cceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhcc
Q 016804 89 DVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~ 166 (382)
.++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... ... .+
T Consensus 5 ~~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~-~~~-~~ 82 (269)
T PRK13648 5 NSIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDN-FEK-LR 82 (269)
T ss_pred CceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCC-HHH-HH
Confidence 467999999999975 45999999999999999999999999999999999999999999999999875421 112 23
Q ss_pred ceEEEEecCCC-CCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCC
Q 016804 167 LRIGLVFQSAA-LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (382)
Q Consensus 167 ~~Ig~V~Q~~~-l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~ 245 (382)
.+|+|+||++. +|+..|+.+|+.+..... ....++..+++.++++.+++.++.++++.+||||||||++|||||+.
T Consensus 83 ~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~-- 159 (269)
T PRK13648 83 KHIGIVFQNPDNQFVGSIVKYDVAFGLENH-AVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLAL-- 159 (269)
T ss_pred hheeEEEeChHHhcccccHHHHHHhhHHhc-CCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHc--
Confidence 36999999985 677789999998865322 23444556678899999999999999999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchh
Q 016804 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDV 324 (382)
Q Consensus 246 ~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~ 324 (382)
+|++|||||||+|||+.++..+.+.|++++++ + .|+|++||+++++.. |||+
T Consensus 160 -----~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~----------~tiiivtH~~~~~~~-~d~i----------- 212 (269)
T PRK13648 160 -----NPSVIILDEATSMLDPDARQNLLDLVRKVKSEHN----------ITIISITHDLSEAME-ADHV----------- 212 (269)
T ss_pred -----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEecCchHHhc-CCEE-----------
Confidence 69999999999999999999999999999765 4 599999999999975 8877
Q ss_pred eehhccCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 325 VIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|++++.|+++++..
T Consensus 213 -------------------~~l~~G~i~~~g~~~~~~~ 231 (269)
T PRK13648 213 -------------------IVMNKGTVYKEGTPTEIFD 231 (269)
T ss_pred -------------------EEEECCEEEEecCHHHHhc
Confidence 9999999999998877643
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-49 Score=381.99 Aligned_cols=237 Identities=32% Similarity=0.518 Sum_probs=198.0
Q ss_pred CcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEECCCCCChh
Q 016804 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-----PDKGEVYIRGRKRAGLISDE 162 (382)
Q Consensus 88 ~~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~-----p~sG~I~i~G~~i~~~~~~~ 162 (382)
+.++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|+++.......
T Consensus 36 ~~~~l~i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~ 115 (285)
T PRK14254 36 GETVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDP 115 (285)
T ss_pred CCceEEEEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccch
Confidence 5578999999999998899999999999999999999999999999999999997 69999999999864311111
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc----ccccCCCCCCChHHHHHHHHH
Q 016804 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALA 238 (382)
Q Consensus 163 ~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~----~~~~~~~~~LSGGqrQRVaIA 238 (382)
...+.+++|+||++.+|+. |++||+.+..... +... ...+++.++++.+++. +..++++.+|||||||||+||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~-~~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LA 192 (285)
T PRK14254 116 VALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQ-GYDG-DIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIA 192 (285)
T ss_pred HhhhccEEEEecCCccCcC-CHHHHHHHHHHHc-CCcH-HHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHH
Confidence 1123469999999998885 9999998765322 2222 3456788999999984 457889999999999999999
Q ss_pred HHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccc
Q 016804 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQI 318 (382)
Q Consensus 239 rAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~ 318 (382)
|||+. +|+||||||||+|||+.++..+.++|++++++ .|+|++|||++++..+|||+
T Consensus 193 raL~~-------~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~-----------~tiii~tH~~~~i~~~~dri----- 249 (285)
T PRK14254 193 RAIAP-------DPEVILMDEPASALDPVATSKIEDLIEELAEE-----------YTVVIVTHNMQQAARISDKT----- 249 (285)
T ss_pred HHHHc-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC-----------CEEEEEeCCHHHHHhhcCEE-----
Confidence 99997 69999999999999999999999999999764 39999999999999999986
Q ss_pred cccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 319 FGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
+++|++|+|++.|++.++. .+.++.+..|+..
T Consensus 250 ------------------------~v~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 282 (285)
T PRK14254 250 ------------------------AVFLTGGELVEFDDTDKIFENPESQRVEDYITG 282 (285)
T ss_pred ------------------------EEEeeCCEEEEeCCHHHHHhCcCCHHHHHHhhh
Confidence 1467999999999888765 3455666666643
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-50 Score=421.37 Aligned_cols=285 Identities=29% Similarity=0.446 Sum_probs=223.2
Q ss_pred ccchhhHhHhhHHhhhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCC
Q 016804 6 SSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPE 85 (382)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (382)
+.....|++....+-..+..+++.. +-.-+.-..-+||.+.....|+-... .... |.
T Consensus 404 ~g~L~sFllY~~~~g~sl~~ls~~y-----s~lmkgvGAs~rvFel~dr~P~i~~~-G~~~-----------------p~ 460 (716)
T KOG0058|consen 404 SGALSSFLLYQVQLGSSLSGLSSFY-----SELMKGVGASERVFELMDRKPRIPLT-GTLA-----------------PD 460 (716)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhcchHHHHHHHhccCCCCCCC-Cccc-----------------cc
Confidence 3334445555555555555554444 44445556678899888887744433 1111 11
Q ss_pred CCCcceEEEEeEEEEeCCe---eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChh
Q 016804 86 DDGDVLIDCRNVYKSFGEK---HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE 162 (382)
Q Consensus 86 ~~~~~~I~~~nvs~~yg~~---~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~ 162 (382)
.-.-.|+++||+|+|+.+ ++|+|+||+|++||++|||||||+||||+.++|..||+|++|+|.+||+|+.++...
T Consensus 461 -~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~- 538 (716)
T KOG0058|consen 461 -HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHK- 538 (716)
T ss_pred -cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHH-
Confidence 112249999999999764 599999999999999999999999999999999999999999999999999876433
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChHH
Q 016804 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGM 231 (382)
Q Consensus 163 ~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGGq 231 (382)
+.+ ++||+|.|+|.||. -||+|||.|+.. ..+ ++++..+.++.+.+++....| .+|||||
T Consensus 539 ~lr-~~Ig~V~QEPvLFs-~sI~eNI~YG~~---~~t----~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQ 609 (716)
T KOG0058|consen 539 YLR-RKIGLVGQEPVLFS-GSIRENIAYGLD---NAT----DEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQ 609 (716)
T ss_pred HHH-HHeeeeeccceeec-ccHHHHHhcCCC---CCC----HHHHHHHHHHhChHHHHHhCccccccccCCccccccchH
Confidence 333 47999999999997 599999999763 233 344666777777776666555 5999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhc
Q 016804 232 KKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVD 311 (382)
Q Consensus 232 rQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aD 311 (382)
|||+||||||++ +|.||||||.||+||.+++..+++.|.++.++ +|+|+|+|+++++++ ||
T Consensus 610 KQRIAIARALlr-------~P~VLILDEATSALDaeSE~lVq~aL~~~~~~-----------rTVlvIAHRLSTV~~-Ad 670 (716)
T KOG0058|consen 610 KQRIAIARALLR-------NPRVLILDEATSALDAESEYLVQEALDRLMQG-----------RTVLVIAHRLSTVRH-AD 670 (716)
T ss_pred HHHHHHHHHHhc-------CCCEEEEechhhhcchhhHHHHHHHHHHhhcC-----------CeEEEEehhhhHhhh-cc
Confidence 999999999998 59999999999999999999999999998765 499999999999987 55
Q ss_pred hhccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHHc
Q 016804 312 RLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFAS 373 (382)
Q Consensus 312 rv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 373 (382)
+|+|+++|+|++.|+.+|++...+....++.+
T Consensus 671 ------------------------------~Ivvi~~G~V~E~G~h~eLl~~~~gly~~Lv~ 702 (716)
T KOG0058|consen 671 ------------------------------QIVVIDKGRVVEMGTHDELLSKPNGLYAKLVQ 702 (716)
T ss_pred ------------------------------EEEEEcCCeEEecccHHHHhhCcccHHHHHHH
Confidence 45999999999999777777666555555554
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-49 Score=378.69 Aligned_cols=235 Identities=29% Similarity=0.445 Sum_probs=195.8
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEECCCCCChhh
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-----PDKGEVYIRGRKRAGLISDEE 163 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~-----p~sG~I~i~G~~i~~~~~~~~ 163 (382)
.++|+++||+++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|+++........
T Consensus 8 ~~~l~i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 8 ETVLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred ceEEEEeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 458999999999998899999999999999999999999999999999999986 489999999998642111111
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc----ccccCCCCCCChHHHHHHHHHH
Q 016804 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALAR 239 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~----~~~~~~~~~LSGGqrQRVaIAr 239 (382)
..+.+|+|+||++.+|+ .|++||+.++.... +.. ....+++.++++.+++. +..++.+.+||||||||++|||
T Consensus 88 ~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~-~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~lar 164 (264)
T PRK14243 88 EVRRRIGMVFQKPNPFP-KSIYDNIAYGARIN-GYK-GDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIAR 164 (264)
T ss_pred HHhhhEEEEccCCcccc-ccHHHHHHhhhhhc-Ccc-hHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHH
Confidence 12336999999999988 59999998865321 121 22345567778888874 3567889999999999999999
Q ss_pred HHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccc
Q 016804 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIF 319 (382)
Q Consensus 240 AL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~ 319 (382)
||+. +|++|||||||+|||+.++..+.++|+++.++ .|||++||+++++.++|||+
T Consensus 165 al~~-------~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~-----------~tvi~vtH~~~~~~~~~d~v------ 220 (264)
T PRK14243 165 AIAV-------QPEVILMDEPCSALDPISTLRIEELMHELKEQ-----------YTIIIVTHNMQQAARVSDMT------ 220 (264)
T ss_pred HHhc-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHhcC-----------CEEEEEecCHHHHHHhCCEE------
Confidence 9997 69999999999999999999999999999753 49999999999999999988
Q ss_pred ccchheehhccCCCCcccccccEEEEEe---------CCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 320 GHIDVVIILGAVAPDKEVFFIYRLIFLY---------EGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~ii~l~---------~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
++|+ +|++++.|++.++. .+.++.+.+++.+
T Consensus 221 ------------------------~~l~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~ 261 (264)
T PRK14243 221 ------------------------AFFNVELTEGGGRYGYLVEFDRTEKIFNSPQQQATRDYVSG 261 (264)
T ss_pred ------------------------EEEecccccccccCceEEEeCCHHHHHhCCCcHHHHHHhhh
Confidence 8888 89999999888875 4566777776654
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-49 Score=410.78 Aligned_cols=239 Identities=32% Similarity=0.546 Sum_probs=211.7
Q ss_pred ceEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC----ccEEEECCEECCCCCCh
Q 016804 90 VLIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD----KGEVYIRGRKRAGLISD 161 (382)
Q Consensus 90 ~~I~~~nvs~~yg~----~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~----sG~I~i~G~~i~~~~~~ 161 (382)
++|+++||++.|.. .++++||||+|.+||++||||.|||||||+.+.|+|++++. +|+|.++|+++..+...
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~ 83 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER 83 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence 47999999999953 26999999999999999999999999999999999999987 89999999988776443
Q ss_pred hh--hccceEEEEecCC--CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCccccc--CCCCCCChHHHHHH
Q 016804 162 EE--ISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVED--RLPSELSGGMKKRV 235 (382)
Q Consensus 162 ~~--~~~~~Ig~V~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~--~~~~~LSGGqrQRV 235 (382)
.. .++.+|+||||+| .|.|.+||.+.|.-.+..+.....++.++++.++|+.+||.+... +||++|||||||||
T Consensus 84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv 163 (539)
T COG1123 84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRV 163 (539)
T ss_pred HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHH
Confidence 22 2344699999997 477779999999887766665667888899999999999976544 59999999999999
Q ss_pred HHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcc
Q 016804 236 ALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCL 315 (382)
Q Consensus 236 aIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~ 315 (382)
.||+||++ +|++||+||||++||+..+.+++++|+++.++.+ +++|+||||+..+.++||||
T Consensus 164 ~iAmALa~-------~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g---------~a~l~ITHDl~Vva~~aDrv-- 225 (539)
T COG1123 164 MIAMALAL-------KPKLLIADEPTTALDVTTQAQILDLLKDLQRELG---------MAVLFITHDLGVVAELADRV-- 225 (539)
T ss_pred HHHHHHhC-------CCCEEEECCCccccCHHHHHHHHHHHHHHHHHcC---------cEEEEEcCCHHHHHHhcCeE--
Confidence 99999997 6999999999999999999999999999987642 79999999999999999988
Q ss_pred ccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 316 FQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
+||++|++++.|++++++ ++.||+++.+...
T Consensus 226 ----------------------------~Vm~~G~iVE~G~~~~i~~~p~hpYT~~Ll~a 257 (539)
T COG1123 226 ----------------------------VVMYKGEIVETGPTEEILSNPQHPYTRGLLAA 257 (539)
T ss_pred ----------------------------EEEECCEEEEecCHHHHHhccCCcccHHHHhh
Confidence 999999999999999976 6789999987653
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-49 Score=383.94 Aligned_cols=222 Identities=31% Similarity=0.455 Sum_probs=189.2
Q ss_pred eEEEEeEEEEeCCe-----eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCC---CChh
Q 016804 91 LIDCRNVYKSFGEK-----HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGL---ISDE 162 (382)
Q Consensus 91 ~I~~~nvs~~yg~~-----~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~---~~~~ 162 (382)
.|+++||+++|+++ .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... ....
T Consensus 6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 85 (289)
T PRK13645 6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEV 85 (289)
T ss_pred eEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccH
Confidence 48999999999764 499999999999999999999999999999999999999999999999986421 0011
Q ss_pred hhccceEEEEecCC--CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHHHH
Q 016804 163 EISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALAR 239 (382)
Q Consensus 163 ~~~~~~Ig~V~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaIAr 239 (382)
...+.+|+|++|++ .+++ .|++||+.++... .+...++..+++.++++.++|. ++.++++.+||||||||++|||
T Consensus 86 ~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~-~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~lar 163 (289)
T PRK13645 86 KRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVN-LGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAG 163 (289)
T ss_pred HHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHH
Confidence 11233699999997 3555 6999999886532 2234445556778899999994 6889999999999999999999
Q ss_pred HHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccc
Q 016804 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQI 318 (382)
Q Consensus 240 AL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~ 318 (382)
||+. +|++|||||||+|||+.++..+.++|+++.++ + +|+|++||+++++.++|||+
T Consensus 164 al~~-------~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tiiiisH~~~~~~~~~d~i----- 221 (289)
T PRK13645 164 IIAM-------DGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYK----------KRIIMVTHNMDQVLRIADEV----- 221 (289)
T ss_pred HHHh-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEecCHHHHHHhCCEE-----
Confidence 9997 69999999999999999999999999999764 4 59999999999999999988
Q ss_pred cccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 319 FGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.|+++++.
T Consensus 222 -------------------------~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 222 -------------------------IVMHEGKVISIGSPFEIF 239 (289)
T ss_pred -------------------------EEEECCEEEEeCCHHHHh
Confidence 999999999999877754
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-49 Score=368.50 Aligned_cols=210 Identities=30% Similarity=0.566 Sum_probs=186.8
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
|+++||+++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... . ...++|
T Consensus 1 l~l~~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~----~--~~~~~~ 74 (223)
T TIGR03740 1 LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRK----D--LHKIGS 74 (223)
T ss_pred CEEEeEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccc----c--cccEEE
Confidence 4789999999988999999999999999999999999999999999999999999999999875321 1 126999
Q ss_pred EecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCC
Q 016804 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~ 251 (382)
+||++.+|+.+|++||+.+..... +.. .+++.++++.+|+++..++.+.+||||||||++|||||+. +
T Consensus 75 ~~q~~~~~~~~t~~~~~~~~~~~~-~~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~-------~ 142 (223)
T TIGR03740 75 LIESPPLYENLTARENLKVHTTLL-GLP----DSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLN-------H 142 (223)
T ss_pred EcCCCCccccCCHHHHHHHHHHHc-CCC----HHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhc-------C
Confidence 999999998899999998764322 222 2356788999999998999999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccC
Q 016804 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAV 331 (382)
Q Consensus 252 P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~ 331 (382)
|++|||||||+|||+.++..+.++|+++++++ .|+|++|||++++.++|||+
T Consensus 143 p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~----------~tiii~sH~~~~~~~~~d~i------------------ 194 (223)
T TIGR03740 143 PKLLILDEPTNGLDPIGIQELRELIRSFPEQG----------ITVILSSHILSEVQQLADHI------------------ 194 (223)
T ss_pred CCEEEECCCccCCCHHHHHHHHHHHHHHHHCC----------CEEEEEcCCHHHHHHhcCEE------------------
Confidence 99999999999999999999999999997665 59999999999999999988
Q ss_pred CCCcccccccEEEEEeCCeEEEEecccc
Q 016804 332 APDKEVFFIYRLIFLYEGKIVWQGMTHE 359 (382)
Q Consensus 332 ~~~~~~~~~~~ii~l~~G~i~~~g~~~~ 359 (382)
++|++|++++.|++.+
T Consensus 195 ------------~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 195 ------------GIISEGVLGYQGKINK 210 (223)
T ss_pred ------------EEEeCCEEEEecChhh
Confidence 9999999999997653
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-49 Score=425.38 Aligned_cols=279 Identities=28% Similarity=0.419 Sum_probs=219.8
Q ss_pred cchhhHhHhhHHhhhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCC
Q 016804 7 SGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPED 86 (382)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (382)
...+.+...+..+++++..+.+.. .....+....+|+......|....... . .+.
T Consensus 392 G~lva~~~l~~~~~~pl~~l~~~~-----~~~~~~~~~~~ri~~~l~~~~e~~~~~-~-------------------~~~ 446 (686)
T TIGR03797 392 GSFLAFNTAFGSFSGAVTQLSNTL-----ISILAVIPLWERAKPILEALPEVDEAK-T-------------------DPG 446 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhcCCcccccCc-C-------------------CCC
Confidence 444455555566677777776666 667788888899998877664211000 0 000
Q ss_pred CCcceEEEEeEEEEeC--CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhh
Q 016804 87 DGDVLIDCRNVYKSFG--EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEI 164 (382)
Q Consensus 87 ~~~~~I~~~nvs~~yg--~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~ 164 (382)
.....|+++||+|+|+ ++++|+|+||+|++||.+||+||||||||||+|+|+|+++|++|+|++||+++..+.... .
T Consensus 447 ~~~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~-l 525 (686)
T TIGR03797 447 KLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQA-V 525 (686)
T ss_pred CCCceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHH-H
Confidence 1112499999999995 357999999999999999999999999999999999999999999999999987754333 2
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChHHHH
Q 016804 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKK 233 (382)
Q Consensus 165 ~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGGqrQ 233 (382)
+.+||||+|++.+|+. |++|||.++. . .+ ++++.++++.++++++.++.| ..|||||||
T Consensus 526 -r~~i~~v~Q~~~lf~g-TI~eNi~~~~---~-~~----~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQ 595 (686)
T TIGR03797 526 -RRQLGVVLQNGRLMSG-SIFENIAGGA---P-LT----LDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQ 595 (686)
T ss_pred -HhccEEEccCCccCcc-cHHHHHhcCC---C-CC----HHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHH
Confidence 3369999999999985 9999998742 1 22 344678899999887666554 579999999
Q ss_pred HHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 234 RVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 234 RVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
|++|||||++ +|++||||||||+||+.+++.+++.|+++ + +|+|+|||+++.+.. ||||
T Consensus 596 RialARAll~-------~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~----------~T~IiItHr~~~i~~-~D~I 654 (686)
T TIGR03797 596 RLLIARALVR-------KPRILLFDEATSALDNRTQAIVSESLERL---K----------VTRIVIAHRLSTIRN-ADRI 654 (686)
T ss_pred HHHHHHHHhc-------CCCEEEEeCCccCCCHHHHHHHHHHHHHh---C----------CeEEEEecChHHHHc-CCEE
Confidence 9999999997 59999999999999999999999999876 3 499999999999865 7766
Q ss_pred ccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHHc
Q 016804 314 CLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFAS 373 (382)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 373 (382)
++|++|+|+++|+.+++... ++...+++.
T Consensus 655 ------------------------------ivl~~G~iv~~G~~~~Ll~~-~~~y~~l~~ 683 (686)
T TIGR03797 655 ------------------------------YVLDAGRVVQQGTYDELMAR-EGLFAQLAR 683 (686)
T ss_pred ------------------------------EEEECCEEEEECCHHHHHhC-CcHHHHHHH
Confidence 99999999999977777654 444455443
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-49 Score=374.34 Aligned_cols=231 Identities=31% Similarity=0.508 Sum_probs=192.4
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEECCCCCChhhhcc
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-----PDKGEVYIRGRKRAGLISDEEISG 166 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~-----p~sG~I~i~G~~i~~~~~~~~~~~ 166 (382)
-+++||+++|+++++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|+++|+++..........+
T Consensus 6 ~~~~~l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 85 (251)
T PRK14244 6 ASVKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLR 85 (251)
T ss_pred EEeeeEEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHh
Confidence 468999999998899999999999999999999999999999999999986 479999999998643211111123
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhHhhcCC-CCHHHHHHHHHHHHHHcCCcc----cccCCCCCCChHHHHHHHHHHHH
Q 016804 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSK-MRDEQISELVKENLAAVGLKG----VEDRLPSELSGGMKKRVALARSI 241 (382)
Q Consensus 167 ~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~-~~~~~~~~~v~~~L~~~gL~~----~~~~~~~~LSGGqrQRVaIArAL 241 (382)
.+++|+||++.+|+. |++||+.+....... ......++.+.++++.+|+.+ ..++.+.+||||||||++|||||
T Consensus 86 ~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral 164 (251)
T PRK14244 86 AKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAI 164 (251)
T ss_pred hhEEEEecCcccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHH
Confidence 369999999999985 999999876422211 123344566788999999964 46788999999999999999999
Q ss_pred hcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccccc
Q 016804 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGH 321 (382)
Q Consensus 242 ~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~ 321 (382)
+. +|++|||||||+|||+.++..+.+.|+++.+ + .|+|++|||++++.++|||+
T Consensus 165 ~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~----------~tiiiisH~~~~~~~~~d~i-------- 218 (251)
T PRK14244 165 AV-------KPTMLLMDEPCSALDPVATNVIENLIQELKK-N----------FTIIVVTHSMKQAKKVSDRV-------- 218 (251)
T ss_pred hc-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-C----------CeEEEEeCCHHHHHhhcCEE--------
Confidence 97 6999999999999999999999999999954 4 59999999999999999988
Q ss_pred chheehhccCCCCcccccccEEEEEeCCeEEEEeccccccc-CCCHHHHHH
Q 016804 322 IDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQF 371 (382)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~-~~~~~~~~~ 371 (382)
++|++|++++.|++.++.. +.++.+.++
T Consensus 219 ----------------------~~l~~G~i~~~~~~~~~~~~~~~~~~~~~ 247 (251)
T PRK14244 219 ----------------------AFFQSGRIVEYNTTQEIFKNPQSSKTKRY 247 (251)
T ss_pred ----------------------EEEECCEEEEeCCHHHHhcCCCChHHHHh
Confidence 9999999999998888753 345555554
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-49 Score=370.63 Aligned_cols=230 Identities=39% Similarity=0.638 Sum_probs=199.6
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
|+++|++++|+++++|+|+||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ..+..++|
T Consensus 1 i~i~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~----~~~~~i~~ 76 (237)
T TIGR00968 1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVH----ARDRKIGF 76 (237)
T ss_pred CEEEEEEEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCC----hhhcCEEE
Confidence 47899999999889999999999999999999999999999999999999999999999999875321 12336999
Q ss_pred EecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCC
Q 016804 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~ 251 (382)
+||++.+|+.+|+.||+.+..... +.......+.+.++++.+++.+..++.+.+||+||+||++|||||+. +
T Consensus 77 ~~q~~~~~~~~t~~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~-------~ 148 (237)
T TIGR00968 77 VFQHYALFKHLTVRDNIAFGLEIR-KHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAV-------E 148 (237)
T ss_pred EecChhhccCCcHHHHHHhHHHhc-CCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhc-------C
Confidence 999999999899999998765322 23334445667889999999988999999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhcc
Q 016804 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGA 330 (382)
Q Consensus 252 P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~ 330 (382)
|+++||||||+|||+.++..+.++|++++++ + .|+|++||+++++.++|||+
T Consensus 149 p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~----------~tvli~sH~~~~~~~~~d~i----------------- 201 (237)
T TIGR00968 149 PQVLLLDEPFGALDAKVRKELRSWLRKLHDEVH----------VTTVFVTHDQEEAMEVADRI----------------- 201 (237)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHhhcCEE-----------------
Confidence 9999999999999999999999999999875 4 59999999999999999988
Q ss_pred CCCCcccccccEEEEEeCCeEEEEeccccccc-CCCHHHHHHHc
Q 016804 331 VAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFAS 373 (382)
Q Consensus 331 ~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~ 373 (382)
++|++|++++.|+.+++.. +.++.+..+..
T Consensus 202 -------------~~l~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 232 (237)
T TIGR00968 202 -------------VVMSNGKIEQIGSPDEVYDHPANPFVMSFLG 232 (237)
T ss_pred -------------EEEECCEEEEecCHHHHHcCCCcHHHHHhcc
Confidence 9999999999998777653 34566665543
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-49 Score=380.99 Aligned_cols=222 Identities=32% Similarity=0.501 Sum_probs=192.3
Q ss_pred ceEEEEeEEEEeCC---eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhcc
Q 016804 90 VLIDCRNVYKSFGE---KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (382)
Q Consensus 90 ~~I~~~nvs~~yg~---~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~ 166 (382)
++|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... .... .+
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~-~~~~-~~ 80 (277)
T PRK13642 3 KILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAE-NVWN-LR 80 (277)
T ss_pred ceEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcC-CHHH-Hh
Confidence 36999999999974 3599999999999999999999999999999999999999999999999987542 1122 23
Q ss_pred ceEEEEecCCC-CCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCC
Q 016804 167 LRIGLVFQSAA-LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (382)
Q Consensus 167 ~~Ig~V~Q~~~-l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~ 245 (382)
.+|||+||++. +++..||.||+.++... .+...++..+++.++++.+||.++.++++.+||||||||++|||||+.
T Consensus 81 ~~i~~v~q~~~~~~~~~tv~eni~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~-- 157 (277)
T PRK13642 81 RKIGMVFQNPDNQFVGATVEDDVAFGMEN-QGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIAL-- 157 (277)
T ss_pred cceEEEEECHHHhhccCCHHHHHHhhHHH-cCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHc--
Confidence 46999999984 56668999999876432 223445556678899999999999999999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchh
Q 016804 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDV 324 (382)
Q Consensus 246 ~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~ 324 (382)
+|++|||||||++||+.++..+.++|++++++ | .|+|++|||++++. .|||+
T Consensus 158 -----~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g----------~tiil~sH~~~~~~-~~d~i----------- 210 (277)
T PRK13642 158 -----RPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQ----------LTVLSITHDLDEAA-SSDRI----------- 210 (277)
T ss_pred -----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHH-hCCEE-----------
Confidence 69999999999999999999999999999875 5 59999999999997 58877
Q ss_pred eehhccCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 325 VIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|++++.|+++++..
T Consensus 211 -------------------~~l~~G~i~~~g~~~~~~~ 229 (277)
T PRK13642 211 -------------------LVMKAGEIIKEAAPSELFA 229 (277)
T ss_pred -------------------EEEECCEEEEeCCHHHHhc
Confidence 9999999999998877653
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-49 Score=375.27 Aligned_cols=237 Identities=29% Similarity=0.434 Sum_probs=197.5
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC-----ccEEEECCEECCCCCChhhh
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD-----KGEVYIRGRKRAGLISDEEI 164 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~-----sG~I~i~G~~i~~~~~~~~~ 164 (382)
++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.........
T Consensus 6 ~~l~~~nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~ 85 (261)
T PRK14258 6 PAIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNR 85 (261)
T ss_pred ceEEEeeEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHH
Confidence 3699999999998888999999999999999999999999999999999999986 89999999986321111111
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCC-CHHHHHHHHHHHHHHcCCcc----cccCCCCCCChHHHHHHHHHH
Q 016804 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKM-RDEQISELVKENLAAVGLKG----VEDRLPSELSGGMKKRVALAR 239 (382)
Q Consensus 165 ~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~-~~~~~~~~v~~~L~~~gL~~----~~~~~~~~LSGGqrQRVaIAr 239 (382)
.+..++|+||++.+|+ +|++||+.+..... +. ...+..+++.++++.+++.+ ..++.+.+||||||||++|||
T Consensus 86 ~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lar 163 (261)
T PRK14258 86 LRRQVSMVHPKPNLFP-MSVYDNVAYGVKIV-GWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIAR 163 (261)
T ss_pred hhccEEEEecCCccCc-ccHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHH
Confidence 2336999999999998 89999998764221 22 23344566788999998843 568889999999999999999
Q ss_pred HHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccc
Q 016804 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQI 318 (382)
Q Consensus 240 AL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~ 318 (382)
||+. +|++|||||||++||+.++..+.+.|++++++ + .|+|++|||++++.++|||+
T Consensus 164 al~~-------~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~----------~tiiivsH~~~~i~~~~d~i----- 221 (261)
T PRK14258 164 ALAV-------KPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSE----------LTMVIVSHNLHQVSRLSDFT----- 221 (261)
T ss_pred HHhc-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCC----------CEEEEEECCHHHHHHhcCEE-----
Confidence 9997 69999999999999999999999999998754 4 59999999999999999988
Q ss_pred cccchheehhccCCCCcccccccEEEEEeC-----CeEEEEeccccccc-CCCHHHHHHHcCC
Q 016804 319 FGHIDVVIILGAVAPDKEVFFIYRLIFLYE-----GKIVWQGMTHEFTS-SSNPIVQQFASGS 375 (382)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~-----G~i~~~g~~~~~~~-~~~~~~~~~~~~~ 375 (382)
++|++ |+++..|+++++.. +......+|...+
T Consensus 222 -------------------------~~l~~~~~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (261)
T PRK14258 222 -------------------------AFFKGNENRIGQLVEFGLTKKIFNSPHDSRTREYVLSR 259 (261)
T ss_pred -------------------------EEEccCCCcCceEEEeCCHHHHHhCCCCHHHHHHHHhc
Confidence 99999 99999998888753 3455566665543
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-49 Score=376.34 Aligned_cols=239 Identities=29% Similarity=0.547 Sum_probs=201.4
Q ss_pred CcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCE------ECCCCCCh
Q 016804 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGR------KRAGLISD 161 (382)
Q Consensus 88 ~~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~------~i~~~~~~ 161 (382)
..++|+++|++|+|+++.+|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|. ++... ..
T Consensus 7 ~~~~i~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~-~~ 85 (257)
T PRK14246 7 AEDVFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQI-DA 85 (257)
T ss_pred hhhheeeeeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccC-CH
Confidence 347899999999999999999999999999999999999999999999999999999987777763 33221 11
Q ss_pred hhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc----ccccCCCCCCChHHHHHHHH
Q 016804 162 EEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVAL 237 (382)
Q Consensus 162 ~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~----~~~~~~~~~LSGGqrQRVaI 237 (382)
.. .+.+++|+||++.+|+.+|+++|+.++........+++..+++.++++.+++. +..++.+..||+|||||++|
T Consensus 86 ~~-~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~l 164 (257)
T PRK14246 86 IK-LRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTI 164 (257)
T ss_pred HH-HhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHH
Confidence 11 13369999999999988999999988653221123345556788999999996 35688999999999999999
Q ss_pred HHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccc
Q 016804 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQ 317 (382)
Q Consensus 238 ArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~ 317 (382)
||||+. +|++|||||||+|||+.++..+.+.|.++++ + .|+|++||+++++.++|||+
T Consensus 165 aral~~-------~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~----------~tiilvsh~~~~~~~~~d~v---- 222 (257)
T PRK14246 165 ARALAL-------KPKVLLMDEPTSMIDIVNSQAIEKLITELKN-E----------IAIVIVSHNPQQVARVADYV---- 222 (257)
T ss_pred HHHHHc-------CCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-C----------cEEEEEECCHHHHHHhCCEE----
Confidence 999997 6999999999999999999999999999965 3 49999999999999999988
Q ss_pred ccccchheehhccCCCCcccccccEEEEEeCCeEEEEeccccccc-CCCHHHHHHHcCCC
Q 016804 318 IFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFASGSL 376 (382)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~~~~ 376 (382)
++|++|+++..|+.+++.. +.++.++.|..|.+
T Consensus 223 --------------------------~~l~~g~i~~~g~~~~~~~~~~~~~~~~~~~~~~ 256 (257)
T PRK14246 223 --------------------------AFLYNGELVEWGSSNEIFTSPKNELTEKYVIGRI 256 (257)
T ss_pred --------------------------EEEECCEEEEECCHHHHHhCCCcHHHHHHhhccC
Confidence 9999999999998888754 56678888777654
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-49 Score=388.90 Aligned_cols=237 Identities=33% Similarity=0.542 Sum_probs=199.2
Q ss_pred ceEEEEeEEEEeC--CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEECCCCCChh
Q 016804 90 VLIDCRNVYKSFG--EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-----PDKGEVYIRGRKRAGLISDE 162 (382)
Q Consensus 90 ~~I~~~nvs~~yg--~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~-----p~sG~I~i~G~~i~~~~~~~ 162 (382)
.+|+++|++++|. .+++|+|+||+|++||++||+||||||||||+++|+|+.+ |++|+|.++|+++.......
T Consensus 79 ~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~ 158 (329)
T PRK14257 79 NVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISS 158 (329)
T ss_pred ceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 4799999999995 3579999999999999999999999999999999999986 57999999999975321111
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCC-HHHHHHHHHHHHHHcCCc----ccccCCCCCCChHHHHHHHH
Q 016804 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMR-DEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVAL 237 (382)
Q Consensus 163 ~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~-~~~~~~~v~~~L~~~gL~----~~~~~~~~~LSGGqrQRVaI 237 (382)
...+.+++||||++.+|+ .|++||+.|+.... +.. .+..++.+.++++.++|. ...++++.+||||||||++|
T Consensus 159 ~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~-~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~L 236 (329)
T PRK14257 159 LELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN-GINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCI 236 (329)
T ss_pred HhhhccEEEEecCCccCC-CcHHHHHHhHHHhc-CCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHH
Confidence 112336999999999996 79999999865321 222 233344567889998873 35678899999999999999
Q ss_pred HHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccc
Q 016804 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQ 317 (382)
Q Consensus 238 ArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~ 317 (382)
||||+. +|+||||||||++||+.+...+.+.|+++.++ .|+|+|||+++++.++||||
T Consensus 237 ARAl~~-------~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~-----------~Tii~iTH~l~~i~~~~Dri---- 294 (329)
T PRK14257 237 ARAIAL-------EPEVLLMDEPTSALDPIATAKIEELILELKKK-----------YSIIIVTHSMAQAQRISDET---- 294 (329)
T ss_pred HHHHHh-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHhcC-----------CEEEEEeCCHHHHHHhCCEE----
Confidence 999997 69999999999999999999999999999763 49999999999999999988
Q ss_pred ccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcCCC
Q 016804 318 IFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASGSL 376 (382)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~~~ 376 (382)
++|++|+|++.|++.++. .+.++.+.+++.|..
T Consensus 295 --------------------------ivl~~G~i~e~g~~~~l~~~~~~~~~~~~~~~~~ 328 (329)
T PRK14257 295 --------------------------VFFYQGWIEEAGETKTIFIHPKNKRTKDYISGKI 328 (329)
T ss_pred --------------------------EEEECCEEEEeCCHHHHhcCCCcHHHHHHhcccc
Confidence 999999999999999965 567788888887653
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-49 Score=382.03 Aligned_cols=230 Identities=27% Similarity=0.371 Sum_probs=192.1
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC--------ccEEEECCEECCCCCChh
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD--------KGEVYIRGRKRAGLISDE 162 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~--------sG~I~i~G~~i~~~~~~~ 162 (382)
||+++|++++|+++.+|+++||+|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.++.... ..
T Consensus 1 ml~~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~-~~ 79 (272)
T PRK13547 1 MLTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAID-AP 79 (272)
T ss_pred CeEEEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCC-HH
Confidence 589999999999889999999999999999999999999999999999999998 999999999875421 22
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhHhhcC---CCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHH
Q 016804 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENS---KMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALAR 239 (382)
Q Consensus 163 ~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~---~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIAr 239 (382)
.. +..++|+||++.+++.+|++||+.+...... .....+..+.+.++++.+|+.+..++++.+|||||||||+|||
T Consensus 80 ~~-~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lar 158 (272)
T PRK13547 80 RL-ARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFAR 158 (272)
T ss_pred HH-HhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHH
Confidence 22 2258999999876556899999987542111 1111234556788999999998899999999999999999999
Q ss_pred HHhcC--CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccc
Q 016804 240 SIIFD--NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLF 316 (382)
Q Consensus 240 AL~~~--~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~ 316 (382)
||+.. +..-+.+|++|||||||++||+.++..+.++|+++.++ + .|+|++|||++++.++|||+
T Consensus 159 al~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tviiisH~~~~~~~~~d~i--- 225 (272)
T PRK13547 159 VLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWN----------LGVLAIVHDPNLAARHADRI--- 225 (272)
T ss_pred HHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEECCHHHHHHhCCEE---
Confidence 99930 00000259999999999999999999999999999875 5 59999999999999999988
Q ss_pred cccccchheehhccCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 317 QIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|++++.|+++++..
T Consensus 226 ---------------------------~~l~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 226 ---------------------------AMLADGAIVAHGAPADVLT 244 (272)
T ss_pred ---------------------------EEEECCeEEEecCHHHHcC
Confidence 9999999999998877754
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-49 Score=417.62 Aligned_cols=282 Identities=29% Similarity=0.449 Sum_probs=225.8
Q ss_pred ccchhhHhHhhHHhhhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCC
Q 016804 6 SSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPE 85 (382)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (382)
......++.....++.++..++... ..........+|+.+....|+.-...... ...
T Consensus 268 ~g~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~a~~ri~~~l~~~~~~~~~~~~------------------~~~ 324 (567)
T COG1132 268 VGALAAFILYLLRLLTPILQLGEVV-----SLLQRASAAAERLFELLDEEPEVEDPPDP------------------LKD 324 (567)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCccccCCCCC------------------CCC
Confidence 3455667777777788888877777 77778888999999999886531111100 011
Q ss_pred CCCcceEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhh
Q 016804 86 DDGDVLIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEI 164 (382)
Q Consensus 86 ~~~~~~I~~~nvs~~yg-~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~ 164 (382)
..+ -|+++||+|+|+ ++++|+|+||++++||.+|||||||||||||+++|+|+++|++|+|++||+|+........
T Consensus 325 ~~~--~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~l- 401 (567)
T COG1132 325 TIG--SIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSL- 401 (567)
T ss_pred CCC--eEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHH-
Confidence 122 299999999998 6899999999999999999999999999999999999999999999999999987643333
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCC-----------CCCCChHHHH
Q 016804 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL-----------PSELSGGMKK 233 (382)
Q Consensus 165 ~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~-----------~~~LSGGqrQ 233 (382)
+.+|+||||++.||. .||+|||.++.. ..++ +++.++++.++++++..+. ...|||||||
T Consensus 402 -r~~I~~V~Qd~~LF~-~TI~~NI~~g~~---~at~----eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQ 472 (567)
T COG1132 402 -RKRIGIVSQDPLLFS-GTIRENIALGRP---DATD----EEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQ 472 (567)
T ss_pred -HHhccEEcccceeec-ccHHHHHhcCCC---CCCH----HHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHH
Confidence 336999999999998 699999998642 1233 3455666666665544443 3689999999
Q ss_pred HHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 234 RVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 234 RVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
|++|||||++ +|+|||||||||+||+.++..+++.+.++. ++ +|+|+|+|+++++.+ ||+|
T Consensus 473 rlaiARall~-------~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~----------rT~iiIaHRlsti~~-aD~I 533 (567)
T COG1132 473 RLAIARALLR-------NPPILILDEATSALDTETEALIQDALKKLL-KG----------RTTLIIAHRLSTIKN-ADRI 533 (567)
T ss_pred HHHHHHHHhc-------CCCEEEEeccccccCHHhHHHHHHHHHHHh-cC----------CEEEEEeccHhHHHh-CCEE
Confidence 9999999998 599999999999999999999999999887 43 489999999999988 7766
Q ss_pred ccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHH
Q 016804 314 CLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFA 372 (382)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 372 (382)
+||++|+|++.|+.+|+... +....++.
T Consensus 534 ------------------------------iVl~~G~i~e~G~h~eLl~~-~g~y~~l~ 561 (567)
T COG1132 534 ------------------------------IVLDNGRIVERGTHEELLAK-GGLYARLY 561 (567)
T ss_pred ------------------------------EEEECCEEEEecCHHHHHHc-CCHHHHHH
Confidence 99999999999988787755 44545444
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-49 Score=369.52 Aligned_cols=218 Identities=31% Similarity=0.544 Sum_probs=192.1
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
|+++|++++|++. +|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|+++|.++.... . .+.+++|
T Consensus 1 l~~~~l~~~~~~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~-~---~~~~i~~ 75 (235)
T cd03299 1 LKVENLSKDWKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLP-P---EKRDISY 75 (235)
T ss_pred CeeEeEEEEeCCc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCC-h---hHcCEEE
Confidence 4689999999864 899999999999999999999999999999999999999999999999875421 1 1236999
Q ss_pred EecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCC
Q 016804 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~ 251 (382)
+||++.+|+.+|+.||+.+.... .+....+..+.+.++++.+||.+..++++.+||||||||++|||||+. +
T Consensus 76 ~~q~~~~~~~~t~~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~-------~ 147 (235)
T cd03299 76 VPQNYALFPHMTVYKNIAYGLKK-RKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVV-------N 147 (235)
T ss_pred EeecCccCCCccHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHc-------C
Confidence 99999999889999999876432 223344556677889999999999999999999999999999999997 5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhcc
Q 016804 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGA 330 (382)
Q Consensus 252 P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~ 330 (382)
|+++||||||+|||+.++..+.+.|+++.++ + .|+|++||+++++.++|||+
T Consensus 148 p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~----------~tili~tH~~~~~~~~~d~i----------------- 200 (235)
T cd03299 148 PKILLLDEPFSALDVRTKEKLREELKKIRKEFG----------VTVLHVTHDFEEAWALADKV----------------- 200 (235)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEecCHHHHHHhCCEE-----------------
Confidence 9999999999999999999999999999765 5 59999999999999999988
Q ss_pred CCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 331 VAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 331 ~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|++++.|+.+++..
T Consensus 201 -------------~~l~~G~i~~~~~~~~~~~ 219 (235)
T cd03299 201 -------------AIMLNGKLIQVGKPEEVFK 219 (235)
T ss_pred -------------EEEECCEEEEecCHHHHHh
Confidence 9999999999997766643
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-49 Score=409.16 Aligned_cols=281 Identities=26% Similarity=0.386 Sum_probs=220.8
Q ss_pred ccccchhhHhHhhHHhhhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCC
Q 016804 4 LSSSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFE 83 (382)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (382)
++....+++++++--+|.|+-.+++.. +--...+...+++......|....+...-. .
T Consensus 255 ltl~~~l~~LiLAPEff~PlR~lGs~f-----H~~~~g~aa~d~i~~~l~~~~~~~~~~~~~-----------------~ 312 (559)
T COG4988 255 LTLFAGLFVLILAPEFFQPLRDLGSFF-----HAAAAGEAAADKLFTLLESPVATPGSGEKA-----------------E 312 (559)
T ss_pred ccHHHHHHHHHHhHHHHHHHHHHHHHH-----HHHhhhhhHHHHHHHHhcCCCCCCCCcccc-----------------c
Confidence 334555666666777778887777666 555555566666666666665433322100 0
Q ss_pred CCCCCcceEEEEeEEEEeCCe-eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChh
Q 016804 84 PEDDGDVLIDCRNVYKSFGEK-HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE 162 (382)
Q Consensus 84 ~~~~~~~~I~~~nvs~~yg~~-~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~ 162 (382)
........++++|++++|++. ++++|+||++++|+.++|||+||||||||+++|+|+.+|++|+|.+||.++..+....
T Consensus 313 ~~~~~~~ei~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~ 392 (559)
T COG4988 313 VANEPPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEA 392 (559)
T ss_pred cccCCCceeeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHH
Confidence 011112236667999999764 8999999999999999999999999999999999999999999999999988765555
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccC----------CCCCCChHHH
Q 016804 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDR----------LPSELSGGMK 232 (382)
Q Consensus 163 ~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~----------~~~~LSGGqr 232 (382)
++ ++++||+|+|++|+. |++|||.++. ...+ ++.+.++++.+|+.++.++ ....|||||+
T Consensus 393 ~~--k~i~~v~Q~p~lf~g-TireNi~l~~---~~~s----~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~ 462 (559)
T COG4988 393 WR--KQISWVSQNPYLFAG-TIRENILLAR---PDAS----DEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQA 462 (559)
T ss_pred HH--hHeeeeCCCCccccc-cHHHHhhccC---CcCC----HHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHH
Confidence 43 379999999999985 9999998853 1122 3456788889988877666 1256999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhch
Q 016804 233 KRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDR 312 (382)
Q Consensus 233 QRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDr 312 (382)
|||++||||++ +++++|||||||+||.++++.+.+.|.++.++ +|+|++||++..+.++ |
T Consensus 463 QRlaLARAll~-------~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~-----------ktvl~itHrl~~~~~~-D- 522 (559)
T COG4988 463 QRLALARALLS-------PASLLLLDEPTAHLDAETEQIILQALQELAKQ-----------KTVLVITHRLEDAADA-D- 522 (559)
T ss_pred HHHHHHHHhcC-------CCCEEEecCCccCCCHhHHHHHHHHHHHHHhC-----------CeEEEEEcChHHHhcC-C-
Confidence 99999999997 59999999999999999999999999999887 4999999999999875 4
Q ss_pred hccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCC
Q 016804 313 LCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSN 365 (382)
Q Consensus 313 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~ 365 (382)
+|++|++|+++++|..+++..++.
T Consensus 523 -----------------------------~I~vld~G~l~~~g~~~~L~~~~~ 546 (559)
T COG4988 523 -----------------------------RIVVLDNGRLVEQGTHEELSEKQG 546 (559)
T ss_pred -----------------------------EEEEecCCceeccCCHHHHhhcCc
Confidence 559999999999997777665443
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-49 Score=420.23 Aligned_cols=239 Identities=26% Similarity=0.427 Sum_probs=201.7
Q ss_pred CCcceEEEEeEEEEeC----CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCC-----
Q 016804 87 DGDVLIDCRNVYKSFG----EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAG----- 157 (382)
Q Consensus 87 ~~~~~I~~~nvs~~yg----~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~----- 157 (382)
+.+++|+++||+++|+ +.++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++..
T Consensus 8 ~~~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~ 87 (623)
T PRK10261 8 DARDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQV 87 (623)
T ss_pred CCCceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccc
Confidence 3456899999999996 2579999999999999999999999999999999999999999999999975421
Q ss_pred --C--CChh---hhccceEEEEecCC--CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc---ccccCCCC
Q 016804 158 --L--ISDE---EISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK---GVEDRLPS 225 (382)
Q Consensus 158 --~--~~~~---~~~~~~Ig~V~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~---~~~~~~~~ 225 (382)
. .... ..++.+||||||++ .+++.+||+||+.+++..+.+.+..+..+++.++++.+||. ...++++.
T Consensus 88 ~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~ 167 (623)
T PRK10261 88 IELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPH 167 (623)
T ss_pred cccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCc
Confidence 0 0111 11223699999998 68888999999998764333345556677889999999995 35789999
Q ss_pred CCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHH
Q 016804 226 ELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHS 304 (382)
Q Consensus 226 ~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~ 304 (382)
+|||||||||+|||||+. +|+||||||||++||+.++.++.++|++++++ | +|||+||||++
T Consensus 168 ~LSgGq~QRv~iA~AL~~-------~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g----------~tvi~itHdl~ 230 (623)
T PRK10261 168 QLSGGMRQRVMIAMALSC-------RPAVLIADEPTTALDVTIQAQILQLIKVLQKEMS----------MGVIFITHDMG 230 (623)
T ss_pred cCCHHHHHHHHHHHHHhC-------CCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcC----------CEEEEEcCCHH
Confidence 999999999999999997 69999999999999999999999999999865 5 59999999999
Q ss_pred HHHHhhchhccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHH
Q 016804 305 TIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFA 372 (382)
Q Consensus 305 ~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~ 372 (382)
++.++|||| ++|++|+|++.|+++++. .+.++++.++.
T Consensus 231 ~~~~~adri------------------------------~vl~~G~i~~~g~~~~~~~~~~~~~~~~l~ 269 (623)
T PRK10261 231 VVAEIADRV------------------------------LVMYQGEAVETGSVEQIFHAPQHPYTRALL 269 (623)
T ss_pred HHHHhCCEE------------------------------EEeeCCeecccCCHHHhhcCCCChhhhhhh
Confidence 999999988 999999999999888875 34455555544
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-48 Score=370.27 Aligned_cols=235 Identities=31% Similarity=0.521 Sum_probs=197.2
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEECCCCCChhhhc
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-----PDKGEVYIRGRKRAGLISDEEIS 165 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~-----p~sG~I~i~G~~i~~~~~~~~~~ 165 (382)
+|+++||+++|+++++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|+++|+++..........
T Consensus 3 ~l~~~~v~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~ 82 (250)
T PRK14266 3 RIEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVEL 82 (250)
T ss_pred EEEEEeEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHH
Confidence 5899999999998889999999999999999999999999999999999974 48999999999875321111112
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc----ccccCCCCCCChHHHHHHHHHHHH
Q 016804 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALARSI 241 (382)
Q Consensus 166 ~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~----~~~~~~~~~LSGGqrQRVaIArAL 241 (382)
+.+++|+||++.+|+. |+.||+.+..........+..++++.++++.+++. +..++.+.+||||||||++|||||
T Consensus 83 ~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral 161 (250)
T PRK14266 83 RKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTI 161 (250)
T ss_pred hhheEEEecCCccCcc-hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHH
Confidence 3369999999999984 99999987643222123344567788899999984 346888999999999999999999
Q ss_pred hcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccccc
Q 016804 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGH 321 (382)
Q Consensus 242 ~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~ 321 (382)
+. +|++|||||||+|||+.++..+.++|+++++ + .|+|++||+++++..+||++
T Consensus 162 ~~-------~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~----------~tiii~sh~~~~~~~~~~~i-------- 215 (250)
T PRK14266 162 AV-------SPEVILMDEPCSALDPISTTKIEDLIHKLKE-D----------YTIVIVTHNMQQATRVSKYT-------- 215 (250)
T ss_pred Hc-------CCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-C----------CeEEEEECCHHHHHhhcCEE--------
Confidence 97 6999999999999999999999999999964 4 49999999999999999877
Q ss_pred chheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 322 IDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
++|++|++++.|+++++. .+.++.+.+|+.+
T Consensus 216 ----------------------~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 247 (250)
T PRK14266 216 ----------------------SFFLNGEIIESGLTDQIFINPKDKRTEDYITG 247 (250)
T ss_pred ----------------------EEEECCeEEEeCCHHHHHhCCCChHHHHHhcc
Confidence 999999999999888875 4456677776644
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-48 Score=376.68 Aligned_cols=235 Identities=29% Similarity=0.439 Sum_probs=195.5
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEECCCCCChhh
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLISDEE 163 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p-----~sG~I~i~G~~i~~~~~~~~ 163 (382)
.++|+++||+++|+++++|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++........
T Consensus 18 ~~~l~~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~ 97 (274)
T PRK14265 18 HSVFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSV 97 (274)
T ss_pred CceEEEeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhH
Confidence 4689999999999988899999999999999999999999999999999999863 69999999998643111111
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc----ccccCCCCCCChHHHHHHHHHH
Q 016804 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALAR 239 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~----~~~~~~~~~LSGGqrQRVaIAr 239 (382)
..+.+|+|+||++.+|+ .|+.+|+.++.... ... ....+.+.++++.+++. +..++++.+|||||||||+|||
T Consensus 98 ~~~~~i~~v~q~~~l~~-~tv~~nl~~~~~~~-~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAr 174 (274)
T PRK14265 98 KLRRQVGMVFQRPNPFP-KSIYENIAFAPRAN-GYK-GNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIAR 174 (274)
T ss_pred HHhhcEEEEccCCcccc-ccHHHHHHhHHHhc-Cch-HHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHH
Confidence 12346999999999987 49999998864321 121 12334567788888873 4568899999999999999999
Q ss_pred HHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccc
Q 016804 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIF 319 (382)
Q Consensus 240 AL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~ 319 (382)
||+. +|++|||||||+|||+.++..+.++|+++++ + .|||++|||++++.++|||+
T Consensus 175 aL~~-------~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~----------~tiii~sH~~~~~~~~~d~i------ 230 (274)
T PRK14265 175 AIAM-------KPDVLLMDEPCSALDPISTRQVEELCLELKE-Q----------YTIIMVTHNMQQASRVADWT------ 230 (274)
T ss_pred HHhh-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-C----------CEEEEEeCCHHHHHHhCCEE------
Confidence 9997 6999999999999999999999999999965 3 49999999999999999988
Q ss_pred ccchheehhccCCCCcccccccEEEEEe---------CCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 320 GHIDVVIILGAVAPDKEVFFIYRLIFLY---------EGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~ii~l~---------~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
++|+ +|++++.|++.++. .+.++.+..++.+
T Consensus 231 ------------------------~~l~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~ 271 (274)
T PRK14265 231 ------------------------AFFNTEIDEYGKRRGKLVEFSPTEQMFGSPQTKEAREYISG 271 (274)
T ss_pred ------------------------EEEecccccccccCceEEEeCCHHHHHhCCCCHHHHHHhhh
Confidence 8887 89999999988875 4456677776654
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-49 Score=353.85 Aligned_cols=233 Identities=32% Similarity=0.525 Sum_probs=206.1
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECC--CCCChhhhc--c
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRA--GLISDEEIS--G 166 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~--~~~~~~~~~--~ 166 (382)
.|+++|+++.||..++|.|++|+.+.||.+.++||||||||||+|.|.-|.-|.+|+..|.|.... ....+.... +
T Consensus 2 sirv~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr 81 (242)
T COG4161 2 SIQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLR 81 (242)
T ss_pred ceEEcccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHH
Confidence 489999999999999999999999999999999999999999999999999999999999887532 222222221 3
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCC
Q 016804 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT 246 (382)
Q Consensus 167 ~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~ 246 (382)
..+|+|||...|+|++||.||+........++++++...++.++|+++.|.+++|++|-.|||||+|||+|||||+
T Consensus 82 ~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralm---- 157 (242)
T COG4161 82 RNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALM---- 157 (242)
T ss_pred HhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHh----
Confidence 3599999999999999999999775544556888888899999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchhee
Q 016804 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVI 326 (382)
Q Consensus 247 ~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~ 326 (382)
++|++||+||||++|||+-..++.++|++|...| +|-++|||..+.+.+.+.||
T Consensus 158 ---mkpqvllfdeptaaldpeitaqvv~iikel~~tg----------itqvivthev~va~k~as~v------------- 211 (242)
T COG4161 158 ---MEPQVLLFDEPTAALDPEITAQIVSIIKELAETG----------ITQVIVTHEVEVARKTASRV------------- 211 (242)
T ss_pred ---cCCcEEeecCcccccCHHHHHHHHHHHHHHHhcC----------ceEEEEEeehhHHHhhhhhe-------------
Confidence 4799999999999999999999999999999887 69999999999999999988
Q ss_pred hhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHH
Q 016804 327 ILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQ 370 (382)
Q Consensus 327 ~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~ 370 (382)
++|++|+|++.|+...|+.++.....+
T Consensus 212 -----------------vyme~g~ive~g~a~~ft~p~te~f~~ 238 (242)
T COG4161 212 -----------------VYMENGHIVEQGDASCFTEPQTEAFKN 238 (242)
T ss_pred -----------------EeeecCeeEeecchhhccCccHHHHHH
Confidence 999999999999877787554433333
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-49 Score=413.68 Aligned_cols=265 Identities=25% Similarity=0.393 Sum_probs=209.3
Q ss_pred hhHHhhhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCcceEEE
Q 016804 15 ATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDC 94 (382)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ 94 (382)
.+..+..++..++... .-........+|+......+..+.+.. . .+.. ...|++
T Consensus 290 ~~~~~~~pl~~l~~~~-----~~~~~~~~s~~ri~~~l~~~~~~~~~~-----------------~--~~~~--~~~i~~ 343 (592)
T PRK10790 290 YLGRLNEPLIELTTQQ-----SMLQQAVVAGERVFELMDGPRQQYGND-----------------D--RPLQ--SGRIDI 343 (592)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhcCCCccCCCC-----------------c--cCCC--CCeEEE
Confidence 3344556666655555 556667777788877765543211000 0 0011 123999
Q ss_pred EeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEe
Q 016804 95 RNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVF 173 (382)
Q Consensus 95 ~nvs~~yg~-~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~ 173 (382)
+||+++|++ +++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|++||.++........ +.+|+||+
T Consensus 344 ~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l--~~~i~~v~ 421 (592)
T PRK10790 344 DNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVL--RQGVAMVQ 421 (592)
T ss_pred EEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHH--HhheEEEc
Confidence 999999964 579999999999999999999999999999999999999999999999999876533332 33699999
Q ss_pred cCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChHHHHHHHHHHHHh
Q 016804 174 QSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVALARSII 242 (382)
Q Consensus 174 Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGGqrQRVaIArAL~ 242 (382)
|++.+|+. |++|||.++. ..+ ++++.++++.+|++++.++.| ..||||||||++|||||+
T Consensus 422 Q~~~lF~~-Ti~~NI~~~~----~~~----d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl 492 (592)
T PRK10790 422 QDPVVLAD-TFLANVTLGR----DIS----EEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLV 492 (592)
T ss_pred cCCccccc-hHHHHHHhCC----CCC----HHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHH
Confidence 99999985 9999998852 122 334677888888877666554 579999999999999999
Q ss_pred cCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccc
Q 016804 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHI 322 (382)
Q Consensus 243 ~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~ 322 (382)
+ +|+|||||||||+||+.+++.+.+.|+++.++ +|+|+|||+++.+.. ||+|
T Consensus 493 ~-------~~~illlDEpts~LD~~t~~~i~~~l~~~~~~-----------~tvIivtHr~~~l~~-~D~i--------- 544 (592)
T PRK10790 493 Q-------TPQILILDEATANIDSGTEQAIQQALAAVREH-----------TTLVVIAHRLSTIVE-ADTI--------- 544 (592)
T ss_pred h-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHhCC-----------CEEEEEecchHHHHh-CCEE---------
Confidence 7 59999999999999999999999999998654 499999999988775 7766
Q ss_pred hheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCC
Q 016804 323 DVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSN 365 (382)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~ 365 (382)
++|++|++++.|+.+++.....
T Consensus 545 ---------------------i~l~~G~i~~~G~~~~L~~~~~ 566 (592)
T PRK10790 545 ---------------------LVLHRGQAVEQGTHQQLLAAQG 566 (592)
T ss_pred ---------------------EEEECCEEEEEcCHHHHHhCCC
Confidence 9999999999998888765443
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-49 Score=414.22 Aligned_cols=282 Identities=22% Similarity=0.361 Sum_probs=214.2
Q ss_pred cchhhHhHhhHHhhhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCC
Q 016804 7 SGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPED 86 (382)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (382)
....++......+..++..+.+.. ......+...+|+...+..|....... . .. ++
T Consensus 282 g~~~~~~~~~~~~~~pl~~l~~~~-----~~~~~~~~~~~ri~~~~~~~~~~~~~~-~---------------~~--~~- 337 (582)
T PRK11176 282 GTITVVFSSMIALMRPLKSLTNVN-----AQFQRGMAACQTLFAILDLEQEKDEGK-R---------------VI--ER- 337 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhcCCCcCCCCC-c---------------CC--CC-
Confidence 333333444444566776666555 566677778888888776653211000 0 00 01
Q ss_pred CCcceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhh
Q 016804 87 DGDVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEI 164 (382)
Q Consensus 87 ~~~~~I~~~nvs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~ 164 (382)
....|+++||+++|++ +++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|++||.++....... .
T Consensus 338 -~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~-~ 415 (582)
T PRK11176 338 -AKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLAS-L 415 (582)
T ss_pred -CCCeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHH-H
Confidence 1123999999999964 67999999999999999999999999999999999999999999999999987653322 2
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChHHHH
Q 016804 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKK 233 (382)
Q Consensus 165 ~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGGqrQ 233 (382)
+.+|+||||++.+|+ .|++|||.++.. ...+ ++++.++++.+|+.++.++.| .+|||||||
T Consensus 416 -~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~~--~~~~----~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQ 487 (582)
T PRK11176 416 -RNQVALVSQNVHLFN-DTIANNIAYART--EQYS----REQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQ 487 (582)
T ss_pred -HhhceEEccCceeec-chHHHHHhcCCC--CCCC----HHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHH
Confidence 236999999999998 599999987521 1122 344677788888776555443 569999999
Q ss_pred HHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 234 RVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 234 RVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
|++|||||++ +|+|||||||||+||+.++..+++.|.++.+. +|+|+|||+++.+.. ||+|
T Consensus 488 Ri~LARall~-------~~~ililDEptsaLD~~t~~~i~~~l~~~~~~-----------~tvI~VtHr~~~~~~-~D~I 548 (582)
T PRK11176 488 RIAIARALLR-------DSPILILDEATSALDTESERAIQAALDELQKN-----------RTSLVIAHRLSTIEK-ADEI 548 (582)
T ss_pred HHHHHHHHHh-------CCCEEEEECccccCCHHHHHHHHHHHHHHhCC-----------CEEEEEecchHHHHh-CCEE
Confidence 9999999997 59999999999999999999999999998553 499999999988764 7766
Q ss_pred ccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHH
Q 016804 314 CLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFA 372 (382)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 372 (382)
++|++|+|++.|+.+++.... +..+.++
T Consensus 549 ------------------------------i~l~~g~i~e~g~~~~l~~~~-~~y~~l~ 576 (582)
T PRK11176 549 ------------------------------LVVEDGEIVERGTHAELLAQN-GVYAQLH 576 (582)
T ss_pred ------------------------------EEEECCEEEEeCCHHHHHhCC-ChHHHHH
Confidence 999999999999777766443 3344433
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-48 Score=364.29 Aligned_cols=205 Identities=35% Similarity=0.569 Sum_probs=177.1
Q ss_pred eEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChh-hhc
Q 016804 91 LIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE-EIS 165 (382)
Q Consensus 91 ~I~~~nvs~~yg~----~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~-~~~ 165 (382)
.|+++||++.|++ +.+|+++||++++||+++|+||||||||||+++|+|+++|++|+|+++|+++....... ...
T Consensus 1 ~l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (220)
T TIGR02982 1 VISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQL 80 (220)
T ss_pred CEEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHH
Confidence 3789999999975 67999999999999999999999999999999999999999999999999875322111 112
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCC
Q 016804 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (382)
Q Consensus 166 ~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~ 245 (382)
+..|+|+||++.+|+.+|+.||+.+..........++..+.+.++++.+|+.+..++++.+||+|||||++|||||+.
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~-- 158 (220)
T TIGR02982 81 RRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVH-- 158 (220)
T ss_pred HhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhc--
Confidence 336999999999998899999998865433223445556678899999999999999999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 246 ~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|++|||||||+|||+.++..+.++|+++.++ + .|+|++||+++. .++||++
T Consensus 159 -----~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~----------~tii~~sh~~~~-~~~~d~v 211 (220)
T TIGR02982 159 -----RPKLVLADEPTAALDSKSGRDVVELMQKLAREQG----------CTILIVTHDNRI-LDVADRI 211 (220)
T ss_pred -----CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHH-HhhCCEE
Confidence 69999999999999999999999999999864 4 599999999985 5788877
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-49 Score=424.47 Aligned_cols=281 Identities=26% Similarity=0.420 Sum_probs=217.5
Q ss_pred cccchhhHhHhhHHhhhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCC
Q 016804 5 SSSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEP 84 (382)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (382)
+....+.+...+..++.++..+.+.. .....+....+|+......|....... ... ... ... +
T Consensus 408 t~G~lva~~~l~~~~~~p~~~l~~~~-----~~~~~~~~~~~ri~~il~~~~e~~~~~-~~~-------~~~--~~~--~ 470 (710)
T TIGR03796 408 TIGMLVAFQSLMSSFLEPVNNLVGFG-----GTLQELEGDLNRLDDVLRNPVDPLLEE-EEA-------PAA--GSE--P 470 (710)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCCcccccc-ccc-------ccc--ccc--c
Confidence 34455555566666777888777776 677888899999999988764321110 000 000 000 0
Q ss_pred CCCCcceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChh
Q 016804 85 EDDGDVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE 162 (382)
Q Consensus 85 ~~~~~~~I~~~nvs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~ 162 (382)
.......|+++||+|+|++ +++|+|+||+|++||.+||+||||||||||+|+|+|+++|++|+|++||.++..+....
T Consensus 471 ~~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~ 550 (710)
T TIGR03796 471 SPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREV 550 (710)
T ss_pred CCCCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHH
Confidence 0011124999999999974 57999999999999999999999999999999999999999999999999987653322
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChHH
Q 016804 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGM 231 (382)
Q Consensus 163 ~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGGq 231 (382)
. +.+||||+|++.+|+ .|++|||.++. ...+ ++++.++++.++++++.++.| ..|||||
T Consensus 551 -l-r~~i~~v~Q~~~lf~-gTi~eNi~l~~---~~~~----~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQ 620 (710)
T TIGR03796 551 -L-ANSVAMVDQDIFLFE-GTVRDNLTLWD---PTIP----DADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQ 620 (710)
T ss_pred -H-HhheeEEecCChhhh-ccHHHHhhCCC---CCCC----HHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHH
Confidence 2 336999999999997 59999998742 1123 344667788888876655443 6799999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhc
Q 016804 232 KKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVD 311 (382)
Q Consensus 232 rQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aD 311 (382)
|||++|||||++ +|++||||||||+||+.+++.+.+.|++ .+ +|+|+|||+++.+.. ||
T Consensus 621 rQRiaLARall~-------~p~iliLDEptS~LD~~te~~i~~~l~~---~~----------~T~IiitHrl~~i~~-~D 679 (710)
T TIGR03796 621 RQRLEIARALVR-------NPSILILDEATSALDPETEKIIDDNLRR---RG----------CTCIIVAHRLSTIRD-CD 679 (710)
T ss_pred HHHHHHHHHHhh-------CCCEEEEECccccCCHHHHHHHHHHHHh---cC----------CEEEEEecCHHHHHh-CC
Confidence 999999999997 5999999999999999999999999976 33 599999999999875 77
Q ss_pred hhccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccC
Q 016804 312 RLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSS 363 (382)
Q Consensus 312 rv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~ 363 (382)
|| ++|++|+|+++|+.+++...
T Consensus 680 ~I------------------------------ivl~~G~i~~~G~~~~Ll~~ 701 (710)
T TIGR03796 680 EI------------------------------IVLERGKVVQRGTHEELWAV 701 (710)
T ss_pred EE------------------------------EEEeCCEEEEecCHHHHHHc
Confidence 66 99999999999977777643
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-49 Score=360.42 Aligned_cols=201 Identities=38% Similarity=0.579 Sum_probs=174.8
Q ss_pred EEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCCh--hhhccceEEE
Q 016804 94 CRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD--EEISGLRIGL 171 (382)
Q Consensus 94 ~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~--~~~~~~~Ig~ 171 (382)
++||++.|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...... ....+.+++|
T Consensus 1 i~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~ 80 (206)
T TIGR03608 1 LKNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGY 80 (206)
T ss_pred CcceEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeE
Confidence 47999999988999999999999999999999999999999999999999999999999986432111 1112336999
Q ss_pred EecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCC
Q 016804 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~ 251 (382)
++|++.+|+.+|++||+.+.... .+....+..+++.++++.+|+.+..++++.+||||||||++|||||+. +
T Consensus 81 ~~q~~~~~~~~t~~e~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~-------~ 152 (206)
T TIGR03608 81 LFQNFALIENETVEENLDLGLKY-KKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILK-------D 152 (206)
T ss_pred EecchhhccCCcHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHc-------C
Confidence 99999999989999999886532 223344556678899999999988999999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 252 P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
|++|||||||+|||+.++..+.+.|+++.+++ .|+|++||+++.+ .+||++
T Consensus 153 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tii~~sh~~~~~-~~~d~i 203 (206)
T TIGR03608 153 PPLILADEPTGSLDPKNRDEVLDLLLELNDEG----------KTIIIVTHDPEVA-KQADRV 203 (206)
T ss_pred CCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHH-hhcCEE
Confidence 99999999999999999999999999997765 5999999999876 579987
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-48 Score=367.80 Aligned_cols=222 Identities=27% Similarity=0.420 Sum_probs=188.7
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC--CCCCccEEEECCEECCCCCChhhhcc
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--LAPDKGEVYIRGRKRAGLISDEEISG 166 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl--~~p~sG~I~i~G~~i~~~~~~~~~~~ 166 (382)
.++|+++||+++|+++.+|+++||+|++||++||+||||||||||+++|+|+ ++|++|+|+++|.++.... .....+
T Consensus 5 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~-~~~~~~ 83 (252)
T CHL00131 5 KPILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLE-PEERAH 83 (252)
T ss_pred CceEEEEeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCC-hhhhhe
Confidence 3579999999999888899999999999999999999999999999999998 6899999999999876532 222222
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhHhhcC---C---CCHHHHHHHHHHHHHHcCCc-ccccCCCC-CCChHHHHHHHHH
Q 016804 167 LRIGLVFQSAALFDSLTVRENVGFLLYENS---K---MRDEQISELVKENLAAVGLK-GVEDRLPS-ELSGGMKKRVALA 238 (382)
Q Consensus 167 ~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~---~---~~~~~~~~~v~~~L~~~gL~-~~~~~~~~-~LSGGqrQRVaIA 238 (382)
..++|+||++.+++.+|+.+|+.+...... . ....+..+++.++++.+|+. ...++.+. +|||||||||+||
T Consensus 84 ~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la 163 (252)
T CHL00131 84 LGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEIL 163 (252)
T ss_pred eeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHH
Confidence 248999999999999999999987542111 0 11223445678899999997 47788887 5999999999999
Q ss_pred HHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHh-hchhcccc
Q 016804 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA-VDRLCLFQ 317 (382)
Q Consensus 239 rAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~-aDrv~~~~ 317 (382)
|||+. +|++|||||||+|||+.++..+.++|+++.+++ .|+|++|||++++..+ |||+
T Consensus 164 ~al~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g----------~tii~~tH~~~~~~~~~~d~i---- 222 (252)
T CHL00131 164 QMALL-------DSELAILDETDSGLDIDALKIIAEGINKLMTSE----------NSIILITHYQRLLDYIKPDYV---- 222 (252)
T ss_pred HHHHc-------CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCC----------CEEEEEecCHHHHHhhhCCEE----
Confidence 99997 699999999999999999999999999998765 5999999999999886 7877
Q ss_pred ccccchheehhccCCCCcccccccEEEEEeCCeEEEEeccc
Q 016804 318 IFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTH 358 (382)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~ 358 (382)
++|++|++++.|+++
T Consensus 223 --------------------------~~l~~G~i~~~~~~~ 237 (252)
T CHL00131 223 --------------------------HVMQNGKIIKTGDAE 237 (252)
T ss_pred --------------------------EEEeCCEEEEecChh
Confidence 999999999999665
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-48 Score=406.85 Aligned_cols=236 Identities=27% Similarity=0.444 Sum_probs=198.3
Q ss_pred ceEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEECCCCCC
Q 016804 90 VLIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLIS 160 (382)
Q Consensus 90 ~~I~~~nvs~~yg~----~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p-----~sG~I~i~G~~i~~~~~ 160 (382)
++|+++||+++|++ +++|+++||+|++||++||+||||||||||+|+|+|+++| ++|+|+++|+++.....
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 83 (529)
T PRK15134 4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASE 83 (529)
T ss_pred ceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCH
Confidence 47999999999963 5799999999999999999999999999999999999987 79999999998754322
Q ss_pred hh--hhccceEEEEecCCC--CCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc---cccCCCCCCChHHHH
Q 016804 161 DE--EISGLRIGLVFQSAA--LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG---VEDRLPSELSGGMKK 233 (382)
Q Consensus 161 ~~--~~~~~~Ig~V~Q~~~--l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~---~~~~~~~~LSGGqrQ 233 (382)
.. ..++.+||||||++. +++.+|+.+|+.+......+.+..+..+++.++++.+||.+ ..++++.+|||||||
T Consensus 84 ~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~q 163 (529)
T PRK15134 84 QTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQ 163 (529)
T ss_pred HHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHH
Confidence 11 112236999999985 67778999999765422223445556678899999999975 468999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhch
Q 016804 234 RVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDR 312 (382)
Q Consensus 234 RVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDr 312 (382)
||+|||||+. +|++|||||||++||+.++..+.++|++++++ + +|||+||||++++..+|||
T Consensus 164 rv~iAraL~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g----------~tvi~vtHd~~~~~~~~dr 226 (529)
T PRK15134 164 RVMIAMALLT-------RPELLIADEPTTALDVSVQAQILQLLRELQQELN----------MGLLFITHNLSIVRKLADR 226 (529)
T ss_pred HHHHHHHHhc-------CCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcC----------CeEEEEcCcHHHHHHhcCE
Confidence 9999999997 69999999999999999999999999999765 5 5999999999999999998
Q ss_pred hccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEeccccccc-CCCHHHHHHH
Q 016804 313 LCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFA 372 (382)
Q Consensus 313 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~-~~~~~~~~~~ 372 (382)
| ++|++|++++.|.+.++.. +.+...++++
T Consensus 227 i------------------------------~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 257 (529)
T PRK15134 227 V------------------------------AVMQNGRCVEQNRAATLFSAPTHPYTQKLL 257 (529)
T ss_pred E------------------------------EEEECCEEEEeCCHHHHhhCCCCHHHHHHH
Confidence 8 9999999999998877653 3344555554
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-49 Score=366.72 Aligned_cols=201 Identities=32% Similarity=0.474 Sum_probs=173.8
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
+++|+++||+++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... .. .+.+
T Consensus 5 ~~~i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~-~~-~~~~ 82 (225)
T PRK10247 5 SPLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKP-EI-YRQQ 82 (225)
T ss_pred CceEEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCH-HH-HHhc
Confidence 457999999999998899999999999999999999999999999999999999999999999998754322 22 2336
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaIArAL~~~~~~ 247 (382)
++|+||++.+|+ .|++||+.+...... ... ..+++.++++.+++. ...++++.+|||||||||+|||||+.
T Consensus 83 i~~~~q~~~l~~-~tv~enl~~~~~~~~-~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~---- 154 (225)
T PRK10247 83 VSYCAQTPTLFG-DTVYDNLIFPWQIRN-QQP--DPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQF---- 154 (225)
T ss_pred cEEEeccccccc-ccHHHHHHhHHhhcC-CCh--HHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhc----
Confidence 999999999997 599999987543221 111 234567899999996 57899999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 248 ~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|++|||||||+|||+.++..+.++|+++.++ + .|+|++||+++++. .|||+
T Consensus 155 ---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tvii~sh~~~~~~-~~d~i 207 (225)
T PRK10247 155 ---MPKVLLLDEITSALDESNKHNVNEIIHRYVREQN----------IAVLWVTHDKDEIN-HADKV 207 (225)
T ss_pred ---CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEECChHHHH-hCCEE
Confidence 69999999999999999999999999999765 4 59999999999986 68887
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-49 Score=372.81 Aligned_cols=218 Identities=30% Similarity=0.574 Sum_probs=203.7
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
+++++++|+|+||++.+++|+||++++|++.|++|||||||||.+|+|+|+++|++|+|.|+|.++... .+.+|
T Consensus 1 ~~L~ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~------~~~rI 74 (300)
T COG4152 1 MALEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQE------IKNRI 74 (300)
T ss_pred CceEEecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhh------hhhhc
Confidence 358999999999999999999999999999999999999999999999999999999999999986532 12369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
||+|.+..||+.+||.|.+.|.. ...+++.+++++.+..||+++++.+...+++.+||.|++|++.+-.|+++
T Consensus 75 GyLPEERGLy~k~tv~dql~yla-~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviH------ 147 (300)
T COG4152 75 GYLPEERGLYPKMTVEDQLKYLA-ELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIH------ 147 (300)
T ss_pred ccChhhhccCccCcHHHHHHHHH-HhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhc------
Confidence 99999999999999999999866 45678999999999999999999999999999999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
+|+++|||||||||||.+.+.+.+.+.+++++| +|||++||.|+.++++||++
T Consensus 148 -ePeLlILDEPFSGLDPVN~elLk~~I~~lk~~G----------atIifSsH~Me~vEeLCD~l---------------- 200 (300)
T COG4152 148 -EPELLILDEPFSGLDPVNVELLKDAIFELKEEG----------ATIIFSSHRMEHVEELCDRL---------------- 200 (300)
T ss_pred -CCCEEEecCCccCCChhhHHHHHHHHHHHHhcC----------CEEEEecchHHHHHHHhhhh----------------
Confidence 799999999999999999999999999999998 69999999999999999999
Q ss_pred cCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 330 AVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
+.|++|+.|-+|+..++.
T Consensus 201 --------------lmL~kG~~V~~G~v~~ir 218 (300)
T COG4152 201 --------------LMLKKGQTVLYGTVEDIR 218 (300)
T ss_pred --------------heecCCceEEeccHHHHH
Confidence 889999999999887764
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-48 Score=407.78 Aligned_cols=237 Identities=28% Similarity=0.489 Sum_probs=200.7
Q ss_pred CcceEEEEeEEEEeC-----------CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECC
Q 016804 88 GDVLIDCRNVYKSFG-----------EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRA 156 (382)
Q Consensus 88 ~~~~I~~~nvs~~yg-----------~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~ 156 (382)
..++|+++||+++|+ ++++|+++||+|++||++||+||||||||||+|+|+|+++ ++|+|+++|+++.
T Consensus 272 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~ 350 (529)
T PRK15134 272 ASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLH 350 (529)
T ss_pred CCCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEcc
Confidence 356899999999995 3579999999999999999999999999999999999995 9999999999875
Q ss_pred CCCChhh-hccceEEEEecCC--CCCCCCCHHHHHHhhHhhcC-CCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHH
Q 016804 157 GLISDEE-ISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENS-KMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGM 231 (382)
Q Consensus 157 ~~~~~~~-~~~~~Ig~V~Q~~--~l~~~lTV~eni~~~~~~~~-~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGq 231 (382)
....... ..+.+|||+||++ .+++.+||.||+.++...+. .....+.++++.++++.+|+. +..++++.+|||||
T Consensus 351 ~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~ 430 (529)
T PRK15134 351 NLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQ 430 (529)
T ss_pred ccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHH
Confidence 4321111 1123699999997 48888999999988653221 123344456788999999997 57899999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhh
Q 016804 232 KKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAV 310 (382)
Q Consensus 232 rQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~a 310 (382)
||||+|||||+. +|++|||||||+|||+.++..++++|++++++ + .|||+||||++++..+|
T Consensus 431 ~qrv~la~al~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tvi~vsHd~~~~~~~~ 493 (529)
T PRK15134 431 RQRIAIARALIL-------KPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQ----------LAYLFISHDLHVVRALC 493 (529)
T ss_pred HHHHHHHHHHhC-------CCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhC----------CEEEEEeCCHHHHHHhc
Confidence 999999999997 69999999999999999999999999999875 4 59999999999999999
Q ss_pred chhccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHH
Q 016804 311 DRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFA 372 (382)
Q Consensus 311 Drv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~ 372 (382)
||+ ++|++|+|++.|++.++. .+.++++.+++
T Consensus 494 d~i------------------------------~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 526 (529)
T PRK15134 494 HQV------------------------------IVLRQGEVVEQGDCERVFAAPQQEYTRQLL 526 (529)
T ss_pred CeE------------------------------EEEECCEEEEEcCHHHHhcCCCChHHHHHh
Confidence 988 999999999999888875 45677777765
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-49 Score=421.04 Aligned_cols=276 Identities=30% Similarity=0.411 Sum_probs=220.1
Q ss_pred ccccchhhHhHhhHHhhhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCC
Q 016804 4 LSSSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFE 83 (382)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (382)
++....+.+......+++++..+.+.. .-........+|+......|+....... ..
T Consensus 399 ls~G~l~a~~~~~~~~~~p~~~l~~~~-----~~~~~~~~~~~ri~~il~~~~e~~~~~~----------------~~-- 455 (694)
T TIGR03375 399 LTMGGLIACVMLSGRALAPLGQLAGLL-----TRYQQAKTALQSLDELMQLPVERPEGTR----------------FL-- 455 (694)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCCCCCCCCC----------------CC--
Confidence 344555566666667788888877777 6778889999999999887753211000 00
Q ss_pred CCCCCcceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCCh
Q 016804 84 PEDDGDVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD 161 (382)
Q Consensus 84 ~~~~~~~~I~~~nvs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~ 161 (382)
........|+++||+|+|++ +++|+|+||+|++||.+||+||||||||||+|+|+|+++|++|+|.+||.++......
T Consensus 456 ~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~ 535 (694)
T TIGR03375 456 HRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPA 535 (694)
T ss_pred CCCCccceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHH
Confidence 00011124999999999963 5699999999999999999999999999999999999999999999999998765333
Q ss_pred hhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChH
Q 016804 162 EEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGG 230 (382)
Q Consensus 162 ~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGG 230 (382)
. . +.+|+||+|++.+|+. |++||+.++. ...+ ++++.++++.+++.++.++.| ..||||
T Consensus 536 ~-l-r~~i~~v~Q~~~lf~~-TI~eNi~~~~---~~~~----~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgG 605 (694)
T TIGR03375 536 D-L-RRNIGYVPQDPRLFYG-TLRDNIALGA---PYAD----DEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGG 605 (694)
T ss_pred H-H-HhccEEECCChhhhhh-hHHHHHhCCC---CCCC----HHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHH
Confidence 3 2 3469999999999984 9999998742 1122 344677788888877666555 579999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhh
Q 016804 231 MKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAV 310 (382)
Q Consensus 231 qrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~a 310 (382)
||||++|||||++ +|++||||||||+||+.+++.+++.|.++.++ +|+|+|||+++.+. .|
T Consensus 606 QrQRlalARall~-------~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~-----------~T~iiItHrl~~~~-~~ 666 (694)
T TIGR03375 606 QRQAVALARALLR-------DPPILLLDEPTSAMDNRSEERFKDRLKRWLAG-----------KTLVLVTHRTSLLD-LV 666 (694)
T ss_pred HHHHHHHHHHHhc-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCC-----------CEEEEEecCHHHHH-hC
Confidence 9999999999997 59999999999999999999999999998653 49999999999875 57
Q ss_pred chhccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 311 DRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 311 Drv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
||| ++|++|+++++|+.+|+.
T Consensus 667 D~i------------------------------ivl~~G~i~e~G~~~eLl 687 (694)
T TIGR03375 667 DRI------------------------------IVMDNGRIVADGPKDQVL 687 (694)
T ss_pred CEE------------------------------EEEeCCEEEeeCCHHHHH
Confidence 766 999999999999766654
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-48 Score=369.07 Aligned_cols=228 Identities=26% Similarity=0.419 Sum_probs=193.4
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC----CccEEEECCEECCCCCChhhhcc
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP----DKGEVYIRGRKRAGLISDEEISG 166 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p----~sG~I~i~G~~i~~~~~~~~~~~ 166 (382)
+|+++||+++| ++++|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++.. ....+
T Consensus 4 ~l~~~~l~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~----~~~~~ 78 (254)
T PRK10418 4 QIELRNIALQA-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAP----CALRG 78 (254)
T ss_pred EEEEeCeEEEe-ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccc----ccccc
Confidence 59999999999 57899999999999999999999999999999999999999 99999999998642 11122
Q ss_pred ceEEEEecCCC--CCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc---cccCCCCCCChHHHHHHHHHHHH
Q 016804 167 LRIGLVFQSAA--LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG---VEDRLPSELSGGMKKRVALARSI 241 (382)
Q Consensus 167 ~~Ig~V~Q~~~--l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~---~~~~~~~~LSGGqrQRVaIArAL 241 (382)
..|+|+||++. +++.+|+.+|+.+.+... +... ..+++.++++.+++.+ ..++.+.+|||||||||+|||||
T Consensus 79 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral 155 (254)
T PRK10418 79 RKIATIMQNPRSAFNPLHTMHTHARETCLAL-GKPA--DDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALAL 155 (254)
T ss_pred ceEEEEecCCccccCccccHHHHHHHHHHHc-CCCh--HHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHH
Confidence 36999999984 455679999987643221 1222 2356788999999986 57899999999999999999999
Q ss_pred hcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccc
Q 016804 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFG 320 (382)
Q Consensus 242 ~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~ 320 (382)
+. +|++|||||||+|||+.++..+.++|+++.++ | .|||++||+++++..+|||+
T Consensus 156 ~~-------~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g----------~til~~sH~~~~~~~~~d~v------- 211 (254)
T PRK10418 156 LC-------EAPFIIADEPTTDLDVVAQARILDLLESIVQKRA----------LGMLLVTHDMGVVARLADDV------- 211 (254)
T ss_pred hc-------CCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcC----------cEEEEEecCHHHHHHhCCEE-------
Confidence 97 69999999999999999999999999999765 4 59999999999999999988
Q ss_pred cchheehhccCCCCcccccccEEEEEeCCeEEEEeccccccc-CCCHHHHHHHc
Q 016804 321 HIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFAS 373 (382)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~ 373 (382)
++|++|++++.|+++++.. +.++....|+.
T Consensus 212 -----------------------~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~ 242 (254)
T PRK10418 212 -----------------------AVMSHGRIVEQGDVETLFNAPKHAVTRSLVS 242 (254)
T ss_pred -----------------------EEEECCEEEEecCHHHHhhCCCCHHHHHHHH
Confidence 9999999999998888754 34566666654
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-48 Score=404.18 Aligned_cols=220 Identities=24% Similarity=0.354 Sum_probs=192.4
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
++|+++||+++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.... .....+.+|
T Consensus 3 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~-~~~~~~~~i 81 (501)
T PRK11288 3 PYLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFAS-TTAALAAGV 81 (501)
T ss_pred ceEEEeeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCC-HHHHHhCCE
Confidence 5799999999999888999999999999999999999999999999999999999999999999875321 212223469
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhh-cCC-CCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYE-NSK-MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~-~~~-~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~ 247 (382)
||+||++.+|+.+||++|+.++... ..+ ....+..+++.++++.+|+.+..++++.+|||||||||+|||||+.
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~---- 157 (501)
T PRK11288 82 AIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALAR---- 157 (501)
T ss_pred EEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHh----
Confidence 9999999999999999999885421 111 2344556678899999999888899999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheeh
Q 016804 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVII 327 (382)
Q Consensus 248 ~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~ 327 (382)
+|++|||||||++||+.++..+.++|++++++| .|+|+||||++++.++|||+
T Consensus 158 ---~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g----------~tiiiitHd~~~~~~~~d~i-------------- 210 (501)
T PRK11288 158 ---NARVIAFDEPTSSLSAREIEQLFRVIRELRAEG----------RVILYVSHRMEEIFALCDAI-------------- 210 (501)
T ss_pred ---CCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHhCCEE--------------
Confidence 699999999999999999999999999997766 59999999999999999988
Q ss_pred hccCCCCcccccccEEEEEeCCeEEEEecc
Q 016804 328 LGAVAPDKEVFFIYRLIFLYEGKIVWQGMT 357 (382)
Q Consensus 328 ~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~ 357 (382)
++|++|+++..+..
T Consensus 211 ----------------~~l~~G~i~~~~~~ 224 (501)
T PRK11288 211 ----------------TVFKDGRYVATFDD 224 (501)
T ss_pred ----------------EEEECCEEEeecCc
Confidence 99999999876643
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-49 Score=421.61 Aligned_cols=284 Identities=22% Similarity=0.314 Sum_probs=219.4
Q ss_pred cccchhhHhHhhHHhhhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCC
Q 016804 5 SSSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEP 84 (382)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (382)
+....+.+...+..+++++..+.+.. .-...+....+|+......|......... . +
T Consensus 410 s~G~lva~~~l~~~~~~pl~~l~~~~-----~~~~~~~~~~~ri~~~l~~~~e~~~~~~~----------------~--~ 466 (708)
T TIGR01193 410 TLGQLITFNALLSYFLTPLENIINLQ-----PKLQAARVANNRLNEVYLVDSEFINKKKR----------------T--E 466 (708)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCCcccccccc----------------c--C
Confidence 34445555555666677887777666 66778888999999998876432111000 0 0
Q ss_pred CCCCcceEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhh
Q 016804 85 EDDGDVLIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE 163 (382)
Q Consensus 85 ~~~~~~~I~~~nvs~~yg-~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~ 163 (382)
.......|+++||+|+|+ ++++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|++||.++........
T Consensus 467 ~~~~~~~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~l 546 (708)
T TIGR01193 467 LNNLNGDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTL 546 (708)
T ss_pred CCCCCCcEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHH
Confidence 001112399999999997 4679999999999999999999999999999999999999999999999999876543332
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCC-----------CCCCChHHH
Q 016804 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL-----------PSELSGGMK 232 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~-----------~~~LSGGqr 232 (382)
+.+||||+|++.+|+. |++|||.++.. ...+ ++++.++++.++++++.++. ...||||||
T Consensus 547 --r~~i~~v~Q~~~lf~g-TI~eNi~l~~~--~~~~----~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQr 617 (708)
T TIGR01193 547 --RQFINYLPQEPYIFSG-SILENLLLGAK--ENVS----QDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQK 617 (708)
T ss_pred --HHheEEEecCceehhH-HHHHHHhccCC--CCCC----HHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHH
Confidence 2369999999999985 99999988521 1122 23456777877776554443 367999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhch
Q 016804 233 KRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDR 312 (382)
Q Consensus 233 QRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDr 312 (382)
||++|||||++ +|++|||||||++||+.+++.+++.|+++ ++ +|+|+|||+++.+. .||+
T Consensus 618 QRialARall~-------~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~----------~T~IiitHr~~~~~-~~D~ 677 (708)
T TIGR01193 618 QRIALARALLT-------DSKVLILDESTSNLDTITEKKIVNNLLNL--QD----------KTIIFVAHRLSVAK-QSDK 677 (708)
T ss_pred HHHHHHHHHhh-------CCCEEEEeCccccCCHHHHHHHHHHHHHh--cC----------CEEEEEecchHHHH-cCCE
Confidence 99999999997 59999999999999999999999999885 34 49999999999875 5776
Q ss_pred hccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHH
Q 016804 313 LCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQF 371 (382)
Q Consensus 313 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~ 371 (382)
| ++|++|+++++|+.+++... .+...++
T Consensus 678 i------------------------------~~l~~G~i~~~G~~~~L~~~-~~~y~~l 705 (708)
T TIGR01193 678 I------------------------------IVLDHGKIIEQGSHDELLDR-NGFYASL 705 (708)
T ss_pred E------------------------------EEEECCEEEEECCHHHHHhc-CCcHHHH
Confidence 6 99999999999977776643 3333443
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-48 Score=369.42 Aligned_cols=235 Identities=32% Similarity=0.476 Sum_probs=196.9
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEECCCCCChhh
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLISDEE 163 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p-----~sG~I~i~G~~i~~~~~~~~ 163 (382)
.+.+.+++++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++........
T Consensus 6 ~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 6 PIVMDCKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred CceEEEEeEEEEeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 4679999999999998999999999999999999999999999999999999986 79999999998743211111
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc----cccCCCCCCChHHHHHHHHHH
Q 016804 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG----VEDRLPSELSGGMKKRVALAR 239 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~----~~~~~~~~LSGGqrQRVaIAr 239 (382)
..+.+|+|+||++.+|. +|++||+.++..... . ..+..+.+.++++.+++.. ..++++.+|||||+||++|||
T Consensus 86 ~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~-~-~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~lar 162 (261)
T PRK14263 86 VVRRYIGMVFQQPNPFS-MSIFDNVAFGLRLNR-Y-KGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIAR 162 (261)
T ss_pred hhhhceEEEecCCcccc-ccHHHHHHHHHhhcC-c-hHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHH
Confidence 12336999999999884 899999988753221 2 2334567888999999853 346788999999999999999
Q ss_pred HHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccc
Q 016804 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIF 319 (382)
Q Consensus 240 AL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~ 319 (382)
||+. +|++|||||||+|||+.++.++.++|+++.+ + .|+|++||+++++..+|||+
T Consensus 163 al~~-------~p~llllDEPtsgLD~~~~~~l~~~l~~~~~-~----------~tii~isH~~~~i~~~~d~v------ 218 (261)
T PRK14263 163 AIAT-------EPEVLLLDEPCSALDPIATRRVEELMVELKK-D----------YTIALVTHNMQQAIRVADTT------ 218 (261)
T ss_pred HHHc-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-C----------CeEEEEeCCHHHHHHhCCEE------
Confidence 9997 6999999999999999999999999999954 4 49999999999999999988
Q ss_pred ccchheehhccCCCCcccccccEEEEEe--------CCeEEEEeccccccc-CCCHHHHHHHcC
Q 016804 320 GHIDVVIILGAVAPDKEVFFIYRLIFLY--------EGKIVWQGMTHEFTS-SSNPIVQQFASG 374 (382)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~ii~l~--------~G~i~~~g~~~~~~~-~~~~~~~~~~~~ 374 (382)
++|+ +|++++.|+++++.. +.++....+..|
T Consensus 219 ------------------------~~l~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 258 (261)
T PRK14263 219 ------------------------AFFSVDISQGTRTGYLVEMGPTAQIFQNPREQLTSDYISG 258 (261)
T ss_pred ------------------------EEEecccccccCCceEEEeCCHHHHHhCCCcHHHHHHhhc
Confidence 8885 899999998888754 345666666655
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-49 Score=354.02 Aligned_cols=205 Identities=38% Similarity=0.570 Sum_probs=181.6
Q ss_pred eEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhh--h
Q 016804 91 LIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE--I 164 (382)
Q Consensus 91 ~I~~~nvs~~yg~----~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~--~ 164 (382)
+|++++++|..+. .++|++|+|.|++||.+||||||||||||||-+++||..|++|+|++.|+++..+..+.. .
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 6899999999864 479999999999999999999999999999999999999999999999999987654432 2
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcC
Q 016804 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFD 244 (382)
Q Consensus 165 ~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~ 244 (382)
+..+||||||+..|.|+||..||++.++... +-...+....+.++|+++||.+.+..||.+|||||||||+|||||+.
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~-ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~- 163 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELR-GESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAG- 163 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhc-CCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcC-
Confidence 3446999999999999999999999987533 32334456678899999999999999999999999999999999985
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 245 ~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|+||+.||||.+||..+-+.+.++|-.++++.. +|.|+||||...+.+ |+|.
T Consensus 164 ------~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G---------~TlVlVTHD~~LA~R-c~R~ 216 (228)
T COG4181 164 ------RPDVLFADEPTGNLDRATGDKIADLLFALNRERG---------TTLVLVTHDPQLAAR-CDRQ 216 (228)
T ss_pred ------CCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcC---------ceEEEEeCCHHHHHh-hhhe
Confidence 7999999999999999999999999999987742 699999999998876 6766
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-48 Score=377.20 Aligned_cols=243 Identities=32% Similarity=0.483 Sum_probs=199.8
Q ss_pred CCCCcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEECCCCC
Q 016804 85 EDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-----PDKGEVYIRGRKRAGLI 159 (382)
Q Consensus 85 ~~~~~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~-----p~sG~I~i~G~~i~~~~ 159 (382)
+-+..++|+++||+++|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++ |++|+|+++|.++....
T Consensus 39 ~~~~~~~l~i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~ 118 (305)
T PRK14264 39 EFDGDAKLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDG 118 (305)
T ss_pred ccCCCceEEEEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 3345568999999999998899999999999999999999999999999999999986 68999999999875311
Q ss_pred ChhhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcC-----------CCC-HHHHHHHHHHHHHHcCCc----ccccCC
Q 016804 160 SDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENS-----------KMR-DEQISELVKENLAAVGLK----GVEDRL 223 (382)
Q Consensus 160 ~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~-----------~~~-~~~~~~~v~~~L~~~gL~----~~~~~~ 223 (382)
......+.+|+|+||++.+|+ .||+||+.++..... ... .....+++.++++.+++. +..+++
T Consensus 119 ~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 197 (305)
T PRK14264 119 VNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDN 197 (305)
T ss_pred ccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCc
Confidence 111112336999999999998 599999988643211 011 223356678899999884 456888
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCH
Q 016804 224 PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQH 303 (382)
Q Consensus 224 ~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl 303 (382)
+.+|||||||||+|||||++ +|+||||||||+|||+.++..+.++|++++++ .|+|++||++
T Consensus 198 ~~~LSgGq~qrv~LAraL~~-------~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~-----------~tiiivtH~~ 259 (305)
T PRK14264 198 ALGLSGGQQQRLCIARCLAV-------DPEVILMDEPASALDPIATSKIEDLIEELAEE-----------YTVVVVTHNM 259 (305)
T ss_pred cccCCHHHHHHHHHHHHHhc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHhcC-----------CEEEEEEcCH
Confidence 99999999999999999997 69999999999999999999999999999764 4999999999
Q ss_pred HHHHHhhchhccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEeccccccc-CCCHHHHHHHcCC
Q 016804 304 STIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFASGS 375 (382)
Q Consensus 304 ~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~~~ 375 (382)
+.+..+|||+ +++|++|++++.|+++++.. ..++.+.+++.+.
T Consensus 260 ~~i~~~~d~i-----------------------------~~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 303 (305)
T PRK14264 260 QQAARISDQT-----------------------------AVFLTGGELVEYDDTDKIFENPESQRVEDYITGK 303 (305)
T ss_pred HHHHHhcCEE-----------------------------EEEecCCEEEEeCCHHHHHhCcccHHHHHHhccc
Confidence 9999999975 14679999999998888754 3456777777653
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-48 Score=403.78 Aligned_cols=220 Identities=21% Similarity=0.324 Sum_probs=191.9
Q ss_pred EEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEe
Q 016804 94 CRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVF 173 (382)
Q Consensus 94 ~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~ 173 (382)
++||+++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.... .....+.+++|+|
T Consensus 1 ~~nl~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~-~~~~~~~~i~~v~ 79 (491)
T PRK10982 1 MSNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKS-SKEALENGISMVH 79 (491)
T ss_pred CCceEEEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCC-HHHHHhCCEEEEe
Confidence 478999999889999999999999999999999999999999999999999999999999875422 1112233699999
Q ss_pred cCCCCCCCCCHHHHHHhhHhhcCC--CCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCC
Q 016804 174 QSAALFDSLTVRENVGFLLYENSK--MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (382)
Q Consensus 174 Q~~~l~~~lTV~eni~~~~~~~~~--~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~ 251 (382)
|++.+++.+||+||+.++.....+ .+..+..+++.++++.+++....++++.+|||||||||+|||||+. +
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~-------~ 152 (491)
T PRK10982 80 QELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSY-------N 152 (491)
T ss_pred cccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHh-------C
Confidence 999999899999999876421111 1334445678899999999988899999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccC
Q 016804 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAV 331 (382)
Q Consensus 252 P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~ 331 (382)
|++|||||||+|||+.++..+.++|++++++| .|+|++|||++++..+|||+
T Consensus 153 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g----------~tvii~tH~~~~~~~~~d~i------------------ 204 (491)
T PRK10982 153 AKIVIMDEPTSSLTEKEVNHLFTIIRKLKERG----------CGIVYISHKMEEIFQLCDEI------------------ 204 (491)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC----------CEEEEEecCHHHHHHhCCEE------------------
Confidence 99999999999999999999999999998766 59999999999999999988
Q ss_pred CCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 332 APDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 332 ~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.|+++++.
T Consensus 205 ------------~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 205 ------------TILRDGQWIATQPLAGLT 222 (491)
T ss_pred ------------EEEECCEEEeecChhhCC
Confidence 999999999999877753
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-48 Score=369.04 Aligned_cols=235 Identities=28% Similarity=0.469 Sum_probs=196.6
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEECCCCCC--hh
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLIS--DE 162 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p-----~sG~I~i~G~~i~~~~~--~~ 162 (382)
.+|+++||+++|+++++|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|+++|.++..... ..
T Consensus 15 ~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~ 94 (265)
T PRK14252 15 QKSEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDP 94 (265)
T ss_pred ceEEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCH
Confidence 469999999999988999999999999999999999999999999999999975 79999999986531101 11
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCC-HHHHHHHHHHHHHHcCCc----ccccCCCCCCChHHHHHHHH
Q 016804 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMR-DEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVAL 237 (382)
Q Consensus 163 ~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~-~~~~~~~v~~~L~~~gL~----~~~~~~~~~LSGGqrQRVaI 237 (382)
...+.+|+|+||++.+|+. |++||+.++.... +.. ....++.+.++++.+++. +..++.+.+|||||||||+|
T Consensus 95 ~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~l 172 (265)
T PRK14252 95 IEVRMRISMVFQKPNPFPK-SIFENVAYGLRIR-GVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCI 172 (265)
T ss_pred HHHhccEEEEccCCcCCcc-hHHHHHHhHHHHc-CCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHH
Confidence 1123369999999999985 9999998765322 222 223345677888888873 45678899999999999999
Q ss_pred HHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccc
Q 016804 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQ 317 (382)
Q Consensus 238 ArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~ 317 (382)
||||+. +|++|||||||+|||+.++..+.+.|+++++ + .|+|+|||+++++..+|||+
T Consensus 173 aral~~-------~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~----------~tiiivth~~~~~~~~~d~i---- 230 (265)
T PRK14252 173 ARALAT-------DPEILLFDEPTSALDPIATASIEELISDLKN-K----------VTILIVTHNMQQAARVSDYT---- 230 (265)
T ss_pred HHHHHc-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-C----------CEEEEEecCHHHHHHhCCEE----
Confidence 999997 6999999999999999999999999999975 3 49999999999999999988
Q ss_pred ccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 318 IFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
++|++|++++.|+.+++. .+.++.+.+|+.+
T Consensus 231 --------------------------~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 262 (265)
T PRK14252 231 --------------------------AYMYMGELIEFGATDTIFIKPKNKQTEDYITG 262 (265)
T ss_pred --------------------------EEEECCEEEEeCCHHHHHhCCCCHHHHHHHhh
Confidence 999999999999887765 4557788887765
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-48 Score=402.36 Aligned_cols=222 Identities=24% Similarity=0.422 Sum_probs=192.0
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC--CccEEEECCEECCCCCChhhhccce
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP--DKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p--~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
+|+++||+++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++.... .....+.+
T Consensus 1 ~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~-~~~~~~~~ 79 (500)
T TIGR02633 1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASN-IRDTERAG 79 (500)
T ss_pred CEEEEeEEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCC-HHHHHhCC
Confidence 48999999999988999999999999999999999999999999999999997 7999999999875432 22222346
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhc-C--CCCHHHHHHHHHHHHHHcCCcccc-cCCCCCCChHHHHHHHHHHHHhcC
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYEN-S--KMRDEQISELVKENLAAVGLKGVE-DRLPSELSGGMKKRVALARSIIFD 244 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~-~--~~~~~~~~~~v~~~L~~~gL~~~~-~~~~~~LSGGqrQRVaIArAL~~~ 244 (382)
||||||++.+++.+||+||+.++.... . ....++..+++.++++.+++.+.. ++++.+|||||||||+|||||+.
T Consensus 80 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~- 158 (500)
T TIGR02633 80 IVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNK- 158 (500)
T ss_pred EEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhh-
Confidence 999999999999999999998864221 1 123344556788999999998654 67899999999999999999997
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchh
Q 016804 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDV 324 (382)
Q Consensus 245 ~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~ 324 (382)
+|++|||||||+|||+.++..+.++|++++++| .|||+||||++++..+|||+
T Consensus 159 ------~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g----------~tviiitHd~~~~~~~~d~i----------- 211 (500)
T TIGR02633 159 ------QARLLILDEPSSSLTEKETEILLDIIRDLKAHG----------VACVYISHKLNEVKAVCDTI----------- 211 (500)
T ss_pred ------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCcHHHHHHhCCEE-----------
Confidence 699999999999999999999999999998766 59999999999999999988
Q ss_pred eehhccCCCCcccccccEEEEEeCCeEEEEeccccc
Q 016804 325 VIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEF 360 (382)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~ 360 (382)
++|++|++++.|.+.++
T Consensus 212 -------------------~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 212 -------------------CVIRDGQHVATKDMSTM 228 (500)
T ss_pred -------------------EEEeCCeEeeecCcccC
Confidence 99999999998877654
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-48 Score=407.18 Aligned_cols=258 Identities=25% Similarity=0.418 Sum_probs=206.0
Q ss_pred hhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCcceEEEEeEEEEeCC--eeeeEeeeEE
Q 016804 36 SFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRNVYKSFGE--KHILRGVSFK 113 (382)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvs~~yg~--~~iL~~vsl~ 113 (382)
..........+|+......|+....... . ........|+++||+|+|++ +++|+|+||+
T Consensus 302 ~~~~~~~~s~~ri~~ll~~~~~~~~~~~-------~------------~~~~~~~~i~~~~v~f~y~~~~~~il~~i~~~ 362 (574)
T PRK11160 302 QHLGQVIASARRINEITEQKPEVTFPTT-------S------------TAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQ 362 (574)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCcc-------c------------CCCCCCCeEEEEEEEEECCCCCCcceecceEE
Confidence 4556677788899888877642110000 0 00011234999999999964 4699999999
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhHh
Q 016804 114 IRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLY 193 (382)
Q Consensus 114 i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~ 193 (382)
|++||+++|+||||||||||+++|+|+++|++|+|++||+++........ +.+|+||+|++.+|+. |++||+.++..
T Consensus 363 i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~--r~~i~~v~Q~~~lf~~-ti~~Ni~~~~~ 439 (574)
T PRK11160 363 IKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAAL--RQAISVVSQRVHLFSA-TLRDNLLLAAP 439 (574)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHH--HhheeEEcccchhhcc-cHHHHhhcCCC
Confidence 99999999999999999999999999999999999999999876533332 3369999999999984 99999988531
Q ss_pred hcCCCCHHHHHHHHHHHHHHcCCcccccC----------CCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCC
Q 016804 194 ENSKMRDEQISELVKENLAAVGLKGVEDR----------LPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAG 263 (382)
Q Consensus 194 ~~~~~~~~~~~~~v~~~L~~~gL~~~~~~----------~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtag 263 (382)
.. .++++.++++.++++++.++ ....||||||||++|||||++ +|++|||||||++
T Consensus 440 ---~~----~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~-------~~~ililDE~ts~ 505 (574)
T PRK11160 440 ---NA----SDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLH-------DAPLLLLDEPTEG 505 (574)
T ss_pred ---cc----CHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhc-------CCCEEEEeCCccc
Confidence 12 23457788999999887766 346799999999999999997 5999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccCCCCcccccccEE
Q 016804 264 LDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRL 343 (382)
Q Consensus 264 LD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 343 (382)
||+.+++.+.+.|.++.+ + +|+|+|||+++.+.. ||+|
T Consensus 506 lD~~t~~~i~~~l~~~~~-~----------~tviiitHr~~~~~~-~d~i------------------------------ 543 (574)
T PRK11160 506 LDAETERQILELLAEHAQ-N----------KTVLMITHRLTGLEQ-FDRI------------------------------ 543 (574)
T ss_pred CCHHHHHHHHHHHHHHcC-C----------CEEEEEecChhHHHh-CCEE------------------------------
Confidence 999999999999999864 3 499999999999865 7766
Q ss_pred EEEeCCeEEEEecccccccCCCHHHHHHH
Q 016804 344 IFLYEGKIVWQGMTHEFTSSSNPIVQQFA 372 (382)
Q Consensus 344 i~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 372 (382)
++|++|++++.|+.+|+... ++...+++
T Consensus 544 ~~l~~G~i~~~g~~~~l~~~-~g~y~~l~ 571 (574)
T PRK11160 544 CVMDNGQIIEQGTHQELLAQ-QGRYYQLK 571 (574)
T ss_pred EEEeCCeEEEeCCHHHHHhc-CcHHHHHH
Confidence 99999999999977776644 34444443
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-48 Score=418.88 Aligned_cols=274 Identities=28% Similarity=0.427 Sum_probs=212.3
Q ss_pred cccchhhHhHhhHHhhhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCC
Q 016804 5 SSSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEP 84 (382)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (382)
+......+......+++++..+.+.. ..........+|+.+....++....... ..+
T Consensus 416 t~G~lva~~~~~~~l~~~l~~l~~~~-----~~~~~~~~a~~ri~~~l~~~~~~~~~~~------------------~~~ 472 (711)
T TIGR00958 416 SSGNLVSFLLYQEQLGEAVRVLSYVY-----SGMMQAVGASEKVFEYLDRKPNIPLTGT------------------LAP 472 (711)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhCCCCCCCCCCC------------------CCC
Confidence 33444555555566677777766666 6677788888999888776643211000 001
Q ss_pred CCCCcceEEEEeEEEEeCC---eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCCh
Q 016804 85 EDDGDVLIDCRNVYKSFGE---KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD 161 (382)
Q Consensus 85 ~~~~~~~I~~~nvs~~yg~---~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~ 161 (382)
. .....|+++||+|+|++ +++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|++||+++..+...
T Consensus 473 ~-~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~ 551 (711)
T TIGR00958 473 L-NLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHH 551 (711)
T ss_pred C-CCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHH
Confidence 1 11224999999999964 4699999999999999999999999999999999999999999999999998765332
Q ss_pred hhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChH
Q 016804 162 EEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGG 230 (382)
Q Consensus 162 ~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGG 230 (382)
. . +.+|+||+|++.+|+ .|++|||.++.. ..+ ++++.++++.++++++.++.| .+||||
T Consensus 552 ~-l-r~~i~~v~Q~~~lF~-gTIreNI~~g~~---~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGG 621 (711)
T TIGR00958 552 Y-L-HRQVALVGQEPVLFS-GSVRENIAYGLT---DTP----DEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGG 621 (711)
T ss_pred H-H-HhhceEEecCccccc-cCHHHHHhcCCC---CCC----HHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHH
Confidence 2 2 236999999999997 599999988531 122 344667888888876655543 579999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhh
Q 016804 231 MKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAV 310 (382)
Q Consensus 231 qrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~a 310 (382)
||||++|||||++ +|+|||||||||+||+++++.+++ .. ..++ +|+|+|||+++.+.. |
T Consensus 622 QkQRlalARALl~-------~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~----------~TvIiItHrl~~i~~-a 680 (711)
T TIGR00958 622 QKQRIAIARALVR-------KPRVLILDEATSALDAECEQLLQE-SR--SRAS----------RTVLLIAHRLSTVER-A 680 (711)
T ss_pred HHHHHHHHHHHhc-------CCCEEEEEccccccCHHHHHHHHH-hh--ccCC----------CeEEEEeccHHHHHh-C
Confidence 9999999999997 599999999999999999998888 22 1233 599999999998865 6
Q ss_pred chhccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccC
Q 016804 311 DRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSS 363 (382)
Q Consensus 311 Drv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~ 363 (382)
|+| ++|++|+|+++|+.+|+...
T Consensus 681 D~I------------------------------ivL~~G~ive~Gt~~eL~~~ 703 (711)
T TIGR00958 681 DQI------------------------------LVLKKGSVVEMGTHKQLMED 703 (711)
T ss_pred CEE------------------------------EEEECCEEEEeeCHHHHHhC
Confidence 766 99999999999977776543
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-48 Score=361.50 Aligned_cols=213 Identities=28% Similarity=0.498 Sum_probs=183.2
Q ss_pred eEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC---CCccEEEECCEECCCCCChhh
Q 016804 91 LIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA---PDKGEVYIRGRKRAGLISDEE 163 (382)
Q Consensus 91 ~I~~~nvs~~yg~----~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~---p~sG~I~i~G~~i~~~~~~~~ 163 (382)
.+.++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.. ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~----~~ 78 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP----DQ 78 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECCh----HH
Confidence 4679999999964 579999999999999999999999999999999999999 999999999998631 11
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhHhhcC--CCCHHHHHHHHHH-HHHHcCCcccccCCCCCCChHHHHHHHHHHH
Q 016804 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENS--KMRDEQISELVKE-NLAAVGLKGVEDRLPSELSGGMKKRVALARS 240 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~--~~~~~~~~~~v~~-~L~~~gL~~~~~~~~~~LSGGqrQRVaIArA 240 (382)
.+.+|+|+||++.+|+.+|+.||+.+...... ........+.+.+ .++.+++++..++.+.+||||||||++||||
T Consensus 79 -~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~lara 157 (226)
T cd03234 79 -FQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQ 157 (226)
T ss_pred -hcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHH
Confidence 23469999999999999999999998653221 1112222234455 8999999988899999999999999999999
Q ss_pred HhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCH-HHHHHhhchhcccccc
Q 016804 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQH-STIRRAVDRLCLFQIF 319 (382)
Q Consensus 241 L~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl-~~~~~~aDrv~~~~~~ 319 (382)
|+. +|++|||||||+|||+.++..+.++|+++.+++ .|+|++||++ +++.++||++
T Consensus 158 l~~-------~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~----------~tiii~sh~~~~~~~~~~d~i------ 214 (226)
T cd03234 158 LLW-------DPKVLILDEPTSGLDSFTALNLVSTLSQLARRN----------RIVILTIHQPRSDLFRLFDRI------ 214 (226)
T ss_pred HHh-------CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCC----------CEEEEEecCCCHHHHHhCCEE------
Confidence 997 599999999999999999999999999997765 5999999998 6899999988
Q ss_pred ccchheehhccCCCCcccccccEEEEEeCCeEEEEe
Q 016804 320 GHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQG 355 (382)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g 355 (382)
++|++|++++.|
T Consensus 215 ------------------------~~l~~G~i~~~g 226 (226)
T cd03234 215 ------------------------LLLSSGEIVYSG 226 (226)
T ss_pred ------------------------EEEeCCEEEecC
Confidence 999999998765
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-48 Score=365.00 Aligned_cols=207 Identities=30% Similarity=0.534 Sum_probs=178.2
Q ss_pred EEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEe-cCCC
Q 016804 99 KSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVF-QSAA 177 (382)
Q Consensus 99 ~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~-Q~~~ 177 (382)
++|+.+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... . .. .+.+++|++ |++.
T Consensus 29 ~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~-~~-~~~~i~~~~~~~~~ 105 (236)
T cd03267 29 RKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-R-KK-FLRRIGVVFGQKTQ 105 (236)
T ss_pred cccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-c-hh-hcccEEEEcCCccc
Confidence 566778899999999999999999999999999999999999999999999999875321 1 11 223699998 5577
Q ss_pred CCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEE
Q 016804 178 LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLY 257 (382)
Q Consensus 178 l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLL 257 (382)
+++.+|++||+.+.... .+...++..+.+.++++.+|+.+..++++.+||||||||++|||||+. +|++|||
T Consensus 106 ~~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~-------~p~llll 177 (236)
T cd03267 106 LWWDLPVIDSFYLLAAI-YDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLH-------EPEILFL 177 (236)
T ss_pred cCCCCcHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhc-------CCCEEEE
Confidence 88889999999875432 223444556677889999999988899999999999999999999997 6999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccCCCCccc
Q 016804 258 DEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEV 337 (382)
Q Consensus 258 DEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~ 337 (382)
||||++||+.+++.+.++|++++++++ .|+|++||+++++.++||++
T Consensus 178 DEPt~~LD~~~~~~l~~~l~~~~~~~~---------~tiiivsH~~~~~~~~~d~i------------------------ 224 (236)
T cd03267 178 DEPTIGLDVVAQENIRNFLKEYNRERG---------TTVLLTSHYMKDIEALARRV------------------------ 224 (236)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCC---------CEEEEEecCHHHHHHhCCEE------------------------
Confidence 999999999999999999999976521 59999999999999999988
Q ss_pred ccccEEEEEeCCeEEEEe
Q 016804 338 FFIYRLIFLYEGKIVWQG 355 (382)
Q Consensus 338 ~~~~~ii~l~~G~i~~~g 355 (382)
++|++|++++.|
T Consensus 225 ------~~l~~G~i~~~g 236 (236)
T cd03267 225 ------LVIDKGRLLYDG 236 (236)
T ss_pred ------EEEeCCEEEecC
Confidence 999999998764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-48 Score=357.81 Aligned_cols=206 Identities=30% Similarity=0.407 Sum_probs=180.2
Q ss_pred CCCCCcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhh
Q 016804 84 PEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE 163 (382)
Q Consensus 84 ~~~~~~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~ 163 (382)
|...++++|+++|++++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... .
T Consensus 4 ~~~~~~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~----~ 79 (214)
T PRK13543 4 PLHTAPPLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG----D 79 (214)
T ss_pred CCCCCcceEEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch----h
Confidence 344556789999999999988899999999999999999999999999999999999999999999999986431 1
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhc
Q 016804 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIF 243 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~ 243 (382)
.+..++|++|++.+++.+|++||+.+..... +. ...+.+.++++.+++.+..++++.+||||||||++|||||+.
T Consensus 80 -~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~-~~---~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 154 (214)
T PRK13543 80 -RSRFMAYLGHLPGLKADLSTLENLHFLCGLH-GR---RAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLS 154 (214)
T ss_pred -hhhceEEeecCcccccCCcHHHHHHHHHHhc-CC---cHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhc
Confidence 1235999999999998899999998764321 11 123456788999999988899999999999999999999997
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcc
Q 016804 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCL 315 (382)
Q Consensus 244 ~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~ 315 (382)
+|++|||||||++||+.+++.+.+.|+++.+++ .|+|++|||++++.++|||+++
T Consensus 155 -------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tiii~sH~~~~~~~~~~~i~~ 209 (214)
T PRK13543 155 -------PAPLWLLDEPYANLDLEGITLVNRMISAHLRGG----------GAALVTTHGAYAAPPVRTRMLT 209 (214)
T ss_pred -------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCC----------CEEEEEecChhhhhhhcceEEE
Confidence 599999999999999999999999999998776 5999999999999999998833
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-48 Score=366.06 Aligned_cols=217 Identities=30% Similarity=0.540 Sum_probs=179.0
Q ss_pred EEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 92 IDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 92 I~~~nvs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
|+++||+++|++ +++|+++||++++||+++|+||||||||||+++|+|+++|++|+|+++|+++... ..... +.+|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~-~~~i 78 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALA-DPAWL-RRQV 78 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhc-CHHHH-hhcE
Confidence 478999999963 5799999999999999999999999999999999999999999999999986532 22222 3369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHH-----HHHHHHHHc--CCcccccCCCCCCChHHHHHHHHHHHHh
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISE-----LVKENLAAV--GLKGVEDRLPSELSGGMKKRVALARSII 242 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~-----~v~~~L~~~--gL~~~~~~~~~~LSGGqrQRVaIArAL~ 242 (382)
+|+||++.+|+ .||.||+.+... ........+ .+.++++.+ ++....++++.+|||||||||+|||||+
T Consensus 79 ~~~~q~~~~~~-~tv~~nl~~~~~---~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~ 154 (237)
T cd03252 79 GVVLQENVLFN-RSIRDNIALADP---GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALI 154 (237)
T ss_pred EEEcCCchhcc-chHHHHhhccCC---CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHh
Confidence 99999998886 699999987431 112222111 123344554 5566667889999999999999999999
Q ss_pred cCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccc
Q 016804 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHI 322 (382)
Q Consensus 243 ~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~ 322 (382)
. +|++|||||||++||+.++..+.+.|+++.+ | .|+|++|||++++. .||++
T Consensus 155 ~-------~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~----------~tiii~sH~~~~~~-~~d~v--------- 206 (237)
T cd03252 155 H-------NPRILIFDEATSALDYESEHAIMRNMHDICA-G----------RTVIIIAHRLSTVK-NADRI--------- 206 (237)
T ss_pred h-------CCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-C----------CEEEEEeCCHHHHH-hCCEE---------
Confidence 7 6999999999999999999999999999964 5 59999999999985 58877
Q ss_pred hheehhccCCCCcccccccEEEEEeCCeEEEEecccccccC
Q 016804 323 DVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSS 363 (382)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~ 363 (382)
++|++|++++.|+++++...
T Consensus 207 ---------------------~~l~~G~i~~~~~~~~~~~~ 226 (237)
T cd03252 207 ---------------------IVMEKGRIVEQGSHDELLAE 226 (237)
T ss_pred ---------------------EEEECCEEEEEcCHHHHHhc
Confidence 99999999999988777644
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-48 Score=370.04 Aligned_cols=218 Identities=27% Similarity=0.396 Sum_probs=184.8
Q ss_pred eEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 91 LIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 91 ~I~~~nvs~~yg-~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
+|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. ...+.++
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~-----~~~~~~i 80 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ-----ALQKNLV 80 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH-----hhccceE
Confidence 599999999995 5789999999999999999999999999999999999999999999999998531 1122359
Q ss_pred EEEecCCCCC--CCCCHHHHHHhhHhhcC---CCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcC
Q 016804 170 GLVFQSAALF--DSLTVRENVGFLLYENS---KMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFD 244 (382)
Q Consensus 170 g~V~Q~~~l~--~~lTV~eni~~~~~~~~---~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~ 244 (382)
+|+||++.++ ...++++|+.++..... ........+++.++++.+||.+..++++.+||||||||++|||||+.
T Consensus 81 ~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~- 159 (272)
T PRK15056 81 AYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQ- 159 (272)
T ss_pred EEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhc-
Confidence 9999998652 23478898865421110 11122334567889999999988999999999999999999999997
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchh
Q 016804 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDV 324 (382)
Q Consensus 245 ~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~ 324 (382)
+|++|||||||+|||+.++..+.++|++++++| .|+|++|||++++..+||++
T Consensus 160 ------~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g----------~tviivsH~~~~~~~~~d~v----------- 212 (272)
T PRK15056 160 ------QGQVILLDEPFTGVDVKTEARIISLLRELRDEG----------KTMLVSTHNLGSVTEFCDYT----------- 212 (272)
T ss_pred ------CCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHhCCEE-----------
Confidence 699999999999999999999999999998765 59999999999999999977
Q ss_pred eehhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 325 VIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
+++ +|++++.|+++++.
T Consensus 213 -------------------~~~-~G~i~~~g~~~~~~ 229 (272)
T PRK15056 213 -------------------VMV-KGTVLASGPTETTF 229 (272)
T ss_pred -------------------EEE-CCEEEeecCHHhcc
Confidence 777 89999999887764
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-48 Score=362.49 Aligned_cols=216 Identities=32% Similarity=0.530 Sum_probs=180.8
Q ss_pred EEEEeEEEEeCCe--eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 92 IDCRNVYKSFGEK--HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 92 I~~~nvs~~yg~~--~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
|+++|++++|+++ ++|+++||++++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... .... +.+|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~-~~~~-~~~i 78 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYT-LASL-RRQI 78 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCC-HHHH-HhhE
Confidence 4789999999765 7999999999999999999999999999999999999999999999999865422 1222 3369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHH-----HHHHHHHHc--CCcccccCCCCCCChHHHHHHHHHHHHh
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISE-----LVKENLAAV--GLKGVEDRLPSELSGGMKKRVALARSII 242 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~-----~v~~~L~~~--gL~~~~~~~~~~LSGGqrQRVaIArAL~ 242 (382)
+|+||++.+|+ .|++||+.+.... ....+..+ .+.++++.+ ++....++++.+||||||||++|||||+
T Consensus 79 ~~~~q~~~~~~-~tv~enl~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~ 154 (234)
T cd03251 79 GLVSQDVFLFN-DTVAENIAYGRPG---ATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALL 154 (234)
T ss_pred EEeCCCCeecc-ccHHHHhhccCCC---CCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHh
Confidence 99999999987 6999999875321 12222221 234555665 6777778889999999999999999999
Q ss_pred cCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccc
Q 016804 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHI 322 (382)
Q Consensus 243 ~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~ 322 (382)
. +|++|||||||++||+.++..+.+.|+++.+ + .|||++||+++++.. ||++
T Consensus 155 ~-------~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~----------~tii~~sh~~~~~~~-~d~v--------- 206 (234)
T cd03251 155 K-------DPPILILDEATSALDTESERLVQAALERLMK-N----------RTTFVIAHRLSTIEN-ADRI--------- 206 (234)
T ss_pred c-------CCCEEEEeCccccCCHHHHHHHHHHHHHhcC-C----------CEEEEEecCHHHHhh-CCEE---------
Confidence 7 6999999999999999999999999999964 4 499999999999976 8877
Q ss_pred hheehhccCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 323 DVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|++++.|+++++..
T Consensus 207 ---------------------~~l~~G~i~~~~~~~~~~~ 225 (234)
T cd03251 207 ---------------------VVLEDGKIVERGTHEELLA 225 (234)
T ss_pred ---------------------EEecCCeEeeeCCHHHHHH
Confidence 9999999999997777653
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-48 Score=359.61 Aligned_cols=237 Identities=29% Similarity=0.458 Sum_probs=206.2
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
||+.+|++++..++.+|++|||++++||++||+||||||||||||.|+|-+.|++|++.++|.++..+... ...+ +-+
T Consensus 1 mi~a~nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~-~lA~-~ra 78 (259)
T COG4559 1 MIRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPE-ELAR-HRA 78 (259)
T ss_pred CeeeeeeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHH-HHHH-Hhh
Confidence 68999999999999999999999999999999999999999999999999999999999999998876433 3332 468
Q ss_pred EEecCCCC-CCCCCHHHHHHhhHhhcCC-CCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 016804 171 LVFQSAAL-FDSLTVRENVGFLLYENSK-MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (382)
Q Consensus 171 ~V~Q~~~l-~~~lTV~eni~~~~~~~~~-~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~ 248 (382)
.+||+..+ || .||.|-+.++...+.. ....+..+.++++|.++++..+..+...+|||||||||.+||.|++-|+..
T Consensus 79 VlpQ~s~laFp-Ftv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v 157 (259)
T COG4559 79 VLPQNSSLAFP-FTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPV 157 (259)
T ss_pred hcccCcccccc-eEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCC
Confidence 99999887 65 7999999998765533 223355566889999999999999999999999999999999999866544
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehh
Q 016804 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIIL 328 (382)
Q Consensus 249 a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~ 328 (382)
. ++++|+||||||+||+..+..++++.++++++| ..|+.|-||++.+..|||||
T Consensus 158 ~-~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g----------~~V~~VLHDLNLAA~YaDri--------------- 211 (259)
T COG4559 158 P-SGRWLFLDEPTSALDIAHQHHTLRLARQLAREG----------GAVLAVLHDLNLAAQYADRI--------------- 211 (259)
T ss_pred C-CCceEEecCCccccchHHHHHHHHHHHHHHhcC----------CcEEEEEccchHHHHhhhee---------------
Confidence 3 457999999999999999999999999999987 48999999999999999988
Q ss_pred ccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHHc
Q 016804 329 GAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFAS 373 (382)
Q Consensus 329 ~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 373 (382)
++|++||++..|++.++++. +.+.+.+.
T Consensus 212 ---------------vll~~Grv~a~g~p~~vlt~--Etl~~vyg 239 (259)
T COG4559 212 ---------------VLLHQGRVIASGSPQDVLTD--ETLERVYG 239 (259)
T ss_pred ---------------eeeeCCeEeecCCHHHhcCH--HHHHHHhC
Confidence 99999999999999998753 34444444
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=360.45 Aligned_cols=218 Identities=30% Similarity=0.497 Sum_probs=184.9
Q ss_pred eeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC----CccEEEECCEECCCCCChhhhccceEEEEecCCC--CC
Q 016804 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP----DKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAA--LF 179 (382)
Q Consensus 106 iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p----~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~--l~ 179 (382)
+|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|+++|+++... +..+.+|+|++|++. ++
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~----~~~~~~i~~~~q~~~~~~~ 76 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL----SIRGRHIATIMQNPRTAFN 76 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh----hhhhheeEEEecCchhhcC
Confidence 57899999999999999999999999999999999999 899999999986432 122236999999985 55
Q ss_pred CCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc---ccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEE
Q 016804 180 DSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK---GVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLL 256 (382)
Q Consensus 180 ~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~---~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLL 256 (382)
+.+|+++|+.+...... .......+++.++++.+++. +..++.+.+|||||||||+|||||+. +|+|||
T Consensus 77 ~~~t~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~-------~p~vll 148 (230)
T TIGR02770 77 PLFTMGNHAIETLRSLG-KLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLL-------EPPFLI 148 (230)
T ss_pred cccCHHHHHHHHHHHcC-ccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhc-------CCCEEE
Confidence 67899999977543221 22234456788999999998 56889999999999999999999997 699999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccCCCCc
Q 016804 257 YDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDK 335 (382)
Q Consensus 257 LDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~ 335 (382)
|||||+|||+.++..+.+.|++++++ + .|+|++||+++++..+|||+
T Consensus 149 LDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tiii~sH~~~~~~~~~d~i---------------------- 196 (230)
T TIGR02770 149 ADEPTTDLDVVNQARVLKLLRELRQLFG----------TGILLITHDLGVVARIADEV---------------------- 196 (230)
T ss_pred EcCCccccCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEE----------------------
Confidence 99999999999999999999999875 4 59999999999999999988
Q ss_pred ccccccEEEEEeCCeEEEEeccccccc-CCCHHHHHHHcCC
Q 016804 336 EVFFIYRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFASGS 375 (382)
Q Consensus 336 ~~~~~~~ii~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~~~ 375 (382)
++|++|++++.|+++++.. +......+++.+.
T Consensus 197 --------~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (230)
T TIGR02770 197 --------AVMDDGRIVERGTVKEIFYNPKHETTRKLLSAH 229 (230)
T ss_pred --------EEEECCEEEEeCCHHHHHhCcCCHHHHHHHHhc
Confidence 9999999999998888753 4566666776543
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-47 Score=361.64 Aligned_cols=220 Identities=28% Similarity=0.430 Sum_probs=183.0
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC--CCCccEEEECCEECCCCCChhhhccce
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL--APDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~--~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
||+++||+++|+++++|+++||+|++||+++|+||||||||||+++|+|+. +|++|+|.++|+++.... .....+..
T Consensus 1 ~i~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~-~~~~~~~~ 79 (248)
T PRK09580 1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELS-PEDRAGEG 79 (248)
T ss_pred CeEEEEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCC-HHHHhhcc
Confidence 589999999999888999999999999999999999999999999999995 699999999998765432 22222235
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhh---cCC---CCHHHHHHHHHHHHHHcCCc-ccccCCCC-CCChHHHHHHHHHHH
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYE---NSK---MRDEQISELVKENLAAVGLK-GVEDRLPS-ELSGGMKKRVALARS 240 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~---~~~---~~~~~~~~~v~~~L~~~gL~-~~~~~~~~-~LSGGqrQRVaIArA 240 (382)
++|++|++.+++.+|+.+++.+.... ... .......+.+.++++.+++. +..++.+. +|||||||||+||||
T Consensus 80 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~lara 159 (248)
T PRK09580 80 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQM 159 (248)
T ss_pred eEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHH
Confidence 99999999988877877776543211 000 12223456678899999994 56677775 899999999999999
Q ss_pred HhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHh-hchhcccccc
Q 016804 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA-VDRLCLFQIF 319 (382)
Q Consensus 241 L~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~-aDrv~~~~~~ 319 (382)
|++ +|++|||||||++||+.++..+.++|+++++++ .|||++|||++++..+ ||++
T Consensus 160 l~~-------~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~----------~tiii~sH~~~~~~~~~~d~i------ 216 (248)
T PRK09580 160 AVL-------EPELCILDESDSGLDIDALKIVADGVNSLRDGK----------RSFIIVTHYQRILDYIKPDYV------ 216 (248)
T ss_pred HHc-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHhhhCCEE------
Confidence 997 599999999999999999999999999998765 5999999999999887 7877
Q ss_pred ccchheehhccCCCCcccccccEEEEEeCCeEEEEeccc
Q 016804 320 GHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTH 358 (382)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~ 358 (382)
++|++|++++.|+++
T Consensus 217 ------------------------~~l~~g~i~~~g~~~ 231 (248)
T PRK09580 217 ------------------------HVLYQGRIVKSGDFT 231 (248)
T ss_pred ------------------------EEEECCeEEEeCCHH
Confidence 999999999999654
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-48 Score=353.46 Aligned_cols=199 Identities=35% Similarity=0.582 Sum_probs=182.9
Q ss_pred eEEEEeEEEEeCCee--eeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 91 LIDCRNVYKSFGEKH--ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~--iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
++.+++++.+|++++ +|+|||++|.+||+++++||||||||||||+++|+.+|+.|+|.+||+.+.... . .
T Consensus 3 ~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPg--a-----e 75 (259)
T COG4525 3 MLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPG--A-----E 75 (259)
T ss_pred eeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCC--c-----c
Confidence 577899999998877 999999999999999999999999999999999999999999999999886521 1 2
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~ 248 (382)
-|.|||++.|+|.+|+.||++|++. ..++.+.+..+++.+.+..+||.+..++++.+|||||||||.|||||+.
T Consensus 76 rgvVFQ~~~LlPWl~~~dNvafgL~-l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~----- 149 (259)
T COG4525 76 RGVVFQNEALLPWLNVIDNVAFGLQ-LRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAV----- 149 (259)
T ss_pred ceeEeccCccchhhHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhc-----
Confidence 4899999999999999999999985 4567888888899999999999999999999999999999999999986
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 249 a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|++|+||||+++||.-+++.++++|-++.++-+ +.+++||||++++.-+++|+
T Consensus 150 --eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tg---------k~~lliTH~ieEAlflatrL 203 (259)
T COG4525 150 --EPQLLLLDEPFGALDALTREQMQELLLDLWQETG---------KQVLLITHDIEEALFLATRL 203 (259)
T ss_pred --CcceEeecCchhhHHHHHHHHHHHHHHHHHHHhC---------CeEEEEeccHHHHHhhhhee
Confidence 6999999999999999999999999999876521 58999999999999999988
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-47 Score=404.56 Aligned_cols=215 Identities=27% Similarity=0.517 Sum_probs=180.6
Q ss_pred eEEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 91 LIDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 91 ~I~~~nvs~~yg~-~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
.|+++||+|+|++ +++|+|+||++++||.++|+|+||||||||+|+|+|+++|++|+|+++|.++....... . +.+|
T Consensus 334 ~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~-~-r~~i 411 (588)
T PRK13657 334 AVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRAS-L-RRNI 411 (588)
T ss_pred eEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHH-H-Hhhe
Confidence 4999999999975 57999999999999999999999999999999999999999999999999987653222 2 3369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCC-----------CCCCChHHHHHHHHH
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL-----------PSELSGGMKKRVALA 238 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~-----------~~~LSGGqrQRVaIA 238 (382)
+||||++.+|+ .|++||+.++. ...++ +++.++++.++++++.++. ...||||||||++||
T Consensus 412 ~~v~Q~~~lf~-~Ti~~Ni~~~~---~~~~d----~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialA 483 (588)
T PRK13657 412 AVVFQDAGLFN-RSIEDNIRVGR---PDATD----EEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIA 483 (588)
T ss_pred EEEecCccccc-ccHHHHHhcCC---CCCCH----HHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHH
Confidence 99999999997 59999998742 11232 3355667777766544443 357999999999999
Q ss_pred HHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccc
Q 016804 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQI 318 (382)
Q Consensus 239 rAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~ 318 (382)
|||++ +|+|||||||||+||+.+++.+++.|+++.+ + +|+|+|||+++.+. .||+|
T Consensus 484 Rall~-------~~~iliLDEpts~LD~~t~~~i~~~l~~~~~-~----------~tvIiitHr~~~~~-~~D~i----- 539 (588)
T PRK13657 484 RALLK-------DPPILILDEATSALDVETEAKVKAALDELMK-G----------RTTFIIAHRLSTVR-NADRI----- 539 (588)
T ss_pred HHHhc-------CCCEEEEeCCccCCCHHHHHHHHHHHHHHhc-C----------CEEEEEEecHHHHH-hCCEE-----
Confidence 99997 5999999999999999999999999998854 3 49999999998875 57766
Q ss_pred cccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCC
Q 016804 319 FGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSS 364 (382)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~ 364 (382)
++|++|++++.|+.+++....
T Consensus 540 -------------------------i~l~~G~i~~~g~~~~l~~~~ 560 (588)
T PRK13657 540 -------------------------LVFDNGRVVESGSFDELVARG 560 (588)
T ss_pred -------------------------EEEECCEEEEeCCHHHHHHCC
Confidence 999999999999777765443
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-48 Score=359.58 Aligned_cols=205 Identities=35% Similarity=0.550 Sum_probs=174.7
Q ss_pred EEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 92 IDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 92 I~~~nvs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.... .... +..+
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~-~~~~-~~~i 80 (220)
T cd03245 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLD-PADL-RRNI 80 (220)
T ss_pred EEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCC-HHHH-HhhE
Confidence 789999999975 56999999999999999999999999999999999999999999999999864321 1122 2369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChHHHHHHHHH
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVALA 238 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGGqrQRVaIA 238 (382)
+|+||++.+|+ .|+.||+.+... ... .+.+.++++.+++.+..+++| .+||||||||++||
T Consensus 81 ~~~~q~~~~~~-~tv~e~l~~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la 152 (220)
T cd03245 81 GYVPQDVTLFY-GTLRDNITLGAP---LAD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALA 152 (220)
T ss_pred EEeCCCCcccc-chHHHHhhcCCC---CCC----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHH
Confidence 99999999887 699999977431 111 234567788889887777655 69999999999999
Q ss_pred HHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccc
Q 016804 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQI 318 (382)
Q Consensus 239 rAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~ 318 (382)
|||+. +|++|||||||+|||+.++..+.++|++++++ .|+|++|||++.+ ++|||+
T Consensus 153 ~al~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-----------~tii~~sH~~~~~-~~~d~v----- 208 (220)
T cd03245 153 RALLN-------DPPILLLDEPTSAMDMNSEERLKERLRQLLGD-----------KTLIIITHRPSLL-DLVDRI----- 208 (220)
T ss_pred HHHhc-------CCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-----------CEEEEEeCCHHHH-HhCCEE-----
Confidence 99997 69999999999999999999999999998654 3999999999986 688877
Q ss_pred cccchheehhccCCCCcccccccEEEEEeCCeEEEEe
Q 016804 319 FGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQG 355 (382)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g 355 (382)
++|++|++++.|
T Consensus 209 -------------------------~~l~~g~i~~~~ 220 (220)
T cd03245 209 -------------------------IVMDSGRIVADG 220 (220)
T ss_pred -------------------------EEEeCCeEeecC
Confidence 999999998654
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-48 Score=403.83 Aligned_cols=285 Identities=25% Similarity=0.407 Sum_probs=221.8
Q ss_pred cccchhhHhHhhHHhhhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCC
Q 016804 5 SSSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEP 84 (382)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (382)
+......+...+..++.++..+.+.. ......+...+|+...+..++...... . +
T Consensus 269 t~g~l~a~~~~~~~~~~pl~~l~~~~-----~~~~~~~~~~~ri~~~l~~~~~~~~~~-~-------------------~ 323 (571)
T TIGR02203 269 TAGDFTAFITAMIALIRPLKSLTNVN-----APMQRGLAAAESLFTLLDSPPEKDTGT-R-------------------A 323 (571)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCCCCCCCC-C-------------------C
Confidence 33444555555666678887777776 667778888899988887664321100 0 0
Q ss_pred CCCCcceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChh
Q 016804 85 EDDGDVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE 162 (382)
Q Consensus 85 ~~~~~~~I~~~nvs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~ 162 (382)
.......|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.... ..
T Consensus 324 ~~~~~~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~-~~ 402 (571)
T TIGR02203 324 IERARGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYT-LA 402 (571)
T ss_pred CCCCCCeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcC-HH
Confidence 0011123999999999964 57999999999999999999999999999999999999999999999999987653 33
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChHH
Q 016804 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGM 231 (382)
Q Consensus 163 ~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGGq 231 (382)
+. +.+|+|+||++.+|+. |++|||.++.. ...+ ++++.++++.+|++++.++.| ..|||||
T Consensus 403 ~~-~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~--~~~~----~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq 474 (571)
T TIGR02203 403 SL-RRQVALVSQDVVLFND-TIANNIAYGRT--EQAD----RAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQ 474 (571)
T ss_pred HH-HhhceEEccCcccccc-cHHHHHhcCCC--CCCC----HHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHH
Confidence 32 3369999999999975 99999987421 1122 345677888888877665554 4699999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhc
Q 016804 232 KKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVD 311 (382)
Q Consensus 232 rQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aD 311 (382)
|||++|||||++ +|+||||||||++||+.+++.+++.|+++.++ +|+|+|||+.+.+. .||
T Consensus 475 rQRiaLARall~-------~~~illLDEpts~LD~~~~~~i~~~L~~~~~~-----------~tiIiitH~~~~~~-~~D 535 (571)
T TIGR02203 475 RQRLAIARALLK-------DAPILILDEATSALDNESERLVQAALERLMQG-----------RTTLVIAHRLSTIE-KAD 535 (571)
T ss_pred HHHHHHHHHHhc-------CCCEEEEeCccccCCHHHHHHHHHHHHHHhCC-----------CEEEEEehhhHHHH-hCC
Confidence 999999999997 59999999999999999999999999988543 49999999997764 577
Q ss_pred hhccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHHc
Q 016804 312 RLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFAS 373 (382)
Q Consensus 312 rv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 373 (382)
+| ++|++|++++.|+.+++... ++..+++..
T Consensus 536 ~i------------------------------i~l~~g~i~~~g~~~~l~~~-~~~~~~~~~ 566 (571)
T TIGR02203 536 RI------------------------------VVMDDGRIVERGTHNELLAR-NGLYAQLHN 566 (571)
T ss_pred EE------------------------------EEEeCCEEEeeCCHHHHHHc-CCHHHHHHH
Confidence 66 99999999999977776543 455555543
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-48 Score=400.08 Aligned_cols=226 Identities=23% Similarity=0.427 Sum_probs=192.6
Q ss_pred CcceEEEEeEEEEeC---CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-CCccEEEECCEECCCCCChhh
Q 016804 88 GDVLIDCRNVYKSFG---EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-PDKGEVYIRGRKRAGLISDEE 163 (382)
Q Consensus 88 ~~~~I~~~nvs~~yg---~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~-p~sG~I~i~G~~i~~~~~~~~ 163 (382)
+.++|+++||+++|+ ++++|+|+||+|++||++||+||||||||||+|+|+|+++ |++|+|+++|+++... ....
T Consensus 256 ~~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~-~~~~ 334 (506)
T PRK13549 256 GEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIR-NPQQ 334 (506)
T ss_pred CCceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCC-CHHH
Confidence 346899999999993 4679999999999999999999999999999999999999 5999999999987532 1211
Q ss_pred hccceEEEEecCC---CCCCCCCHHHHHHhhHhh-cCC---CCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHH
Q 016804 164 ISGLRIGLVFQSA---ALFDSLTVRENVGFLLYE-NSK---MRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRV 235 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~---~l~~~lTV~eni~~~~~~-~~~---~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRV 235 (382)
..+.+|+|+||++ .+++.+||.||+.++... ... .+..+..+++.++++.+++. +..++++.+|||||||||
T Consensus 335 ~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv 414 (506)
T PRK13549 335 AIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKA 414 (506)
T ss_pred HHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHH
Confidence 1233699999996 478889999999875421 111 12334456788999999996 578999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcc
Q 016804 236 ALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCL 315 (382)
Q Consensus 236 aIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~ 315 (382)
+|||||+. +|++|||||||+|||+.++..++++|++++++| .|||++|||++++.++|||+
T Consensus 415 ~lA~al~~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g----------~tvi~~sHd~~~~~~~~d~v-- 475 (506)
T PRK13549 415 VLAKCLLL-------NPKILILDEPTRGIDVGAKYEIYKLINQLVQQG----------VAIIVISSELPEVLGLSDRV-- 475 (506)
T ss_pred HHHHHHhh-------CCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCC----------CEEEEECCCHHHHHHhCCEE--
Confidence 99999997 699999999999999999999999999998776 59999999999999999988
Q ss_pred ccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 316 FQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|+++..|+++++.
T Consensus 476 ----------------------------~~l~~G~i~~~~~~~~~~ 493 (506)
T PRK13549 476 ----------------------------LVMHEGKLKGDLINHNLT 493 (506)
T ss_pred ----------------------------EEEECCEEEEEeccccCC
Confidence 999999999999877763
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=399.88 Aligned_cols=225 Identities=33% Similarity=0.518 Sum_probs=189.5
Q ss_pred CcceEEEEeEEEEeC-----CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEEC-CEE---CCCC
Q 016804 88 GDVLIDCRNVYKSFG-----EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR-GRK---RAGL 158 (382)
Q Consensus 88 ~~~~I~~~nvs~~yg-----~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~-G~~---i~~~ 158 (382)
..++|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++ |.+ +...
T Consensus 276 ~~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~ 355 (520)
T TIGR03269 276 GEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKP 355 (520)
T ss_pred CCceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCcccccccc
Confidence 356899999999994 2579999999999999999999999999999999999999999999996 642 2111
Q ss_pred CC-hhhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc-----cccCCCCCCChHHH
Q 016804 159 IS-DEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-----VEDRLPSELSGGMK 232 (382)
Q Consensus 159 ~~-~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~-----~~~~~~~~LSGGqr 232 (382)
.. .....+.+|||+||++.+|+.+||+||+.+.... ....+..++++.++++.++|.+ +.++++.+||||||
T Consensus 356 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~ 433 (520)
T TIGR03269 356 GPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGL--ELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGER 433 (520)
T ss_pred chhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHc--CCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHH
Confidence 10 0111123699999999999999999999875421 1233334567888999999974 57899999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhc
Q 016804 233 KRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVD 311 (382)
Q Consensus 233 QRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aD 311 (382)
|||+|||||+. +|+||||||||+|||+.+++.+.++|++++++ + .|||+||||++++.++||
T Consensus 434 qrv~laral~~-------~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g----------~tvi~vsHd~~~~~~~~d 496 (520)
T TIGR03269 434 HRVALAQVLIK-------EPRIVILDEPTGTMDPITKVDVTHSILKAREEME----------QTFIIVSHDMDFVLDVCD 496 (520)
T ss_pred HHHHHHHHHhc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcC----------cEEEEEeCCHHHHHHhCC
Confidence 99999999997 69999999999999999999999999999765 5 599999999999999999
Q ss_pred hhccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 312 RLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 312 rv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
|+ ++|++|++++.|++.++.
T Consensus 497 ~i------------------------------~~l~~G~i~~~g~~~~~~ 516 (520)
T TIGR03269 497 RA------------------------------ALMRDGKIVKIGDPEEIV 516 (520)
T ss_pred EE------------------------------EEEECCEEEEECCHHHHH
Confidence 88 999999999999776653
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=393.66 Aligned_cols=225 Identities=32% Similarity=0.479 Sum_probs=202.4
Q ss_pred CcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccc
Q 016804 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (382)
Q Consensus 88 ~~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~ 167 (382)
..++++++|++|+||+.++|++|||++.+||++||+|.||||||||+|+|+|.++||+|+|+++|+..... +..+....
T Consensus 5 ~~~ll~~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~-sp~~A~~~ 83 (500)
T COG1129 5 TPPLLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFS-SPRDALAA 83 (500)
T ss_pred ccceeeeecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCC-CHHHHHhC
Confidence 34689999999999999999999999999999999999999999999999999999999999999987643 34444455
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhHhhcC---CCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcC
Q 016804 168 RIGLVFQSAALFDSLTVRENVGFLLYENS---KMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFD 244 (382)
Q Consensus 168 ~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~---~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~ 244 (382)
.|+.|+|+.+|+|++||.||+.++..... ..++.+..+++.++|+.+++....+.++.+||.||||.|+|||||..
T Consensus 84 GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~- 162 (500)
T COG1129 84 GIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSF- 162 (500)
T ss_pred CcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhc-
Confidence 79999999999999999999987754322 25778889999999999999644899999999999999999999987
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchh
Q 016804 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDV 324 (382)
Q Consensus 245 ~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~ 324 (382)
+++|||||||||+|+....+.+++++++|+++| .++|+|||+|+++.++||||
T Consensus 163 ------~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~G----------v~ii~ISHrl~Ei~~i~Dri----------- 215 (500)
T COG1129 163 ------DARVLILDEPTAALTVKETERLFDLIRRLKAQG----------VAIIYISHRLDEVFEIADRI----------- 215 (500)
T ss_pred ------CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCC----------CEEEEEcCcHHHHHHhcCEE-----------
Confidence 599999999999999999999999999999988 69999999999999999988
Q ss_pred eehhccCCCCcccccccEEEEEeCCeEEEEecc-ccc
Q 016804 325 VIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMT-HEF 360 (382)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~-~~~ 360 (382)
.||++|+.+...+. .++
T Consensus 216 -------------------tVlRDG~~v~~~~~~~~~ 233 (500)
T COG1129 216 -------------------TVLRDGRVVGTRPTAAET 233 (500)
T ss_pred -------------------EEEeCCEEeeecccccCC
Confidence 89999999998873 554
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-47 Score=360.55 Aligned_cols=200 Identities=35% Similarity=0.559 Sum_probs=175.8
Q ss_pred eEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHH
Q 016804 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRE 186 (382)
Q Consensus 107 L~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~e 186 (382)
|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... .+.+|+||++.+|+.+|++|
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~-------~~~~~v~q~~~l~~~~tv~e 73 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG-------PDRMVVFQNYSLLPWLTVRE 73 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCC-------hhheEEecCcccCCCCCHHH
Confidence 57999999999999999999999999999999999999999999999864321 12589999999999899999
Q ss_pred HHHhhHhh-cCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCC
Q 016804 187 NVGFLLYE-NSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265 (382)
Q Consensus 187 ni~~~~~~-~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD 265 (382)
|+.+.... .......+..+++.++++.+|+.+..++++.+||||||||++|||||+. +|++|||||||+|||
T Consensus 74 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~-------~p~lllLDEPt~gLD 146 (230)
T TIGR01184 74 NIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSI-------RPKVLLLDEPFGALD 146 (230)
T ss_pred HHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHc-------CCCEEEEcCCCcCCC
Confidence 99886421 1223444556678899999999988999999999999999999999997 699999999999999
Q ss_pred HHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccCCCCcccccccEEE
Q 016804 266 PIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLI 344 (382)
Q Consensus 266 ~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii 344 (382)
+.++..+.+.|++++++ + .|+|++|||++++.++|||+ +
T Consensus 147 ~~~~~~l~~~l~~~~~~~~----------~tii~~sH~~~~~~~~~d~v------------------------------~ 186 (230)
T TIGR01184 147 ALTRGNLQEELMQIWEEHR----------VTVLMVTHDVDEALLLSDRV------------------------------V 186 (230)
T ss_pred HHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhcCEE------------------------------E
Confidence 99999999999999775 4 59999999999999999988 9
Q ss_pred EEeCCeEEEEeccccc
Q 016804 345 FLYEGKIVWQGMTHEF 360 (382)
Q Consensus 345 ~l~~G~i~~~g~~~~~ 360 (382)
+|++|+++..|...++
T Consensus 187 ~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 187 MLTNGPAANIGQILEV 202 (230)
T ss_pred EEeCCcEecccCceec
Confidence 9999999998866554
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-47 Score=356.45 Aligned_cols=205 Identities=32% Similarity=0.475 Sum_probs=174.1
Q ss_pred eEEEEeEEEEeCC-------eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEEC--CE--ECCCCC
Q 016804 91 LIDCRNVYKSFGE-------KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR--GR--KRAGLI 159 (382)
Q Consensus 91 ~I~~~nvs~~yg~-------~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~--G~--~i~~~~ 159 (382)
||+++||+++|+. +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++ |. ++....
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~ 80 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS 80 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcC
Confidence 5899999999962 479999999999999999999999999999999999999999999998 42 332211
Q ss_pred Chh--hhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc-cccCCCCCCChHHHHHHH
Q 016804 160 SDE--EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVA 236 (382)
Q Consensus 160 ~~~--~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~-~~~~~~~~LSGGqrQRVa 236 (382)
... ...+.+++|+||++.+++.+|++||+.+..... +.......+++.++++.+|+.+ ..++++.+||||||||++
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~ 159 (224)
T TIGR02324 81 PREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER-GVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVN 159 (224)
T ss_pred HHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHH
Confidence 111 111235999999999999999999998754322 2334445667888999999976 458899999999999999
Q ss_pred HHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 237 IArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
|||||+. +|++|||||||++||+.++..+.+.|++++++| .|+|++||+++++..+|||+
T Consensus 160 laral~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g----------~tii~vsH~~~~~~~~~d~i 219 (224)
T TIGR02324 160 IARGFIA-------DYPILLLDEPTASLDAANRQVVVELIAEAKARG----------AALIGIFHDEEVRELVADRV 219 (224)
T ss_pred HHHHHhc-------CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhccee
Confidence 9999997 699999999999999999999999999997765 59999999999999999988
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=399.83 Aligned_cols=222 Identities=32% Similarity=0.479 Sum_probs=188.8
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC--CCCccEEEECC-----------------
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL--APDKGEVYIRG----------------- 152 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~--~p~sG~I~i~G----------------- 152 (382)
|+++|++++|+++++|+|+||+|++||+++|+||||||||||+|+|+|++ +|++|+|+++|
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~ 80 (520)
T TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGE 80 (520)
T ss_pred CEEEEEEEEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccccc
Confidence 57899999999889999999999999999999999999999999999997 79999999972
Q ss_pred ------EECCC----CC--Chh--hhccceEEEEecC-CCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc
Q 016804 153 ------RKRAG----LI--SDE--EISGLRIGLVFQS-AALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK 217 (382)
Q Consensus 153 ------~~i~~----~~--~~~--~~~~~~Ig~V~Q~-~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~ 217 (382)
.++.. .. ... ...+.+++|+||+ +.+|+.+|++||+.++.... +.+..+..+++.++++.+||+
T Consensus 81 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~gl~ 159 (520)
T TIGR03269 81 PCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI-GYEGKEAVGRAVDLIEMVQLS 159 (520)
T ss_pred ccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCh
Confidence 22110 00 010 1112359999998 67888899999999865322 244455567789999999999
Q ss_pred ccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEE
Q 016804 218 GVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASY 296 (382)
Q Consensus 218 ~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~ti 296 (382)
+..++++.+|||||||||+|||||+. +|++|||||||++||+.++..+.++|+++.++ | .||
T Consensus 160 ~~~~~~~~~LSgGq~qrv~iA~al~~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g----------~tv 222 (520)
T TIGR03269 160 HRITHIARDLSGGEKQRVVLARQLAK-------EPFLFLADEPTGTLDPQTAKLVHNALEEAVKASG----------ISM 222 (520)
T ss_pred hhhhcCcccCCHHHHHHHHHHHHHhc-------CCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcC----------cEE
Confidence 88899999999999999999999997 69999999999999999999999999999764 5 599
Q ss_pred EEEccCHHHHHHhhchhccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 297 VVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 297 IivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
|+||||++.+.++|||+ ++|++|++++.|++.++.
T Consensus 223 iivtHd~~~~~~~~d~i------------------------------~~l~~G~i~~~g~~~~~~ 257 (520)
T TIGR03269 223 VLTSHWPEVIEDLSDKA------------------------------IWLENGEIKEEGTPDEVV 257 (520)
T ss_pred EEEeCCHHHHHHhcCEE------------------------------EEEeCCEEeeecCHHHHH
Confidence 99999999999999988 999999999988776653
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-47 Score=379.01 Aligned_cols=244 Identities=31% Similarity=0.518 Sum_probs=216.7
Q ss_pred CCCcceEEEEeEEEEeCC-----------eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEE
Q 016804 86 DDGDVLIDCRNVYKSFGE-----------KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154 (382)
Q Consensus 86 ~~~~~~I~~~nvs~~yg~-----------~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~ 154 (382)
.+..+.++.+||.+.|.- ..++++|||++++||.+||||.||||||||-++|.+|++++ |+|.|+|++
T Consensus 271 ~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~ 349 (534)
T COG4172 271 EDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQD 349 (534)
T ss_pred CCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCcc
Confidence 356678999999999941 25899999999999999999999999999999999999887 999999999
Q ss_pred CCCCCChhh-hccceEEEEecCCC--CCCCCCHHHHHHhhHhhcC-CCCHHHHHHHHHHHHHHcCCcc-cccCCCCCCCh
Q 016804 155 RAGLISDEE-ISGLRIGLVFQSAA--LFDSLTVRENVGFLLYENS-KMRDEQISELVKENLAAVGLKG-VEDRLPSELSG 229 (382)
Q Consensus 155 i~~~~~~~~-~~~~~Ig~V~Q~~~--l~~~lTV~eni~~~~~~~~-~~~~~~~~~~v~~~L~~~gL~~-~~~~~~~~LSG 229 (382)
+..+....- ..+.++-.|||||+ |.|.|||.+-|..++..+. ..+..+..+++.++|+.+||+. -.+|||+++||
T Consensus 350 i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSG 429 (534)
T COG4172 350 IDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSG 429 (534)
T ss_pred ccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCc
Confidence 987644332 22446999999985 8999999999999987665 5678888999999999999974 68999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHh
Q 016804 230 GMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA 309 (382)
Q Consensus 230 GqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~ 309 (382)
|||||+|||||++. +|++++||||||+||...+.++.++|++|.++.. .++++||||+..++.+
T Consensus 430 GQRQRIAIARAliL-------kP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~---------LsYLFISHDL~VvrAl 493 (534)
T COG4172 430 GQRQRIAIARALIL-------KPELILLDEPTSALDRSVQAQVLDLLRDLQQKHG---------LSYLFISHDLAVVRAL 493 (534)
T ss_pred chhhHHHHHHHHhc-------CCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhC---------CeEEEEeccHHHHHHh
Confidence 99999999999995 7999999999999999999999999999987742 5999999999999999
Q ss_pred hchhccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcCCC
Q 016804 310 VDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASGSL 376 (382)
Q Consensus 310 aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~~~ 376 (382)
||+| +||++||||++|++++++ ++++++++++.....
T Consensus 494 ~~~v------------------------------iVm~~GkiVE~G~~~~if~~P~~~YT~~L~~aa~ 531 (534)
T COG4172 494 CHRV------------------------------IVMRDGKIVEQGPTEAVFANPQHEYTRALLAAAF 531 (534)
T ss_pred hceE------------------------------EEEeCCEEeeeCCHHHHhcCCCcHHHHHHHHhhc
Confidence 9988 999999999999999865 688999999886543
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-48 Score=429.10 Aligned_cols=215 Identities=39% Similarity=0.614 Sum_probs=187.5
Q ss_pred eEEEEeEEEEeCCe---eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccc
Q 016804 91 LIDCRNVYKSFGEK---HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (382)
Q Consensus 91 ~I~~~nvs~~yg~~---~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~ 167 (382)
.|+++||+|+|+.+ ++|+|+||+|++|+++||||||||||||++++|.|+++|++|+|++||.|+..+..+ |++ .
T Consensus 350 ~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~-~lr-~ 427 (1228)
T KOG0055|consen 350 EIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLK-WLR-S 427 (1228)
T ss_pred ceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchH-HHH-h
Confidence 49999999999865 599999999999999999999999999999999999999999999999998876443 332 3
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChHHHHHHH
Q 016804 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVA 236 (382)
Q Consensus 168 ~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGGqrQRVa 236 (382)
+||+|+|+|.||. .||+|||.|+. ++..++++.++++..+..++..+.| .+||||||||+|
T Consensus 428 ~iglV~QePvlF~-~tI~eNI~~G~-------~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIA 499 (1228)
T KOG0055|consen 428 QIGLVSQEPVLFA-TTIRENIRYGK-------PDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIA 499 (1228)
T ss_pred hcCeeeechhhhc-ccHHHHHhcCC-------CcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHH
Confidence 7999999999996 69999999863 2233455677788777776666665 579999999999
Q ss_pred HHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccc
Q 016804 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLF 316 (382)
Q Consensus 237 IArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~ 316 (382)
|||||++ +|+|||||||||+||+++++.+++.|+++.+ | +|.|+|+|+++++++ ||+|
T Consensus 500 IARalv~-------~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~-g----------rTTivVaHRLStIrn-aD~I--- 557 (1228)
T KOG0055|consen 500 IARALVR-------NPKILLLDEATSALDAESERVVQEALDKASK-G----------RTTIVVAHRLSTIRN-ADKI--- 557 (1228)
T ss_pred HHHHHHh-------CCCEEEecCcccccCHHHHHHHHHHHHHhhc-C----------CeEEEEeeehhhhhc-cCEE---
Confidence 9999998 5999999999999999999999999998865 4 499999999999998 7766
Q ss_pred cccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCC
Q 016804 317 QIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSS 364 (382)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~ 364 (382)
+||++|+|+|.|+++|+....
T Consensus 558 ---------------------------~v~~~G~IvE~G~h~ELi~~~ 578 (1228)
T KOG0055|consen 558 ---------------------------AVMEEGKIVEQGTHDELIALG 578 (1228)
T ss_pred ---------------------------EEEECCEEEEecCHHHHHhcc
Confidence 999999999999888876544
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-47 Score=353.06 Aligned_cols=199 Identities=32% Similarity=0.448 Sum_probs=174.8
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
||+++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... .. .+.+++
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~--~~~~~~ 77 (204)
T PRK13538 1 MLEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DE--YHQDLL 77 (204)
T ss_pred CeEEEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HH--hhhheE
Confidence 589999999999889999999999999999999999999999999999999999999999999875321 11 223699
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
|++|++.+++.+|+.||+.+....+ .. ...+++.++++.+|+.+..++++.+||||||||++|||||++
T Consensus 78 ~~~~~~~~~~~~tv~e~l~~~~~~~-~~---~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~------- 146 (204)
T PRK13538 78 YLGHQPGIKTELTALENLRFYQRLH-GP---GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLT------- 146 (204)
T ss_pred EeCCccccCcCCcHHHHHHHHHHhc-Cc---cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhc-------
Confidence 9999999999899999998865322 11 224567889999999988899999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|++|||||||++||+.++..+.++|+++++++ .|+|++|||++++..+.+|+
T Consensus 147 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tiii~sh~~~~i~~~~~~~ 199 (204)
T PRK13538 147 RAPLWILDEPFTAIDKQGVARLEALLAQHAEQG----------GMVILTTHQDLPVASDKVRK 199 (204)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCC----------CEEEEEecChhhhccCCceE
Confidence 699999999999999999999999999997665 49999999999998865555
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-47 Score=411.35 Aligned_cols=284 Identities=24% Similarity=0.388 Sum_probs=221.5
Q ss_pred cccchhhHhHhhHHhhhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCC
Q 016804 5 SSSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEP 84 (382)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (382)
+....+.+...+..++.++..+++.. .....++...+|+......|......... .
T Consensus 393 t~G~lia~~~l~~~~~~pl~~l~~~~-----~~~~~~~~~~~ri~~~l~~~~e~~~~~~~-------------------~ 448 (694)
T TIGR01846 393 SPGQLVAFNMLAGRVTQPVLRLAQLW-----QDFQQTGIALERLGDILNSPTEPRSAGLA-------------------A 448 (694)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCCCccCCCCC-------------------C
Confidence 34555566666667788888777776 67788899999999988776432110000 0
Q ss_pred CCCCcceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChh
Q 016804 85 EDDGDVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE 162 (382)
Q Consensus 85 ~~~~~~~I~~~nvs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~ 162 (382)
.......|+++||+|+|++ +++|+|+||+|++||.++|+|+||||||||+|+|+|+++|++|+|++||.++.......
T Consensus 449 ~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~ 528 (694)
T TIGR01846 449 LPELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAW 528 (694)
T ss_pred CCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHH
Confidence 0011124999999999953 56999999999999999999999999999999999999999999999999987653333
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCC-----------CCCCChHH
Q 016804 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL-----------PSELSGGM 231 (382)
Q Consensus 163 ~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~-----------~~~LSGGq 231 (382)
. +.+|+||+|++.+|+ .|++||+.++. ...+. +++.++++.++++++.++. ..+|||||
T Consensus 529 -~-r~~i~~v~q~~~lf~-~ti~eNi~~~~---~~~~~----~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq 598 (694)
T TIGR01846 529 -L-RRQMGVVLQENVLFS-RSIRDNIALCN---PGAPF----EHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQ 598 (694)
T ss_pred -H-HHhCeEEccCCeehh-hhHHHHHhcCC---CCCCH----HHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHH
Confidence 2 236999999999998 59999998742 11222 3455667777766554433 46899999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhc
Q 016804 232 KKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVD 311 (382)
Q Consensus 232 rQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aD 311 (382)
|||++|||||++ +|++|||||||++||+.+++.+.+.|+++.+ + +|+|++||+++.+.. ||
T Consensus 599 ~qri~lARall~-------~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~----------~t~i~itH~~~~~~~-~d 659 (694)
T TIGR01846 599 RQRIAIARALVG-------NPRILIFDEATSALDYESEALIMRNMREICR-G----------RTVIIIAHRLSTVRA-CD 659 (694)
T ss_pred HHHHHHHHHHHh-------CCCEEEEECCCcCCCHHHHHHHHHHHHHHhC-C----------CEEEEEeCChHHHHh-CC
Confidence 999999999997 5999999999999999999999999999853 3 599999999999865 77
Q ss_pred hhccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHH
Q 016804 312 RLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFA 372 (382)
Q Consensus 312 rv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 372 (382)
++ ++|++|+|+++|+.+++... ++...+++
T Consensus 660 ~i------------------------------i~l~~G~i~~~g~~~~l~~~-~~~y~~l~ 689 (694)
T TIGR01846 660 RI------------------------------IVLEKGQIAESGRHEELLAL-QGLYARLW 689 (694)
T ss_pred EE------------------------------EEEeCCEEEEeCCHHHHHHc-CChHHHHH
Confidence 77 99999999999977777644 34445544
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-48 Score=360.32 Aligned_cols=211 Identities=30% Similarity=0.554 Sum_probs=174.5
Q ss_pred EEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 92 IDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 92 I~~~nvs~~yg~-~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.... ... .+.+++
T Consensus 3 l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~-~~~~i~ 80 (229)
T cd03254 3 IEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDIS-RKS-LRSMIG 80 (229)
T ss_pred EEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcC-HHH-HhhhEE
Confidence 789999999975 57999999999999999999999999999999999999999999999999865321 112 233599
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHc-----------CCcccccCCCCCCChHHHHHHHHHH
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAV-----------GLKGVEDRLPSELSGGMKKRVALAR 239 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~-----------gL~~~~~~~~~~LSGGqrQRVaIAr 239 (382)
|+||++.+|+. |++||+.+.... .... .+.++++.+ ++....++++.+|||||||||+|||
T Consensus 81 ~~~q~~~~~~~-tv~~~~~~~~~~---~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~ 152 (229)
T cd03254 81 VVLQDTFLFSG-TIMENIRLGRPN---ATDE----EVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIAR 152 (229)
T ss_pred EecCCchhhhh-HHHHHHhccCCC---CCHH----HHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHH
Confidence 99999998885 999999875311 1111 223333333 4444456677999999999999999
Q ss_pred HHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccc
Q 016804 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIF 319 (382)
Q Consensus 240 AL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~ 319 (382)
||+. +|++|||||||+|||+.++..+.+.|+++. ++ .|+|++||+++++. .||++
T Consensus 153 al~~-------~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~----------~tii~~sh~~~~~~-~~d~i------ 207 (229)
T cd03254 153 AMLR-------DPKILILDEATSNIDTETEKLIQEALEKLM-KG----------RTSIIIAHRLSTIK-NADKI------ 207 (229)
T ss_pred HHhc-------CCCEEEEeCccccCCHHHHHHHHHHHHHhc-CC----------CEEEEEecCHHHHh-hCCEE------
Confidence 9997 699999999999999999999999999985 45 59999999999986 48877
Q ss_pred ccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 320 GHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.|+.+++.
T Consensus 208 ------------------------~~l~~g~~~~~~~~~~~~ 225 (229)
T cd03254 208 ------------------------LVLDDGKIIEEGTHDELL 225 (229)
T ss_pred ------------------------EEEeCCeEEEeCCHHHHH
Confidence 999999999988766654
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-47 Score=395.98 Aligned_cols=277 Identities=28% Similarity=0.428 Sum_probs=211.8
Q ss_pred cccchhhHhHhhHHhhhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCC
Q 016804 5 SSSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEP 84 (382)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (382)
+......+...+..++.++..+.+.. .....+....+|+......|....... .. +
T Consensus 256 t~g~l~a~~~~~~~~~~pl~~l~~~~-----~~~~~~~~~~~ri~~~l~~~~~~~~~~-----------------~~--~ 311 (544)
T TIGR01842 256 TPGMMIAGSILVGRALAPIDGAIGGW-----KQFSGARQAYKRLNELLANYPSRDPAM-----------------PL--P 311 (544)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhCCccccCCC-----------------CC--C
Confidence 33444555555566677777776666 677888889999999887654321000 00 1
Q ss_pred CCCCcceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChh
Q 016804 85 EDDGDVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE 162 (382)
Q Consensus 85 ~~~~~~~I~~~nvs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~ 162 (382)
. ....|+++||+++|++ +++|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|.++.......
T Consensus 312 ~--~~~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~ 389 (544)
T TIGR01842 312 E--PEGHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRET 389 (544)
T ss_pred C--CCCeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHH
Confidence 1 1124999999999964 57999999999999999999999999999999999999999999999999987543222
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHH-----HHHHHHHc--CCcccccCCCCCCChHHHHHH
Q 016804 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISEL-----VKENLAAV--GLKGVEDRLPSELSGGMKKRV 235 (382)
Q Consensus 163 ~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~-----v~~~L~~~--gL~~~~~~~~~~LSGGqrQRV 235 (382)
.+.+|+||||++.+|+. |++||+.++. ...++++..+. +.+.++.+ |++........+||||||||+
T Consensus 390 --~~~~i~~v~q~~~lf~~-ti~~Ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl 463 (544)
T TIGR01842 390 --FGKHIGYLPQDVELFPG-TVAENIARFG---ENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRI 463 (544)
T ss_pred --HhhheEEecCCcccccc-cHHHHHhccC---CCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHH
Confidence 23369999999999985 9999997532 11233332221 12233333 444445555688999999999
Q ss_pred HHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcc
Q 016804 236 ALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCL 315 (382)
Q Consensus 236 aIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~ 315 (382)
+|||||++ +|++|||||||++||+.++..+.+.|+++.+++ +|+|++||+++.+. .||++
T Consensus 464 ~lARall~-------~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~----------~tvi~ith~~~~~~-~~d~i-- 523 (544)
T TIGR01842 464 ALARALYG-------DPKLVVLDEPNSNLDEEGEQALANAIKALKARG----------ITVVVITHRPSLLG-CVDKI-- 523 (544)
T ss_pred HHHHHHhc-------CCCEEEEeCCccccCHHHHHHHHHHHHHHhhCC----------CEEEEEeCCHHHHH-hCCEE--
Confidence 99999997 599999999999999999999999999987555 49999999998764 57776
Q ss_pred ccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 316 FQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.|+.+++.
T Consensus 524 ----------------------------~~l~~G~i~~~g~~~~l~ 541 (544)
T TIGR01842 524 ----------------------------LVLQDGRIARFGERDEVL 541 (544)
T ss_pred ----------------------------EEEECCEEEeeCCHHHHh
Confidence 999999999999766653
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-49 Score=358.06 Aligned_cols=233 Identities=31% Similarity=0.469 Sum_probs=209.3
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
||+++||+|+|+++.+|+++|++|++|.+++|||||||||||||.++++|+++++|+|+++|.++..+.+.. +++ +++
T Consensus 1 MI~i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~-LAk-~lS 78 (252)
T COG4604 1 MITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKE-LAK-KLS 78 (252)
T ss_pred CeeehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHH-HHH-HHH
Confidence 689999999999999999999999999999999999999999999999999999999999999998875444 332 589
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcC-CCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENS-KMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~-~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
.+-|+..+...+||+|-+.|+.+.+. +....+.++.+.++++.++|+++.+|+..+||||||||.-||+.|++|
T Consensus 79 ILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQd----- 153 (252)
T COG4604 79 ILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQD----- 153 (252)
T ss_pred HHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeecc-----
Confidence 99999998888999999999976553 334556678899999999999999999999999999999999999985
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
.+.++||||.++||.....++++.|++++++-+ +||++|-||++++..++|+|
T Consensus 154 --TdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~---------KtiviVlHDINfAS~YsD~I---------------- 206 (252)
T COG4604 154 --TDYVLLDEPLNNLDMKHSVQIMKILRRLADELG---------KTIVVVLHDINFASCYSDHI---------------- 206 (252)
T ss_pred --CcEEEecCcccccchHHHHHHHHHHHHHHHHhC---------CeEEEEEecccHHHhhhhhe----------------
Confidence 999999999999999999999999999998842 69999999999999999988
Q ss_pred cCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHHc
Q 016804 330 AVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFAS 373 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 373 (382)
+-|++|+++.+|+++|+..+ ..+.+++.
T Consensus 207 --------------VAlK~G~vv~~G~~~eii~~--~~L~eiyd 234 (252)
T COG4604 207 --------------VALKNGKVVKQGSPDEIIQP--EILSEIYD 234 (252)
T ss_pred --------------eeecCCEEEecCCHHHhcCH--HHHHHHhc
Confidence 99999999999999998743 44555543
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-47 Score=363.21 Aligned_cols=222 Identities=27% Similarity=0.382 Sum_probs=184.6
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
++++||++. .+|+|+||+|++||+++|+||||||||||+++|+|+++ .+|+|+++|+++.... .... +..++|
T Consensus 1 ~~~~~l~~~----~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~-~~~~-~~~i~~ 73 (248)
T PRK03695 1 MQLNDVAVS----TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWS-AAEL-ARHRAY 73 (248)
T ss_pred Ccccccchh----ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCC-HHHH-hhheEE
Confidence 357888885 38999999999999999999999999999999999986 5999999999875432 2222 225999
Q ss_pred EecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCC
Q 016804 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~ 251 (382)
+||++.+++.+|+++|+.+.... .....+..+++.++++.+++.+..++++.+||||||||++|||||+.+++....+
T Consensus 74 v~q~~~~~~~~tv~~nl~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~ 151 (248)
T PRK03695 74 LSQQQTPPFAMPVFQYLTLHQPD--KTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPA 151 (248)
T ss_pred ecccCccCCCccHHHHHHhcCcc--CCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCC
Confidence 99999888789999999875321 1233344567889999999998889999999999999999999998500000014
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccC
Q 016804 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAV 331 (382)
Q Consensus 252 P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~ 331 (382)
|++|||||||+|||+.++..+.++|+++.+++ .|+|++||+++++.++||++
T Consensus 152 p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~----------~tvi~~sH~~~~~~~~~d~i------------------ 203 (248)
T PRK03695 152 GQLLLLDEPMNSLDVAQQAALDRLLSELCQQG----------IAVVMSSHDLNHTLRHADRV------------------ 203 (248)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHhCC----------CEEEEEecCHHHHHHhCCEE------------------
Confidence 79999999999999999999999999998765 59999999999999999988
Q ss_pred CCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 332 APDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 332 ~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|++++.|+.+++..
T Consensus 204 ------------~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 204 ------------WLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred ------------EEEECCEEEEECCHHHHhC
Confidence 9999999999997777653
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-47 Score=362.68 Aligned_cols=203 Identities=32% Similarity=0.530 Sum_probs=179.5
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
++|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ..+
T Consensus 3 ~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~-------------~~i 69 (251)
T PRK09544 3 SLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGK-------------LRI 69 (251)
T ss_pred cEEEEeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCc-------------cCE
Confidence 4799999999999888999999999999999999999999999999999999999999999862 159
Q ss_pred EEEecCCCCCCC--CCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 016804 170 GLVFQSAALFDS--LTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (382)
Q Consensus 170 g~V~Q~~~l~~~--lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~ 247 (382)
+|+||++.+++. .|+.+|+.+. .... .+++.++++.+|+.+..++++.+|||||||||+|||||+.
T Consensus 70 ~~v~q~~~~~~~l~~~~~~~~~~~----~~~~----~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~---- 137 (251)
T PRK09544 70 GYVPQKLYLDTTLPLTVNRFLRLR----PGTK----KEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLN---- 137 (251)
T ss_pred EEeccccccccccChhHHHHHhcc----cccc----HHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhc----
Confidence 999999988765 3788877542 1111 2346788999999999999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchhee
Q 016804 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVI 326 (382)
Q Consensus 248 ~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~ 326 (382)
+|++|||||||+|||+.++..+.++|+++.++ + .|+|++|||++++.++|||+
T Consensus 138 ---~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g----------~tiiivsH~~~~i~~~~d~i------------- 191 (251)
T PRK09544 138 ---RPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELD----------CAVLMVSHDLHLVMAKTDEV------------- 191 (251)
T ss_pred ---CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcC----------CEEEEEecCHHHHHHhCCEE-------------
Confidence 69999999999999999999999999999775 5 59999999999999999988
Q ss_pred hhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 327 ILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 327 ~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++ ++++.|+++++.
T Consensus 192 -----------------~~l~~-~i~~~g~~~~~~ 208 (251)
T PRK09544 192 -----------------LCLNH-HICCSGTPEVVS 208 (251)
T ss_pred -----------------EEECC-ceEeeCCHHHHh
Confidence 88864 799999887765
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-47 Score=351.57 Aligned_cols=195 Identities=31% Similarity=0.459 Sum_probs=173.3
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
|+++||+++|+++.+|+++||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++... . .. .+.+++|
T Consensus 1 l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~-~-~~-~~~~i~~ 77 (201)
T cd03231 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQ-R-DS-IARGLLY 77 (201)
T ss_pred CEEEEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-c-HH-hhhheEE
Confidence 4789999999988999999999999999999999999999999999999999999999999986432 1 11 2336999
Q ss_pred EecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCC
Q 016804 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~ 251 (382)
++|++.+++.+|++||+.+... .. ..+++.++++.+++.+..++++.+||||||||++|||||+. +
T Consensus 78 ~~q~~~~~~~~tv~e~l~~~~~----~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~-------~ 143 (201)
T cd03231 78 LGHAPGIKTTLSVLENLRFWHA----DH---SDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLS-------G 143 (201)
T ss_pred eccccccCCCcCHHHHHHhhcc----cc---cHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhc-------C
Confidence 9999999888999999987431 11 23457889999999988899999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 252 P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
|++|||||||++||+.++..+.+.|+++.+++ .|+|++|||......+|+|+
T Consensus 144 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g----------~tiii~sH~~~~~~~~~~~~ 195 (201)
T cd03231 144 RPLWILDEPTTALDKAGVARFAEAMAGHCARG----------GMVVLTTHQDLGLSEAGARE 195 (201)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC----------CEEEEEecCchhhhhcccee
Confidence 99999999999999999999999999987765 59999999999999999988
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-47 Score=359.92 Aligned_cols=216 Identities=33% Similarity=0.551 Sum_probs=176.9
Q ss_pred EEEEeEEEEeCC---eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 92 IDCRNVYKSFGE---KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 92 I~~~nvs~~yg~---~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.... .... +.+
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~-~~~~-~~~ 78 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLN-LRWL-RSQ 78 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcC-HHHH-Hhh
Confidence 478999999964 46999999999999999999999999999999999999999999999999864321 2221 235
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHH-----HHHHHHHc--CCcccccCCCCCCChHHHHHHHHHHHH
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISEL-----VKENLAAV--GLKGVEDRLPSELSGGMKKRVALARSI 241 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~-----v~~~L~~~--gL~~~~~~~~~~LSGGqrQRVaIArAL 241 (382)
++|+||++.+|+ .|++||+.+.... ...++..+. +.++++.+ ++....++.+.+|||||||||+|||||
T Consensus 79 i~~~~q~~~~~~-~tv~e~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al 154 (238)
T cd03249 79 IGLVSQEPVLFD-GTIAENIRYGKPD---ATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARAL 154 (238)
T ss_pred EEEECCchhhhh-hhHHHHhhccCCC---CCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHH
Confidence 999999998887 6999999875321 112221111 12233333 555567788899999999999999999
Q ss_pred hcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccccc
Q 016804 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGH 321 (382)
Q Consensus 242 ~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~ 321 (382)
+. +|++|||||||+|||+.++..+.+.|+++. ++ .|+|++||+++++. +||++
T Consensus 155 ~~-------~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g----------~~vi~~sh~~~~~~-~~d~v-------- 207 (238)
T cd03249 155 LR-------NPKILLLDEATSALDAESEKLVQEALDRAM-KG----------RTTIVIAHRLSTIR-NADLI-------- 207 (238)
T ss_pred hc-------CCCEEEEeCccccCCHHHHHHHHHHHHHhc-CC----------CEEEEEeCCHHHHh-hCCEE--------
Confidence 97 699999999999999999999999999986 55 59999999999997 78877
Q ss_pred chheehhccCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 322 IDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|++++.|+.+++..
T Consensus 208 ----------------------~~l~~G~i~~~~~~~~~~~ 226 (238)
T cd03249 208 ----------------------AVLQNGQVVEQGTHDELMA 226 (238)
T ss_pred ----------------------EEEECCEEEEeCCHHHHhh
Confidence 9999999999997766653
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-47 Score=395.48 Aligned_cols=222 Identities=21% Similarity=0.378 Sum_probs=188.1
Q ss_pred CcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccc
Q 016804 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (382)
Q Consensus 88 ~~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~ 167 (382)
..++|+++|+++.|+ .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++... ......+.
T Consensus 262 ~~~~l~~~~l~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~-~~~~~~~~ 338 (510)
T PRK09700 262 HETVFEVRNVTSRDR--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPR-SPLDAVKK 338 (510)
T ss_pred CCcEEEEeCccccCC--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCC-CHHHHHHC
Confidence 346899999999874 489999999999999999999999999999999999999999999999987432 12111223
Q ss_pred eEEEEecC---CCCCCCCCHHHHHHhhHhhc----C---C-CCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHH
Q 016804 168 RIGLVFQS---AALFDSLTVRENVGFLLYEN----S---K-MRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRV 235 (382)
Q Consensus 168 ~Ig~V~Q~---~~l~~~lTV~eni~~~~~~~----~---~-~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRV 235 (382)
+|||+||+ +.+++.+||+||+.++.... . + .......+.+.++++.+++. +..++++.+|||||||||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv 418 (510)
T PRK09700 339 GMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKV 418 (510)
T ss_pred CcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHH
Confidence 69999998 46888899999998753210 0 1 12233345678899999997 788999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcc
Q 016804 236 ALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCL 315 (382)
Q Consensus 236 aIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~ 315 (382)
+|||||+. +|+||||||||+|||+.++..+.++|++++++| .|||+||||++++..+|||+
T Consensus 419 ~lAral~~-------~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g----------~tvi~vsHd~~~~~~~~d~i-- 479 (510)
T PRK09700 419 LISKWLCC-------CPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDG----------KVILMVSSELPEIITVCDRI-- 479 (510)
T ss_pred HHHHHHhc-------CCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCC----------CEEEEEcCCHHHHHhhCCEE--
Confidence 99999997 699999999999999999999999999998766 59999999999999999988
Q ss_pred ccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccc
Q 016804 316 FQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHE 359 (382)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~ 359 (382)
++|++|++++.+...+
T Consensus 480 ----------------------------~~l~~G~i~~~~~~~~ 495 (510)
T PRK09700 480 ----------------------------AVFCEGRLTQILTNRD 495 (510)
T ss_pred ----------------------------EEEECCEEEEEecCcc
Confidence 9999999998886534
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-47 Score=355.38 Aligned_cols=216 Identities=33% Similarity=0.547 Sum_probs=177.0
Q ss_pred EEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 92 IDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 92 I~~~nvs~~yg-~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ... .+..++
T Consensus 1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~-~~~-~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVT-LDS-LRRAIG 78 (236)
T ss_pred CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCC-HHH-HHhhEE
Confidence 47899999996 567999999999999999999999999999999999999999999999999875432 111 123599
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHH-----HHHHHHHHc--CCcccccCCCCCCChHHHHHHHHHHHHhc
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISE-----LVKENLAAV--GLKGVEDRLPSELSGGMKKRVALARSIIF 243 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~-----~v~~~L~~~--gL~~~~~~~~~~LSGGqrQRVaIArAL~~ 243 (382)
|+||++.+|+ .|+.||+.++... .......+ .+.+.++.+ +++...++.+.+|||||||||+|||||+.
T Consensus 79 ~~~q~~~~~~-~tv~~nl~~~~~~---~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~ 154 (236)
T cd03253 79 VVPQDTVLFN-DTIGYNIRYGRPD---ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILK 154 (236)
T ss_pred EECCCChhhc-chHHHHHhhcCCC---CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 9999999986 6999999875321 12222111 122233333 44555667789999999999999999997
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccch
Q 016804 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHID 323 (382)
Q Consensus 244 ~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~ 323 (382)
+|++|||||||+|||+.++..+.++|.++++ + .|+|++||+++.+.. |||+
T Consensus 155 -------~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~----------~tiii~sh~~~~~~~-~d~~---------- 205 (236)
T cd03253 155 -------NPPILLLDEATSALDTHTEREIQAALRDVSK-G----------RTTIVIAHRLSTIVN-ADKI---------- 205 (236)
T ss_pred -------CCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-C----------CEEEEEcCCHHHHHh-CCEE----------
Confidence 6999999999999999999999999999876 5 599999999999965 8877
Q ss_pred heehhccCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 324 VVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|++++.|+.+++..
T Consensus 206 --------------------~~l~~g~i~~~~~~~~~~~ 224 (236)
T cd03253 206 --------------------IVLKDGRIVERGTHEELLA 224 (236)
T ss_pred --------------------EEEECCEEEeeCCHHHHhh
Confidence 9999999999997777654
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-47 Score=394.92 Aligned_cols=214 Identities=21% Similarity=0.276 Sum_probs=185.7
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
||+++||+|+|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++... ..... +.++|
T Consensus 3 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~-~~~~~-~~~i~ 80 (490)
T PRK10938 3 SLQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRL-SFEQL-QKLVS 80 (490)
T ss_pred eEEEEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccC-CHHHH-HHHhc
Confidence 69999999999988899999999999999999999999999999999999999999999999775432 11221 22599
Q ss_pred EEecCCCC--C-C-----CCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHh
Q 016804 171 LVFQSAAL--F-D-----SLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSII 242 (382)
Q Consensus 171 ~V~Q~~~l--~-~-----~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~ 242 (382)
|+||++.+ + + .+|+++|+.+. .+..+++.++++.+||.+..++++.+|||||||||+|||||+
T Consensus 81 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~ 151 (490)
T PRK10938 81 DEWQRNNTDMLSPGEDDTGRTTAEIIQDE---------VKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALM 151 (490)
T ss_pred eeccCcchhhcccchhhccccHHHhcccc---------hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 99998653 2 1 46888887542 122456788999999998899999999999999999999999
Q ss_pred cCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccc
Q 016804 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHI 322 (382)
Q Consensus 243 ~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~ 322 (382)
. +|++|||||||+|||+.++..+.++|++++++| .|+|++|||++++.++|||+
T Consensus 152 ~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g----------~tvii~tH~~~~~~~~~d~v--------- 205 (490)
T PRK10938 152 S-------EPDLLILDEPFDGLDVASRQQLAELLASLHQSG----------ITLVLVLNRFDEIPDFVQFA--------- 205 (490)
T ss_pred c-------CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcC----------CeEEEEeCCHHHHHhhCCEE---------
Confidence 7 699999999999999999999999999998765 59999999999999999988
Q ss_pred hheehhccCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 323 DVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|+++..|+++++..
T Consensus 206 ---------------------~~l~~G~i~~~~~~~~~~~ 224 (490)
T PRK10938 206 ---------------------GVLADCTLAETGEREEILQ 224 (490)
T ss_pred ---------------------EEEECCEEEEeCCHHHHhc
Confidence 9999999999998777643
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-47 Score=393.77 Aligned_cols=224 Identities=23% Similarity=0.386 Sum_probs=190.2
Q ss_pred cceEEEEeEEEEe---CCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-CccEEEECCEECCCCCChhhh
Q 016804 89 DVLIDCRNVYKSF---GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-DKGEVYIRGRKRAGLISDEEI 164 (382)
Q Consensus 89 ~~~I~~~nvs~~y---g~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p-~sG~I~i~G~~i~~~~~~~~~ 164 (382)
.++|+++|++++| +++.+|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|+++... .....
T Consensus 255 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~-~~~~~ 333 (500)
T TIGR02633 255 DVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIR-NPAQA 333 (500)
T ss_pred CceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCC-CHHHH
Confidence 4589999999999 346799999999999999999999999999999999999995 899999999987432 12112
Q ss_pred ccceEEEEecCC---CCCCCCCHHHHHHhhHhh-cC---CCCHHHHHHHHHHHHHHcCCcc-cccCCCCCCChHHHHHHH
Q 016804 165 SGLRIGLVFQSA---ALFDSLTVRENVGFLLYE-NS---KMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVA 236 (382)
Q Consensus 165 ~~~~Ig~V~Q~~---~l~~~lTV~eni~~~~~~-~~---~~~~~~~~~~v~~~L~~~gL~~-~~~~~~~~LSGGqrQRVa 236 (382)
.+.+|||+||++ .+++.+||++|+.++... .. .......++.+.++++.+++.. ..++++.+|||||||||+
T Consensus 334 ~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ 413 (500)
T TIGR02633 334 IRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAV 413 (500)
T ss_pred HhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHH
Confidence 233699999996 588889999999875321 11 1223334566889999999974 689999999999999999
Q ss_pred HHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccc
Q 016804 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLF 316 (382)
Q Consensus 237 IArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~ 316 (382)
|||||+. +|++|||||||+|||+.++..++++|++++++| .|||++|||++++.++|||+
T Consensus 414 la~al~~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g----------~tviivsHd~~~~~~~~d~v--- 473 (500)
T TIGR02633 414 LAKMLLT-------NPRVLILDEPTRGVDVGAKYEIYKLINQLAQEG----------VAIIVVSSELAEVLGLSDRV--- 473 (500)
T ss_pred HHHHHhh-------CCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCC----------CEEEEECCCHHHHHHhCCEE---
Confidence 9999997 699999999999999999999999999998776 59999999999999999988
Q ss_pred cccccchheehhccCCCCcccccccEEEEEeCCeEEEEeccccc
Q 016804 317 QIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEF 360 (382)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~ 360 (382)
++|++|+++..++.+++
T Consensus 474 ---------------------------~~l~~G~i~~~~~~~~~ 490 (500)
T TIGR02633 474 ---------------------------LVIGEGKLKGDFVNHAL 490 (500)
T ss_pred ---------------------------EEEECCEEEEEEccccC
Confidence 99999999988865543
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-46 Score=397.81 Aligned_cols=283 Identities=23% Similarity=0.366 Sum_probs=210.4
Q ss_pred chhhHhHhhHHhhhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCC
Q 016804 8 GSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDD 87 (382)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (382)
....+...+..++.++..+++.. .....++...+|+.+....|+....... . . ....
T Consensus 274 ~l~a~~~~~~~l~~~~~~l~~~~-----~~~~~~~~~~~ri~~~~~~~~~~~~~~~------~----------~--~~~~ 330 (585)
T TIGR01192 274 EVIAFIGFANLLIGRLDQMSGFI-----TQIFEARAKLEDFFDLEDSVFQREEPAD------A----------P--ELPN 330 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCccccCCcc------C----------C--CCCC
Confidence 33344444445566666666555 4556677778888887766532110000 0 0 0001
Q ss_pred CcceEEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhcc
Q 016804 88 GDVLIDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (382)
Q Consensus 88 ~~~~I~~~nvs~~yg~-~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~ 166 (382)
....|+++||+|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++....... . +
T Consensus 331 ~~~~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~-~-~ 408 (585)
T TIGR01192 331 VKGAVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRES-L-R 408 (585)
T ss_pred CCCeEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHH-H-H
Confidence 1224999999999975 57999999999999999999999999999999999999999999999999976543222 2 3
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCC-----------cccccCCCCCCChHHHHHH
Q 016804 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL-----------KGVEDRLPSELSGGMKKRV 235 (382)
Q Consensus 167 ~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL-----------~~~~~~~~~~LSGGqrQRV 235 (382)
..++||+|++.+|+ .|++||+.++. ...+.++ +.++++.+++ +.........||||||||+
T Consensus 409 ~~i~~v~q~~~lf~-~ti~~Ni~~~~---~~~~~~~----~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl 480 (585)
T TIGR01192 409 KSIATVFQDAGLFN-RSIRENIRLGR---EGATDEE----VYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRL 480 (585)
T ss_pred hheEEEccCCccCc-ccHHHHHhcCC---CCCCHHH----HHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHH
Confidence 36999999999997 59999998753 1123333 3334444443 3344455678999999999
Q ss_pred HHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcc
Q 016804 236 ALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCL 315 (382)
Q Consensus 236 aIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~ 315 (382)
+|||||++ +|++|||||||++||+.+++.+.+.|+++.+ + +|+|+|||+++.+.. ||+|
T Consensus 481 ~lARall~-------~p~ililDEpts~LD~~~~~~i~~~l~~~~~-~----------~tvI~isH~~~~~~~-~d~i-- 539 (585)
T TIGR01192 481 AIARAILK-------NAPILVLDEATSALDVETEARVKNAIDALRK-N----------RTTFIIAHRLSTVRN-ADLV-- 539 (585)
T ss_pred HHHHHHhc-------CCCEEEEECCccCCCHHHHHHHHHHHHHHhC-C----------CEEEEEEcChHHHHc-CCEE--
Confidence 99999997 6999999999999999999999999998854 3 599999999999854 7766
Q ss_pred ccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHHc
Q 016804 316 FQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFAS 373 (382)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 373 (382)
++|++|++++.|+.+++.... +...++..
T Consensus 540 ----------------------------~~l~~G~i~~~g~~~~l~~~~-~~y~~l~~ 568 (585)
T TIGR01192 540 ----------------------------LFLDQGRLIEKGSFQELIQKD-GRFYKLLR 568 (585)
T ss_pred ----------------------------EEEECCEEEEECCHHHHHHCC-ChHHHHHH
Confidence 999999999999777766443 34444433
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-47 Score=390.82 Aligned_cols=279 Identities=29% Similarity=0.439 Sum_probs=215.3
Q ss_pred hHhHhhHHhhhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCcc
Q 016804 11 LFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDV 90 (382)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (382)
++.+++|..+..|..++. + ...-....-.+.+|+..+...|+...-.+. +.+..+.
T Consensus 280 ~~ll~~f~~~eaf~~L~~-~---A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~~~-------------------~~~~~~~- 335 (573)
T COG4987 280 LALLVIFAALEAFEPLAP-G---AFQHLGQVIASARRLNDILDQKPEVTFPDE-------------------QTATTGQ- 335 (573)
T ss_pred HHHHHHHHHHHHHhhhcc-h---hHHHhhHHHHHHHHHhhhccCCcccCCCcc-------------------ccCCccc-
Confidence 333444555555655443 1 112234455666777777666642221110 0111222
Q ss_pred eEEEEeEEEEeCCe--eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 91 LIDCRNVYKSFGEK--HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 91 ~I~~~nvs~~yg~~--~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
.++++||+|+|++. ++|+|+||++++||.+||+|+||||||||+++|+|.++|++|+|.++|.++..+..... +..
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~--~e~ 413 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQAL--RET 413 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhH--HHH
Confidence 69999999999765 49999999999999999999999999999999999999999999999999877643322 225
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChHHHHHHHH
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVAL 237 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGGqrQRVaI 237 (382)
|++++|.+.+|.. |+++|+.+.. .. ..++.+.++++.+||+++....| ..||||||||++|
T Consensus 414 i~vl~Qr~hlF~~-Tlr~NL~lA~---~~----AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAl 485 (573)
T COG4987 414 ISVLTQRVHLFSG-TLRDNLRLAN---PD----ASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLAL 485 (573)
T ss_pred HhhhccchHHHHH-HHHHHHhhcC---CC----CCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHH
Confidence 9999999999985 9999998742 22 23455778899999987766654 7899999999999
Q ss_pred HHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccc
Q 016804 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQ 317 (382)
Q Consensus 238 ArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~ 317 (382)
||+|++ +.+++||||||.|||+.++++++++|.+-.+. +|+|||||++..+.+ ||
T Consensus 486 AR~LL~-------dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~-----------kTll~vTHrL~~le~-~d------ 540 (573)
T COG4987 486 ARALLH-------DAPLWLLDEPTEGLDPITERQVLALLFEHAEG-----------KTLLMVTHRLRGLER-MD------ 540 (573)
T ss_pred HHHHHc-------CCCeEEecCCcccCChhhHHHHHHHHHHHhcC-----------CeEEEEecccccHhh-cC------
Confidence 999998 49999999999999999999999999987653 499999999999886 45
Q ss_pred ccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHHc
Q 016804 318 IFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFAS 373 (382)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 373 (382)
||+||++||++++|+.+++.. .++...++++
T Consensus 541 ------------------------rIivl~~Gkiie~G~~~~Ll~-~~g~~~~l~q 571 (573)
T COG4987 541 ------------------------RIIVLDNGKIIEEGTHAELLA-NNGRYKRLYQ 571 (573)
T ss_pred ------------------------EEEEEECCeeeecCCHHhhhc-cccHHHHHhc
Confidence 459999999999998888775 5666666654
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-47 Score=355.50 Aligned_cols=202 Identities=33% Similarity=0.472 Sum_probs=176.5
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
+.++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..
T Consensus 23 l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~-------------- 88 (224)
T cd03220 23 LGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSL-------------- 88 (224)
T ss_pred hhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchh--------------
Confidence 778999999999999999999999999999999999999999999999999999999999987421
Q ss_pred EecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCC
Q 016804 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~ 251 (382)
..+...+++.+||+||+.+..... +....+..+++.++++.+++.+..++++.+||||||||++|||||+. +
T Consensus 89 ~~~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~-------~ 160 (224)
T cd03220 89 LGLGGGFNPELTGRENIYLNGRLL-GLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATAL-------E 160 (224)
T ss_pred hcccccCCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc-------C
Confidence 111223456789999998865322 23444555677889999999998999999999999999999999997 5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccC
Q 016804 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAV 331 (382)
Q Consensus 252 P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~ 331 (382)
|++|||||||+|||+.++..+.+.|+++++++ .|+|++||+++++..+|||+
T Consensus 161 p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~----------~tiii~sH~~~~~~~~~d~i------------------ 212 (224)
T cd03220 161 PDILLIDEVLAVGDAAFQEKCQRRLRELLKQG----------KTVILVSHDPSSIKRLCDRA------------------ 212 (224)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHhCCEE------------------
Confidence 99999999999999999999999999998765 59999999999999999988
Q ss_pred CCCcccccccEEEEEeCCeEEEEe
Q 016804 332 APDKEVFFIYRLIFLYEGKIVWQG 355 (382)
Q Consensus 332 ~~~~~~~~~~~ii~l~~G~i~~~g 355 (382)
++|++|++++.|
T Consensus 213 ------------~~l~~G~i~~~g 224 (224)
T cd03220 213 ------------LVLEKGKIRFDG 224 (224)
T ss_pred ------------EEEECCEEEecC
Confidence 999999998764
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-47 Score=396.63 Aligned_cols=283 Identities=25% Similarity=0.397 Sum_probs=213.3
Q ss_pred cchhhHhHhhHHhhhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCC
Q 016804 7 SGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPED 86 (382)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (382)
.....+...+..+..++..+.+.. .....++...+|+......|.... ....+ . . .+.
T Consensus 275 g~~~~~~~~~~~~~~pl~~~~~~~-----~~~~~~~~~~~ri~~~l~~~~~~~-~~~~~-----~--------~---~~~ 332 (576)
T TIGR02204 275 GTLGQFVFYAVMVAGSIGTLSEVW-----GELQRAAGAAERLIELLQAEPDIK-APAHP-----K--------T---LPV 332 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhCCCCcCC-CCCCC-----c--------c---CCc
Confidence 333444444455566776666655 666778888889988877653211 00000 0 0 000
Q ss_pred CCcceEEEEeEEEEeCC---eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhh
Q 016804 87 DGDVLIDCRNVYKSFGE---KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE 163 (382)
Q Consensus 87 ~~~~~I~~~nvs~~yg~---~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~ 163 (382)
.....|+++||+++|++ +.+|+|+||+|++||.++|+||||||||||+|+|+|+++|++|+|++||.++.......
T Consensus 333 ~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~- 411 (576)
T TIGR02204 333 PLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAE- 411 (576)
T ss_pred CCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHH-
Confidence 11224999999999964 56999999999999999999999999999999999999999999999999987543222
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCC-----------CCCCChHHH
Q 016804 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL-----------PSELSGGMK 232 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~-----------~~~LSGGqr 232 (382)
. +.+|+|+||++.+|+ .|++||+.++. ...+ ++++.++++.+++.++.++. ...||||||
T Consensus 412 ~-~~~i~~~~Q~~~lf~-~Ti~~Ni~~~~---~~~~----~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~ 482 (576)
T TIGR02204 412 L-RARMALVPQDPVLFA-ASVMENIRYGR---PDAT----DEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQR 482 (576)
T ss_pred H-HHhceEEccCCcccc-ccHHHHHhcCC---CCCC----HHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHH
Confidence 2 236999999999997 59999998742 1122 23466677777775544433 357999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhch
Q 016804 233 KRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDR 312 (382)
Q Consensus 233 QRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDr 312 (382)
||++||||+++ +|++||||||||+||+.+++.+++.|+++.+ + +|+|+|||+++.+. .|||
T Consensus 483 Qrl~laRal~~-------~~~ililDEpts~lD~~~~~~i~~~l~~~~~-~----------~t~IiitH~~~~~~-~~d~ 543 (576)
T TIGR02204 483 QRIAIARAILK-------DAPILLLDEATSALDAESEQLVQQALETLMK-G----------RTTLIIAHRLATVL-KADR 543 (576)
T ss_pred HHHHHHHHHHh-------CCCeEEEeCcccccCHHHHHHHHHHHHHHhC-C----------CEEEEEecchHHHH-hCCE
Confidence 99999999997 5999999999999999999999999999854 3 59999999998875 5776
Q ss_pred hccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHH
Q 016804 313 LCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQF 371 (382)
Q Consensus 313 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~ 371 (382)
+ ++|++|++++.|+.+++... ++..+++
T Consensus 544 v------------------------------i~l~~g~~~~~g~~~~l~~~-~~~~~~l 571 (576)
T TIGR02204 544 I------------------------------VVMDQGRIVAQGTHAELIAK-GGLYARL 571 (576)
T ss_pred E------------------------------EEEECCEEEeeecHHHHHHc-CChHHHH
Confidence 6 99999999999987776543 3333443
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-47 Score=368.20 Aligned_cols=220 Identities=27% Similarity=0.472 Sum_probs=187.8
Q ss_pred EEEEeEEEEe--CCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 92 IDCRNVYKSF--GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 92 I~~~nvs~~y--g~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
|+++||+++| ++..+|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|+|+|.++... ..... +.+|
T Consensus 3 i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~-~~~~l-r~~i 79 (275)
T cd03289 3 MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSV-PLQKW-RKAF 79 (275)
T ss_pred EEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhC-CHHHH-hhhE
Confidence 8899999999 45679999999999999999999999999999999999998 789999999987643 22222 3369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCC-----------CChHHHHHHHHH
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSE-----------LSGGMKKRVALA 238 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~-----------LSGGqrQRVaIA 238 (382)
+|+||++.+|+. |+++|+.... .... +++.++++.+||.++.+++|.. ||||||||++||
T Consensus 80 ~~v~q~~~lf~~-tv~~nl~~~~----~~~~----~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~La 150 (275)
T cd03289 80 GVIPQKVFIFSG-TFRKNLDPYG----KWSD----EEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLA 150 (275)
T ss_pred EEECCCcccchh-hHHHHhhhcc----CCCH----HHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHH
Confidence 999999999984 9999996321 1222 3467788999999989999977 999999999999
Q ss_pred HHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccc
Q 016804 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQI 318 (382)
Q Consensus 239 rAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~ 318 (382)
|||+. +|+||||||||++||+.++..+++.|+++.+ + +|||+|||+++++.. ||||
T Consensus 151 Rall~-------~p~illlDEpts~LD~~~~~~l~~~l~~~~~-~----------~tii~isH~~~~i~~-~dri----- 206 (275)
T cd03289 151 RSVLS-------KAKILLLDEPSAHLDPITYQVIRKTLKQAFA-D----------CTVILSEHRIEAMLE-CQRF----- 206 (275)
T ss_pred HHHhc-------CCCEEEEECccccCCHHHHHHHHHHHHHhcC-C----------CEEEEEECCHHHHHh-CCEE-----
Confidence 99997 6999999999999999999999999998753 4 599999999999875 8877
Q ss_pred cccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHHc
Q 016804 319 FGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFAS 373 (382)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 373 (382)
++|++|++++.|+++++... ..+..+++.
T Consensus 207 -------------------------~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~ 235 (275)
T cd03289 207 -------------------------LVIEENKVRQYDSIQKLLNE-KSHFKQAIS 235 (275)
T ss_pred -------------------------EEecCCeEeecCCHHHHhhC-cHHHHHHHh
Confidence 99999999999999897753 355555554
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-46 Score=396.08 Aligned_cols=273 Identities=19% Similarity=0.304 Sum_probs=209.0
Q ss_pred cchhhHhHhhHHhhhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCC
Q 016804 7 SGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPED 86 (382)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (382)
.....+...+..+..++..+++.. ..........+|+......|+... .. .. +..
T Consensus 254 g~l~a~~~~~~~~~~pl~~l~~~~-----~~~~~~~~a~~ri~~ll~~~~~~~-~~--------~~-----------~~~ 308 (569)
T PRK10789 254 GQLTSFVMYLGLMIWPMLALAWMF-----NIVERGSAAYSRIRAMLAEAPVVK-DG--------SE-----------PVP 308 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCCccc-CC--------CC-----------CCC
Confidence 334444445555566766655554 566677788888888876653211 00 00 000
Q ss_pred CCcceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhh
Q 016804 87 DGDVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEI 164 (382)
Q Consensus 87 ~~~~~I~~~nvs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~ 164 (382)
.....|+++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|+++|+++....... .
T Consensus 309 ~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~-~ 387 (569)
T PRK10789 309 EGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDS-W 387 (569)
T ss_pred CCCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHH-H
Confidence 11123899999999964 56999999999999999999999999999999999999999999999999986543222 2
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCccccc-----------CCCCCCChHHHH
Q 016804 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVED-----------RLPSELSGGMKK 233 (382)
Q Consensus 165 ~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~-----------~~~~~LSGGqrQ 233 (382)
+.+|+|++|++.+|+. |++||+.++. ...++ +++.++++.+++.++.. .....|||||||
T Consensus 388 -~~~i~~v~q~~~lf~~-ti~~Ni~~~~---~~~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~q 458 (569)
T PRK10789 388 -RSRLAVVSQTPFLFSD-TVANNIALGR---PDATQ----QEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQ 458 (569)
T ss_pred -HhheEEEccCCeeccc-cHHHHHhcCC---CCCCH----HHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHH
Confidence 3369999999999985 9999998753 11232 33455677776654433 334689999999
Q ss_pred HHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 234 RVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 234 RVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
|++|||||++ +|++|||||||++||+.+++.+.+.|+++.+ + +|+|++||+++.+.. ||++
T Consensus 459 Ri~lARall~-------~~~illlDEpts~LD~~~~~~i~~~l~~~~~-~----------~tii~itH~~~~~~~-~d~i 519 (569)
T PRK10789 459 RISIARALLL-------NAEILILDDALSAVDGRTEHQILHNLRQWGE-G----------RTVIISAHRLSALTE-ASEI 519 (569)
T ss_pred HHHHHHHHhc-------CCCEEEEECccccCCHHHHHHHHHHHHHHhC-C----------CEEEEEecchhHHHc-CCEE
Confidence 9999999997 5999999999999999999999999999853 4 499999999988764 7766
Q ss_pred ccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccC
Q 016804 314 CLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSS 363 (382)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~ 363 (382)
++|++|+++++|+.+++...
T Consensus 520 ------------------------------~~l~~G~i~~~g~~~~l~~~ 539 (569)
T PRK10789 520 ------------------------------LVMQHGHIAQRGNHDQLAQQ 539 (569)
T ss_pred ------------------------------EEEeCCEEEEecCHHHHHHc
Confidence 99999999999977776543
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-46 Score=338.97 Aligned_cols=165 Identities=42% Similarity=0.752 Sum_probs=151.0
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
|+++|++++|+++++|+++||++++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... .. .+.+++|
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~-~~~~i~~ 77 (173)
T cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP--EE-VKRRIGY 77 (173)
T ss_pred CEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch--Hh-hhccEEE
Confidence 46899999998888999999999999999999999999999999999999999999999999875421 22 2336999
Q ss_pred EecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCC
Q 016804 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~ 251 (382)
+||++.+|+.+|+.||+. ||||||||++|||||+. +
T Consensus 78 ~~q~~~~~~~~tv~~~~~-------------------------------------LS~G~~qrv~laral~~-------~ 113 (173)
T cd03230 78 LPEEPSLYENLTVRENLK-------------------------------------LSGGMKQRLALAQALLH-------D 113 (173)
T ss_pred EecCCccccCCcHHHHhh-------------------------------------cCHHHHHHHHHHHHHHc-------C
Confidence 999999998899999983 99999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 252 P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
|++|||||||++||+.++..+.++|+++.++| .|+|++|||.+++..+||++
T Consensus 114 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g----------~tiii~th~~~~~~~~~d~i 165 (173)
T cd03230 114 PELLILDEPTSGLDPESRREFWELLRELKKEG----------KTILLSSHILEEAERLCDRV 165 (173)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHCC----------CEEEEECCCHHHHHHhCCEE
Confidence 99999999999999999999999999998775 49999999999999999988
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-47 Score=355.60 Aligned_cols=202 Identities=28% Similarity=0.469 Sum_probs=169.6
Q ss_pred CCcceEEEEeEEEEeCC---eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhh
Q 016804 87 DGDVLIDCRNVYKSFGE---KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE 163 (382)
Q Consensus 87 ~~~~~I~~~nvs~~yg~---~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~ 163 (382)
....+|+++|++++|++ ..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ...
T Consensus 7 ~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~ 85 (226)
T cd03248 7 HLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYE-HKY 85 (226)
T ss_pred CcCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcC-HHH
Confidence 44568999999999975 36999999999999999999999999999999999999999999999998764321 111
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHH-----HHHHHHHHHHc--CCcccccCCCCCCChHHHHHHH
Q 016804 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQI-----SELVKENLAAV--GLKGVEDRLPSELSGGMKKRVA 236 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~-----~~~v~~~L~~~--gL~~~~~~~~~~LSGGqrQRVa 236 (382)
.+.+++|+||++.+|+ .|++||+.++... ....+. ...+.++++.+ |+....++++.+|||||||||+
T Consensus 86 -~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~---~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~ 160 (226)
T cd03248 86 -LHSKVSLVGQEPVLFA-RSLQDNIAYGLQS---CSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVA 160 (226)
T ss_pred -HHhhEEEEecccHHHh-hhHHHHhccccCC---CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHH
Confidence 2336999999999887 5999999875421 111111 12246778888 8888889999999999999999
Q ss_pred HHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 237 IArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
|||||+. +|++|||||||++||+.++..+.+.|+++.+ + .|+|++|||++++.. |||+
T Consensus 161 laral~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~----------~tii~~sh~~~~~~~-~d~i 218 (226)
T cd03248 161 IARALIR-------NPQVLILDEATSALDAESEQQVQQALYDWPE-R----------RTVLVIAHRLSTVER-ADQI 218 (226)
T ss_pred HHHHHhc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-C----------CEEEEEECCHHHHHh-CCEE
Confidence 9999997 6999999999999999999999999999865 3 499999999999964 8877
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-46 Score=339.39 Aligned_cols=170 Identities=46% Similarity=0.747 Sum_probs=152.6
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
|+++|++++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..........+..++|
T Consensus 1 i~~~~l~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 80 (178)
T cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGM 80 (178)
T ss_pred CEEEEEEEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEE
Confidence 47899999999889999999999999999999999999999999999999999999999999875432101112346999
Q ss_pred EecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCC
Q 016804 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~ 251 (382)
++|++.+|+.+|++||+.+. ||||||||++|||||+. +
T Consensus 81 ~~q~~~~~~~~t~~~~l~~~-----------------------------------lS~G~~qr~~la~al~~-------~ 118 (178)
T cd03229 81 VFQDFALFPHLTVLENIALG-----------------------------------LSGGQQQRVALARALAM-------D 118 (178)
T ss_pred EecCCccCCCCCHHHheeec-----------------------------------CCHHHHHHHHHHHHHHC-------C
Confidence 99999999889999998652 99999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 252 P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
|+++||||||+|||+.++..+.++|++++++ + .|+|++|||++++..+||++
T Consensus 119 p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~----------~tiii~sH~~~~~~~~~d~i 171 (178)
T cd03229 119 PDVLLLDEPTSALDPITRREVRALLKSLQAQLG----------ITVVLVTHDLDEAARLADRV 171 (178)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhcCEE
Confidence 9999999999999999999999999999876 4 59999999999999999987
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=392.50 Aligned_cols=243 Identities=31% Similarity=0.448 Sum_probs=188.6
Q ss_pred hHhHhhHHhhhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCcc
Q 016804 11 LFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDV 90 (382)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (382)
.+...+..++.++..+.+.. ..........+|+......|+.....+ .+. . ... .+ ...
T Consensus 275 ~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~ri~~~l~~~~~~~~~~-~~~------~-----~~~--~~--~~~ 333 (529)
T TIGR02868 275 VLVLLPLAAFEAFAPLPAAA-----QALTRVRAAAERIEEVTGAKGPRPEGV-VPA------A-----GAL--GL--GKP 333 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhcCCCCcCCCC-CCC------C-----ccc--CC--CCc
Confidence 33434444566666655555 566677888899988887764211100 000 0 000 11 112
Q ss_pred eEEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 91 LIDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 91 ~I~~~nvs~~yg~-~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
.|+++||+|+|++ +++|+|+||+|++||.+||+||||||||||+|+|+|+++|++|+|++||.++... .... +.+|
T Consensus 334 ~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~l--r~~i 410 (529)
T TIGR02868 334 TLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDEL--RRRI 410 (529)
T ss_pred eEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHH--Hhhe
Confidence 3999999999975 5699999999999999999999999999999999999999999999999998765 3332 3369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChHHHHHHHHH
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVALA 238 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGGqrQRVaIA 238 (382)
+||||++.+|+. |++|||.++. ...+ ++++.++++.++++++.++.| ..||||||||++||
T Consensus 411 ~~V~Q~~~lF~~-TI~eNI~~g~---~~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiA 482 (529)
T TIGR02868 411 SVFAQDAHLFDT-TVRDNLRLGR---PDAT----DEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALA 482 (529)
T ss_pred EEEccCcccccc-cHHHHHhccC---CCCC----HHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHH
Confidence 999999999985 9999998852 1122 345778899999987766654 57999999999999
Q ss_pred HHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCH
Q 016804 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQH 303 (382)
Q Consensus 239 rAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl 303 (382)
|||++ +|+|||||||||+||++++..+++.|.++.++ +|+|+|||++
T Consensus 483 Rall~-------~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~-----------~TvIiItHrl 529 (529)
T TIGR02868 483 RALLA-------DAPILLLDEPTEHLDAGTESELLEDLLAALSG-----------KTVVVITHHL 529 (529)
T ss_pred HHHhc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCC-----------CEEEEEecCC
Confidence 99997 59999999999999999999999999987543 5999999984
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-46 Score=349.50 Aligned_cols=205 Identities=30% Similarity=0.484 Sum_probs=172.9
Q ss_pred EEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 92 IDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 92 I~~~nvs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... .... +.++
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~-~~~i 80 (221)
T cd03244 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIG-LHDL-RSRI 80 (221)
T ss_pred EEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCC-HHHH-hhhE
Confidence 789999999964 47999999999999999999999999999999999999999999999999865432 1222 3369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccc-----------cCCCCCCChHHHHHHHHH
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVE-----------DRLPSELSGGMKKRVALA 238 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~-----------~~~~~~LSGGqrQRVaIA 238 (382)
+|+||++.+++ .|++||+.+.. .... +++.++++.+++.+.. ++++.+||||||||++||
T Consensus 81 ~~~~q~~~l~~-~tv~enl~~~~----~~~~----~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~la 151 (221)
T cd03244 81 SIIPQDPVLFS-GTIRSNLDPFG----EYSD----EELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLA 151 (221)
T ss_pred EEECCCCcccc-chHHHHhCcCC----CCCH----HHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHH
Confidence 99999999887 59999996531 1222 2345566666665544 468899999999999999
Q ss_pred HHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccc
Q 016804 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQI 318 (382)
Q Consensus 239 rAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~ 318 (382)
|||+. +|++|||||||++||+.++..+.++|+++.+ + .|+|++||+++++.. ||++
T Consensus 152 ral~~-------~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~----------~tii~~sh~~~~~~~-~d~i----- 207 (221)
T cd03244 152 RALLR-------KSKILVLDEATASVDPETDALIQKTIREAFK-D----------CTVLTIAHRLDTIID-SDRI----- 207 (221)
T ss_pred HHHhc-------CCCEEEEeCccccCCHHHHHHHHHHHHHhcC-C----------CEEEEEeCCHHHHhh-CCEE-----
Confidence 99997 6999999999999999999999999999864 3 499999999999975 8877
Q ss_pred cccchheehhccCCCCcccccccEEEEEeCCeEEEEec
Q 016804 319 FGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGM 356 (382)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~ 356 (382)
++|++|++++.|+
T Consensus 208 -------------------------~~l~~g~~~~~~~ 220 (221)
T cd03244 208 -------------------------LVLDKGRVVEFDS 220 (221)
T ss_pred -------------------------EEEECCeEEecCC
Confidence 9999999998774
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-46 Score=382.88 Aligned_cols=221 Identities=33% Similarity=0.513 Sum_probs=189.5
Q ss_pred EEEEeEEEEeCCee-eeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 92 IDCRNVYKSFGEKH-ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 92 I~~~nvs~~yg~~~-iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
|+++||+++|++++ +|+++||+|++||.+||+|+|||||||++|+|.++.+ ++|+|++||+++.....+.. |.-||
T Consensus 352 I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~Sl--R~~Ig 428 (591)
T KOG0057|consen 352 IEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESL--RQSIG 428 (591)
T ss_pred EEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHh--hhhee
Confidence 99999999998766 9999999999999999999999999999999999999 99999999999876543332 33599
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChHHHHHHHHHH
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVALAR 239 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGGqrQRVaIAr 239 (382)
||||+..||+. ||.+||.++.. ..+ .+++.++++++|+++...+.| ..|||||||||+|||
T Consensus 429 ~VPQd~~LFnd-TIl~NI~YGn~---sas----~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaR 500 (591)
T KOG0057|consen 429 VVPQDSVLFND-TILYNIKYGNP---SAS----DEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLAR 500 (591)
T ss_pred EeCCcccccch-hHHHHhhcCCC---CcC----HHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHH
Confidence 99999999985 99999998642 122 345778899999988777776 469999999999999
Q ss_pred HHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccc
Q 016804 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIF 319 (382)
Q Consensus 240 AL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~ 319 (382)
|+++| |+|+++|||||+||.++++++.+.+..... + +|+|+|.|+++++.++ |
T Consensus 501 a~lKd-------a~Il~~DEaTS~LD~~TE~~i~~~i~~~~~-~----------rTvI~IvH~l~ll~~~-D-------- 553 (591)
T KOG0057|consen 501 AFLKD-------APILLLDEATSALDSETEREILDMIMDVMS-G----------RTVIMIVHRLDLLKDF-D-------- 553 (591)
T ss_pred HHhcC-------CCeEEecCcccccchhhHHHHHHHHHHhcC-C----------CeEEEEEecchhHhcC-C--------
Confidence 99985 999999999999999999999999998433 3 5999999999999874 5
Q ss_pred ccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHHc
Q 016804 320 GHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFAS 373 (382)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 373 (382)
+|++|++|++.+.|+.+|++. ......++..
T Consensus 554 ----------------------kI~~l~nG~v~e~gth~ell~-~s~~~~~~w~ 584 (591)
T KOG0057|consen 554 ----------------------KIIVLDNGTVKEYGTHSELLA-PSELYADLWT 584 (591)
T ss_pred ----------------------EEEEEECCeeEEeccHHHHhh-hhhHHHHHhc
Confidence 559999999999998888876 4455555443
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-46 Score=346.04 Aligned_cols=194 Identities=30% Similarity=0.435 Sum_probs=170.9
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
+|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.. . . .+.+++
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~-~--~~~~~~ 76 (207)
T PRK13539 2 MLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--P-D--VAEACH 76 (207)
T ss_pred EEEEEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--h-h--hHhhcE
Confidence 6899999999998889999999999999999999999999999999999999999999999987531 1 1 233699
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
|++|++.+++.+|+.||+.+..... ... .+.+.++++.+|+.+..++++.+||||||||++|||||+.
T Consensus 77 ~~~~~~~~~~~~tv~~~l~~~~~~~-~~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~------- 144 (207)
T PRK13539 77 YLGHRNAMKPALTVAENLEFWAAFL-GGE----ELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVS------- 144 (207)
T ss_pred EecCCCcCCCCCcHHHHHHHHHHhc-CCc----HHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhc-------
Confidence 9999988888899999998754221 111 2347889999999888899999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|++|||||||+|||+.++..+.++|+++.+++ .|+|++||+++++.. |++
T Consensus 145 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tiii~sH~~~~~~~--~~~ 195 (207)
T PRK13539 145 NRPIWILDEPTAALDAAAVALFAELIRAHLAQG----------GIVIAATHIPLGLPG--ARE 195 (207)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCchhhcc--CcE
Confidence 699999999999999999999999999987766 599999999999886 877
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-46 Score=343.86 Aligned_cols=196 Identities=26% Similarity=0.357 Sum_probs=171.2
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
||+++||+++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... ... .+.+++
T Consensus 1 ml~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~--~~~-~~~~i~ 77 (200)
T PRK13540 1 MLDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKD--LCT-YQKQLC 77 (200)
T ss_pred CEEEEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccC--HHH-HHhheE
Confidence 58999999999988999999999999999999999999999999999999999999999999876431 111 233699
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
|++|++.+++.+||++|+.+.... ... ...+.++++.+++.+..++++.+||||||||++|||||+.
T Consensus 78 ~~~q~~~~~~~~tv~~~~~~~~~~----~~~--~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~------- 144 (200)
T PRK13540 78 FVGHRSGINPYLTLRENCLYDIHF----SPG--AVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMS------- 144 (200)
T ss_pred EeccccccCcCCCHHHHHHHHHhc----Ccc--hHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhc-------
Confidence 999999998889999999886421 111 2357889999999888889999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|++|||||||++||+.++..+.+.|+++++++ .|+|++||+.+.+.. ||.-
T Consensus 145 ~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~----------~tiii~sh~~~~~~~-~d~~ 196 (200)
T PRK13540 145 KAKLWLLDEPLVALDELSLLTIITKIQEHRAKG----------GAVLLTSHQDLPLNK-ADYE 196 (200)
T ss_pred CCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcC----------CEEEEEeCCchhccc-cchh
Confidence 699999999999999999999999999997665 599999999988865 7754
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-46 Score=339.73 Aligned_cols=170 Identities=30% Similarity=0.491 Sum_probs=151.4
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
+++|+++|++++| +|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...... ...+.+
T Consensus 2 ~~~l~~~~l~~~~----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~-~~~~~~ 76 (182)
T cd03215 2 EPVLEVRGLSVKG----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPR-DAIRAG 76 (182)
T ss_pred CcEEEEeccEEEe----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHH-HHHhCC
Confidence 3579999999999 99999999999999999999999999999999999999999999999987653212 222346
Q ss_pred EEEEecCC---CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCC
Q 016804 169 IGLVFQSA---ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (382)
Q Consensus 169 Ig~V~Q~~---~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~ 245 (382)
++|+||++ .+++.+|++||+.+... ||||||||++|||||+.
T Consensus 77 i~~~~q~~~~~~~~~~~t~~e~l~~~~~---------------------------------LS~G~~qrl~la~al~~-- 121 (182)
T cd03215 77 IAYVPEDRKREGLVLDLSVAENIALSSL---------------------------------LSGGNQQKVVLARWLAR-- 121 (182)
T ss_pred eEEecCCcccCcccCCCcHHHHHHHHhh---------------------------------cCHHHHHHHHHHHHHcc--
Confidence 99999995 57888999999976320 99999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 246 ~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|++|||||||++||+.++..+.++|+++.+++ .|+|++||+++++.++||++
T Consensus 122 -----~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~----------~tiii~sh~~~~~~~~~d~v 174 (182)
T cd03215 122 -----DPRVLILDEPTRGVDVGAKAEIYRLIRELADAG----------KAVLLISSELDELLGLCDRI 174 (182)
T ss_pred -----CCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHhCCEE
Confidence 699999999999999999999999999997665 59999999999999999988
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-46 Score=342.95 Aligned_cols=200 Identities=26% Similarity=0.432 Sum_probs=169.0
Q ss_pred ceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccc
Q 016804 90 VLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (382)
Q Consensus 90 ~~I~~~nvs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~ 167 (382)
..|+++|++++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... .... +.
T Consensus 5 ~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~-~~ 82 (207)
T cd03369 5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIP-LEDL-RS 82 (207)
T ss_pred CeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCC-HHHH-Hh
Confidence 34999999999975 47999999999999999999999999999999999999999999999999875422 2221 33
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 016804 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (382)
Q Consensus 168 ~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~ 247 (382)
+|+|+||++.+|+ .|++||+.+.. ....+ .+.++++ .++++.+||||||||++|||||+.
T Consensus 83 ~i~~v~q~~~~~~-~tv~~~l~~~~----~~~~~----~~~~~l~-------~~~~~~~LS~G~~qrv~laral~~---- 142 (207)
T cd03369 83 SLTIIPQDPTLFS-GTIRSNLDPFD----EYSDE----EIYGALR-------VSEGGLNLSQGQRQLLCLARALLK---- 142 (207)
T ss_pred hEEEEecCCcccC-ccHHHHhcccC----CCCHH----HHHHHhh-------ccCCCCcCCHHHHHHHHHHHHHhh----
Confidence 6999999999887 59999996521 12221 2333443 467899999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheeh
Q 016804 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVII 327 (382)
Q Consensus 248 ~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~ 327 (382)
+|++|||||||++||+.++..+.++|+++. ++ .|+|++||+++++.. ||++
T Consensus 143 ---~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~----------~tiii~th~~~~~~~-~d~v-------------- 193 (207)
T cd03369 143 ---RPRVLVLDEATASIDYATDALIQKTIREEF-TN----------STILTIAHRLRTIID-YDKI-------------- 193 (207)
T ss_pred ---CCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CC----------CEEEEEeCCHHHHhh-CCEE--------------
Confidence 699999999999999999999999999985 34 599999999999876 8877
Q ss_pred hccCCCCcccccccEEEEEeCCeEEEEec
Q 016804 328 LGAVAPDKEVFFIYRLIFLYEGKIVWQGM 356 (382)
Q Consensus 328 ~~~~~~~~~~~~~~~ii~l~~G~i~~~g~ 356 (382)
++|++|++++.|+
T Consensus 194 ----------------~~l~~g~i~~~g~ 206 (207)
T cd03369 194 ----------------LVMDAGEVKEYDH 206 (207)
T ss_pred ----------------EEEECCEEEecCC
Confidence 9999999998874
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-46 Score=357.17 Aligned_cols=228 Identities=22% Similarity=0.340 Sum_probs=184.4
Q ss_pred ceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccc
Q 016804 90 VLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (382)
Q Consensus 90 ~~I~~~nvs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~ 167 (382)
..|+++|++++|++ +.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|+++.... ... .+.
T Consensus 18 ~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~-~~~-~~~ 95 (257)
T cd03288 18 GEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLP-LHT-LRS 95 (257)
T ss_pred ceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCC-HHH-Hhh
Confidence 46999999999976 57999999999999999999999999999999999999999999999999875432 112 233
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHH-----HHHHHHHHc--CCcccccCCCCCCChHHHHHHHHHHH
Q 016804 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISE-----LVKENLAAV--GLKGVEDRLPSELSGGMKKRVALARS 240 (382)
Q Consensus 168 ~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~-----~v~~~L~~~--gL~~~~~~~~~~LSGGqrQRVaIArA 240 (382)
+|+|+||++.+|+ .|+++|+.... . .......+ .+.+.++.+ +++...++.+.+||||||||++||||
T Consensus 96 ~i~~v~q~~~l~~-~tv~~nl~~~~---~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~lara 170 (257)
T cd03288 96 RLSIILQDPILFS-GSIRFNLDPEC---K-CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARA 170 (257)
T ss_pred hEEEECCCCcccc-cHHHHhcCcCC---C-CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHH
Confidence 6999999999887 59999985421 1 11111111 123344444 55555666778999999999999999
Q ss_pred HhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccc
Q 016804 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFG 320 (382)
Q Consensus 241 L~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~ 320 (382)
|+. +|++|||||||+|||+.++..+.++++++.+ + .|+|++||+++.+.. |||+
T Consensus 171 l~~-------~p~llllDEPt~gLD~~~~~~l~~~l~~~~~-~----------~tiii~sh~~~~~~~-~dri------- 224 (257)
T cd03288 171 FVR-------KSSILIMDEATASIDMATENILQKVVMTAFA-D----------RTVVTIAHRVSTILD-ADLV------- 224 (257)
T ss_pred Hhc-------CCCEEEEeCCccCCCHHHHHHHHHHHHHhcC-C----------CEEEEEecChHHHHh-CCEE-------
Confidence 997 6999999999999999999999999998754 4 599999999999975 8877
Q ss_pred cchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHHc
Q 016804 321 HIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFAS 373 (382)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 373 (382)
++|++|++++.|+++++....+...+.++.
T Consensus 225 -----------------------~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 254 (257)
T cd03288 225 -----------------------LVLSRGILVECDTPENLLAQEDGVFASLVR 254 (257)
T ss_pred -----------------------EEEECCEEEEeCCHHHHHhccchHHHHHHh
Confidence 999999999999888876555555555544
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-46 Score=386.80 Aligned_cols=220 Identities=25% Similarity=0.402 Sum_probs=188.5
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
.++|+++|+++ .+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... ......+.+
T Consensus 255 ~~~l~~~~l~~-----~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~-~~~~~~~~~ 328 (501)
T PRK10762 255 EVRLKVDNLSG-----PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTR-SPQDGLANG 328 (501)
T ss_pred CcEEEEeCccc-----CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCC-CHHHHHHCC
Confidence 46899999995 379999999999999999999999999999999999999999999999987543 221222336
Q ss_pred EEEEecCC---CCCCCCCHHHHHHhhHhh-cC---C-CCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHHHH
Q 016804 169 IGLVFQSA---ALFDSLTVRENVGFLLYE-NS---K-MRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALAR 239 (382)
Q Consensus 169 Ig~V~Q~~---~l~~~lTV~eni~~~~~~-~~---~-~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaIAr 239 (382)
||||||++ .+++.+||.||+.++... .. + ....+..+++.++++.+++. +..++++.+|||||||||+|||
T Consensus 329 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~ 408 (501)
T PRK10762 329 IVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIAR 408 (501)
T ss_pred CEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHH
Confidence 99999996 578889999999875321 10 1 22334456688999999995 6789999999999999999999
Q ss_pred HHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccc
Q 016804 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIF 319 (382)
Q Consensus 240 AL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~ 319 (382)
||+. +|++|||||||+|||+.++..+.++|+++.++| .|+|++|||++++.++|||+
T Consensus 409 al~~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g----------~tviivtHd~~~~~~~~d~v------ 465 (501)
T PRK10762 409 GLMT-------RPKVLILDEPTRGVDVGAKKEIYQLINQFKAEG----------LSIILVSSEMPEVLGMSDRI------ 465 (501)
T ss_pred HHhh-------CCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCC----------CEEEEEcCCHHHHHhhCCEE------
Confidence 9997 699999999999999999999999999998766 59999999999999999988
Q ss_pred ccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 320 GHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|+++..|+++++.
T Consensus 466 ------------------------~~l~~G~i~~~~~~~~~~ 483 (501)
T PRK10762 466 ------------------------LVMHEGRISGEFTREQAT 483 (501)
T ss_pred ------------------------EEEECCEEEEEeccccCC
Confidence 999999999999877764
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-46 Score=341.20 Aligned_cols=183 Identities=37% Similarity=0.561 Sum_probs=163.0
Q ss_pred eEEEEeEEEEeCC------eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC--CCCccEEEECCEECCCCCChh
Q 016804 91 LIDCRNVYKSFGE------KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL--APDKGEVYIRGRKRAGLISDE 162 (382)
Q Consensus 91 ~I~~~nvs~~yg~------~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~--~p~sG~I~i~G~~i~~~~~~~ 162 (382)
.|+++||+++|++ +++|+++||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|+++.. .
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~----~ 78 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK----R 78 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch----H
Confidence 4899999999975 67999999999999999999999999999999999999 9999999999998642 1
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHh
Q 016804 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSII 242 (382)
Q Consensus 163 ~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~ 242 (382)
. .+.+++|+||++.+|+.+|++||+.+.... . +||||||||++|||||+
T Consensus 79 ~-~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~-------------~-----------------~LS~G~~qrv~laral~ 127 (194)
T cd03213 79 S-FRKIIGYVPQDDILHPTLTVRETLMFAAKL-------------R-----------------GLSGGERKRVSIALELV 127 (194)
T ss_pred h-hhheEEEccCcccCCCCCcHHHHHHHHHHh-------------c-----------------cCCHHHHHHHHHHHHHH
Confidence 1 233699999999999989999999763210 0 89999999999999999
Q ss_pred cCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHH-HHHHhhchhcccccccc
Q 016804 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS-TIRRAVDRLCLFQIFGH 321 (382)
Q Consensus 243 ~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~-~~~~~aDrv~~~~~~~~ 321 (382)
. +|++|||||||++||+.+++.+.++|+++.+++ .|+|++|||++ ++..+|||+
T Consensus 128 ~-------~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~----------~tiii~sh~~~~~~~~~~d~v-------- 182 (194)
T cd03213 128 S-------NPSLLFLDEPTSGLDSSSALQVMSLLRRLADTG----------RTIICSIHQPSSEIFELFDKL-------- 182 (194)
T ss_pred c-------CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCC----------CEEEEEecCchHHHHHhcCEE--------
Confidence 7 699999999999999999999999999997765 59999999996 788899988
Q ss_pred chheehhccCCCCcccccccEEEEEeCCeEEEEe
Q 016804 322 IDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQG 355 (382)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g 355 (382)
++|++|++++.|
T Consensus 183 ----------------------~~l~~G~i~~~~ 194 (194)
T cd03213 183 ----------------------LLLSQGRVIYFG 194 (194)
T ss_pred ----------------------EEEeCCEEEecC
Confidence 999999998754
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-46 Score=377.53 Aligned_cols=219 Identities=29% Similarity=0.423 Sum_probs=200.4
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
+.+++++++|+|++..++++|||+|++||+.||+|.||||||||+++|.|+++||+|+|+++|+++.- .+..+..+..|
T Consensus 3 ~~l~~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~-~sP~dA~~~GI 81 (501)
T COG3845 3 PALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRI-KSPRDAIRLGI 81 (501)
T ss_pred ceEEEeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEecc-CCHHHHHHcCC
Confidence 46999999999999999999999999999999999999999999999999999999999999999754 34555556679
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhc--CCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYEN--SKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~--~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~ 247 (382)
|+|+|++.|++.+||.|||.++.... ...+..+..++++++.+++||.-..++++++||-||||||.|-+||.+
T Consensus 82 GMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr---- 157 (501)
T COG3845 82 GMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYR---- 157 (501)
T ss_pred cEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhc----
Confidence 99999999999999999999976321 234677888899999999999988899999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheeh
Q 016804 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVII 327 (382)
Q Consensus 248 ~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~ 327 (382)
+|++|||||||+-|-|...+++++.|++|+++| +|||+|||.++++.++|||+
T Consensus 158 ---~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G----------~tIi~ITHKL~Ev~~iaDrv-------------- 210 (501)
T COG3845 158 ---GARLLILDEPTAVLTPQEADELFEILRRLAAEG----------KTIIFITHKLKEVMAIADRV-------------- 210 (501)
T ss_pred ---CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCC----------CEEEEEeccHHHHHHhhCee--------------
Confidence 599999999999999999999999999999998 59999999999999999988
Q ss_pred hccCCCCcccccccEEEEEeCCeEEEEec
Q 016804 328 LGAVAPDKEVFFIYRLIFLYEGKIVWQGM 356 (382)
Q Consensus 328 ~~~~~~~~~~~~~~~ii~l~~G~i~~~g~ 356 (382)
-||..||++...+
T Consensus 211 ----------------TVLR~Gkvvgt~~ 223 (501)
T COG3845 211 ----------------TVLRRGKVVGTVD 223 (501)
T ss_pred ----------------EEEeCCeEEeeec
Confidence 8899999877665
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-46 Score=341.05 Aligned_cols=186 Identities=37% Similarity=0.597 Sum_probs=158.0
Q ss_pred eCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCC--C
Q 016804 101 FGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAA--L 178 (382)
Q Consensus 101 yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~--l 178 (382)
|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..........+.+++|+||++. +
T Consensus 2 ~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred CCccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 46678999999999999999999999999999999999999999999999999864211111112336999999983 5
Q ss_pred CCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEe
Q 016804 179 FDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYD 258 (382)
Q Consensus 179 ~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLD 258 (382)
|+ .|++||+.+..... +...++..+++.++++.+|+.+..++++.+||||||||++|||||+. +|++||||
T Consensus 82 ~~-~tv~~nl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~-------~p~llllD 152 (190)
T TIGR01166 82 FA-ADVDQDVAFGPLNL-GLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAM-------RPDVLLLD 152 (190)
T ss_pred cc-ccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhc-------CCCEEEEc
Confidence 64 79999998864322 23445556678899999999989999999999999999999999997 69999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHH
Q 016804 259 EPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHST 305 (382)
Q Consensus 259 EPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~ 305 (382)
|||+|||+.++..+.++|+++++++ .|+|++|||+++
T Consensus 153 EPt~~LD~~~~~~~~~~l~~~~~~~----------~tili~sH~~~~ 189 (190)
T TIGR01166 153 EPTAGLDPAGREQMLAILRRLRAEG----------MTVVISTHDVDL 189 (190)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcC----------CEEEEEeecccc
Confidence 9999999999999999999998765 599999999875
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-46 Score=357.30 Aligned_cols=199 Identities=34% Similarity=0.589 Sum_probs=180.6
Q ss_pred ceEEEEeEEEEeCC---------eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCC
Q 016804 90 VLIDCRNVYKSFGE---------KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS 160 (382)
Q Consensus 90 ~~I~~~nvs~~yg~---------~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~ 160 (382)
++++++||+|.|.. ..+++||||+|++||++||||+||||||||-|+|+||++|++|+|+++|+++..+
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~-- 80 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKL-- 80 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhc--
Confidence 57999999999953 3799999999999999999999999999999999999999999999999885432
Q ss_pred hhhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHHHH
Q 016804 161 DEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALAR 239 (382)
Q Consensus 161 ~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaIAr 239 (382)
. .++..+++.++|+.+|+. ++++|+|++|||||+||++|||
T Consensus 81 ---------~-----------------------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IAR 122 (268)
T COG4608 81 ---------S-----------------------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIAR 122 (268)
T ss_pred ---------c-----------------------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHH
Confidence 1 234566789999999996 5899999999999999999999
Q ss_pred HHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccc
Q 016804 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIF 319 (382)
Q Consensus 240 AL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~ 319 (382)
||+. +|+++++|||+|+||...+.++.++|.+++++-+ .|+++||||++.+..+|||+
T Consensus 123 ALal-------~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~---------lt~lFIsHDL~vv~~isdri------ 180 (268)
T COG4608 123 ALAL-------NPKLIVADEPVSALDVSVQAQILNLLKDLQEELG---------LTYLFISHDLSVVRYISDRI------ 180 (268)
T ss_pred HHhh-------CCcEEEecCchhhcchhHHHHHHHHHHHHHHHhC---------CeEEEEEEEHHhhhhhcccE------
Confidence 9986 7999999999999999999999999999988732 69999999999999999988
Q ss_pred ccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 320 GHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
+||+.|+|++.|.+++++ ++.||+++.+++.
T Consensus 181 ------------------------~VMy~G~iVE~g~~~~~~~~p~HpYTk~Ll~a 212 (268)
T COG4608 181 ------------------------AVMYLGKIVEIGPTEEVFSNPLHPYTKALLSA 212 (268)
T ss_pred ------------------------EEEecCceeEecCHHHHhhCCCCHHHHHHHHh
Confidence 999999999999998865 6889999998875
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-46 Score=341.60 Aligned_cols=192 Identities=29% Similarity=0.429 Sum_probs=164.9
Q ss_pred eEEEEeEEEEeC----CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC---CCccEEEECCEECCCCCChhh
Q 016804 91 LIDCRNVYKSFG----EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA---PDKGEVYIRGRKRAGLISDEE 163 (382)
Q Consensus 91 ~I~~~nvs~~yg----~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~---p~sG~I~i~G~~i~~~~~~~~ 163 (382)
.+.++||+|.|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|.++.... ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~--~~ 80 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA--EK 80 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch--hh
Confidence 578999999995 4579999999999999999999999999999999999999 89999999999875421 11
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhc
Q 016804 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIF 243 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~ 243 (382)
.+.+++|+||++.+|+.+||+||+.+.... . .++++.+||||||||++|||||+.
T Consensus 81 -~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-------------~-----------~~~~~~~LS~Ge~qrl~laral~~ 135 (202)
T cd03233 81 -YPGEIIYVSEEDVHFPTLTVRETLDFALRC-------------K-----------GNEFVRGISGGERKRVSIAEALVS 135 (202)
T ss_pred -hcceEEEEecccccCCCCcHHHHHhhhhhh-------------c-----------cccchhhCCHHHHHHHHHHHHHhh
Confidence 233699999999999989999999774310 0 567889999999999999999997
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEE-EccCHHHHHHhhchhccccccccc
Q 016804 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVV-VTHQHSTIRRAVDRLCLFQIFGHI 322 (382)
Q Consensus 244 ~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIi-vTHdl~~~~~~aDrv~~~~~~~~~ 322 (382)
+|++|||||||++||+.+++.+.++|+++.++++ .|+|+ ++|+.+++.++||++
T Consensus 136 -------~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~---------~t~ii~~~h~~~~~~~~~d~i--------- 190 (202)
T cd03233 136 -------RASVLCWDNSTRGLDSSTALEILKCIRTMADVLK---------TTTFVSLYQASDEIYDLFDKV--------- 190 (202)
T ss_pred -------CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCC---------CEEEEEEcCCHHHHHHhCCeE---------
Confidence 6999999999999999999999999999987521 35555 556678999999988
Q ss_pred hheehhccCCCCcccccccEEEEEeCCeEEEEe
Q 016804 323 DVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQG 355 (382)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g 355 (382)
++|++|++++.|
T Consensus 191 ---------------------~~l~~G~i~~~g 202 (202)
T cd03233 191 ---------------------LVLYEGRQIYYG 202 (202)
T ss_pred ---------------------EEEECCEEEecC
Confidence 999999998754
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-46 Score=341.72 Aligned_cols=188 Identities=32% Similarity=0.564 Sum_probs=164.6
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC--CCCCccEEEECCEECCCCCChhhhccceE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--LAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl--~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
|+++|++++|+++.+|+|+||++++||+++|+||||||||||+++|+|+ ++|++|+|+++|+++.... .....+.++
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~-~~~~~~~~i 79 (200)
T cd03217 1 LEIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLP-PEERARLGI 79 (200)
T ss_pred CeEEEEEEEeCCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCC-HHHHhhCcE
Confidence 4789999999988899999999999999999999999999999999999 5899999999999876532 222223359
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
+|+||++.+|+.+++++++ ++.+.+||||||||++|||||+.
T Consensus 80 ~~v~q~~~~~~~~~~~~~l--------------------------------~~~~~~LS~G~~qrv~laral~~------ 121 (200)
T cd03217 80 FLAFQYPPEIPGVKNADFL--------------------------------RYVNEGFSGGEKKRNEILQLLLL------ 121 (200)
T ss_pred EEeecChhhccCccHHHHH--------------------------------hhccccCCHHHHHHHHHHHHHhc------
Confidence 9999999999888888776 12346899999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHH-hhchhccccccccchheehh
Q 016804 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRR-AVDRLCLFQIFGHIDVVIIL 328 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~-~aDrv~~~~~~~~~~~~~~~ 328 (382)
+|++|||||||++||+.++..+.++|+++++++ .|+|++||+++.+.+ +|||+
T Consensus 122 -~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~----------~tiii~sh~~~~~~~~~~d~i--------------- 175 (200)
T cd03217 122 -EPDLAILDEPDSGLDIDALRLVAEVINKLREEG----------KSVLIITHYQRLLDYIKPDRV--------------- 175 (200)
T ss_pred -CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCC----------CEEEEEecCHHHHHHhhCCEE---------------
Confidence 699999999999999999999999999997765 599999999999987 78877
Q ss_pred ccCCCCcccccccEEEEEeCCeEEEEeccccc
Q 016804 329 GAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEF 360 (382)
Q Consensus 329 ~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~ 360 (382)
++|++|++++.| +.++
T Consensus 176 ---------------~~l~~G~i~~~~-~~~~ 191 (200)
T cd03217 176 ---------------HVLYDGRIVKSG-DKEL 191 (200)
T ss_pred ---------------EEEECCEEEEEc-cHHH
Confidence 999999999998 4443
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-46 Score=340.84 Aligned_cols=195 Identities=35% Similarity=0.520 Sum_probs=169.2
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
|+++|++++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... . . .+.+++|
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~-~-~~~~i~~ 77 (198)
T TIGR01189 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-D-E-PHRNILY 77 (198)
T ss_pred CEEEEEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-H-H-hhhheEE
Confidence 47899999999999999999999999999999999999999999999999999999999999875431 1 1 2336999
Q ss_pred EecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCC
Q 016804 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~ 251 (382)
++|++.+++.+|+.+|+.+...... .+ .+.+.++++.+++.+..++++.+||||||||++|||||+. +
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~---~~--~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~-------~ 145 (198)
T TIGR01189 78 LGHLPGLKPELSALENLHFWAAIHG---GA--QRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLS-------R 145 (198)
T ss_pred eccCcccccCCcHHHHHHHHHHHcC---Cc--HHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhc-------C
Confidence 9999999988999999987543221 11 3457789999999988999999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 252 P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
|++|||||||++||+.++..+.++|+++++++ .|+|++||+...+. |+|+
T Consensus 146 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tii~~sH~~~~~~--~~~~ 195 (198)
T TIGR01189 146 APLWILDEPTTALDKAGVALLAGLLRAHLARG----------GIVLLTTHQDLGLV--EARE 195 (198)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCC----------CEEEEEEccccccc--ceEE
Confidence 99999999999999999999999999997766 49999999986543 4554
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-46 Score=338.94 Aligned_cols=183 Identities=30% Similarity=0.476 Sum_probs=161.3
Q ss_pred ceEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC--CCCccEEEECCEECCCCCChhh
Q 016804 90 VLIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL--APDKGEVYIRGRKRAGLISDEE 163 (382)
Q Consensus 90 ~~I~~~nvs~~yg~----~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~--~p~sG~I~i~G~~i~~~~~~~~ 163 (382)
..|+++|++++|++ +++|+++||+|++||+++|+||||||||||+++|+|+. +|++|+|.++|+++. ..
T Consensus 2 ~~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~-----~~ 76 (192)
T cd03232 2 SVLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD-----KN 76 (192)
T ss_pred cEEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH-----HH
Confidence 35899999999974 67999999999999999999999999999999999986 489999999999863 11
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhc
Q 016804 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIF 243 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~ 243 (382)
.+.+++|++|++.+|+.+|++||+.+... ++ +||||||||++|||||+.
T Consensus 77 -~~~~i~~~~q~~~~~~~~tv~~~l~~~~~-----------------~~-------------~LSgGe~qrv~la~al~~ 125 (192)
T cd03232 77 -FQRSTGYVEQQDVHSPNLTVREALRFSAL-----------------LR-------------GLSVEQRKRLTIGVELAA 125 (192)
T ss_pred -hhhceEEecccCccccCCcHHHHHHHHHH-----------------Hh-------------cCCHHHhHHHHHHHHHhc
Confidence 12369999999999998999999986421 00 899999999999999997
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHH-HHHHhhchhccccccccc
Q 016804 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS-TIRRAVDRLCLFQIFGHI 322 (382)
Q Consensus 244 ~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~-~~~~~aDrv~~~~~~~~~ 322 (382)
+|++|||||||++||+.++..+++.|+++++++ .|+|++||+++ .+.++|||+
T Consensus 126 -------~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~----------~tiiivtH~~~~~~~~~~d~i--------- 179 (192)
T cd03232 126 -------KPSILFLDEPTSGLDSQAAYNIVRFLKKLADSG----------QAILCTIHQPSASIFEKFDRL--------- 179 (192)
T ss_pred -------CCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcC----------CEEEEEEcCChHHHHhhCCEE---------
Confidence 699999999999999999999999999998765 59999999998 478888877
Q ss_pred hheehhccCCCCcccccccEEEEEeC-CeEEEEe
Q 016804 323 DVVIILGAVAPDKEVFFIYRLIFLYE-GKIVWQG 355 (382)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~ii~l~~-G~i~~~g 355 (382)
++|++ |++++.|
T Consensus 180 ---------------------~~l~~~g~i~~~g 192 (192)
T cd03232 180 ---------------------LLLKRGGKTVYFG 192 (192)
T ss_pred ---------------------EEEcCCCeEEeCC
Confidence 99998 9998765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-46 Score=387.10 Aligned_cols=251 Identities=27% Similarity=0.405 Sum_probs=196.0
Q ss_pred hhhHhHhhHHhhhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCC
Q 016804 9 SLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDG 88 (382)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (382)
.+.+...+..++.++..+++.. .....++...+|+.+.+..|+...... ... ...
T Consensus 263 ~~~~~~~~~~~~~pl~~l~~~~-----~~~~~~~~~~~ri~~ll~~~~~~~~~~-----------------~~~-~~~-- 317 (529)
T TIGR02857 263 GLFVLLLAPEFYLPLRQLGADY-----HARADGVAAAEALFAVLDAPRPLAGKA-----------------PVT-AAP-- 317 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhCCCcccCCCc-----------------CCC-CCC--
Confidence 3344444445566666665555 667788888999998886442111000 000 011
Q ss_pred cceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhcc
Q 016804 89 DVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~ 166 (382)
...|+++||+|+|++ +++|+|+||+|++||.++|+||||||||||+|+|+|+++|++|+|.++|.++....... . +
T Consensus 318 ~~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~-l-r 395 (529)
T TIGR02857 318 APSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADS-W-R 395 (529)
T ss_pred CCeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHH-H-H
Confidence 124999999999975 46999999999999999999999999999999999999999999999999987653332 2 3
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChHHHHHH
Q 016804 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRV 235 (382)
Q Consensus 167 ~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGGqrQRV 235 (382)
.+|+||+|++.+|+ .|++||+.++.. ..+ ++++.++++.++++++.++.| .+||||||||+
T Consensus 396 ~~i~~v~Q~~~lf~-~ti~~Ni~~~~~---~~~----~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri 467 (529)
T TIGR02857 396 DQIAWVPQHPFLFA-GTIAENIRLARP---DAS----DAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRL 467 (529)
T ss_pred hheEEEcCCCcccC-cCHHHHHhccCC---CCC----HHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHH
Confidence 36999999999997 599999987531 122 244677888888876655543 67999999999
Q ss_pred HHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 236 ALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 236 aIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|||||++ +|++|||||||++||+.+++.+++.++++.+ + +|+|+|||+++.+. .||+|
T Consensus 468 ~laRal~~-------~~~ililDE~ts~lD~~~~~~i~~~l~~~~~-~----------~t~i~itH~~~~~~-~~d~i 526 (529)
T TIGR02857 468 ALARAFLR-------DAPLLLLDEPTAHLDAETEALVTEALRALAQ-G----------RTVLLVTHRLALAE-RADRI 526 (529)
T ss_pred HHHHHHhc-------CCCEEEEeCcccccCHHHHHHHHHHHHHhcC-C----------CEEEEEecCHHHHH-hCCEE
Confidence 99999997 5999999999999999999999999999853 3 59999999999985 58887
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-46 Score=385.46 Aligned_cols=221 Identities=23% Similarity=0.365 Sum_probs=188.1
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
.+.++++|+++. .+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++... ......+.+
T Consensus 255 ~~~l~~~~~~~~----~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~-~~~~~~~~~ 329 (501)
T PRK11288 255 EVRLRLDGLKGP----GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIR-SPRDAIRAG 329 (501)
T ss_pred CcEEEEeccccC----CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCC-CHHHHHhCC
Confidence 457999999842 589999999999999999999999999999999999999999999999987432 122222346
Q ss_pred EEEEecCC---CCCCCCCHHHHHHhhHhhcC---C--CCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHHHH
Q 016804 169 IGLVFQSA---ALFDSLTVRENVGFLLYENS---K--MRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALAR 239 (382)
Q Consensus 169 Ig~V~Q~~---~l~~~lTV~eni~~~~~~~~---~--~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaIAr 239 (382)
|+|+||++ .+|+.+|++||+.++..... + ......++.+.++++.+++. +..++++.+|||||||||+|||
T Consensus 330 i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~ 409 (501)
T PRK11288 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGR 409 (501)
T ss_pred CEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHH
Confidence 99999997 38888999999987532110 1 12223345678899999994 6789999999999999999999
Q ss_pred HHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccc
Q 016804 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIF 319 (382)
Q Consensus 240 AL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~ 319 (382)
||+. +|+||||||||+|||+.++.+++++|++++++| .|||+||||++++.++|||+
T Consensus 410 al~~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g----------~tviivsHd~~~~~~~~d~i------ 466 (501)
T PRK11288 410 WLSE-------DMKVILLDEPTRGIDVGAKHEIYNVIYELAAQG----------VAVLFVSSDLPEVLGVADRI------ 466 (501)
T ss_pred HHcc-------CCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCC----------CEEEEECCCHHHHHhhCCEE------
Confidence 9997 699999999999999999999999999998776 59999999999999999988
Q ss_pred ccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 320 GHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.|+++++.
T Consensus 467 ------------------------~~l~~g~i~~~~~~~~~~ 484 (501)
T PRK11288 467 ------------------------VVMREGRIAGELAREQAT 484 (501)
T ss_pred ------------------------EEEECCEEEEEEccccCC
Confidence 999999999999887754
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-46 Score=338.05 Aligned_cols=179 Identities=41% Similarity=0.680 Sum_probs=160.0
Q ss_pred EEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEE
Q 016804 93 DCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLV 172 (382)
Q Consensus 93 ~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V 172 (382)
+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... .... +..++|+
T Consensus 1 ~~~~l~~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~-~~~~-~~~i~~~ 78 (180)
T cd03214 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLS-PKEL-ARKIAYV 78 (180)
T ss_pred CeeEEEEEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCC-HHHH-HHHHhHH
Confidence 4789999998888999999999999999999999999999999999999999999999999875432 2111 2258888
Q ss_pred ecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCC
Q 016804 173 FQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEP 252 (382)
Q Consensus 173 ~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P 252 (382)
|| +++.+|+.+..++.+.+||||||||++|||||+. +|
T Consensus 79 ~q-----------------------------------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~-------~p 116 (180)
T cd03214 79 PQ-----------------------------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQ-------EP 116 (180)
T ss_pred HH-----------------------------------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhc-------CC
Confidence 88 5777888888889999999999999999999997 69
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccC
Q 016804 253 EVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAV 331 (382)
Q Consensus 253 ~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~ 331 (382)
+++||||||++||+.++..+.++|++++++ + .|+|++||+++++.++|||+
T Consensus 117 ~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~----------~tiii~sh~~~~~~~~~d~~------------------ 168 (180)
T cd03214 117 PILLLDEPTSHLDIAHQIELLELLRRLARERG----------KTVVMVLHDLNLAARYADRV------------------ 168 (180)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEE------------------
Confidence 999999999999999999999999999776 4 59999999999999999988
Q ss_pred CCCcccccccEEEEEeCCeEEEEe
Q 016804 332 APDKEVFFIYRLIFLYEGKIVWQG 355 (382)
Q Consensus 332 ~~~~~~~~~~~ii~l~~G~i~~~g 355 (382)
++|++|++++.|
T Consensus 169 ------------~~l~~g~i~~~~ 180 (180)
T cd03214 169 ------------ILLKDGRIVAQG 180 (180)
T ss_pred ------------EEEECCEEEecC
Confidence 899999987653
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-46 Score=424.34 Aligned_cols=265 Identities=22% Similarity=0.363 Sum_probs=204.3
Q ss_pred hhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCcceEEEEeEEEEeC---CeeeeEeeeE
Q 016804 36 SFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRNVYKSFG---EKHILRGVSF 112 (382)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvs~~yg---~~~iL~~vsl 112 (382)
....+++...+|+......|+.....+. ... ... ++.....-|+++||+|+|+ ++++|+|+||
T Consensus 1124 ~~~~~a~~a~~ri~~ll~~~~~~~~~~~------~~~-------~~~-~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl 1189 (1466)
T PTZ00265 1124 GDSENAKLSFEKYYPLIIRKSNIDVRDN------GGI-------RIK-NKNDIKGKIEIMDVNFRYISRPNVPIYKDLTF 1189 (1466)
T ss_pred HHHHHHHHHHHHHHHHHCCCCcCCCCCC------ccc-------ccc-cCCCCCceEEEEEEEEECCCCCCCccccCeeE
Confidence 4556777788888888876542100000 000 000 0001112399999999996 3479999999
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-------------------------------------------------
Q 016804 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLAP------------------------------------------------- 143 (382)
Q Consensus 113 ~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p------------------------------------------------- 143 (382)
+|++|+++|||||||||||||+++|+|+++|
T Consensus 1190 ~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1269 (1466)
T PTZ00265 1190 SCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGED 1269 (1466)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999998
Q ss_pred -----CccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc
Q 016804 144 -----DKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG 218 (382)
Q Consensus 144 -----~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~ 218 (382)
++|+|++||.++..+.... + +.+||||+|+|.||+ .||+|||.++.. ..+ ++.+.++++.+++++
T Consensus 1270 ~~~~~~~G~I~idG~di~~~~~~~-l-R~~i~~V~Qep~LF~-gTIreNI~~g~~---~at----~eeI~~A~k~A~l~~ 1339 (1466)
T PTZ00265 1270 STVFKNSGKILLDGVDICDYNLKD-L-RNLFSIVSQEPMLFN-MSIYENIKFGKE---DAT----REDVKRACKFAAIDE 1339 (1466)
T ss_pred cccCCCCCeEEECCEEHHhCCHHH-H-HhhccEeCCCCcccc-ccHHHHHhcCCC---CCC----HHHHHHHHHHcCCHH
Confidence 6999999999987754333 2 336999999999997 699999998631 122 345778888888877
Q ss_pred cccCCC-----------CCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCCC
Q 016804 219 VEDRLP-----------SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHK-KGENG 286 (382)
Q Consensus 219 ~~~~~~-----------~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~-~g~~~ 286 (382)
+....| ..||||||||++|||||++ +|+|||||||||+||+.+++.+++.|.++.. ++
T Consensus 1340 fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr-------~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~--- 1409 (1466)
T PTZ00265 1340 FIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLR-------EPKILLLDEATSSLDSNSEKLIEKTIVDIKDKAD--- 1409 (1466)
T ss_pred HHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhc-------CCCEEEEeCcccccCHHHHHHHHHHHHHHhccCC---
Confidence 766654 5799999999999999997 5999999999999999999999999999863 34
Q ss_pred CCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccCCCCcccccccEEEEEeC----CeEE-EEecccccc
Q 016804 287 LANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYE----GKIV-WQGMTHEFT 361 (382)
Q Consensus 287 ~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~----G~i~-~~g~~~~~~ 361 (382)
+|+|+|||+++.+.. ||+| ++|++ |+++ ++|+.+|+.
T Consensus 1410 -------~TvIiIaHRlsti~~-aD~I------------------------------vvl~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265 1410 -------KTIITIAHRIASIKR-SDKI------------------------------VVFNNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred -------CEEEEEechHHHHHh-CCEE------------------------------EEEeCCCCCCCEEEEecCHHHHH
Confidence 599999999999875 6766 99999 9955 899766666
Q ss_pred cCCCHHHHHHH
Q 016804 362 SSSNPIVQQFA 372 (382)
Q Consensus 362 ~~~~~~~~~~~ 372 (382)
...++...+++
T Consensus 1452 ~~~~g~Y~~l~ 1462 (1466)
T PTZ00265 1452 SVQDGVYKKYV 1462 (1466)
T ss_pred hcCCChHHHHH
Confidence 53344444444
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-46 Score=334.05 Aligned_cols=163 Identities=36% Similarity=0.627 Sum_probs=146.3
Q ss_pred EEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 92 IDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 92 I~~~nvs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
|+++|++++|++ +.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ... .+.++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~-~~~~i 78 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWD-PNE-LGDHV 78 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCC-HHH-HHhhe
Confidence 478999999975 56999999999999999999999999999999999999999999999999875432 222 23369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
+|+||++.+|+ .|++||+ ||||||||++|||||+.
T Consensus 79 ~~~~q~~~~~~-~tv~~~l--------------------------------------LS~G~~qrv~la~al~~------ 113 (173)
T cd03246 79 GYLPQDDELFS-GSIAENI--------------------------------------LSGGQRQRLGLARALYG------ 113 (173)
T ss_pred EEECCCCcccc-CcHHHHC--------------------------------------cCHHHHHHHHHHHHHhc------
Confidence 99999999888 4999997 99999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|++|||||||++||+.++..+.+.|+++++++ .|+|++|||++++. +|||+
T Consensus 114 -~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tii~~sh~~~~~~-~~d~v 165 (173)
T cd03246 114 -NPRILVLDEPNSHLDVEGERALNQAIAALKAAG----------ATRIVIAHRPETLA-SADRI 165 (173)
T ss_pred -CCCEEEEECCccccCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHH-hCCEE
Confidence 699999999999999999999999999997765 59999999999884 78877
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-46 Score=407.06 Aligned_cols=255 Identities=32% Similarity=0.462 Sum_probs=206.7
Q ss_pred hhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCcceEEEEeEEEEeCCe---eeeEeeeEE
Q 016804 37 FYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRNVYKSFGEK---HILRGVSFK 113 (382)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvs~~yg~~---~iL~~vsl~ 113 (382)
-+.+++.+-.++..+...++.-.+.+... ...+.-.++ |+++||+|+|+.+ ++|+|+||+
T Consensus 950 d~~ka~~Aa~~iF~i~dr~~~i~~~~~~~---------------~~~~~~~G~--I~~~~V~F~YPsRP~~~Il~~l~l~ 1012 (1228)
T KOG0055|consen 950 DISKAKIAAGSIFEILDRKPTIDPDSTSG---------------GKLPNVKGD--IEFRNVSFAYPTRPDVPVLNNLSLS 1012 (1228)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCCCC---------------CccccceeE--EEEeeeEeeCCCCCCchhhcCCcEE
Confidence 45677777888888888876333222000 000122334 9999999999754 599999999
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhHh
Q 016804 114 IRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLY 193 (382)
Q Consensus 114 i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~ 193 (382)
|++|+.+||||||||||||++.+|-++|+|++|.|.+||+|+.++... ++ |.+||.|.|+|.||. -|++|||.|+.
T Consensus 1013 i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~-~L-R~~i~lVsQEP~LF~-~TIrENI~YG~- 1088 (1228)
T KOG0055|consen 1013 IRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLK-WL-RKQIGLVSQEPVLFN-GTIRENIAYGS- 1088 (1228)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHH-HH-HHhcceeccCchhhc-ccHHHHHhccC-
Confidence 999999999999999999999999999999999999999999876433 33 347999999999997 59999999972
Q ss_pred hcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCC
Q 016804 194 ENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA 262 (382)
Q Consensus 194 ~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPta 262 (382)
...+ ++++.++++..+.+++....| .+||||||||+|||||+++ +|+||||||.||
T Consensus 1089 --~~vs----~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilR-------nPkILLLDEATS 1155 (1228)
T KOG0055|consen 1089 --EEVS----EEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILR-------NPKILLLDEATS 1155 (1228)
T ss_pred --CCCC----HHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHc-------CCCeeeeeccch
Confidence 1133 344677888888777766665 6999999999999999998 599999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccCCCCcccccccE
Q 016804 263 GLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYR 342 (382)
Q Consensus 263 gLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (382)
+||.++++.+++.|++... | +|.|+|+|+++++++ ||.|
T Consensus 1156 ALDseSErvVQeALd~a~~-g----------RT~IvIAHRLSTIqn-aD~I----------------------------- 1194 (1228)
T KOG0055|consen 1156 ALDSESERVVQEALDRAME-G----------RTTIVIAHRLSTIQN-ADVI----------------------------- 1194 (1228)
T ss_pred hhhhhhHHHHHHHHHHhhc-C----------CcEEEEecchhhhhc-CCEE-----------------------------
Confidence 9999999999999999865 3 499999999999987 5655
Q ss_pred EEEEeCCeEEEEecccccccCCCHH
Q 016804 343 LIFLYEGKIVWQGMTHEFTSSSNPI 367 (382)
Q Consensus 343 ii~l~~G~i~~~g~~~~~~~~~~~~ 367 (382)
+|+++|+|+|+|+.+++..+...+
T Consensus 1195 -~Vi~~G~VvE~GtH~~L~~~~G~Y 1218 (1228)
T KOG0055|consen 1195 -AVLKNGKVVEQGTHDELLAKRGIY 1218 (1228)
T ss_pred -EEEECCEEEecccHHHHHhCCCch
Confidence 999999999999666676644333
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=365.94 Aligned_cols=240 Identities=28% Similarity=0.460 Sum_probs=215.3
Q ss_pred cceEEEEeEEEEeC----CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEECCCCC
Q 016804 89 DVLIDCRNVYKSFG----EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLI 159 (382)
Q Consensus 89 ~~~I~~~nvs~~yg----~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p-----~sG~I~i~G~~i~~~~ 159 (382)
.++|+++|+++.|. ...++++|||+|.+||.+||||.||||||-..+.|+||++- -+|+|.|+|+++-...
T Consensus 4 ~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~s 83 (534)
T COG4172 4 MPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAAS 83 (534)
T ss_pred CcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCC
Confidence 46799999999996 57899999999999999999999999999999999999975 3799999999987653
Q ss_pred Chhh--hccceEEEEecCC--CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc---ccccCCCCCCChHHH
Q 016804 160 SDEE--ISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK---GVEDRLPSELSGGMK 232 (382)
Q Consensus 160 ~~~~--~~~~~Ig~V~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~---~~~~~~~~~LSGGqr 232 (382)
.... .+..+|+++||+| .|.|-.|+...+...+..+++++.++.++++.++|+.+|+. ..++.||++||||||
T Consensus 84 e~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqR 163 (534)
T COG4172 84 ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQR 163 (534)
T ss_pred HHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchh
Confidence 3221 2233699999998 58888899999999888888899999999999999999995 467899999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhch
Q 016804 233 KRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDR 312 (382)
Q Consensus 233 QRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDr 312 (382)
|||.||+||++ +|++||.||||++||...+.+++++|++|.++-+ +++++||||+..+.++|||
T Consensus 164 QRVMIAMALan-------~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~g---------Ma~lfITHDL~iVr~~ADr 227 (534)
T COG4172 164 QRVMIAMALAN-------EPDLLIADEPTTALDVTVQAQILDLLKELQAELG---------MAILFITHDLGIVRKFADR 227 (534)
T ss_pred hHHHHHHHHcC-------CCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhC---------cEEEEEeccHHHHHHhhhh
Confidence 99999999996 6999999999999999999999999999988732 7999999999999999999
Q ss_pred hccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 313 LCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 313 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
| .||.+|+++++|.+++++ .+.|||++.++..
T Consensus 228 V------------------------------~VM~~G~ivE~~~t~~lF~~PqHpYTr~Ll~a 260 (534)
T COG4172 228 V------------------------------YVMQHGEIVETGTTETLFAAPQHPYTRKLLAA 260 (534)
T ss_pred E------------------------------EEEeccEEeecCcHHHHhhCCCChHHHHHHhc
Confidence 9 888899999999998865 6899999998874
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-45 Score=350.83 Aligned_cols=220 Identities=23% Similarity=0.368 Sum_probs=189.1
Q ss_pred eEEEEeEEEEeCC--------------------eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEE
Q 016804 91 LIDCRNVYKSFGE--------------------KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150 (382)
Q Consensus 91 ~I~~~nvs~~yg~--------------------~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i 150 (382)
.|+++||+|.|.. +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 3788888888732 34899999999999999999999999999999999999999999999
Q ss_pred CCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChH
Q 016804 151 RGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGG 230 (382)
Q Consensus 151 ~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGG 230 (382)
+|. +++++|++.+++.+|+.+|+.+.... .+...++..+.+.++++.+++.+..++++.+||||
T Consensus 84 ~g~---------------~~~~~~~~~~~~~~tv~enl~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G 147 (264)
T PRK13546 84 NGE---------------VSVIAISAGLSGQLTGIENIEFKMLC-MGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSG 147 (264)
T ss_pred CCE---------------EeEEecccCCCCCCcHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHH
Confidence 984 35678887777889999999875432 23444555666778899999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhh
Q 016804 231 MKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAV 310 (382)
Q Consensus 231 qrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~a 310 (382)
|||||+|||||+. +|++|||||||+|||+.++..+.+.|.++++++ .|+|++||+++++..+|
T Consensus 148 q~qrv~Laral~~-------~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g----------~tiIiisH~~~~i~~~~ 210 (264)
T PRK13546 148 MRAKLGFSINITV-------NPDILVIDEALSVGDQTFAQKCLDKIYEFKEQN----------KTIFFVSHNLGQVRQFC 210 (264)
T ss_pred HHHHHHHHHHHhh-------CCCEEEEeCccccCCHHHHHHHHHHHHHHHHCC----------CEEEEEcCCHHHHHHHc
Confidence 9999999999997 599999999999999999999999999997665 59999999999999999
Q ss_pred chhccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHHc
Q 016804 311 DRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFAS 373 (382)
Q Consensus 311 Drv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 373 (382)
|++ ++|++|++++.|+.+++..........|..
T Consensus 211 d~i------------------------------~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 243 (264)
T PRK13546 211 TKI------------------------------AWIEGGKLKDYGELDDVLPKYEAFLNDFKK 243 (264)
T ss_pred CEE------------------------------EEEECCEEEEeCCHHHHHHHhHHHHHHHHh
Confidence 988 999999999999888776554455555554
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-46 Score=334.65 Aligned_cols=176 Identities=36% Similarity=0.654 Sum_probs=156.6
Q ss_pred EEEEeEEEEeCCe--eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 92 IDCRNVYKSFGEK--HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 92 I~~~nvs~~yg~~--~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ... .+.++
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~--~~~-~~~~i 77 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL--EKA-LSSLI 77 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH--HHH-HHhhE
Confidence 4789999999764 799999999999999999999999999999999999999999999999976432 111 23369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
+|+||++.+|+ .|++||+ +.+||||||||++|||||+.
T Consensus 78 ~~~~q~~~~~~-~tv~~~i-----------------------------------~~~LS~G~~qrv~laral~~------ 115 (178)
T cd03247 78 SVLNQRPYLFD-TTLRNNL-----------------------------------GRRFSGGERQRLALARILLQ------ 115 (178)
T ss_pred EEEccCCeeec-ccHHHhh-----------------------------------cccCCHHHHHHHHHHHHHhc------
Confidence 99999999886 6999987 78999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
+|++|||||||++||+.+++.+.+.|+++. ++ .|+|++||+++++. .|||+
T Consensus 116 -~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~----------~tii~~sh~~~~~~-~~d~~---------------- 166 (178)
T cd03247 116 -DAPIVLLDEPTVGLDPITERQLLSLIFEVL-KD----------KTLIWITHHLTGIE-HMDKI---------------- 166 (178)
T ss_pred -CCCEEEEECCcccCCHHHHHHHHHHHHHHc-CC----------CEEEEEecCHHHHH-hCCEE----------------
Confidence 699999999999999999999999999985 34 59999999999986 58877
Q ss_pred cCCCCcccccccEEEEEeCCeEEEEe
Q 016804 330 AVAPDKEVFFIYRLIFLYEGKIVWQG 355 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l~~G~i~~~g 355 (382)
++|++|++++.|
T Consensus 167 --------------~~l~~g~i~~~~ 178 (178)
T cd03247 167 --------------LFLENGKIIMQG 178 (178)
T ss_pred --------------EEEECCEEEecC
Confidence 999999998754
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-45 Score=383.31 Aligned_cols=221 Identities=20% Similarity=0.366 Sum_probs=187.6
Q ss_pred CcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccc
Q 016804 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (382)
Q Consensus 88 ~~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~ 167 (382)
+.++|+++|+++ .+|+++||+|++||++||+||||||||||+|+|+|+.+|++|+|+++|+++.... .....+.
T Consensus 265 ~~~~l~~~~l~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~-~~~~~~~ 338 (510)
T PRK15439 265 GAPVLTVEDLTG-----EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALS-TAQRLAR 338 (510)
T ss_pred CCceEEEeCCCC-----CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCC-HHHHHhC
Confidence 456899999994 2699999999999999999999999999999999999999999999999875432 2222234
Q ss_pred eEEEEecCC---CCCCCCCHHHHHHhhHhh-cC-CCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHHHHHH
Q 016804 168 RIGLVFQSA---ALFDSLTVRENVGFLLYE-NS-KMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSI 241 (382)
Q Consensus 168 ~Ig~V~Q~~---~l~~~lTV~eni~~~~~~-~~-~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaIArAL 241 (382)
+|+|+||++ .+|+.+|+.+|+...... .. .......++.+.++++.+|+. +..++++.+|||||||||+|||||
T Consensus 339 ~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al 418 (510)
T PRK15439 339 GLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCL 418 (510)
T ss_pred CcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHH
Confidence 699999985 488889999999643111 00 011223345678999999997 788999999999999999999999
Q ss_pred hcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccccc
Q 016804 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGH 321 (382)
Q Consensus 242 ~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~ 321 (382)
+. +|+||||||||+|||+.++..+.++|++++++| .|||+||||++++.++|||+
T Consensus 419 ~~-------~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g----------~tiIivsHd~~~i~~~~d~i-------- 473 (510)
T PRK15439 419 EA-------SPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQN----------VAVLFISSDLEEIEQMADRV-------- 473 (510)
T ss_pred hh-------CCCEEEECCCCcCcChhHHHHHHHHHHHHHhCC----------CEEEEECCCHHHHHHhCCEE--------
Confidence 97 699999999999999999999999999998776 59999999999999999988
Q ss_pred chheehhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 322 IDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.|+++++.
T Consensus 474 ----------------------~~l~~G~i~~~~~~~~~~ 491 (510)
T PRK15439 474 ----------------------LVMHQGEISGALTGAAIN 491 (510)
T ss_pred ----------------------EEEECCEEEEEEccccCC
Confidence 999999999999887765
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-45 Score=423.51 Aligned_cols=221 Identities=24% Similarity=0.391 Sum_probs=197.7
Q ss_pred cceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhcc
Q 016804 89 DVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~ 166 (382)
+.+|+++||+|+|++ +.+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++... ... .+
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~--~~~-~r 2011 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTN--ISD-VH 2011 (2272)
T ss_pred CceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcch--HHH-Hh
Confidence 457999999999985 5799999999999999999999999999999999999999999999999987431 111 23
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCC
Q 016804 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT 246 (382)
Q Consensus 167 ~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~ 246 (382)
.+|||+||++.+++.+|++||+.+.... .+.+.++.++.++++++.+||.+..++++++|||||||||+||+||+.
T Consensus 2012 ~~IGy~pQ~~~L~~~LTv~E~L~l~a~l-~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~--- 2087 (2272)
T TIGR01257 2012 QNMGYCPQFDAIDDLLTGREHLYLYARL-RGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIG--- 2087 (2272)
T ss_pred hhEEEEeccccCCCCCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhc---
Confidence 3699999999999999999999886533 334555566778899999999999999999999999999999999997
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchhee
Q 016804 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVI 326 (382)
Q Consensus 247 ~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~ 326 (382)
+|+||||||||+||||.+++.++++|++++++| +|||++||+++++..+|||+
T Consensus 2088 ----~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g----------~TIILtTH~mee~e~lcDrV------------- 2140 (2272)
T TIGR01257 2088 ----CPPLVLLDEPTTGMDPQARRMLWNTIVSIIREG----------RAVVLTSHSMEECEALCTRL------------- 2140 (2272)
T ss_pred ----CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHhCCEE-------------
Confidence 699999999999999999999999999998776 59999999999999999988
Q ss_pred hhccCCCCcccccccEEEEEeCCeEEEEeccccc
Q 016804 327 ILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEF 360 (382)
Q Consensus 327 ~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~ 360 (382)
++|++|+++..|++.++
T Consensus 2141 -----------------~IL~~G~i~~~Gs~q~L 2157 (2272)
T TIGR01257 2141 -----------------AIMVKGAFQCLGTIQHL 2157 (2272)
T ss_pred -----------------EEEECCEEEEECCHHHH
Confidence 99999999999988765
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-45 Score=421.08 Aligned_cols=219 Identities=26% Similarity=0.423 Sum_probs=187.2
Q ss_pred eEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 91 LIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 91 ~I~~~nvs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
.|+++||+++|.+ .++|+|+||+|++||.+||||+||||||||+++|.|+++|++|+|+|||.|+..... .+. |.+
T Consensus 1237 ~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l-~~L-R~~ 1314 (1622)
T PLN03130 1237 SIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGL-MDL-RKV 1314 (1622)
T ss_pred cEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCH-HHH-Hhc
Confidence 4999999999964 369999999999999999999999999999999999999999999999999887533 333 337
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChHHHHHHHH
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVAL 237 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGGqrQRVaI 237 (382)
|++|||+|.||+. |++|||.++. ..+ ++++.++++++++.++.++.| ..||||||||++|
T Consensus 1315 IsiVpQdp~LF~G-TIreNLd~~~----~~t----deei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaL 1385 (1622)
T PLN03130 1315 LGIIPQAPVLFSG-TVRFNLDPFN----EHN----DADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSL 1385 (1622)
T ss_pred cEEECCCCccccc-cHHHHhCcCC----CCC----HHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHH
Confidence 9999999999985 9999997531 122 345778889888877666655 5899999999999
Q ss_pred HHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccc
Q 016804 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQ 317 (382)
Q Consensus 238 ArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~ 317 (382)
||||++ +|+|||||||||+||..+.+.+++.|++..+. +|+|+|+|+++++.. ||||
T Consensus 1386 ARALLr-------~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~-----------~TvI~IAHRL~tI~~-~DrI---- 1442 (1622)
T PLN03130 1386 ARALLR-------RSKILVLDEATAAVDVRTDALIQKTIREEFKS-----------CTMLIIAHRLNTIID-CDRI---- 1442 (1622)
T ss_pred HHHHHc-------CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCC-----------CEEEEEeCChHHHHh-CCEE----
Confidence 999998 59999999999999999999999999988543 599999999999987 6766
Q ss_pred ccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHH
Q 016804 318 IFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQ 369 (382)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~ 369 (382)
+||++|+|++.|+++++....+....
T Consensus 1443 --------------------------lVLd~G~IvE~Gt~~eLl~~~~g~f~ 1468 (1622)
T PLN03130 1443 --------------------------LVLDAGRVVEFDTPENLLSNEGSAFS 1468 (1622)
T ss_pred --------------------------EEEECCEEEEeCCHHHHHhCCCCHHH
Confidence 99999999999998888754333333
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-46 Score=356.66 Aligned_cols=213 Identities=31% Similarity=0.499 Sum_probs=183.0
Q ss_pred eEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChh--hhccceEEEEe
Q 016804 96 NVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE--EISGLRIGLVF 173 (382)
Q Consensus 96 nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~--~~~~~~Ig~V~ 173 (382)
|+.+++|+. -=+++|+.+.-.++||.|+||||||||+|+|+||.+|++|.|.+||+-+.+..... ...+++|||||
T Consensus 5 ~~~~~lG~~--~l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVF 82 (352)
T COG4148 5 NFRQRLGNF--ALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVF 82 (352)
T ss_pred ehhhhcCce--EEEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEe
Confidence 344555543 23789999887899999999999999999999999999999999998765432211 12345799999
Q ss_pred cCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCc
Q 016804 174 QSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPE 253 (382)
Q Consensus 174 Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~ 253 (382)
|+..|||++||+.|+.|+... .. .....++.+.+|++++++|+|.+|||||||||||+|||+. .|+
T Consensus 83 QDARLFpH~tVrgNL~YG~~~---~~----~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt-------~P~ 148 (352)
T COG4148 83 QDARLFPHYTVRGNLRYGMWK---SM----RAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLT-------APE 148 (352)
T ss_pred eccccccceEEecchhhhhcc---cc----hHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhc-------CCC
Confidence 999999999999999998642 11 2335678899999999999999999999999999999997 599
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccCCC
Q 016804 254 VLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAP 333 (382)
Q Consensus 254 iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~ 333 (382)
+||||||.|+||..-+.+++-.|++|+++-+ +-|++|||.++++.++||||
T Consensus 149 LLLmDEPLaSLD~~RK~EilpylERL~~e~~---------IPIlYVSHS~~Ev~RLAd~v-------------------- 199 (352)
T COG4148 149 LLLMDEPLASLDLPRKREILPYLERLRDEIN---------IPILYVSHSLDEVLRLADRV-------------------- 199 (352)
T ss_pred eeeecCchhhcccchhhHHHHHHHHHHHhcC---------CCEEEEecCHHHHHhhhheE--------------------
Confidence 9999999999999999999999999998743 68999999999999999988
Q ss_pred CcccccccEEEEEeCCeEEEEecccccccC
Q 016804 334 DKEVFFIYRLIFLYEGKIVWQGMTHEFTSS 363 (382)
Q Consensus 334 ~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~ 363 (382)
++|++||+.+.|..++++..
T Consensus 200 ----------V~le~GkV~A~g~~e~v~~~ 219 (352)
T COG4148 200 ----------VVLENGKVKASGPLEEVWGS 219 (352)
T ss_pred ----------EEecCCeEEecCcHHHHhcC
Confidence 99999999999988887643
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-45 Score=421.31 Aligned_cols=222 Identities=24% Similarity=0.392 Sum_probs=196.7
Q ss_pred CCcceEEEEeEEEEeC--CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhh
Q 016804 87 DGDVLIDCRNVYKSFG--EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEI 164 (382)
Q Consensus 87 ~~~~~I~~~nvs~~yg--~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~ 164 (382)
...+.|+++||+|+|+ ++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.. ....
T Consensus 924 ~~~~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~--~~~~- 1000 (2272)
T TIGR01257 924 GLVPGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET--NLDA- 1000 (2272)
T ss_pred CCCceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc--hHHH-
Confidence 3446899999999995 5789999999999999999999999999999999999999999999999998753 1111
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcC
Q 016804 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFD 244 (382)
Q Consensus 165 ~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~ 244 (382)
.+..+||+||++.+|+.+||+||+.+.... .+...++.++++.++++.+||.+..++++.+|||||||||+|||||+.
T Consensus 1001 ~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~l-kg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~- 1078 (2272)
T TIGR01257 1001 VRQSLGMCPQHNILFHHLTVAEHILFYAQL-KGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVG- 1078 (2272)
T ss_pred HhhcEEEEecCCcCCCCCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHc-
Confidence 234699999999999999999999987543 334445566778999999999999999999999999999999999997
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchh
Q 016804 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDV 324 (382)
Q Consensus 245 ~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~ 324 (382)
+|+||||||||+|||+.+++.++++|++++ +| +|||++||+++++..+|||+
T Consensus 1079 ------~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g----------~TIIltTHdmdea~~laDrI----------- 1130 (2272)
T TIGR01257 1079 ------DAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SG----------RTIIMSTHHMDEADLLGDRI----------- 1130 (2272)
T ss_pred ------CCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CC----------CEEEEEECCHHHHHHhCCEE-----------
Confidence 699999999999999999999999999995 45 59999999999999999988
Q ss_pred eehhccCCCCcccccccEEEEEeCCeEEEEeccccc
Q 016804 325 VIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEF 360 (382)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~ 360 (382)
++|++|+++..|++.++
T Consensus 1131 -------------------~iL~~GkL~~~Gs~~~L 1147 (2272)
T TIGR01257 1131 -------------------AIISQGRLYCSGTPLFL 1147 (2272)
T ss_pred -------------------EEEECCEEEEecCHHHH
Confidence 99999999999977654
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-45 Score=379.14 Aligned_cols=222 Identities=22% Similarity=0.357 Sum_probs=185.7
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
+++|+++||+++| +++|+++||+|++||++||+||||||||||+|+|+|+.+|++|+|+++|+++... +.....+..
T Consensus 248 ~~~i~~~~l~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~-~~~~~~~~~ 324 (491)
T PRK10982 248 EVILEVRNLTSLR--QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNH-NANEAINHG 324 (491)
T ss_pred CcEEEEeCccccc--CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCC-CHHHHHHCC
Confidence 4689999999985 4699999999999999999999999999999999999999999999999987543 222222335
Q ss_pred EEEEecCC---CCCCCCCHHHHHHhhH-h---hcCC-CCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHHHH
Q 016804 169 IGLVFQSA---ALFDSLTVRENVGFLL-Y---ENSK-MRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALAR 239 (382)
Q Consensus 169 Ig~V~Q~~---~l~~~lTV~eni~~~~-~---~~~~-~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaIAr 239 (382)
++|+||++ .+|+.+|+.+|..+.. . ...+ ......++.+.++++.+++. +..++++.+|||||||||+|||
T Consensus 325 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~ 404 (491)
T PRK10982 325 FALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGR 404 (491)
T ss_pred CEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHH
Confidence 99999985 4788888887743221 0 0011 12334456678899999995 5679999999999999999999
Q ss_pred HHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccc
Q 016804 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIF 319 (382)
Q Consensus 240 AL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~ 319 (382)
||+. +|+||||||||+|||+.++..++++|+++.+++ .|||++|||++++.++|||+
T Consensus 405 al~~-------~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~----------~tvi~vsHd~~~~~~~~d~v------ 461 (491)
T PRK10982 405 WLLT-------QPEILMLDEPTRGIDVGAKFEIYQLIAELAKKD----------KGIIIISSEMPELLGITDRI------ 461 (491)
T ss_pred HHhc-------CCCEEEEcCCCcccChhHHHHHHHHHHHHHHCC----------CEEEEECCChHHHHhhCCEE------
Confidence 9997 699999999999999999999999999998776 59999999999999999988
Q ss_pred ccchheehhccCCCCcccccccEEEEEeCCeEEEEeccccc
Q 016804 320 GHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEF 360 (382)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~ 360 (382)
++|++|+++..++++++
T Consensus 462 ------------------------~~l~~g~i~~~~~~~~~ 478 (491)
T PRK10982 462 ------------------------LVMSNGLVAGIVDTKTT 478 (491)
T ss_pred ------------------------EEEECCEEEEEEccccC
Confidence 99999999988866544
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-45 Score=420.25 Aligned_cols=215 Identities=27% Similarity=0.426 Sum_probs=184.8
Q ss_pred eEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 91 LIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 91 ~I~~~nvs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
.|+++||+++|++ +++|+|+||+|++||.+|||||||||||||+++|.|+++|++|+|.+||.|+....... . +.+
T Consensus 1234 ~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~-l-R~~ 1311 (1495)
T PLN03232 1234 SIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTD-L-RRV 1311 (1495)
T ss_pred cEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHH-H-Hhh
Confidence 4999999999953 47999999999999999999999999999999999999999999999999987653333 2 336
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChHHHHHHHH
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVAL 237 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGGqrQRVaI 237 (382)
|+||||+|.+|+. |++|||.++. ..+ ++++.++++.+++.++.++.| ..||||||||++|
T Consensus 1312 i~iVpQdp~LF~g-TIr~NL~~~~----~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaL 1382 (1495)
T PLN03232 1312 LSIIPQSPVLFSG-TVRFNIDPFS----EHN----DADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSL 1382 (1495)
T ss_pred cEEECCCCeeeCc-cHHHHcCCCC----CCC----HHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHH
Confidence 9999999999985 9999997531 122 344677888888877665554 5899999999999
Q ss_pred HHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccc
Q 016804 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQ 317 (382)
Q Consensus 238 ArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~ 317 (382)
||||++ +|+|||||||||+||+++.+.+++.|++..++ +|+|+|||+++++.+ ||||
T Consensus 1383 ARALLr-------~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~-----------~TvI~IAHRl~ti~~-~DrI---- 1439 (1495)
T PLN03232 1383 ARALLR-------RSKILVLDEATASVDVRTDSLIQRTIREEFKS-----------CTMLVIAHRLNTIID-CDKI---- 1439 (1495)
T ss_pred HHHHHh-------CCCEEEEECCcccCCHHHHHHHHHHHHHHcCC-----------CEEEEEeCCHHHHHh-CCEE----
Confidence 999997 59999999999999999999999999987543 599999999999987 6666
Q ss_pred ccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCC
Q 016804 318 IFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSN 365 (382)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~ 365 (382)
+||++|+|++.|+++|+....+
T Consensus 1440 --------------------------lVL~~G~ivE~Gt~~eLl~~~~ 1461 (1495)
T PLN03232 1440 --------------------------LVLSSGQVLEYDSPQELLSRDT 1461 (1495)
T ss_pred --------------------------EEEECCEEEEECCHHHHHhCCC
Confidence 9999999999998888775443
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-45 Score=337.91 Aligned_cols=180 Identities=26% Similarity=0.414 Sum_probs=152.0
Q ss_pred EEEEeEEEEeCCe-----eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhcc
Q 016804 92 IDCRNVYKSFGEK-----HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (382)
Q Consensus 92 I~~~nvs~~yg~~-----~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~ 166 (382)
|+++||+++|+++ ++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------- 66 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------- 66 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC--------------
Confidence 4789999999764 699999999999999999999999999999999999999999999998
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcC-----------CcccccCCCCCCChHHHHHH
Q 016804 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVG-----------LKGVEDRLPSELSGGMKKRV 235 (382)
Q Consensus 167 ~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~g-----------L~~~~~~~~~~LSGGqrQRV 235 (382)
+|+|+||++.+|+ .|++||+.+... ...+. ..++++.++ +....++.+.+||+|||||+
T Consensus 67 -~i~~~~q~~~l~~-~t~~enl~~~~~----~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv 136 (204)
T cd03250 67 -SIAYVSQEPWIQN-GTIRENILFGKP----FDEER----YEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRI 136 (204)
T ss_pred -EEEEEecCchhcc-CcHHHHhccCCC----cCHHH----HHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHH
Confidence 4899999999985 699999987532 12211 223333333 33445667899999999999
Q ss_pred HHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 236 ALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVED-LIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 236 aIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~-lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|||||+. +|+++||||||++||+.+++.+.+ +++++.+++ .|+|++||+++.+.. ||++
T Consensus 137 ~laral~~-------~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~----------~tvi~~sh~~~~~~~-~d~i 197 (204)
T cd03250 137 SLARAVYS-------DADIYLLDDPLSAVDAHVGRHIFENCILGLLLNN----------KTRILVTHQLQLLPH-ADQI 197 (204)
T ss_pred HHHHHHhc-------CCCEEEEeCccccCCHHHHHHHHHHHHHHhccCC----------CEEEEEeCCHHHHhh-CCEE
Confidence 99999997 699999999999999999999988 567665555 599999999999987 8877
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-45 Score=378.37 Aligned_cols=221 Identities=26% Similarity=0.393 Sum_probs=181.2
Q ss_pred CcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-CccEEEECCEECCCCCChhhhcc
Q 016804 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-DKGEVYIRGRKRAGLISDEEISG 166 (382)
Q Consensus 88 ~~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p-~sG~I~i~G~~i~~~~~~~~~~~ 166 (382)
..++|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+|+|+|+.+| ++|+|+++|+++........ .+
T Consensus 257 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~-~~ 335 (490)
T PRK10938 257 NEPRIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWD-IK 335 (490)
T ss_pred CCceEEEeceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHH-HH
Confidence 35689999999999988899999999999999999999999999999999999876 79999999986532111111 22
Q ss_pred ceEEEEecCCCCCC--CCCHHHHHHhhHhhc---CCCCHHHHHHHHHHHHHHcCCcc-cccCCCCCCChHHHHHHHHHHH
Q 016804 167 LRIGLVFQSAALFD--SLTVRENVGFLLYEN---SKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALARS 240 (382)
Q Consensus 167 ~~Ig~V~Q~~~l~~--~lTV~eni~~~~~~~---~~~~~~~~~~~v~~~L~~~gL~~-~~~~~~~~LSGGqrQRVaIArA 240 (382)
.+|||++|++.++. ..++.+++.++.... ......+.+++++++++.++|.+ ..++++.+|||||||||+||||
T Consensus 336 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~a 415 (490)
T PRK10938 336 KHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRA 415 (490)
T ss_pred hhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHH
Confidence 36999999986643 246777765432110 01112233566889999999987 8899999999999999999999
Q ss_pred HhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHH-hhchhcccccc
Q 016804 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRR-AVDRLCLFQIF 319 (382)
Q Consensus 241 L~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~-~aDrv~~~~~~ 319 (382)
|+. +|++|||||||+|||+.++..+.++|+++++++. .|||++|||++++.+ +|||+
T Consensus 416 l~~-------~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~---------~tviivsHd~~~~~~~~~d~v------ 473 (490)
T PRK10938 416 LVK-------HPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGE---------TQLLFVSHHAEDAPACITHRL------ 473 (490)
T ss_pred Hhc-------CCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCC---------cEEEEEecchhhhhhhhheeE------
Confidence 997 6999999999999999999999999999987652 479999999999987 58877
Q ss_pred ccchheehhccCCCCcccccccEEEEEeCCeEEEEe
Q 016804 320 GHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQG 355 (382)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g 355 (382)
++|++|+|++.-
T Consensus 474 ------------------------~~l~~G~i~~~~ 485 (490)
T PRK10938 474 ------------------------EFVPDGDIYRYV 485 (490)
T ss_pred ------------------------EEecCCceEEee
Confidence 999999998765
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-45 Score=381.46 Aligned_cols=208 Identities=29% Similarity=0.456 Sum_probs=179.0
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
||+++||+|+|+++++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|. .+||
T Consensus 1 ml~i~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------~~i~ 67 (530)
T PRK15064 1 MLSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-------------ERLG 67 (530)
T ss_pred CEEEEEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-------------CEEE
Confidence 589999999999889999999999999999999999999999999999999999999999872 1599
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhc----------CCC---------------------CHHHHHHHHHHHHHHcCCccc
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYEN----------SKM---------------------RDEQISELVKENLAAVGLKGV 219 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~----------~~~---------------------~~~~~~~~v~~~L~~~gL~~~ 219 (382)
|++|++.+++.+||+||+.++.... ... ...+.++++.++++.+|+.+.
T Consensus 68 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~ 147 (530)
T PRK15064 68 KLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEE 147 (530)
T ss_pred EEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChh
Confidence 9999999999999999998753100 000 001224567889999999764
Q ss_pred -ccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEE
Q 016804 220 -EDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVV 298 (382)
Q Consensus 220 -~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIi 298 (382)
.++++.+|||||||||+|||||+. +|++|||||||++||+.++..+.++|++ .+ .|||+
T Consensus 148 ~~~~~~~~LSgGq~qrv~lA~aL~~-------~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~----------~tiii 207 (530)
T PRK15064 148 QHYGLMSEVAPGWKLRVLLAQALFS-------NPDILLLDEPTNNLDINTIRWLEDVLNE---RN----------STMII 207 (530)
T ss_pred HhcCchhhcCHHHHHHHHHHHHHhc-------CCCEEEEcCCCcccCHHHHHHHHHHHHh---CC----------CeEEE
Confidence 357899999999999999999997 6999999999999999999999999863 34 49999
Q ss_pred EccCHHHHHHhhchhccccccccchheehhccCCCCcccccccEEEEEeCCeE-EEEecccccc
Q 016804 299 VTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKI-VWQGMTHEFT 361 (382)
Q Consensus 299 vTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i-~~~g~~~~~~ 361 (382)
||||++.+.++|||+ ++|++|++ ++.|+++++.
T Consensus 208 vsHd~~~~~~~~d~i------------------------------~~l~~g~i~~~~g~~~~~~ 241 (530)
T PRK15064 208 ISHDRHFLNSVCTHM------------------------------ADLDYGELRVYPGNYDEYM 241 (530)
T ss_pred EeCCHHHHHhhcceE------------------------------EEEeCCEEEEecCCHHHHH
Confidence 999999999999988 99999999 4788777664
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-45 Score=360.00 Aligned_cols=200 Identities=37% Similarity=0.606 Sum_probs=174.6
Q ss_pred EEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHH
Q 016804 122 IIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDE 201 (382)
Q Consensus 122 LiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~ 201 (382)
|+||||||||||+|+|+|+++|++|+|+++|+++.... . .+.+|+|+||++.+|+++||+||+.|++... +....
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~-~---~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~-~~~~~ 75 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVP-P---HLRHINMVFQSYALFPHMTVEENVAFGLKMR-KVPRA 75 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCC-H---HHCCEEEEecCccccCCCcHHHHHHHHHhhc-CCCHH
Confidence 68999999999999999999999999999999875432 1 1236999999999999999999999875322 33445
Q ss_pred HHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 016804 202 QISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHK 281 (382)
Q Consensus 202 ~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~ 281 (382)
+..+++.++++.++|.++.++++.+|||||||||+|||||+. +|++|||||||+|||+.++..+.+.|+++.+
T Consensus 76 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~-------~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~ 148 (325)
T TIGR01187 76 EIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVF-------KPKILLLDEPLSALDKKLRDQMQLELKTIQE 148 (325)
T ss_pred HHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHh-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence 556778899999999999999999999999999999999997 6999999999999999999999999999987
Q ss_pred c-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEeccccc
Q 016804 282 K-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEF 360 (382)
Q Consensus 282 ~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~ 360 (382)
+ + .|+|+||||++++.++|||+ ++|++|++++.|+++++
T Consensus 149 ~~g----------~tiiivTHd~~e~~~~~d~i------------------------------~vl~~G~i~~~g~~~~~ 188 (325)
T TIGR01187 149 QLG----------ITFVFVTHDQEEAMTMSDRI------------------------------AIMRKGKIAQIGTPEEI 188 (325)
T ss_pred hcC----------CEEEEEeCCHHHHHHhCCEE------------------------------EEEECCEEEEEcCHHHH
Confidence 5 4 59999999999999999988 99999999999998887
Q ss_pred cc-CCCHHHHHHHc
Q 016804 361 TS-SSNPIVQQFAS 373 (382)
Q Consensus 361 ~~-~~~~~~~~~~~ 373 (382)
.. +.+..+..|..
T Consensus 189 ~~~~~~~~~~~~~~ 202 (325)
T TIGR01187 189 YEEPANLFVARFIG 202 (325)
T ss_pred HhCCCcHHHHHhcC
Confidence 54 45567776665
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-44 Score=379.55 Aligned_cols=274 Identities=22% Similarity=0.297 Sum_probs=208.0
Q ss_pred cccchhhHhHhhHHhhhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCC
Q 016804 5 SSSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEP 84 (382)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (382)
+....+.|...+..++.++..+++.. .....+..+.+|+...+..+..+........ .. ..... +
T Consensus 266 t~g~l~a~~~~~~~l~~pi~~l~~~~-----~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~---~~-----~~~~~--~ 330 (555)
T TIGR01194 266 DAAAISAFVLALLYIKGPLEMLVSAL-----PILAQAQIACQRLADFGERFNEPEPELELSD---AD-----NVLLL--A 330 (555)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhhccccccccccc---cc-----ccccc--c
Confidence 33445556666667788888888777 7788889999999998754321100000000 00 00000 0
Q ss_pred CCCCcceEEEEeEEEEeCCe-----eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCC
Q 016804 85 EDDGDVLIDCRNVYKSFGEK-----HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLI 159 (382)
Q Consensus 85 ~~~~~~~I~~~nvs~~yg~~-----~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~ 159 (382)
+......|+++||+|+|+++ ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|.++....
T Consensus 331 ~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~ 410 (555)
T TIGR01194 331 HDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADS 410 (555)
T ss_pred cCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC
Confidence 00112349999999999752 5999999999999999999999999999999999999999999999999987643
Q ss_pred ChhhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC------CCCChHHHH
Q 016804 160 SDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP------SELSGGMKK 233 (382)
Q Consensus 160 ~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~------~~LSGGqrQ 233 (382)
.. +. +.+++||+|++.+|+. |+++|.. +...++++.++++.++++++.++.| ..|||||||
T Consensus 411 ~~-~~-~~~i~~v~q~~~lf~~-ti~~n~~----------~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~q 477 (555)
T TIGR01194 411 RD-DY-RDLFSAIFADFHLFDD-LIGPDEG----------EHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQK 477 (555)
T ss_pred HH-HH-HhhCcEEccChhhhhh-hhhcccc----------cchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHH
Confidence 22 22 2369999999999974 8988841 1123455778999999988776655 469999999
Q ss_pred HHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHH-HHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhch
Q 016804 234 RVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIR-SVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDR 312 (382)
Q Consensus 234 RVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~-~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDr 312 (382)
|++|||||++ +|++|||||||++||+.+++.+.+.+. .+..++ +|+|+|||+++.+. .||+
T Consensus 478 RlalaRall~-------~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~----------~tiiiisH~~~~~~-~~d~ 539 (555)
T TIGR01194 478 RLALICAWLE-------DRPILLFDEWAADQDPAFKRFFYEELLPDLKRQG----------KTIIIISHDDQYFE-LADQ 539 (555)
T ss_pred HHHHHHHHHc-------CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCC----------CEEEEEeccHHHHH-hCCE
Confidence 9999999997 599999999999999999999988654 455555 59999999998765 6776
Q ss_pred hccccccccchheehhccCCCCcccccccEEEEEeCCeEEEE
Q 016804 313 LCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQ 354 (382)
Q Consensus 313 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~ 354 (382)
| ++|++|++++.
T Consensus 540 i------------------------------~~l~~G~i~~~ 551 (555)
T TIGR01194 540 I------------------------------IKLAAGCIVKD 551 (555)
T ss_pred E------------------------------EEEECCEEEEe
Confidence 6 99999999865
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-45 Score=417.71 Aligned_cols=275 Identities=24% Similarity=0.309 Sum_probs=209.5
Q ss_pred HHhhhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCcceEEEEe
Q 016804 17 KSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRN 96 (382)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~n 96 (382)
..++.++..+.... ........+.+|+.+.+..|+....... .. .....-+..+ .|+++|
T Consensus 1230 ~~~~~~l~~l~~~~-----~~~e~~~~s~eRi~~~~~~~~e~~~~~~------~~-------~~~~~wp~~g--~I~f~n 1289 (1522)
T TIGR00957 1230 LQVTFYLNWLVRMS-----SEMETNIVAVERLKEYSETEKEAPWQIQ------ET-------APPSGWPPRG--RVEFRN 1289 (1522)
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhcCCCCcccccc------CC-------CCCCCCCCCC--cEEEEE
Confidence 33344444444443 4556667788899988877642210000 00 0000001122 399999
Q ss_pred EEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEec
Q 016804 97 VYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQ 174 (382)
Q Consensus 97 vs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q 174 (382)
|+++|++ .++|+||||+|++||.+||||+||||||||+++|.|+++|++|+|++||.|+...... +. |.+|++|||
T Consensus 1290 Vsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~-~L-R~~i~iVpQ 1367 (1522)
T TIGR00957 1290 YCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLH-DL-RFKITIIPQ 1367 (1522)
T ss_pred EEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHH-HH-HhcCeEECC
Confidence 9999964 4699999999999999999999999999999999999999999999999999875433 32 336999999
Q ss_pred CCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChHHHHHHHHHHHHhc
Q 016804 175 SAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVALARSIIF 243 (382)
Q Consensus 175 ~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGGqrQRVaIArAL~~ 243 (382)
+|.||++ |+++||... ...++ +++.++++.+++.++..+.| ..||||||||++|||||++
T Consensus 1368 dp~LF~g-TIr~NLdp~----~~~sd----eei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr 1438 (1522)
T TIGR00957 1368 DPVLFSG-SLRMNLDPF----SQYSD----EEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLR 1438 (1522)
T ss_pred CCcccCc-cHHHHcCcc----cCCCH----HHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHc
Confidence 9999985 999999631 11233 34677888888876554443 5799999999999999997
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccch
Q 016804 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHID 323 (382)
Q Consensus 244 ~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~ 323 (382)
+|+|||||||||+||+++...+++.|++..++ +|+|+|+|+++++.. ||||
T Consensus 1439 -------~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~-----------~TvI~IAHRl~ti~~-~DrI---------- 1489 (1522)
T TIGR00957 1439 -------KTKILVLDEATAAVDLETDNLIQSTIRTQFED-----------CTVLTIAHRLNTIMD-YTRV---------- 1489 (1522)
T ss_pred -------CCCEEEEECCcccCCHHHHHHHHHHHHHHcCC-----------CEEEEEecCHHHHHh-CCEE----------
Confidence 59999999999999999999999999987543 599999999999987 5655
Q ss_pred heehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHH
Q 016804 324 VVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFA 372 (382)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 372 (382)
+||++|+|++.|+++++... +....+++
T Consensus 1490 --------------------lVld~G~IvE~G~~~eLl~~-~~~f~~l~ 1517 (1522)
T TIGR00957 1490 --------------------IVLDKGEVAEFGAPSNLLQQ-RGIFYSMA 1517 (1522)
T ss_pred --------------------EEEECCEEEEECCHHHHHhC-CCHHHHHH
Confidence 99999999999988887754 34444443
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-45 Score=383.75 Aligned_cols=208 Identities=29% Similarity=0.427 Sum_probs=179.9
Q ss_pred ceEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 90 VLIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 90 ~~I~~~nvs~~yg-~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
+||+++||+++|+ ++++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.+++. .+
T Consensus 5 ~~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~-------------~~ 71 (556)
T PRK11819 5 YIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG-------------IK 71 (556)
T ss_pred EEEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-------------CE
Confidence 5899999999998 788999999999999999999999999999999999999999999999741 15
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhc-------------CCCCH----------------------HHHHHHHHHHHHH
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYEN-------------SKMRD----------------------EQISELVKENLAA 213 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~-------------~~~~~----------------------~~~~~~v~~~L~~ 213 (382)
||||||++.+++.+||.||+.++.... ..... .+..+++.++++.
T Consensus 72 i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 151 (556)
T PRK11819 72 VGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDA 151 (556)
T ss_pred EEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHh
Confidence 999999999999999999998753210 00000 0124567889999
Q ss_pred cCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCc
Q 016804 214 VGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNI 293 (382)
Q Consensus 214 ~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~ 293 (382)
+|+.. .++++.+|||||||||+|||||+. +|++|||||||++||+.++..+.+.|+++. +
T Consensus 152 ~gl~~-~~~~~~~LSgGqkqrv~la~al~~-------~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~--~---------- 211 (556)
T PRK11819 152 LRCPP-WDAKVTKLSGGERRRVALCRLLLE-------KPDMLLLDEPTNHLDAESVAWLEQFLHDYP--G---------- 211 (556)
T ss_pred CCCCc-ccCchhhcCHHHHHHHHHHHHHhC-------CCCEEEEcCCCCcCChHHHHHHHHHHHhCC--C----------
Confidence 99964 789999999999999999999997 699999999999999999999999998872 2
Q ss_pred eEEEEEccCHHHHHHhhchhccccccccchheehhccCCCCcccccccEEEEEeCCeEE-EEecccccc
Q 016804 294 ASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIV-WQGMTHEFT 361 (382)
Q Consensus 294 ~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~-~~g~~~~~~ 361 (382)
|||+||||++++..+||+| ++|++|+++ +.|+.+++.
T Consensus 212 -tviiisHd~~~~~~~~d~i------------------------------~~l~~g~i~~~~g~~~~~~ 249 (556)
T PRK11819 212 -TVVAVTHDRYFLDNVAGWI------------------------------LELDRGRGIPWEGNYSSWL 249 (556)
T ss_pred -eEEEEeCCHHHHHhhcCeE------------------------------EEEeCCEEEEecCCHHHHH
Confidence 8999999999999999988 999999986 778766543
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-44 Score=373.11 Aligned_cols=211 Identities=26% Similarity=0.393 Sum_probs=184.2
Q ss_pred cceEEEEeEEEEeCC---eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhc
Q 016804 89 DVLIDCRNVYKSFGE---KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~---~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~ 165 (382)
.++++++||+++|++ +.+|+++||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 19 ~~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~---------- 88 (549)
T PRK13545 19 KPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA---------- 88 (549)
T ss_pred cceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee----------
Confidence 457999999999976 4699999999999999999999999999999999999999999999999641
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCC
Q 016804 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (382)
Q Consensus 166 ~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~ 245 (382)
++.+.+.+++.+|++||+.+.... .+.+.++..+++.++++.+++.++.++++.+||||||||++|||||+.
T Consensus 89 -----~i~~~~~l~~~lTV~EnL~l~~~~-~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~-- 160 (549)
T PRK13545 89 -----LIAISSGLNGQLTGIENIELKGLM-MGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHI-- 160 (549)
T ss_pred -----eEEeccccCCCCcHHHHHHhhhhh-cCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHh--
Confidence 122234566778999999875422 224455556677889999999999999999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchhe
Q 016804 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVV 325 (382)
Q Consensus 246 ~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~ 325 (382)
+|++|||||||+|||+.++..+.+.|++++++| .|+|++|||++++.++|||+
T Consensus 161 -----~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G----------~TIIIVSHdl~~i~~l~DrI------------ 213 (549)
T PRK13545 161 -----NPDILVIDEALSVGDQTFTKKCLDKMNEFKEQG----------KTIFFISHSLSQVKSFCTKA------------ 213 (549)
T ss_pred -----CCCEEEEECCcccCCHHHHHHHHHHHHHHHhCC----------CEEEEEECCHHHHHHhCCEE------------
Confidence 699999999999999999999999999997665 59999999999999999988
Q ss_pred ehhccCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 326 IILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 326 ~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|++++.|+++++..
T Consensus 214 ------------------ivL~~GkIv~~G~~~el~~ 232 (549)
T PRK13545 214 ------------------LWLHYGQVKEYGDIKEVVD 232 (549)
T ss_pred ------------------EEEECCEEEEECCHHHHHh
Confidence 9999999999998877654
|
|
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-44 Score=383.48 Aligned_cols=223 Identities=30% Similarity=0.493 Sum_probs=194.8
Q ss_pred ceEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhh--
Q 016804 90 VLIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE-- 163 (382)
Q Consensus 90 ~~I~~~nvs~~yg~----~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~-- 163 (382)
++|+++|++++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++........
T Consensus 3 ~~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 82 (648)
T PRK10535 3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ 82 (648)
T ss_pred cEEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHH
Confidence 47999999999953 479999999999999999999999999999999999999999999999998765432221
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhc
Q 016804 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIF 243 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~ 243 (382)
..+..++|+||++.+|+++|+.||+.+.... .+....+.++++.++++.+|+.+..++.+.+|||||+||++|||||+.
T Consensus 83 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~-~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~ 161 (648)
T PRK10535 83 LRREHFGFIFQRYHLLSHLTAAQNVEVPAVY-AGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMN 161 (648)
T ss_pred HHhccEEEEeCCcccCCCCCHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence 1234699999999999999999999876532 223444556678899999999999999999999999999999999997
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccch
Q 016804 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHID 323 (382)
Q Consensus 244 ~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~ 323 (382)
+|++|||||||+|||+.+++.+.++|+++++++ .|+|++||+++.+. .|||+
T Consensus 162 -------~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g----------~tilivsH~~~~~~-~~d~i---------- 213 (648)
T PRK10535 162 -------GGQVILADEPTGALDSHSGEEVMAILHQLRDRG----------HTVIIVTHDPQVAA-QAERV---------- 213 (648)
T ss_pred -------CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcC----------CEEEEECCCHHHHH-hCCEE----------
Confidence 699999999999999999999999999998765 59999999999875 58877
Q ss_pred heehhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 324 VVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|+++++|++.+..
T Consensus 214 --------------------~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 214 --------------------IEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred --------------------EEEECCEEEeecCccccc
Confidence 999999999999888753
|
|
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=331.53 Aligned_cols=192 Identities=23% Similarity=0.337 Sum_probs=165.7
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
+|+++|++++|+++.+++ +||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++... .+..++
T Consensus 1 ~l~~~~l~~~~~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~------~~~~~~ 73 (195)
T PRK13541 1 MLSLHQLQFNIEQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNI------AKPYCT 73 (195)
T ss_pred CeEEEEeeEEECCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChh------hhhhEE
Confidence 488999999998766665 9999999999999999999999999999999999999999999876431 122589
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
|++|++.+++.+||+||+.+..... . ..+.+.++++.+++.+..++.+.+||||||||++|||||+.
T Consensus 74 ~~~~~~~~~~~~tv~~~l~~~~~~~-~-----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~------- 140 (195)
T PRK13541 74 YIGHNLGLKLEMTVFENLKFWSEIY-N-----SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIAC------- 140 (195)
T ss_pred eccCCcCCCccCCHHHHHHHHHHhc-c-----cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhc-------
Confidence 9999988877899999998754221 1 13356778999999988899999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|++|||||||++||+.++..+.++|++..+++ .|+|++||+++++.. +|.+
T Consensus 141 ~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~----------~tiii~sh~~~~i~~-~~~~ 192 (195)
T PRK13541 141 QSDLWLLDEVETNLSKENRDLLNNLIVMKANSG----------GIVLLSSHLESSIKS-AQIL 192 (195)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCccccch-hhee
Confidence 699999999999999999999999998776555 599999999998876 6643
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-44 Score=374.79 Aligned_cols=252 Identities=21% Similarity=0.271 Sum_probs=193.8
Q ss_pred hhhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCcceEEEEeEE
Q 016804 19 VSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRNVY 98 (382)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvs 98 (382)
+..++..+++.. .....+....+|+.+....|....... . .+. .....|+++||+
T Consensus 275 ~~~pl~~l~~~~-----~~~~~~~~a~~ri~~l~~~~~~~~~~~----~---------------~~~-~~~~~i~~~~v~ 329 (547)
T PRK10522 275 LRTPLLSAVGAL-----PTLLSAQVAFNKLNKLALAPYKAEFPR----P---------------QAF-PDWQTLELRNVT 329 (547)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhcccccccccc----c---------------ccc-CcCceEEEEEEE
Confidence 345666555555 456677788888888765443111000 0 000 011249999999
Q ss_pred EEeCC-eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCC
Q 016804 99 KSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAA 177 (382)
Q Consensus 99 ~~yg~-~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~ 177 (382)
|+|++ .++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|+++|+++....... . +.+|+||+|++.
T Consensus 330 f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~-~-~~~i~~v~q~~~ 407 (547)
T PRK10522 330 FAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPED-Y-RKLFSAVFTDFH 407 (547)
T ss_pred EEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHH-H-hhheEEEecChh
Confidence 99965 56999999999999999999999999999999999999999999999999987543222 2 336999999999
Q ss_pred CCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCC-----CCCCChHHHHHHHHHHHHhcCCCCCCCCC
Q 016804 178 LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL-----PSELSGGMKKRVALARSIIFDNTKESVEP 252 (382)
Q Consensus 178 l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~-----~~~LSGGqrQRVaIArAL~~~~~~~a~~P 252 (382)
+|+ .|+++| + . ...++.+.++++.+++....+.. ..+||||||||++|||||++ +|
T Consensus 408 lf~-~ti~~n---~----~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~-------~~ 468 (547)
T PRK10522 408 LFD-QLLGPE---G----K----PANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAE-------ER 468 (547)
T ss_pred HHH-Hhhccc---c----C----chHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhc-------CC
Confidence 997 488887 1 1 11234567788899987654322 35899999999999999997 59
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccC
Q 016804 253 EVLLYDEPTAGLDPIASTVVEDLIRSVHK-KGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAV 331 (382)
Q Consensus 253 ~iLLLDEPtagLD~~~~~~l~~lL~~l~~-~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~ 331 (382)
++|||||||++||+.+++.+.+.+.++.+ .+ +|+|+|||+++.+. .||++
T Consensus 469 ~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~----------~tvi~itH~~~~~~-~~d~i------------------ 519 (547)
T PRK10522 469 DILLLDEWAADQDPHFRREFYQVLLPLLQEMG----------KTIFAISHDDHYFI-HADRL------------------ 519 (547)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHhCC----------CEEEEEEechHHHH-hCCEE------------------
Confidence 99999999999999999999999887654 34 59999999998765 57766
Q ss_pred CCCcccccccEEEEEeCCeEEEEecc
Q 016804 332 APDKEVFFIYRLIFLYEGKIVWQGMT 357 (382)
Q Consensus 332 ~~~~~~~~~~~ii~l~~G~i~~~g~~ 357 (382)
++|++|++++....
T Consensus 520 ------------~~l~~G~i~e~~~~ 533 (547)
T PRK10522 520 ------------LEMRNGQLSELTGE 533 (547)
T ss_pred ------------EEEECCEEEEecCC
Confidence 99999999987533
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=378.66 Aligned_cols=204 Identities=24% Similarity=0.388 Sum_probs=179.4
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
.++|+++||+++|+++.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+ .+
T Consensus 317 ~~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-------------~~ 383 (530)
T PRK15064 317 RNALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-------------AN 383 (530)
T ss_pred CceEEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-------------eE
Confidence 45899999999999888999999999999999999999999999999999999999999999873 15
Q ss_pred EEEEecCCC--CCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHHHHHHhcCC
Q 016804 169 IGLVFQSAA--LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSIIFDN 245 (382)
Q Consensus 169 Ig~V~Q~~~--l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaIArAL~~~~ 245 (382)
|||++|++. +++.+|+.+|+.+.. . .. ..++++.++++.+++. +..++++.+|||||||||+|||||+.
T Consensus 384 i~~~~q~~~~~~~~~~t~~~~~~~~~--~--~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~-- 455 (530)
T PRK15064 384 IGYYAQDHAYDFENDLTLFDWMSQWR--Q--EG--DDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQ-- 455 (530)
T ss_pred EEEEcccccccCCCCCcHHHHHHHhc--c--CC--ccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhc--
Confidence 999999974 566789999986521 1 11 1234578899999994 67899999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchhe
Q 016804 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVV 325 (382)
Q Consensus 246 ~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~ 325 (382)
+|++|||||||++||+.++..+.+.|+++ . .|||+||||++++..+|||+
T Consensus 456 -----~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~-----------~tvi~vsHd~~~~~~~~d~i------------ 505 (530)
T PRK15064 456 -----KPNVLVMDEPTNHMDMESIESLNMALEKY--E-----------GTLIFVSHDREFVSSLATRI------------ 505 (530)
T ss_pred -----CCCEEEEcCCCCCCCHHHHHHHHHHHHHC--C-----------CEEEEEeCCHHHHHHhCCEE------------
Confidence 69999999999999999999999999886 2 28999999999999999988
Q ss_pred ehhccCCCCcccccccEEEEEeCCeEE-EEecccccc
Q 016804 326 IILGAVAPDKEVFFIYRLIFLYEGKIV-WQGMTHEFT 361 (382)
Q Consensus 326 ~~~~~~~~~~~~~~~~~ii~l~~G~i~-~~g~~~~~~ 361 (382)
++|++|+++ +.|++.++.
T Consensus 506 ------------------~~l~~g~i~~~~g~~~~~~ 524 (530)
T PRK15064 506 ------------------IEITPDGVVDFSGTYEEYL 524 (530)
T ss_pred ------------------EEEECCeEEEcCCCHHHHH
Confidence 999999998 778776664
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=338.47 Aligned_cols=196 Identities=30% Similarity=0.481 Sum_probs=167.7
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCC--CCCHHHHHH
Q 016804 112 FKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFD--SLTVRENVG 189 (382)
Q Consensus 112 l~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~--~lTV~eni~ 189 (382)
|+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .+.+++|+||++.++. .+|+.+|+.
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~-------~~~~i~~v~q~~~~~~~~~~tv~~~l~ 73 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGK-------GWRHIGYVPQRHEFAWDFPISVAHTVM 73 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchH-------hhCcEEEecccccccCCCCccHHHHHH
Confidence 5789999999999999999999999999999999999999987421 1236999999987632 479999998
Q ss_pred hhHhhcCC---CCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCH
Q 016804 190 FLLYENSK---MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDP 266 (382)
Q Consensus 190 ~~~~~~~~---~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~ 266 (382)
++.....+ .......+++.++++.+++++..++++.+||||||||++|||||++ +|++|||||||++||+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~-------~p~llilDEP~~~LD~ 146 (223)
T TIGR03771 74 SGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALAT-------RPSVLLLDEPFTGLDM 146 (223)
T ss_pred hccccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhc-------CCCEEEEeCCcccCCH
Confidence 75321111 1122334568889999999988999999999999999999999997 6999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccCCCCcccccccEEEEE
Q 016804 267 IASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFL 346 (382)
Q Consensus 267 ~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l 346 (382)
.++..+.+.|+++.+++ .|+|++|||++++.++||++ ++|
T Consensus 147 ~~~~~l~~~l~~~~~~~----------~tvii~sH~~~~~~~~~d~i------------------------------~~l 186 (223)
T TIGR03771 147 PTQELLTELFIELAGAG----------TAILMTTHDLAQAMATCDRV------------------------------VLL 186 (223)
T ss_pred HHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHhCCEE------------------------------EEE
Confidence 99999999999998765 59999999999999999987 888
Q ss_pred eCCeEEEEeccccccc
Q 016804 347 YEGKIVWQGMTHEFTS 362 (382)
Q Consensus 347 ~~G~i~~~g~~~~~~~ 362 (382)
+|++++.|+++++..
T Consensus 187 -~G~i~~~~~~~~~~~ 201 (223)
T TIGR03771 187 -NGRVIADGTPQQLQD 201 (223)
T ss_pred -CCEEEeecCHHHhcC
Confidence 799999998888754
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-44 Score=320.95 Aligned_cols=152 Identities=32% Similarity=0.599 Sum_probs=138.2
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
|+++||+++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ..+..+.+++|
T Consensus 1 l~~~~l~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~-~~~~~~~~i~~ 79 (163)
T cd03216 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFAS-PRDARRAGIAM 79 (163)
T ss_pred CEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCC-HHHHHhcCeEE
Confidence 47899999999889999999999999999999999999999999999999999999999999876432 11222336999
Q ss_pred EecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCC
Q 016804 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~ 251 (382)
+|| ||||||||++|||||+. +
T Consensus 80 ~~q----------------------------------------------------LS~G~~qrl~laral~~-------~ 100 (163)
T cd03216 80 VYQ----------------------------------------------------LSVGERQMVEIARALAR-------N 100 (163)
T ss_pred EEe----------------------------------------------------cCHHHHHHHHHHHHHhc-------C
Confidence 999 99999999999999997 5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 252 P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
|++|||||||++||+.+++.+.++|+++++++ .|+|++|||++++..+|||+
T Consensus 101 p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~----------~tiii~sh~~~~~~~~~d~~ 152 (163)
T cd03216 101 ARLLILDEPTAALTPAEVERLFKVIRRLRAQG----------VAVIFISHRLDEVFEIADRV 152 (163)
T ss_pred CCEEEEECCCcCCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHhCCEE
Confidence 99999999999999999999999999997665 59999999999999999988
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=387.80 Aligned_cols=215 Identities=30% Similarity=0.500 Sum_probs=187.1
Q ss_pred EEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC--ccEEEECCEECCCCCChhhhccceEE
Q 016804 93 DCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD--KGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 93 ~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~--sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
..+|++++|+++++|+|+|+++++||++||+|||||||||||++|+|+.+|+ +|+|.++|+++.. . . +.++|
T Consensus 70 ~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~----~-~-~~~i~ 143 (659)
T PLN03211 70 KISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK----Q-I-LKRTG 143 (659)
T ss_pred ccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch----h-h-ccceE
Confidence 3677889998899999999999999999999999999999999999999985 8999999998531 1 1 23699
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhc--CCCCHHHHHHHHHHHHHHcCCcccc-----cCCCCCCChHHHHHHHHHHHHhc
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYEN--SKMRDEQISELVKENLAAVGLKGVE-----DRLPSELSGGMKKRVALARSIIF 243 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~--~~~~~~~~~~~v~~~L~~~gL~~~~-----~~~~~~LSGGqrQRVaIArAL~~ 243 (382)
||+|++.+++.+||+||+.+..... ...++++..++++++++.+||.+.. ++.+++|||||||||+|||||+.
T Consensus 144 yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~ 223 (659)
T PLN03211 144 FVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLI 223 (659)
T ss_pred EECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHh
Confidence 9999999999999999999865322 1234455567789999999998765 44578899999999999999997
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHH-HHHHhhchhccccccccc
Q 016804 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS-TIRRAVDRLCLFQIFGHI 322 (382)
Q Consensus 244 ~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~-~~~~~aDrv~~~~~~~~~ 322 (382)
+|+||+|||||+|||+.++..+.+.|++++++| +|||++||+++ .+.+++|++
T Consensus 224 -------~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g----------~TvI~~sH~~~~~i~~~~D~i--------- 277 (659)
T PLN03211 224 -------NPSLLILDEPTSGLDATAAYRLVLTLGSLAQKG----------KTIVTSMHQPSSRVYQMFDSV--------- 277 (659)
T ss_pred -------CCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCC----------CEEEEEecCCCHHHHHhhceE---------
Confidence 599999999999999999999999999998766 59999999998 588899887
Q ss_pred hheehhccCCCCcccccccEEEEEeCCeEEEEeccccc
Q 016804 323 DVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEF 360 (382)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~ 360 (382)
++|++|+++..|+++++
T Consensus 278 ---------------------ilL~~G~iv~~G~~~~~ 294 (659)
T PLN03211 278 ---------------------LVLSEGRCLFFGKGSDA 294 (659)
T ss_pred ---------------------EEecCCcEEEECCHHHH
Confidence 99999999999987664
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=325.91 Aligned_cols=162 Identities=41% Similarity=0.680 Sum_probs=145.3
Q ss_pred EEEEeEEEEeCCe--eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 92 IDCRNVYKSFGEK--HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 92 I~~~nvs~~yg~~--~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
|+++|++++|+++ .+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... ... .+.++
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~-~~~-~~~~i 78 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLD-LES-LRKNI 78 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcC-HHH-HHhhE
Confidence 4789999999876 7999999999999999999999999999999999999999999999999865432 112 23369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
+|+||++.+|+ .|++||+ ||||||||++|||||+.
T Consensus 79 ~~~~~~~~~~~-~t~~e~l--------------------------------------LS~G~~~rl~la~al~~------ 113 (171)
T cd03228 79 AYVPQDPFLFS-GTIRENI--------------------------------------LSGGQRQRIAIARALLR------ 113 (171)
T ss_pred EEEcCCchhcc-chHHHHh--------------------------------------hCHHHHHHHHHHHHHhc------
Confidence 99999998887 5999987 99999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|++|||||||+|||+.++..+.++|+++.+ + +|+|++|||++++.. ||++
T Consensus 114 -~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~----------~tii~~sh~~~~~~~-~d~~ 164 (171)
T cd03228 114 -DPPILILDEATSALDPETEALILEALRALAK-G----------KTVIVIAHRLSTIRD-ADRI 164 (171)
T ss_pred -CCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-C----------CEEEEEecCHHHHHh-CCEE
Confidence 6999999999999999999999999999864 4 599999999999987 8887
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-44 Score=412.47 Aligned_cols=223 Identities=27% Similarity=0.421 Sum_probs=187.6
Q ss_pred eEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 91 LIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 91 ~I~~~nvs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
.|+++||+++|++ ..+|+||||+|++||.+||||+||||||||+++|+|+++|++|+|++||+|+..+.... . +.+
T Consensus 1308 ~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~-L-R~~ 1385 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRE-L-RRQ 1385 (1560)
T ss_pred eEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHH-H-Hhc
Confidence 4999999999964 35999999999999999999999999999999999999999999999999987753333 2 346
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChHHHHHHHH
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVAL 237 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGGqrQRVaI 237 (382)
||||||+|.||+. ||++||... ...+ ++++.++++.++++++..+.| ..||||||||++|
T Consensus 1386 I~iVpQdp~LF~g-TIreNIdp~----~~~s----deeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaL 1456 (1560)
T PTZ00243 1386 FSMIPQDPVLFDG-TVRQNVDPF----LEAS----SAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCM 1456 (1560)
T ss_pred ceEECCCCccccc-cHHHHhCcc----cCCC----HHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHH
Confidence 9999999999985 999999642 1122 345778899999987655543 5799999999999
Q ss_pred HHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccc
Q 016804 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQ 317 (382)
Q Consensus 238 ArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~ 317 (382)
||||+++ +|+|||||||||+||+.+.+.+++.|++..++ +|+|+|+|+++++.. ||+|
T Consensus 1457 ARALL~~------~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~-----------~TvI~IAHRl~ti~~-~DrI---- 1514 (1560)
T PTZ00243 1457 ARALLKK------GSGFILMDEATANIDPALDRQIQATVMSAFSA-----------YTVITIAHRLHTVAQ-YDKI---- 1514 (1560)
T ss_pred HHHHhcC------CCCEEEEeCCCccCCHHHHHHHHHHHHHHCCC-----------CEEEEEeccHHHHHh-CCEE----
Confidence 9999972 38999999999999999999999999987543 599999999999976 5655
Q ss_pred ccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHH
Q 016804 318 IFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFA 372 (382)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 372 (382)
+||++|+|++.|+++++....+....+++
T Consensus 1515 --------------------------lVLd~G~VvE~Gt~~eLl~~~~~~f~~l~ 1543 (1560)
T PTZ00243 1515 --------------------------IVMDHGAVAEMGSPRELVMNRQSIFHSMV 1543 (1560)
T ss_pred --------------------------EEEECCEEEEECCHHHHHhCCCCHHHHHH
Confidence 99999999999998888754344444443
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-44 Score=333.37 Aligned_cols=194 Identities=23% Similarity=0.339 Sum_probs=157.4
Q ss_pred EEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCCh--hhhccceE
Q 016804 93 DCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD--EEISGLRI 169 (382)
Q Consensus 93 ~~~nvs~~yg-~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~--~~~~~~~I 169 (382)
.+.|+.++|+ ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...... ....+..+
T Consensus 2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 81 (218)
T cd03290 2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSV 81 (218)
T ss_pred eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceE
Confidence 5789999997 46799999999999999999999999999999999999999999999999876432111 11122369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCccc-----------ccCCCCCCChHHHHHHHHH
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGV-----------EDRLPSELSGGMKKRVALA 238 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~-----------~~~~~~~LSGGqrQRVaIA 238 (382)
+|++|++.+|+ .|++||+.+... ...+ ...++++.+++.+. .++++.+|||||||||+||
T Consensus 82 ~~~~q~~~~~~-~t~~~nl~~~~~----~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~la 152 (218)
T cd03290 82 AYAAQKPWLLN-ATVEENITFGSP----FNKQ----RYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVA 152 (218)
T ss_pred EEEcCCCcccc-ccHHHHHhhcCc----CCHH----HHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHH
Confidence 99999999885 799999987431 1221 22345556665432 3467899999999999999
Q ss_pred HHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHH--HHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVED--LIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 239 rAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~--lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
|||+. +|++|||||||++||+.++..+++ +++.+.+++ .|+|++||+++.+. .||++
T Consensus 153 ral~~-------~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~----------~tii~~sH~~~~~~-~~d~i 211 (218)
T cd03290 153 RALYQ-------NTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDK----------RTLVLVTHKLQYLP-HADWI 211 (218)
T ss_pred HHHhh-------CCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCC----------CEEEEEeCChHHHh-hCCEE
Confidence 99997 699999999999999999999998 677766555 59999999999985 58877
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-44 Score=376.45 Aligned_cols=208 Identities=29% Similarity=0.419 Sum_probs=177.7
Q ss_pred ceEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 90 VLIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 90 ~~I~~~nvs~~yg-~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
.+|+++||+++|+ ++++|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.+++. .+
T Consensus 3 ~~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-------------~~ 69 (552)
T TIGR03719 3 YIYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPG-------------IK 69 (552)
T ss_pred EEEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-------------CE
Confidence 5799999999998 778999999999999999999999999999999999999999999998751 15
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcC-------------CCCHHH----------------------HHHHHHHHHHH
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENS-------------KMRDEQ----------------------ISELVKENLAA 213 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~-------------~~~~~~----------------------~~~~v~~~L~~ 213 (382)
||||||++.+++.+||.||+.++..... .....+ ..+++.++++.
T Consensus 70 i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 149 (552)
T TIGR03719 70 VGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDA 149 (552)
T ss_pred EEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhh
Confidence 9999999999999999999987532100 000010 12456678888
Q ss_pred cCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCc
Q 016804 214 VGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNI 293 (382)
Q Consensus 214 ~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~ 293 (382)
+|+.. .++++.+|||||||||+|||||+. +|++|||||||++||+.++..+.+.|+++ +
T Consensus 150 ~~l~~-~~~~~~~LSgGqkqrv~la~al~~-------~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~---------- 208 (552)
T TIGR03719 150 LRCPP-WDADVTKLSGGERRRVALCRLLLS-------KPDMLLLDEPTNHLDAESVAWLEQHLQEY---P---------- 208 (552)
T ss_pred CCCCc-ccCchhhcCHHHHHHHHHHHHHhc-------CCCEEEEcCCCCCCChHHHHHHHHHHHhC---C----------
Confidence 88854 688999999999999999999997 69999999999999999999999999876 2
Q ss_pred eEEEEEccCHHHHHHhhchhccccccccchheehhccCCCCcccccccEEEEEeCCeEE-EEecccccc
Q 016804 294 ASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIV-WQGMTHEFT 361 (382)
Q Consensus 294 ~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~-~~g~~~~~~ 361 (382)
.|+|+||||++.+..+||++ ++|++|+++ +.|+..++.
T Consensus 209 ~tvIiisHd~~~~~~~~d~v------------------------------~~l~~g~i~~~~g~~~~~~ 247 (552)
T TIGR03719 209 GTVVAVTHDRYFLDNVAGWI------------------------------LELDRGRGIPWEGNYSSWL 247 (552)
T ss_pred CeEEEEeCCHHHHHhhcCeE------------------------------EEEECCEEEEecCCHHHHH
Confidence 28999999999999999988 999999975 778776654
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-43 Score=340.59 Aligned_cols=210 Identities=25% Similarity=0.389 Sum_probs=170.0
Q ss_pred CcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccc
Q 016804 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (382)
Q Consensus 88 ~~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~ 167 (382)
..+.|+++|+++. ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 36 ~~~~l~i~nls~~--~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g--------------- 98 (282)
T cd03291 36 DDNNLFFSNLCLV--GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG--------------- 98 (282)
T ss_pred CCCeEEEEEEEEe--cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC---------------
Confidence 3456999999985 46799999999999999999999999999999999999999999999987
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc-----------cccCCCCCCChHHHHHHH
Q 016804 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-----------VEDRLPSELSGGMKKRVA 236 (382)
Q Consensus 168 ~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~-----------~~~~~~~~LSGGqrQRVa 236 (382)
+|+|++|++.+|+. ||+||+.+... .... .+.++++.+++.+ ..++.+.+||||||||++
T Consensus 99 ~i~yv~q~~~l~~~-tv~enl~~~~~----~~~~----~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~ 169 (282)
T cd03291 99 RISFSSQFSWIMPG-TIKENIIFGVS----YDEY----RYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARIS 169 (282)
T ss_pred EEEEEeCccccccc-CHHHHhhcccc----cCHH----HHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHH
Confidence 38999999998884 99999987431 1111 1223344444433 233456799999999999
Q ss_pred HHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHH-HHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcc
Q 016804 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLI-RSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCL 315 (382)
Q Consensus 237 IArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL-~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~ 315 (382)
|||||+. +|++|||||||++||+.++..+.+.+ +++.+ + .|||++||+++.+. .||++
T Consensus 170 lAraL~~-------~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~-~----------~tIiiisH~~~~~~-~~d~i-- 228 (282)
T cd03291 170 LARAVYK-------DADLYLLDSPFGYLDVFTEKEIFESCVCKLMA-N----------KTRILVTSKMEHLK-KADKI-- 228 (282)
T ss_pred HHHHHhc-------CCCEEEEECCCccCCHHHHHHHHHHHHHHhhC-C----------CEEEEEeCChHHHH-hCCEE--
Confidence 9999997 69999999999999999999998754 56643 4 49999999999985 68877
Q ss_pred ccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHH
Q 016804 316 FQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFA 372 (382)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 372 (382)
++|++|++++.|++.++..........++
T Consensus 229 ----------------------------~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 257 (282)
T cd03291 229 ----------------------------LILHEGSSYFYGTFSELQSLRPDFSSKLM 257 (282)
T ss_pred ----------------------------EEEECCEEEEECCHHHHHhcchHHHHHHh
Confidence 99999999999988887644334444443
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=405.61 Aligned_cols=242 Identities=26% Similarity=0.396 Sum_probs=187.9
Q ss_pred hhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCcceEEEEeEEEEeCC---eeeeEeeeE
Q 016804 36 SFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRNVYKSFGE---KHILRGVSF 112 (382)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvs~~yg~---~~iL~~vsl 112 (382)
....++..+.+|+...+..++....... .. . .+... .|+++||+|+|++ .++|+|+||
T Consensus 346 ~~~~~a~~a~~ri~~ii~~~~~~~~~~~------~~--------~---~~~~~--~I~~~nVsf~Y~~~~~~~vL~~isl 406 (1466)
T PTZ00265 346 TEYMKSLEATNSLYEIINRKPLVENNDD------GK--------K---LKDIK--KIQFKNVRFHYDTRKDVEIYKDLNF 406 (1466)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCCC------Cc--------c---CCCCC--cEEEEEEEEEcCCCCCCceeccceE
Confidence 3456777888889888877653211000 00 0 01111 4999999999975 369999999
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEE-CCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhh
Q 016804 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI-RGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFL 191 (382)
Q Consensus 113 ~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i-~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~ 191 (382)
+|++||++||+||||||||||+++|+|+++|++|+|++ +|.++.... ..+. +.+||||+|++.+|+ .||+|||.++
T Consensus 407 ~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~-~~~l-r~~Ig~V~Q~~~LF~-~TI~eNI~~g 483 (1466)
T PTZ00265 407 TLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDIN-LKWW-RSKIGVVSQDPLLFS-NSIKNNIKYS 483 (1466)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCC-HHHH-HHhccEecccccchh-ccHHHHHHhc
Confidence 99999999999999999999999999999999999999 567765432 2222 336999999999998 5999999986
Q ss_pred HhhcCC---------C-----------------------------------------CHHHHHHHHHHHHHHcCCcccc-
Q 016804 192 LYENSK---------M-----------------------------------------RDEQISELVKENLAAVGLKGVE- 220 (382)
Q Consensus 192 ~~~~~~---------~-----------------------------------------~~~~~~~~v~~~L~~~gL~~~~- 220 (382)
...... . .....++.+.++++.++++++.
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~ 563 (1466)
T PTZ00265 484 LYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVS 563 (1466)
T ss_pred CCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHH
Confidence 421000 0 0011235678889999887664
Q ss_pred ----------cCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCCCCCC
Q 016804 221 ----------DRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHK-KGENGLAN 289 (382)
Q Consensus 221 ----------~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~-~g~~~~~~ 289 (382)
.+.+.+||||||||++|||||++ +|+||||||||++||+.++..+++.|+++.+ +|
T Consensus 564 ~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~-------~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g------ 630 (1466)
T PTZ00265 564 ALPDKYETLVGSNASKLSGGQKQRISIARAIIR-------NPKILILDEATSSLDNKSEYLVQKTINNLKGNEN------ 630 (1466)
T ss_pred hCccccCceeCCCCCcCCHHHHHHHHHHHHHhc-------CCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCC------
Confidence 34567899999999999999997 5999999999999999999999999999975 34
Q ss_pred CCCceEEEEEccCHHHHHHhhchhcccc
Q 016804 290 PGNIASYVVVTHQHSTIRRAVDRLCLFQ 317 (382)
Q Consensus 290 ~~~~~tiIivTHdl~~~~~~aDrv~~~~ 317 (382)
+|+|+|||+++++ +.||+|++|+
T Consensus 631 ----~TvIiIsHrls~i-~~aD~Iivl~ 653 (1466)
T PTZ00265 631 ----RITIIIAHRLSTI-RYANTIFVLS 653 (1466)
T ss_pred ----CEEEEEeCCHHHH-HhCCEEEEEe
Confidence 5999999999998 5799986665
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-43 Score=369.56 Aligned_cols=208 Identities=31% Similarity=0.478 Sum_probs=178.6
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
.++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ + .+
T Consensus 322 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~------------~~ 388 (556)
T PRK11819 322 DKVIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T------------VK 388 (556)
T ss_pred CeEEEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c------------eE
Confidence 4689999999999988999999999999999999999999999999999999999999999954 1 15
Q ss_pred EEEEecCC-CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc-cccCCCCCCChHHHHHHHHHHHHhcCCC
Q 016804 169 IGLVFQSA-ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALARSIIFDNT 246 (382)
Q Consensus 169 Ig~V~Q~~-~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~-~~~~~~~~LSGGqrQRVaIArAL~~~~~ 246 (382)
|||+||++ .+++.+||+||+.++.... ..... ...++++++.+++.. ..++++.+|||||||||+|||||+.
T Consensus 389 i~~v~q~~~~~~~~~tv~e~l~~~~~~~-~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~--- 462 (556)
T PRK11819 389 LAYVDQSRDALDPNKTVWEEISGGLDII-KVGNR--EIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQ--- 462 (556)
T ss_pred EEEEeCchhhcCCCCCHHHHHHhhcccc-ccccc--HHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhc---
Confidence 99999997 6888899999998764211 11111 123457899999974 5799999999999999999999997
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchhee
Q 016804 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVI 326 (382)
Q Consensus 247 ~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~ 326 (382)
+|++|||||||+|||+.++..+.++|+++ .+ |+|+||||++++..+|||+
T Consensus 463 ----~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~-----------tvi~vtHd~~~~~~~~d~i------------- 512 (556)
T PRK11819 463 ----GGNVLLLDEPTNDLDVETLRALEEALLEF--PG-----------CAVVISHDRWFLDRIATHI------------- 512 (556)
T ss_pred ----CCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CC-----------eEEEEECCHHHHHHhCCEE-------------
Confidence 69999999999999999999999999987 23 8999999999999999988
Q ss_pred hhccCCCCcccccccEEEEEeC-CeEE-EEeccccccc
Q 016804 327 ILGAVAPDKEVFFIYRLIFLYE-GKIV-WQGMTHEFTS 362 (382)
Q Consensus 327 ~~~~~~~~~~~~~~~~ii~l~~-G~i~-~~g~~~~~~~ 362 (382)
++|++ |++. +.|+..++.+
T Consensus 513 -----------------~~l~~~g~~~~~~g~~~~~~~ 533 (556)
T PRK11819 513 -----------------LAFEGDSQVEWFEGNFQEYEE 533 (556)
T ss_pred -----------------EEEECCCeEEEecCCHHHHHH
Confidence 89986 7876 5676666653
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-43 Score=315.79 Aligned_cols=156 Identities=29% Similarity=0.458 Sum_probs=141.0
Q ss_pred EEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 92 IDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 92 I~~~nvs~~yg-~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
|+++|++++|+ ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. .+++
T Consensus 1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-------------~~i~ 67 (166)
T cd03223 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-------------EDLL 67 (166)
T ss_pred CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-------------ceEE
Confidence 47899999995 467999999999999999999999999999999999999999999999873 2699
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
|++|++.++ ..|++||+.+. ++.+||||||||++|||||+.
T Consensus 68 ~~~q~~~~~-~~tv~~nl~~~-------------------------------~~~~LS~G~~~rv~laral~~------- 108 (166)
T cd03223 68 FLPQRPYLP-LGTLREQLIYP-------------------------------WDDVLSGGEQQRLAFARLLLH------- 108 (166)
T ss_pred EECCCCccc-cccHHHHhhcc-------------------------------CCCCCCHHHHHHHHHHHHHHc-------
Confidence 999999876 47999999652 468999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|++|||||||++||+.++..+.++|+++ + .|+|++|||++.+ .+|||+
T Consensus 109 ~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~----------~tiiivsh~~~~~-~~~d~i 157 (166)
T cd03223 109 KPKFVFLDEATSALDEESEDRLYQLLKEL---G----------ITVISVGHRPSLW-KFHDRV 157 (166)
T ss_pred CCCEEEEECCccccCHHHHHHHHHHHHHh---C----------CEEEEEeCChhHH-hhCCEE
Confidence 69999999999999999999999999886 3 4999999999865 588877
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-43 Score=369.33 Aligned_cols=190 Identities=33% Similarity=0.507 Sum_probs=165.7
Q ss_pred CcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccc
Q 016804 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (382)
Q Consensus 88 ~~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~ 167 (382)
..++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++++ + .
T Consensus 319 ~~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~------------~ 385 (552)
T TIGR03719 319 GDKVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T------------V 385 (552)
T ss_pred CCeEEEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c------------e
Confidence 35689999999999988999999999999999999999999999999999999999999999954 1 1
Q ss_pred eEEEEecCC-CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc-cccCCCCCCChHHHHHHHHHHHHhcCC
Q 016804 168 RIGLVFQSA-ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALARSIIFDN 245 (382)
Q Consensus 168 ~Ig~V~Q~~-~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~-~~~~~~~~LSGGqrQRVaIArAL~~~~ 245 (382)
+|||+||++ .+++.+||.||+.++.... ..... ...+.++++.+++.. ..++++.+|||||||||+|||||+.
T Consensus 386 ~i~~v~q~~~~~~~~~tv~e~l~~~~~~~-~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~-- 460 (552)
T TIGR03719 386 KLAYVDQSRDALDPNKTVWEEISGGLDII-QLGKR--EVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKS-- 460 (552)
T ss_pred EEEEEeCCccccCCCCcHHHHHHhhcccc-ccCcc--hHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhh--
Confidence 599999997 4788899999998864211 11111 223557899999974 5799999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 246 ~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|++|||||||+|||+.++..+.++|+++. + |+|+||||++++.++|||+
T Consensus 461 -----~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-----------~viivsHd~~~~~~~~d~i 510 (552)
T TIGR03719 461 -----GGNVLLLDEPTNDLDVETLRALEEALLEFA--G-----------CAVVISHDRWFLDRIATHI 510 (552)
T ss_pred -----CCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--C-----------eEEEEeCCHHHHHHhCCEE
Confidence 699999999999999999999999999872 3 8999999999999999988
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-44 Score=326.12 Aligned_cols=235 Identities=31% Similarity=0.524 Sum_probs=207.7
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC-EECCCCCChhhhccce
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG-RKRAGLISDEEISGLR 168 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G-~~i~~~~~~~~~~~~~ 168 (382)
++++++||+++|++..+|+++||++.+||.-+|||||||||||+|..|.|..+|++|+|+++| .++..+ +...+.+..
T Consensus 4 ~iL~~~~vsVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~-~e~~IAr~G 82 (249)
T COG4674 4 IILYLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKL-PEHRIARAG 82 (249)
T ss_pred ceEEEeceEEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccC-CHHHHHHhc
Confidence 579999999999999999999999999999999999999999999999999999999999999 788765 455566667
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCCC-------CHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHH
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSKM-------RDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSI 241 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~-------~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL 241 (382)
||-=||.|..|+.+||+||+.+.....+.. ...+-+++++++|+..||.+..++....||-||||++.|++-+
T Consensus 83 IGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll 162 (249)
T COG4674 83 IGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLL 162 (249)
T ss_pred cCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheee
Confidence 999999999999999999999876432221 1233356799999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccccc
Q 016804 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGH 321 (382)
Q Consensus 242 ~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~ 321 (382)
++ +|++||||||+||+-.......-++|++++.. .+|++|.|||.+++.+|++|
T Consensus 163 ~Q-------~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~-----------hsilVVEHDM~Fvr~~A~~V-------- 216 (249)
T COG4674 163 AQ-------DPKLLLLDEPVAGMTDAETEKTAELLKSLAGK-----------HSILVVEHDMGFVREIADKV-------- 216 (249)
T ss_pred cc-------CCcEEEecCccCCCcHHHHHHHHHHHHHHhcC-----------ceEEEEeccHHHHHHhhhee--------
Confidence 98 59999999999999999999999999999876 49999999999999999988
Q ss_pred chheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHHcCC
Q 016804 322 IDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFASGS 375 (382)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 375 (382)
-||++|.+..+|+.+++. .+|.+.+.|-|+
T Consensus 217 ----------------------TVlh~G~VL~EGsld~v~--~dp~ViEvYLGr 246 (249)
T COG4674 217 ----------------------TVLHEGSVLAEGSLDEVQ--NDPKVIEVYLGR 246 (249)
T ss_pred ----------------------EEEeccceeecccHHHhh--cCcceEeeeccc
Confidence 999999999999888875 355555555443
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-43 Score=373.38 Aligned_cols=203 Identities=27% Similarity=0.497 Sum_probs=177.3
Q ss_pred CcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccc
Q 016804 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (382)
Q Consensus 88 ~~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~ 167 (382)
+.++|+++||+++|+++.+|+|+||+|.+||++||+||||||||||||+|+|+++|++|+|.+++. .
T Consensus 309 ~~~~l~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------------~ 375 (638)
T PRK10636 309 PNPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-------------I 375 (638)
T ss_pred CCceEEEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-------------E
Confidence 456899999999999889999999999999999999999999999999999999999999999741 1
Q ss_pred eEEEEecCC--CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHHHHHHhcC
Q 016804 168 RIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSIIFD 244 (382)
Q Consensus 168 ~Ig~V~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaIArAL~~~ 244 (382)
+|||++|+. .+.+..|+.+++... ......+.+.++|+.+++. +..++++.+|||||||||+|||||+.
T Consensus 376 ~igy~~Q~~~~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~- 447 (638)
T PRK10636 376 KLGYFAQHQLEFLRADESPLQHLARL-------APQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQ- 447 (638)
T ss_pred EEEEecCcchhhCCccchHHHHHHHh-------CchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhc-
Confidence 599999985 356667888876421 1112345678899999996 47899999999999999999999997
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchh
Q 016804 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDV 324 (382)
Q Consensus 245 ~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~ 324 (382)
+|+||||||||++||+.++..+.++|+++ +| |||+||||++++.++|||+
T Consensus 448 ------~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-----------tvi~vSHd~~~~~~~~d~i----------- 497 (638)
T PRK10636 448 ------RPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-----------ALVVVSHDRHLLRSTTDDL----------- 497 (638)
T ss_pred ------CCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-----------eEEEEeCCHHHHHHhCCEE-----------
Confidence 69999999999999999999999999987 33 8999999999999999988
Q ss_pred eehhccCCCCcccccccEEEEEeCCeEE-EEeccccc
Q 016804 325 VIILGAVAPDKEVFFIYRLIFLYEGKIV-WQGMTHEF 360 (382)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~ii~l~~G~i~-~~g~~~~~ 360 (382)
++|++|+++ +.|+.+++
T Consensus 498 -------------------~~l~~G~i~~~~g~~~~~ 515 (638)
T PRK10636 498 -------------------YLVHDGKVEPFDGDLEDY 515 (638)
T ss_pred -------------------EEEECCEEEEcCCCHHHH
Confidence 999999997 67877776
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-43 Score=368.91 Aligned_cols=187 Identities=31% Similarity=0.419 Sum_probs=167.8
Q ss_pred CcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccc
Q 016804 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (382)
Q Consensus 88 ~~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~ 167 (382)
+.++|+++|++++|++. .|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++ +
T Consensus 337 ~~~~l~~~~ls~~~~~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~---~------------ 400 (590)
T PRK13409 337 RETLVEYPDLTKKLGDF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE---L------------ 400 (590)
T ss_pred CceEEEEcceEEEECCE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe---e------------
Confidence 45789999999999875 5999999999999999999999999999999999999999999985 1
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 016804 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (382)
Q Consensus 168 ~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~ 247 (382)
+|||+||++.+++.+||+||+.++... ... ...+.++++.+++.+..++++.+|||||||||+|||||++
T Consensus 401 ~i~y~~Q~~~~~~~~tv~e~l~~~~~~---~~~---~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~---- 470 (590)
T PRK13409 401 KISYKPQYIKPDYDGTVEDLLRSITDD---LGS---SYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSR---- 470 (590)
T ss_pred eEEEecccccCCCCCcHHHHHHHHhhh---cCh---HHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhc----
Confidence 489999999888889999999875321 111 2246789999999988999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 248 ~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|++|||||||++||+.++..+.++|++++++ + .|+|+||||++++..+|||+
T Consensus 471 ---~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g----------~tviivsHD~~~~~~~aDrv 524 (590)
T PRK13409 471 ---DADLYLLDEPSAHLDVEQRLAVAKAIRRIAEERE----------ATALVVDHDIYMIDYISDRL 524 (590)
T ss_pred ---CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHhCCEE
Confidence 69999999999999999999999999999775 4 59999999999999999988
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-44 Score=321.35 Aligned_cols=201 Identities=31% Similarity=0.493 Sum_probs=175.4
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
.++++++.+.-++.++|+++||++++||+++|.||||||||||+|+++-|.+|++|+++|.|++++.+..+.. +.+|+
T Consensus 3 lle~kq~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~--Rq~Vs 80 (223)
T COG4619 3 LLELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAY--RQQVS 80 (223)
T ss_pred chHHHHHHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHH--HHHHH
Confidence 4677788777788999999999999999999999999999999999999999999999999999987654443 34799
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc-cccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~-~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
|+.|.|.||+. ||+||+.|+...+.... ......+.++++++.+ .+++.+.+||||||||++|+|-|..
T Consensus 81 Y~~Q~paLfg~-tVeDNlifP~~~r~rr~---dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~------ 150 (223)
T COG4619 81 YCAQTPALFGD-TVEDNLIFPWQIRNRRP---DRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQF------ 150 (223)
T ss_pred HHHcCcccccc-chhhccccchHHhccCC---ChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhc------
Confidence 99999999985 99999999865432211 2344677899999964 7899999999999999999999987
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
-|+|||||||||+||+.+.+.+.++|.++.++.. .+++.||||-+++.+.+|++
T Consensus 151 -~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~---------vAv~WiTHd~dqa~rha~k~ 204 (223)
T COG4619 151 -MPKILLLDEITSALDESNKRNIEEMIHRYVREQN---------VAVLWITHDKDQAIRHADKV 204 (223)
T ss_pred -CCceEEecCchhhcChhhHHHHHHHHHHHhhhhc---------eEEEEEecChHHHhhhhheE
Confidence 4999999999999999999999999999975432 69999999999999999988
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-43 Score=318.17 Aligned_cols=237 Identities=31% Similarity=0.508 Sum_probs=210.1
Q ss_pred ceEEEEeEEEEeCC---------eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCC
Q 016804 90 VLIDCRNVYKSFGE---------KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS 160 (382)
Q Consensus 90 ~~I~~~nvs~~yg~---------~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~ 160 (382)
+.++++|++|.|.. ..+++.|||++++|+.+||||.||||||||.|+|+|+++|++|+|++||+.+.. .
T Consensus 3 ~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~--~ 80 (267)
T COG4167 3 TLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHF--G 80 (267)
T ss_pred chhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccc--c
Confidence 46899999999843 358999999999999999999999999999999999999999999999998753 2
Q ss_pred hhhhccceEEEEecCCC--CCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHH
Q 016804 161 DEEISGLRIGLVFQSAA--LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVAL 237 (382)
Q Consensus 161 ~~~~~~~~Ig~V~Q~~~--l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaI 237 (382)
+...+..+|-++||+|+ +.|.+.+.+-+..++.....+.++...+++.+.|+.+||- +..+-+|..||-||||||++
T Consensus 81 Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaL 160 (267)
T COG4167 81 DYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVAL 160 (267)
T ss_pred chHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHH
Confidence 33223346999999985 7788888888888887777788888889999999999995 67899999999999999999
Q ss_pred HHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccc
Q 016804 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQ 317 (382)
Q Consensus 238 ArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~ 317 (382)
||||+- +|+|+|.||..++||...+.++.+++-+|.++-+ .+.|.|+.++..+..++|.|
T Consensus 161 ARALIL-------~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~G---------iSyiYV~QhlG~iKHi~D~v---- 220 (267)
T COG4167 161 ARALIL-------RPKIIIADEALASLDMSMRSQLINLMLELQEKQG---------ISYIYVTQHIGMIKHISDQV---- 220 (267)
T ss_pred HHHHhc-------CCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhC---------ceEEEEechhhHhhhhcccE----
Confidence 999996 6999999999999999999999999999987632 69999999999999999987
Q ss_pred ccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 318 IFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
+||++|++++.|.+++++ .+.++.++.+...
T Consensus 221 --------------------------iVM~EG~vvE~G~t~~v~a~P~~~~TkRlieS 252 (267)
T COG4167 221 --------------------------LVMHEGEVVERGSTADVLASPLHELTKRLIES 252 (267)
T ss_pred --------------------------EEEecCceeecCChhhhhcCCccHHHHHHHHH
Confidence 999999999999999975 6788888877664
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-43 Score=337.04 Aligned_cols=194 Identities=28% Similarity=0.426 Sum_probs=164.9
Q ss_pred EeEEEEeCCe-eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEE-----------ECCEECCCCCChh
Q 016804 95 RNVYKSFGEK-HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY-----------IRGRKRAGLISDE 162 (382)
Q Consensus 95 ~nvs~~yg~~-~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~-----------i~G~~i~~~~~~~ 162 (382)
.||+|+|+++ .+|+|+|+ +++||+++|+||||||||||||+|+|+++|++|+|+ ++|+++.......
T Consensus 4 ~~~~~~y~~~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~ 82 (255)
T cd03236 4 DEPVHRYGPNSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKL 82 (255)
T ss_pred cCcceeecCcchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHh
Confidence 4799999865 59999995 999999999999999999999999999999999996 7787764321111
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHh
Q 016804 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSII 242 (382)
Q Consensus 163 ~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~ 242 (382)
......++|++|+..+++ .++.+|+.+.+ ......+.+.++++.+|+.+..++.+.+||||||||++|||||+
T Consensus 83 ~~~~~~i~~~~~~~~~~~-~~~~~~i~~~l------~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~ 155 (255)
T cd03236 83 LEGDVKVIVKPQYVDLIP-KAVKGKVGELL------KKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALA 155 (255)
T ss_pred hhcccceeeecchhccCc-hHHHHHHHHHh------chhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence 111224899999998888 48888887643 12233456788999999998889999999999999999999999
Q ss_pred cCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 243 ~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
. +|+++||||||++||+.++..+.++|+++.+++ .|+|++|||++.+.++||++
T Consensus 156 ~-------~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~----------~tIIiiSHd~~~~~~~ad~i 209 (255)
T cd03236 156 R-------DADFYFFDEPSSYLDIKQRLNAARLIRELAEDD----------NYVLVVEHDLAVLDYLSDYI 209 (255)
T ss_pred h-------CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcC----------CEEEEEECCHHHHHHhCCEE
Confidence 7 599999999999999999999999999998765 59999999999999999988
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-42 Score=396.13 Aligned_cols=221 Identities=25% Similarity=0.449 Sum_probs=186.3
Q ss_pred eEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 91 LIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 91 ~I~~~nvs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
.|+++||+++|+. .++|+||||+|++||.+||+|+||||||||+++|+|+++ ++|+|++||.++....... . +.+
T Consensus 1217 ~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~-l-R~~ 1293 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQT-W-RKA 1293 (1490)
T ss_pred eEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHH-H-Hhc
Confidence 4999999999963 679999999999999999999999999999999999997 7999999999987653332 2 337
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChHHHHHHHH
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVAL 237 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGGqrQRVaI 237 (382)
|+||||+|.+|+. ||++||.... ..+ ++++.++|++++|.++..+.| ..||||||||++|
T Consensus 1294 is~IpQdp~LF~G-TIR~NLdp~~----~~t----deei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~L 1364 (1490)
T TIGR01271 1294 FGVIPQKVFIFSG-TFRKNLDPYE----QWS----DEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCL 1364 (1490)
T ss_pred eEEEeCCCccCcc-CHHHHhCccc----CCC----HHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHH
Confidence 9999999999985 9999995421 122 345778899999977665554 3799999999999
Q ss_pred HHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccc
Q 016804 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQ 317 (382)
Q Consensus 238 ArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~ 317 (382)
||||++ +|+|||||||||+||+.+...+++.|++..++ +|+|+|||+++.+.. ||||
T Consensus 1365 ARALLr-------~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~-----------~TvI~IaHRl~ti~~-~DrI---- 1421 (1490)
T TIGR01271 1365 ARSILS-------KAKILLLDEPSAHLDPVTLQIIRKTLKQSFSN-----------CTVILSEHRVEALLE-CQQF---- 1421 (1490)
T ss_pred HHHHhC-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCC-----------CEEEEEecCHHHHHh-CCEE----
Confidence 999997 59999999999999999999999999987543 599999999999986 6666
Q ss_pred ccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHHc
Q 016804 318 IFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFAS 373 (382)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 373 (382)
++|++|+|++.|++.++... +....+++.
T Consensus 1422 --------------------------lvL~~G~ivE~g~p~~Ll~~-~~~f~~l~~ 1450 (1490)
T TIGR01271 1422 --------------------------LVIEGSSVKQYDSIQKLLNE-TSLFKQAMS 1450 (1490)
T ss_pred --------------------------EEEECCEEEEeCCHHHHHcC-CcHHHHHHH
Confidence 99999999999999888753 444444443
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=331.32 Aligned_cols=174 Identities=29% Similarity=0.418 Sum_probs=150.8
Q ss_pred eeeeEeeeEEEe-----CCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCC
Q 016804 104 KHILRGVSFKIR-----HGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAAL 178 (382)
Q Consensus 104 ~~iL~~vsl~i~-----~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l 178 (382)
.+.+++++|++. +||+++|+||||||||||+++|+|+++|++|+|.++|+ +|+|++|++.+
T Consensus 7 ~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~--------------~i~~~~q~~~~ 72 (246)
T cd03237 7 KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD--------------TVSYKPQYIKA 72 (246)
T ss_pred ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc--------------eEEEecccccC
Confidence 345666777665 79999999999999999999999999999999999883 48999999887
Q ss_pred CCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEe
Q 016804 179 FDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYD 258 (382)
Q Consensus 179 ~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLD 258 (382)
++.+||.||+.+...... .. .+...++++.+++.+..++++.+|||||||||+|||||+. +|+++|||
T Consensus 73 ~~~~tv~e~l~~~~~~~~--~~---~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~-------~p~llllD 140 (246)
T cd03237 73 DYEGTVRDLLSSITKDFY--TH---PYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSK-------DADIYLLD 140 (246)
T ss_pred CCCCCHHHHHHHHhhhcc--cc---HHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhc-------CCCEEEEe
Confidence 667899999976432111 11 2235678999999988999999999999999999999997 69999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 259 EPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 259 EPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
|||++||+.++..+.++|++++++ + +|+|+||||++++..+|||+
T Consensus 141 EPt~~LD~~~~~~l~~~l~~~~~~~~----------~tiiivsHd~~~~~~~~d~i 186 (246)
T cd03237 141 EPSAYLDVEQRLMASKVIRRFAENNE----------KTAFVVEHDIIMIDYLADRL 186 (246)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEE
Confidence 999999999999999999999765 4 59999999999999999988
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=369.23 Aligned_cols=191 Identities=27% Similarity=0.420 Sum_probs=166.4
Q ss_pred CCcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhcc
Q 016804 87 DGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (382)
Q Consensus 87 ~~~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~ 166 (382)
.+.++|+++||+++|+++++|+|+||+|++|+++||+||||||||||||+|+|+++|++|+|++ |.+
T Consensus 315 ~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~------------ 381 (635)
T PRK11147 315 SGKIVFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTK------------ 381 (635)
T ss_pred CCCceEEEeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCC------------
Confidence 3467899999999999889999999999999999999999999999999999999999999998 532
Q ss_pred ceEEEEecCC-CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHHHHHHhcC
Q 016804 167 LRIGLVFQSA-ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSIIFD 244 (382)
Q Consensus 167 ~~Ig~V~Q~~-~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaIArAL~~~ 244 (382)
.+|||++|++ .+++.+||.||+.+..... ... ...+.+.++++.+++. +..++++.+|||||||||+|||||+.
T Consensus 382 ~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~-~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~- 457 (635)
T PRK11147 382 LEVAYFDQHRAELDPEKTVMDNLAEGKQEV-MVN--GRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLK- 457 (635)
T ss_pred cEEEEEeCcccccCCCCCHHHHHHhhcccc-ccc--chHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhc-
Confidence 1599999986 5888899999998753211 011 1134577889999996 56899999999999999999999997
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 245 ~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|++|||||||++||+.++..+.++|+++ .+ |||+||||++++..+||++
T Consensus 458 ------~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~-----------tvi~vSHd~~~~~~~~d~i 507 (635)
T PRK11147 458 ------PSNLLILDEPTNDLDVETLELLEELLDSY--QG-----------TVLLVSHDRQFVDNTVTEC 507 (635)
T ss_pred ------CCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CC-----------eEEEEECCHHHHHHhcCEE
Confidence 69999999999999999999999999876 32 8999999999999999988
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-43 Score=328.23 Aligned_cols=224 Identities=30% Similarity=0.430 Sum_probs=190.0
Q ss_pred CCCcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhc
Q 016804 86 DDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165 (382)
Q Consensus 86 ~~~~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~ 165 (382)
...+++|+++||+++|+++++|+|+|++|++||.++|+|||||||||||++++|.++|++|.+.+.|+....-....++
T Consensus 26 ~~~~~li~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~el- 104 (257)
T COG1119 26 EINEPLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFEL- 104 (257)
T ss_pred CCCcceEEecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHH-
Confidence 3456789999999999999999999999999999999999999999999999999999999999999987543222333
Q ss_pred cceEEEEecC--CCCCCCCCHHHHHHhhHhhcCC----CCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHH
Q 016804 166 GLRIGLVFQS--AALFDSLTVRENVGFLLYENSK----MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALAR 239 (382)
Q Consensus 166 ~~~Ig~V~Q~--~~l~~~lTV~eni~~~~~~~~~----~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIAr 239 (382)
+++||||.-. ..+.+..+|+|-|.-+.+..-+ ...++..+++..+++.+|+.+.++++..+||-||||||.|||
T Consensus 105 rk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaR 184 (257)
T COG1119 105 RKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIAR 184 (257)
T ss_pred HHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHH
Confidence 3479999864 3345567888888665432111 123455677889999999999999999999999999999999
Q ss_pred HHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccc
Q 016804 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQI 318 (382)
Q Consensus 240 AL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~ 318 (382)
||++ +|++|||||||+|||..+++.+.+.|.++... +. .++|+|||..+++....+++
T Consensus 185 ALv~-------~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~---------~~ll~VtHh~eEi~~~~th~----- 243 (257)
T COG1119 185 ALVK-------DPELLILDEPAQGLDLIAREQLLNRLEELAASPGA---------PALLFVTHHAEEIPPCFTHR----- 243 (257)
T ss_pred HHhc-------CCCEEEecCccccCChHHHHHHHHHHHHHhcCCCC---------ceEEEEEcchhhcccccceE-----
Confidence 9998 59999999999999999999999999999765 21 48999999999999887766
Q ss_pred cccchheehhccCCCCcccccccEEEEEeCCeEEEEec
Q 016804 319 FGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGM 356 (382)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~ 356 (382)
+.+++|+++.+|.
T Consensus 244 -------------------------lll~~g~v~~~g~ 256 (257)
T COG1119 244 -------------------------LLLKEGEVVAQGK 256 (257)
T ss_pred -------------------------EEeeCCceeeccc
Confidence 9999999999883
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=351.12 Aligned_cols=261 Identities=29% Similarity=0.485 Sum_probs=209.5
Q ss_pred HHhhhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCcceEEEEe
Q 016804 17 KSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRN 96 (382)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~n 96 (382)
.....|++.+-..+ ..+-.++++-+|+...+..-+.....-.. |.+.+. |.+++
T Consensus 286 gRaLaPid~aI~~W-----kq~~~Ar~s~~Rl~~lL~~~p~~~~~m~L-------------------P~P~g~--L~Ve~ 339 (580)
T COG4618 286 GRALAPIDLAIANW-----KQFVAARQSYKRLNELLAELPAAAERMPL-------------------PAPQGA--LSVER 339 (580)
T ss_pred hhhhccHHHHHHHH-----HHHHHHHHHHHHHHHHHHhCccccCCCCC-------------------CCCCce--eeEee
Confidence 34456666544444 45667888889998887664422222111 222333 89999
Q ss_pred EEEEeC--CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEec
Q 016804 97 VYKSFG--EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQ 174 (382)
Q Consensus 97 vs~~yg--~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q 174 (382)
+++.=+ .+++|+++||++.+||.+|||||||||||||.|+|.|.++|.+|.|++||.++..+..+. -.++|||+||
T Consensus 340 l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~--lG~hiGYLPQ 417 (580)
T COG4618 340 LTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQ--LGRHIGYLPQ 417 (580)
T ss_pred eeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHH--hccccCcCcc
Confidence 998553 367999999999999999999999999999999999999999999999999998875433 3457999999
Q ss_pred CCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChHHHHHHHHHHHHhc
Q 016804 175 SAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVALARSIIF 243 (382)
Q Consensus 175 ~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGGqrQRVaIArAL~~ 243 (382)
+..||+. ||.|||+-. .++...+.+-++.+..|.+++.-+.| ..||||||||++|||||..
T Consensus 418 dVeLF~G-TIaeNIaRf-------~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG 489 (580)
T COG4618 418 DVELFDG-TIAENIARF-------GEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYG 489 (580)
T ss_pred cceecCC-cHHHHHHhc-------cccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcC
Confidence 9999996 999999642 22222344667788888877766666 6899999999999999997
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccch
Q 016804 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHID 323 (382)
Q Consensus 244 ~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~ 323 (382)
+|.+++||||-|+||...+..+.+.|.+++++| .|+|+|||+.+.+. .+|+|
T Consensus 490 -------~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG----------~~vvviaHRPs~L~-~~Dki---------- 541 (580)
T COG4618 490 -------DPFLVVLDEPNSNLDSEGEAALAAAILAAKARG----------GTVVVIAHRPSALA-SVDKI---------- 541 (580)
T ss_pred -------CCcEEEecCCCCCcchhHHHHHHHHHHHHHHcC----------CEEEEEecCHHHHh-hccee----------
Confidence 599999999999999999999999999999887 59999999998876 45655
Q ss_pred heehhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 324 VVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++...|+.+|++
T Consensus 542 --------------------lvl~~G~~~~FG~r~eVL 559 (580)
T COG4618 542 --------------------LVLQDGRIAAFGPREEVL 559 (580)
T ss_pred --------------------eeecCChHHhcCCHHHHH
Confidence 999999999999777764
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-42 Score=365.77 Aligned_cols=207 Identities=25% Similarity=0.375 Sum_probs=171.2
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
||+++||+|+||++++|+||||+|++|+++||+||||||||||||+|+|+++|++|+|.++|.. +|+
T Consensus 1 ~i~i~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-------------~i~ 67 (638)
T PRK10636 1 MIVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-------------QLA 67 (638)
T ss_pred CEEEEEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-------------EEE
Confidence 5899999999999999999999999999999999999999999999999999999999998731 488
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhh-----------------------c---CCCCHHHHHHHHHHHHHHcCCc-ccccCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYE-----------------------N---SKMRDEQISELVKENLAAVGLK-GVEDRL 223 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~-----------------------~---~~~~~~~~~~~v~~~L~~~gL~-~~~~~~ 223 (382)
|++|++..+. .|+.+++...... . ......+..+++.++++.+|+. +..+++
T Consensus 68 ~~~q~~~~~~-~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~ 146 (638)
T PRK10636 68 WVNQETPALP-QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERP 146 (638)
T ss_pred EEecCCCCCC-CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCc
Confidence 8888654443 4665554321000 0 0001112345688899999997 578999
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCH
Q 016804 224 PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQH 303 (382)
Q Consensus 224 ~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl 303 (382)
+.+|||||||||+|||||+. +|+||||||||++||+.++..+.+.|+++ + .|||+||||+
T Consensus 147 ~~~LSgGerqRv~LA~aL~~-------~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~----------~tviivsHd~ 206 (638)
T PRK10636 147 VSDFSGGWRMRLNLAQALIC-------RSDLLLLDEPTNHLDLDAVIWLEKWLKSY---Q----------GTLILISHDR 206 (638)
T ss_pred hhhcCHHHHHHHHHHHHHcc-------CCCEEEEcCCCCcCCHHHHHHHHHHHHhC---C----------CeEEEEeCCH
Confidence 99999999999999999997 69999999999999999999999998876 2 3899999999
Q ss_pred HHHHHhhchhccccccccchheehhccCCCCcccccccEEEEEeCCeEE-EEecccccc
Q 016804 304 STIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIV-WQGMTHEFT 361 (382)
Q Consensus 304 ~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~-~~g~~~~~~ 361 (382)
+++.++|||+ ++|++|+++ +.|+.+.+.
T Consensus 207 ~~l~~~~d~i------------------------------~~L~~G~i~~~~g~~~~~~ 235 (638)
T PRK10636 207 DFLDPIVDKI------------------------------IHIEQQSLFEYTGNYSSFE 235 (638)
T ss_pred HHHHHhcCEE------------------------------EEEeCCEEEEecCCHHHHH
Confidence 9999999988 999999996 467655543
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-42 Score=319.88 Aligned_cols=190 Identities=22% Similarity=0.283 Sum_probs=159.7
Q ss_pred eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEE-ECCEECCCCCChhhhccceEEEEecCCCCCCCCC
Q 016804 105 HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY-IRGRKRAGLISDEEISGLRIGLVFQSAALFDSLT 183 (382)
Q Consensus 105 ~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~-i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lT 183 (382)
++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|. ++|..+ .+.|.+.+|+.+|
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~---------------~~~~~~~l~~~lt 65 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL---------------PLGANSFILPGLT 65 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee---------------ccccccccCCcCc
Confidence 379999999999999999999999999999999999999999997 776431 1234567888999
Q ss_pred HHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCC
Q 016804 184 VRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAG 263 (382)
Q Consensus 184 V~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtag 263 (382)
+.||+.+....+ +...++.. ..+.+.+++....++++.+||||||||++|||||+. +|+++||||||++
T Consensus 66 v~enl~~~~~~~-~~~~~~~~---~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~-------~p~llllDEP~~~ 134 (213)
T PRK15177 66 GEENARMMASLY-GLDGDEFS---HFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLL-------PCRLYIADGKLYT 134 (213)
T ss_pred HHHHHHHHHHHc-CCCHHHHH---HHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhc-------CCCEEEECCCCcc
Confidence 999998865432 23333322 234566788888899999999999999999999997 6999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccCCCCcccccccEE
Q 016804 264 LDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRL 343 (382)
Q Consensus 264 LD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 343 (382)
+|+.++..+.+.+.+..++ .|+|++||+++++..+||++
T Consensus 135 lD~~~~~~~~~~l~~~~~~-----------~~ii~vsH~~~~~~~~~d~i------------------------------ 173 (213)
T PRK15177 135 GDNATQLRMQAALACQLQQ-----------KGLIVLTHNPRLIKEHCHAF------------------------------ 173 (213)
T ss_pred CCHHHHHHHHHHHHHHhhC-----------CcEEEEECCHHHHHHhcCee------------------------------
Confidence 9999999999988665443 37999999999999999988
Q ss_pred EEEeCCeEEEEecccccc
Q 016804 344 IFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 344 i~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.++.++..
T Consensus 174 ~~l~~G~i~~~~~~~~~~ 191 (213)
T PRK15177 174 GVLLHGKITMCEDLAQAT 191 (213)
T ss_pred EEEECCeEEEeCCHHHHH
Confidence 999999999999777653
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=386.77 Aligned_cols=219 Identities=26% Similarity=0.440 Sum_probs=189.6
Q ss_pred CcceEEEEeEEEEeC----CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC---CCccEEEECCEECCCCCC
Q 016804 88 GDVLIDCRNVYKSFG----EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA---PDKGEVYIRGRKRAGLIS 160 (382)
Q Consensus 88 ~~~~I~~~nvs~~yg----~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~---p~sG~I~i~G~~i~~~~~ 160 (382)
+..+++++||+++|+ ++.+|+|||+++++||++||+|||||||||||++|+|+.+ |++|+|+++|+++..
T Consensus 756 ~~~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~--- 832 (1394)
T TIGR00956 756 GEDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS--- 832 (1394)
T ss_pred CCceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh---
Confidence 345689999999995 4679999999999999999999999999999999999998 789999999998631
Q ss_pred hhhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcC--CCCHHHHHHHHHHHHHHcCCcccccCCCC----CCChHHHHH
Q 016804 161 DEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENS--KMRDEQISELVKENLAAVGLKGVEDRLPS----ELSGGMKKR 234 (382)
Q Consensus 161 ~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~--~~~~~~~~~~v~~~L~~~gL~~~~~~~~~----~LSGGqrQR 234 (382)
. . ++++|||+|++.+++.+||+||+.+....+. ..+.++..++++++++.++|.+..++.+. +||||||||
T Consensus 833 -~-~-~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqR 909 (1394)
T TIGR00956 833 -S-F-QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKR 909 (1394)
T ss_pred -h-h-hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhH
Confidence 1 1 3369999999888889999999998754321 23445566788999999999988888887 799999999
Q ss_pred HHHHHHHhcCCCCCCCCCc-EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHH-HHHhhch
Q 016804 235 VALARSIIFDNTKESVEPE-VLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHST-IRRAVDR 312 (382)
Q Consensus 235 VaIArAL~~~~~~~a~~P~-iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~-~~~~aDr 312 (382)
|+|||||+. +|+ ||+|||||+|||+.++..+++.|++++++| .|||+++|+++. +.+.+||
T Consensus 910 l~Ia~aL~~-------~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g----------~tvI~t~H~~~~~~~~~~D~ 972 (1394)
T TIGR00956 910 LTIGVELVA-------KPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHG----------QAILCTIHQPSAILFEEFDR 972 (1394)
T ss_pred HHHHHHHHc-------CCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcC----------CEEEEEecCCCHHHHHhcCE
Confidence 999999997 597 999999999999999999999999998776 599999999987 4567887
Q ss_pred hccccccccchheehhccCCCCcccccccEEEEEeCC-eEEEEecccc
Q 016804 313 LCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEG-KIVWQGMTHE 359 (382)
Q Consensus 313 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G-~i~~~g~~~~ 359 (382)
+ ++|++| ++++.|++.+
T Consensus 973 v------------------------------l~L~~GG~iv~~G~~~~ 990 (1394)
T TIGR00956 973 L------------------------------LLLQKGGQTVYFGDLGE 990 (1394)
T ss_pred E------------------------------EEEcCCCEEEEECCccc
Confidence 7 999987 9999997643
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-42 Score=308.69 Aligned_cols=242 Identities=31% Similarity=0.485 Sum_probs=196.0
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEE-----CCCCCChhh
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK-----RAGLISDEE 163 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~-----i~~~~~~~~ 163 (382)
.|.+++++++|.||....+++|||++.+||+.||||.|||||||||+||++-+.|++|+|.+.-++ +..+...+.
T Consensus 4 ~PLL~V~~lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeR 83 (258)
T COG4107 4 KPLLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAER 83 (258)
T ss_pred CcceeehhhhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHH
Confidence 367999999999999999999999999999999999999999999999999999999999996532 222211111
Q ss_pred --hccceEEEEecCCC--CCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHHH
Q 016804 164 --ISGLRIGLVFQSAA--LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALA 238 (382)
Q Consensus 164 --~~~~~Ig~V~Q~~~--l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaIA 238 (382)
+.+...|||.|+|. |-...+...||..-+.......-..++..+.+||+++.++ ...+..|.++|||||||+.||
T Consensus 84 R~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiA 163 (258)
T COG4107 84 RRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIA 163 (258)
T ss_pred HHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHH
Confidence 11224899999984 4333344445533221111111234566678899999996 578999999999999999999
Q ss_pred HHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccc
Q 016804 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQI 318 (382)
Q Consensus 239 rAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~ 318 (382)
|-|+. .|+++++||||.|||...+..++++++.|..+-+ .++++||||+..+.-++||.
T Consensus 164 RnLVt-------~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~---------la~viVTHDl~VarLla~rl----- 222 (258)
T COG4107 164 RNLVT-------RPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELG---------LAVVIVTHDLAVARLLADRL----- 222 (258)
T ss_pred HHhcc-------CCceEEecCCCCCcchhhHHHHHHHHHHHHHhcC---------ceEEEEechhHHHHHhhhcc-----
Confidence 99996 6999999999999999999999999999987742 58999999999999999988
Q ss_pred cccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcCCC
Q 016804 319 FGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASGSL 376 (382)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~~~ 376 (382)
.+|++|+++++|-++.++ .+.+|+++-+.+..+
T Consensus 223 -------------------------mvmk~g~vve~GLTDrvLDDP~hPYTQLLVSsvL 256 (258)
T COG4107 223 -------------------------MVMKQGQVVESGLTDRVLDDPHHPYTQLLVSSVL 256 (258)
T ss_pred -------------------------eeecCCCEeccccccccccCCCCchHHHHHHHhc
Confidence 999999999999988876 578999988776543
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=349.01 Aligned_cols=214 Identities=29% Similarity=0.482 Sum_probs=180.9
Q ss_pred eEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 91 LIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 91 ~I~~~nvs~~yg-~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
-|+++||+|.|. ++++|+||||++.+|+.+|||||||+||||++|+|.++++.++|.|+|||+|+....... -|..|
T Consensus 537 ~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~S--LRs~I 614 (790)
T KOG0056|consen 537 KIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSS--LRSSI 614 (790)
T ss_pred eEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHH--HHHhc
Confidence 399999999995 688999999999999999999999999999999999999999999999999986542222 23369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChHHHHHHHHH
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVALA 238 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGGqrQRVaIA 238 (382)
|.||||..||++ |+..||.++. ...+ .+++.++.+..++++..-..| -.||||||||||||
T Consensus 615 GVVPQDtvLFNd-TI~yNIryak---~~As----neevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiA 686 (790)
T KOG0056|consen 615 GVVPQDTVLFND-TILYNIRYAK---PSAS----NEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIA 686 (790)
T ss_pred CcccCcceeecc-eeeeheeecC---CCCC----hHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHH
Confidence 999999999975 9999998853 1222 334556666666665544444 47999999999999
Q ss_pred HHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccc
Q 016804 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQI 318 (382)
Q Consensus 239 rAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~ 318 (382)
|++++ .|.+++|||.||+||..+++.++..|.+++.. +|.|+|.|+++++-+.
T Consensus 687 RtiLK-------~P~iIlLDEATSALDT~tER~IQaaL~rlca~-----------RTtIVvAHRLSTivnA--------- 739 (790)
T KOG0056|consen 687 RTILK-------APSIILLDEATSALDTNTERAIQAALARLCAN-----------RTTIVVAHRLSTIVNA--------- 739 (790)
T ss_pred HHHhc-------CCcEEEEcchhhhcCCccHHHHHHHHHHHhcC-----------CceEEEeeeehheecc---------
Confidence 99998 49999999999999999999999999999876 4899999999999874
Q ss_pred cccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccC
Q 016804 319 FGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSS 363 (382)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~ 363 (382)
|.|+++++|+|++.|..+|+...
T Consensus 740 ----------------------D~ILvi~~G~IvErG~HeeLl~r 762 (790)
T KOG0056|consen 740 ----------------------DLILVISNGRIVERGRHEELLKR 762 (790)
T ss_pred ----------------------cEEEEEeCCeEeecCcHHHHHhc
Confidence 45599999999999966666544
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=361.60 Aligned_cols=207 Identities=29% Similarity=0.476 Sum_probs=181.4
Q ss_pred CCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC---ccEEEECCEECCCCCChhhhccceEEEEecCCCC
Q 016804 102 GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD---KGEVYIRGRKRAGLISDEEISGLRIGLVFQSAAL 178 (382)
Q Consensus 102 g~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~---sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l 178 (382)
+++++|+|+|+++++||+++|+|||||||||||++|+|..+|+ +|+|.++|.++.. .. .+..+|||+|++.+
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~----~~-~~~~i~yv~Q~~~~ 110 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDA----KE-MRAISAYVQQDDLF 110 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCH----HH-Hhhhceeecccccc
Confidence 3577999999999999999999999999999999999999885 8999999998531 12 23369999999999
Q ss_pred CCCCCHHHHHHhhHhhcC--CCCHHHHHHHHHHHHHHcCCcccccCCCC------CCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 179 FDSLTVRENVGFLLYENS--KMRDEQISELVKENLAAVGLKGVEDRLPS------ELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 179 ~~~lTV~eni~~~~~~~~--~~~~~~~~~~v~~~L~~~gL~~~~~~~~~------~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
++.+||+||+.|+..... ....++..++++++++.+||.+..++.+. .|||||||||+|||||+.
T Consensus 111 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~------- 183 (617)
T TIGR00955 111 IPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLT------- 183 (617)
T ss_pred CccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHc-------
Confidence 999999999999764321 23456667789999999999988888876 599999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHH-HHHHhhchhccccccccchheehhc
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS-TIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~-~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
+|++|+|||||+|||+.+...+.+.|++++++| +|+|+++|+.+ ++.+++|++
T Consensus 184 ~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g----------~tvi~~~hq~~~~i~~~~D~i---------------- 237 (617)
T TIGR00955 184 DPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKG----------KTIICTIHQPSSELFELFDKI---------------- 237 (617)
T ss_pred CCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCC----------CEEEEEeCCCCHHHHHHhceE----------------
Confidence 599999999999999999999999999998766 59999999995 788899888
Q ss_pred cCCCCcccccccEEEEEeCCeEEEEeccccc
Q 016804 330 AVAPDKEVFFIYRLIFLYEGKIVWQGMTHEF 360 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~ 360 (382)
++|++|+++++|+++++
T Consensus 238 --------------~ll~~G~~v~~G~~~~~ 254 (617)
T TIGR00955 238 --------------ILMAEGRVAYLGSPDQA 254 (617)
T ss_pred --------------EEeeCCeEEEECCHHHH
Confidence 99999999999988764
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=361.57 Aligned_cols=189 Identities=23% Similarity=0.292 Sum_probs=159.1
Q ss_pred ceEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 90 VLIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 90 ~~I~~~nvs~~yg-~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
.+|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ +.+
T Consensus 450 ~~i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-------------~~~ 516 (659)
T TIGR00954 450 NGIKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-------------KGK 516 (659)
T ss_pred CeEEEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-------------CCc
Confidence 3699999999995 56799999999999999999999999999999999999999999998764 125
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC---------CCCChHHHHHHHHHH
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP---------SELSGGMKKRVALAR 239 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~---------~~LSGGqrQRVaIAr 239 (382)
|+||||++.+|+. |++||+.++............++++.++++.++++++.+++. .+||||||||++|||
T Consensus 517 i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iAR 595 (659)
T TIGR00954 517 LFYVPQRPYMTLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMAR 595 (659)
T ss_pred EEEECCCCCCCCc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHH
Confidence 9999999999986 999999876421100001112345678899999987776643 799999999999999
Q ss_pred HHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 240 AL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
||++ +|++|||||||++||+.++..+.+.+++. + .|+|+|||+++.+ +.||++
T Consensus 596 al~~-------~p~illLDEpts~LD~~~~~~l~~~l~~~---~----------~tvI~isH~~~~~-~~~d~i 648 (659)
T TIGR00954 596 LFYH-------KPQFAILDECTSAVSVDVEGYMYRLCREF---G----------ITLFSVSHRKSLW-KYHEYL 648 (659)
T ss_pred HHHc-------CCCEEEEeCCccCCCHHHHHHHHHHHHHc---C----------CEEEEEeCchHHH-HhCCEE
Confidence 9997 69999999999999999999999988763 4 4999999999987 568877
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-41 Score=358.92 Aligned_cols=206 Identities=30% Similarity=0.426 Sum_probs=168.3
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
+|+++||+++|+++++|+||||+|++|+++||+||||||||||||+|+|+++|++|+|.++|.. .++
T Consensus 3 ~l~i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~-------------~~~ 69 (635)
T PRK11147 3 LISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL-------------IVA 69 (635)
T ss_pred EEEEeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC-------------EEE
Confidence 6999999999999899999999999999999999999999999999999999999999998631 367
Q ss_pred EEecCCCCCCCCCHHHHHHhhH------------------------------hh---cCCCCHHHHHHHHHHHHHHcCCc
Q 016804 171 LVFQSAALFDSLTVRENVGFLL------------------------------YE---NSKMRDEQISELVKENLAAVGLK 217 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~------------------------------~~---~~~~~~~~~~~~v~~~L~~~gL~ 217 (382)
|++|++......++.+++..+. .. ..........+++.++++.+|+.
T Consensus 70 ~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 149 (635)
T PRK11147 70 RLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD 149 (635)
T ss_pred EeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC
Confidence 7777653333345555542110 00 00000112345678899999997
Q ss_pred ccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEE
Q 016804 218 GVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYV 297 (382)
Q Consensus 218 ~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiI 297 (382)
.++++.+|||||||||+|||||+. +|+||||||||++||+.++..+.++|+++. + |||
T Consensus 150 --~~~~~~~LSgGekqRv~LAraL~~-------~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~--~-----------tvl 207 (635)
T PRK11147 150 --PDAALSSLSGGWLRKAALGRALVS-------NPDVLLLDEPTNHLDIETIEWLEGFLKTFQ--G-----------SII 207 (635)
T ss_pred --CCCchhhcCHHHHHHHHHHHHHhc-------CCCEEEEcCCCCccCHHHHHHHHHHHHhCC--C-----------EEE
Confidence 388999999999999999999997 699999999999999999999999998872 2 899
Q ss_pred EEccCHHHHHHhhchhccccccccchheehhccCCCCcccccccEEEEEeCCeEEE-Eecccccc
Q 016804 298 VVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVW-QGMTHEFT 361 (382)
Q Consensus 298 ivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~-~g~~~~~~ 361 (382)
+||||..++.++||+| ++|++|+++. .|+..++.
T Consensus 208 ivsHd~~~l~~~~d~i------------------------------~~L~~G~i~~~~g~~~~~~ 242 (635)
T PRK11147 208 FISHDRSFIRNMATRI------------------------------VDLDRGKLVSYPGNYDQYL 242 (635)
T ss_pred EEeCCHHHHHHhcCeE------------------------------EEEECCEEEEecCCHHHHH
Confidence 9999999999999988 9999999974 57666543
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-41 Score=360.91 Aligned_cols=203 Identities=28% Similarity=0.481 Sum_probs=170.2
Q ss_pred cceEEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccc
Q 016804 89 DVLIDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~-~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~ 167 (382)
.++|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|++++. .
T Consensus 506 ~~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~-------------~ 572 (718)
T PLN03073 506 PPIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAK-------------V 572 (718)
T ss_pred CceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCc-------------e
Confidence 468999999999964 56999999999999999999999999999999999999999999998652 2
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhHhh-cCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHHHHHHhcCC
Q 016804 168 RIGLVFQSAALFDSLTVRENVGFLLYE-NSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSIIFDN 245 (382)
Q Consensus 168 ~Ig~V~Q~~~l~~~lTV~eni~~~~~~-~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaIArAL~~~~ 245 (382)
+|||++|++. +.+++.+|..+.... ..... .+.+.++|+.+|+. +..++++.+|||||||||+|||||+.
T Consensus 573 ~igyv~Q~~~--~~l~~~~~~~~~~~~~~~~~~----~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~-- 644 (718)
T PLN03073 573 RMAVFSQHHV--DGLDLSSNPLLYMMRCFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK-- 644 (718)
T ss_pred eEEEEecccc--ccCCcchhHHHHHHHhcCCCC----HHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhc--
Confidence 5999999862 345666665432211 11122 34577899999997 46789999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchhe
Q 016804 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVV 325 (382)
Q Consensus 246 ~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~ 325 (382)
+|++|||||||++||+.++..+.+.|.++ ++ |+|+||||++++..+|||+
T Consensus 645 -----~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-----------tvIivSHd~~~i~~~~drv------------ 694 (718)
T PLN03073 645 -----KPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-----------GVLMVSHDEHLISGSVDEL------------ 694 (718)
T ss_pred -----CCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-----------EEEEEECCHHHHHHhCCEE------------
Confidence 69999999999999999999988887664 33 8999999999999999988
Q ss_pred ehhccCCCCcccccccEEEEEeCCeEE-EEeccccc
Q 016804 326 IILGAVAPDKEVFFIYRLIFLYEGKIV-WQGMTHEF 360 (382)
Q Consensus 326 ~~~~~~~~~~~~~~~~~ii~l~~G~i~-~~g~~~~~ 360 (382)
++|++|+++ +.|+..++
T Consensus 695 ------------------~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 695 ------------------WVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred ------------------EEEECCEEEEeCCCHHHH
Confidence 999999998 66755443
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-41 Score=293.57 Aligned_cols=137 Identities=36% Similarity=0.647 Sum_probs=129.0
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
|+++|++++|++.++|+++||++++||+++|+||||||||||+++|+|+++|++|+|+++|+ ..++|
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-------------~~i~~ 67 (144)
T cd03221 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-------------VKIGY 67 (144)
T ss_pred CEEEEEEEEECCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-------------EEEEE
Confidence 47899999998888999999999999999999999999999999999999999999999984 15999
Q ss_pred EecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCC
Q 016804 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~ 251 (382)
+|| ||+||+||++|||||+. +
T Consensus 68 ~~~----------------------------------------------------lS~G~~~rv~laral~~-------~ 88 (144)
T cd03221 68 FEQ----------------------------------------------------LSGGEKMRLALAKLLLE-------N 88 (144)
T ss_pred Ecc----------------------------------------------------CCHHHHHHHHHHHHHhc-------C
Confidence 999 99999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 252 P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
|+++||||||++||+.++..+.+.|+++ + .|+|++||+++++..+||++
T Consensus 89 p~illlDEP~~~LD~~~~~~l~~~l~~~---~----------~til~~th~~~~~~~~~d~v 137 (144)
T cd03221 89 PNLLLLDEPTNHLDLESIEALEEALKEY---P----------GTVILVSHDRYFLDQVATKI 137 (144)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHc---C----------CEEEEEECCHHHHHHhCCEE
Confidence 9999999999999999999999999887 2 39999999999999999988
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=382.11 Aligned_cols=234 Identities=29% Similarity=0.445 Sum_probs=186.7
Q ss_pred hhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCcceEEEEeEEEEeCC---eeeeEeeeE
Q 016804 36 SFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRNVYKSFGE---KHILRGVSF 112 (382)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvs~~yg~---~~iL~~vsl 112 (382)
.....+....+|+...+..+......+. +.......|+++|++|+|+. +++|+|+||
T Consensus 579 ~~~~~a~~s~~RI~~~L~~~e~~~~~~~--------------------~~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl 638 (1622)
T PLN03130 579 TQAVNANVSLKRLEELLLAEERVLLPNP--------------------PLEPGLPAISIKNGYFSWDSKAERPTLSNINL 638 (1622)
T ss_pred HHHHHHHHHHHHHHHHHcCcccccccCC--------------------cccCCCCceEEEeeEEEccCCCCCceeeceeE
Confidence 4566778888999988876643211110 00001124999999999964 579999999
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCc-cEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhh
Q 016804 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDK-GEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFL 191 (382)
Q Consensus 113 ~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~s-G~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~ 191 (382)
+|++||.++|+||||||||||+++|+|+++|++ |+|.+.| +|+||+|+|.+|+ .||+|||.|+
T Consensus 639 ~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~---------------~Iayv~Q~p~Lfn-gTIreNI~fg 702 (1622)
T PLN03130 639 DVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRG---------------TVAYVPQVSWIFN-ATVRDNILFG 702 (1622)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcC---------------eEEEEcCccccCC-CCHHHHHhCC
Confidence 999999999999999999999999999999999 9998543 5999999999997 5999999986
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCC
Q 016804 192 LYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEP 260 (382)
Q Consensus 192 ~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEP 260 (382)
.. .+ ++++.++++.++|.+..+..| ..|||||||||+||||+.+ +|+|+|||||
T Consensus 703 ~~----~d----~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~-------~~~IlLLDEp 767 (1622)
T PLN03130 703 SP----FD----PERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYS-------NSDVYIFDDP 767 (1622)
T ss_pred Cc----cc----HHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhC-------CCCEEEECCC
Confidence 31 22 345677888888866555443 5799999999999999997 5999999999
Q ss_pred CCCCCHHHHHHHH-HHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccCCCCccccc
Q 016804 261 TAGLDPIASTVVE-DLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFF 339 (382)
Q Consensus 261 tagLD~~~~~~l~-~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (382)
||+||+...+.+. +.++.+. ++ +|+|+|||+++.+.. ||+|
T Consensus 768 tSALD~~~~~~I~~~~l~~~l-~~----------kTvIlVTH~l~~l~~-aD~I-------------------------- 809 (1622)
T PLN03130 768 LSALDAHVGRQVFDKCIKDEL-RG----------KTRVLVTNQLHFLSQ-VDRI-------------------------- 809 (1622)
T ss_pred ccccCHHHHHHHHHHHhhHHh-cC----------CEEEEEECCHhHHHh-CCEE--------------------------
Confidence 9999999988775 4566553 33 599999999988654 6766
Q ss_pred ccEEEEEeCCeEEEEeccccccc
Q 016804 340 IYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 340 ~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|+|+++|+.+++..
T Consensus 810 ----i~L~~G~i~e~Gt~~eL~~ 828 (1622)
T PLN03130 810 ----ILVHEGMIKEEGTYEELSN 828 (1622)
T ss_pred ----EEEeCCEEEEeCCHHHHHh
Confidence 9999999999998777653
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-41 Score=310.01 Aligned_cols=221 Identities=32% Similarity=0.446 Sum_probs=184.4
Q ss_pred eEEEEeEEEEeC-----CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhc
Q 016804 91 LIDCRNVYKSFG-----EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165 (382)
Q Consensus 91 ~I~~~nvs~~yg-----~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~ 165 (382)
|+++.|+.+.|. .+++|+++||+|++|+++.|+|.||||||||++.|+|-+.|++|+|.|+|.++....... +
T Consensus 1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~--R 78 (263)
T COG1101 1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAK--R 78 (263)
T ss_pred CcccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHH--H
Confidence 467888888884 257999999999999999999999999999999999999999999999999987653222 2
Q ss_pred cceEEEEecCCC--CCCCCCHHHHHHhhHhh--cCCCCH---HHHHHHHHHHHHHc--CCcccccCCCCCCChHHHHHHH
Q 016804 166 GLRIGLVFQSAA--LFDSLTVRENVGFLLYE--NSKMRD---EQISELVKENLAAV--GLKGVEDRLPSELSGGMKKRVA 236 (382)
Q Consensus 166 ~~~Ig~V~Q~~~--l~~~lTV~eni~~~~~~--~~~~~~---~~~~~~v~~~L~~~--gL~~~~~~~~~~LSGGqrQRVa 236 (382)
...++-|||+|. .++.+||+||+.+.... .++... ....+...+.++.+ ||+..++.+..-|||||||-++
T Consensus 79 A~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQals 158 (263)
T COG1101 79 ANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALS 158 (263)
T ss_pred hhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHH
Confidence 235889999984 69999999999886533 112222 22233344556665 4578889999999999999999
Q ss_pred HHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccc
Q 016804 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLF 316 (382)
Q Consensus 237 IArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~ 316 (382)
+++|-++ .|+||+|||-||+|||.....++++=.++.++.+ .|.+||||+|+.+.+|.+|.
T Consensus 159 L~MAtl~-------~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~k---------lTtlMVTHnm~~Al~yG~Rl--- 219 (263)
T COG1101 159 LLMATLH-------PPKILLLDEHTAALDPKTAEFVMELTAKIVEEHK---------LTTLMVTHNMEDALDYGNRL--- 219 (263)
T ss_pred HHHHhcC-------CCcEEEecchhhcCCcchHHHHHHHHHHHHHhcC---------CceEEEeccHHHHHhhCCeE---
Confidence 9999997 6999999999999999999999999999988764 69999999999999999988
Q ss_pred cccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccc
Q 016804 317 QIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHE 359 (382)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~ 359 (382)
|+|++|+|+.+-.-++
T Consensus 220 ---------------------------ImLh~G~IvlDv~g~~ 235 (263)
T COG1101 220 ---------------------------IMLHSGKIVLDVTGEE 235 (263)
T ss_pred ---------------------------EEEeCCeEEEEccccc
Confidence 9999999998754433
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=379.91 Aligned_cols=247 Identities=28% Similarity=0.392 Sum_probs=189.9
Q ss_pred hhhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCcceEEEEeEE
Q 016804 19 VSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRNVY 98 (382)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvs 98 (382)
+..++..+.... .....+..+.+|+...+..|+.....+ . +.......|+++|++
T Consensus 567 l~~pl~~l~~~~-----~~~~~a~~s~~Ri~~~L~~~~~~~~~~--------~------------~~~~~~~~I~~~~vs 621 (1495)
T PLN03232 567 LRSPLNMLPNLL-----SQVVNANVSLQRIEELLLSEERILAQN--------P------------PLQPGAPAISIKNGY 621 (1495)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCcccccccc--------C------------CcCCCCCcEEEEeeE
Confidence 344454444443 566778889999999887764211000 0 000111249999999
Q ss_pred EEeCC---eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecC
Q 016804 99 KSFGE---KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQS 175 (382)
Q Consensus 99 ~~yg~---~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~ 175 (382)
|+|++ +++|+|+||+|++||.++|+||||||||||+++|+|+++|++|.+.. + +.+|+||+|+
T Consensus 622 F~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~----~----------~~~Iayv~Q~ 687 (1495)
T PLN03232 622 FSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVV----I----------RGSVAYVPQV 687 (1495)
T ss_pred EEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEE----e----------cCcEEEEcCc
Confidence 99964 57999999999999999999999999999999999999999987631 1 1259999999
Q ss_pred CCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChHHHHHHHHHHHHhcC
Q 016804 176 AALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVALARSIIFD 244 (382)
Q Consensus 176 ~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGGqrQRVaIArAL~~~ 244 (382)
|.+|+ .||+|||.|+.. .+ ++++.++++.++|.+..+..| ..||||||||++||||+.+
T Consensus 688 p~Lf~-gTIreNI~fg~~----~~----~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~- 757 (1495)
T PLN03232 688 SWIFN-ATVRENILFGSD----FE----SERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYS- 757 (1495)
T ss_pred ccccc-ccHHHHhhcCCc----cC----HHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhc-
Confidence 99997 599999998631 23 234666778888765555444 4799999999999999997
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHH-HHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccch
Q 016804 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDL-IRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHID 323 (382)
Q Consensus 245 ~~~~a~~P~iLLLDEPtagLD~~~~~~l~~l-L~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~ 323 (382)
+|+|+|||||||+||+.+.+.+++. ++.+. ++ +|+|+|||+++.+. .||+|
T Consensus 758 ------~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l-~~----------kT~IlvTH~~~~l~-~aD~I---------- 809 (1495)
T PLN03232 758 ------NSDIYIFDDPLSALDAHVAHQVFDSCMKDEL-KG----------KTRVLVTNQLHFLP-LMDRI---------- 809 (1495)
T ss_pred ------CCCEEEEcCCccccCHHHHHHHHHHHhhhhh-cC----------CEEEEEECChhhHH-hCCEE----------
Confidence 5999999999999999999887654 55443 33 59999999998865 47766
Q ss_pred heehhccCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 324 VVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|+|+++|+.+++..
T Consensus 810 --------------------i~L~~G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 810 --------------------ILVSEGMIKEEGTFAELSK 828 (1495)
T ss_pred --------------------EEEeCCEEEEecCHHHHHh
Confidence 9999999999997777653
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=301.67 Aligned_cols=139 Identities=32% Similarity=0.481 Sum_probs=128.6
Q ss_pred EeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEec
Q 016804 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQ 174 (382)
Q Consensus 95 ~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q 174 (382)
.||+|+|+++.+++++ |+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ++|++|
T Consensus 4 ~~l~~~~~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~--------------i~~~~q 68 (177)
T cd03222 4 PDCVKRYGVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT--------------PVYKPQ 68 (177)
T ss_pred CCeEEEECCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE--------------EEEEcc
Confidence 5899999999999985 9999999999999999999999999999999999999999852 789998
Q ss_pred CCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcE
Q 016804 175 SAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEV 254 (382)
Q Consensus 175 ~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~i 254 (382)
++. ||||||||++|||||+. +|++
T Consensus 69 ~~~-------------------------------------------------LSgGq~qrv~laral~~-------~p~l 92 (177)
T cd03222 69 YID-------------------------------------------------LSGGELQRVAIAAALLR-------NATF 92 (177)
T ss_pred cCC-------------------------------------------------CCHHHHHHHHHHHHHhc-------CCCE
Confidence 643 99999999999999997 6999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 255 LLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 255 LLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+||||||++||+.++..+.+.|++++++++ .|+|++||+++++.++||++
T Consensus 93 llLDEPts~LD~~~~~~l~~~l~~~~~~~~---------~tiiivsH~~~~~~~~~d~i 142 (177)
T cd03222 93 YLFDEPSAYLDIEQRLNAARAIRRLSEEGK---------KTALVVEHDLAVLDYLSDRI 142 (177)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHHcCC---------CEEEEEECCHHHHHHhCCEE
Confidence 999999999999999999999999977642 49999999999999999988
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=304.45 Aligned_cols=223 Identities=27% Similarity=0.438 Sum_probs=192.4
Q ss_pred ceEEEEeEEEEeCCe-eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC--CCCccEEEECCEECCCCCChhhhcc
Q 016804 90 VLIDCRNVYKSFGEK-HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL--APDKGEVYIRGRKRAGLISDEEISG 166 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~-~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~--~p~sG~I~i~G~~i~~~~~~~~~~~ 166 (382)
.+|+++||+.+..++ ++|++|||+|++||+.+|+||||||||||.++|+|.- ++++|+|.++|+++..+. ..++++
T Consensus 2 ~~L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~-~~ERAr 80 (251)
T COG0396 2 MMLEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELS-PDERAR 80 (251)
T ss_pred ceeEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCC-HhHHHh
Confidence 479999999999885 9999999999999999999999999999999999995 789999999999998874 444566
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCC--HHHHHHHHHHHHHHcCCcc-cccCCCC-CCChHHHHHHHHHHHHh
Q 016804 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSKMR--DEQISELVKENLAAVGLKG-VEDRLPS-ELSGGMKKRVALARSII 242 (382)
Q Consensus 167 ~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~--~~~~~~~v~~~L~~~gL~~-~~~~~~~-~LSGGqrQRVaIArAL~ 242 (382)
..|.+-||.|.=+|..|+.+.+.......++.. ..+..+++++.++.+++.+ +++|.+. .+|||||+|..|+.+++
T Consensus 81 ~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~ 160 (251)
T COG0396 81 AGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLL 160 (251)
T ss_pred cCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHh
Confidence 679999999999999999999988764332221 2456778899999999985 8888885 69999999999999998
Q ss_pred cCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccc
Q 016804 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHI 322 (382)
Q Consensus 243 ~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~ 322 (382)
. +|++.|||||-||||..+-+.+.+.+++++.++ .++++|||.-..+..+-
T Consensus 161 l-------ePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~----------~~~liITHy~rll~~i~------------ 211 (251)
T COG0396 161 L-------EPKLAILDEPDSGLDIDALKIVAEGINALREEG----------RGVLIITHYQRLLDYIK------------ 211 (251)
T ss_pred c-------CCCEEEecCCCcCccHHHHHHHHHHHHHHhcCC----------CeEEEEecHHHHHhhcC------------
Confidence 5 799999999999999999999999999999886 59999999865544331
Q ss_pred hheehhccCCCCcccccccEEEEEeCCeEEEEeccccc
Q 016804 323 DVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEF 360 (382)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~ 360 (382)
-|++.+|.+|+|+..|.+ ++
T Consensus 212 -----------------pD~vhvl~~GrIv~sG~~-el 231 (251)
T COG0396 212 -----------------PDKVHVLYDGRIVKSGDP-EL 231 (251)
T ss_pred -----------------CCEEEEEECCEEEecCCH-HH
Confidence 156699999999999987 54
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-40 Score=373.77 Aligned_cols=218 Identities=26% Similarity=0.419 Sum_probs=186.4
Q ss_pred ceEEEEeEEEEeC-------------CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC--CccEEEECCEE
Q 016804 90 VLIDCRNVYKSFG-------------EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP--DKGEVYIRGRK 154 (382)
Q Consensus 90 ~~I~~~nvs~~yg-------------~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p--~sG~I~i~G~~ 154 (382)
..+.++||++... .+++|+|||+++++||+++|+|||||||||||++|+|+.++ .+|+|.++|.+
T Consensus 866 ~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~ 945 (1470)
T PLN03140 866 LAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP 945 (1470)
T ss_pred ceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCcc
Confidence 3599999999873 24799999999999999999999999999999999999874 78999999987
Q ss_pred CCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhHhhc--CCCCHHHHHHHHHHHHHHcCCcccccCCC-----CCC
Q 016804 155 RAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYEN--SKMRDEQISELVKENLAAVGLKGVEDRLP-----SEL 227 (382)
Q Consensus 155 i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~--~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----~~L 227 (382)
.. ... .++.+|||+|++.+++.+||+||+.|....+ ...+.++..+.++++++.+||.+..++.+ ..|
T Consensus 946 ~~----~~~-~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~L 1020 (1470)
T PLN03140 946 KK----QET-FARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGL 1020 (1470)
T ss_pred CC----hHH-hhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCc
Confidence 42 111 1235999999999999999999999875322 12344455667899999999998888886 589
Q ss_pred ChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHH-HH
Q 016804 228 SGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS-TI 306 (382)
Q Consensus 228 SGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~-~~ 306 (382)
||||||||+||++|+. +|+||+|||||+|||+.++..+++.|++++++| .|||+++|+++ .+
T Consensus 1021 SgGerkRvsIa~aL~~-------~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g----------~tVI~t~Hq~~~~i 1083 (1470)
T PLN03140 1021 STEQRKRLTIAVELVA-------NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG----------RTVVCTIHQPSIDI 1083 (1470)
T ss_pred CHHHHHHHHHHHHHhh-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCCCHHH
Confidence 9999999999999997 699999999999999999999999999998876 59999999998 57
Q ss_pred HHhhchhccccccccchheehhccCCCCcccccccEEEEEeC-CeEEEEecccc
Q 016804 307 RRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYE-GKIVWQGMTHE 359 (382)
Q Consensus 307 ~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~-G~i~~~g~~~~ 359 (382)
.+.+|++ ++|++ |+++..|++.+
T Consensus 1084 ~~~~D~v------------------------------llL~~gG~~v~~G~~~~ 1107 (1470)
T PLN03140 1084 FEAFDEL------------------------------LLMKRGGQVIYSGPLGR 1107 (1470)
T ss_pred HHhCCEE------------------------------EEEcCCCEEEEECCccc
Confidence 7888877 99986 89999997643
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=372.44 Aligned_cols=238 Identities=24% Similarity=0.332 Sum_probs=186.1
Q ss_pred hhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCcceEEEEeEEEEeCC--eeeeEeeeEE
Q 016804 36 SFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRNVYKSFGE--KHILRGVSFK 113 (382)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvs~~yg~--~~iL~~vsl~ 113 (382)
.....+..+.+|+...+..+..+..... . . .. .+ .....|+++|++++|++ +++|+|+||+
T Consensus 598 ~~~~~a~~s~~Ri~~~l~~~~~~~~~~~-------~---~----~~--~~-~~~~~i~~~~~~~~~~~~~~~~l~~isl~ 660 (1522)
T TIGR00957 598 SSIVQASVSLKRLRIFLSHEELEPDSIE-------R---R----TI--KP-GEGNSITVHNATFTWARDLPPTLNGITFS 660 (1522)
T ss_pred HHHHHHHHHHHHHHHHHcCccccccccc-------c---c----cc--CC-CCCCcEEEEEeEEEcCCCCCceeeeeEEE
Confidence 4566778889999998877643211000 0 0 00 00 11125999999999974 5799999999
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhHh
Q 016804 114 IRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLY 193 (382)
Q Consensus 114 i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~ 193 (382)
|++||+++|+||||||||||+++|+|+++|++|+|.++| +|+||+|++.+|+ .||+|||.++..
T Consensus 661 i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---------------~i~yv~Q~~~l~~-~Ti~eNI~~g~~ 724 (1522)
T TIGR00957 661 IPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG---------------SVAYVPQQAWIQN-DSLRENILFGKA 724 (1522)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC---------------EEEEEcCCccccC-CcHHHHhhcCCc
Confidence 999999999999999999999999999999999999986 3899999999986 699999998632
Q ss_pred hcCCCCHHHHHHHHHHHHHHcCCc-----------ccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCC
Q 016804 194 ENSKMRDEQISELVKENLAAVGLK-----------GVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA 262 (382)
Q Consensus 194 ~~~~~~~~~~~~~v~~~L~~~gL~-----------~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPta 262 (382)
.+++.. +++++.+++. ......+.+||||||||++|||||+. +|+++||||||+
T Consensus 725 ----~~~~~~----~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~-------~~~illLDEp~s 789 (1522)
T TIGR00957 725 ----LNEKYY----QQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYS-------NADIYLFDDPLS 789 (1522)
T ss_pred ----cCHHHH----HHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhc-------CCCEEEEcCCcc
Confidence 223222 2233333322 23456678999999999999999997 699999999999
Q ss_pred CCCHHHHHHHHHHHHHHH--HcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccCCCCcccccc
Q 016804 263 GLDPIASTVVEDLIRSVH--KKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFI 340 (382)
Q Consensus 263 gLD~~~~~~l~~lL~~l~--~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (382)
+||+.+.+.+++.+.+.. .++ +|+|+|||+++.+.. ||+|
T Consensus 790 aLD~~~~~~i~~~l~~~~~~~~~----------~tvIlvTH~~~~l~~-~D~i--------------------------- 831 (1522)
T TIGR00957 790 AVDAHVGKHIFEHVIGPEGVLKN----------KTRILVTHGISYLPQ-VDVI--------------------------- 831 (1522)
T ss_pred ccCHHHHHHHHHHHhhhhhhhcC----------CEEEEEeCChhhhhh-CCEE---------------------------
Confidence 999999999999987542 223 599999999999875 7776
Q ss_pred cEEEEEeCCeEEEEeccccccc
Q 016804 341 YRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 341 ~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|+|+++|+.+++..
T Consensus 832 ---i~l~~G~i~~~g~~~~l~~ 850 (1522)
T TIGR00957 832 ---IVMSGGKISEMGSYQELLQ 850 (1522)
T ss_pred ---EEecCCeEEeeCCHHHHHh
Confidence 9999999999998777653
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=330.00 Aligned_cols=213 Identities=32% Similarity=0.510 Sum_probs=182.0
Q ss_pred EEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 92 IDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 92 I~~~nvs~~yg-~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
+.++||+|.|. .+++|+++||+++.|+.+|++||||+||||++++|.+++++++|.|.+||+++....... .++-||
T Consensus 263 v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~s--lR~aIg 340 (497)
T COG5265 263 VAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQS--LRRAIG 340 (497)
T ss_pred EEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHH--HHHHhC
Confidence 88999999995 578999999999999999999999999999999999999999999999999987643222 233599
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChHHHHHHHHHH
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVALAR 239 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGGqrQRVaIAr 239 (382)
+|||+..||.+ |++.|+.++. +....+++..+++.+.+.++....| -.|||||||||+|||
T Consensus 341 ~VPQDtvLFND-ti~yni~ygr-------~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar 412 (497)
T COG5265 341 IVPQDTVLFND-TIAYNIKYGR-------PDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIAR 412 (497)
T ss_pred cCcccceehhh-hHHHHHhccC-------ccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHH
Confidence 99999999975 9999999853 1222344566777777777766666 379999999999999
Q ss_pred HHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccc
Q 016804 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIF 319 (382)
Q Consensus 240 AL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~ 319 (382)
++++ +|+||+|||.||+||..++++++..|+++.+. .|.++|.|+++++...
T Consensus 413 ~ilk-------~p~il~~deatsaldt~te~~iq~~l~~~~~~-----------rttlviahrlsti~~a---------- 464 (497)
T COG5265 413 TILK-------NPPILILDEATSALDTHTEQAIQAALREVSAG-----------RTTLVIAHRLSTIIDA---------- 464 (497)
T ss_pred HHhc-------CCCEEEEehhhhHhhhhHHHHHHHHHHHHhCC-----------CeEEEEeehhhhccCC----------
Confidence 9998 59999999999999999999999999999753 4899999999999874
Q ss_pred ccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccC
Q 016804 320 GHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSS 363 (382)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~ 363 (382)
|.|+||++|+|++.|+..+++..
T Consensus 465 ---------------------deiivl~~g~i~erg~h~~ll~~ 487 (497)
T COG5265 465 ---------------------DEIIVLDNGRIVERGTHEELLAA 487 (497)
T ss_pred ---------------------ceEEEeeCCEEEecCcHHHHHHc
Confidence 45599999999999965556544
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-39 Score=302.15 Aligned_cols=195 Identities=32% Similarity=0.453 Sum_probs=175.0
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEec-CCCCCCCC
Q 016804 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQ-SAALFDSL 182 (382)
Q Consensus 104 ~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q-~~~l~~~l 182 (382)
..+|+||||++++||.+||||+||||||||||+|+|.++||+|+|.++|+- +++.. ...+-|.+
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v---------------~~li~lg~Gf~pel 104 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKV---------------APLIELGAGFDPEL 104 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceE---------------ehhhhcccCCCccc
Confidence 469999999999999999999999999999999999999999999999963 11111 12234569
Q ss_pred CHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCC
Q 016804 183 TVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA 262 (382)
Q Consensus 183 TV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPta 262 (382)
|.+||+.+... ..++..+++++.++++.+..+|.++.++++.++|-||+-|+++|-|... +|+|||+||-.+
T Consensus 105 TGreNi~l~~~-~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~-------~pdILllDEvla 176 (249)
T COG1134 105 TGRENIYLRGL-ILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHV-------EPDILLLDEVLA 176 (249)
T ss_pred chHHHHHHHHH-HhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhc-------CCCEEEEehhhh
Confidence 99999988653 3457889999999999999999999999999999999999999999975 699999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccCCCCcccccccE
Q 016804 263 GLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYR 342 (382)
Q Consensus 263 gLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (382)
..|+.-++.-.+.+.++.+++ .|+|+||||++.++++|||+
T Consensus 177 vGD~~F~~K~~~rl~e~~~~~----------~tiv~VSHd~~~I~~~Cd~~----------------------------- 217 (249)
T COG1134 177 VGDAAFQEKCLERLNELVEKN----------KTIVLVSHDLGAIKQYCDRA----------------------------- 217 (249)
T ss_pred cCCHHHHHHHHHHHHHHHHcC----------CEEEEEECCHHHHHHhcCee-----------------------------
Confidence 999999999999999997775 49999999999999999988
Q ss_pred EEEEeCCeEEEEecccccc
Q 016804 343 LIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 343 ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|+|...|+++++.
T Consensus 218 -i~l~~G~i~~~G~~~~vi 235 (249)
T COG1134 218 -IWLEHGQIRMEGSPEEVI 235 (249)
T ss_pred -EEEeCCEEEEcCCHHHHH
Confidence 999999999999998875
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-40 Score=347.48 Aligned_cols=192 Identities=29% Similarity=0.433 Sum_probs=159.9
Q ss_pred EeEEEEeCCe-eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEE-----------ECCEECCCCCChh
Q 016804 95 RNVYKSFGEK-HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY-----------IRGRKRAGLISDE 162 (382)
Q Consensus 95 ~nvs~~yg~~-~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~-----------i~G~~i~~~~~~~ 162 (382)
++++++||.+ .+|++++ .+++||++||+||||||||||+|+|+|+++|++|+|. ++|+++..+....
T Consensus 77 ~~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~ 155 (590)
T PRK13409 77 EEPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKL 155 (590)
T ss_pred cCceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHH
Confidence 4499999864 6999999 8999999999999999999999999999999999998 8998764321000
Q ss_pred hhccceEEEEecC----CCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHH
Q 016804 163 EISGLRIGLVFQS----AALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALA 238 (382)
Q Consensus 163 ~~~~~~Ig~V~Q~----~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIA 238 (382)
...+.++++.+|. +.+|. .||.||+... +..+.+.++++.++|....++.+.+|||||||||+||
T Consensus 156 ~~~~~~~~~~~q~~~~~p~~~~-~tv~e~l~~~----------~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia 224 (590)
T PRK13409 156 YNGEIKVVHKPQYVDLIPKVFK-GKVRELLKKV----------DERGKLDEVVERLGLENILDRDISELSGGELQRVAIA 224 (590)
T ss_pred hccCcceeecccchhhhhhhhc-chHHHHHHhh----------hHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence 0011235555554 44444 3999998641 1234578899999999889999999999999999999
Q ss_pred HHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccc
Q 016804 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLF 316 (382)
Q Consensus 239 rAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~ 316 (382)
+||+. +|++|||||||++||+..+..+.+.|+++.+ + .|+|+||||++++..+|||++++
T Consensus 225 ~al~~-------~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g----------~tvIivsHd~~~l~~~~D~v~vl 284 (590)
T PRK13409 225 AALLR-------DADFYFFDEPTSYLDIRQRLNVARLIRELAE-G----------KYVLVVEHDLAVLDYLADNVHIA 284 (590)
T ss_pred HHHhc-------CCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-C----------CEEEEEeCCHHHHHHhCCEEEEE
Confidence 99997 6999999999999999999999999999987 6 59999999999999999998444
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-39 Score=282.87 Aligned_cols=149 Identities=44% Similarity=0.739 Sum_probs=135.2
Q ss_pred EEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEe
Q 016804 94 CRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVF 173 (382)
Q Consensus 94 ~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~ 173 (382)
++|++++|+++.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|+++|.++.... ... ...+++|+|
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~-~~~-~~~~i~~~~ 79 (157)
T cd00267 2 IENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLP-LEE-LRRRIGYVP 79 (157)
T ss_pred eEEEEEEeCCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCC-HHH-HHhceEEEe
Confidence 689999998889999999999999999999999999999999999999999999999999865321 111 123699999
Q ss_pred cCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCc
Q 016804 174 QSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPE 253 (382)
Q Consensus 174 Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~ 253 (382)
| ||+||+||++|||||+. +|+
T Consensus 80 q----------------------------------------------------lS~G~~~r~~l~~~l~~-------~~~ 100 (157)
T cd00267 80 Q----------------------------------------------------LSGGQRQRVALARALLL-------NPD 100 (157)
T ss_pred e----------------------------------------------------CCHHHHHHHHHHHHHhc-------CCC
Confidence 9 99999999999999997 699
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 254 VLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 254 iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+++|||||++||+.++..+.+.|+++.+++ .|+|++||+++++..+||++
T Consensus 101 i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~----------~tii~~sh~~~~~~~~~d~i 150 (157)
T cd00267 101 LLLLDEPTSGLDPASRERLLELLRELAEEG----------RTVIIVTHDPELAELAADRV 150 (157)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHhCCEE
Confidence 999999999999999999999999997764 49999999999999999987
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-40 Score=311.85 Aligned_cols=206 Identities=30% Similarity=0.515 Sum_probs=175.9
Q ss_pred eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEe-cCCCCCCCCC
Q 016804 105 HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVF-QSAALFDSLT 183 (382)
Q Consensus 105 ~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~-Q~~~l~~~lT 183 (382)
.+++|+||+|++|++++++|||||||||+||+|+|++.|++|.|.++|.+... ..+.. -+++++|+ |...++..+.
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~--~~~~~-~~~~~~v~gqk~ql~Wdlp 114 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFR--RREEY-LRSIGLVMGQKLQLWWDLP 114 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcch--hHHHH-HHHHHHHhhhhheeeeech
Confidence 48999999999999999999999999999999999999999999999987532 11111 12588876 4455655566
Q ss_pred HHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCC
Q 016804 184 VRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAG 263 (382)
Q Consensus 184 V~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtag 263 (382)
+.|-+..... ....+.++..++...+-+.++|+++++.+++.||-|||.|+.||.||++ +|+||+|||||-|
T Consensus 115 ~~ds~~v~~~-Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh-------~p~VLfLDEpTvg 186 (325)
T COG4586 115 ALDSLEVLKL-IYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLH-------PPKVLFLDEPTVG 186 (325)
T ss_pred hhhhHHHHHH-HHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcC-------CCcEEEecCCccC
Confidence 6666654322 2236778889999999999999999999999999999999999999997 6999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccCCCCcccccccEE
Q 016804 264 LDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRL 343 (382)
Q Consensus 264 LD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 343 (382)
||..++..+.+.+++.+++.. +||+++||+++.+..+||||
T Consensus 187 LDV~aq~~ir~Flke~n~~~~---------aTVllTTH~~~di~~lc~rv------------------------------ 227 (325)
T COG4586 187 LDVNAQANIREFLKEYNEERQ---------ATVLLTTHIFDDIATLCDRV------------------------------ 227 (325)
T ss_pred cchhHHHHHHHHHHHHHHhhC---------ceEEEEecchhhHHHhhhhe------------------------------
Confidence 999999999999999987642 69999999999999999998
Q ss_pred EEEeCCeEEEEeccccc
Q 016804 344 IFLYEGKIVWQGMTHEF 360 (382)
Q Consensus 344 i~l~~G~i~~~g~~~~~ 360 (382)
+.|+.|+++..|+..++
T Consensus 228 ~~I~~Gqlv~dg~l~~l 244 (325)
T COG4586 228 LLIDQGQLVFDGTLAQL 244 (325)
T ss_pred EEeeCCcEeecccHHHH
Confidence 99999999998876654
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-39 Score=334.84 Aligned_cols=208 Identities=34% Similarity=0.532 Sum_probs=177.9
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
.+|+++|++++||++++|+++||+|.+|+.+||||+||||||||||+|+|...|++|+|...+. .+|
T Consensus 2 ~~i~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-------------~~v 68 (530)
T COG0488 2 SMITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-------------LRV 68 (530)
T ss_pred ceEEEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-------------ceE
Confidence 4699999999999999999999999999999999999999999999999999999999998752 269
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCC-----------------------------CHHHHHHHHHHHHHHcCCcccc
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKM-----------------------------RDEQISELVKENLAAVGLKGVE 220 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~-----------------------------~~~~~~~~v~~~L~~~gL~~~~ 220 (382)
||+.|++.+.+..||.+.+..+....... ..-..+.++..++..+|+.+.
T Consensus 69 ~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~- 147 (530)
T COG0488 69 GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE- 147 (530)
T ss_pred EEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-
Confidence 99999999999889999887654211000 001123456778888899877
Q ss_pred cCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEc
Q 016804 221 DRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVT 300 (382)
Q Consensus 221 ~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivT 300 (382)
+++.++||||||.||+||+||+. +|++|||||||++||..+...+.+.|.++ .| |+|+||
T Consensus 148 ~~~~~~LSGG~r~Rv~LA~aL~~-------~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-----------tviiVS 207 (530)
T COG0488 148 DRPVSSLSGGWRRRVALARALLE-------EPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-----------TVIVVS 207 (530)
T ss_pred cCchhhcCHHHHHHHHHHHHHhc-------CCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-----------cEEEEe
Confidence 99999999999999999999997 69999999999999999999999999865 33 899999
Q ss_pred cCHHHHHHhhchhccccccccchheehhccCCCCcccccccEEEEEeCCeEE-EEecccccc
Q 016804 301 HQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIV-WQGMTHEFT 361 (382)
Q Consensus 301 Hdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~-~~g~~~~~~ 361 (382)
||-+++.++|++| +.++.|++. +.|.-+.+.
T Consensus 208 HDR~FLd~V~t~I------------------------------~~ld~g~l~~y~Gny~~~~ 239 (530)
T COG0488 208 HDRYFLDNVATHI------------------------------LELDRGKLTPYKGNYSSYL 239 (530)
T ss_pred CCHHHHHHHhhhe------------------------------EEecCCceeEecCCHHHHH
Confidence 9999999999988 999999874 556555554
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-39 Score=365.20 Aligned_cols=208 Identities=23% Similarity=0.290 Sum_probs=175.6
Q ss_pred CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC----CCCccEEEECCEECCCCCChhhhccceEEEEecCCCC
Q 016804 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL----APDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAAL 178 (382)
Q Consensus 103 ~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~----~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l 178 (382)
.+++|+|||+++++||+++|+||||||||||||+|+|+. +|++|+|.++|+++.... ...+..++||+|+..+
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~---~~~r~~i~yv~Q~d~~ 149 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK---KHYRGDVVYNAETDVH 149 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH---hhcCceeEEecccccc
Confidence 467999999999999999999999999999999999996 579999999999864211 1123359999999999
Q ss_pred CCCCCHHHHHHhhHhhcC------CCCHHHHHHH-HHHHHHHcCCcccccCC-----CCCCChHHHHHHHHHHHHhcCCC
Q 016804 179 FDSLTVRENVGFLLYENS------KMRDEQISEL-VKENLAAVGLKGVEDRL-----PSELSGGMKKRVALARSIIFDNT 246 (382)
Q Consensus 179 ~~~lTV~eni~~~~~~~~------~~~~~~~~~~-v~~~L~~~gL~~~~~~~-----~~~LSGGqrQRVaIArAL~~~~~ 246 (382)
++.+||+||+.|....+. ...+++..++ ++++++.+||++..+++ ++.|||||||||+||+||+.
T Consensus 150 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~--- 226 (1394)
T TIGR00956 150 FPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLG--- 226 (1394)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHh---
Confidence 999999999999764321 1233333333 46689999998776654 57899999999999999997
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCH-HHHHHhhchhccccccccchh
Q 016804 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQH-STIRRAVDRLCLFQIFGHIDV 324 (382)
Q Consensus 247 ~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl-~~~~~~aDrv~~~~~~~~~~~ 324 (382)
+|+|++|||||+|||+.++..+.+.|++++++ | .|+|+++|+. +++.+++|++
T Consensus 227 ----~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g----------~tvii~~Hq~~~~i~~l~D~v----------- 281 (1394)
T TIGR00956 227 ----GAKIQCWDNATRGLDSATALEFIRALKTSANILD----------TTPLVAIYQCSQDAYELFDKV----------- 281 (1394)
T ss_pred ----CCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcC----------CEEEEEecCCCHHHHHhhceE-----------
Confidence 69999999999999999999999999999875 5 5999999996 7888999888
Q ss_pred eehhccCCCCcccccccEEEEEeCCeEEEEeccccc
Q 016804 325 VIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEF 360 (382)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~ 360 (382)
++|++|++++.|+++++
T Consensus 282 -------------------~~L~~G~iv~~G~~~~~ 298 (1394)
T TIGR00956 282 -------------------IVLYEGYQIYFGPADKA 298 (1394)
T ss_pred -------------------EEEeCCeEEEECCHHHH
Confidence 99999999999988764
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-38 Score=360.91 Aligned_cols=197 Identities=25% Similarity=0.441 Sum_probs=161.6
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
++++|+++. .+++|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.++| +|+|
T Consensus 429 ~~~~~~s~~--~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g---------------~iay 491 (1490)
T TIGR01271 429 LFFSNFSLY--VTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG---------------RISF 491 (1490)
T ss_pred ccccccccc--cCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC---------------EEEE
Confidence 556666654 35799999999999999999999999999999999999999999999987 3899
Q ss_pred EecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc-----------cccCCCCCCChHHHHHHHHHHH
Q 016804 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-----------VEDRLPSELSGGMKKRVALARS 240 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~-----------~~~~~~~~LSGGqrQRVaIArA 240 (382)
++|++.+|+. ||+|||.|+.. .+.+. ..++++.++|.+ .....+.+|||||||||+||||
T Consensus 492 v~Q~~~l~~~-Ti~eNI~~g~~----~~~~~----~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARA 562 (1490)
T TIGR01271 492 SPQTSWIMPG-TIKDNIIFGLS----YDEYR----YTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARA 562 (1490)
T ss_pred EeCCCccCCc-cHHHHHHhccc----cchHH----HHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHH
Confidence 9999999985 99999998642 12211 222233333321 2345578999999999999999
Q ss_pred HhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHH-HHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccc
Q 016804 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDL-IRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIF 319 (382)
Q Consensus 241 L~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~l-L~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~ 319 (382)
|+. +|+++||||||++||+..+..+++. +.++.+ + +|+|+|||+++.+.. ||||
T Consensus 563 l~~-------~~~illLDep~saLD~~~~~~i~~~~l~~~~~-~----------~tvilvtH~~~~~~~-ad~i------ 617 (1490)
T TIGR01271 563 VYK-------DADLYLLDSPFTHLDVVTEKEIFESCLCKLMS-N----------KTRILVTSKLEHLKK-ADKI------ 617 (1490)
T ss_pred HHc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc-C----------CeEEEEeCChHHHHh-CCEE------
Confidence 997 5999999999999999999999984 666643 4 599999999999865 8877
Q ss_pred ccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccC
Q 016804 320 GHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSS 363 (382)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~ 363 (382)
++|++|+|++.|+.+++...
T Consensus 618 ------------------------i~l~~g~i~~~g~~~~l~~~ 637 (1490)
T TIGR01271 618 ------------------------LLLHEGVCYFYGTFSELQAK 637 (1490)
T ss_pred ------------------------EEEECCEEEEEcCHHHHHhc
Confidence 99999999999988877644
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-39 Score=281.68 Aligned_cols=194 Identities=34% Similarity=0.522 Sum_probs=169.7
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC---ccEEEECCEECCCCCChhhhccc
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD---KGEVYIRGRKRAGLISDEEISGL 167 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~---sG~I~i~G~~i~~~~~~~~~~~~ 167 (382)
++.++||+.+.++...|.++||+|.+||++.|+||||||||||+.-+.|.+.++ +|+++++++++..+.. .++
T Consensus 2 ~l~l~nvsl~l~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa----~qR 77 (213)
T COG4136 2 MLCLKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPA----AQR 77 (213)
T ss_pred ceeeeeeeecCCCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccch----hhh
Confidence 578999999999999999999999999999999999999999999999999985 8999999999865422 234
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 016804 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (382)
Q Consensus 168 ~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~ 247 (382)
+||++||++.|||+++|.+|+.|.+... ..-+..++.+..+|++.||.+..++.|.+||||||-||++-|+|+.
T Consensus 78 q~GiLFQD~lLFphlsVg~Nl~fAlp~~--~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla---- 151 (213)
T COG4136 78 QIGILFQDALLFPHLSVGQNLLFALPAT--LKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLA---- 151 (213)
T ss_pred heeeeecccccccccccccceEEecCcc--cccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHh----
Confidence 7999999999999999999999976322 2223445667889999999999999999999999999999999996
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHH-HHHcCCCCCCCCCCceEEEEEccCHHHHH
Q 016804 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRS-VHKKGENGLANPGNIASYVVVTHQHSTIR 307 (382)
Q Consensus 248 ~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~-l~~~g~~~~~~~~~~~tiIivTHdl~~~~ 307 (382)
+|+.++||||+|.||...+.++.+..-. +...| ...|+||||+..+.
T Consensus 152 ---~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~ag----------iPtv~VTHD~~Dvp 199 (213)
T COG4136 152 ---QPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAG----------IPTVQVTHDLQDVP 199 (213)
T ss_pred ---CcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcC----------CCeEEEecccccCC
Confidence 7999999999999999999999987554 44445 57899999998876
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-38 Score=286.59 Aligned_cols=149 Identities=25% Similarity=0.316 Sum_probs=128.4
Q ss_pred CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCC
Q 016804 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSL 182 (382)
Q Consensus 103 ~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~l 182 (382)
.+++|+|+||+|++|++++|+||||||||||||+|. +++|+|.++|... . . .+.+++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~~-~----~--~~~~~~~~~q-------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFLP-K----F--SRNKLIFIDQ-------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCccc-c----c--ccccEEEEhH--------
Confidence 367999999999999999999999999999999996 3799999987631 1 1 1224788887
Q ss_pred CHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc-cccCCCCCCChHHHHHHHHHHHHhcCCCCCCCC--CcEEEEeC
Q 016804 183 TVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALARSIIFDNTKESVE--PEVLLYDE 259 (382)
Q Consensus 183 TV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~-~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~--P~iLLLDE 259 (382)
.++++.++|.. ..++++.+||||||||++|||||+. + |++|||||
T Consensus 68 -------------------------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~-------~~~p~llLlDE 115 (176)
T cd03238 68 -------------------------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFS-------EPPGTLFILDE 115 (176)
T ss_pred -------------------------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhh-------CCCCCEEEEeC
Confidence 23578889876 4789999999999999999999996 7 99999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 260 PTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 260 PtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
||++||+.++..+.+.|+++++.| .|||++||+++++ +.|||+
T Consensus 116 Pt~~LD~~~~~~l~~~l~~~~~~g----------~tvIivSH~~~~~-~~~d~i 158 (176)
T cd03238 116 PSTGLHQQDINQLLEVIKGLIDLG----------NTVILIEHNLDVL-SSADWI 158 (176)
T ss_pred CcccCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHH-HhCCEE
Confidence 999999999999999999997665 5999999999987 468877
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=360.69 Aligned_cols=206 Identities=25% Similarity=0.370 Sum_probs=174.1
Q ss_pred CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC---ccEEEECCEECCCCCChhhhccceEEEEecCCCCC
Q 016804 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD---KGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALF 179 (382)
Q Consensus 103 ~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~---sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~ 179 (382)
.+++|+|||+.|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++.... .+..++||+|+..++
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~-----~~~~i~yv~Q~d~~~ 251 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV-----PRKTSAYISQNDVHV 251 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc-----ccceeEEecccccCC
Confidence 366999999999999999999999999999999999999998 999999999864321 133699999999999
Q ss_pred CCCCHHHHHHhhHhhcCC---------CCHHHH------------------------HHHHHHHHHHcCCcccc-----c
Q 016804 180 DSLTVRENVGFLLYENSK---------MRDEQI------------------------SELVKENLAAVGLKGVE-----D 221 (382)
Q Consensus 180 ~~lTV~eni~~~~~~~~~---------~~~~~~------------------------~~~v~~~L~~~gL~~~~-----~ 221 (382)
+.+||+||+.|....... ..+++. ...++++++.+||++.. +
T Consensus 252 ~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~ 331 (1470)
T PLN03140 252 GVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGD 331 (1470)
T ss_pred CcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCC
Confidence 999999999997642210 011110 11356789999998654 5
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEc
Q 016804 222 RLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVT 300 (382)
Q Consensus 222 ~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivT 300 (382)
+.++.|||||||||+||++|+. +|++|+|||||+|||+.+..++.+.|++++++ | .|+|+++
T Consensus 332 ~~~rglSGGerkRVsia~aL~~-------~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g----------~Tviis~ 394 (1470)
T PLN03140 332 EMIRGISGGQKKRVTTGEMIVG-------PTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTE----------ATVLMSL 394 (1470)
T ss_pred ccccCCCcccceeeeehhhhcC-------CCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcC----------CEEEEEe
Confidence 6778999999999999999997 69999999999999999999999999999764 4 5999999
Q ss_pred cCH-HHHHHhhchhccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEeccccc
Q 016804 301 HQH-STIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEF 360 (382)
Q Consensus 301 Hdl-~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~ 360 (382)
|+. .++.+++|+| ++|++|+++.+|+.+++
T Consensus 395 Hqp~~~i~~lfD~v------------------------------ilL~~G~ivy~G~~~~~ 425 (1470)
T PLN03140 395 LQPAPETFDLFDDI------------------------------ILLSEGQIVYQGPRDHI 425 (1470)
T ss_pred cCCCHHHHHHhheE------------------------------EEeeCceEEEeCCHHHH
Confidence 986 6888899887 99999999999987764
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-38 Score=339.33 Aligned_cols=221 Identities=24% Similarity=0.308 Sum_probs=167.9
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC---CCCccEEEECCEECCCCC-Ch---
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL---APDKGEVYIRGRKRAGLI-SD--- 161 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~---~p~sG~I~i~G~~i~~~~-~~--- 161 (382)
..+|+++|++|+|+++.+|+|+||+|.+|+++|||||||||||||||+|+|.. .|++|+|.+.++++.... ..
T Consensus 175 ~~~I~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~ 254 (718)
T PLN03073 175 IKDIHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQC 254 (718)
T ss_pred ceeEEEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHH
Confidence 45799999999999888999999999999999999999999999999999964 588999987665432111 00
Q ss_pred -----hhh---ccceEEEEecCCCCCCCCCHHHHHHhh-----------------HhhcCCCCHHHHHHHHHHHHHHcCC
Q 016804 162 -----EEI---SGLRIGLVFQSAALFDSLTVRENVGFL-----------------LYENSKMRDEQISELVKENLAAVGL 216 (382)
Q Consensus 162 -----~~~---~~~~Ig~V~Q~~~l~~~lTV~eni~~~-----------------~~~~~~~~~~~~~~~v~~~L~~~gL 216 (382)
.+. .+..++|++|++.+... ++.+|.... +...........++++.++|+.+|+
T Consensus 255 v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl 333 (718)
T PLN03073 255 VLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSF 333 (718)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCC
Confidence 000 01136788887654221 222221110 0000001111345567788889999
Q ss_pred c-ccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceE
Q 016804 217 K-GVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIAS 295 (382)
Q Consensus 217 ~-~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~t 295 (382)
. +..++++.+|||||||||+|||||+. +|++|||||||++||+.++..+.+.|+++ + .|
T Consensus 334 ~~~~~~~~~~~LSgG~k~rv~LA~aL~~-------~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~----------~t 393 (718)
T PLN03073 334 TPEMQVKATKTFSGGWRMRIALARALFI-------EPDLLLLDEPTNHLDLHAVLWLETYLLKW---P----------KT 393 (718)
T ss_pred ChHHHhCchhhCCHHHHHHHHHHHHHhc-------CCCEEEEECCCCCCCHHHHHHHHHHHHHc---C----------CE
Confidence 6 56788999999999999999999997 69999999999999999999999999886 3 39
Q ss_pred EEEEccCHHHHHHhhchhccccccccchheehhccCCCCcccccccEEEEEeCCeEE-EEeccccc
Q 016804 296 YVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIV-WQGMTHEF 360 (382)
Q Consensus 296 iIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~-~~g~~~~~ 360 (382)
+|+||||++++..+||++ ++|++|++. +.|+..++
T Consensus 394 viivsHd~~~l~~~~d~i------------------------------~~l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 394 FIVVSHAREFLNTVVTDI------------------------------LHLHGQKLVTYKGDYDTF 429 (718)
T ss_pred EEEEECCHHHHHHhCCEE------------------------------EEEECCEEEEeCCCHHHH
Confidence 999999999999999988 999999996 56655544
|
|
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=343.59 Aligned_cols=222 Identities=29% Similarity=0.484 Sum_probs=202.0
Q ss_pred ceEEEEeEEEEeCCee-eeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 90 VLIDCRNVYKSFGEKH-ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~-iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
..+.++|++|.|+.+. +++++||.|++||+.|+.|||||||||++|+|.|..+|++|+++++|.++.... +.+..+..
T Consensus 563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~-~~~~~~~~ 641 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVST-DFQQVRKQ 641 (885)
T ss_pred ceEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCcccccc-chhhhhhh
Confidence 4688999999999877 999999999999999999999999999999999999999999999999876432 22223346
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~ 248 (382)
+||+||...+++.+|.+|.+.+..+ .++..+.++.+.++.+++.++|.+..+++.+.+|||+|+|+++|.||+.
T Consensus 642 iGyCPQ~d~l~~~lT~rEhL~~~ar-lrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig----- 715 (885)
T KOG0059|consen 642 LGYCPQFDALWEELTGREHLEFYAR-LRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIG----- 715 (885)
T ss_pred cccCCchhhhhhhccHHHHHHHHHH-HcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhc-----
Confidence 9999999999999999999998764 4567777888889999999999999999999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehh
Q 016804 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIIL 328 (382)
Q Consensus 249 a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~ 328 (382)
+|++++|||||+|+||.+++.+++++.+++++| +.+|++||.|++++.+|||+
T Consensus 716 --~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g----------~aiiLTSHsMeE~EaLCtR~--------------- 768 (885)
T KOG0059|consen 716 --DPSVILLDEPSTGLDPKARRHLWDIIARLRKNG----------KAIILTSHSMEEAEALCTRT--------------- 768 (885)
T ss_pred --CCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcC----------CEEEEEcCCHHHHHHHhhhh---------------
Confidence 699999999999999999999999999999876 38999999999999999999
Q ss_pred ccCCCCcccccccEEEEEeCCeEEEEeccccc
Q 016804 329 GAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEF 360 (382)
Q Consensus 329 ~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~ 360 (382)
..|.+|++..-|++.++
T Consensus 769 ---------------aImv~G~l~ciGs~q~L 785 (885)
T KOG0059|consen 769 ---------------AIMVIGQLRCIGSPQEL 785 (885)
T ss_pred ---------------heeecCeeEEecChHHH
Confidence 88999999999988765
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=345.87 Aligned_cols=220 Identities=28% Similarity=0.512 Sum_probs=188.3
Q ss_pred CCcceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhh
Q 016804 87 DGDVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEI 164 (382)
Q Consensus 87 ~~~~~I~~~nvs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~ 164 (382)
.++ |+++|++.+|.. ..+|+||||+|++||.+||||+.|||||||+++|-++..|.+|+|.|||.|+.... -.++
T Consensus 1136 ~G~--I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~ig-L~dL 1212 (1381)
T KOG0054|consen 1136 KGE--IEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIG-LHDL 1212 (1381)
T ss_pred CCe--EEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeeccccc-HHHH
Confidence 444 999999999965 47999999999999999999999999999999999999999999999999998753 3333
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChHHHH
Q 016804 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKK 233 (382)
Q Consensus 165 ~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGGqrQ 233 (382)
|.+++.+||+|.||.+ |++.|+.= . ...+ ++++-++|++++|.+...+.| .++|-||||
T Consensus 1213 -RsrlsIIPQdPvLFsG-TvR~NLDP-f---~e~s----D~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQ 1282 (1381)
T KOG0054|consen 1213 -RSRLSIIPQDPVLFSG-TVRFNLDP-F---DEYS----DDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQ 1282 (1381)
T ss_pred -HhcCeeeCCCCceecC-ccccccCc-c---cccC----HHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHH
Confidence 3379999999999985 99999942 1 1122 344677888888876665555 689999999
Q ss_pred HHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 234 RVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 234 RVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
.++|||||++ +++||+|||+||++|+++-..+++.|++--++ .|||.|.|+++++.+. |||
T Consensus 1283 LlCLARALLr-------~skILvLDEATAsVD~~TD~lIQ~tIR~~F~d-----------cTVltIAHRl~TVmd~-DrV 1343 (1381)
T KOG0054|consen 1283 LLCLARALLR-------KSKILVLDEATASVDPETDALIQKTIREEFKD-----------CTVLTIAHRLNTVMDS-DRV 1343 (1381)
T ss_pred HHHHHHHHhc-------cCCEEEEecccccCChHHHHHHHHHHHHHhcC-----------CeEEEEeeccchhhhc-CeE
Confidence 9999999997 69999999999999999999999999997665 5999999999999984 555
Q ss_pred ccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHH
Q 016804 314 CLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIV 368 (382)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~ 368 (382)
+||++|+|+|.|+|.++++..+...
T Consensus 1344 ------------------------------lVld~G~v~EfdsP~~Ll~~~~S~f 1368 (1381)
T KOG0054|consen 1344 ------------------------------LVLDAGRVVEFDSPAELLSDKDSLF 1368 (1381)
T ss_pred ------------------------------EEeeCCeEeecCChHHHHhCCcchH
Confidence 9999999999999999886554443
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-37 Score=324.45 Aligned_cols=218 Identities=37% Similarity=0.573 Sum_probs=190.3
Q ss_pred ceEEEEeEEEEeCC-----eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC---CccEEEECCEECCCCCCh
Q 016804 90 VLIDCRNVYKSFGE-----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP---DKGEVYIRGRKRAGLISD 161 (382)
Q Consensus 90 ~~I~~~nvs~~yg~-----~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p---~sG~I~i~G~~i~~~~~~ 161 (382)
..++++|++....+ +++|+|||.++++||+.||+|||||||||||++|+|.... .+|+|++||+... ..
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~---~~ 100 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRD---SR 100 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCc---hh
Confidence 34788898888743 6799999999999999999999999999999999999975 6899999996532 11
Q ss_pred hhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcC--CCCHHHHHHHHHHHHHHcCCcccccCCCC-----CCChHHHHH
Q 016804 162 EEISGLRIGLVFQSAALFDSLTVRENVGFLLYENS--KMRDEQISELVKENLAAVGLKGVEDRLPS-----ELSGGMKKR 234 (382)
Q Consensus 162 ~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~--~~~~~~~~~~v~~~L~~~gL~~~~~~~~~-----~LSGGqrQR 234 (382)
..+...|||.|+..+++.+||+|++.|....+- ..+.++.+++|+++++.+||....|..++ .+|||||||
T Consensus 101 --~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkR 178 (613)
T KOG0061|consen 101 --SFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKR 178 (613)
T ss_pred --hhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhH
Confidence 123369999999999999999999999764432 24678889999999999999988888885 599999999
Q ss_pred HHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCH-HHHHHhhchh
Q 016804 235 VALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQH-STIRRAVDRL 313 (382)
Q Consensus 235 VaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl-~~~~~~aDrv 313 (382)
|+||.-|+. +|.||+|||||+|||..+..++.+.|++++++| +|||++-|+. ..+.++-|++
T Consensus 179 vsia~Ell~-------~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~g----------rtVi~tIHQPss~lf~lFD~l 241 (613)
T KOG0061|consen 179 VSIALELLT-------DPSILFLDEPTSGLDSFSALQVVQLLKRLARSG----------RTVICTIHQPSSELFELFDKL 241 (613)
T ss_pred HHHHHHHHc-------CCCEEEecCCCCCcchhhHHHHHHHHHHHHhCC----------CEEEEEEeCCcHHHHHHHhHh
Confidence 999999997 599999999999999999999999999999987 5999999987 5667777777
Q ss_pred ccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccc
Q 016804 314 CLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHE 359 (382)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~ 359 (382)
++|.+|+++..|++.+
T Consensus 242 ------------------------------~lLs~G~~vy~G~~~~ 257 (613)
T KOG0061|consen 242 ------------------------------LLLSEGEVVYSGSPRE 257 (613)
T ss_pred ------------------------------hhhcCCcEEEecCHHH
Confidence 9999999999998865
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=349.69 Aligned_cols=194 Identities=28% Similarity=0.444 Sum_probs=157.4
Q ss_pred EeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCC
Q 016804 100 SFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALF 179 (382)
Q Consensus 100 ~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~ 179 (382)
.++++++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+.+ +|||++|++.+|
T Consensus 669 ~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~---------------~i~yv~Q~~~l~ 733 (1560)
T PTZ00243 669 ELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAER---------------SIAYVPQQAWIM 733 (1560)
T ss_pred ccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC---------------eEEEEeCCCccC
Confidence 34556799999999999999999999999999999999999999999998631 599999999998
Q ss_pred CCCCHHHHHHhhHhhcCCCCHHHHHH-----HHHHHHHHc--CCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCC
Q 016804 180 DSLTVRENVGFLLYENSKMRDEQISE-----LVKENLAAV--GLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEP 252 (382)
Q Consensus 180 ~~lTV~eni~~~~~~~~~~~~~~~~~-----~v~~~L~~~--gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P 252 (382)
+ .||+|||.++.. .+.+...+ .+.+.++.+ |+....++++.+|||||||||+|||||+. +|
T Consensus 734 ~-~Tv~enI~~~~~----~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~-------~p 801 (1560)
T PTZ00243 734 N-ATVRGNILFFDE----EDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYA-------NR 801 (1560)
T ss_pred C-CcHHHHHHcCCh----hhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhc-------CC
Confidence 6 699999988531 11111111 122334444 66666678899999999999999999997 69
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHH-HHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccC
Q 016804 253 EVLLYDEPTAGLDPIASTVVEDLI-RSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAV 331 (382)
Q Consensus 253 ~iLLLDEPtagLD~~~~~~l~~lL-~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~ 331 (382)
+++||||||++||+.....+++.+ .... ++ +|+|++||+++.+. .||+|
T Consensus 802 ~illLDEP~saLD~~~~~~i~~~~~~~~~-~~----------~TvIlvTH~~~~~~-~ad~i------------------ 851 (1560)
T PTZ00243 802 DVYLLDDPLSALDAHVGERVVEECFLGAL-AG----------KTRVLATHQVHVVP-RADYV------------------ 851 (1560)
T ss_pred CEEEEcCccccCCHHHHHHHHHHHHHHhh-CC----------CEEEEEeCCHHHHH-hCCEE------------------
Confidence 999999999999999988887643 3322 34 59999999999985 57777
Q ss_pred CCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 332 APDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 332 ~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|+++++|+.+++..
T Consensus 852 ------------i~l~~G~i~~~G~~~~l~~ 870 (1560)
T PTZ00243 852 ------------VALGDGRVEFSGSSADFMR 870 (1560)
T ss_pred ------------EEEECCEEEEecCHHHHHh
Confidence 9999999999998877653
|
|
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=279.72 Aligned_cols=192 Identities=32% Similarity=0.494 Sum_probs=166.0
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
+++.+|++...+++.++.++||++.+||++-|.||||||||||||+|+||.+|++|+|+++|..+.... +. ....+-
T Consensus 2 ~L~a~~L~~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~-~~--~~~~l~ 78 (209)
T COG4133 2 MLEAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR-ES--YHQALL 78 (209)
T ss_pred cchhhhhhhccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccch-hh--HHHHHH
Confidence 578899999999999999999999999999999999999999999999999999999999998765421 11 112467
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
|+--.+.+=+.+|++||+.|....+...+ ...+.++++.+||.++.|.++.+||-|||+||||||-++.
T Consensus 79 yLGH~~giK~eLTa~ENL~F~~~~~~~~~----~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls------- 147 (209)
T COG4133 79 YLGHQPGIKTELTALENLHFWQRFHGSGN----AATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLS------- 147 (209)
T ss_pred HhhccccccchhhHHHHHHHHHHHhCCCc----hhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcC-------
Confidence 88888888889999999999765443222 2346789999999999999999999999999999999996
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHH
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTI 306 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~ 306 (382)
.+++.||||||++||......+-.++.+-..+|+ .||.+||+.--+
T Consensus 148 ~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GG----------iVllttHq~l~~ 193 (209)
T COG4133 148 PAPLWILDEPFTALDKEGVALLTALMAAHAAQGG----------IVLLTTHQPLPI 193 (209)
T ss_pred CCCceeecCcccccCHHHHHHHHHHHHHHhcCCC----------EEEEecCCccCC
Confidence 6999999999999999999999999999877763 799999986444
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=284.44 Aligned_cols=198 Identities=29% Similarity=0.355 Sum_probs=140.8
Q ss_pred eCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHH-HHHHcCCCCCccEEEECC-------EECCCCC-Ch-hhhccceEE
Q 016804 101 FGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTIL-KIIAGLLAPDKGEVYIRG-------RKRAGLI-SD-EEISGLRIG 170 (382)
Q Consensus 101 yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLL-klI~Gl~~p~sG~I~i~G-------~~i~~~~-~~-~~~~~~~Ig 170 (382)
..+.++|++|||+|++||++||+||||||||||+ ..|. .+|++.+.. ....... .. ........+
T Consensus 5 ~~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (226)
T cd03270 5 GAREHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY-----AEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPA 79 (226)
T ss_pred cchhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH-----HHHHHHHhhcccchhhhhhcccCccccccccCCCce
Confidence 3456799999999999999999999999999995 4443 234433210 0000000 00 011112345
Q ss_pred EEecCCC--CCCCCCHHH---HHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc-cccCCCCCCChHHHHHHHHHHHHhcC
Q 016804 171 LVFQSAA--LFDSLTVRE---NVGFLLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALARSIIFD 244 (382)
Q Consensus 171 ~V~Q~~~--l~~~lTV~e---ni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~-~~~~~~~~LSGGqrQRVaIArAL~~~ 244 (382)
+..|++. +.+..+|.. ...+.... .......++ .++++.+++.+ ..++++.+|||||||||+|||||+.
T Consensus 80 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~~~~~~~-~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~- 154 (226)
T cd03270 80 IAIDQKTTSRNPRSTVGTVTEIYDYLRLL---FARVGIRER-LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGS- 154 (226)
T ss_pred EEecCCCCCCCCCccHHHHHHHHHHHHHH---hhhhhHHHH-HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHh-
Confidence 5555543 344445543 22221100 112222333 56899999986 5899999999999999999999997
Q ss_pred CCCCCCCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccc
Q 016804 245 NTKESVEP--EVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHI 322 (382)
Q Consensus 245 ~~~~a~~P--~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~ 322 (382)
+| ++|||||||++||+..+..+.+.|++++++| .|+|++|||++++ .+|||+
T Consensus 155 ------~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g----------~tii~itH~~~~~-~~~d~i--------- 208 (226)
T cd03270 155 ------GLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLG----------NTVLVVEHDEDTI-RAADHV--------- 208 (226)
T ss_pred ------CCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCC----------CEEEEEEeCHHHH-HhCCEE---------
Confidence 46 6999999999999999999999999997766 5999999999987 488877
Q ss_pred hheehhccCCCCcccccccEEEEE------eCCeEEEEe
Q 016804 323 DVVIILGAVAPDKEVFFIYRLIFL------YEGKIVWQG 355 (382)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~ii~l------~~G~i~~~g 355 (382)
++| ++|+|+++|
T Consensus 209 ---------------------~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 209 ---------------------IDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred ---------------------EEeCCCccccCCEEEecC
Confidence 899 999999876
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=309.48 Aligned_cols=187 Identities=31% Similarity=0.510 Sum_probs=164.4
Q ss_pred CCcceEEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhc
Q 016804 87 DGDVLIDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165 (382)
Q Consensus 87 ~~~~~I~~~nvs~~yg~-~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~ 165 (382)
.+..+++++|+++.|++ +.+++++||.|.+|+.+|||||||+|||||||+|+|...|.+|+|.+.-.
T Consensus 317 ~g~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~------------ 384 (530)
T COG0488 317 LGKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET------------ 384 (530)
T ss_pred CCCeeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc------------
Confidence 45678999999999965 68999999999999999999999999999999999999999999998531
Q ss_pred cceEEEEecCC-CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHHHHHHhc
Q 016804 166 GLRIGLVFQSA-ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSIIF 243 (382)
Q Consensus 166 ~~~Ig~V~Q~~-~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaIArAL~~ 243 (382)
.+|||..|+. .+++..|+.|++.-.. ... .+..++..|..+++. +...+++..||||||-|+.||+.++.
T Consensus 385 -v~igyf~Q~~~~l~~~~t~~d~l~~~~---~~~----~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~ 456 (530)
T COG0488 385 -VKIGYFDQHRDELDPDKTVLEELSEGF---PDG----DEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQ 456 (530)
T ss_pred -eEEEEEEehhhhcCccCcHHHHHHhhC---ccc----cHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhcc
Confidence 2699999997 4567789999986532 111 155688999999997 46688999999999999999999997
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 244 ~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|.+|||||||++||..+...+.+.|.++ +| |+|+||||..++.++|+++
T Consensus 457 -------~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~G-----------tvl~VSHDr~Fl~~va~~i 506 (530)
T COG0488 457 -------PPNLLLLDEPTNHLDIESLEALEEALLDF--EG-----------TVLLVSHDRYFLDRVATRI 506 (530)
T ss_pred -------CCCEEEEcCCCccCCHHHHHHHHHHHHhC--CC-----------eEEEEeCCHHHHHhhcceE
Confidence 69999999999999999999999999887 34 9999999999999999988
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=322.57 Aligned_cols=237 Identities=28% Similarity=0.416 Sum_probs=193.5
Q ss_pred hhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCcceEEEEeEEEEeCC---eeeeEeeeE
Q 016804 36 SFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRNVYKSFGE---KHILRGVSF 112 (382)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvs~~yg~---~~iL~~vsl 112 (382)
+....+..+.+|+......+..+...... .+..+.+..++++|.+++.+. .+.|+||||
T Consensus 481 ~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~------------------~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~ 542 (1381)
T KOG0054|consen 481 SQLVQAKVSLKRLKEFLLSEELDPDSVER------------------SPDEAGENAIEIKNGSFSWDSESPEPTLKDINF 542 (1381)
T ss_pred HHHHHHHHHHHHHHHHhcCcccCcccccc------------------CCCCCCCceEEEeeeeEecCCCCCcccccceeE
Confidence 45566788999999999988654433311 122344556999999999864 348999999
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhH
Q 016804 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLL 192 (382)
Q Consensus 113 ~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~ 192 (382)
+|++|+.+||+||-|||||+||.+|+|-++..+|+|.++|. ++||+|.|.+++ .||+|||.|+.
T Consensus 543 ~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs---------------iaYv~Q~pWI~n-gTvreNILFG~ 606 (1381)
T KOG0054|consen 543 EIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS---------------VAYVPQQPWIQN-GTVRENILFGS 606 (1381)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe---------------EEEeccccHhhC-CcHHHhhhcCc
Confidence 99999999999999999999999999999999999999982 899999999997 49999999975
Q ss_pred hhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCC
Q 016804 193 YENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPT 261 (382)
Q Consensus 193 ~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPt 261 (382)
. ++ +++.++.++.+.|+...+..| -+||||||||++||||+-+ +++|+|||.|+
T Consensus 607 ~----~d----~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~-------~adIYLLDDpl 671 (1381)
T KOG0054|consen 607 P----YD----EERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQ-------DADIYLLDDPL 671 (1381)
T ss_pred c----cc----HHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhc-------cCCEEEEcCcc
Confidence 2 33 344667788888876666655 5899999999999999998 59999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccCCCCccccccc
Q 016804 262 AGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIY 341 (382)
Q Consensus 262 agLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (382)
|++|....+.+++-.-...-++ +|+|+|||.++...+ ||
T Consensus 672 SAVDahvg~~if~~ci~~~L~~----------KT~ILVTHql~~L~~-ad------------------------------ 710 (1381)
T KOG0054|consen 672 SAVDAHVGKHIFEECIRGLLRG----------KTVILVTHQLQFLPH-AD------------------------------ 710 (1381)
T ss_pred hhhhHhhhHHHHHHHHHhhhcC----------CEEEEEeCchhhhhh-CC------------------------------
Confidence 9999999888776544322223 599999999888775 55
Q ss_pred EEEEEeCCeEEEEeccccccc
Q 016804 342 RLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 342 ~ii~l~~G~i~~~g~~~~~~~ 362 (382)
+|++|++|+|.+.|+.+|+..
T Consensus 711 ~Iivl~~G~I~~~Gty~el~~ 731 (1381)
T KOG0054|consen 711 QIIVLKDGKIVESGTYEELLK 731 (1381)
T ss_pred EEEEecCCeEecccCHHHHHh
Confidence 559999999999998888763
|
|
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=263.31 Aligned_cols=205 Identities=32% Similarity=0.459 Sum_probs=175.3
Q ss_pred eEEEEeEEEEeC-----C--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEE----CCCCC
Q 016804 91 LIDCRNVYKSFG-----E--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK----RAGLI 159 (382)
Q Consensus 91 ~I~~~nvs~~yg-----~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~----i~~~~ 159 (382)
.|.++||+|+|- + -++|+++||+++.||+++|=||||||||||||+|-|-|.||+|+|++.... +....
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 488999999992 2 369999999999999999999999999999999999999999999996432 21111
Q ss_pred Chh--hhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc-cccCCCCCCChHHHHHHH
Q 016804 160 SDE--EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVA 236 (382)
Q Consensus 160 ~~~--~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~-~~~~~~~~LSGGqrQRVa 236 (382)
... ..++..||||.|--...|..+..|-++.++.. .+.+.+..+.++..+|.++++.+ +..-.|.++||||||||.
T Consensus 84 pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~-~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVN 162 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLA-RGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVN 162 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHH-cCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehh
Confidence 111 12334599999988888888889999888754 45778888889999999999965 556678999999999999
Q ss_pred HHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 237 IArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
|||.++. +-+||||||||++||..++..+.++|++-+..| .++|=|-||-+.=...|||+
T Consensus 163 IaRgfiv-------d~pILLLDEPTasLDa~Nr~vVveli~e~Ka~G----------aAlvGIFHDeevre~vadR~ 222 (235)
T COG4778 163 IARGFIV-------DYPILLLDEPTASLDATNRAVVVELIREAKARG----------AALVGIFHDEEVREAVADRL 222 (235)
T ss_pred hhhhhhc-------cCceEEecCCcccccccchHHHHHHHHHHHhcC----------ceEEEeeccHHHHHHHhhhe
Confidence 9999997 489999999999999999999999999988887 58999999998888899998
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-35 Score=251.39 Aligned_cols=133 Identities=50% Similarity=0.774 Sum_probs=115.6
Q ss_pred eEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHH
Q 016804 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRE 186 (382)
Q Consensus 107 L~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~e 186 (382)
|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... .....+..++|++|++.+++.+|+.+
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~tv~~ 78 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDI--DIEELRRRIGYVPQDPQLFPGLTVRE 78 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTS--HHHHHHHTEEEEESSHCHHTTSBHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccc--cccccccccccccccccccccccccc
Confidence 7899999999999999999999999999999999999999999999998652 22223346999999999999999999
Q ss_pred HHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC----CCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCC
Q 016804 187 NVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP----SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA 262 (382)
Q Consensus 187 ni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~----~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPta 262 (382)
| ...+++.++++.+++.+..++.+ .+||+|||||++|||||++ +|++||||||||
T Consensus 79 ~--------------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~-------~~~llllDEPt~ 137 (137)
T PF00005_consen 79 N--------------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLK-------NPKLLLLDEPTN 137 (137)
T ss_dssp H--------------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHT-------TSSEEEEESTTT
T ss_pred c--------------cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHc-------CCCEEEEeCCCC
Confidence 9 12344677888888876655555 9999999999999999997 699999999997
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-35 Score=263.14 Aligned_cols=229 Identities=25% Similarity=0.377 Sum_probs=192.6
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
.+++++||..+- =|-.+|.++..||++-+||||||||||||-.++|+. |-+|+|.++|.++..+. ..+..+ +-
T Consensus 2 ~l~qln~v~~~t----RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~-~~eLAr-hR 74 (248)
T COG4138 2 ILMQLNDVAEST----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWS-ATELAR-HR 74 (248)
T ss_pred ceeeeccccccc----cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHh-HhHHHH-HH
Confidence 357888887643 478899999999999999999999999999999997 57899999999976553 223332 35
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
+|+.|+..-...|.|+.++.+.. +.++....+.++...+++++.+.|..++|||||.|||-+|-..++-++...
T Consensus 75 AYLsQqq~p~f~mpV~~YL~L~q------P~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~N 148 (248)
T COG4138 75 AYLSQQQTPPFAMPVWHYLTLHQ------PDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDAN 148 (248)
T ss_pred HHHhhccCCcchhhhhhhhhhcC------chHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCC
Confidence 79998765444589999987632 234555667889999999999999999999999999999999988666666
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
...++||+|||.++||...+..+..+|.+++++| .+|||++||++...+.||++
T Consensus 149 P~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G----------~~vims~HDLNhTLrhA~~~---------------- 202 (248)
T COG4138 149 PAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQG----------LAIVMSSHDLNHTLRHAHRA---------------- 202 (248)
T ss_pred ccceeEEecCCCcchhHHHHHHHHHHHHHHHhCC----------cEEEEeccchhhHHHHHHHH----------------
Confidence 6678999999999999999999999999999998 69999999999999999999
Q ss_pred cCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHHc
Q 016804 330 AVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFAS 373 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 373 (382)
|.|+.|++..+|..+|++++ ++..+.+.
T Consensus 203 --------------wLL~rG~l~~~G~~~eVlt~--~vL~q~fg 230 (248)
T COG4138 203 --------------WLLKRGKLLASGRREEVLTP--PVLAQAYG 230 (248)
T ss_pred --------------HHHhcCeEEeecchhhhcCh--HHHHHHhc
Confidence 99999999999999998753 45555544
|
|
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=268.63 Aligned_cols=202 Identities=24% Similarity=0.320 Sum_probs=154.4
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHH-----c-CC----CCCcc-----------EEEECCEECCCCCChh
Q 016804 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIA-----G-LL----APDKG-----------EVYIRGRKRAGLISDE 162 (382)
Q Consensus 104 ~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~-----G-l~----~p~sG-----------~I~i~G~~i~~~~~~~ 162 (382)
..-|+|||++|+.|.+++|.|+||||||||++.+. . +. .|..+ -|.++..++.......
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 45799999999999999999999999999999662 1 11 12211 3666665553321100
Q ss_pred --------h-hc----------c-----ceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc
Q 016804 163 --------E-IS----------G-----LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG 218 (382)
Q Consensus 163 --------~-~~----------~-----~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~ 218 (382)
+ ++ + +.+.|..++...+..+||.|++.|.... . . .+++.++++.+||..
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~----~--~-~~~~~~~L~~vgL~~ 160 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENI----P--K-IARKLQTLCDVGLGY 160 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhh----h--h-HHHHHHHHHHcCCch
Confidence 0 00 0 1255666666666789999999885421 1 1 234677899999987
Q ss_pred -cccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEE
Q 016804 219 -VEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYV 297 (382)
Q Consensus 219 -~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiI 297 (382)
.+++++.+|||||+||++|||+|++++ .+|+++||||||+|||+..+..+.+.|+++.++| .|+|
T Consensus 161 l~l~~~~~~LSgGe~QRl~LAraL~~~~----~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g----------~tvI 226 (261)
T cd03271 161 IKLGQPATTLSGGEAQRIKLAKELSKRS----TGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKG----------NTVV 226 (261)
T ss_pred hhhcCccccCCHHHHHHHHHHHHHhcCC----CCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCC----------CEEE
Confidence 579999999999999999999999631 1389999999999999999999999999998776 4999
Q ss_pred EEccCHHHHHHhhchhccccccccchheehhccCCCCcccccccEEEEE------eCCeEEEEecc
Q 016804 298 VVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFL------YEGKIVWQGMT 357 (382)
Q Consensus 298 ivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l------~~G~i~~~g~~ 357 (382)
++||+++.+. .||++ ++| ++|+|+++|++
T Consensus 227 iitH~~~~i~-~aD~i------------------------------i~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 227 VIEHNLDVIK-CADWI------------------------------IDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred EEeCCHHHHH-hCCEE------------------------------EEecCCcCCCCCEEEEeCCC
Confidence 9999999986 68877 999 89999999853
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-33 Score=256.83 Aligned_cols=165 Identities=26% Similarity=0.358 Sum_probs=130.2
Q ss_pred ee-EeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCc---------cEEEECCEECCCCCChhhhccceEEEEecC
Q 016804 106 IL-RGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDK---------GEVYIRGRKRAGLISDEEISGLRIGLVFQS 175 (382)
Q Consensus 106 iL-~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~s---------G~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~ 175 (382)
-+ ++++|++++| +++|+||||||||||+++|+|+.+|.. |++.++|++... .. ...+|+||||+
T Consensus 11 ~~~~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~v~~vfq~ 84 (197)
T cd03278 11 SFADKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRK---PA--NFAEVTLTFDN 84 (197)
T ss_pred CcCCCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCC---CC--ceEEEEEEEEc
Confidence 35 6789999999 999999999999999999999987653 467777776432 11 12469999999
Q ss_pred CCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEE
Q 016804 176 AALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVL 255 (382)
Q Consensus 176 ~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iL 255 (382)
+..+ |.. .. .+++.++++. .+..++.+.+||||||||++|||+|+.. ...+|+++
T Consensus 85 ~~~~----------~~~-----~~----~~~~~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~---~~~~~~il 139 (197)
T cd03278 85 SDGR----------YSI-----IS----QGDVSEIIEA---PGKKVQRLSLLSGGEKALTALALLFAIF---RVRPSPFC 139 (197)
T ss_pred CCCc----------eeE-----Ee----hhhHHHHHhC---CCccccchhhcCHHHHHHHHHHHHHHHh---ccCCCCEE
Confidence 9876 211 01 2345566666 5567889999999999999999999620 00147999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 256 LYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 256 LLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
||||||++||+..+..+.+.|+++++ + .|||++||+++.+ ++||++
T Consensus 140 llDEP~~~LD~~~~~~l~~~l~~~~~-~----------~tiIiitH~~~~~-~~~d~v 185 (197)
T cd03278 140 VLDEVDAALDDANVERFARLLKEFSK-E----------TQFIVITHRKGTM-EAADRL 185 (197)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcc-C----------CEEEEEECCHHHH-hhcceE
Confidence 99999999999999999999999865 3 4899999999986 579988
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-32 Score=277.72 Aligned_cols=222 Identities=26% Similarity=0.402 Sum_probs=190.2
Q ss_pred CCcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhcc
Q 016804 87 DGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (382)
Q Consensus 87 ~~~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~ 166 (382)
.+.+.++++|++..- .++|+||++++||++||.|==|||+|-|+++|.|..++++|+|+++|+++... +..+..+
T Consensus 259 ~~~~~l~v~~l~~~~----~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~-sp~~Ai~ 333 (500)
T COG1129 259 IGEPVLEVRNLSGGG----KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIR-SPRDAIK 333 (500)
T ss_pred CCCcEEEEecCCCCC----ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCC-CHHHHHH
Confidence 356789999998542 68999999999999999999999999999999999999999999999987653 3333334
Q ss_pred ceEEEEecCC---CCCCCCCHHHHHHhhH-hhcC---CCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHHH
Q 016804 167 LRIGLVFQSA---ALFDSLTVRENVGFLL-YENS---KMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALA 238 (382)
Q Consensus 167 ~~Ig~V~Q~~---~l~~~lTV~eni~~~~-~~~~---~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaIA 238 (382)
..|+|||.|- .++..++|.+|+.+.. .... -.+.....+.++++.+.+++. .-.+..+.+||||.||||.||
T Consensus 334 ~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvla 413 (500)
T COG1129 334 AGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLA 413 (500)
T ss_pred cCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHH
Confidence 4699999984 5888999999998872 1211 245555567788899999996 456788999999999999999
Q ss_pred HHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccc
Q 016804 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQI 318 (382)
Q Consensus 239 rAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~ 318 (382)
|.|.. +|++|||||||.|+|.-++.+++++|++|+++| ++|||+|-++.++..+||||
T Consensus 414 rwL~~-------~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G----------~ail~iSSElpEll~~~DRI----- 471 (500)
T COG1129 414 RWLAT-------DPKVLILDEPTRGIDVGAKAEIYRLIRELAAEG----------KAILMISSELPELLGLSDRI----- 471 (500)
T ss_pred HHHhc-------CCCEEEECCCCcCcccchHHHHHHHHHHHHHCC----------CEEEEEeCChHHHHhhCCEE-----
Confidence 99986 699999999999999999999999999999998 59999999999999999988
Q ss_pred cccchheehhccCCCCcccccccEEEEEeCCeEEEEeccccc
Q 016804 319 FGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEF 360 (382)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~ 360 (382)
+||++|+|+..-..+++
T Consensus 472 -------------------------lVm~~Gri~~e~~~~~~ 488 (500)
T COG1129 472 -------------------------LVMREGRIVGELDREEA 488 (500)
T ss_pred -------------------------EEEECCEEEEEeccccC
Confidence 99999999986655553
|
|
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.3e-33 Score=264.57 Aligned_cols=198 Identities=22% Similarity=0.301 Sum_probs=147.0
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC-ccEEEECCE-ECCCCCChhhhccceE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD-KGEVYIRGR-KRAGLISDEEISGLRI 169 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~-sG~I~i~G~-~i~~~~~~~~~~~~~I 169 (382)
|+++|. ++|.+..++.++ ...+++||||||||||||+++|++++.++ .|++++.|. ++............+|
T Consensus 6 ~~~~~f-~~~~~~~~~~~~-----~~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v 79 (251)
T cd03273 6 IILDGF-KSYATRTVISGF-----DPQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASV 79 (251)
T ss_pred EEEeCc-cccCcCEeeccC-----CCCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEE
Confidence 567776 667654433332 25699999999999999999999999987 468888776 3221111111123369
Q ss_pred EEEecCC---------CCCCCCCHHHHHHhhHhhcCCC-CHHHHHHHHHHHHHHcCCc--------------------cc
Q 016804 170 GLVFQSA---------ALFDSLTVRENVGFLLYENSKM-RDEQISELVKENLAAVGLK--------------------GV 219 (382)
Q Consensus 170 g~V~Q~~---------~l~~~lTV~eni~~~~~~~~~~-~~~~~~~~v~~~L~~~gL~--------------------~~ 219 (382)
+++||++ .+.+.+||.+|+.++....... ......+++.++|+.+|+. +.
T Consensus 80 ~~~fq~~~~~~~~~~~~~~~~ltV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~ 159 (251)
T cd03273 80 TIVFDNSDKSQSPIGFENYPEITVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGV 159 (251)
T ss_pred EEEEEcCCcccCcccccCCceEEEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHh
Confidence 9999985 3456789998886643211101 1223346788899999996 45
Q ss_pred ccCCCCCCChHHHHHHHHHHHHhc---CCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEE
Q 016804 220 EDRLPSELSGGMKKRVALARSIIF---DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASY 296 (382)
Q Consensus 220 ~~~~~~~LSGGqrQRVaIArAL~~---~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~ti 296 (382)
.++++.+||+|||||++|||||+. . +|+++||||||++||+..+..+.+.|+++.+ | .|+
T Consensus 160 ~~~~~~~lS~G~~qr~~la~al~~~~~~------~~~illlDEPt~~ld~~~~~~~~~~l~~~~~-g----------~~i 222 (251)
T cd03273 160 WKESLTELSGGQRSLVALSLILALLLFK------PAPMYILDEVDAALDLSHTQNIGRMIKTHFK-G----------SQF 222 (251)
T ss_pred hcccccccCHHHHHHHHHHHHHHHhhcc------CCCEEEEeCCCcCCCHHHHHHHHHHHHHHcC-C----------CEE
Confidence 568899999999999999999972 1 4899999999999999999999999999854 4 489
Q ss_pred EEEccCHHHHHHhhchh
Q 016804 297 VVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 297 IivTHdl~~~~~~aDrv 313 (382)
|++||+ .++.+.||++
T Consensus 223 i~iSH~-~~~~~~~d~v 238 (251)
T cd03273 223 IVVSLK-EGMFNNANVL 238 (251)
T ss_pred EEEECC-HHHHHhCCEE
Confidence 999999 5555679988
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-32 Score=254.69 Aligned_cols=201 Identities=22% Similarity=0.274 Sum_probs=140.3
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHH----------------cCCCCCcc--------E
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIA----------------GLLAPDKG--------E 147 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~----------------Gl~~p~sG--------~ 147 (382)
|+++|. |+|++..++++++ |++++|+||||||||||+++|+ +++.+++| +
T Consensus 4 i~~~nf-ksy~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~ 77 (243)
T cd03272 4 VIIQGF-KSYKDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVE 77 (243)
T ss_pred EEEeCc-cCcccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEE
Confidence 566665 3688888888887 8899999999999999999998 55666667 6
Q ss_pred EEECCEECCC-CCChhhhccceEEEEecCCCCCC-CCCHHHHHHhhHhhcCCCCHHHHHH--HHHHHHHHcCCcccccCC
Q 016804 148 VYIRGRKRAG-LISDEEISGLRIGLVFQSAALFD-SLTVRENVGFLLYENSKMRDEQISE--LVKENLAAVGLKGVEDRL 223 (382)
Q Consensus 148 I~i~G~~i~~-~~~~~~~~~~~Ig~V~Q~~~l~~-~lTV~eni~~~~~~~~~~~~~~~~~--~v~~~L~~~gL~~~~~~~ 223 (382)
|.+++.+-.. ........++++++++|++.+++ ..|..|...+.. .. +........ ...+..+.+++.+..++.
T Consensus 78 i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~-~~-gl~~~~~~~~~~qg~i~~l~~l~~~~~~~ 155 (243)
T cd03272 78 IIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLE-SA-GFSRSNPYYIVPQGKINSLTNMKQDEQQE 155 (243)
T ss_pred EEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHH-Hc-CCCCCCCcEEEEcCchHHhhhcccccccc
Confidence 7776532110 00111112335999999988877 357666554432 21 222110000 001233345566667889
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCH
Q 016804 224 PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQH 303 (382)
Q Consensus 224 ~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl 303 (382)
+.+||||||||++|||||+... ..+|+++||||||++||+.++..+.+.|+++.+ + .++|++||+.
T Consensus 156 ~~~lS~G~~~r~~la~~l~~~~---~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~----------~~ii~~~h~~ 221 (243)
T cd03272 156 MQQLSGGQKSLVALALIFAIQK---CDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-G----------AQFITTTFRP 221 (243)
T ss_pred ccccCHHHHHHHHHHHHHHHhc---cCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-C----------CEEEEEecCH
Confidence 9999999999999999996200 014899999999999999999999999999865 4 4788888885
Q ss_pred HHHHHhhchhcc
Q 016804 304 STIRRAVDRLCL 315 (382)
Q Consensus 304 ~~~~~~aDrv~~ 315 (382)
++.++|||+++
T Consensus 222 -~~~~~~d~i~~ 232 (243)
T cd03272 222 -ELLEVADKFYG 232 (243)
T ss_pred -HHHhhCCEEEE
Confidence 56789999844
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-31 Score=250.13 Aligned_cols=194 Identities=23% Similarity=0.261 Sum_probs=136.8
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEe-CCcEEEEEcCCCccHHHHHHHHHc-CCCCCccEEEECCEECCCCCChhhhccce
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIR-HGEAVGIIGPSGTGKSTILKIIAG-LLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~-~Ge~vaLiGpNGaGKSTLLklI~G-l~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
.|+++|+. +|.+. .+++|+.. +|++++|+||||||||||+++|++ ++-+..+....+. .... .... .....
T Consensus 5 ~i~l~nf~-~y~~~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~-~~~~-~~~~-~~~~~ 77 (213)
T cd03279 5 KLELKNFG-PFREE---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQEN-LRSV-FAPG-EDTAE 77 (213)
T ss_pred EEEEECCc-CcCCc---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchh-HHHH-hcCC-CccEE
Confidence 38899998 77554 56667644 589999999999999999999995 4444445444321 1000 0111 11235
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCC--
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT-- 246 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~-- 246 (382)
|+++||+.... .++..+ .+.+.++..+.+ .++..++.++.++++.+||||||||++|||||+..+.
T Consensus 78 v~~~f~~~~~~--~~~~r~--------~gl~~~~~~~~~--~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~ 145 (213)
T cd03279 78 VSFTFQLGGKK--YRVERS--------RGLDYDQFTRIV--LLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQ 145 (213)
T ss_pred EEEEEEECCeE--EEEEEe--------cCCCHHHHHHhh--hhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhh
Confidence 99999987421 111111 123333332221 3455567788899999999999999999999974100
Q ss_pred -CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 247 -KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 247 -~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+...+|+++||||||++||+..+..+.+.|+++++++ .|+|+|||+++.+..+||++
T Consensus 146 ~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~----------~tii~itH~~~~~~~~~~~i 203 (213)
T cd03279 146 NRGGARLEALFIDEGFGTLDPEALEAVATALELIRTEN----------RMVGVISHVEELKERIPQRL 203 (213)
T ss_pred hccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCC----------CEEEEEECchHHHHhhCcEE
Confidence 0002589999999999999999999999999997765 59999999999999999887
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-33 Score=259.22 Aligned_cols=185 Identities=19% Similarity=0.235 Sum_probs=140.8
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
|+++|.. +|+++.++++++| ++++|+||||||||||+++|. +++|.+... ..+.++++
T Consensus 6 l~l~nfk-~~~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~~~------~~~~~i~~ 63 (212)
T cd03274 6 LVLENFK-SYAGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRASK------MRQKKLSD 63 (212)
T ss_pred EEEECcc-cCCCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCHHH------hhhhhHHH
Confidence 7788887 8999999999998 899999999999999999997 334543211 11235899
Q ss_pred EecCCCCCCCCCHHHHHHhhHhhc-------CCCCHHHHHH--HHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHh
Q 016804 172 VFQSAALFDSLTVRENVGFLLYEN-------SKMRDEQISE--LVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSII 242 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~~~~~~-------~~~~~~~~~~--~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~ 242 (382)
++|+..+++.+|+.+++.+..... .+...+.... ...++++.++|.+..++++..||+|||||++||||++
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~ 143 (212)
T cd03274 64 LIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFA 143 (212)
T ss_pred HhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHH
Confidence 999988888889888776543210 1111111000 0145667888888888899999999999999999996
Q ss_pred cCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 243 ~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
... ..+|++++|||||+|||+.++..+.+.|+++.++ .|+|++||+. ++.++|||+
T Consensus 144 ~~~---~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~-----------~~~iivs~~~-~~~~~~d~v 199 (212)
T cd03274 144 LHH---YKPTPLYVMDEIDAALDFRNVSIVANYIKERTKN-----------AQFIVISLRN-NMFELADRL 199 (212)
T ss_pred hcc---cCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCC-----------CEEEEEECcH-HHHHhCCEE
Confidence 300 0047999999999999999999999999998654 3899999995 667899988
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-30 Score=238.18 Aligned_cols=239 Identities=24% Similarity=0.340 Sum_probs=191.2
Q ss_pred ceEEEEeEEEEeC----CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC----CCccEEEECCEECCCCCCh
Q 016804 90 VLIDCRNVYKSFG----EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA----PDKGEVYIRGRKRAGLISD 161 (382)
Q Consensus 90 ~~I~~~nvs~~yg----~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~----p~sG~I~i~G~~i~~~~~~ 161 (382)
+.+.++|++..+. -.+++++||+++.+||+-|+||.||||||-..|.|+|..+ .+.-..++++.++-.+...
T Consensus 2 ~LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr 81 (330)
T COG4170 2 PLLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred CcccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChH
Confidence 3577889988883 3579999999999999999999999999999999999975 3566788888887666443
Q ss_pred hhh--ccceEEEEecCCC--CCCCCCHHHHHHhh--HhhcCCCCH---HHHHHHHHHHHHHcCCcc---cccCCCCCCCh
Q 016804 162 EEI--SGLRIGLVFQSAA--LFDSLTVRENVGFL--LYENSKMRD---EQISELVKENLAAVGLKG---VEDRLPSELSG 229 (382)
Q Consensus 162 ~~~--~~~~Ig~V~Q~~~--l~~~lTV~eni~~~--~~~~~~~~~---~~~~~~v~~~L~~~gL~~---~~~~~~~~LSG 229 (382)
+.+ ....|+++||+|. |-|+.+|...+.-. .+.+.+... .-.++++-++|.++|+.+ ....||.+|.-
T Consensus 82 ~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTe 161 (330)
T COG4170 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTE 161 (330)
T ss_pred HhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhcc
Confidence 321 1234999999985 56665665444221 111111100 112455778999999964 45679999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHh
Q 016804 230 GMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA 309 (382)
Q Consensus 230 GqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~ 309 (382)
||=|+|.||.|++. +|++||.||||+++|+.++.+++++|.++++... .||++++||+..+.+.
T Consensus 162 GE~QKVMIA~A~An-------qPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~---------TtILL~s~Dl~~is~W 225 (330)
T COG4170 162 GECQKVMIAIALAN-------QPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSN---------TTILLISHDLQMISQW 225 (330)
T ss_pred Ccceeeeeehhhcc-------CCceEeccCCCcccCccHHHHHHHHHHHhhccCC---------ceEEEEcccHHHHHHH
Confidence 99999999999986 7999999999999999999999999999987642 6999999999999999
Q ss_pred hchhccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 310 VDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 310 aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
||++ -||+.|+-++.+.++++. .+.||++++++..
T Consensus 226 ~d~i------------------------------~VlYCGQ~~ESa~~e~l~~~PhHPYTqALi~a 261 (330)
T COG4170 226 ADKI------------------------------NVLYCGQTVESAPSEELVTMPHHPYTQALIRA 261 (330)
T ss_pred hhhe------------------------------EEEEecccccccchhHHhcCCCCchHHHHHHh
Confidence 9988 899999999999888865 5789999998874
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-28 Score=250.00 Aligned_cols=230 Identities=26% Similarity=0.444 Sum_probs=198.5
Q ss_pred CCCCCcceEEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEEC-CCCCCh
Q 016804 84 PEDDGDVLIDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKR-AGLISD 161 (382)
Q Consensus 84 ~~~~~~~~I~~~nvs~~yg~-~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i-~~~~~~ 161 (382)
+...+++.++++||+..-.. .+.+++|||+|++||++||.|=.|-|-+.|+.+|+|+.+|.+|+|.++|+++ ..+ +.
T Consensus 250 ~~~pg~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~-~~ 328 (501)
T COG3845 250 PSTPGEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRL-SP 328 (501)
T ss_pred CCCCCCeEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccC-CH
Confidence 44456889999999987643 5789999999999999999999999999999999999999999999999996 333 33
Q ss_pred hhhccceEEEEecCC---CCCCCCCHHHHHHhhHhhc-----C-CCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHH
Q 016804 162 EEISGLRIGLVFQSA---ALFDSLTVRENVGFLLYEN-----S-KMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGM 231 (382)
Q Consensus 162 ~~~~~~~Ig~V~Q~~---~l~~~lTV~eni~~~~~~~-----~-~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGq 231 (382)
..+.+..+||||.|. .+.+.+|+.||+.+..+.. . -.+..++.+.+.++++.+++. .-...+...||||+
T Consensus 329 ~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGN 408 (501)
T COG3845 329 RERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGN 408 (501)
T ss_pred HHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcc
Confidence 333445799999985 5788899999998865421 1 146678888899999999996 45566789999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhc
Q 016804 232 KKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVD 311 (382)
Q Consensus 232 rQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aD 311 (382)
+||+-+||-|.+ +|++||+.+||.|||..+.+.+.+.|.+.+++| ++|+++|-|++++..+||
T Consensus 409 qQK~IlaREl~~-------~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G----------~AVLLiS~dLDEil~lsD 471 (501)
T COG3845 409 QQKLILARELAR-------RPDLLIAAQPTRGLDVGAIEFIHERLLELRDAG----------KAVLLISEDLDEILELSD 471 (501)
T ss_pred eehhhhhhhhcc-------CCCEEEEcCCCccccHHHHHHHHHHHHHHHhcC----------CEEEEEehhHHHHHHhhh
Confidence 999999999986 699999999999999999999999999999987 599999999999999999
Q ss_pred hhccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 312 RLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 312 rv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
|| .||++|+|+....+++.+
T Consensus 472 rI------------------------------aVi~~Gri~~~~~~~~~t 491 (501)
T COG3845 472 RI------------------------------AVIYEGRIVGIVPPEEAT 491 (501)
T ss_pred ee------------------------------eeeeCCceecccccccCC
Confidence 88 999999999888777643
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-29 Score=249.14 Aligned_cols=251 Identities=24% Similarity=0.319 Sum_probs=187.3
Q ss_pred hhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCcceEEEEeEEE
Q 016804 20 SSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRNVYK 99 (382)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvs~ 99 (382)
-+++..+...- -.+..++...+|+.+.--.|+......+... | + -..|+++||.|
T Consensus 276 r~pL~s~vgil-----P~l~~AqvA~~kiakle~~~~~a~~~~~q~~------------------p-~-~~~lelrnvrf 330 (546)
T COG4615 276 RTPLLSAVGIL-----PTLLTAQVAFNKIAKLELAPYKADFPRPQAF------------------P-D-WKTLELRNVRF 330 (546)
T ss_pred hhHHHHHHhhh-----hHHHHHHHHHHHHHHhhcCCccccCCCCCcC------------------C-c-ccceeeeeeee
Confidence 44554444333 3677889999999988877754443332111 1 1 12499999999
Q ss_pred EeCCe-eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCC
Q 016804 100 SFGEK-HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAAL 178 (382)
Q Consensus 100 ~yg~~-~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l 178 (382)
.|.+. .-+..||++|++||++-|+|.||||||||++++.||++|++|+|++||+++..-. .++.+ .-++-||-|.+|
T Consensus 331 ay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~-ledYR-~LfSavFsDyhL 408 (546)
T COG4615 331 AYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQ-LEDYR-KLFSAVFSDYHL 408 (546)
T ss_pred ccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCC-HHHHH-HHHHHHhhhHhh
Confidence 99765 6799999999999999999999999999999999999999999999999876532 22222 237889999999
Q ss_pred CCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc---ccccCC--CCCCChHHHHHHHHHHHHhcCCCCCCCCCc
Q 016804 179 FDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK---GVEDRL--PSELSGGMKKRVALARSIIFDNTKESVEPE 253 (382)
Q Consensus 179 ~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~---~~~~~~--~~~LSGGqrQRVaIArAL~~~~~~~a~~P~ 253 (382)
|+.+--.|+- .+ .+.++.+|+++.+. ...+.. +-.||.|||+|+|+--||+- +-+
T Consensus 409 F~~ll~~e~~---------as----~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllE-------eR~ 468 (546)
T COG4615 409 FDQLLGPEGK---------AS----PQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLE-------ERD 468 (546)
T ss_pred hHhhhCCccC---------CC----hHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHh-------hCC
Confidence 9852111110 12 23355666666654 333433 46799999999999999996 699
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHH-HHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccCC
Q 016804 254 VLLYDEPTAGLDPIASTVVEDLIRS-VHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVA 332 (382)
Q Consensus 254 iLLLDEPtagLD~~~~~~l~~lL~~-l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~ 332 (382)
|+++||=-+..||.-++.+...+-- ++++| +||+.||||-.-. .+|||+
T Consensus 469 Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qG----------KTI~aIsHDd~YF-~~ADrl------------------- 518 (546)
T COG4615 469 ILVLDEWAADQDPAFRREFYQVLLPLLKEQG----------KTIFAISHDDHYF-IHADRL------------------- 518 (546)
T ss_pred eEEeehhhccCChHHHHHHHHHHhHHHHHhC----------CeEEEEecCchhh-hhHHHH-------------------
Confidence 9999999999999999999887655 45667 5999999996554 468888
Q ss_pred CCcccccccEEEEEeCCeEEEEecccc
Q 016804 333 PDKEVFFIYRLIFLYEGKIVWQGMTHE 359 (382)
Q Consensus 333 ~~~~~~~~~~ii~l~~G~i~~~g~~~~ 359 (382)
+.|.+|++++.- +++
T Consensus 519 -----------l~~~~G~~~e~t-ge~ 533 (546)
T COG4615 519 -----------LEMRNGQLSELT-GEE 533 (546)
T ss_pred -----------HHHhcCceeecc-ccc
Confidence 778899998864 444
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=282.57 Aligned_cols=222 Identities=22% Similarity=0.345 Sum_probs=163.6
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHH---------HHHcCCCCCc----cE----EEECC
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILK---------IIAGLLAPDK----GE----VYIRG 152 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLk---------lI~Gl~~p~s----G~----I~i~G 152 (382)
..|+++|++. ..|+++||+|++||+++|.|+||||||||++ .|.|...+.. +. |.|+-
T Consensus 599 ~~L~l~~~~~-----~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~idQ 673 (1809)
T PRK00635 599 GTLTLSKATK-----HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHITR 673 (1809)
T ss_pred CeEEEecccc-----CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEecC
Confidence 3688998873 3799999999999999999999999999999 6666543311 11 22322
Q ss_pred EECCCCCC---hh------hhc---------c---c-eEEEEecC------------------C----------------
Q 016804 153 RKRAGLIS---DE------EIS---------G---L-RIGLVFQS------------------A---------------- 176 (382)
Q Consensus 153 ~~i~~~~~---~~------~~~---------~---~-~Ig~V~Q~------------------~---------------- 176 (382)
..+..... .. +++ + . ...|.|+. +
T Consensus 674 spigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~~ 753 (1809)
T PRK00635 674 DLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFLP 753 (1809)
T ss_pred CCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccCH
Confidence 22111000 00 000 0 0 12233332 0
Q ss_pred ----CCCCCCCHHHHHHhhHhhcC--CCCHHHHHHHHHHHHHHcCCccc-ccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 177 ----ALFDSLTVRENVGFLLYENS--KMRDEQISELVKENLAAVGLKGV-EDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 177 ----~l~~~lTV~eni~~~~~~~~--~~~~~~~~~~v~~~L~~~gL~~~-~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
..|...||.|++.+...... ....+++.+++ ++|+.+||.+. .++.+.+||||||||++|||||+.. +
T Consensus 754 e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~----~ 828 (1809)
T PRK00635 754 QVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAP----S 828 (1809)
T ss_pred HHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhc----C
Confidence 24667899999988764321 12344566666 58999999876 7999999999999999999999731 1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
.+|++|||||||+|||+..+..++++|++++++| .|||+|||+++.+ ++||++
T Consensus 829 ~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G----------~TVIiIsHdl~~i-~~aDrV---------------- 881 (1809)
T PRK00635 829 KKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQG----------HTVVIIEHNMHVV-KVADYV---------------- 881 (1809)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHH-HhCCEE----------------
Confidence 2699999999999999999999999999998776 4999999999998 788877
Q ss_pred cCCCCcccccccEEEEEe------CCeEEEEeccccccc
Q 016804 330 AVAPDKEVFFIYRLIFLY------EGKIVWQGMTHEFTS 362 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l~------~G~i~~~g~~~~~~~ 362 (382)
++|. +|+++++|+++++..
T Consensus 882 --------------i~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 882 --------------LELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred --------------EEEccCCCCCCCEEEEeCCHHHHHh
Confidence 8885 799999999988754
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-29 Score=275.74 Aligned_cols=141 Identities=28% Similarity=0.376 Sum_probs=116.9
Q ss_pred CCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc-cccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCC---cEEEE
Q 016804 182 LTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALARSIIFDNTKESVEP---EVLLY 257 (382)
Q Consensus 182 lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~-~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P---~iLLL 257 (382)
+||.|++.|.... . .+. ...+.|+.+||.. .+++.+.+|||||+||++|||+|++ +| +++||
T Consensus 792 ltv~E~l~~f~~~----~--~i~-~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~-------~p~~~~llIL 857 (943)
T PRK00349 792 MTVEEALEFFEAI----P--KIA-RKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSK-------RSTGKTLYIL 857 (943)
T ss_pred CcHHHHHHHHHhc----h--hhh-HHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhc-------CCCCCeEEEE
Confidence 6888888774321 1 122 2357899999986 5789999999999999999999997 47 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccCCCCccc
Q 016804 258 DEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEV 337 (382)
Q Consensus 258 DEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~ 337 (382)
||||+|||+..+..++++|+++.++| .|||+|||+++.+. .||++
T Consensus 858 DEPtsGLD~~~~~~L~~~L~~l~~~G----------~TVIiitH~~~~i~-~aD~i------------------------ 902 (943)
T PRK00349 858 DEPTTGLHFEDIRKLLEVLHRLVDKG----------NTVVVIEHNLDVIK-TADWI------------------------ 902 (943)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCC----------CEEEEEecCHHHHH-hCCEE------------------------
Confidence 99999999999999999999998776 49999999999985 68877
Q ss_pred ccccEEEEE------eCCeEEEEecccccccCCCHHHHHHHcCCCC
Q 016804 338 FFIYRLIFL------YEGKIVWQGMTHEFTSSSNPIVQQFASGSLE 377 (382)
Q Consensus 338 ~~~~~ii~l------~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~ 377 (382)
++| ++|+|+++|+++++.......+.+|+.+.++
T Consensus 903 ------i~Lgp~~G~~~G~Iv~~Gt~~el~~~~~s~t~~~l~~~~~ 942 (943)
T PRK00349 903 ------IDLGPEGGDGGGEIVATGTPEEVAKVEASYTGRYLKPVLE 942 (943)
T ss_pred ------EEecCCcCCCCCEEEEeCCHHHHHhCcccHHHHHHHHHhh
Confidence 999 7999999999998876555777887765443
|
|
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-29 Score=234.26 Aligned_cols=160 Identities=25% Similarity=0.330 Sum_probs=124.1
Q ss_pred eeEEEeCCcEEEEEcCCCccHHHHHHHHH----cCCCCCccEEEECCEECCCCCChhhhccceEEEEecCC-----CCCC
Q 016804 110 VSFKIRHGEAVGIIGPSGTGKSTILKIIA----GLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSA-----ALFD 180 (382)
Q Consensus 110 vsl~i~~Ge~vaLiGpNGaGKSTLLklI~----Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~-----~l~~ 180 (382)
.++++.+| +++|+||||||||||+++|. |..+|++|.+..+.+.+.. . ..+..|+++||++ ....
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~---~--~~~~~v~~~f~~~~~~~~~v~r 89 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIRE---G--EVRAQVKLAFENANGKKYTITR 89 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhC---C--CCcEEEEEEEEeCCCCEEEEEE
Confidence 34566677 99999999999999999995 9999988877622221111 1 1223699999998 3455
Q ss_pred CCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHH------HHHHHHHhcCCCCCCCCCcE
Q 016804 181 SLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKR------VALARSIIFDNTKESVEPEV 254 (382)
Q Consensus 181 ~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQR------VaIArAL~~~~~~~a~~P~i 254 (382)
.+|+++|+.+. ...+ +.+.+ ++.+.+||+||+|| ++|||||+. +|++
T Consensus 90 ~~~~~~~~~~~-------~~~~----~~~~~---------~~~~~~LS~G~~~~~~la~rlala~al~~-------~p~i 142 (204)
T cd03240 90 SLAILENVIFC-------HQGE----SNWPL---------LDMRGRCSGGEKVLASLIIRLALAETFGS-------NCGI 142 (204)
T ss_pred EhhHhhceeee-------chHH----HHHHH---------hcCccccCccHHHHHHHHHHHHHHHHhcc-------CCCE
Confidence 56899999663 1122 22222 78899999999996 789999986 6999
Q ss_pred EEEeCCCCCCCHHHHH-HHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 255 LLYDEPTAGLDPIAST-VVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 255 LLLDEPtagLD~~~~~-~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+||||||++||+..+. .+.++|++++++ + .|+|++||+++.+. .||++
T Consensus 143 lllDEP~~~LD~~~~~~~l~~~l~~~~~~~~----------~~iiiitH~~~~~~-~~d~i 192 (204)
T cd03240 143 LALDEPTTNLDEENIEESLAEIIEERKSQKN----------FQLIVITHDEELVD-AADHI 192 (204)
T ss_pred EEEcCCccccCHHHHHHHHHHHHHHHHhccC----------CEEEEEEecHHHHh-hCCEE
Confidence 9999999999999999 999999999876 4 59999999998764 68877
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.7e-30 Score=260.63 Aligned_cols=187 Identities=28% Similarity=0.388 Sum_probs=157.0
Q ss_pred CcceEEEEeEEEEeCCe-eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhcc
Q 016804 88 GDVLIDCRNVYKSFGEK-HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (382)
Q Consensus 88 ~~~~I~~~nvs~~yg~~-~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~ 166 (382)
..|.+.+.||+|.|.+. .++++++|-|..++.+++|||||||||||||++.|.+.|+.|.|.-.-..
T Consensus 386 p~pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~------------ 453 (614)
T KOG0927|consen 386 PPPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHN------------ 453 (614)
T ss_pred CCCeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccc------------
Confidence 35789999999999766 58999999999999999999999999999999999999999998754321
Q ss_pred ceEEEEecCC--CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHHHHHHhc
Q 016804 167 LRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSIIF 243 (382)
Q Consensus 167 ~~Ig~V~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaIArAL~~ 243 (382)
++++.-|+. .+--..++.|++.-.+ .. ....+.++.++.++||+ +....+.++||+|||.||.+|+.+++
T Consensus 454 -~~~~y~Qh~~e~ldl~~s~le~~~~~~---~~---~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~k 526 (614)
T KOG0927|consen 454 -KLPRYNQHLAEQLDLDKSSLEFMMPKF---PD---EKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVK 526 (614)
T ss_pred -cchhhhhhhHhhcCcchhHHHHHHHhc---cc---cchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhc
Confidence 355666653 2333467888875422 11 22345678899999998 56678889999999999999999997
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 244 ~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|.+|||||||+|||..+...+.+.|.++ .| ++|+||||...+.++++++
T Consensus 527 -------qP~lLlLDEPtnhLDi~tid~laeaiNe~--~G-----------gvv~vSHDfrlI~qVaeEi 576 (614)
T KOG0927|consen 527 -------QPHLLLLDEPTNHLDIETIDALAEAINEF--PG-----------GVVLVSHDFRLISQVAEEI 576 (614)
T ss_pred -------CCcEEEecCCCcCCCchhHHHHHHHHhcc--CC-----------ceeeeechhhHHHHHHHHh
Confidence 69999999999999999999999999887 23 7999999999999999999
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-28 Score=270.13 Aligned_cols=217 Identities=30% Similarity=0.439 Sum_probs=182.0
Q ss_pred eEEEEeEEEEe----CCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC--CccEEEECCEECCCCCChhhh
Q 016804 91 LIDCRNVYKSF----GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP--DKGEVYIRGRKRAGLISDEEI 164 (382)
Q Consensus 91 ~I~~~nvs~~y----g~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p--~sG~I~i~G~~i~~~~~~~~~ 164 (382)
+...+|+.+.- +.+++|+|||=-+++|-.+||+|+|||||||||++|+|-..- .+|+|+++|.+..+ ..
T Consensus 787 V~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q-----~t 861 (1391)
T KOG0065|consen 787 VFYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ-----ET 861 (1391)
T ss_pred eEEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch-----hh
Confidence 45566666555 457899999999999999999999999999999999997542 47999999987431 22
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhHhhc--CCCCHHHHHHHHHHHHHHcCCcccccCCCCC----CChHHHHHHHHH
Q 016804 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYEN--SKMRDEQISELVKENLAAVGLKGVEDRLPSE----LSGGMKKRVALA 238 (382)
Q Consensus 165 ~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~--~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~----LSGGqrQRVaIA 238 (382)
-++.+|||-|+....+.+||+|-+.|.+..+ ...+.++..+.++++++.++|+++.+..++. ||.+||+|+.||
T Consensus 862 F~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIg 941 (1391)
T KOG0065|consen 862 FARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIG 941 (1391)
T ss_pred hccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEE
Confidence 2346999999988789999999999987544 3355666678899999999999998888876 999999999999
Q ss_pred HHHhcCCCCCCCCC-cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHH-HHHHhhchhccc
Q 016804 239 RSIIFDNTKESVEP-EVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS-TIRRAVDRLCLF 316 (382)
Q Consensus 239 rAL~~~~~~~a~~P-~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~-~~~~~aDrv~~~ 316 (382)
--|+. +| .||+|||||||||..+...+++.+++++..| .||+.+-|+.+ .+.+.-||+
T Consensus 942 VELvA-------~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tG----------qtIlCTIHQPS~~ife~FD~L--- 1001 (1391)
T KOG0065|consen 942 VELVA-------NPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTG----------QTILCTIHQPSIDIFEAFDEL--- 1001 (1391)
T ss_pred EEEec-------CCceeEEecCCCCCccHHHHHHHHHHHHHHHhcC----------CeEEEEecCCcHHHHHHHhHH---
Confidence 99986 69 9999999999999999999999999999988 49999999874 445566777
Q ss_pred cccccchheehhccCCCCcccccccEEEEEeC-CeEEEEecccc
Q 016804 317 QIFGHIDVVIILGAVAPDKEVFFIYRLIFLYE-GKIVWQGMTHE 359 (382)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~-G~i~~~g~~~~ 359 (382)
++|++ |+.|..|+..+
T Consensus 1002 ---------------------------LLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 1002 ---------------------------LLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred ---------------------------HHHhcCCeEEEecCccc
Confidence 66654 89999997654
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.1e-28 Score=251.76 Aligned_cols=187 Identities=26% Similarity=0.379 Sum_probs=155.4
Q ss_pred cceEEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccc
Q 016804 89 DVLIDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~-~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~ 167 (382)
+..|+++||+..-++ +..|++.||+|++||.+-|.||||||||||+|+|+|++|--+|+|.+-.. .
T Consensus 390 ~~~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~-------------~ 456 (604)
T COG4178 390 DHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPAD-------------S 456 (604)
T ss_pred cceeEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCC-------------C
Confidence 456999999999965 67899999999999999999999999999999999999999998876411 1
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCC------CCCCChHHHHHHHHHHHH
Q 016804 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL------PSELSGGMKKRVALARSI 241 (382)
Q Consensus 168 ~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~------~~~LSGGqrQRVaIArAL 241 (382)
.+-|+||.|++... |.+|-|.++..... .+ ++.+.++|.++||.++.++. -..||+|||||+++||.|
T Consensus 457 ~~lflpQ~PY~p~G-tLre~l~YP~~~~~-~~----d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARil 530 (604)
T COG4178 457 ALLFLPQRPYLPQG-TLREALCYPNAAPD-FS----DAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLL 530 (604)
T ss_pred ceEEecCCCCCCCc-cHHHHHhCCCCCCC-CC----hHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHH
Confidence 47899999998775 99999988653221 33 34467889999998765553 268999999999999999
Q ss_pred hcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 242 ~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
++ +|++++|||.|++||+.++..+++++++-..+ +|||-|.|+-.. ..+.++.
T Consensus 531 L~-------kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~-----------~tvISV~Hr~tl-~~~h~~~ 583 (604)
T COG4178 531 LH-------KPKWVFLDEATSALDEETEDRLYQLLKEELPD-----------ATVISVGHRPTL-WNFHSRQ 583 (604)
T ss_pred Hc-------CCCEEEEecchhccChHHHHHHHHHHHhhCCC-----------CEEEEeccchhh-HHHHhhh
Confidence 97 79999999999999999999999998774332 699999998655 4555554
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-27 Score=243.51 Aligned_cols=213 Identities=26% Similarity=0.420 Sum_probs=156.4
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEEC--CEECCCCCChhhhccce
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR--GRKRAGLISDEEISGLR 168 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~--G~~i~~~~~~~~~~~~~ 168 (382)
-+.++|++++|.++.+++|++|++.+|+.+||+|||||||||+|++|.|-..|..=++-+. .+++.. +.. . -
T Consensus 75 dvk~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~p--s~~--~--a 148 (614)
T KOG0927|consen 75 DVKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEP--SEK--Q--A 148 (614)
T ss_pred cceeeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCC--chH--H--H
Confidence 3899999999999999999999999999999999999999999999999999865444332 222110 110 0 0
Q ss_pred EEEEec--------------CCCCC-CC--CCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChH
Q 016804 169 IGLVFQ--------------SAALF-DS--LTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGG 230 (382)
Q Consensus 169 Ig~V~Q--------------~~~l~-~~--lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGG 230 (382)
+-++++ +...+ +. .--.+++.. +...++.+..+.++.++|.-+|.. +..++....||||
T Consensus 149 v~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~---r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgG 225 (614)
T KOG0927|consen 149 VQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYE---RLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGG 225 (614)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHH---HHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCch
Confidence 111211 00000 00 000111110 111234445555666677777764 6888999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhh
Q 016804 231 MKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAV 310 (382)
Q Consensus 231 qrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~a 310 (382)
+|.|++|||||.. +|++|||||||++||+.+...+.+.|.+... .++++++|+.+++-.+|
T Consensus 226 wrmR~aLAr~Lf~-------kP~LLLLDEPtnhLDleA~~wLee~L~k~d~------------~~lVi~sh~QDfln~vC 286 (614)
T KOG0927|consen 226 WRMRAALARALFQ-------KPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR------------IILVIVSHSQDFLNGVC 286 (614)
T ss_pred HHHHHHHHHHHhc-------CCCEEEecCCccCCCHHHHHHHHHHHHhccC------------ceEEEEecchhhhhhHh
Confidence 9999999999997 6999999999999999999999999987632 27999999999999999
Q ss_pred chhccccccccchheehhccCCCCcccccccEEEEEeCCe-EEEEecccccc
Q 016804 311 DRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGK-IVWQGMTHEFT 361 (382)
Q Consensus 311 Drv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~-i~~~g~~~~~~ 361 (382)
.+| +.|++++ +.++|+-+++.
T Consensus 287 T~I------------------------------i~l~~kkl~~y~Gnydqy~ 308 (614)
T KOG0927|consen 287 TNI------------------------------IHLDNKKLIYYEGNYDQYV 308 (614)
T ss_pred hhh------------------------------heecccceeeecCCHHHHh
Confidence 998 8899998 66778666653
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-27 Score=239.59 Aligned_cols=189 Identities=30% Similarity=0.448 Sum_probs=151.6
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
+.+++-.+++|.||+. .|+-=.=+|..||+++++||||-||||+.++|+|.++|++|. ..+ .+
T Consensus 340 ~~lv~y~~~~k~~g~F-~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~------------~~ 402 (591)
T COG1245 340 DTLVEYPDLKKTYGDF-KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED------------LK 402 (591)
T ss_pred ceeeecchheeecCce-EEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc------------ce
Confidence 3457777788888743 344444457788999999999999999999999999999998 211 25
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~ 248 (382)
|+|=||--.--...||.+.+.-..... .... -.-.++++-++|++..++++.+|||||.|||+||.||.+
T Consensus 403 vSyKPQyI~~~~~gtV~~~l~~~~~~~--~~~s---~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~r----- 472 (591)
T COG1245 403 VSYKPQYISPDYDGTVEDLLRSAIRSA--FGSS---YFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSR----- 472 (591)
T ss_pred EeecceeecCCCCCcHHHHHHHhhhhh--cccc---hhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhcc-----
Confidence 899999654333479999886533211 1111 112467888999999999999999999999999999987
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcc
Q 016804 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCL 315 (382)
Q Consensus 249 a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~ 315 (382)
+++++|||||+|.||.+.+..+-+.|+++..+.+ +|.++|.||+-.+..++||++|
T Consensus 473 --eADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~---------kta~vVdHDi~~~dyvsDr~iv 528 (591)
T COG1245 473 --EADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNE---------KTALVVDHDIYMIDYVSDRLIV 528 (591)
T ss_pred --ccCEEEecCchhhccHHHHHHHHHHHHHHHhhcC---------ceEEEEecceehhhhhhceEEE
Confidence 6999999999999999999999999999987643 6999999999999999998833
|
|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.2e-27 Score=217.53 Aligned_cols=173 Identities=21% Similarity=0.230 Sum_probs=122.4
Q ss_pred eeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHH
Q 016804 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVR 185 (382)
Q Consensus 106 iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~ 185 (382)
.++++++++.+| +.+|+||||||||||+..|.-.+..... ....|.....+.... .....|.+.||+..+++
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~-~~~~~i~~~~~~~~~~~----- 82 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDG-ESSAKITVTLKNQGLDA----- 82 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCC-CCeEEEEEEEEcCCccC-----
Confidence 346778888887 8899999999999999999854433221 111232111110000 01225899999887775
Q ss_pred HHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCC
Q 016804 186 ENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265 (382)
Q Consensus 186 eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD 265 (382)
| . ... ..++.+.++++. .+..++++.+||+|||||++||+||+. ..+.+|+++||||||++||
T Consensus 83 -~---~------~~~-~~~~~~~~~l~~---~~~~~~~~~~lS~G~k~r~~ia~al~~---~~~~~p~illlDEP~~glD 145 (198)
T cd03276 83 -N---P------LCV-LSQDMARSFLTS---NKAAVRDVKTLSGGERSFSTVCLLLSL---WEVMESPFRCLDEFDVFMD 145 (198)
T ss_pred -C---c------CCH-HHHHHHHHHhcc---ccccCCcccccChhHHHHHHHHHHHHH---hcccCCCEEEecCcccccC
Confidence 1 0 111 113446666766 666788999999999999999999941 0002699999999999999
Q ss_pred HHHHHHHHHHHHHHHHc--CCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 266 PIASTVVEDLIRSVHKK--GENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 266 ~~~~~~l~~lL~~l~~~--g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+..+..+.+.|+++.++ +. .|+|++||+++.+.++ |||
T Consensus 146 ~~~~~~~~~~l~~~~~~~~~~---------~~iii~th~~~~i~~~-d~v 185 (198)
T cd03276 146 MVNRKISTDLLVKEAKKQPGR---------QFIFITPQDISGLASS-DDV 185 (198)
T ss_pred HHHHHHHHHHHHHHHhcCCCc---------EEEEEECCcccccccc-cce
Confidence 99999999999998654 21 4899999999999876 877
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-27 Score=226.12 Aligned_cols=197 Identities=19% Similarity=0.223 Sum_probs=128.0
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEE-CCCCCCh--hhhccce
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK-RAGLISD--EEISGLR 168 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~-i~~~~~~--~~~~~~~ 168 (382)
|+++|. ++|.+...++ ..++ +++|+||||||||||+++|++++.++.|+++..+.+ +...... .......
T Consensus 4 i~l~nf-~~~~~~~~~~-----~~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~ 76 (247)
T cd03275 4 LELENF-KSYKGRHVIG-----PFDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAY 76 (247)
T ss_pred EEEECc-cccCCCeeec-----CCCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEE
Confidence 678886 6776443332 2344 999999999999999999999998888888765421 1000000 0001113
Q ss_pred EEEEe--cCCCC-CCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc--------------ccc--------CC
Q 016804 169 IGLVF--QSAAL-FDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG--------------VED--------RL 223 (382)
Q Consensus 169 Ig~V~--Q~~~l-~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~--------------~~~--------~~ 223 (382)
|..+| |++.. +-..++.+.... . ...+ .....+.+.++++.+|+.. ..+ ++
T Consensus 77 v~~~f~~~~~~~~~~~~~~~~~~~~-~-~ing--k~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~ 152 (247)
T cd03275 77 VTAVYEDDDGEEKTFRRIITGGSSS-Y-RING--KVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRD 152 (247)
T ss_pred EEEEEEcCCCcEEEEEEEEECCceE-E-EECC--EEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhh
Confidence 44444 43321 111222222111 0 0111 1112334567888888842 222 33
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCH
Q 016804 224 PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQH 303 (382)
Q Consensus 224 ~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl 303 (382)
+.+||+|||||++||||++.++ ..+|+++||||||++||+..+..+.+.|++++++| .++|+|||+.
T Consensus 153 ~~~LS~G~k~rl~la~al~~~~---~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g----------~~vi~isH~~ 219 (247)
T cd03275 153 MDNLSGGEKTMAALALLFAIHS---YQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPN----------FQFIVISLKE 219 (247)
T ss_pred HHHcCHHHHHHHHHHHHHHHhc---cCCCCEEEEecccccCCHHHHHHHHHHHHHhccCC----------cEEEEEECCH
Confidence 4899999999999999998410 01389999999999999999999999999997665 5999999997
Q ss_pred HHHHHhhchh
Q 016804 304 STIRRAVDRL 313 (382)
Q Consensus 304 ~~~~~~aDrv 313 (382)
+.+ ..|||+
T Consensus 220 ~~~-~~~d~i 228 (247)
T cd03275 220 EFF-SKADAL 228 (247)
T ss_pred HHH-hhCCeE
Confidence 665 679988
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-26 Score=251.42 Aligned_cols=127 Identities=29% Similarity=0.379 Sum_probs=103.1
Q ss_pred CCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc-cccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCC
Q 016804 182 LTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEP 260 (382)
Q Consensus 182 lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~-~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEP 260 (382)
+||.|.+.|.... . .+. ...++|+.+||.. .+++++.+|||||+||++||++|+++ ..+|+++|||||
T Consensus 790 ~tv~e~~~f~~~~----~--~i~-~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~----~~~p~llILDEP 858 (924)
T TIGR00630 790 MTVEEAYEFFEAV----P--SIS-RKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKR----STGRTLYILDEP 858 (924)
T ss_pred CcHHHHHHHHHhc----c--chh-HHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhc----CCCCCEEEEECC
Confidence 5666766664211 1 111 2457899999975 47899999999999999999999852 125999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccCCCCcccccc
Q 016804 261 TAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFI 340 (382)
Q Consensus 261 tagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (382)
|+|||+..+..++++|+++.++| .|+|++||+++.+. .||++
T Consensus 859 tsgLD~~~~~~L~~~L~~l~~~G----------~TVIvi~H~~~~i~-~aD~i--------------------------- 900 (924)
T TIGR00630 859 TTGLHFDDIKKLLEVLQRLVDQG----------NTVVVIEHNLDVIK-TADYI--------------------------- 900 (924)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHH-hCCEE---------------------------
Confidence 99999999999999999998776 49999999999885 58877
Q ss_pred cEEEEE------eCCeEEEEeccccc
Q 016804 341 YRLIFL------YEGKIVWQGMTHEF 360 (382)
Q Consensus 341 ~~ii~l------~~G~i~~~g~~~~~ 360 (382)
++| ++|+|++.|+++++
T Consensus 901 ---i~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 901 ---IDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred ---EEecCCccCCCCEEEEeCCHHHh
Confidence 999 79999999977654
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.2e-27 Score=238.30 Aligned_cols=184 Identities=25% Similarity=0.373 Sum_probs=140.1
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
-|.+.+.+..||++.+|.+-++++..|..+||+|+||+|||||||+|+. |+|.....+ ++.. =-
T Consensus 80 Di~~~~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~ve-------qE~~---g~ 143 (582)
T KOG0062|consen 80 DIHIDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVE-------QEVR---GD 143 (582)
T ss_pred ceeeeeeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCch-------hhee---cc
Confidence 3889999999999999999999999999999999999999999999997 666554432 1111 11
Q ss_pred EEecC-CCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 016804 171 LVFQS-AALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (382)
Q Consensus 171 ~V~Q~-~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~ 248 (382)
+++-. ..+-..+++.+.+..-....... ...+...++|.-+|.+ +...++..+||||.|.|++|||||.+
T Consensus 144 ~t~~~~~~l~~D~~~~dfl~~e~~l~~~~---~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~----- 215 (582)
T KOG0062|consen 144 DTEALQSVLESDTERLDFLAEEKELLAGL---TLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFA----- 215 (582)
T ss_pred chHHHhhhhhccHHHHHHHHhhhhhhccc---hHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhc-----
Confidence 22211 12233344444443221101111 2233344488899997 46677889999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 249 a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|+||||||||+.||..+...+.+.|..+. .|+|+||||-+++-..|..|
T Consensus 216 --~pDlLLLDEPTNhLDv~av~WLe~yL~t~~-------------~T~liVSHDr~FLn~V~tdI 265 (582)
T KOG0062|consen 216 --KPDLLLLDEPTNHLDVVAVAWLENYLQTWK-------------ITSLIVSHDRNFLNTVCTDI 265 (582)
T ss_pred --CCCEEeecCCcccchhHHHHHHHHHHhhCC-------------ceEEEEeccHHHHHHHHHHH
Confidence 699999999999999999999999998763 39999999999999999988
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7e-26 Score=230.62 Aligned_cols=198 Identities=26% Similarity=0.354 Sum_probs=163.5
Q ss_pred CcceEEEEeEEEEeCCe--eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhc
Q 016804 88 GDVLIDCRNVYKSFGEK--HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165 (382)
Q Consensus 88 ~~~~I~~~nvs~~yg~~--~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~ 165 (382)
..|.+++.+|+|.|... +.+.+++++++.-+.++++|+||+||||++|++.|-..|.+|.+.+.+
T Consensus 359 ~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~------------- 425 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP------------- 425 (582)
T ss_pred CCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-------------
Confidence 44789999999999654 499999999999999999999999999999999999999999887764
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHHHHHHhcC
Q 016804 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSIIFD 244 (382)
Q Consensus 166 ~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaIArAL~~~ 244 (382)
+++|+|-+|+..=+-.++|-. +.+....+.+.. ++.++..|..+||+ +...+....||||||-||++|.+...
T Consensus 426 r~ri~~f~Qhhvd~l~~~v~~-vd~~~~~~pG~~----~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~- 499 (582)
T KOG0062|consen 426 RLRIKYFAQHHVDFLDKNVNA-VDFMEKSFPGKT----EEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWN- 499 (582)
T ss_pred cceecchhHhhhhHHHHHhHH-HHHHHHhCCCCC----HHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcC-
Confidence 237999999754222233322 222222233333 44567789999997 46666689999999999999999986
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchh
Q 016804 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDV 324 (382)
Q Consensus 245 ~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~ 324 (382)
+|.+|+|||||+.||..+...+-+.|+.+. | .||+||||.+++...|+.+
T Consensus 500 ------~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~--G-----------GVv~VSHd~~fi~~~c~E~----------- 549 (582)
T KOG0062|consen 500 ------NPHLLVLDEPTNHLDRDSLGALAKALKNFN--G-----------GVVLVSHDEEFISSLCKEL----------- 549 (582)
T ss_pred ------CCcEEEecCCCccccHHHHHHHHHHHHhcC--C-----------cEEEEECcHHHHhhcCcee-----------
Confidence 699999999999999999999999998873 3 5999999999999999988
Q ss_pred eehhccCCCCcccccccEEEEEeCCeEEE
Q 016804 325 VIILGAVAPDKEVFFIYRLIFLYEGKIVW 353 (382)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~ii~l~~G~i~~ 353 (382)
|+.++|++..
T Consensus 550 -------------------Wvve~g~vt~ 559 (582)
T KOG0062|consen 550 -------------------WVVEDGKVTP 559 (582)
T ss_pred -------------------EEEcCCcEEe
Confidence 9999999965
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-25 Score=224.87 Aligned_cols=186 Identities=31% Similarity=0.474 Sum_probs=151.6
Q ss_pred CCCCCCcceEEEEeEEEEe-CCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCCh
Q 016804 83 EPEDDGDVLIDCRNVYKSF-GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD 161 (382)
Q Consensus 83 ~~~~~~~~~I~~~nvs~~y-g~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~ 161 (382)
+|+.-..|++-+.||+|.| |.++.+.+++|-|.--..+|||||||.||||||++|.|-+.|+.|+.+=+-
T Consensus 578 ep~~L~PPvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh--------- 648 (807)
T KOG0066|consen 578 EPTKLNPPVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH--------- 648 (807)
T ss_pred CCCCCCCCeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccc---------
Confidence 3444566899999999999 567899999999999999999999999999999999999999999875432
Q ss_pred hhhccceEEEEecCCC--CCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCccccc-CCCCCCChHHHHHHHHH
Q 016804 162 EEISGLRIGLVFQSAA--LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVED-RLPSELSGGMKKRVALA 238 (382)
Q Consensus 162 ~~~~~~~Ig~V~Q~~~--l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~-~~~~~LSGGqrQRVaIA 238 (382)
+++||+.-|+.. |-..-|..|++.-.+ ..+. +.++..|-.+||...++ -.+..|||||+-||++|
T Consensus 649 ----rL~iG~FdQh~~E~L~~Eetp~EyLqr~F----Nlpy----q~ARK~LG~fGL~sHAHTikikdLSGGQKaRVala 716 (807)
T KOG0066|consen 649 ----RLRIGWFDQHANEALNGEETPVEYLQRKF----NLPY----QEARKQLGTFGLASHAHTIKIKDLSGGQKARVALA 716 (807)
T ss_pred ----eeeeechhhhhHHhhccccCHHHHHHHhc----CCCh----HHHHHHhhhhhhhhccceEeeeecCCcchHHHHHH
Confidence 347999999863 555567777764322 2333 33567899999975544 35789999999999999
Q ss_pred HHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHh
Q 016804 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA 309 (382)
Q Consensus 239 rAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~ 309 (382)
-.-+. .|+||||||||++||.++...+-+.|+++. | .|||||||-..+.+.
T Consensus 717 eLal~-------~PDvlILDEPTNNLDIESIDALaEAIney~--G-----------gVi~VsHDeRLi~eT 767 (807)
T KOG0066|consen 717 ELALG-------GPDVLILDEPTNNLDIESIDALAEAINEYN--G-----------GVIMVSHDERLIVET 767 (807)
T ss_pred HHhcC-------CCCEEEecCCCCCcchhhHHHHHHHHHhcc--C-----------cEEEEecccceeeec
Confidence 87765 699999999999999999999999998873 3 699999998776553
|
|
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-24 Score=221.27 Aligned_cols=193 Identities=23% Similarity=0.306 Sum_probs=153.0
Q ss_pred cceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhcc
Q 016804 89 DVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~ 166 (382)
+.+|++++|+..-++ ..+++|+||+|+.|+-+-|.||||||||+|+|.++|||+-.+|++.--.+.- .
T Consensus 431 Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~-----~----- 500 (659)
T KOG0060|consen 431 DNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGG-----P----- 500 (659)
T ss_pred cceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCC-----C-----
Confidence 467999999999865 4578889999999999999999999999999999999999999998654320 0
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCC-----------CCCCChHHHHHH
Q 016804 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL-----------PSELSGGMKKRV 235 (382)
Q Consensus 167 ~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~-----------~~~LSGGqrQRV 235 (382)
..+-||||.|++-.+ |.+|.|.++........+....+.+.+.|+.++|.+...+. ...||+|||||+
T Consensus 501 ~~lfflPQrPYmt~G-TLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRL 579 (659)
T KOG0060|consen 501 KDLFFLPQRPYMTLG-TLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRL 579 (659)
T ss_pred CceEEecCCCCcccc-chhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHH
Confidence 147899999997665 99999998753222222222234566677777776544433 268999999999
Q ss_pred HHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 236 ALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 236 aIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
++||-+.+ +|++-+|||-||++|...+..+.+.+++. | +|.|-|+|+-+.-. +-|.+
T Consensus 580 a~ARLfy~-------kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~---g----------iT~iSVgHRkSL~k-fHd~~ 636 (659)
T KOG0060|consen 580 AFARLFYH-------KPKFAILDECTSAVTEDVEGALYRKCREM---G----------ITFISVGHRKSLWK-FHDYV 636 (659)
T ss_pred HHHHHHhc-------CCceEEeechhhhccHHHHHHHHHHHHHc---C----------CeEEEeccHHHHHh-hhhEE
Confidence 99999996 79999999999999999998888877664 4 69999999987765 44533
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-23 Score=194.08 Aligned_cols=136 Identities=19% Similarity=0.304 Sum_probs=101.7
Q ss_pred eeeEeeeEEEeCCc-EEEEEcCCCccHHHHHHHHH--------cCCCCCccEEEECCEECCCCCChhhhccceEEEEecC
Q 016804 105 HILRGVSFKIRHGE-AVGIIGPSGTGKSTILKIIA--------GLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQS 175 (382)
Q Consensus 105 ~iL~~vsl~i~~Ge-~vaLiGpNGaGKSTLLklI~--------Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~ 175 (382)
+.+-++||++.+|+ +++|.||||||||||||+|+ |+.-|....+ .++|+.|.
T Consensus 15 ~~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~-------------------~~~~~~~~ 75 (200)
T cd03280 15 EKVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS-------------------SLPVFENI 75 (200)
T ss_pred CceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc-------------------cCcCccEE
Confidence 34668999999995 79999999999999999998 4433321000 13333332
Q ss_pred CCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEE
Q 016804 176 AALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVL 255 (382)
Q Consensus 176 ~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iL 255 (382)
.. .++..+..++..+++|+||||++.|++++. +|+++
T Consensus 76 ~~-----------------------------------~lg~~~~l~~~~s~fs~g~~~~~~i~~~~~--------~p~ll 112 (200)
T cd03280 76 FA-----------------------------------DIGDEQSIEQSLSTFSSHMKNIARILQHAD--------PDSLV 112 (200)
T ss_pred EE-----------------------------------ecCchhhhhcCcchHHHHHHHHHHHHHhCC--------CCcEE
Confidence 11 111222344556799999999999999874 59999
Q ss_pred EEeCCCCCCCHHHHHHHH-HHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 256 LYDEPTAGLDPIASTVVE-DLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 256 LLDEPtagLD~~~~~~l~-~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
|+||||+|||+..+..+. .+++++.+.+ .++|++||+. .+..+||++
T Consensus 113 llDEp~~glD~~~~~~i~~~~l~~l~~~~----------~~vi~~tH~~-~l~~~~d~~ 160 (200)
T cd03280 113 LLDELGSGTDPVEGAALAIAILEELLERG----------ALVIATTHYG-ELKAYAYKR 160 (200)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHHhcC----------CEEEEECCHH-HHHHHHhcC
Confidence 999999999999999986 5788887665 5999999984 566788888
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.2e-23 Score=188.80 Aligned_cols=208 Identities=21% Similarity=0.293 Sum_probs=160.2
Q ss_pred CcceEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhcc
Q 016804 88 GDVLIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (382)
Q Consensus 88 ~~~~I~~~nvs~~yg-~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~ 166 (382)
++..|++.++.|+|. ..+++-|+|++++.|...-+||.||||||||||+|+|---.-.|.|.+.|++.-.-..-. ..
T Consensus 10 ~~~aievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~--~S 87 (291)
T KOG2355|consen 10 SDFAIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLE--SS 87 (291)
T ss_pred ccceEEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCcccccccc--cc
Confidence 345699999999995 468999999999999999999999999999999999987777799999998642210000 11
Q ss_pred ceEEEEec----------CCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHH
Q 016804 167 LRIGLVFQ----------SAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVA 236 (382)
Q Consensus 167 ~~Ig~V~Q----------~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVa 236 (382)
-...|+-- +..+--.+++.+.| |+. .+.+. ++-+++++.++++ +..+.+.+|-|||+||.
T Consensus 88 gdl~YLGgeW~~~~~~agevplq~D~sae~mi-fgV---~g~dp----~Rre~LI~iLDId--l~WRmHkvSDGqrRRVQ 157 (291)
T KOG2355|consen 88 GDLSYLGGEWSKTVGIAGEVPLQGDISAEHMI-FGV---GGDDP----ERREKLIDILDID--LRWRMHKVSDGQRRRVQ 157 (291)
T ss_pred CceeEecccccccccccccccccccccHHHHH-hhc---cCCCh----hHhhhhhhheecc--ceEEEeeccccchhhhH
Confidence 12344332 22222346666555 433 12222 2234566776665 45667899999999999
Q ss_pred HHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccc
Q 016804 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLF 316 (382)
Q Consensus 237 IArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~ 316 (382)
|++.|++ .=++|||||-|-.||..++..+++.+++-+++.+ +||++.||-.+-.+....++
T Consensus 158 icMGLL~-------PfkVLLLDEVTVDLDVlARadLLeFlkeEce~Rg---------atIVYATHIFDGLe~Wpthl--- 218 (291)
T KOG2355|consen 158 ICMGLLK-------PFKVLLLDEVTVDLDVLARADLLEFLKEECEQRG---------ATIVYATHIFDGLETWPTHL--- 218 (291)
T ss_pred HHHhccc-------ceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcC---------cEEEEEeeeccchhhcchhE---
Confidence 9999997 3699999999999999999999999999877632 79999999999999998877
Q ss_pred cccccchheehhccCCCCcccccccEEEEEeCCeEEE
Q 016804 317 QIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVW 353 (382)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~ 353 (382)
+.|+.|+++-
T Consensus 219 ---------------------------~yi~~Gkl~~ 228 (291)
T KOG2355|consen 219 ---------------------------VYIKSGKLVD 228 (291)
T ss_pred ---------------------------EEecCCeeee
Confidence 8899999986
|
|
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.4e-23 Score=192.97 Aligned_cols=182 Identities=20% Similarity=0.215 Sum_probs=107.9
Q ss_pred eEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHH
Q 016804 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRE 186 (382)
Q Consensus 107 L~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~e 186 (382)
++++.+++.+| +.+|+|||||||||||..|.-.+-...... ........+.... .....|-..++...- .=..+
T Consensus 14 ~~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~-~r~~~~~~~i~~g-~~~~~v~~~~~~~~~---~~~~~ 87 (213)
T cd03277 14 YDETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLL-GRAKKVGEFVKRG-CDEGTIEIELYGNPG---NIQVD 87 (213)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCcccc-ccccCHHHHhhCC-CCcEEEEEEEEeCCC---ccccC
Confidence 34566666665 778999999999999999877653222100 0110000000000 000123333333210 00112
Q ss_pred HHHhhHh-----hcCCCCHHHHHHHHHHHHHHcCC-cccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCC
Q 016804 187 NVGFLLY-----ENSKMRDEQISELVKENLAAVGL-KGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEP 260 (382)
Q Consensus 187 ni~~~~~-----~~~~~~~~~~~~~v~~~L~~~gL-~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEP 260 (382)
|+.+... ....+.+. +.+..++. .+..+..+.+||+|||||+.+|++|+.. ...+|+++|+|||
T Consensus 88 n~~~~~~q~~~~~~~~~~~~-------e~l~~~~~~~~~~~~~~~~LS~G~~q~~~i~~~la~~---~~~~p~llllDEP 157 (213)
T cd03277 88 NLCQFLPQDRVGEFAKLSPI-------ELLVKFREGEQLQELDPHHQSGGERSVSTMLYLLSLQ---ELTRCPFRVVDEI 157 (213)
T ss_pred CceEEEchHHHHHHHhCChH-------hHheeeecCCCccccchhhccccHHHHHHHHHHHHHH---hccCCCEEEEecc
Confidence 2211000 00001111 22223322 2345678899999999999888665310 0126999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 261 TAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 261 tagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
|++||+..+..+++.|.++.++ |. .|+|++||++..+...||++
T Consensus 158 ~~~LD~~~~~~i~~~l~~~~~~~g~---------~~viiith~~~~~~~~~~~~ 202 (213)
T cd03277 158 NQGMDPTNERKVFDMLVETACKEGT---------SQYFLITPKLLPGLNYHEKM 202 (213)
T ss_pred cccCCHHHHHHHHHHHHHHhhcCCC---------ceEEEEchhhccCCcccCce
Confidence 9999999999999999999765 42 47999999999999999987
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=7e-23 Score=206.55 Aligned_cols=189 Identities=31% Similarity=0.412 Sum_probs=137.4
Q ss_pred eEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEE-----------CCEECCCCCChhh
Q 016804 96 NVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI-----------RGRKRAGLISDEE 163 (382)
Q Consensus 96 nvs~~yg~-~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i-----------~G~~i~~~~~~~~ 163 (382)
++..+||. ...|.++- ..++|.++||+||||-||||-+|+|+|-+.|.=|+..= .|.++..+-..-.
T Consensus 79 e~vHRYg~NgFkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~ 157 (591)
T COG1245 79 EVVHRYGVNGFKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLY 157 (591)
T ss_pred cceeeccCCceEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHH
Confidence 57788974 23444443 26789999999999999999999999999998664310 1111000000000
Q ss_pred hccceEEEEecC----CCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHH
Q 016804 164 ISGLRIGLVFQS----AALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALAR 239 (382)
Q Consensus 164 ~~~~~Ig~V~Q~----~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIAr 239 (382)
-...++..=+|- |..+. -+|.|-+.-. ++ .....++.++++|+...+|-+++|||||.||+|||.
T Consensus 158 ~g~~r~v~K~QYVd~iPk~~K-G~v~elLk~~-------de---~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa 226 (591)
T COG1245 158 EGELRAVHKPQYVDLIPKVVK-GKVGELLKKV-------DE---RGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAA 226 (591)
T ss_pred cCCcceecchHHHHHHHHHhc-chHHHHHHhh-------hh---cCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHH
Confidence 001123333342 22333 2566555321 11 123567899999999999999999999999999999
Q ss_pred HHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 240 AL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
|+++ +++++++|||||-||...+-.+-+++++|.+.+ ++||+|.|||..+.-++|-|
T Consensus 227 ~l~r-------dADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~----------k~ViVVEHDLavLD~lsD~v 283 (591)
T COG1245 227 ALLR-------DADVYFFDEPSSYLDIRQRLNAARVIRELAEDG----------KYVIVVEHDLAVLDYLSDFV 283 (591)
T ss_pred HHhc-------cCCEEEEcCCcccccHHHHHHHHHHHHHHhccC----------CeEEEEechHHHHHHhhhee
Confidence 9998 599999999999999999999999999999875 49999999999999999977
|
|
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.8e-22 Score=185.66 Aligned_cols=141 Identities=18% Similarity=0.220 Sum_probs=108.1
Q ss_pred CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCC
Q 016804 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSL 182 (382)
Q Consensus 103 ~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~l 182 (382)
++.+++|++|+. |++++|+||||||||||+|+|+|... +...|.++.. -.+++|...+|+.+
T Consensus 13 ~~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a-----------~~~~~q~~~l~~~~ 74 (199)
T cd03283 13 EKRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCA-----------SSFELPPVKIFTSI 74 (199)
T ss_pred CCeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEec-----------CccCcccceEEEec
Confidence 356888887765 79999999999999999999988553 2235654321 13677866789999
Q ss_pred CHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCC
Q 016804 183 TVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA 262 (382)
Q Consensus 183 TV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPta 262 (382)
|+.||+.++... ...+. +++.++++.+++ . +|+++|+||||+
T Consensus 75 ~~~d~l~~~~s~----~~~e~-~~~~~iL~~~~~--------------------------~-------~p~llllDEp~~ 116 (199)
T cd03283 75 RVSDDLRDGISY----FYAEL-RRLKEIVEKAKK--------------------------G-------EPVLFLLDEIFK 116 (199)
T ss_pred cchhccccccCh----HHHHH-HHHHHHHHhccC--------------------------C-------CCeEEEEecccC
Confidence 999999886421 12333 557788888773 3 599999999999
Q ss_pred CCCHHHHHHHH-HHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHh
Q 016804 263 GLDPIASTVVE-DLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA 309 (382)
Q Consensus 263 gLD~~~~~~l~-~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~ 309 (382)
|+|+..+..+. .+++++.+.+ .|+|++||+++.+...
T Consensus 117 glD~~~~~~l~~~ll~~l~~~~----------~tiiivTH~~~~~~~~ 154 (199)
T cd03283 117 GTNSRERQAASAAVLKFLKNKN----------TIGIISTHDLELADLL 154 (199)
T ss_pred CCCHHHHHHHHHHHHHHHHHCC----------CEEEEEcCcHHHHHhh
Confidence 99999988765 5788887655 5999999999998765
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.1e-22 Score=218.18 Aligned_cols=206 Identities=28% Similarity=0.413 Sum_probs=167.0
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC---CccEEEECCEECCCCCChhhhccceEEEEecCCCCCC
Q 016804 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP---DKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFD 180 (382)
Q Consensus 104 ~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p---~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~ 180 (382)
..+|+|+|.-+++|+.+-++||.||||||||+.++|-++- ..|+|.+||.+...... +..++|++|+...++
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~-----~~~~aY~~e~DvH~p 202 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP-----KKTVAYNSEQDVHFP 202 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc-----CceEEeccccccccc
Confidence 4799999999999999999999999999999999998764 35799999998654322 336999999999999
Q ss_pred CCCHHHHHHhhHhhcCC------CCHHHH-HHHHHHHHHHcCCcccccCC-----CCCCChHHHHHHHHHHHHhcCCCCC
Q 016804 181 SLTVRENVGFLLYENSK------MRDEQI-SELVKENLAAVGLKGVEDRL-----PSELSGGMKKRVALARSIIFDNTKE 248 (382)
Q Consensus 181 ~lTV~eni~~~~~~~~~------~~~~~~-~~~v~~~L~~~gL~~~~~~~-----~~~LSGGqrQRVaIArAL~~~~~~~ 248 (382)
.|||+|-+.|.++.... ..+.+. ....+.+++.+||+.-.|.. .+..|||||+||++|-+++.
T Consensus 203 ~lTVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~----- 277 (1391)
T KOG0065|consen 203 ELTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVG----- 277 (1391)
T ss_pred eeEEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeec-----
Confidence 99999999997753221 222221 12456899999998655554 57899999999999999996
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCH-HHHHHhhchhccccccccchheeh
Q 016804 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQH-STIRRAVDRLCLFQIFGHIDVVII 327 (382)
Q Consensus 249 a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl-~~~~~~aDrv~~~~~~~~~~~~~~ 327 (382)
+++++.+||+|.|||..+.-++.+.|+++....+ .|.+++-|+. .++..+-
T Consensus 278 --~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~---------~t~~vsi~Q~s~~~~~lF----------------- 329 (1391)
T KOG0065|consen 278 --PASILFWDEITRGLDSSTAFQIIKALRQLAHITG---------ATALVSILQPSPEIYDLF----------------- 329 (1391)
T ss_pred --CcceeeeecccccccHHHHHHHHHHHHHHHhhhc---------ceEEEEeccCChHHHHhh-----------------
Confidence 6999999999999999999999999999987632 4777777753 3333443
Q ss_pred hccCCCCcccccccEEEEEeCCeEEEEeccccc
Q 016804 328 LGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEF 360 (382)
Q Consensus 328 ~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~ 360 (382)
|.|++|.+|+++.+|+.++.
T Consensus 330 -------------D~v~lL~eG~~iy~Gp~d~~ 349 (1391)
T KOG0065|consen 330 -------------DDVILLSEGYQIYQGPRDEV 349 (1391)
T ss_pred -------------hheeeeeccceEEeccHHHH
Confidence 56699999999999987764
|
|
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.8e-21 Score=172.82 Aligned_cols=73 Identities=32% Similarity=0.461 Sum_probs=63.2
Q ss_pred CChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHH
Q 016804 227 LSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTI 306 (382)
Q Consensus 227 LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~ 306 (382)
||+|||||++|||+|+.. ...+|+++|+|||+++||+..+..+.+.|.++.+++ .|+|++||+.+.+
T Consensus 95 LS~Ge~~r~~Laral~~~---~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g----------~tiIiiSH~~~~~ 161 (178)
T cd03239 95 LSGGEKSLSALALIFALQ---EIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHT----------SQFIVITLKKEMF 161 (178)
T ss_pred CCHHHHHHHHHHHHHHHh---cCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCC----------CEEEEEECCHHHH
Confidence 999999999999999620 002699999999999999999999999999997665 5999999999877
Q ss_pred HHhhchh
Q 016804 307 RRAVDRL 313 (382)
Q Consensus 307 ~~~aDrv 313 (382)
. .+||+
T Consensus 162 ~-~adrv 167 (178)
T cd03239 162 E-NADKL 167 (178)
T ss_pred h-hCCeE
Confidence 5 78887
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-21 Score=200.07 Aligned_cols=184 Identities=24% Similarity=0.292 Sum_probs=142.9
Q ss_pred eEEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 91 LIDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 91 ~I~~~nvs~~yg~-~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
-|.++||-.--+. ..++..++|+|++|-.+-|+||||||||+|+|+|.||||...|...+- ...++
T Consensus 481 gI~lenIpvItP~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P-------------~~~~m 547 (728)
T KOG0064|consen 481 GIILENIPVITPAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIP-------------RPNNI 547 (728)
T ss_pred ceEEecCceeccCcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecC-------------CCcce
Confidence 3888998877754 457899999999999999999999999999999999999876655431 11258
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHh----hcCCCCHHHHHHHHHHHHHHcCCcccccCCC---------CCCChHHHHHHH
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLY----ENSKMRDEQISELVKENLAAVGLKGVEDRLP---------SELSGGMKKRVA 236 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~----~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~---------~~LSGGqrQRVa 236 (382)
-|+||.|++- .-|.+|.|-++-. ..++..++ ....+|+.+.|+..+.+-. ..||||||||++
T Consensus 548 FYIPQRPYms-~gtlRDQIIYPdS~e~~~~kg~~d~----dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~ 622 (728)
T KOG0064|consen 548 FYIPQRPYMS-GGTLRDQIIYPDSSEQMKRKGYTDQ----DLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMG 622 (728)
T ss_pred EeccCCCccC-cCcccceeecCCcHHHHHhcCCCHH----HHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHH
Confidence 9999999976 4588998877531 11223332 3556677777765554433 579999999999
Q ss_pred HHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 237 IArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+||.+.+ +|+..+|||-|++..+..+..+.+..+.. | .+.|-|||+.+.... -.++
T Consensus 623 mARm~yH-------rPkyalLDEcTsAvsidvE~~i~~~ak~~---g----------i~llsithrpslwk~-h~~l 678 (728)
T KOG0064|consen 623 MARMFYH-------RPKYALLDECTSAVSIDVEGKIFQAAKDA---G----------ISLLSITHRPSLWKY-HTHL 678 (728)
T ss_pred HHHHHhc-------CcchhhhhhhhcccccchHHHHHHHHHhc---C----------ceEEEeecCccHHHH-HHHH
Confidence 9999997 69999999999999999888877766543 4 699999999988754 3444
|
|
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.3e-21 Score=190.74 Aligned_cols=168 Identities=30% Similarity=0.432 Sum_probs=134.7
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC--------CCCCccEEEECCEECCCCCChhhhccceEEEEecC
Q 016804 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--------LAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQS 175 (382)
Q Consensus 104 ~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl--------~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~ 175 (382)
..+|+|+||+|++|++++|+|+|||||||||++|+|. ++||+|.|.+--..+ -+++|-+
T Consensus 396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~-------------~a~iPge 462 (593)
T COG2401 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTV-------------SALIPGE 462 (593)
T ss_pred eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccch-------------hhccCcc
Confidence 4689999999999999999999999999999999997 578999988743221 1345543
Q ss_pred CC-CCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc--cccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCC
Q 016804 176 AA-LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG--VEDRLPSELSGGMKKRVALARSIIFDNTKESVEP 252 (382)
Q Consensus 176 ~~-l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~--~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P 252 (382)
.. -|...|+.|.+.-- . .+. ..+.++|.++|+.+ +..+.+++||-|||.|+.||+++.. .|
T Consensus 463 ~Ep~f~~~tilehl~s~----t-GD~----~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllae-------rp 526 (593)
T COG2401 463 YEPEFGEVTILEHLRSK----T-GDL----NAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAE-------RP 526 (593)
T ss_pred cccccCchhHHHHHhhc----c-Cch----hHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhc-------CC
Confidence 21 14355777766321 1 111 12457899999975 5677889999999999999999986 69
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHh
Q 016804 253 EVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA 309 (382)
Q Consensus 253 ~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~ 309 (382)
.+++.||-.|.||+.+...+..-|.+++++-+ .|++++||+.+....+
T Consensus 527 n~~~iDEF~AhLD~~TA~rVArkiselaRe~g---------iTlivvThrpEv~~AL 574 (593)
T COG2401 527 NVLLIDEFAAHLDELTAVRVARKISELAREAG---------ITLIVVTHRPEVGNAL 574 (593)
T ss_pred CcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhC---------CeEEEEecCHHHHhcc
Confidence 99999999999999999999999999987742 7999999999888776
|
|
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.8e-20 Score=180.06 Aligned_cols=73 Identities=21% Similarity=0.297 Sum_probs=61.4
Q ss_pred CCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHH
Q 016804 226 ELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHST 305 (382)
Q Consensus 226 ~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~ 305 (382)
.|||||+||++||++++.-. ..+|+++|+||||++||+..+..+.+.|+++.+ + .|+|++||+++.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~---~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~----------~tii~isH~~~~ 235 (276)
T cd03241 170 IASGGELSRLMLALKAILAR---KDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-S----------HQVLCITHLPQV 235 (276)
T ss_pred hcChhHHHHHHHHHHHHHhc---CCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-C----------CEEEEEechHHH
Confidence 39999999999999765300 015999999999999999999999999999865 3 499999999985
Q ss_pred HHHhhchh
Q 016804 306 IRRAVDRL 313 (382)
Q Consensus 306 ~~~~aDrv 313 (382)
..+||++
T Consensus 236 -~~~~d~~ 242 (276)
T cd03241 236 -AAMADNH 242 (276)
T ss_pred -HHhcCcE
Confidence 4688877
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-21 Score=196.42 Aligned_cols=203 Identities=25% Similarity=0.383 Sum_probs=148.8
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC--CCCCccEEEECCEECCCCCChh-h----
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--LAPDKGEVYIRGRKRAGLISDE-E---- 163 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl--~~p~sG~I~i~G~~i~~~~~~~-~---- 163 (382)
-|.++|.+.+-.++..+.+.||.|-.|..+|||||||-||||||+.|+.- --|..=.|+++-+.+....... .
T Consensus 264 DIKiEnF~ISA~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~ 343 (807)
T KOG0066|consen 264 DIKIENFDISAQGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLK 343 (807)
T ss_pred cceeeeeeeecccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHH
Confidence 48999999999889999999999999999999999999999999999853 3344455666666543211100 0
Q ss_pred hccceEEEEecCCCC-----CCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHH
Q 016804 164 ISGLRIGLVFQSAAL-----FDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVAL 237 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~~l-----~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaI 237 (382)
....+..++-....| -...|+.|-+.-.+...+.......+.+++.+|.-+|++ +.-+++...+|||.|.||+|
T Consensus 344 aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSL 423 (807)
T KOG0066|consen 344 ADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSL 423 (807)
T ss_pred hhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehhH
Confidence 000112222211111 123466665544332222222233345677888889997 56677888999999999999
Q ss_pred HHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 238 ArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
||||.. +|-+|+|||||++||..+...+-..|+-|. +|+++||||..++...|..|
T Consensus 424 ARALfl-------EPTLLMLDEPTNHLDLNAVIWLdNYLQgWk-------------KTLLIVSHDQgFLD~VCtdI 479 (807)
T KOG0066|consen 424 ARALFL-------EPTLLMLDEPTNHLDLNAVIWLDNYLQGWK-------------KTLLIVSHDQGFLDSVCTDI 479 (807)
T ss_pred HHHHhc-------CceeeeecCCccccccceeeehhhHHhhhh-------------heeEEEecccchHHHHHHHH
Confidence 999984 799999999999999999999999998875 38999999999999999988
|
|
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.1e-21 Score=178.46 Aligned_cols=141 Identities=21% Similarity=0.226 Sum_probs=104.4
Q ss_pred CCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE-EEecCCCCCC
Q 016804 102 GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG-LVFQSAALFD 180 (382)
Q Consensus 102 g~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig-~V~Q~~~l~~ 180 (382)
+...+.+|+++++++|++++|.||||+|||||+++|+-. .-.. ++| |||.+...++
T Consensus 15 ~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~---------------------~~la--~~g~~vpa~~~~~~ 71 (222)
T cd03285 15 DVAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI---------------------VLMA--QIGCFVPCDSADIP 71 (222)
T ss_pred CCCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH---------------------HHHH--HhCCCcCcccEEEe
Confidence 345689999999999999999999999999999999811 0011 345 5665543222
Q ss_pred CCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHH--hcCCCCCCCCCcEEEEe
Q 016804 181 SLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSI--IFDNTKESVEPEVLLYD 258 (382)
Q Consensus 181 ~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL--~~~~~~~a~~P~iLLLD 258 (382)
+ +++++..+++.+.. ...+|.||+|++.+++++ +. +|+++|||
T Consensus 72 ---~----------------------~~~il~~~~l~d~~---~~~lS~~~~e~~~~a~il~~~~-------~~sLvLLD 116 (222)
T cd03285 72 ---I----------------------VDCILARVGASDSQ---LKGVSTFMAEMLETAAILKSAT-------ENSLIIID 116 (222)
T ss_pred ---c----------------------cceeEeeeccccch---hcCcChHHHHHHHHHHHHHhCC-------CCeEEEEe
Confidence 1 12234455665432 568999999999999999 54 69999999
Q ss_pred CC---CCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 259 EP---TAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 259 EP---tagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
|| |++||+.+... ..++.+.++ + .++|++||+ .++.++||++
T Consensus 117 Ep~~gT~~lD~~~~~~--~il~~l~~~~~----------~~vlisTH~-~el~~~~~~~ 162 (222)
T cd03285 117 ELGRGTSTYDGFGLAW--AIAEYIATQIK----------CFCLFATHF-HELTALADEV 162 (222)
T ss_pred cCcCCCChHHHHHHHH--HHHHHHHhcCC----------CeEEEEech-HHHHHHhhcC
Confidence 99 99999988853 344555543 3 489999995 7778899988
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.1e-20 Score=165.24 Aligned_cols=138 Identities=30% Similarity=0.391 Sum_probs=98.8
Q ss_pred EeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE-EEecCCCCCCCCCHHH
Q 016804 108 RGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG-LVFQSAALFDSLTVRE 186 (382)
Q Consensus 108 ~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig-~V~Q~~~l~~~lTV~e 186 (382)
...++.+.++.++.|+|||||||||+++.+....-..+|.+.... +. +.| ++++...-|
T Consensus 12 ~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~-~~------------~~g~~~~~~~~~~------- 71 (162)
T cd03227 12 VPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRS-GV------------KAGCIVAAVSAEL------- 71 (162)
T ss_pred eccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccC-cc------------cCCCcceeeEEEE-------
Confidence 444555566679999999999999999998877666655554411 10 011 111111101
Q ss_pred HHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCH
Q 016804 187 NVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDP 266 (382)
Q Consensus 187 ni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~ 266 (382)
+ +. . .+||+||+||++||++|.... ..+|+++|+|||++|+|+
T Consensus 72 -i-~~-------~-------------------------~~lS~G~~~~~~la~~L~~~~---~~~~~llllDEp~~gld~ 114 (162)
T cd03227 72 -I-FT-------R-------------------------LQLSGGEKELSALALILALAS---LKPRPLYILDEIDRGLDP 114 (162)
T ss_pred -e-hh-------e-------------------------eeccccHHHHHHHHHHHHhcC---CCCCCEEEEeCCCCCCCH
Confidence 0 00 0 019999999999999998520 015899999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 267 IASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 267 ~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
..+..+.+.+.++.+++ .++|++||+.+.+. .+|++
T Consensus 115 ~~~~~l~~~l~~~~~~~----------~~vii~TH~~~~~~-~~d~~ 150 (162)
T cd03227 115 RDGQALAEAILEHLVKG----------AQVIVITHLPELAE-LADKL 150 (162)
T ss_pred HHHHHHHHHHHHHHhcC----------CEEEEEcCCHHHHH-hhhhE
Confidence 99999999999986654 59999999999876 57887
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-19 Score=208.92 Aligned_cols=146 Identities=18% Similarity=0.224 Sum_probs=111.1
Q ss_pred CCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc-cccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCC
Q 016804 182 LTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEP 260 (382)
Q Consensus 182 lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~-~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEP 260 (382)
|||.|-+.|.. ....+.+ ..+.|..+||.- .+.+...+|||||.||+-||.-|.+. ...+.+++||||
T Consensus 1661 mtv~ea~~~F~------~~~~i~~-~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~----~~~~~lyilDEP 1729 (1809)
T PRK00635 1661 TPIEEVAETFP------FLKKIQK-PLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLP----PKHPTLFLLDEI 1729 (1809)
T ss_pred CCHHHHHHHhh------ccHHHHH-HHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcC----CCCCcEEEEcCC
Confidence 56666665531 1122333 356799999974 57889999999999999999999752 124689999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccCCCCcccccc
Q 016804 261 TAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFI 340 (382)
Q Consensus 261 tagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (382)
|.||++.....++++|++|.+.|+ |||+|.||++.+.. ||+|+=|-++
T Consensus 1730 t~GLh~~d~~~Ll~~l~~L~~~g~----------tvivieH~~~~i~~-aD~iidlgp~--------------------- 1777 (1809)
T PRK00635 1730 ATSLDNQQKSALLVQLRTLVSLGH----------SVIYIDHDPALLKQ-ADYLIEMGPG--------------------- 1777 (1809)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCC----------eEEEEeCCHHHHHh-CCEEEEcCCC---------------------
Confidence 999999999999999999998873 99999999999986 8876211111
Q ss_pred cEEEEEeCCeEEEEecccccccCCCHHHHHHHc
Q 016804 341 YRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFAS 373 (382)
Q Consensus 341 ~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 373 (382)
-=-+.|+|+++|+|+++....+.++..+++
T Consensus 1778 ---gG~~GG~iva~Gtp~~i~~~~~S~t~~~l~ 1807 (1809)
T PRK00635 1778 ---SGKTGGKILFSGPPKDISASKDSLLKTYMC 1807 (1809)
T ss_pred ---cccCCCEEEEEeCHHHHhhCCCCcHHHHhc
Confidence 012458999999999987666667766654
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.8e-20 Score=202.97 Aligned_cols=135 Identities=28% Similarity=0.440 Sum_probs=110.8
Q ss_pred CCCCCHHHHHHhhHhhcCCCCH----------HHHHHHHHHHHHHcCCccc-ccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 016804 179 FDSLTVRENVGFLLYENSKMRD----------EQISELVKENLAAVGLKGV-EDRLPSELSGGMKKRVALARSIIFDNTK 247 (382)
Q Consensus 179 ~~~lTV~eni~~~~~~~~~~~~----------~~~~~~v~~~L~~~gL~~~-~~~~~~~LSGGqrQRVaIArAL~~~~~~ 247 (382)
+..+||.|.+.|.- .. ..++ .++.++++ +|+.+||..+ +++.+.+|||||+|||+||+||+.+
T Consensus 434 ~~~~~v~~~~~~~~-~~-~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~--- 507 (943)
T PRK00349 434 VSELSIGEALEFFE-NL-KLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSG--- 507 (943)
T ss_pred HhcCcHHHHHHHHH-hc-CCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhC---
Confidence 34689999998832 21 1222 13445553 7889999876 7999999999999999999999863
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheeh
Q 016804 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVII 327 (382)
Q Consensus 248 ~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~ 327 (382)
.+|+++||||||+|||+.....+.++|++|+++| .|||+|+||++++. .||||
T Consensus 508 --~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G----------~TVIvVeH~~~~i~-~aD~v-------------- 560 (943)
T PRK00349 508 --LTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLG----------NTLIVVEHDEDTIR-AADYI-------------- 560 (943)
T ss_pred --CCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHH-hCCEE--------------
Confidence 1249999999999999999999999999998776 49999999999986 58877
Q ss_pred hccCCCCcccccccEEEEE------eCCeEEEEeccccccc
Q 016804 328 LGAVAPDKEVFFIYRLIFL------YEGKIVWQGMTHEFTS 362 (382)
Q Consensus 328 ~~~~~~~~~~~~~~~ii~l------~~G~i~~~g~~~~~~~ 362 (382)
++| ++|+|+++|++.++..
T Consensus 561 ----------------i~LgpgaG~~~G~iv~~g~~~e~~~ 585 (943)
T PRK00349 561 ----------------VDIGPGAGVHGGEVVASGTPEEIMK 585 (943)
T ss_pred ----------------EEeccccCCCCCEEeeccCHHHHhc
Confidence 899 8999999998888754
|
|
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.3e-20 Score=169.39 Aligned_cols=140 Identities=18% Similarity=0.178 Sum_probs=90.0
Q ss_pred eEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC-CCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHH
Q 016804 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL-APDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVR 185 (382)
Q Consensus 107 L~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~-~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~ 185 (382)
.-..|+++.+|++++|+|||||||||||++|++.. .+..|..... ...++++..|....+ +..
T Consensus 19 ~~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~-------------~~~~i~~~dqi~~~~---~~~ 82 (202)
T cd03243 19 FVPNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPA-------------ESASIPLVDRIFTRI---GAE 82 (202)
T ss_pred eEeeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccc-------------cccccCCcCEEEEEe---cCc
Confidence 34456666789999999999999999999999543 2222321110 011244433221111 111
Q ss_pred HHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCC
Q 016804 186 ENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265 (382)
Q Consensus 186 eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD 265 (382)
+ ......+.+|.+++| +..+.+++. +|+++|+||||+|+|
T Consensus 83 d--------------------------------~i~~~~s~~~~e~~~-l~~i~~~~~-------~~~llllDEp~~gld 122 (202)
T cd03243 83 D--------------------------------SISDGRSTFMAELLE-LKEILSLAT-------PRSLVLIDELGRGTS 122 (202)
T ss_pred c--------------------------------cccCCceeHHHHHHH-HHHHHHhcc-------CCeEEEEecCCCCCC
Confidence 1 122233456777776 444455554 699999999999999
Q ss_pred HHHHHHHHH-HHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 266 PIASTVVED-LIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 266 ~~~~~~l~~-lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+..+..+.. +++.+.+.+ .++|++||+.+.+. .++++
T Consensus 123 ~~~~~~l~~~ll~~l~~~~----------~~vi~~tH~~~~~~-~~~~~ 160 (202)
T cd03243 123 TAEGLAIAYAVLEHLLEKG----------CRTLFATHFHELAD-LPEQV 160 (202)
T ss_pred HHHHHHHHHHHHHHHHhcC----------CeEEEECChHHHHH-HhhcC
Confidence 998887754 567676655 58999999987765 56666
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.8e-19 Score=188.54 Aligned_cols=123 Identities=26% Similarity=0.364 Sum_probs=102.8
Q ss_pred HHHHHHHcCCcc-cccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCC
Q 016804 207 VKENLAAVGLKG-VEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGEN 285 (382)
Q Consensus 207 v~~~L~~~gL~~-~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~ 285 (382)
..+.|..+||.- .+-++..+|||||.|||-||.-|.+. +...-++||||||.||-....+.+++.|.+|..+|.
T Consensus 802 kLqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~----~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~Gn- 876 (935)
T COG0178 802 KLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKR----STGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGN- 876 (935)
T ss_pred HHHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhc----cCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCC-
Confidence 345688899973 56888999999999999999999864 345689999999999999999999999999999874
Q ss_pred CCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccCCCCcccccccEEEEE------eCCeEEEEecccc
Q 016804 286 GLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFL------YEGKIVWQGMTHE 359 (382)
Q Consensus 286 ~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l------~~G~i~~~g~~~~ 359 (382)
|||+|.|+|+.+. .||.| |-| +.|+|+++|+|++
T Consensus 877 ---------TViVIEHNLdVIk-~AD~I------------------------------IDLGPeGG~~GG~iva~GTPee 916 (935)
T COG0178 877 ---------TVIVIEHNLDVIK-TADWI------------------------------IDLGPEGGDGGGEIVASGTPEE 916 (935)
T ss_pred ---------EEEEEecccceEe-ecCEE------------------------------EEcCCCCCCCCceEEEecCHHH
Confidence 9999999999987 47755 543 4589999999999
Q ss_pred cccCCCHHHHHHHcC
Q 016804 360 FTSSSNPIVQQFASG 374 (382)
Q Consensus 360 ~~~~~~~~~~~~~~~ 374 (382)
+......++.+|+..
T Consensus 917 va~~~~S~Tg~yLk~ 931 (935)
T COG0178 917 VAKVKASYTGKYLKK 931 (935)
T ss_pred HHhCccchhHHHHHH
Confidence 875556666666654
|
|
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.8e-19 Score=166.44 Aligned_cols=145 Identities=19% Similarity=0.182 Sum_probs=108.0
Q ss_pred CCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCC
Q 016804 102 GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDS 181 (382)
Q Consensus 102 g~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~ 181 (382)
.+..+.+|++|++++|++++|+||||+||||++++|+++. + .. ++|+-. |..+..
T Consensus 14 ~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~-------------~--------la--~~G~~v--pa~~~~ 68 (204)
T cd03282 14 KKNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA-------------I--------MA--QIGCFV--PAEYAT 68 (204)
T ss_pred CCcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH-------------H--------HH--HcCCCc--chhhcC
Confidence 3467999999999999999999999999999999999884 0 11 233211 445556
Q ss_pred CCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCC
Q 016804 182 LTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPT 261 (382)
Q Consensus 182 lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPt 261 (382)
+++.|+|... ++..+..++..+++|+|++|+. .+.+++. +|+++|+|||+
T Consensus 69 l~~~d~I~~~----------------------~~~~d~~~~~~S~fs~e~~~~~-~il~~~~-------~~~lvllDE~~ 118 (204)
T cd03282 69 LPIFNRLLSR----------------------LSNDDSMERNLSTFASEMSETA-YILDYAD-------GDSLVLIDELG 118 (204)
T ss_pred ccChhheeEe----------------------cCCccccchhhhHHHHHHHHHH-HHHHhcC-------CCcEEEecccc
Confidence 6777777331 2233344566788999999764 4444554 69999999999
Q ss_pred CCCCHHHHHHH-HHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhc
Q 016804 262 AGLDPIASTVV-EDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVD 311 (382)
Q Consensus 262 agLD~~~~~~l-~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aD 311 (382)
+|+|+.....+ ..+++.+.+.+ .++|++||+.+.+...++
T Consensus 119 ~gt~~~~~~~l~~~il~~l~~~~----------~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 119 RGTSSADGFAISLAILECLIKKE----------STVFFATHFRDIAAILGN 159 (204)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcC----------CEEEEECChHHHHHHhhc
Confidence 99999775554 55677777665 599999999999887654
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.8e-19 Score=197.29 Aligned_cols=133 Identities=29% Similarity=0.419 Sum_probs=106.6
Q ss_pred CCCHHHHHHhhHhhcCCCCH----------HHHHHHHHHHHHHcCCccc-ccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 181 SLTVRENVGFLLYENSKMRD----------EQISELVKENLAAVGLKGV-EDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 181 ~lTV~eni~~~~~~~~~~~~----------~~~~~~v~~~L~~~gL~~~-~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
.|||.|.+.|..... ... .++.+++ +.+..+||..+ +++.+.+|||||+|||+||+||+.+
T Consensus 434 ~~~v~~~~~~~~~l~--~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~----- 505 (924)
T TIGR00630 434 ELSIREAHEFFNQLD--LTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSG----- 505 (924)
T ss_pred cCCHHHHHHHHHhcC--CChHHHHHHHHHHHHHHHHH-HhHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhC-----
Confidence 578888877753211 111 1222332 34778899765 7999999999999999999999963
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
..|+++||||||+|||+.....+.++|++++++| .|||+|+||++++. .|||+
T Consensus 506 ~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G----------~TVIvVeHd~~~i~-~aD~v---------------- 558 (924)
T TIGR00630 506 LTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLG----------NTVIVVEHDEETIR-AADYV---------------- 558 (924)
T ss_pred CCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCC----------CEEEEEECCHHHHh-hCCEE----------------
Confidence 2258999999999999999999999999998876 49999999999986 78877
Q ss_pred cCCCCcccccccEEEEE------eCCeEEEEeccccccc
Q 016804 330 AVAPDKEVFFIYRLIFL------YEGKIVWQGMTHEFTS 362 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l------~~G~i~~~g~~~~~~~ 362 (382)
++| ++|+|+++|++.++..
T Consensus 559 --------------i~LgpgaG~~~G~Iv~~g~~~el~~ 583 (924)
T TIGR00630 559 --------------IDIGPGAGIHGGEVVASGTPEEILA 583 (924)
T ss_pred --------------EEecccccCCCCEEeeccCHHHHhc
Confidence 899 8999999998888743
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.4e-18 Score=166.04 Aligned_cols=73 Identities=25% Similarity=0.131 Sum_probs=55.4
Q ss_pred CCCCChHHHHHHHHHHHHhcCC--CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcc
Q 016804 224 PSELSGGMKKRVALARSIIFDN--TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTH 301 (382)
Q Consensus 224 ~~~LSGGqrQRVaIArAL~~~~--~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTH 301 (382)
...||+||||+++|||+|+.-. ..-..+|+++|+||||++||+..+..+.+.|+++. .+++++|
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~--------------q~ii~~~ 246 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV--------------QTFVTTT 246 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC--------------CEEEEeC
Confidence 3568999999999999985100 00002699999999999999999999998887652 3567777
Q ss_pred CHHHHHHhh
Q 016804 302 QHSTIRRAV 310 (382)
Q Consensus 302 dl~~~~~~a 310 (382)
+...+..+|
T Consensus 247 ~~~~~~~~~ 255 (270)
T cd03242 247 DLADFDALW 255 (270)
T ss_pred Cchhccchh
Confidence 777777776
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.8e-18 Score=158.76 Aligned_cols=142 Identities=24% Similarity=0.286 Sum_probs=96.2
Q ss_pred CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCC
Q 016804 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSL 182 (382)
Q Consensus 103 ~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~l 182 (382)
.+.+.++++|+.++ ++++|+||||||||||||+|+++.-. |+ .|..+. . ...+++++.| +|+.+
T Consensus 17 ~~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l--~~---~g~~vp----~---~~~~i~~~~~---i~~~~ 80 (216)
T cd03284 17 EPFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL--AQ---IGSFVP----A---SKAEIGVVDR---IFTRI 80 (216)
T ss_pred CceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH--hc---cCCeec----c---ccceecceee---EeccC
Confidence 45689999999887 99999999999999999999875422 11 121111 1 1225788865 56778
Q ss_pred CHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCC--
Q 016804 183 TVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEP-- 260 (382)
Q Consensus 183 TV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEP-- 260 (382)
++.||+..+. |.=+..++.|++++.+ +.+|+++|||||
T Consensus 81 ~~~~~ls~g~-----------------------------------s~f~~e~~~l~~~l~~-----~~~~~llllDEp~~ 120 (216)
T cd03284 81 GASDDLAGGR-----------------------------------STFMVEMVETANILNN-----ATERSLVLLDEIGR 120 (216)
T ss_pred CchhhhccCc-----------------------------------chHHHHHHHHHHHHHh-----CCCCeEEEEecCCC
Confidence 8888886531 2223333444444432 137999999999
Q ss_pred -CCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 261 -TAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 261 -tagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
|+++|.... ...+++.+.+. + .++|++||+. ++.+++|++
T Consensus 121 gt~~lD~~~~--~~~il~~l~~~~~----------~~vi~~TH~~-~l~~l~~~~ 162 (216)
T cd03284 121 GTSTYDGLSI--AWAIVEYLHEKIG----------AKTLFATHYH-ELTELEGKL 162 (216)
T ss_pred CCChHHHHHH--HHHHHHHHHhccC----------CcEEEEeCcH-HHHHHhhcC
Confidence 888888652 34455556554 4 4899999996 456688876
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1e-17 Score=168.29 Aligned_cols=180 Identities=27% Similarity=0.380 Sum_probs=140.5
Q ss_pred EEeCC-eeeeEeeeEEEeCCc-----EEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEE
Q 016804 99 KSFGE-KHILRGVSFKIRHGE-----AVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLV 172 (382)
Q Consensus 99 ~~yg~-~~iL~~vsl~i~~Ge-----~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V 172 (382)
++|++ +.-+.+..|.|..|+ ++..+|.||.||||++++++|.++|++|. ++. ...|+|=
T Consensus 343 y~Yp~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~------e~p---------~lnVSyk 407 (592)
T KOG0063|consen 343 YSYPKMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGG------EIP---------VLNVSYK 407 (592)
T ss_pred eccCcceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccC------ccc---------ccceecc
Confidence 34543 567889999999885 68999999999999999999999999761 121 2258888
Q ss_pred ecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCC
Q 016804 173 FQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEP 252 (382)
Q Consensus 173 ~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P 252 (382)
||...--..-||++-+.--.+. .-+. .+.+.+.++-+.+++..++-+.+|||||+|||+||.+|-+ .+
T Consensus 408 pqkispK~~~tvR~ll~~kIr~-ay~~----pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGK-------pA 475 (592)
T KOG0063|consen 408 PQKISPKREGTVRQLLHTKIRD-AYMH----PQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGK-------PA 475 (592)
T ss_pred ccccCccccchHHHHHHHHhHh-hhcC----HHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCC-------CC
Confidence 8876543345888876432210 0022 2345677888888889999999999999999999999987 49
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhc
Q 016804 253 EVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLC 314 (382)
Q Consensus 253 ~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~ 314 (382)
++.+.|||.+-||.+.+..--..++++--..+ +|-.+|.||.-.+-..+|||+
T Consensus 476 dvYliDEpsAylDSeQRi~AskvikRfilhak---------ktafvVEhdfImaTYladrvi 528 (592)
T KOG0063|consen 476 DVYLIDEPSAYLDSEQRIIASKVIKRFILHAK---------KTAFVVEHDFIMATYLADRVI 528 (592)
T ss_pred ceEEecCchhhcChHHHHHHHHHHHHHHHhcc---------chhhhhhhHHHHHHhhcceeE
Confidence 99999999999999999988888888743221 489999999998888999883
|
|
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.6e-17 Score=159.42 Aligned_cols=157 Identities=25% Similarity=0.277 Sum_probs=106.4
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCC
Q 016804 118 EAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSK 197 (382)
Q Consensus 118 e~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~ 197 (382)
.-++|+||||||||||+++|+|+++|++|+|.++|+++.......+.. ..+++++|+. +++.++|.+|..-
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~-~~~~~~~q~~-~~~r~~v~~~~~k------- 182 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIA-GCVNGVPQHD-VGIRTDVLDGCPK------- 182 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHH-HHhccccccc-ccccccccccchH-------
Confidence 578999999999999999999999999999999999986432222332 2478888854 5556777666311
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 016804 198 MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIR 277 (382)
Q Consensus 198 ~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~ 277 (382)
. . |+ .+++|++ +|+++|+|||++ .+.+..+++
T Consensus 183 ---~------~---------------------~~---~~~i~~~---------~P~villDE~~~------~e~~~~l~~ 214 (270)
T TIGR02858 183 ---A------E---------------------GM---MMLIRSM---------SPDVIVVDEIGR------EEDVEALLE 214 (270)
T ss_pred ---H------H---------------------HH---HHHHHhC---------CCCEEEEeCCCc------HHHHHHHHH
Confidence 0 0 00 3444443 699999999974 344555666
Q ss_pred HHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecc
Q 016804 278 SVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMT 357 (382)
Q Consensus 278 ~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~ 357 (382)
.+. .| .++|++||+.+. ..+++|=.+ +.=++..+.+|+++|++|+ ..|.+
T Consensus 215 ~~~-~G----------~~vI~ttH~~~~-~~~~~r~~~----------------~~l~~~~~~~r~i~L~~~~--~~g~~ 264 (270)
T TIGR02858 215 ALH-AG----------VSIIATAHGRDV-EDLYKRPVF----------------KELIENEAFERYVVLSRRK--GPGTV 264 (270)
T ss_pred HHh-CC----------CEEEEEechhHH-HHHHhChHH----------------HHHHhcCceEEEEEEecCC--CCCce
Confidence 654 45 599999998644 344443200 1123446678999999887 66766
Q ss_pred cccc
Q 016804 358 HEFT 361 (382)
Q Consensus 358 ~~~~ 361 (382)
.++.
T Consensus 265 ~~i~ 268 (270)
T TIGR02858 265 EAVY 268 (270)
T ss_pred eecc
Confidence 6654
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.4e-16 Score=145.50 Aligned_cols=80 Identities=20% Similarity=0.274 Sum_probs=59.4
Q ss_pred CCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHH-HHHHHHHHHc-CCCCCCCCCC
Q 016804 215 GLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVV-EDLIRSVHKK-GENGLANPGN 292 (382)
Q Consensus 215 gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l-~~lL~~l~~~-g~~~~~~~~~ 292 (382)
++.+..++..+++|+|++|...+++.. .+|+++|+|||++|+|+.....+ ..+++.+.++ +
T Consensus 50 ~~~d~~~~~~s~fs~~~~~l~~~l~~~--------~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~--------- 112 (185)
T smart00534 50 GASDSLAQGLSTFMVEMKETANILKNA--------TENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIG--------- 112 (185)
T ss_pred CCCCchhccccHHHHHHHHHHHHHHhC--------CCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCC---------
Confidence 344455667889999988854444432 26999999999999999977776 4667777664 4
Q ss_pred ceEEEEEccCHHHHHHhhchh
Q 016804 293 IASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 293 ~~tiIivTHdl~~~~~~aDrv 313 (382)
.++|++||+++ +.+++|+-
T Consensus 113 -~~iii~TH~~~-l~~~~~~~ 131 (185)
T smart00534 113 -ALTLFATHYHE-LTKLADEH 131 (185)
T ss_pred -CeEEEEecHHH-HHHHhhcC
Confidence 48999999995 56677753
|
|
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.3e-15 Score=140.85 Aligned_cols=141 Identities=22% Similarity=0.224 Sum_probs=95.2
Q ss_pred eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHH--cCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCC-CC
Q 016804 105 HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIA--GLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALF-DS 181 (382)
Q Consensus 105 ~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~--Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~-~~ 181 (382)
.+-.|++++=..+.+++|.||||+|||||||.|+ +++ +..|...... ..+++|..|...-+ ..
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-------------~~~~~~~d~i~~~l~~~ 82 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-------------SATIGLVDKIFTRMSSR 82 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-------------CcEEeeeeeeeeeeCCc
Confidence 3445555532223789999999999999999998 434 5667665432 11578887764322 12
Q ss_pred CCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCC
Q 016804 182 LTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPT 261 (382)
Q Consensus 182 lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPt 261 (382)
.++.+++ + .+ .-+.||+++|++++. +|+++|+|||+
T Consensus 83 ~si~~~~----------------------------S--------~f-~~el~~l~~~l~~~~-------~~slvllDE~~ 118 (213)
T cd03281 83 ESVSSGQ----------------------------S--------AF-MIDLYQVSKALRLAT-------RRSLVLIDEFG 118 (213)
T ss_pred cChhhcc----------------------------c--------hH-HHHHHHHHHHHHhCC-------CCcEEEecccc
Confidence 2222221 1 11 345689999999986 69999999999
Q ss_pred CCCCHHHH-HHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhh
Q 016804 262 AGLDPIAS-TVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAV 310 (382)
Q Consensus 262 agLD~~~~-~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~a 310 (382)
+|+|+... ..+..+++++.+.+. +..++|++||+++.+....
T Consensus 119 ~gtd~~~~~~~~~ail~~l~~~~~-------~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 119 KGTDTEDGAGLLIATIEHLLKRGP-------ECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCC-------CCcEEEEEcChHHHHHhhh
Confidence 99999764 444678888876421 0037999999999988763
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.8e-16 Score=145.99 Aligned_cols=180 Identities=24% Similarity=0.338 Sum_probs=98.2
Q ss_pred EeeeEEEeCCcEEEEEcCCCccHHHHHHHHH-cCC--CCCccEEEECCEECCCCCCh----hhhccceEEEEecCCCCC-
Q 016804 108 RGVSFKIRHGEAVGIIGPSGTGKSTILKIIA-GLL--APDKGEVYIRGRKRAGLISD----EEISGLRIGLVFQSAALF- 179 (382)
Q Consensus 108 ~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~-Gl~--~p~sG~I~i~G~~i~~~~~~----~~~~~~~Ig~V~Q~~~l~- 179 (382)
+...+.+.+ .++.|+|||||||||++.+|. .|- +..+.+ +.....+... .......|...+++..-.
T Consensus 16 ~~~~~~~~~-~~~~i~G~NGsGKS~ileAi~~~l~~~~~~~~r----~~~~~~lI~~~~~~~~~~~a~V~~~~~~~~~~~ 90 (220)
T PF02463_consen 16 KNAELSFSP-GLNVIVGPNGSGKSNILEAIEFVLGGRPSKSFR----GSKLKDLINKSGSDQDSKSAEVELIFDNSDEEF 90 (220)
T ss_dssp CEEEEETTS-SEEEEEESTTSSHHHHHHHHHHHTTSS-TTTTT-----SSGGTCB--BTTB---SEEEEEEEEECTTEES
T ss_pred CeEEEecCC-CCEEEEcCCCCCHHHHHHHHHHHHHHccccccc----ccccccccccccccccccccccccccccccccc
Confidence 455556644 599999999999999999993 343 111111 1111111110 011111366666654321
Q ss_pred ---CC-CCHHHHHHh-hHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcE
Q 016804 180 ---DS-LTVRENVGF-LLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEV 254 (382)
Q Consensus 180 ---~~-lTV~eni~~-~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~i 254 (382)
.. ..+...+.- ....+.--......+.+.+.+..+.+... .||||||.+++||--|+.. ...+.++
T Consensus 91 ~~~~~~~~i~r~~~~~~~~~~~in~~~~~~~~~~~~l~~~~i~~~------~lSgGEk~~~~Lal~lA~~---~~~~~p~ 161 (220)
T PF02463_consen 91 ELDKKEIEISRRIDRKGRSEYKINGKKVRLKDLEELLPEVGISPE------FLSGGEKSLVALALLLALQ---RYKPSPF 161 (220)
T ss_dssp SSSSSEEEEEEEEETTS-EEEEETTEEE-HHHHHHHHHCTTTTTT------GS-HHHHHHHHHHHHHHHH---TCS--SE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccc------ccccccccccccccccccc---ccccccc
Confidence 00 000000000 00000000011112345556666665432 9999999999999776431 1347899
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 255 LLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 255 LLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|||||.++||...+..+.++|+++.++ .-+|++||+-.... .||+.
T Consensus 162 ~ilDEvd~~LD~~~~~~l~~~l~~~~~~-----------~Q~ii~Th~~~~~~-~a~~~ 208 (220)
T PF02463_consen 162 LILDEVDAALDEQNRKRLADLLKELSKQ-----------SQFIITTHNPEMFE-DADKL 208 (220)
T ss_dssp EEEESTTTTS-HHHHHHHHHHHHHHTTT-----------SEEEEE-S-HHHHT-T-SEE
T ss_pred cccccccccccccccccccccccccccc-----------cccccccccccccc-ccccc
Confidence 9999999999999999999999998654 37999999976654 56766
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=99.61 E-value=1e-15 Score=166.94 Aligned_cols=152 Identities=21% Similarity=0.265 Sum_probs=103.9
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCC-cEEEEEcCCCccHHHHHHHHHcC-CCCCccEEEECCEECCCCCChhhhccce
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHG-EAVGIIGPSGTGKSTILKIIAGL-LAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~G-e~vaLiGpNGaGKSTLLklI~Gl-~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
.+.++++..-+-...-.-.+|+++..+ ++++|.||||+|||||||+|+|+ +.+..|-
T Consensus 295 ~i~l~~~rhPll~~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~--------------------- 353 (771)
T TIGR01069 295 KIILENARHPLLKEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGI--------------------- 353 (771)
T ss_pred CEEEccccCceecCCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCC---------------------
Confidence 477777665332111123478889887 99999999999999999999987 3333331
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~ 248 (382)
+||..... .+.+++++.. .... .+......+++|+||+|++.|++++-
T Consensus 354 --~Vpa~~~~--~~~~~d~i~~------~i~~----------------~~si~~~LStfS~~m~~~~~il~~~~------ 401 (771)
T TIGR01069 354 --PIPANEHS--EIPYFEEIFA------DIGD----------------EQSIEQNLSTFSGHMKNISAILSKTT------ 401 (771)
T ss_pred --CccCCccc--cccchhheee------ecCh----------------HhHHhhhhhHHHHHHHHHHHHHHhcC------
Confidence 33333210 0111222210 0111 11123346789999999999998873
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHH-HHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHH
Q 016804 249 SVEPEVLLYDEPTAGLDPIASTVV-EDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIR 307 (382)
Q Consensus 249 a~~P~iLLLDEPtagLD~~~~~~l-~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~ 307 (382)
+|.++|+|||++|+|+.....+ ..++..+.+.+ .++|++||+.+...
T Consensus 402 --~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g----------~~viitTH~~eL~~ 449 (771)
T TIGR01069 402 --ENSLVLFDELGAGTDPDEGSALAISILEYLLKQN----------AQVLITTHYKELKA 449 (771)
T ss_pred --CCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcC----------CEEEEECChHHHHH
Confidence 5999999999999999999988 57788887765 58999999987644
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >PRK00064 recF recombination protein F; Reviewed | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.2e-14 Score=141.00 Aligned_cols=74 Identities=20% Similarity=0.244 Sum_probs=57.5
Q ss_pred CCCChHHHHHHHHHHHHhcC--CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccC
Q 016804 225 SELSGGMKKRVALARSIIFD--NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQ 302 (382)
Q Consensus 225 ~~LSGGqrQRVaIArAL~~~--~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHd 302 (382)
..+|.||||+++||++|+.- ......+|+|||||||+++||+..+..+.+.+.++ + ..++++||+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~----------~qv~it~~~ 338 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---G----------AQVFITTTD 338 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---C----------CEEEEEcCC
Confidence 58999999999999998610 00000269999999999999999999999888764 2 268999999
Q ss_pred HHHHHHhhc
Q 016804 303 HSTIRRAVD 311 (382)
Q Consensus 303 l~~~~~~aD 311 (382)
.+.+...++
T Consensus 339 ~~~~~~~~~ 347 (361)
T PRK00064 339 LEDLADLLE 347 (361)
T ss_pred hhhhhhhhc
Confidence 887766543
|
|
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.9e-15 Score=126.14 Aligned_cols=77 Identities=21% Similarity=0.242 Sum_probs=63.2
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCC
Q 016804 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLT 183 (382)
Q Consensus 104 ~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lT 183 (382)
..+|++++|++++||+++|+||||||||||++++. +|++.++|.++..+.. .. ....+++++|+ +|+ .|
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~-~~-~~~~~~~~~q~--lf~-~t 70 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIRE-DS-KDELIGRNPEL--GLE-IR 70 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhh-hh-cCCEEEEechh--cch-hh
Confidence 57899999999999999999999999999999986 8999999998765422 21 22247788887 665 59
Q ss_pred HHHHHHhh
Q 016804 184 VRENVGFL 191 (382)
Q Consensus 184 V~eni~~~ 191 (382)
++|||.++
T Consensus 71 i~~Ni~~~ 78 (107)
T cd00820 71 LRLNIFLI 78 (107)
T ss_pred HHhhceee
Confidence 99999874
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.2e-15 Score=136.53 Aligned_cols=149 Identities=23% Similarity=0.300 Sum_probs=88.6
Q ss_pred EEEEEcCCCccHHHHH-HHHHcCCCC-----------------CccEEEECCEECCCCCChhhhccceEEEEecCCC---
Q 016804 119 AVGIIGPSGTGKSTIL-KIIAGLLAP-----------------DKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAA--- 177 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLL-klI~Gl~~p-----------------~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~--- 177 (382)
.++|+|+||||||||+ +++.|..++ +.|.+.+.+.|..+.... ...+.+|+.+...
T Consensus 11 kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~---~~~~~~~~~~~~~~i~ 87 (215)
T PTZ00132 11 KLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKF---GGLRDGYYIKGQCAII 87 (215)
T ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhh---hhhhHHHhccCCEEEE
Confidence 4899999999999999 689998764 568888888876532111 1111122222211
Q ss_pred CCCCCC---HHHHHHhh--------------HhhcC-CCCHHHHHHHHHHHHHHcCCcccccCCCCCCChH--HHHHHHH
Q 016804 178 LFDSLT---VRENVGFL--------------LYENS-KMRDEQISELVKENLAAVGLKGVEDRLPSELSGG--MKKRVAL 237 (382)
Q Consensus 178 l~~~lT---V~eni~~~--------------~~~~~-~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGG--qrQRVaI 237 (382)
.|+ .| -.+++... +..++ .....+......+.++..++. +. ..+.+||+ |++++.|
T Consensus 88 v~d-~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~--e~Sa~~~~~v~~~f~~i 163 (215)
T PTZ00132 88 MFD-VTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQITFHRKKNLQ-YY--DISAKSNYNFEKPFLWL 163 (215)
T ss_pred EEE-CcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHHHHHHHcCCE-EE--EEeCCCCCCHHHHHHHH
Confidence 011 11 11111100 00011 011111111112334444432 11 23445555 8999999
Q ss_pred HHHHhcCCCCCCCCCcEEEEeCCC-----CCCCHHHHHHHHHHHHHHHH
Q 016804 238 ARSIIFDNTKESVEPEVLLYDEPT-----AGLDPIASTVVEDLIRSVHK 281 (382)
Q Consensus 238 ArAL~~~~~~~a~~P~iLLLDEPt-----agLD~~~~~~l~~lL~~l~~ 281 (382)
||+++. +|+++++|||| ++||+..++.+.+.++++++
T Consensus 164 a~~l~~-------~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 164 ARRLTN-------DPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHhh-------cccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 999997 69999999999 99999999999999999864
|
|
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-14 Score=146.48 Aligned_cols=175 Identities=27% Similarity=0.345 Sum_probs=122.5
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEE--CCEECCCCCChhhhcc---------ce----EEEEecCCCC
Q 016804 114 IRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI--RGRKRAGLISDEEISG---------LR----IGLVFQSAAL 178 (382)
Q Consensus 114 i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i--~G~~i~~~~~~~~~~~---------~~----Ig~V~Q~~~l 178 (382)
-++|++.++||-||-||||-+++++|-.+|.-|.-.- +++++-......++.. .+ .-||.|-|..
T Consensus 97 prpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~ 176 (592)
T KOG0063|consen 97 PRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRA 176 (592)
T ss_pred CCcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHH
Confidence 3579999999999999999999999999998664321 1111110000000000 00 0111111111
Q ss_pred CCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEe
Q 016804 179 FDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYD 258 (382)
Q Consensus 179 ~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLD 258 (382)
.. .+|.+++.- ...++...++++.+.|....+|-..+|||||-||.+||.+.++ +.++.++|
T Consensus 177 ~k-~~v~~~l~~----------~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq-------~advyMFD 238 (592)
T KOG0063|consen 177 VK-GTVGSLLDR----------KDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQ-------KADVYMFD 238 (592)
T ss_pred HH-HHHHHHHHH----------HhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhh-------hcceeEec
Confidence 10 122222211 1112234567888889989999999999999999999999997 69999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccc
Q 016804 259 EPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLF 316 (382)
Q Consensus 259 EPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~ 316 (382)
||.+.||...+..--..|++|.... .=+|+|.||++....++|-+|.+
T Consensus 239 EpSsYLDVKQRLkaA~~IRsl~~p~----------~YiIVVEHDLsVLDylSDFiCcL 286 (592)
T KOG0063|consen 239 EPSSYLDVKQRLKAAITIRSLINPD----------RYIIVVEHDLSVLDYLSDFICCL 286 (592)
T ss_pred CCcccchHHHhhhHHHHHHHhhCCC----------CeEEEEEeechHHHhhhcceeEE
Confidence 9999999999999999999997654 36999999999999999988665
|
|
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.4e-13 Score=126.57 Aligned_cols=139 Identities=13% Similarity=0.150 Sum_probs=91.3
Q ss_pred CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHc-CCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCC
Q 016804 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAG-LLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDS 181 (382)
Q Consensus 103 ~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~G-l~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~ 181 (382)
...+.+|++|++.+|++++|.||||+||||++++|++ .+.++.|...+... .+++|..|= |..
T Consensus 17 ~~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~-------------~~~~~~~~i---~~~ 80 (222)
T cd03287 17 KSFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASS-------------ATLSIFDSV---LTR 80 (222)
T ss_pred CCEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCc-------------eEEeccceE---EEE
Confidence 3568999999999999999999999999999999999 67788888665421 124443331 111
Q ss_pred CCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCC
Q 016804 182 LTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPT 261 (382)
Q Consensus 182 lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPt 261 (382)
+...|++.- .+|-=+..-..+++.+-. +.++.++|+|||.
T Consensus 81 ~~~~d~~~~-----------------------------------~~StF~~e~~~~~~il~~-----~~~~sLvllDE~~ 120 (222)
T cd03287 81 MGASDSIQH-----------------------------------GMSTFMVELSETSHILSN-----CTSRSLVILDELG 120 (222)
T ss_pred ecCcccccc-----------------------------------ccchHHHHHHHHHHHHHh-----CCCCeEEEEccCC
Confidence 111222211 111111111112222211 1269999999999
Q ss_pred CCCCHHHHHHH-HHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHH
Q 016804 262 AGLDPIASTVV-EDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIR 307 (382)
Q Consensus 262 agLD~~~~~~l-~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~ 307 (382)
+|.|+.....+ ..+++.+.+. + .++|++||+.+...
T Consensus 121 ~gT~~~d~~~i~~~il~~l~~~~~----------~~~i~~TH~~~l~~ 158 (222)
T cd03287 121 RGTSTHDGIAIAYATLHYLLEEKK----------CLVLFVTHYPSLGE 158 (222)
T ss_pred CCCChhhHHHHHHHHHHHHHhccC----------CeEEEEcccHHHHH
Confidence 99987766664 5677777765 4 58999999998764
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.3e-12 Score=134.47 Aligned_cols=186 Identities=18% Similarity=0.255 Sum_probs=117.6
Q ss_pred CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCC---C---hhhhccceEEEEecCC
Q 016804 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLI---S---DEEISGLRIGLVFQSA 176 (382)
Q Consensus 103 ~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~---~---~~~~~~~~Ig~V~Q~~ 176 (382)
+..+++++ |.+.+|++++|+|+||+|||||+++|+|+.+|+.|.|.+.|++-.... . .....++.|.++.+..
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~ 223 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSD 223 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCC
Confidence 35689999 999999999999999999999999999999999999999665432111 0 0011123588887642
Q ss_pred CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCCh-HHHHHHHHHHHHhcCCCCCCCCCcEE
Q 016804 177 ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSG-GMKKRVALARSIIFDNTKESVEPEVL 255 (382)
Q Consensus 177 ~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSG-GqrQRVaIArAL~~~~~~~a~~P~iL 255 (382)
. ++.+-+.-+.. .-.+.|++..-|-+-+. ...+|+- -|-|| .|+-++ .+|+
T Consensus 224 ~-----~~~~r~~~~~~----------a~~iAEyfr~~g~~Vll--~~Dsltr~A~A~r-Eisl~~--------ge~P-- 275 (438)
T PRK07721 224 Q-----PALMRIKGAYT----------ATAIAEYFRDQGLNVML--MMDSVTRVAMAQR-EIGLAV--------GEPP-- 275 (438)
T ss_pred C-----CHHHHHHHHHH----------HHHHHHHHHHCCCcEEE--EEeChHHHHHHHH-HHHHhc--------CCCC--
Confidence 1 22222221110 01123344433432110 1123321 11111 111111 1344
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHH--cCC-CCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccCC
Q 016804 256 LYDEPTAGLDPIASTVVEDLIRSVHK--KGE-NGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVA 332 (382)
Q Consensus 256 LLDEPtagLD~~~~~~l~~lL~~l~~--~g~-~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~ 332 (382)
.|+|+||.....+.++++++.. +|. |.+ .||++.+||+++ .+||++
T Consensus 276 ----~~~G~dp~~~~~l~~ller~~~~~~GsIT~~------~TVlv~~hdm~e--~i~d~v------------------- 324 (438)
T PRK07721 276 ----TTKGYTPSVFAILPKLLERTGTNASGSITAF------YTVLVDGDDMNE--PIADTV------------------- 324 (438)
T ss_pred ----ccccCCHHHHHHHHHHHHHhcCCCCCCeeeE------EEEEEECCCCCc--hhhhhE-------------------
Confidence 5899999999999999999874 220 000 289999999995 788888
Q ss_pred CCcccccccEEEEEeCCeEEEEecccc
Q 016804 333 PDKEVFFIYRLIFLYEGKIVWQGMTHE 359 (382)
Q Consensus 333 ~~~~~~~~~~ii~l~~G~i~~~g~~~~ 359 (382)
..+.+|+|+.++...+
T Consensus 325 -----------~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 325 -----------RGILDGHFVLDRQLAN 340 (438)
T ss_pred -----------EEecCEEEEEeccHHH
Confidence 8999999999887654
|
|
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.6e-13 Score=130.16 Aligned_cols=178 Identities=17% Similarity=0.125 Sum_probs=103.6
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc--EEEECCEECCCCCChhhhc-cceEEEEecCCCCCCCCCHHHHH
Q 016804 112 FKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG--EVYIRGRKRAGLISDEEIS-GLRIGLVFQSAALFDSLTVRENV 188 (382)
Q Consensus 112 l~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG--~I~i~G~~i~~~~~~~~~~-~~~Ig~V~Q~~~l~~~lTV~eni 188 (382)
+.+.+||.++|+||+|+|||||++.|++......+ .+++....-... ...+.. ...-.+|...... +....+
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~-ev~el~~~I~~~~v~~~~~~----~~~~~~ 85 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPE-EVTDMQRSVKGEVIASTFDE----PPERHV 85 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCc-cHHHHHHHhccEEEEecCCC----CHHHHH
Confidence 47889999999999999999999999999877643 323221110000 111111 1111122222111 112221
Q ss_pred Hhh-------Hhh-cCCCC----HHHHHHHHHHHHHHcCCcccccCCCCCCChHH--------HHHHHHHHHHhcCCCCC
Q 016804 189 GFL-------LYE-NSKMR----DEQISELVKENLAAVGLKGVEDRLPSELSGGM--------KKRVALARSIIFDNTKE 248 (382)
Q Consensus 189 ~~~-------~~~-~~~~~----~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGq--------rQRVaIArAL~~~~~~~ 248 (382)
... .+. ..+.+ -+++.+ ..+..+.+.. .....+|||+ +||+++||++.+
T Consensus 86 ~~~~~~~~~a~~~~~~G~~vll~iDei~r-~a~a~~ev~~-----~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~----- 154 (249)
T cd01128 86 QVAEMVLEKAKRLVEHGKDVVILLDSITR-LARAYNTVVP-----PSGKILSGGVDANALHKPKRFFGAARNIEE----- 154 (249)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECHHH-hhhhhhhccc-----cCCCCCCCCcChhhhhhhHHHHHHhcCCCC-----
Confidence 110 000 00100 011111 1122222222 2234579999 999999999876
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHH-HHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheeh
Q 016804 249 SVEPEVLLYDEPTAGLDPIASTV-VEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVII 327 (382)
Q Consensus 249 a~~P~iLLLDEPtagLD~~~~~~-l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~ 327 (382)
+++|.+| ||+.+|..+... +. +.++...+ .|.|++||++.....+
T Consensus 155 --~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~----------~~~ivls~~la~~~~~------------------ 200 (249)
T cd01128 155 --GGSLTII--ATALVDTGSRMDDVI--FEEFKGTG----------NMELVLDRRLAERRIF------------------ 200 (249)
T ss_pred --CCceEEe--eeheecCCCcccchH--HHHHhcCC----------CcEEEEchHHhhCCCC------------------
Confidence 5999999 999999655543 43 55555333 3899999999888765
Q ss_pred hccCCCCcccccccEEEEEeCCeEE
Q 016804 328 LGAVAPDKEVFFIYRLIFLYEGKIV 352 (382)
Q Consensus 328 ~~~~~~~~~~~~~~~ii~l~~G~i~ 352 (382)
|.|.+|+.|++.
T Consensus 201 -------------paI~vl~s~sr~ 212 (249)
T cd01128 201 -------------PAIDILKSGTRK 212 (249)
T ss_pred -------------CeEEEcCCCCcc
Confidence 566999999984
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.1e-12 Score=137.19 Aligned_cols=128 Identities=28% Similarity=0.391 Sum_probs=103.7
Q ss_pred HHHcCCcc-cccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCC
Q 016804 211 LAAVGLKG-VEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLAN 289 (382)
Q Consensus 211 L~~~gL~~-~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~ 289 (382)
|-.+||.- -++|...+|||||.||+.||.-+-.. .--=+++||||+.||-+..-+.+.+.|+.|+..|.
T Consensus 465 L~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~-----LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGN----- 534 (935)
T COG0178 465 LVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSG-----LTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGN----- 534 (935)
T ss_pred HHHcCcCcccccccCCCcChhHHHHHHHHHHhccc-----ceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCC-----
Confidence 44568864 36888999999999999999998542 33567899999999999999999999999998873
Q ss_pred CCCceEEEEEccCHHHHHHhhchhccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHH
Q 016804 290 PGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQ 369 (382)
Q Consensus 290 ~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~ 369 (382)
|+|+|.||-+.++ .||+|+= ||-- .=.+.|+|+++|++++++...+..+-
T Consensus 535 -----TviVVEHDedti~-~AD~iID------------iGPg------------AG~~GGeIv~~Gtp~~i~~~~~SlTG 584 (935)
T COG0178 535 -----TVIVVEHDEDTIR-AADHIID------------IGPG------------AGEHGGEIVAEGTPEELLANPESLTG 584 (935)
T ss_pred -----eEEEEecCHHHHh-hcCEEEe------------eCCC------------CCcCCCEEEEccCHHHHHhCCcchhh
Confidence 9999999988876 5787710 1100 12467999999999999987788999
Q ss_pred HHHcCCCCC
Q 016804 370 QFASGSLEG 378 (382)
Q Consensus 370 ~~~~~~~~~ 378 (382)
+|++|....
T Consensus 585 ~YLsg~~~i 593 (935)
T COG0178 585 QYLSGKKTI 593 (935)
T ss_pred HhhcCCccc
Confidence 999997654
|
|
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.1e-12 Score=122.27 Aligned_cols=152 Identities=20% Similarity=0.248 Sum_probs=94.2
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHH-HHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTI-LKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTL-LklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
+.++++.+.+++. +++|+++.|.|||||||||| +++++++.++... +.
T Consensus 8 ~~~~~ld~~l~gg---------i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~----------------------~~ 56 (230)
T PRK08533 8 LSRDELHKRLGGG---------IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYS----------------------VS 56 (230)
T ss_pred EEEeeeehhhCCC---------CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCc----------------------EE
Confidence 6677888877652 79999999999999999999 7999988764322 33
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
|+..+ .+..+.+..... .+++-++ .... +.-...+-.| .+|+++.++-.+++.+-.- ...
T Consensus 57 yi~~e------~~~~~~~~~~~~--~g~~~~~-------~~~~-~~l~~~~~~~-~~~~~~~~~~~l~~il~~~---~~~ 116 (230)
T PRK08533 57 YVSTQ------LTTTEFIKQMMS--LGYDINK-------KLIS-GKLLYIPVYP-LLSGNSEKRKFLKKLMNTR---RFY 116 (230)
T ss_pred EEeCC------CCHHHHHHHHHH--hCCchHH-------Hhhc-CcEEEEEecc-cccChHHHHHHHHHHHHHH---Hhc
Confidence 44311 233333333211 1111111 1111 1111122223 4677776666666554320 013
Q ss_pred CCcEEEEeCCCCCC----CHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHH
Q 016804 251 EPEVLLYDEPTAGL----DPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHST 305 (382)
Q Consensus 251 ~P~iLLLDEPtagL----D~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~ 305 (382)
+|+++++||||+++ |+...+.+.+.++.++++| .| +++||+...
T Consensus 117 ~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g----------~t-vi~t~~~~~ 164 (230)
T PRK08533 117 EKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLN----------KV-IILTANPKE 164 (230)
T ss_pred CCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCC----------CE-EEEEecccc
Confidence 69999999999999 8888889999999998766 34 555676554
|
|
| >TIGR00618 sbcc exonuclease SbcC | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.2e-13 Score=148.95 Aligned_cols=84 Identities=17% Similarity=0.177 Sum_probs=74.1
Q ss_pred CcccccCCCCCCChHHHHHHHHHHHHhc-------CCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCC
Q 016804 216 LKGVEDRLPSELSGGMKKRVALARSIIF-------DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLA 288 (382)
Q Consensus 216 L~~~~~~~~~~LSGGqrQRVaIArAL~~-------~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~ 288 (382)
+....++.+.+|||||++||+||+||+. . ..+|++||+||||++||+.+...++++|.++...|
T Consensus 940 ~~~~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~----~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g----- 1010 (1042)
T TIGR00618 940 AYTGSVRPSATLSGGETFLASLSLALALADLLSTSG----GTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGS----- 1010 (1042)
T ss_pred CCCCCcCCcccCCHHHHHHHHHHHHHHHHHHHhhcc----CCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCC-----
Confidence 3445677899999999999999999973 1 12699999999999999999999999999998765
Q ss_pred CCCCceEEEEEccCHHHHHHhhchh
Q 016804 289 NPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 289 ~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
.+|+||||+.+....++|+|
T Consensus 1011 -----~~i~iisH~~~~~~~~~~~i 1030 (1042)
T TIGR00618 1011 -----KMIGIISHVPEFRERIPHRI 1030 (1042)
T ss_pred -----CEEEEEeCcHHHHHhhCCEE
Confidence 58999999999999999988
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.6e-12 Score=142.47 Aligned_cols=139 Identities=20% Similarity=0.291 Sum_probs=98.6
Q ss_pred eeEEEe-CCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE-EEecCCCCCCCCCHHHH
Q 016804 110 VSFKIR-HGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG-LVFQSAALFDSLTVREN 187 (382)
Q Consensus 110 vsl~i~-~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig-~V~Q~~~l~~~lTV~en 187 (382)
.++.+. .+.++.|.|||++||||+||.++...- .. ++| +||-+.. ..+.++++
T Consensus 319 ndi~l~~~~~~~iITGpN~gGKTt~lktigl~~~---------------------ma--q~G~~vpa~~~--~~i~~~~~ 373 (782)
T PRK00409 319 KDISLGFDKTVLVITGPNTGGKTVTLKTLGLAAL---------------------MA--KSGLPIPANEP--SEIPVFKE 373 (782)
T ss_pred ceeEECCCceEEEEECCCCCCcHHHHHHHHHHHH---------------------HH--HhCCCcccCCC--ccccccce
Confidence 344444 457899999999999999999953310 00 223 4554321 11233344
Q ss_pred HHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHH
Q 016804 188 VGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPI 267 (382)
Q Consensus 188 i~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~ 267 (382)
|.. .+|-.+...+.++++|+||+|++.|++++- +|.++|+|||++|+||.
T Consensus 374 i~~----------------------~ig~~~si~~~lStfS~~m~~~~~Il~~~~--------~~sLvLlDE~~~GtDp~ 423 (782)
T PRK00409 374 IFA----------------------DIGDEQSIEQSLSTFSGHMTNIVRILEKAD--------KNSLVLFDELGAGTDPD 423 (782)
T ss_pred EEE----------------------ecCCccchhhchhHHHHHHHHHHHHHHhCC--------cCcEEEecCCCCCCCHH
Confidence 311 122333455678899999999999999993 59999999999999999
Q ss_pred HHHHHH-HHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 268 ASTVVE-DLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 268 ~~~~l~-~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
....+. .++..+.+.+ .++|++||+.+.....+++.
T Consensus 424 eg~ala~aile~l~~~~----------~~vIitTH~~el~~~~~~~~ 460 (782)
T PRK00409 424 EGAALAISILEYLRKRG----------AKIIATTHYKELKALMYNRE 460 (782)
T ss_pred HHHHHHHHHHHHHHHCC----------CEEEEECChHHHHHHHhcCC
Confidence 988885 4677777665 58999999999888877766
|
|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.7e-13 Score=138.70 Aligned_cols=79 Identities=24% Similarity=0.349 Sum_probs=62.4
Q ss_pred CCCCCCChHHHHHHHHHHHHhc-CC--CCCCCCCcEEEEeCCC-CCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEE
Q 016804 222 RLPSELSGGMKKRVALARSIIF-DN--TKESVEPEVLLYDEPT-AGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYV 297 (382)
Q Consensus 222 ~~~~~LSGGqrQRVaIArAL~~-~~--~~~a~~P~iLLLDEPt-agLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiI 297 (382)
..+.+||||||||++||+||+. +- .+...+|++||||||| ++||+..+..+.+.|.++ ++ .|+|
T Consensus 464 ~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~----------~~ii 531 (562)
T PHA02562 464 FSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KD----------TNVF 531 (562)
T ss_pred cChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CC----------CeEE
Confidence 3568999999999999999861 00 0000159999999998 789999999999999998 34 4999
Q ss_pred EEccCHHHHHHhhchh
Q 016804 298 VVTHQHSTIRRAVDRL 313 (382)
Q Consensus 298 ivTHdl~~~~~~aDrv 313 (382)
+|||+.+.. ..|||+
T Consensus 532 iish~~~~~-~~~d~~ 546 (562)
T PHA02562 532 VISHKDHDP-QKFDRH 546 (562)
T ss_pred EEECchhch-hhhhcE
Confidence 999997655 467877
|
|
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.2e-12 Score=138.77 Aligned_cols=74 Identities=20% Similarity=0.315 Sum_probs=64.0
Q ss_pred CCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHH
Q 016804 225 SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS 304 (382)
Q Consensus 225 ~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~ 304 (382)
..|||||+||++||++++..+. .+|++|||||||+|||+.....+.+.|+++.+ + .+||+|||++.
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~---~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~----------~~vi~iTH~~~ 504 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSS---AAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-R----------HQVLCVTHLPQ 504 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCC---CCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-C----------CEEEEEEChHH
Confidence 4789999999999999986310 13799999999999999999999999999975 4 49999999998
Q ss_pred HHHHhhchh
Q 016804 305 TIRRAVDRL 313 (382)
Q Consensus 305 ~~~~~aDrv 313 (382)
.+. +||++
T Consensus 505 ~~~-~ad~~ 512 (563)
T TIGR00634 505 VAA-HADAH 512 (563)
T ss_pred HHH-hcCeE
Confidence 875 78877
|
All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair. |
| >PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A | Back alignment and domain information |
|---|
Probab=99.34 E-value=5e-12 Score=114.11 Aligned_cols=67 Identities=27% Similarity=0.388 Sum_probs=53.1
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCCCCCCC-cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccC
Q 016804 224 PSELSGGMKKRVALARSIIFDNTKESVEP-EVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQ 302 (382)
Q Consensus 224 ~~~LSGGqrQRVaIArAL~~~~~~~a~~P-~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHd 302 (382)
...+|.|+||.+.|+.+|... .+. .++++|||-++|+|..+..+.+.|.++.+.+ .-+|++||.
T Consensus 234 ~~~~S~G~~~~l~l~~~l~~~-----~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~----------~QviitTHS 298 (303)
T PF13304_consen 234 LSSLSSGEKRLLSLLSLLLSA-----KKNGSILLIDEPENHLHPSWQRKLIELLKELSKKN----------IQVIITTHS 298 (303)
T ss_dssp GS---HHHHHHHHHHHHHHTT-----TTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGS----------SEEEEEES-
T ss_pred eccCCHHHHHHHHHHHHHhCc-----CCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccC----------CEEEEeCcc
Confidence 467799999999999998863 223 9999999999999999999999998887633 479999998
Q ss_pred HHH
Q 016804 303 HST 305 (382)
Q Consensus 303 l~~ 305 (382)
...
T Consensus 299 p~i 301 (303)
T PF13304_consen 299 PFI 301 (303)
T ss_dssp GGG
T ss_pred chh
Confidence 754
|
|
| >cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.1e-11 Score=114.91 Aligned_cols=144 Identities=17% Similarity=0.193 Sum_probs=91.7
Q ss_pred CCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCC
Q 016804 102 GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDS 181 (382)
Q Consensus 102 g~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~ 181 (382)
++..+-+|++|++++|++++|.||||+||||+++++++..-... -|-.+. .. ..+++++. .+|..
T Consensus 15 ~~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~-----~G~~vp----a~---~~~i~~~~---~i~~~ 79 (218)
T cd03286 15 ASSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQ-----MGMDVP----AK---SMRLSLVD---RIFTR 79 (218)
T ss_pred CCCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHH-----cCCccC----cc---ccEecccc---EEEEe
Confidence 35678999999999999999999999999999999987643211 011110 00 01233221 12223
Q ss_pred CCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCC
Q 016804 182 LTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPT 261 (382)
Q Consensus 182 lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPt 261 (382)
+...|++..+.. .+. -|-+++ ++.|-. +.+|.++|+|||+
T Consensus 80 ~~~~d~~~~~~S--------------------------------tF~-~e~~~~--~~il~~-----~~~~sLvLlDE~~ 119 (218)
T cd03286 80 IGARDDIMKGES--------------------------------TFM-VELSET--ANILRH-----ATPDSLVILDELG 119 (218)
T ss_pred cCcccccccCcc--------------------------------hHH-HHHHHH--HHHHHh-----CCCCeEEEEeccc
Confidence 333344432110 010 112222 222211 1269999999999
Q ss_pred CCCCHHHHHHHHHH-HHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhh
Q 016804 262 AGLDPIASTVVEDL-IRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAV 310 (382)
Q Consensus 262 agLD~~~~~~l~~l-L~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~a 310 (382)
+|+|+.....+... ++.|.+. + .++|++||+++.+..++
T Consensus 120 ~Gt~~~dg~~la~ail~~L~~~~~----------~~~i~~TH~~el~~~~~ 160 (218)
T cd03286 120 RGTSTHDGYAIAHAVLEYLVKKVK----------CLTLFSTHYHSLCDEFH 160 (218)
T ss_pred CCCCchHHHHHHHHHHHHHHHhcC----------CcEEEEeccHHHHHHhh
Confidence 99999998888888 7777764 4 58999999999988875
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.1e-11 Score=111.59 Aligned_cols=86 Identities=17% Similarity=0.208 Sum_probs=67.3
Q ss_pred HHcCCcccccCCCCCCChHHHH-----HHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCC---HHHHHHHHHHHHHHHHcC
Q 016804 212 AAVGLKGVEDRLPSELSGGMKK-----RVALARSIIFDNTKESVEPEVLLYDEPTAGLD---PIASTVVEDLIRSVHKKG 283 (382)
Q Consensus 212 ~~~gL~~~~~~~~~~LSGGqrQ-----RVaIArAL~~~~~~~a~~P~iLLLDEPtagLD---~~~~~~l~~lL~~l~~~g 283 (382)
...|.....+..+..+|+|++| +..+.+++.. .+|+++++|||++.+| ...+..+.++++.+++.|
T Consensus 57 ~~~g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~------~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g 130 (187)
T cd01124 57 EDEGLLAIVDADPDEIGPAESSLRLELIQRLKDAIEE------FKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFG 130 (187)
T ss_pred HhcCCeEEEecCccccchhhhhhhHHHHHHHHHHHHH------hCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCC
Confidence 3456556678889999999998 3444444432 3799999999999999 888888999999998776
Q ss_pred CCCCCCCCCceEEEEEccCHHH---------HHHhhchh
Q 016804 284 ENGLANPGNIASYVVVTHQHST---------IRRAVDRL 313 (382)
Q Consensus 284 ~~~~~~~~~~~tiIivTHdl~~---------~~~~aDrv 313 (382)
.|+|+++|+... +..+||.+
T Consensus 131 ----------~tvi~v~~~~~~~~~~~~~~~~~~~aD~i 159 (187)
T cd01124 131 ----------VTTLLTSEQSGLEGTGFGGGDVEYLVDGV 159 (187)
T ss_pred ----------CEEEEEeccccCCCcccCcCceeEeeeEE
Confidence 599999998765 55666666
|
A related protein is found in archaea. |
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.9e-12 Score=115.43 Aligned_cols=81 Identities=12% Similarity=0.135 Sum_probs=61.6
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCC--CCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEE
Q 016804 222 RLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEP--TAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVV 299 (382)
Q Consensus 222 ~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEP--tagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIiv 299 (382)
++...|||+++-++.+++..+. +|+++++||| +.++|+. +.+.+.++.+.+ .++|++
T Consensus 74 ~~~~~lsgle~~~~~l~~~~l~-------~~~~lllDE~~~~e~~~~~----~~~~l~~~~~~~----------~~~i~v 132 (174)
T PRK13695 74 KYVVNLEDLERIGIPALERALE-------EADVIIIDEIGKMELKSPK----FVKAVEEVLDSE----------KPVIAT 132 (174)
T ss_pred eEEEehHHHHHHHHHHHHhccC-------CCCEEEEECCCcchhhhHH----HHHHHHHHHhCC----------CeEEEE
Confidence 4455799999999999988875 6999999995 4455443 456666665555 489999
Q ss_pred ccCHHHHHHhhchhccccccccchheehhccCCCCcccccccEEEEEeCCeEEEE
Q 016804 300 THQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQ 354 (382)
Q Consensus 300 THdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~ 354 (382)
+|+. .+...+|++ ..+++|+|.+-
T Consensus 133 ~h~~-~~~~~~~~i------------------------------~~~~~~~i~~~ 156 (174)
T PRK13695 133 LHRR-SVHPFVQEI------------------------------KSRPGGRVYEL 156 (174)
T ss_pred ECch-hhHHHHHHH------------------------------hccCCcEEEEE
Confidence 9994 555678887 88999998765
|
|
| >PRK10869 recombination and repair protein; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=7e-12 Score=132.75 Aligned_cols=73 Identities=27% Similarity=0.390 Sum_probs=63.1
Q ss_pred CCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHH
Q 016804 226 ELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHST 305 (382)
Q Consensus 226 ~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~ 305 (382)
.|||||+||++||++++..+ ..+|+++|||||++|||......+.+.|+++.+. .+||+|||++..
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~---~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~-----------~qvi~iTH~~~~ 495 (553)
T PRK10869 430 VASGGELSRIALAIQVITAR---KMETPALIFDEVDVGISGPTAAVVGKLLRQLGES-----------TQVMCVTHLPQV 495 (553)
T ss_pred hCCHHHHHHHHHHHHHHhcc---CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcC-----------CEEEEEecCHHH
Confidence 47999999999999999520 1258999999999999999999999999999653 489999999987
Q ss_pred HHHhhchh
Q 016804 306 IRRAVDRL 313 (382)
Q Consensus 306 ~~~~aDrv 313 (382)
+ .+||+.
T Consensus 496 ~-~~ad~~ 502 (553)
T PRK10869 496 A-GCGHQH 502 (553)
T ss_pred H-HhCCEE
Confidence 6 688877
|
|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.6e-11 Score=136.37 Aligned_cols=78 Identities=29% Similarity=0.375 Sum_probs=64.5
Q ss_pred CCCCCCChHHHHHHHH------HHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCce
Q 016804 222 RLPSELSGGMKKRVAL------ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIA 294 (382)
Q Consensus 222 ~~~~~LSGGqrQRVaI------ArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~ 294 (382)
..+..||||||+|++| ||+|+. +|++++|||||++||+..+..+.++|...... +. ..
T Consensus 797 ~~~~~lS~G~~~~~~la~rlala~~l~~-------~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~--------~~ 861 (895)
T PRK01156 797 EGIDSLSGGEKTAVAFALRVAVAQFLNN-------DKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSD--------IP 861 (895)
T ss_pred CccccCCHhHHHHHHHHHHHHHHHHhcc-------CCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCC--------CC
Confidence 4688999999999975 488886 59999999999999999999999999865433 21 13
Q ss_pred EEEEEccCHHHHHHhhchhcc
Q 016804 295 SYVVVTHQHSTIRRAVDRLCL 315 (382)
Q Consensus 295 tiIivTHdl~~~~~~aDrv~~ 315 (382)
++|+||||.+.+ .+||+++.
T Consensus 862 ~ii~ish~~~~~-~~~d~ii~ 881 (895)
T PRK01156 862 QVIMISHHRELL-SVADVAYE 881 (895)
T ss_pred eEEEEECchHHH-HhcCeEEE
Confidence 899999999876 58998843
|
|
| >PRK06793 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.7e-11 Score=124.38 Aligned_cols=175 Identities=21% Similarity=0.240 Sum_probs=116.3
Q ss_pred eEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 91 LIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 91 ~I~~~nvs~~yg-~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
.++.+.++..|. +..+++++ |.+.+|+.++|+|+||+|||||+++|+|..+|+.|.|.+.|+.
T Consensus 130 ~~~r~~i~~~l~TGiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGer--------------- 193 (432)
T PRK06793 130 AFEREEITDVFETGIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGER--------------- 193 (432)
T ss_pred chheechhhccCCCCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCC---------------
Confidence 367788888885 35688885 9999999999999999999999999999999998877766642
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc-cccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~-~~~~~~~~LSGGqrQRVaIArAL~~~~~~~ 248 (382)
..+|.|++...+. .-++.. ..=...++.|.|+|+|++.+.+.+...-.+
T Consensus 194 -----------g~ev~e~~~~~l~-------------------~~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~ 243 (432)
T PRK06793 194 -----------GREVKDFIRKELG-------------------EEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRD 243 (432)
T ss_pred -----------cccHHHHHHHHhh-------------------hcccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 1356666543211 001110 111446788999999999988876100000
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehh
Q 016804 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIIL 328 (382)
Q Consensus 249 a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~ 328 (382)
..++-+|++|+||...|+. +++...+.+.-..| -+..+.||. .++++|...+. .|+|-.++.+
T Consensus 244 ~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G----------~~~~~~s~l----~~L~ERag~~~-~GSiT~~~tv 306 (432)
T PRK06793 244 QGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGG----------KTLLMESYM----KKLLERSGKTQ-KGSITGIYTV 306 (432)
T ss_pred cCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCC----------eeeeeeccc----hhHHHHhccCC-CcceEEEEEE
Confidence 1369999999999999995 55555555443223 477777883 44555552222 4444444443
|
|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.8e-11 Score=141.08 Aligned_cols=75 Identities=23% Similarity=0.312 Sum_probs=65.9
Q ss_pred CCCCCCChHHHH------HHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-----cCCCCCCCC
Q 016804 222 RLPSELSGGMKK------RVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHK-----KGENGLANP 290 (382)
Q Consensus 222 ~~~~~LSGGqrQ------RVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~-----~g~~~~~~~ 290 (382)
..+..||||||| |++|||||+. +|++|+|||||++||+.+...+.+.|..+.. .|
T Consensus 1195 ~~~~~lS~Gq~~~~~~~~rlala~~~~~-------~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~------- 1260 (1311)
T TIGR00606 1195 DMRGRCSAGQKVLASLIIRLALAETFCL-------NCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRN------- 1260 (1311)
T ss_pred CCCCCCchhhhhHhhHhHHHHHHHHHhc-------CCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccC-------
Confidence 345789999999 9999999997 6999999999999999999999999988743 13
Q ss_pred CCceEEEEEccCHHHHHHhhchh
Q 016804 291 GNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 291 ~~~~tiIivTHdl~~~~~~aDrv 313 (382)
.++|+||||++++..+|.+.
T Consensus 1261 ---~~viiitHd~~~~~~~~~~~ 1280 (1311)
T TIGR00606 1261 ---FQLLVITHDEDFVELLGRSE 1280 (1311)
T ss_pred ---CeEEEEecCHHHHHHHhhcc
Confidence 59999999999999997543
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.2e-11 Score=136.67 Aligned_cols=75 Identities=27% Similarity=0.345 Sum_probs=63.6
Q ss_pred cCCCCCCChHHHHHH------HHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCce
Q 016804 221 DRLPSELSGGMKKRV------ALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIA 294 (382)
Q Consensus 221 ~~~~~~LSGGqrQRV------aIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~ 294 (382)
++++..|||||+|++ +||++++. +|+++||||||++||+..+..+.++|..+...+ .
T Consensus 783 ~~~~~~lS~G~~~~~~la~rlal~~~l~~-------~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~----------~ 845 (880)
T PRK03918 783 ERPLTFLSGGERIALGLAFRLALSLYLAG-------NIPLLILDEPTPFLDEERRRKLVDIMERYLRKI----------P 845 (880)
T ss_pred cCChhhCCHhHHHHHHHHHHHHHHHHhcC-------CCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcC----------C
Confidence 466789999999954 55556764 699999999999999999999999999987655 4
Q ss_pred EEEEEccCHHHHHHhhchh
Q 016804 295 SYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 295 tiIivTHdl~~~~~~aDrv 313 (382)
++|+||||.+. ..+||++
T Consensus 846 ~iiiith~~~~-~~~~d~~ 863 (880)
T PRK03918 846 QVIIVSHDEEL-KDAADYV 863 (880)
T ss_pred EEEEEECCHHH-HHhCCeE
Confidence 89999999875 5689888
|
|
| >PRK13830 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.7e-11 Score=130.03 Aligned_cols=79 Identities=15% Similarity=0.243 Sum_probs=57.6
Q ss_pred cccCCCCCCChHHHHHHHHHHHHhcCC---------------CCCCCCCcEEEEeCCCCCC-CHHHHHHHHHHHHHHHHc
Q 016804 219 VEDRLPSELSGGMKKRVALARSIIFDN---------------TKESVEPEVLLYDEPTAGL-DPIASTVVEDLIRSVHKK 282 (382)
Q Consensus 219 ~~~~~~~~LSGGqrQRVaIArAL~~~~---------------~~~a~~P~iLLLDEPtagL-D~~~~~~l~~lL~~l~~~ 282 (382)
+.+.....||.|+.|.+.|...+-... .....+|+++++|||+.+| |+.....+.+.++++++.
T Consensus 605 lfd~~~d~l~~~~~~~fdl~~Ll~~~~~~~~~vl~yl~~ri~~~l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~ 684 (818)
T PRK13830 605 LLDAEEDGLALGAFQTFEIEELMNMGERNLVPVLTYLFRRIEKRLTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKA 684 (818)
T ss_pred ecCCCccccCccceEEEEhhhhhcCchhHHHHHHHHHHHHHHHhcCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHc
Confidence 345555678887656554443320000 0002479999999999999 799999999999999887
Q ss_pred CCCCCCCCCCceEEEEEccCHHHHH
Q 016804 283 GENGLANPGNIASYVVVTHQHSTIR 307 (382)
Q Consensus 283 g~~~~~~~~~~~tiIivTHdl~~~~ 307 (382)
+ .+++++||+++.+.
T Consensus 685 ~----------~~vil~Tq~~~d~~ 699 (818)
T PRK13830 685 N----------CAVVLATQSISDAE 699 (818)
T ss_pred C----------CEEEEEeCCHHHHh
Confidence 6 48999999999986
|
|
| >TIGR03238 dnd_assoc_3 dnd system-associated protein 3 | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.7e-12 Score=132.32 Aligned_cols=67 Identities=21% Similarity=0.305 Sum_probs=56.3
Q ss_pred eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc-EEEECCEECCCCCChhhhccceEEEEecCC
Q 016804 105 HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG-EVYIRGRKRAGLISDEEISGLRIGLVFQSA 176 (382)
Q Consensus 105 ~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG-~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~ 176 (382)
.+|++|||++++||+++|+|||||||||||+ +|+..|++| +|.++|+++... ....+...+ +|||+.
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~-~~~ai~~LR--~VFQ~f 87 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSP-NKNAMETLD--EIFDGF 87 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCC-CHHHHHHHH--HHHHhh
Confidence 5899999999999999999999999999999 788889988 799999998764 333333334 888875
|
cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. |
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.5e-11 Score=135.88 Aligned_cols=82 Identities=23% Similarity=0.253 Sum_probs=65.7
Q ss_pred ccCCCCCCChHHHHHHHHHHHHhc-CCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEE
Q 016804 220 EDRLPSELSGGMKKRVALARSIIF-DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVV 298 (382)
Q Consensus 220 ~~~~~~~LSGGqrQRVaIArAL~~-~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIi 298 (382)
.++.+.+|||||+++++||+||+. |-.....+|++||+||||++||+.+...+++.|..+.+.| +||+|
T Consensus 943 ~~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g----------~~v~i 1012 (1047)
T PRK10246 943 AVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASG----------KTIGV 1012 (1047)
T ss_pred CCCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCC----------CEEEE
Confidence 458899999999999999999983 0000002599999999999999999999999999998776 59999
Q ss_pred EccCHHHHHHhhc
Q 016804 299 VTHQHSTIRRAVD 311 (382)
Q Consensus 299 vTHdl~~~~~~aD 311 (382)
|||......++..
T Consensus 1013 isH~~~l~~~i~~ 1025 (1047)
T PRK10246 1013 ISHVEAMKERIPV 1025 (1047)
T ss_pred EecHHHHHHhccc
Confidence 9996555444433
|
|
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=99.22 E-value=3e-11 Score=119.05 Aligned_cols=43 Identities=26% Similarity=0.408 Sum_probs=39.4
Q ss_pred eeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC
Q 016804 110 VSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG 152 (382)
Q Consensus 110 vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G 152 (382)
+++.++.|+.++|+||+|||||||+++|+++++++.|.+.+..
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied 179 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIED 179 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcC
Confidence 5577889999999999999999999999999999999888864
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >COG3910 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.1e-10 Score=107.35 Aligned_cols=69 Identities=20% Similarity=0.311 Sum_probs=59.0
Q ss_pred ccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEE
Q 016804 220 EDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVV 299 (382)
Q Consensus 220 ~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIiv 299 (382)
..+.....|-||-=---+.+.+- +.-+.|||||-|+|.|.-+.+++..|+++.+.| .-+||+
T Consensus 123 ~~~sLh~~SHGEsf~~i~~~rf~--------~~GiYiLDEPEa~LSp~RQlella~l~~la~sG----------aQ~IiA 184 (233)
T COG3910 123 GGRSLHHMSHGESFLAIFHNRFN--------GQGIYILDEPEAALSPSRQLELLAILRDLADSG----------AQIIIA 184 (233)
T ss_pred CCcchhhhccchHHHHHHHHHhc--------cCceEEecCccccCCHHHHHHHHHHHHHHHhcC----------CeEEEE
Confidence 34445678999988888888886 479999999999999999999999999999987 479999
Q ss_pred ccCHHHH
Q 016804 300 THQHSTI 306 (382)
Q Consensus 300 THdl~~~ 306 (382)
||..=..
T Consensus 185 THSPiLl 191 (233)
T COG3910 185 THSPILL 191 (233)
T ss_pred ecChhhe
Confidence 9986443
|
|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.2e-11 Score=135.51 Aligned_cols=77 Identities=29% Similarity=0.380 Sum_probs=67.2
Q ss_pred cccCCCCCCChHHHHHHHHHHHHh---cCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceE
Q 016804 219 VEDRLPSELSGGMKKRVALARSII---FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIAS 295 (382)
Q Consensus 219 ~~~~~~~~LSGGqrQRVaIArAL~---~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~t 295 (382)
..+.++..||||||||++||++++ . ..|+++||||||++||+..+..+.++|.++++. .+
T Consensus 1082 ~~~~~~~~lS~g~~~~~~l~~~~~~~~~------~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~-----------~~ 1144 (1179)
T TIGR02168 1082 KKNQNLSLLSGGEKALTALALLFAIFKV------KPAPFCILDEVDAPLDDANVERFANLLKEFSKN-----------TQ 1144 (1179)
T ss_pred CccccccccCccHHHHHHHHHHHHHHcc------CCCCeEEecCccccccHHHHHHHHHHHHHhccC-----------CE
Confidence 345678999999999999999984 2 257999999999999999999999999998654 38
Q ss_pred EEEEccCHHHHHHhhchh
Q 016804 296 YVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 296 iIivTHdl~~~~~~aDrv 313 (382)
+|||||+++.+ .+||++
T Consensus 1145 ~i~~sh~~~~~-~~~d~~ 1161 (1179)
T TIGR02168 1145 FIVITHNKGTM-EVADQL 1161 (1179)
T ss_pred EEEEEcChhHH-HHhhhH
Confidence 99999999976 579998
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. |
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.6e-10 Score=130.31 Aligned_cols=79 Identities=25% Similarity=0.280 Sum_probs=65.9
Q ss_pred cCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEc
Q 016804 221 DRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVT 300 (382)
Q Consensus 221 ~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivT 300 (382)
.+.+..||||||++++||++|+.. ....|+++|||||+++||+.++..+.++|.++.+. .++|++|
T Consensus 1069 ~~~~~~lSgge~~~~~la~~~~~~---~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~-----------~~~i~~t 1134 (1164)
T TIGR02169 1069 VQRLEAMSGGEKSLTALSFIFAIQ---RYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGE-----------AQFIVVS 1134 (1164)
T ss_pred CCcchhcCcchHHHHHHHHHHHHH---hcCCCCcEEecccccccCHHHHHHHHHHHHHhcCC-----------CeEEEEE
Confidence 345679999999999999999730 01258999999999999999999999999998654 3799999
Q ss_pred cCHHHHHHhhchhc
Q 016804 301 HQHSTIRRAVDRLC 314 (382)
Q Consensus 301 Hdl~~~~~~aDrv~ 314 (382)
|+...+ .+||+++
T Consensus 1135 ~~~~~~-~~~d~~~ 1147 (1164)
T TIGR02169 1135 LRSPMI-EYADRAI 1147 (1164)
T ss_pred CcHHHH-HhcceeE
Confidence 998755 7899883
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. |
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.2e-10 Score=97.96 Aligned_cols=131 Identities=16% Similarity=0.119 Sum_probs=77.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKM 198 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~ 198 (382)
++.|.||||+||||+++.+++...+..|.|.+.+ .+.... ...++... .
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~---------------------~e~~~~---~~~~~~~~-------~ 49 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD---------------------IEEEIE---ELTERLIG-------E 49 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE---------------------CCcchH---HHHHHHhh-------h
Confidence 3689999999999999999998876555554433 221111 01111100 0
Q ss_pred CHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCC----------CCCHHH
Q 016804 199 RDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA----------GLDPIA 268 (382)
Q Consensus 199 ~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPta----------gLD~~~ 268 (382)
... ...+...+........+.++.++++.+++... +|+++++||+++ +.|...
T Consensus 50 ~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~lviDe~~~~~~~~~~~~~~~~~~~ 112 (165)
T cd01120 50 SLK----------GALDNLIIVFATADDPAAARLLSKAERLRERG-------GDDLIILDELTRLVRALREIREGYPGEL 112 (165)
T ss_pred hhc----------cccccEEEEEcCCCCCcHHHHHHHHHHHHhCC-------CCEEEEEEcHHHHHHHHHHHHhcCChHH
Confidence 000 00011112223333445556667777777765 699999999995 445555
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHH
Q 016804 269 STVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIR 307 (382)
Q Consensus 269 ~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~ 307 (382)
...+.+++..+.+.+ .|+|+++|......
T Consensus 113 ~~~l~~l~~~~~~~~----------~~vv~~~~~~~~~~ 141 (165)
T cd01120 113 DEELRELLERARKGG----------VTVIFTLQVPSGDK 141 (165)
T ss_pred HHHHHHHHHHHhcCC----------ceEEEEEecCCccc
Confidence 666666666654444 69999999875543
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=99.00 E-value=8.4e-10 Score=114.89 Aligned_cols=147 Identities=15% Similarity=0.258 Sum_probs=92.1
Q ss_pred eeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHH
Q 016804 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVR 185 (382)
Q Consensus 106 iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~ 185 (382)
++++.++.+++|++++++||||+||||++..|++.+....|. .+|++|.+++ | ..++.
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~-------------------~kV~LI~~Dt--~-RigA~ 302 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA-------------------SKVALLTTDS--Y-RIGGH 302 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC-------------------CeEEEEeCCc--c-chhHH
Confidence 566777788899999999999999999999999887655442 1488999887 3 46899
Q ss_pred HHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHH-HHHHHHHHhcCCCCCCCCCcEEEEeCCCCCC
Q 016804 186 ENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKK-RVALARSIIFDNTKESVEPEVLLYDEPTAGL 264 (382)
Q Consensus 186 eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQ-RVaIArAL~~~~~~~a~~P~iLLLDEPtagL 264 (382)
|++.+..... +.+........+......++.+.....+.+...+++. .+.-+.+++.+... ..+ .+|+||.++.+
T Consensus 303 EQLr~~Aeil-GVpv~~~~~~~Dl~~aL~~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~-p~e-~~LVLdAt~~~- 378 (484)
T PRK06995 303 EQLRIYGKIL-GVPVHAVKDAADLRLALSELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGA-PVK-RLLLLNATSHG- 378 (484)
T ss_pred HHHHHHHHHh-CCCeeccCCchhHHHHHHhccCCCeEEeCCCCcChhhHHHHHHHHHHhccCC-CCe-eEEEEeCCCcH-
Confidence 9998865432 1221111222333445566766555666675444432 23334444432100 011 78999999887
Q ss_pred CHHHHHHHHHHHHHHHHcC
Q 016804 265 DPIASTVVEDLIRSVHKKG 283 (382)
Q Consensus 265 D~~~~~~l~~lL~~l~~~g 283 (382)
..+.+.++.+...+
T Consensus 379 -----~~l~~i~~~f~~~~ 392 (484)
T PRK06995 379 -----DTLNEVVQAYRGPG 392 (484)
T ss_pred -----HHHHHHHHHhccCC
Confidence 33455555554443
|
|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=9.7e-10 Score=121.86 Aligned_cols=79 Identities=33% Similarity=0.423 Sum_probs=63.9
Q ss_pred CCCCCChHHHH------HHHHHHHHhcCCCCCCCC-CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceE
Q 016804 223 LPSELSGGMKK------RVALARSIIFDNTKESVE-PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIAS 295 (382)
Q Consensus 223 ~~~~LSGGqrQ------RVaIArAL~~~~~~~a~~-P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~t 295 (382)
.+..||||||| |++||++++.... ... ++++||||||++||+..+..+.++|..+...|. .+
T Consensus 778 ~~~~lS~G~~~~~~lalr~a~~~~~~~~~~--~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~---------~q 846 (880)
T PRK02224 778 EPEQLSGGERALFNLSLRCAIYRLLAEGIE--GDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGV---------EQ 846 (880)
T ss_pred ChhhcCccHHHHHHHHHHHHHHHHhhhccc--CCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCC---------Ce
Confidence 36799999999 9999999874100 001 267999999999999999999999999976542 37
Q ss_pred EEEEccCHHHHHHhhchh
Q 016804 296 YVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 296 iIivTHdl~~~~~~aDrv 313 (382)
||+||||.+.+. .||++
T Consensus 847 viiish~~~~~~-~ad~~ 863 (880)
T PRK02224 847 IVVVSHDDELVG-AADDL 863 (880)
T ss_pred EEEEECChHHHH-hcCee
Confidence 999999998885 68887
|
|
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.4e-09 Score=98.48 Aligned_cols=150 Identities=15% Similarity=0.107 Sum_probs=85.6
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHH-cCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhh
Q 016804 113 KIRHGEAVGIIGPSGTGKSTILKIIA-GLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFL 191 (382)
Q Consensus 113 ~i~~Ge~vaLiGpNGaGKSTLLklI~-Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~ 191 (382)
-+++|.++.|.|++|||||||...++ +... ..+ ++.|+..+. +..+-+.-.
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~g~---------------------~~~y~~~e~------~~~~~~~~~ 72 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALK-QGK---------------------KVYVITTEN------TSKSYLKQM 72 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHh-CCC---------------------EEEEEEcCC------CHHHHHHHH
Confidence 48899999999999999999998885 2111 111 244554321 222221110
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCC---CCHHH
Q 016804 192 LYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAG---LDPIA 268 (382)
Q Consensus 192 ~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtag---LD~~~ 268 (382)
. ..+++-.+. .....+ .+.+..-......|.++++.+..++.++.. .+|+++++||||+. +|...
T Consensus 73 ~--~~g~~~~~~--~~~g~l---~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~-----~~~~~iviDs~t~~~~~~~~~~ 140 (234)
T PRK06067 73 E--SVKIDISDF--FLWGYL---RIFPLNTEGFEWNSTLANKLLELIIEFIKS-----KREDVIIIDSLTIFATYAEEDD 140 (234)
T ss_pred H--HCCCChhHH--HhCCCc---eEEeccccccccCcchHHHHHHHHHHHHHh-----cCCCEEEEecHHHHHhcCCHHH
Confidence 0 011111110 000001 111111112234578899999999999862 47999999999964 44555
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhch
Q 016804 269 STVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDR 312 (382)
Q Consensus 269 ~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDr 312 (382)
...+.+.++.+++++ .|+++++|+.......+++
T Consensus 141 ~~~~l~~l~~l~~~g----------~tvllt~~~~~~~~~~~~~ 174 (234)
T PRK06067 141 ILNFLTEAKNLVDLG----------KTILITLHPYAFSEELLSR 174 (234)
T ss_pred HHHHHHHHHHHHhCC----------CEEEEEecCCcCCHHHHHH
Confidence 555555566666665 5899999976553333333
|
|
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.4e-09 Score=99.35 Aligned_cols=82 Identities=18% Similarity=0.233 Sum_probs=61.4
Q ss_pred eEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCC--CCCCCCCH
Q 016804 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSA--ALFDSLTV 184 (382)
Q Consensus 107 L~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~--~l~~~lTV 184 (382)
.+=+.+.+++|+.++|+||||||||||+++|+|+++|+.|.|.+.+..-... . .+..+++++|.. ..++..+.
T Consensus 15 ~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~--~---~~~~~~~~~~~~~~~~~~~~~~ 89 (186)
T cd01130 15 AAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQL--P---HPNWVRLVTRPGNVEGSGEVTM 89 (186)
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCC--C---CCCEEEEEEecCCCCCCCccCH
Confidence 3345567899999999999999999999999999999999999987532211 1 122467776654 34666788
Q ss_pred HHHHHhhHh
Q 016804 185 RENVGFLLY 193 (382)
Q Consensus 185 ~eni~~~~~ 193 (382)
.+.+...++
T Consensus 90 ~~~l~~~lR 98 (186)
T cd01130 90 ADLLRSALR 98 (186)
T ss_pred HHHHHHHhc
Confidence 888876553
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >PRK06002 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.8e-09 Score=111.33 Aligned_cols=86 Identities=22% Similarity=0.283 Sum_probs=68.6
Q ss_pred ceEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC---EECCCCCChh--h
Q 016804 90 VLIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG---RKRAGLISDE--E 163 (382)
Q Consensus 90 ~~I~~~nvs~~yg-~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G---~~i~~~~~~~--~ 163 (382)
..++.+++++.|. +..+++.++ .|.+||+++|+||||||||||+++|+++.+|+.|.|.+.| +++..+.... .
T Consensus 138 ~~~~r~~v~~~l~TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l~~ 216 (450)
T PRK06002 138 PAMTRARVETGLRTGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTLAD 216 (450)
T ss_pred CCeEeecceEEcCCCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHHHH
Confidence 3589999999995 467999996 9999999999999999999999999999999999999864 5443321111 1
Q ss_pred hccceEEEEecCC
Q 016804 164 ISGLRIGLVFQSA 176 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~ 176 (382)
..++.|+||+|..
T Consensus 217 ~r~rtI~vV~qsd 229 (450)
T PRK06002 217 NLKKAVAVVATSD 229 (450)
T ss_pred hhCCeEEEEEcCC
Confidence 1223699999965
|
|
| >PRK07196 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.4e-09 Score=111.85 Aligned_cols=89 Identities=20% Similarity=0.283 Sum_probs=67.6
Q ss_pred CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccE---EEECCEECCCCCChh----hhccceEEEEecC
Q 016804 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE---VYIRGRKRAGLISDE----EISGLRIGLVFQS 175 (382)
Q Consensus 103 ~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~---I~i~G~~i~~~~~~~----~~~~~~Ig~V~Q~ 175 (382)
+..+++++ |++.+|++++|+||||||||||+++|+|+.+++.+. |-.+|+++....... ...+..+++++|+
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d 220 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPAD 220 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCC
Confidence 46799999 999999999999999999999999999999998643 333443332211110 1123359999999
Q ss_pred CCCCCCCCHHHHHHhhH
Q 016804 176 AALFDSLTVRENVGFLL 192 (382)
Q Consensus 176 ~~l~~~lTV~eni~~~~ 192 (382)
...+..+++.+++.+..
T Consensus 221 ~s~~~rl~a~e~a~~iA 237 (434)
T PRK07196 221 ESPLMRIKATELCHAIA 237 (434)
T ss_pred CChhhhHHHHHHHHHHH
Confidence 99998899999987644
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.3e-08 Score=79.56 Aligned_cols=119 Identities=28% Similarity=0.406 Sum_probs=78.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCCCc-cEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhHhh
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLLAPDK-GEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYE 194 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~s-G~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~ 194 (382)
.+..+.|+||+|+||||+++.|+..+.... +-+.++....... ......
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-------------------------- 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEE----VLDQLL-------------------------- 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEcccc----CHHHHH--------------------------
Confidence 467899999999999999999999987665 4555555432110 000000
Q ss_pred cCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHH
Q 016804 195 NSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVED 274 (382)
Q Consensus 195 ~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~ 274 (382)
............+++..+..+++|--. +|.++++||+..-.+.........
T Consensus 51 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~viiiDei~~~~~~~~~~~~~~ 101 (148)
T smart00382 51 ----------------------LIIVGGKKASGSGELRLRLALALARKL-------KPDVLILDEITSLLDAEQEALLLL 101 (148)
T ss_pred ----------------------hhhhhccCCCCCHHHHHHHHHHHHHhc-------CCCEEEEECCcccCCHHHHHHHHh
Confidence 111222334677888888888888864 479999999999999988876664
Q ss_pred H-----HHHHHHcCCCCCCCCCCceEEEEEccC
Q 016804 275 L-----IRSVHKKGENGLANPGNIASYVVVTHQ 302 (382)
Q Consensus 275 l-----L~~l~~~g~~~~~~~~~~~tiIivTHd 302 (382)
. ......... ..+|.++|.
T Consensus 102 ~~~~~~~~~~~~~~~---------~~~i~~~~~ 125 (148)
T smart00382 102 LEELRLLLLLKSEKN---------LTVILTTND 125 (148)
T ss_pred hhhhHHHHHHHhcCC---------CEEEEEeCC
Confidence 1 222222221 478888884
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.6e-11 Score=124.03 Aligned_cols=158 Identities=16% Similarity=0.235 Sum_probs=101.8
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHH--HcCCCCCccEEEECCEECCCCCChhhhc--cceEEEEecCCCCCCCCCHHHHH
Q 016804 113 KIRHGEAVGIIGPSGTGKSTILKII--AGLLAPDKGEVYIRGRKRAGLISDEEIS--GLRIGLVFQSAALFDSLTVRENV 188 (382)
Q Consensus 113 ~i~~Ge~vaLiGpNGaGKSTLLklI--~Gl~~p~sG~I~i~G~~i~~~~~~~~~~--~~~Ig~V~Q~~~l~~~lTV~eni 188 (382)
=+++|..+.|.||+|||||||..-+ .|..+..+.-+++...+ +..+.. ...+||-+++..-- +++
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE-----~~~~l~~~~~~~G~~~~~~~~~------g~l 85 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEE-----SPQDIIKNARSFGWDLQKLVDE------GKL 85 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEec-----CHHHHHHHHHHcCCCHHHHhhc------Cce
Confidence 3789999999999999999999876 56666566777776643 122211 11366655532100 011
Q ss_pred HhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHH--HHHhcCCCCCCCCCcEEEEeCCCCCCCH
Q 016804 189 GFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALA--RSIIFDNTKESVEPEVLLYDEPTAGLDP 266 (382)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIA--rAL~~~~~~~a~~P~iLLLDEPtagLD~ 266 (382)
.+ . . ..... ....+++.+++.+..++.+..+|+|++|||.|+ .+|.. .|+.. .
T Consensus 86 ~~-~---~-~~~~~---~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~-------~~~~~----------~ 140 (484)
T TIGR02655 86 FI-L---D-ASPDP---EGQDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQ-------QYDAV----------S 140 (484)
T ss_pred EE-E---e-cCchh---ccccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhh-------hcCch----------H
Confidence 10 0 0 00000 011245566777788888999999999999999 55543 23332 5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHH---------HHhhchhccc
Q 016804 267 IASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTI---------RRAVDRLCLF 316 (382)
Q Consensus 267 ~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~---------~~~aDrv~~~ 316 (382)
..++.+.++++.+++.| .|+|+++|+.+.. ..+||.|+.|
T Consensus 141 ~~r~~l~~Li~~L~~~g----------~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L 189 (484)
T TIGR02655 141 VVRREIFRLVARLKQIG----------VTTVMTTERIEEYGPIARYGVEEFVSDNVVIL 189 (484)
T ss_pred HHHHHHHHHHHHHHHCC----------CEEEEEecCcccccccccCCceeEeeeeEEEE
Confidence 67888999999998776 6999999987642 4456666444
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >PRK06315 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.7e-09 Score=109.95 Aligned_cols=124 Identities=23% Similarity=0.322 Sum_probs=83.6
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-CccEEEECC---EECCCCCChhhh-ccceEEEE-----e
Q 016804 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-DKGEVYIRG---RKRAGLISDEEI-SGLRIGLV-----F 173 (382)
Q Consensus 104 ~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p-~sG~I~i~G---~~i~~~~~~~~~-~~~~Ig~V-----~ 173 (382)
..+++++ |.+.+||.++|+|+||||||||+++|+|+.++ +.|.|.+.| +++......... ...+.+++ +
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~ 230 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSD 230 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCC
Confidence 5689998 99999999999999999999999999999854 456777644 444322111111 12245666 9
Q ss_pred cCCC--CCCCCCHHHHHHhhHhhcCC--CCHHHHHHHHHHHHHHcCCc-----ccccCCCCCCCh
Q 016804 174 QSAA--LFDSLTVRENVGFLLYENSK--MRDEQISELVKENLAAVGLK-----GVEDRLPSELSG 229 (382)
Q Consensus 174 Q~~~--l~~~lTV~eni~~~~~~~~~--~~~~~~~~~v~~~L~~~gL~-----~~~~~~~~~LSG 229 (382)
|+|. +.+.+ +...++..+..+.. ....+...++.++++.++|. .....+|+.||.
T Consensus 231 q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~~gepp~~~gypP~~fS~ 294 (442)
T PRK06315 231 QSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFST 294 (442)
T ss_pred CCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcCCCCCccccCCCCchhhH
Confidence 9874 44444 55555554433321 12244567788999999993 466788888874
|
|
| >PRK13891 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=7.6e-08 Score=106.95 Aligned_cols=55 Identities=18% Similarity=0.304 Sum_probs=48.4
Q ss_pred HHHHHhcCCCCCCCCCcEEEEeCCCCCC-CHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHH
Q 016804 237 LARSIIFDNTKESVEPEVLLYDEPTAGL-DPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRR 308 (382)
Q Consensus 237 IArAL~~~~~~~a~~P~iLLLDEPtagL-D~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~ 308 (382)
|++++.. +|+++++|||+.+| |+..+..+.+.++.+++.+ .+++++||+++.+..
T Consensus 680 i~~~l~~-------~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g----------~~vil~TQs~~d~~~ 735 (852)
T PRK13891 680 IERALKG-------QPAVIILDEAWLMLGHPAFRAKIREWLKVLRKAN----------CLVLMATQSLSDAAN 735 (852)
T ss_pred HHHHhcC-------CCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHhh
Confidence 5666654 79999999999999 7999999999999998876 489999999999976
|
|
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=98.86 E-value=8.7e-09 Score=97.53 Aligned_cols=137 Identities=23% Similarity=0.300 Sum_probs=81.6
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC-EECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhHhhc
Q 016804 117 GEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG-RKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYEN 195 (382)
Q Consensus 117 Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G-~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~ 195 (382)
|.+..|+||.|+|||||+-.++=- ..+|.=.+++ ... ....++-|+.=+
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~--va~G~~~~g~~~~~--------~~~~~Vlyi~~E-------------------- 50 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALA--MALGKNLFGGGLKV--------TEPGRVVYLSAE-------------------- 50 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHH--HhcCccccCCcccc--------CCCceEEEEECC--------------------
Confidence 678899999999999999888632 1233222211 100 001134444311
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHH----------------HHhcCCCCCCCCCcEEEEeC
Q 016804 196 SKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALAR----------------SIIFDNTKESVEPEVLLYDE 259 (382)
Q Consensus 196 ~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIAr----------------AL~~~~~~~a~~P~iLLLDE 259 (382)
.+.+++.+++..+...+++.+..++... .+|+.|++.+++ +.. .+|+++++|
T Consensus 51 --d~~~~i~~Rl~~i~~~~~~~~~~~rl~~--~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~-------~~~~lvviD- 118 (239)
T cd01125 51 --DPREEIHRRLEAILQHLEPDDAGDRLFI--DSGRIQPISIAREGRIIVVPEFERIIEQLLI-------RRIDLVVID- 118 (239)
T ss_pred --CCHHHHHHHHHHHHhhcCCcCcccceEE--eccCCCceecccCCcccccHHHHHHHHHHHh-------cCCCEEEEC-
Confidence 1122334445555555554443333322 245666655544 222 379999999
Q ss_pred CCCC------CCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHH
Q 016804 260 PTAG------LDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS 304 (382)
Q Consensus 260 Ptag------LD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~ 304 (382)
|+++ +|+.....+++.|.+++++.+ .|+|+++|...
T Consensus 119 pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g---------~avl~v~H~~K 160 (239)
T cd01125 119 PLVSFHGVSENDNGAMDAVIKALRRIAAQTG---------AAILLVHHVRK 160 (239)
T ss_pred ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhC---------CEEEEEeccCc
Confidence 7764 799999999999999987521 69999999864
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.4e-08 Score=91.29 Aligned_cols=57 Identities=21% Similarity=0.283 Sum_probs=40.3
Q ss_pred HHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcc
Q 016804 236 ALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCL 315 (382)
Q Consensus 236 aIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~ 315 (382)
+|+++|.. +|+++++|||. |++.. ..++ +....| ..++.++|..+.+ ...||++.
T Consensus 66 ~i~~aLr~-------~pd~ii~gEir---d~e~~---~~~l-~~a~~G----------~~v~~t~Ha~~~~-~~~~Rl~~ 120 (198)
T cd01131 66 ALKAALRQ-------DPDVILVGEMR---DLETI---RLAL-TAAETG----------HLVMSTLHTNSAA-KTIDRIID 120 (198)
T ss_pred HHHHHhcC-------CcCEEEEcCCC---CHHHH---HHHH-HHHHcC----------CEEEEEecCCcHH-HHHhHHHh
Confidence 37888875 69999999996 55543 3333 344556 3799999998876 56899854
Q ss_pred cc
Q 016804 316 FQ 317 (382)
Q Consensus 316 ~~ 317 (382)
+-
T Consensus 121 l~ 122 (198)
T cd01131 121 VF 122 (198)
T ss_pred hc
Confidence 43
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.2e-09 Score=96.55 Aligned_cols=114 Identities=18% Similarity=0.160 Sum_probs=68.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKM 198 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~ 198 (382)
++||.||||||||||.++|++++ ..|.+.+.+.| .... .++..+........+ ..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D---------------------~~~~-~~~~~~~~~~~~~~~-~~ 55 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQD---------------------SYYK-DLSHEELEERKNNNY-DH 55 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEec---------------------cccc-ccccccHHHhccCCC-CC
Confidence 58999999999999999999998 33444443333 1111 111111111100000 00
Q ss_pred CHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHH
Q 016804 199 RDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPI 267 (382)
Q Consensus 199 ~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~ 267 (382)
......+...+.++.+...+..+.+..++|.|++++..+ .+. .++++|+|+|+.+.++.
T Consensus 56 ~~~~~~~~~~~~l~~l~~~~~~~~p~~d~~~~~~~~~~~---~i~-------~~~~vI~eg~~~~~~~~ 114 (198)
T cd02023 56 PDAFDFDLLISHLQDLKNGKSVEIPVYDFKTHSRLKETV---TVY-------PADVIILEGILALYDKE 114 (198)
T ss_pred CCcccHHHHHHHHHHHHCCCCEeccccccccCcccCCce---ecC-------CCCEEEEechhhccchh
Confidence 000011233455666666666777788999999887655 343 59999999999999873
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >PRK13898 type IV secretion system ATPase VirB4; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=1e-07 Score=105.26 Aligned_cols=49 Identities=18% Similarity=0.339 Sum_probs=43.8
Q ss_pred CCCcEEEEeCCCCCCC-HHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHH
Q 016804 250 VEPEVLLYDEPTAGLD-PIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRR 308 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD-~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~ 308 (382)
.+|.++++|||...|| +.....+.+.++.+++.+ ..++++||+++.+..
T Consensus 641 g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~----------~~~i~~TQ~~~d~~~ 690 (800)
T PRK13898 641 GTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLN----------TFVIFATQSVEDASK 690 (800)
T ss_pred CCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHh
Confidence 4799999999999999 888999999999998776 389999999988664
|
|
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=98.73 E-value=2e-09 Score=100.71 Aligned_cols=41 Identities=27% Similarity=0.340 Sum_probs=31.4
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHH-cCCCCCccEEEECCE
Q 016804 113 KIRHGEAVGIIGPSGTGKSTILKIIA-GLLAPDKGEVYIRGR 153 (382)
Q Consensus 113 ~i~~Ge~vaLiGpNGaGKSTLLklI~-Gl~~p~sG~I~i~G~ 153 (382)
-+++|+++.|.||+|||||||...++ ....+.++-+++...
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e 57 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTE 57 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 48899999999999999999988654 233455566777654
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >TIGR00611 recf recF protein | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.3e-08 Score=101.10 Aligned_cols=70 Identities=23% Similarity=0.291 Sum_probs=56.2
Q ss_pred CCCChHHHHHHHHHHHHhcC--CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccC
Q 016804 225 SELSGGMKKRVALARSIIFD--NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQ 302 (382)
Q Consensus 225 ~~LSGGqrQRVaIArAL~~~--~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHd 302 (382)
..+|.||||+++||.+|+.- ..+...+|+|||||||+++||+..+..+.+.|.+. | .+++++||+
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~----------~qv~it~~~ 340 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---G----------VQVFVTAIS 340 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---C----------CEEEEEecC
Confidence 47999999999999999850 00000149999999999999999999999998764 3 389999999
Q ss_pred HHHHH
Q 016804 303 HSTIR 307 (382)
Q Consensus 303 l~~~~ 307 (382)
++.+.
T Consensus 341 ~~~~~ 345 (365)
T TIGR00611 341 LDHLK 345 (365)
T ss_pred hhhcc
Confidence 87655
|
All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR01026 fliI_yscN ATPase FliI/YscN family | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.8e-07 Score=96.68 Aligned_cols=51 Identities=29% Similarity=0.515 Sum_probs=46.8
Q ss_pred CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEE
Q 016804 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154 (382)
Q Consensus 103 ~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~ 154 (382)
+..+++++ |.+.+|+.++|+|+||+|||||+++|+|+.+|+.|.+...|..
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r 200 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGER 200 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeec
Confidence 46799999 9999999999999999999999999999999999988776654
|
This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. |
| >PRK09825 idnK D-gluconate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=7.8e-09 Score=94.13 Aligned_cols=70 Identities=26% Similarity=0.377 Sum_probs=52.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhH
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLL 192 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~ 192 (382)
+||+++|+|+||||||||+++|+|++.+ +.++|.++.. .....+...|+.+|+...++..++.+|+.+.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~---~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~ 71 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHP---AKNIDKMSQGIPLTDEDRLPWLERLNDASYSL 71 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCC---HhHHHHHhcCCCCCcccchHHHHHHHHHHHHH
Confidence 5999999999999999999999999987 6889987642 11122224677788766666677777776643
|
|
| >PRK05399 DNA mismatch repair protein MutS; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.2e-07 Score=101.10 Aligned_cols=141 Identities=22% Similarity=0.297 Sum_probs=91.3
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC-CCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCC
Q 016804 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL-APDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSL 182 (382)
Q Consensus 104 ~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~-~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~l 182 (382)
..+-+|++|. +.+.++.|.|||++||||+||.++-.. -..-| .|||-... .+
T Consensus 595 ~~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G-----------------------~~VPa~~a---~i 647 (854)
T PRK05399 595 PFVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLAQIG-----------------------SFVPAESA---RI 647 (854)
T ss_pred ceEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcC-----------------------Cceeccce---Ee
Confidence 3567788887 678899999999999999999986432 01111 12332211 11
Q ss_pred CHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCC--
Q 016804 183 TVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEP-- 260 (382)
Q Consensus 183 TV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEP-- 260 (382)
.+.+.| | -++|- .+.....+|--+.....++++|-+ +.++.++|+|||
T Consensus 648 ~~~d~I-~---------------------triga---~d~i~~g~STF~~E~~~~~~il~~-----at~~sLvllDE~Gr 697 (854)
T PRK05399 648 GIVDRI-F---------------------TRIGA---SDDLASGRSTFMVEMTETANILNN-----ATERSLVLLDEIGR 697 (854)
T ss_pred cccCee-e---------------------eccCc---ccccccCcccHHHHHHHHHHHHHh-----CCCCcEEEEecCCC
Confidence 122222 0 01121 122344677778888888888864 457999999999
Q ss_pred -CCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 261 -TAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 261 -tagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
|+.+|..+ ....+++.+.+.++ .++|++||. .++..++++.
T Consensus 698 GTs~~dg~a--ia~aile~l~~~~~---------~~~l~aTH~-~el~~l~~~~ 739 (854)
T PRK05399 698 GTSTYDGLS--IAWAVAEYLHDKIG---------AKTLFATHY-HELTELEEKL 739 (854)
T ss_pred CCCcchhHH--HHHHHHHHHHhcCC---------ceEEEEech-HHHHHHhhhc
Confidence 99999544 46667777776531 489999999 5556677764
|
|
| >TIGR02680 conserved hypothetical protein TIGR02680 | Back alignment and domain information |
|---|
Probab=98.62 E-value=9e-08 Score=110.90 Aligned_cols=106 Identities=19% Similarity=0.228 Sum_probs=72.7
Q ss_pred cccCCCCCCChHHHHHHH----HHHHHhcCC-CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCc
Q 016804 219 VEDRLPSELSGGMKKRVA----LARSIIFDN-TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNI 293 (382)
Q Consensus 219 ~~~~~~~~LSGGqrQRVa----IArAL~~~~-~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~ 293 (382)
..++....||||||||++ +|+++++=. .-...+|+++||||||++||+.++..++++|.++ +
T Consensus 1240 ~~~~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~---------- 1306 (1353)
T TIGR02680 1240 PLTHRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---D---------- 1306 (1353)
T ss_pred chhccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---C----------
Confidence 344456899999999996 576633000 0012479999999999999999999999999888 3
Q ss_pred eEEEEEccCHHHHHHhhchhccccccccchheehhccCCCCcccccccEEEEEeCCe
Q 016804 294 ASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGK 350 (382)
Q Consensus 294 ~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~ 350 (382)
.++||+||++-- ..+ ++..+=|-.+.+|+= .-+|.-+-+.-||+
T Consensus 1307 ~~~i~~s~~~Wg---~Y~---------tVp~laI~el~R~~~-~~~V~v~ry~WnG~ 1350 (1353)
T TIGR02680 1307 LDFVMTSEREWG---CYP---------EVPGLAICQLLRPDG-VDAVTVSRWTWNGR 1350 (1353)
T ss_pred CCEEEEccchhc---ccc---------CCCcceEEEEecCCC-CCEEEEEEEEeCCc
Confidence 379999998622 222 346666667777632 13555555555665
|
Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length. |
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.1e-07 Score=106.25 Aligned_cols=80 Identities=21% Similarity=0.290 Sum_probs=64.0
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCCCCCCCC--CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEE
Q 016804 222 RLPSELSGGMKKRVALARSIIFDNTKESVE--PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVV 299 (382)
Q Consensus 222 ~~~~~LSGGqrQRVaIArAL~~~~~~~a~~--P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIiv 299 (382)
+.+.+|||||+=.++||-+|+-. ...+.+ -++|+|||||..||+.....+.+.|.++...+ .+|+||
T Consensus 811 r~~~~LSGGE~~~~sLalrLALs-~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~----------~qiiII 879 (908)
T COG0419 811 RPIKTLSGGERFLASLALRLALS-DLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDG----------RQIIII 879 (908)
T ss_pred cccccCCchHHHHHHHHHHHHHH-HHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcC----------CeEEEE
Confidence 67899999999988888776420 011124 69999999999999999999999999998876 499999
Q ss_pred ccCHHHHHHhhchh
Q 016804 300 THQHSTIRRAVDRL 313 (382)
Q Consensus 300 THdl~~~~~~aDrv 313 (382)
||+-++.. .+|++
T Consensus 880 SH~eel~e-~~~~~ 892 (908)
T COG0419 880 SHVEELKE-RADVR 892 (908)
T ss_pred eChHHHHH-hCCeE
Confidence 99976654 55655
|
|
| >PRK08149 ATP synthase SpaL; Validated | Back alignment and domain information |
|---|
Probab=98.57 E-value=8.5e-08 Score=98.67 Aligned_cols=75 Identities=19% Similarity=0.370 Sum_probs=60.6
Q ss_pred CCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCc---cEEEECCEECCCCCChhhh--ccceEEEEecCC
Q 016804 102 GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDK---GEVYIRGRKRAGLISDEEI--SGLRIGLVFQSA 176 (382)
Q Consensus 102 g~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~s---G~I~i~G~~i~~~~~~~~~--~~~~Ig~V~Q~~ 176 (382)
.+..+++++ +++.+||+++|+|+||+|||||+++|+++..++. |.|..+|+++......... ...++++|+...
T Consensus 137 tGi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s 215 (428)
T PRK08149 137 TGVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS 215 (428)
T ss_pred CCcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC
Confidence 456799999 9999999999999999999999999999999988 9999999887543222111 123689998865
Q ss_pred C
Q 016804 177 A 177 (382)
Q Consensus 177 ~ 177 (382)
.
T Consensus 216 d 216 (428)
T PRK08149 216 D 216 (428)
T ss_pred C
Confidence 4
|
|
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.7e-07 Score=79.46 Aligned_cols=146 Identities=14% Similarity=0.080 Sum_probs=77.4
Q ss_pred EEEEcCCCccHHHHHHHHH--cCCCCCccEEEECCEECCCCCChhhhccceEEEEecC-CCCCC----------------
Q 016804 120 VGIIGPSGTGKSTILKIIA--GLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQS-AALFD---------------- 180 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~--Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~-~~l~~---------------- 180 (382)
++|+|++|||||||++.|. +..++.+|++...- ..... .. .-.+++-+ |.+-.
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~-~~~~~----~~---~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 73 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQ-LINFF----NV---NDKFRLVDLPGYGYAKVSKEVKEKWGKLIE 73 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcce-eEEEE----Ec---cCeEEEecCCCccccccCHHHHHHHHHHHH
Confidence 6899999999999999999 77777777643211 10000 00 00122222 11100
Q ss_pred -CCCHHHHHHhhHhhc-CCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEE
Q 016804 181 -SLTVRENVGFLLYEN-SKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLY 257 (382)
Q Consensus 181 -~lTV~eni~~~~~~~-~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLL 257 (382)
.++..+|+....... ...........+.++++..+.. -....+...+|++++++........... ....++++
T Consensus 74 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~--~~~~~~~~-- 149 (170)
T cd01876 74 EYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKL--FEIDPPII-- 149 (170)
T ss_pred HHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHh--ccCCCceE--
Confidence 011222222111110 0011112233455667766643 2233446678999988876655422100 00246666
Q ss_pred eCCCCCCCHHHHHHHHHHHHHH
Q 016804 258 DEPTAGLDPIASTVVEDLIRSV 279 (382)
Q Consensus 258 DEPtagLD~~~~~~l~~lL~~l 279 (382)
|++++|.....++.+.|.++
T Consensus 150 --~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 150 --LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred --EEecCCCCCHHHHHHHHHHh
Confidence 99999999999999888764
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.5e-08 Score=92.39 Aligned_cols=29 Identities=38% Similarity=0.540 Sum_probs=27.3
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCC
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAP 143 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p 143 (382)
++|++++|+||||||||||++.|++++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 57999999999999999999999999875
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.4e-07 Score=106.01 Aligned_cols=44 Identities=30% Similarity=0.398 Sum_probs=36.7
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC-CCCccEEEECC
Q 016804 109 GVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL-APDKGEVYIRG 152 (382)
Q Consensus 109 ~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~-~p~sG~I~i~G 152 (382)
-++++.++++++||+|++|+|||||++.+.+.+ ...+|.+++++
T Consensus 199 lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~ 243 (1153)
T PLN03210 199 LLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDR 243 (1153)
T ss_pred HHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeec
Confidence 346778899999999999999999999995554 45589998876
|
syringae 6; Provisional |
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.3e-07 Score=95.24 Aligned_cols=78 Identities=21% Similarity=0.267 Sum_probs=61.0
Q ss_pred eEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHH
Q 016804 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRE 186 (382)
Q Consensus 107 L~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~e 186 (382)
++.+.-.+.+|++++|+|+||+|||||++.|+|...++.|+|.+++..... .....++++++|+..+++ .....
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~-----tt~~~~l~~l~~~~~l~D-tpG~~ 258 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH-----TTTHRELHPLPSGGLLID-TPGMR 258 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc-----hhhhccEEEecCCCeecC-CCchh
Confidence 555566678999999999999999999999999999999999998753211 112336899999988886 35666
Q ss_pred HHHh
Q 016804 187 NVGF 190 (382)
Q Consensus 187 ni~~ 190 (382)
++.+
T Consensus 259 ~~~l 262 (356)
T PRK01889 259 ELQL 262 (356)
T ss_pred hhcc
Confidence 6654
|
|
| >PRK13873 conjugal transfer ATPase TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=1e-06 Score=97.51 Aligned_cols=48 Identities=25% Similarity=0.424 Sum_probs=42.8
Q ss_pred CCCcEEEEeCCCCCCC-HHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHH
Q 016804 250 VEPEVLLYDEPTAGLD-PIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIR 307 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD-~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~ 307 (382)
.+|+++++|||+..|| +..+..+.+.++.+++.+ .+++++||+++.+.
T Consensus 634 ~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~----------~~~i~~TQ~~~d~~ 682 (811)
T PRK13873 634 GRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKN----------VSVIFATQSLADID 682 (811)
T ss_pred CCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcC----------CEEEEEECCHHHHh
Confidence 4799999999999999 788999999999998776 48999999998765
|
|
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.1e-07 Score=82.82 Aligned_cols=67 Identities=16% Similarity=0.165 Sum_probs=48.2
Q ss_pred HHHHHHHHcCCc-ccccCCCCCCChHHHHHHH--HHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 016804 206 LVKENLAAVGLK-GVEDRLPSELSGGMKKRVA--LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK 282 (382)
Q Consensus 206 ~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVa--IArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~ 282 (382)
.+.++++..++. -..-.++..+|+||+|++. +++.+-. .+++++ |+|++|.....++.+.|.++.++
T Consensus 126 ~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~------~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 126 QMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKF------GDDEVI----LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHh------cCCceE----EEEcCCCCCHHHHHHHHHHHhcC
Confidence 345566666664 3445567789999999987 6666632 124443 99999999999999999887654
|
|
| >PRK09862 putative ATP-dependent protease; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=9.8e-08 Score=100.16 Aligned_cols=63 Identities=25% Similarity=0.393 Sum_probs=59.1
Q ss_pred EEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECC
Q 016804 94 CRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRA 156 (382)
Q Consensus 94 ~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~ 156 (382)
+.|+++.||...+++++++.+..|+.++|+||||||||||++.|.|+++|.+|++.+++..+.
T Consensus 187 ~~d~~~v~Gq~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~ 249 (506)
T PRK09862 187 QHDLSDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAIL 249 (506)
T ss_pred ccCeEEEECcHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhh
Confidence 458999999889999999999999999999999999999999999999999999999987654
|
|
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=2e-07 Score=84.93 Aligned_cols=55 Identities=25% Similarity=0.332 Sum_probs=41.2
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCC
Q 016804 117 GEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSA 176 (382)
Q Consensus 117 Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~ 176 (382)
|++++|+||||||||||+++|++...+ .+.+.+..+...... . ....+++++|+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~ 56 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASA-G-SENHIALSEQEF 56 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccch-h-HHhheeEcHHHH
Confidence 789999999999999999999999876 588888765532111 1 112478888864
|
|
| >PRK00300 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.3e-07 Score=86.88 Aligned_cols=40 Identities=38% Similarity=0.579 Sum_probs=34.6
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCC------------CCccEEEECCEECC
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAGLLA------------PDKGEVYIRGRKRA 156 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~Gl~~------------p~sG~I~i~G~~i~ 156 (382)
++|++++|+||||||||||+++|++.++ |..|+ ++|.+..
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge--~~g~~~~ 54 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE--VDGVDYF 54 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC--cCCCeeE
Confidence 5899999999999999999999999985 77788 4776643
|
|
| >TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.3e-07 Score=81.69 Aligned_cols=67 Identities=33% Similarity=0.493 Sum_probs=45.7
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEE-----------CCEECCCCCChhhh----ccceEEEEecCCCCCCC
Q 016804 117 GEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI-----------RGRKRAGLISDEEI----SGLRIGLVFQSAALFDS 181 (382)
Q Consensus 117 Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i-----------~G~~i~~~~~~~~~----~~~~Ig~V~Q~~~l~~~ 181 (382)
|++++|+||||||||||++.|++.+.+. |.+.+ +|.+.... ..... ....++.++|...++..
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g 78 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHFVRRVITRPASAGGENHIAL-STEEFDHREDGGAFALSWQAHGLSYG 78 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEEeeEEcccCCCCCCcccccc-CHHHHHHHHHCCCEEEEEeecCcccc
Confidence 6789999999999999999999987654 65554 44443222 11111 12248888998777766
Q ss_pred CCHH
Q 016804 182 LTVR 185 (382)
Q Consensus 182 lTV~ 185 (382)
.++.
T Consensus 79 ~~~~ 82 (179)
T TIGR02322 79 IPAE 82 (179)
T ss_pred ChHH
Confidence 6653
|
Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP. |
| >PRK07594 type III secretion system ATPase SsaN; Validated | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.5e-07 Score=96.98 Aligned_cols=63 Identities=21% Similarity=0.362 Sum_probs=57.3
Q ss_pred eEEEEeEEEEe-CCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEE
Q 016804 91 LIDCRNVYKSF-GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154 (382)
Q Consensus 91 ~I~~~nvs~~y-g~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~ 154 (382)
.++.++++..| .+..+++++ |++.+||.++|+|+||+|||||+++|+|+..++.|.+.+.|+.
T Consensus 129 ~~~r~~v~~~l~tGi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeR 192 (433)
T PRK07594 129 AMVRQPITQPLMTGIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER 192 (433)
T ss_pred ceeccCHhheeCCCceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCC
Confidence 47788899888 467899999 9999999999999999999999999999999999988887764
|
|
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.8e-07 Score=96.72 Aligned_cols=110 Identities=23% Similarity=0.315 Sum_probs=74.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCCCccE--------EEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHH
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE--------VYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVREN 187 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~--------I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~en 187 (382)
..+.+.|+||||||||||+++|.++.++..|. |.++|..+. + + .....|
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~-~---------------------d-~~~i~~ 230 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLR-W---------------------D-PREVTN 230 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhcc-C---------------------C-HHHHhH
Confidence 35679999999999999999999998765443 555553321 0 0 000011
Q ss_pred HHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHH
Q 016804 188 VGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPI 267 (382)
Q Consensus 188 i~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~ 267 (382)
..++. . .+...+.+.+.++.+|+.+....++.++||| +|+||| +..||+.
T Consensus 231 ~llg~-----~-~~~~~~~a~~~l~~~gl~~~~~g~v~~asgG-----------------------vL~LDE-i~~Ld~~ 280 (615)
T TIGR02903 231 PLLGS-----V-HDPIYQGARRDLAETGVPEPKTGLVTDAHGG-----------------------VLFIDE-IGELDPL 280 (615)
T ss_pred HhcCC-----c-cHHHHHHHHHHHHHcCCCchhcCchhhcCCC-----------------------eEEEec-cccCCHH
Confidence 11211 1 1112233455688889988888888888888 589999 8999999
Q ss_pred HHHHHHHHHHH
Q 016804 268 ASTVVEDLIRS 278 (382)
Q Consensus 268 ~~~~l~~lL~~ 278 (382)
.+..+.+.|++
T Consensus 281 ~Q~~Ll~~Le~ 291 (615)
T TIGR02903 281 LQNKLLKVLED 291 (615)
T ss_pred HHHHHHHHHhh
Confidence 99998888865
|
Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. |
| >PRK14079 recF recombination protein F; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.2e-07 Score=93.43 Aligned_cols=55 Identities=33% Similarity=0.244 Sum_probs=43.2
Q ss_pred CCCChHHHHHHHHHHHHhcC--CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 016804 225 SELSGGMKKRVALARSIIFD--NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSV 279 (382)
Q Consensus 225 ~~LSGGqrQRVaIArAL~~~--~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l 279 (382)
..+|+|||+++++|+.|+.- ..+...+|+++|||||+++||+..+..+.+.|...
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~ 318 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL 318 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC
Confidence 47899999999999999700 00000269999999999999999999998888643
|
|
| >TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.4e-07 Score=95.40 Aligned_cols=86 Identities=21% Similarity=0.320 Sum_probs=63.4
Q ss_pred CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCCh--hhh--ccceEEEEecCCCC
Q 016804 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD--EEI--SGLRIGLVFQSAAL 178 (382)
Q Consensus 103 ~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~--~~~--~~~~Ig~V~Q~~~l 178 (382)
+..+++++ |.+.+|+.++|+|+||+|||||+++|+|+..|+.|.+...|++-...... ... .....+++++++..
T Consensus 132 G~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~ 210 (422)
T TIGR02546 132 GVRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSD 210 (422)
T ss_pred Cceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEccCCcCHHHHHHHHhccccccceEEEecccc
Confidence 46799999 99999999999999999999999999999999999998866542221100 000 01236788998877
Q ss_pred CCCCCHHHHHHh
Q 016804 179 FDSLTVRENVGF 190 (382)
Q Consensus 179 ~~~lTV~eni~~ 190 (382)
+|.++.. +..+
T Consensus 211 ~p~~~r~-~~~~ 221 (422)
T TIGR02546 211 RPSLERL-KAAY 221 (422)
T ss_pred CCHHHHH-HHHH
Confidence 7755443 4433
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.6e-07 Score=93.37 Aligned_cols=76 Identities=11% Similarity=0.090 Sum_probs=57.0
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCC----hhhhccceEEEEecCCCCCCCCCHHHHHHh
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS----DEEISGLRIGLVFQSAALFDSLTVRENVGF 190 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~----~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~ 190 (382)
++|++++++||||+||||++..|++.+.+..|+|.+.+.|...... ..+..+..+.+++|.....+..++++++..
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~ 191 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA 191 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence 5799999999999999999999999999988999998877532110 112223358999997666665566677654
|
|
| >cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein | Back alignment and domain information |
|---|
Probab=98.39 E-value=4.1e-07 Score=90.71 Aligned_cols=57 Identities=26% Similarity=0.460 Sum_probs=49.7
Q ss_pred EEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEE
Q 016804 97 VYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154 (382)
Q Consensus 97 vs~~yg-~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~ 154 (382)
++..|. +..+++++ |.+.+||+++|+|+||+|||||+++|+|+..|+.|.+.+.|++
T Consensus 49 ~~~~l~tGi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer 106 (326)
T cd01136 49 IDEVLPTGVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGER 106 (326)
T ss_pred ceeEcCCCcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecC
Confidence 444453 46799999 9999999999999999999999999999999999988886653
|
This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway. |
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=98.38 E-value=4.2e-06 Score=83.89 Aligned_cols=39 Identities=26% Similarity=0.402 Sum_probs=31.1
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCCC-CCccEEEECC
Q 016804 114 IRHGEAVGIIGPSGTGKSTILKIIAGLLA-PDKGEVYIRG 152 (382)
Q Consensus 114 i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~-p~sG~I~i~G 152 (382)
..++..+.|.||+||||||+++.|.+.+. +..|.|....
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiE 158 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIE 158 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEc
Confidence 35688999999999999999999998765 3456665543
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >PRK07960 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.1e-07 Score=94.90 Aligned_cols=73 Identities=25% Similarity=0.424 Sum_probs=57.3
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCc---cEEEECCEECCCCCChh-hhccceEEEEecCCC
Q 016804 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDK---GEVYIRGRKRAGLISDE-EISGLRIGLVFQSAA 177 (382)
Q Consensus 104 ~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~s---G~I~i~G~~i~~~~~~~-~~~~~~Ig~V~Q~~~ 177 (382)
..+++.+ |++.+|++++|+|+||+|||||+++|+|+.+|+. |.|-++|+++....... ....+..++|+|+..
T Consensus 163 iraID~l-l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~~a 239 (455)
T PRK07960 163 VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPA 239 (455)
T ss_pred ceeeeec-ccccCCcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEECC
Confidence 4466666 9999999999999999999999999999999996 99999999874321111 111235889999865
|
|
| >TIGR00554 panK_bact pantothenate kinase, bacterial type | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.8e-07 Score=88.88 Aligned_cols=71 Identities=23% Similarity=0.321 Sum_probs=51.9
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCC--CCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhH
Q 016804 118 EAVGIIGPSGTGKSTILKIIAGLLA--PDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLL 192 (382)
Q Consensus 118 e~vaLiGpNGaGKSTLLklI~Gl~~--p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~ 192 (382)
.++||.||||||||||+++|.+++. |++|.|.+-+.|-... ...... +.+++ |.....+.+++.+.+.+..
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~-~~~~l~--~~g~~-~~~g~P~s~D~~~l~~~L~ 135 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLH-PNQVLK--ERNLM-KKKGFPESYDMHRLVKFLS 135 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccc-cHHHHH--HcCCc-cccCCChhccHHHHHHHHH
Confidence 5899999999999999999999998 7889988866653221 222222 35654 7666677788888877643
|
Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model. |
| >TIGR00767 rho transcription termination factor Rho | Back alignment and domain information |
|---|
Probab=98.32 E-value=8.3e-07 Score=90.58 Aligned_cols=53 Identities=21% Similarity=0.277 Sum_probs=48.2
Q ss_pred eEEEEeEEEEeCC-eeeeE-----------eeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC
Q 016804 91 LIDCRNVYKSFGE-KHILR-----------GVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP 143 (382)
Q Consensus 91 ~I~~~nvs~~yg~-~~iL~-----------~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p 143 (382)
-++++||++.|++ +.+|+ |+++.|.+|+.++|+||+|||||||++.|+..+..
T Consensus 130 ri~Fe~LTf~YP~er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~ 194 (415)
T TIGR00767 130 RVLFENLTPLYPNERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITR 194 (415)
T ss_pred CeEEEEeeecCCCccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhcc
Confidence 4899999999965 56897 99999999999999999999999999999998753
|
Members of this family differ in the specificity of RNA binding. |
| >PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.31 E-value=8.6e-07 Score=83.55 Aligned_cols=69 Identities=28% Similarity=0.404 Sum_probs=48.0
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCCccE----EEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHh
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE----VYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGF 190 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~----I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~ 190 (382)
.+..++||.||||||||||++.|++++++++|. |.+|+... ...... ..|++++... ++.+++.+++.+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~----~~~~~~--~~g~~~~~~~-~~~~d~~~~~~~ 103 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHL----DNAVLD--AHGLRPRKGA-PETFDVAGLAAL 103 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccC----CHHHHH--hcccccccCC-CCCCCHHHHHHH
Confidence 456799999999999999999999999999998 44454321 222211 3577766433 345677666655
|
|
| >PRK09099 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=8.4e-07 Score=91.73 Aligned_cols=51 Identities=27% Similarity=0.524 Sum_probs=47.8
Q ss_pred CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEE
Q 016804 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154 (382)
Q Consensus 103 ~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~ 154 (382)
+..+++++ |.+.+|++++|+|+||+|||||+++|+|+..++.|.|.+.|+.
T Consensus 150 Gi~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~iGer 200 (441)
T PRK09099 150 GVRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIGER 200 (441)
T ss_pred Cceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccC
Confidence 46799999 9999999999999999999999999999999999999998864
|
|
| >TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB | Back alignment and domain information |
|---|
Probab=98.28 E-value=8.2e-07 Score=89.68 Aligned_cols=119 Identities=23% Similarity=0.201 Sum_probs=64.1
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCC--Ccc-EEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhh
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAP--DKG-EVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFL 191 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p--~sG-~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~ 191 (382)
++|..+.|+||+||||||+|+.|++.+.+ .++ .|.....++ .+... .. ....+++.|...--...+-.+-+...
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edpi-E~~~~-~~-~~~~~~v~Q~~v~~~~~~~~~~l~~a 208 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPI-EFVYD-EI-ETISASVCQSEIPRHLNNFAAGVRNA 208 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCc-eEecc-cc-ccccceeeeeeccccccCHHHHHHHH
Confidence 48899999999999999999999999843 344 554443332 22111 11 11257788864211112333333322
Q ss_pred HhhcCC---CCHHHHHHHHHHHHHH-------------cCCcccccCCCCCCChHHHHHHH
Q 016804 192 LYENSK---MRDEQISELVKENLAA-------------VGLKGVEDRLPSELSGGMKKRVA 236 (382)
Q Consensus 192 ~~~~~~---~~~~~~~~~v~~~L~~-------------~gL~~~~~~~~~~LSGGqrQRVa 236 (382)
++.... ..+-...+.+..+++. -+..+...|....+|+|||--+.
T Consensus 209 LR~~Pd~i~vGEiRd~et~~~al~aa~tGh~v~tTlHa~~~~~~i~Rl~~~~~~~~~~~~~ 269 (358)
T TIGR02524 209 LRRKPHAILVGEARDAETISAALEAALTGHPVYTTLHSSGVAETIRRLVGSFPAEERIGRT 269 (358)
T ss_pred hccCCCEEeeeeeCCHHHHHHHHHHHHcCCcEEEeeccCCHHHHHHHHHHhCCccchhhHH
Confidence 221111 0111112334445555 33345566777889999875443
|
Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems. |
| >TIGR03497 FliI_clade2 flagellar protein export ATPase FliI | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.6e-06 Score=89.20 Aligned_cols=57 Identities=30% Similarity=0.462 Sum_probs=50.5
Q ss_pred EEEe-CCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEEC
Q 016804 98 YKSF-GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKR 155 (382)
Q Consensus 98 s~~y-g~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i 155 (382)
+..| .+..+++++ |.+.+|++++|+|+||+|||||+++|+++.+++.|.|.+.|+..
T Consensus 118 ~~~~~tGi~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~gvi~~~Ger~ 175 (413)
T TIGR03497 118 RDPLETGIKAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADINVIALIGERG 175 (413)
T ss_pred hhhccccceeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccch
Confidence 3444 346799999 99999999999999999999999999999999999999888753
|
Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. |
| >TIGR03498 FliI_clade3 flagellar protein export ATPase FliI | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.3e-06 Score=89.76 Aligned_cols=63 Identities=22% Similarity=0.361 Sum_probs=51.9
Q ss_pred EEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEEC
Q 016804 92 IDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKR 155 (382)
Q Consensus 92 I~~~nvs~~yg-~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i 155 (382)
++-..++..+. +..+++ .+|.+.+|+.++|+|+||+|||||+++|+++.+|+.|.|.+.|+..
T Consensus 115 ~~R~~i~~~l~tGi~aiD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi~~iGer~ 178 (418)
T TIGR03498 115 MSRARVGEPLDTGVRVID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDADVVVIALVGERG 178 (418)
T ss_pred hhccCcccccCCccEEEe-eeccccCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEeeec
Confidence 33444555553 455675 6999999999999999999999999999999999999999888753
|
Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. |
| >TIGR03496 FliI_clade1 flagellar protein export ATPase FliI | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.7e-06 Score=88.79 Aligned_cols=62 Identities=24% Similarity=0.424 Sum_probs=53.4
Q ss_pred EEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEE
Q 016804 92 IDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154 (382)
Q Consensus 92 I~~~nvs~~yg-~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~ 154 (382)
++-+.++..|. +..+++.+ |.+.+|++++|+|+||+|||||+++|+++..|+.+.+...|++
T Consensus 112 ~~R~~~~~~~~tGi~~id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~~~~~vi~~iGer 174 (411)
T TIGR03496 112 LKRAPIDEPLDVGVRAINGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTEADVVVVGLIGER 174 (411)
T ss_pred HhccCcceEeeeeEEeecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEEecC
Confidence 45566677774 46789999 9999999999999999999999999999999998887777764
|
Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. |
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=98.21 E-value=8.1e-07 Score=67.88 Aligned_cols=39 Identities=33% Similarity=0.587 Sum_probs=31.4
Q ss_pred eEeeeEEEeC-CcEEEEEcCCCccHHHHHHHHHcCCCCCc
Q 016804 107 LRGVSFKIRH-GEAVGIIGPSGTGKSTILKIIAGLLAPDK 145 (382)
Q Consensus 107 L~~vsl~i~~-Ge~vaLiGpNGaGKSTLLklI~Gl~~p~s 145 (382)
+++.++++.+ |.++.|.||||||||||+.+|.=++-+..
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~~ 51 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGNT 51 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 3445667775 67999999999999999999987776654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 382 | ||||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 9e-34 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 4e-28 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 6e-28 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 8e-27 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 1e-26 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 2e-26 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 6e-26 | ||
| 1g29_1 | 372 | Malk Length = 372 | 1e-24 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-24 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 1e-23 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-23 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 2e-23 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 2e-23 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 2e-23 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 3e-23 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 8e-23 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 8e-23 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 6e-22 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 1e-21 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 1e-21 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 4e-21 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 2e-20 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 2e-19 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 3e-19 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 3e-19 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 2e-18 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 2e-18 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 2e-17 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 3e-17 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 4e-17 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 6e-17 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 2e-16 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 7e-16 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-15 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-15 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 3e-15 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 3e-15 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 3e-15 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 5e-15 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 7e-15 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 7e-15 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 2e-14 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 2e-14 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 2e-14 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 5e-14 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 5e-14 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 4e-13 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 4e-13 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 5e-13 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 1e-12 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 2e-12 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 3e-12 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-11 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 3e-11 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 3e-11 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 3e-11 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 3e-11 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 4e-11 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 4e-11 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 5e-11 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 1e-10 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 3e-10 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 4e-10 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-09 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 3e-09 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 3e-09 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 4e-09 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 8e-09 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 8e-09 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 2e-08 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-08 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 3e-08 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 4e-08 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 4e-08 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 9e-08 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 1e-07 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 1e-07 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 2e-07 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 2e-07 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 3e-07 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 6e-07 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 1e-06 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 1e-06 | ||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 4e-06 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 1e-05 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 1e-05 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 2e-05 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 2e-05 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 2e-05 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 2e-05 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 9e-05 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 2e-04 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 2e-04 | ||
| 2pjz_A | 263 | The Crystal Structure Of Putative Cobalt Transport | 3e-04 |
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
| >pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 173 bits (442), Expect = 3e-52
Identities = 54/194 (27%), Positives = 100/194 (51%), Gaps = 15/194 (7%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
+ +++ K G+K IL+G+SF+I GE G+IGP+G GK+T L+II+ L+ P G V +
Sbjct: 16 VVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVF 75
Query: 152 GRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFL--LYENSKMRDEQISELVKE 209
G+ ++ + I + + A + ++ E + F+ Y +I E+V+
Sbjct: 76 GKN---VVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVER 129
Query: 210 NLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAS 269
GL S S GM +++ +AR+++ V P + + DEPT+GLD + +
Sbjct: 130 ATEIAGLGEKIKDRVSTYSKGMVRKLLIARALM-------VNPRLAILDEPTSGLDVLNA 182
Query: 270 TVVEDLIRSVHKKG 283
V +++ ++G
Sbjct: 183 REVRKILKQASQEG 196
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 175 bits (447), Expect = 7e-52
Identities = 61/180 (33%), Positives = 94/180 (52%), Gaps = 18/180 (10%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
+ ++ KSF +L +S + GE + IIG SG GK+T+L+ +AG PD GE+ +
Sbjct: 4 ALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISL 63
Query: 151 RGRKRAGLISDEEISGL-----RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISE 205
G+ I + + L R+G + Q LF LTV N+ + L N K R Q +
Sbjct: 64 SGK----TIFSKN-TNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGL-GNGKGRTAQERQ 117
Query: 206 LVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
++ L G+ + R P ELSGG ++R ALAR++ +PE++L DEP + LD
Sbjct: 118 RIEAMLELTGISELAGRYPHELSGGQQQRAALARALA-------PDPELILLDEPFSALD 170
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 175 bits (445), Expect = 1e-51
Identities = 76/184 (41%), Positives = 112/184 (60%), Gaps = 23/184 (12%)
Query: 88 GDVLIDCRNVYKSF-GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG 146
G + I+ V K + G +RGVSF+IR GE VG++GPSG+GK+TIL++IAGL P KG
Sbjct: 11 GSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKG 70
Query: 147 EVYIRGRKRAGLISDEEISGL-----RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDE 201
+V+I G+ ++ L +GLVFQ+ ALF +TV +NV F L ++ +
Sbjct: 71 DVWIGGK---------RVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGL-REKRVPKD 120
Query: 202 QISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPT 261
++ V+E L + L+ +R P ELSGG ++RVALAR++ P+VLL+DEP
Sbjct: 121 EMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALA-------PRPQVLLFDEPF 173
Query: 262 AGLD 265
A +D
Sbjct: 174 AAID 177
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 170 bits (433), Expect = 2e-51
Identities = 73/215 (33%), Positives = 113/215 (52%), Gaps = 24/215 (11%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
++ N+ K IL+G+S ++ GE V IIG SG+GKST+L I+ L AP +G+V++
Sbjct: 4 ILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFL 63
Query: 151 RGRKRAGLISDEEISGLR---IGLVFQSAALFDSLTVRENVGF-LLYENSKMRDEQISEL 206
G++ +++E+S LR +G VFQ L LT ENV +L ++ E
Sbjct: 64 EGKEVDYT-NEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLK--MGKPKKEAKER 120
Query: 207 VKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDP 266
+ L+ +GL R P ELSGG ++RVA+AR++ + P +L DEPT LD
Sbjct: 121 GEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANE-------PILLFADEPTGNLDS 173
Query: 267 IASTVVEDLIRSVHKKGENGLANPGNIASYVVVTH 301
+ V D+ +++ G S V+VTH
Sbjct: 174 ANTKRVMDIFLKINEGG----------TSIVMVTH 198
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 168 bits (427), Expect = 6e-50
Identities = 69/233 (29%), Positives = 117/233 (50%), Gaps = 25/233 (10%)
Query: 89 DVLIDCRNV-YKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE 147
D ++ + Y H L+G++ I+ GE I+G +G GKST+ + G+L P G
Sbjct: 5 DYILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGR 64
Query: 148 VYIRGRKRAGLISDEEISGLR--IGLVFQSAA--LFDSLTVRENVGFLLYENSKMRDEQI 203
+ + S + I LR IG+VFQ LF + +V ++V F N K+ +++I
Sbjct: 65 ILFDNKPIDY--SRKGIMKLRESIGIVFQDPDNQLFSA-SVYQDVSFGA-VNMKLPEDEI 120
Query: 204 SELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAG 263
+ V L G++ ++D+ LS G KKRVA+A ++ +EP+VL+ DEPTAG
Sbjct: 121 RKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIA-GVL------VMEPKVLILDEPTAG 173
Query: 264 LDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLF 316
LDP+ + + L+ + K E G+ + ++ TH + D + +
Sbjct: 174 LDPMGVSEIMKLLVEMQK--ELGI-------TIIIATHDIDIVPLYCDNVFVM 217
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 168 bits (429), Expect = 2e-49
Identities = 52/180 (28%), Positives = 96/180 (53%), Gaps = 26/180 (14%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
+I+ ++ + + L +S K+ GE I+GP+G GK+ L++IAG PD G + +
Sbjct: 1 MIEIESLSRKWKN-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILL 59
Query: 151 RGRKRAGLISDEEISGLR-----IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISE 205
G+ +++ L I V+Q+ +LF + V++N+ F + +M+ + +
Sbjct: 60 DGK---------DVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGM----RMKKIKDPK 106
Query: 206 LVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
V + + ++ + DR P LSGG ++RVALAR+++ P++LL DEP + LD
Sbjct: 107 RVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVT-------NPKILLLDEPLSALD 159
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 165 bits (419), Expect = 1e-48
Identities = 58/242 (23%), Positives = 97/242 (40%), Gaps = 30/242 (12%)
Query: 84 PEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP 143
+LI + + K IL+ +S++I G+ + G +G GK+T+L I+
Sbjct: 14 VPRGSHMLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPA 73
Query: 144 DKGEVYIRGRKRAGLISDEEISGLR--IGLVFQS--AALFDSLTVRENV--GFL----LY 193
G V + G+ +R IG V S + V + V G +Y
Sbjct: 74 TSGTVNLFGKMPGK--VGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVY 131
Query: 194 ENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPE 253
++ + L VG+ + LS G K+RV +AR+++ P+
Sbjct: 132 QDIDDEIR---NEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQ-------PQ 181
Query: 254 VLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313
VL+ DEP AGLD IA E L+ + L++ + + VTH I ++
Sbjct: 182 VLILDEPAAGLDFIA---RESLLSILDS-----LSDSYPTLAMIYVTHFIEEITANFSKI 233
Query: 314 CL 315
L
Sbjct: 234 LL 235
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 161 bits (409), Expect = 6e-48
Identities = 47/194 (24%), Positives = 91/194 (46%), Gaps = 23/194 (11%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
++ R++ + K +L ++ I G V GP+G GK+T+LK I+ L P KGE+
Sbjct: 11 LEIRDLSVGYD-KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYN 69
Query: 152 GRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFL--LYENSKMRDEQISELVKE 209
G + ++ G +I + + + ++V + + + LY K+ +I +
Sbjct: 70 G------VPITKVKG-KIFFLPEEIIVPRKISVEDYLKAVASLY-GVKVNKNEIMDA--- 118
Query: 210 NLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAS 269
L +V + ++ +L ELS G +RV LA +++ V E+ + D+P +D +
Sbjct: 119 -LESVEVLDLKKKL-GELSQGTIRRVQLASTLL-------VNAEIYVLDDPVVAIDEDSK 169
Query: 270 TVVEDLIRSVHKKG 283
V I + K+
Sbjct: 170 HKVLKSILEILKEK 183
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 162 bits (412), Expect = 8e-48
Identities = 52/240 (21%), Positives = 100/240 (41%), Gaps = 44/240 (18%)
Query: 91 LIDCRNVYKSFG----EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG 146
+I +NV + E+ L ++ ++ +GE V I+GP+G+GK+T+L+ I+GLL P G
Sbjct: 1 MIQLKNVGITLSGKGYERFSLENINLEV-NGEKVIILGPNGSGKTTLLRAISGLL-PYSG 58
Query: 147 EVYIRGRKRAGLISDEEISGLR--IGLVFQSAALFD-SLTVRENVGFLLYENSKMRDEQI 203
++I G E+ +R I ++ +TV + V E + +
Sbjct: 59 NIFING---------MEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYE-ELKGLDRDLF 108
Query: 204 SELVKENLAAVGL-KGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA 262
E++K + L + + R +LS G V + ++ +PE++ DEP
Sbjct: 109 LEMLKA----LKLGEEILRRKLYKLSAGQSVLVRTSLALA-------SQPEIVGLDEPFE 157
Query: 263 GLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHI 322
+D V+ I+ K ++VTH+ + + F + +
Sbjct: 158 NVDAARRHVISRYIKEYGK-------------EGILVTHELDMLNLYKEYKAYFLVGNRL 204
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 160 bits (408), Expect = 3e-47
Identities = 73/259 (28%), Positives = 115/259 (44%), Gaps = 50/259 (19%)
Query: 92 IDCRNVY-----KSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG 146
I+ NV + EK L VS I GE + + G +G+GKST+L+I+AGL+ P G
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 147 EVYIRGRKRAGLISDEEISGLR--IGLVFQSAA--LFDSLTVRENVGFLLYENSKMRDEQ 202
+V G ++ +R IG+ FQ F V + V F + +N +
Sbjct: 63 DVLYDGE-------RKKGYEIRRNIGIAFQYPEDQFFAE-RVFDEVAFAV-KNFYPDRDP 113
Query: 203 ISELVKENLAAVGL--KGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEP 260
+ LVK+ + VGL +DR+P LSGG K+RVA+A S+I EP++L+ DEP
Sbjct: 114 V-PLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIA-SVI------VHEPDILILDEP 165
Query: 261 TAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLF---- 316
GLD T + ++ G + ++++H T+ VDR+ +
Sbjct: 166 LVGLDREGKTDLLRIVEKWKTLG----------KTVILISHDIETVINHVDRVVVLEKGK 215
Query: 317 --------QIFGHIDVVII 327
+ D
Sbjct: 216 KVFDGTRMEFLEKYDPRFF 234
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 163 bits (414), Expect = 4e-47
Identities = 86/317 (27%), Positives = 144/317 (45%), Gaps = 55/317 (17%)
Query: 71 DSSKSENVNTLFEPEDDGDVLIDCRNVYKSFGEK----HILRGVSFKIRHGEAVGIIGPS 126
+ ++ +DD +I N+ K F + L VS + G+ G+IG S
Sbjct: 4 HHHHHHHHHSSGHIDDDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGAS 63
Query: 127 GTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTV 184
G GKST+++ + L P +G V + G++ L S+ E++ R IG++FQ L S TV
Sbjct: 64 GAGKSTLIRCVNLLERPTEGSVLVDGQELTTL-SESELTKARRQIGMIFQHFNLLSSRTV 122
Query: 185 RENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFD 244
NV L E +++ V E L+ VGL D PS LSGG K+RVA+AR++ +
Sbjct: 123 FGNVALPL-ELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASN 181
Query: 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS 304
P+VLL D+ T+ LDP + + +L++ +++ GL + +++TH+
Sbjct: 182 -------PKVLLCDQATSALDPATTRSILELLKDINR--RLGL-------TILLITHEMD 225
Query: 305 TIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHE-FTSS 363
++R D VA + G+++ Q E F+
Sbjct: 226 VVKRICDC------------------VA------------VISNGELIEQDTVSEVFSHP 255
Query: 364 SNPIVQQFASGSLEGPI 380
P+ Q+F +L I
Sbjct: 256 KTPLAQKFIQSTLHLDI 272
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 159 bits (405), Expect = 9e-47
Identities = 85/302 (28%), Positives = 140/302 (46%), Gaps = 60/302 (19%)
Query: 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV 148
+ + +++K +G +L+GVS + R G+ + IIG SG+GKST L+ I L P +G +
Sbjct: 4 ENKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 63
Query: 149 YIRG---------RKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSK 197
+ G + + ++ LR + +VFQ L+ +TV ENV +
Sbjct: 64 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG 123
Query: 198 MRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLL 256
+ E + LA VG+ + + P LSGG ++RV++AR++ ++EP+VLL
Sbjct: 124 LSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARAL-------AMEPDVLL 176
Query: 257 YDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLF 316
+DEPT+ LDP V +++ LA G + VVVTH+ R
Sbjct: 177 FDEPTSALDPELVGEVLRIMQQ--------LAEEG--KTMVVVTHEMGFARHVSS----- 221
Query: 317 QIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHE-FTSSSNPIVQQFASGS 375
+IFL++GKI +G + F + +P +QQF GS
Sbjct: 222 -------------------------HVIFLHQGKIEEEGDPEQVFGNPQSPRLQQFLKGS 256
Query: 376 LE 377
L+
Sbjct: 257 LK 258
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 157 bits (400), Expect = 2e-46
Identities = 76/229 (33%), Positives = 119/229 (51%), Gaps = 27/229 (11%)
Query: 91 LIDCRNVYKSFG----EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG 146
++ +NV K++ + L+ V+ I+ GE V I+GPSG+GKST+L II L P +G
Sbjct: 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG 60
Query: 147 EVYIRGRKRAGLISDEEISGLR---IGLVFQSAALFDSLTVRENVGF-LLY-ENSKMRDE 201
EVYI K L D+E++ +R IG VFQ L LT ENV L++ M E
Sbjct: 61 EVYIDNIKTNDL-DDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGE 119
Query: 202 QISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEP 260
+ + E L L+ + P++LSGG ++RVA+AR++ + P ++L D+P
Sbjct: 120 ERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANN-------PPIILADQP 172
Query: 261 TAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA 309
T LD + L++ +++ E+G + VVVTH + R
Sbjct: 173 TWALDSKTGEKIMQLLKKLNE--EDG-------KTVVVVTHDINVARFG 212
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 156 bits (398), Expect = 8e-46
Identities = 88/286 (30%), Positives = 133/286 (46%), Gaps = 52/286 (18%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
+ID + KSFG +L+G++ IR GE V +IGPSG+GKST L+ + L D+GE+ I
Sbjct: 24 MIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIII 83
Query: 151 RGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVK 208
G D ++ +R +G+VFQ LF +TV N+ + K E+
Sbjct: 84 DGINLKA--KDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAM 141
Query: 209 ENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIA 268
E L VGLK P LSGG +RVA+AR++ ++EP+++L+DEPT+ LDP
Sbjct: 142 ELLDKVGLKDKAHAYPDSLSGGQAQRVAIARAL-------AMEPKIMLFDEPTSALDPEM 194
Query: 269 STVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIIL 328
V +++ LAN G + VVVTH+ R D
Sbjct: 195 VGEVLSVMKQ--------LANEG--MTMVVVTHEMGFAREVGD----------------- 227
Query: 329 GAVAPDKEVFFIYRLIFLYEGKIVWQGMTHE-FTSSSNPIVQQFAS 373
R++F+ G I+ +G + F + + F S
Sbjct: 228 -------------RVLFMDGGYIIEEGKPEDLFDRPQHERTKAFLS 260
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 153 bits (388), Expect = 1e-44
Identities = 56/175 (32%), Positives = 91/175 (52%), Gaps = 27/175 (15%)
Query: 96 NVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKR 155
K G + V F++ + ++GP+G GKS L++IAG++ PD+GEV + G
Sbjct: 6 RAEKRLGNFRL--NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGA-- 60
Query: 156 AGLISDEEISGLR-----IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKEN 210
+I+ L IG V Q ALF L+V N+ + L + + V+E
Sbjct: 61 -------DITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGL---RNVERVERDRRVREM 110
Query: 211 LAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
+G+ + DR P+ LSGG ++RVALAR+++ ++P +LL DEP + +D
Sbjct: 111 AEKLGIAHLLDRKPARLSGGERQRVALARALV-------IQPRLLLLDEPLSAVD 158
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 153 bits (390), Expect = 1e-43
Identities = 71/181 (39%), Positives = 102/181 (56%), Gaps = 19/181 (10%)
Query: 92 IDCRNVYKSF--GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149
I +NV K F G+ L V+ I +GE GI+GPSG GK+T ++IIAGL P GE+Y
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63
Query: 150 IRGRKRAGLISDEEISGLR-----IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQIS 204
R L++ + IG+VFQ+ AL+ +LT EN+ F L N KM E+I
Sbjct: 64 FDDR----LVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPL-TNMKMSKEEIR 118
Query: 205 ELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGL 264
+ V+E + + V + P ELSG ++RVALAR+++ +P +LL DEP + L
Sbjct: 119 KRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALV-------KDPSLLLLDEPFSNL 171
Query: 265 D 265
D
Sbjct: 172 D 172
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 141 bits (358), Expect = 7e-40
Identities = 60/209 (28%), Positives = 98/209 (46%), Gaps = 20/209 (9%)
Query: 87 DGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG 146
D ++ N+ K FGE L GVS + G+ IIGP+G+GKST++ +I G L D+G
Sbjct: 3 DTMEILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEG 62
Query: 147 EVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENV----------GF--LLYE 194
VY + E+ I FQ+ +TV EN+ L Y+
Sbjct: 63 RVYFENKDITNKEPA-ELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYK 121
Query: 195 NSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEV 254
++E++ E + L + L + DR ELSGG K V + R+++ P++
Sbjct: 122 KWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALM-------TNPKM 174
Query: 255 LLYDEPTAGLDPIASTVVEDLIRSVHKKG 283
++ DEP AG+ P + + + + + KG
Sbjct: 175 IVMDEPIAGVAPGLAHDIFNHVLELKAKG 203
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 141 bits (358), Expect = 6e-39
Identities = 65/174 (37%), Positives = 102/174 (58%), Gaps = 12/174 (6%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
I N+ K FG L ++ KI+ GE + ++GPSG+GKST+L IAG+ P G++Y
Sbjct: 4 IKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFD 63
Query: 152 GRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENL 211
+ +++ +GLVFQ+ AL+ +TV +N+ F L E K E+I + V+E
Sbjct: 64 EK----DVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPL-ELRKAPREEIDKKVREVA 118
Query: 212 AAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
+ + + +R P +LSGG ++RVA+AR+++ EPEVLL DEP + LD
Sbjct: 119 KMLHIDKLLNRYPWQLSGGQQQRVAIARALV-------KEPEVLLLDEPLSNLD 165
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 8e-38
Identities = 64/174 (36%), Positives = 105/174 (60%), Gaps = 12/174 (6%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
I N+ K FG+ + GVSF+++ GE V ++GPSG GK+T L ++AG+ P GE+Y
Sbjct: 4 IRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFD 63
Query: 152 GRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENL 211
L++D +G+VFQ+ AL+ +TV EN+ F L ++ +++ + V E
Sbjct: 64 DV----LVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPL-RARRISKDEVEKRVVEIA 118
Query: 212 AAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
+ + + DR P++LSGG ++RVALAR+++ +P+VLL+DEP + LD
Sbjct: 119 RKLLIDNLLDRKPTQLSGGQQQRVALARALV-------KQPKVLLFDEPLSNLD 165
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 142 bits (360), Expect = 1e-37
Identities = 60/237 (25%), Positives = 103/237 (43%), Gaps = 41/237 (17%)
Query: 83 EPEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA 142
+ + + L++ + K +G L +IR GE +GI+GP+G GK+T +K++AG+
Sbjct: 349 RVDVERETLVEYPRLVKDYG-SFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE 407
Query: 143 PDKGEVYIRGRKRAGLIS--DEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRD 200
P +G+V ++ + I ++ TV E L
Sbjct: 408 PTEGKVEWDLT-----VAYKPQYIK-----AEYE-------GTVYE-----LLSKIDSSK 445
Query: 201 EQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEP 260
+ E L +G+ + DR +LSGG +RVA+A +++ + ++ L DEP
Sbjct: 446 LNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLL-------RDADIYLLDEP 498
Query: 261 TAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQ 317
+A LD V IR + +K E + +VV H I DRL +F+
Sbjct: 499 SAYLDVEQRLAVSRAIRHLMEKNE---------KTALVVEHDVLMIDYVSDRLIVFE 546
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 6e-35
Identities = 53/228 (23%), Positives = 92/228 (40%), Gaps = 25/228 (10%)
Query: 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154
+ +G + ++ G VGI+GP+GTGK+T +KI+AG L P+ E
Sbjct: 95 EDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDN 154
Query: 155 RAGLISDEEIS----GLRIGLVFQSAAL-FDSLTVRENVGFLLYENSKMRDEQISELVKE 209
E+ L+ G + + L + G ++ +E
Sbjct: 155 VIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGK---VRELLKKVDEVGKFEE 211
Query: 210 NLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAS 269
+ + L+ V DR +LSGG +RVA+A +++ + +DEP++ LD
Sbjct: 212 VVKELELENVLDRELHQLSGGELQRVAIAAALL-------RKAHFYFFDEPSSYLDIRQR 264
Query: 270 TVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQ 317
V +IR LAN G + +VV H + + D + +
Sbjct: 265 LKVARVIRR--------LANEGK--AVLVVEHDLAVLDYLSDVIHVVY 302
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 1e-37
Identities = 46/194 (23%), Positives = 93/194 (47%), Gaps = 13/194 (6%)
Query: 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149
+++ ++V E L +S ++R GE + ++GP+G GKST+L +AG+ KG +
Sbjct: 3 IVMQLQDV----AESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQ 57
Query: 150 IRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKE 209
G+ S +++ L + Q + V + + D+ +EL+ +
Sbjct: 58 FAGQPLEAW-SATKLA-LHRAYLSQQQTPPFATPVWHYLTLHQH------DKTRTELLND 109
Query: 210 NLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAS 269
A+ L R ++LSGG +RV LA ++ + + ++LL DEP LD
Sbjct: 110 VAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQ 169
Query: 270 TVVEDLIRSVHKKG 283
+ ++ ++ ++ ++G
Sbjct: 170 SALDKILSALSQQG 183
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 142 bits (359), Expect = 1e-37
Identities = 49/238 (20%), Positives = 98/238 (41%), Gaps = 43/238 (18%)
Query: 83 EPEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA 142
D ++ K+ G +L + E + ++G +GTGK+T++K++AG L
Sbjct: 345 LQNDSASRAFSYPSLKKTQG-DFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK 403
Query: 143 PDKGEVYIRGRKRAGLISDEEISGL--RIGLVFQSAALFDSLTVRENVGFLLYENSKMRD 200
PD+G+ + +S +I F TVR+ L ++ K+R
Sbjct: 404 PDEGQDIPKLN----------VSMKPQKIAPKFP-------GTVRQ----LFFK--KIRG 440
Query: 201 EQIS-ELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDE 259
+ ++ + + + + + + D+ LSGG +RVA+ ++ + ++ L DE
Sbjct: 441 QFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALG-------IPADIYLIDE 493
Query: 260 PTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQ 317
P+A LD + +IR N + +V H D++ +F+
Sbjct: 494 PSAYLDSEQRIICSKVIRRFIL--HNKK-------TAFIVEHDFIMATYLADKVIVFE 542
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 4e-36
Identities = 53/234 (22%), Positives = 89/234 (38%), Gaps = 30/234 (12%)
Query: 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154
+V + R G+ +G++G +G GKST LKI+AG P+ G
Sbjct: 81 AHVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEW 140
Query: 155 RAGL--ISDEEISGLRIGLVFQSAA--------LFDSLTVRENVGFLLYENSKMRDEQIS 204
+ + E+ ++ ++ V + E K+R E+
Sbjct: 141 QEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVG-ELLKLRMEKSP 199
Query: 205 ELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGL 264
E VK + + L+ V R +LSGG +R A+ S + E +V ++DEP++ L
Sbjct: 200 EDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCV-------QEADVYMFDEPSSYL 252
Query: 265 DPIASTVVEDLIRSVHKKGENGLANPGNIASYV-VVTHQHSTIRRAVDRLCLFQ 317
D +IRS+ YV V H S + D +C+
Sbjct: 253 DVKQRLNAAQIIRSLLAPT-----------KYVICVEHDLSVLDYLSDFVCIIY 295
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 137 bits (347), Expect = 3e-37
Identities = 68/180 (37%), Positives = 109/180 (60%), Gaps = 18/180 (10%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
+ +V+K FGE +R +S +++ GE + ++GPSG GK+T L++IAGL P +G++YI
Sbjct: 4 VRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIG 63
Query: 152 GRKRAGLISDEEISGL-----R-IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISE 205
+ L++D E R I +VFQS AL+ +TV +N+ F L + K+ ++I +
Sbjct: 64 DK----LVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPL-KLRKVPRQEIDQ 118
Query: 206 LVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
V+E +GL + +R P ELSGG ++RVAL R+I+ +P+V L DEP + LD
Sbjct: 119 RVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIV-------RKPQVFLMDEPLSNLD 171
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 6e-37
Identities = 61/174 (35%), Positives = 101/174 (58%), Gaps = 12/174 (6%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
+ N+ K FG + ++ I+ GE + ++GPSG GK+T L++IAGL P +G +Y
Sbjct: 12 VKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFG 71
Query: 152 GRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENL 211
R ++ I +VFQS A++ +TV EN+ F L + K ++I + V+
Sbjct: 72 DR----DVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPL-KIKKFPKDEIDKRVRWAA 126
Query: 212 AAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
+ ++ + +R P++LSGG ++RVA+AR+I+ VEP+VLL DEP + LD
Sbjct: 127 ELLQIEELLNRYPAQLSGGQRQRVAVARAIV-------VEPDVLLMDEPLSNLD 173
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 2e-36
Identities = 46/235 (19%), Positives = 98/235 (41%), Gaps = 35/235 (14%)
Query: 83 EPEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA 142
+ D + + K G L + + + GE +GI+GP+G GK+T +I+ G +
Sbjct: 261 DLSKDLKTKMKWTKIIKKLG-DFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT 319
Query: 143 PDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQ 202
D+G V + +S + +F + +D TV++ + +
Sbjct: 320 ADEGSVTPEKQI----LS------YKPQRIFPN---YDG-TVQQYLENASKDALSTSSWF 365
Query: 203 ISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA 262
E+ K + L + + ++LSGG +++ +A ++ E ++ + D+P++
Sbjct: 366 FEEVTKR----LNLHRLLESNVNDLSGGELQKLYIAATLA-------KEADLYVLDQPSS 414
Query: 263 GLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQ 317
LD +V I+ V ++ + A ++ H S DR+ +F+
Sbjct: 415 YLDVEERYIVAKAIKRVTRERK---------AVTFIIDHDLSIHDYIADRIIVFK 460
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 1e-29
Identities = 40/221 (18%), Positives = 83/221 (37%), Gaps = 33/221 (14%)
Query: 107 LRGVSFKI-RHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165
+ ++ +G++G +G GK+T+LKI+AG + P+ G+ + K L +
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVL---KRFR 70
Query: 166 GLRIGLVFQSAA---------LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL 216
G I F+ + + + N + E + +
Sbjct: 71 GKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGT--VNEILTKIDERGKKDEVKELLNM 128
Query: 217 KGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLI 276
+ ++ + LSGG +R+ +A S++ E +V ++D+P++ LD + I
Sbjct: 129 TNLWNKDANILSGGGLQRLLVAASLL-------READVYIFDQPSSYLDVRERMNMAKAI 181
Query: 277 RSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQ 317
R + K +VV H + D + +
Sbjct: 182 RELLKNK-----------YVIVVDHDLIVLDYLTDLIHIIY 211
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 137 bits (346), Expect = 5e-36
Identities = 60/237 (25%), Positives = 103/237 (43%), Gaps = 41/237 (17%)
Query: 83 EPEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA 142
E + + L+ + K +G L +I+ GE +GI+GP+G GK+T +K++AG+
Sbjct: 279 RVEIERETLVTYPRLVKDYG-SFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE 337
Query: 143 PDKGEVYIRGRKRAGLIS--DEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRD 200
P +G++ ++ + I ++ TV E L
Sbjct: 338 PTEGKIEWDLT-----VAYKPQYIK-----ADYE-------GTVYE-----LLSKIDASK 375
Query: 201 EQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEP 260
+ E L +G+ + DR +ELSGG +RVA+A +++ + ++ L DEP
Sbjct: 376 LNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLL-------RDADIYLLDEP 428
Query: 261 TAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQ 317
+A LD V IR + +K E + +VV H I DRL +F+
Sbjct: 429 SAYLDVEQRLAVSRAIRHLMEKNE---------KTALVVEHDVLMIDYVSDRLMVFE 476
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 2e-29
Identities = 53/230 (23%), Positives = 94/230 (40%), Gaps = 31/230 (13%)
Query: 96 NVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD------KGEVY 149
+ +G + ++ G VGI+GP+GTGKST +KI+AG L P+ +
Sbjct: 26 DCVHRYGVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGV 85
Query: 150 IRGRKRAGL-ISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVK 208
IR + L E++ I V + + L + G ++ + ++
Sbjct: 86 IRAFRGNELQNYFEKLKNGEIRPVVKPQ--YVDLIPKAVKGK---VIELLKKADETGKLE 140
Query: 209 ENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIA 268
E + A+ L+ V +R LSGG +RVA+A +++ +DEP++ LD
Sbjct: 141 EVVKALELENVLEREIQHLSGGELQRVAIAAALL-------RNATFYFFDEPSSYLDIRQ 193
Query: 269 STVVEDLIRSVHKKGENGLANPGNIASYV-VVTHQHSTIRRAVDRLCLFQ 317
IR + ++G V VV H + + D + +
Sbjct: 194 RLNAARAIRRLSEEG-----------KSVLVVEHDLAVLDYLSDIIHVVY 232
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 6e-35
Identities = 64/174 (36%), Positives = 101/174 (58%), Gaps = 18/174 (10%)
Query: 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154
+NV K++GE + + ++ I GE V +GPSG GKST+L++IAGL G+++I +
Sbjct: 7 QNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEK- 65
Query: 155 RAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAA- 213
++D + +G+VFQS AL+ L+V EN+ F L + + + E I++ V + A
Sbjct: 66 ---RMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGL-KLAGAKKEVINQRVNQ--VAE 119
Query: 214 -VGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV-EPEVLLYDEPTAGLD 265
+ L + DR P LSGG ++RVA+ R++ V EP V L DEP + LD
Sbjct: 120 VLQLAHLLDRKPKALSGGQRQRVAIGRTL--------VAEPSVFLLDEPLSNLD 165
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 3e-34
Identities = 47/236 (19%), Positives = 99/236 (41%), Gaps = 45/236 (19%)
Query: 89 DVLIDCRNVYKSFGEKH-ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE 147
+ + N+ + ++ + + ++F + G+ + ++G +G GKST+L ++ G+ P +G+
Sbjct: 2 NKALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGK 61
Query: 148 VYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENV--------GFLLYENSKMR 199
+ + IG V Q + + +V + V S
Sbjct: 62 IEVYQ---------------SIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSH-- 104
Query: 200 DEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDE 259
D Q+ + L + L + R + LSGG ++ + +AR+I E +++L DE
Sbjct: 105 DYQV---AMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIA-------SECKLILLDE 154
Query: 260 PTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCL 315
PT+ LD +V L+ + + + + V THQ + + ++ L
Sbjct: 155 PTSALDLANQDIVLSLLIDLAQ--SQNM-------TVVFTTHQPNQVVAIANKTLL 201
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 5e-31
Identities = 71/244 (29%), Positives = 119/244 (48%), Gaps = 51/244 (20%)
Query: 92 IDCRNV---YKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV 148
++ +N+ Y S E IL+G++ K++ G+ V ++G SG GKST ++++ L P G V
Sbjct: 388 LEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMV 447
Query: 149 YIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISEL 206
I G+ I + LR IG+V Q LF + T+ EN+ Y + ++I +
Sbjct: 448 SIDGQD----IRTINVRYLREIIGVVSQEPVLFAT-TIAENI---RYGREDVTMDEIEKA 499
Query: 207 VKENLAA-------------VGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPE 253
VKE A VG +G +LSGG K+R+A+AR+++ + P+
Sbjct: 500 VKEANAYDFIMKLPHQFDTLVGERGA------QLSGGQKQRIAIARALVRN-------PK 546
Query: 254 VLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313
+LL DE T+ LD + VV+ + + + +V+ H+ ST+R A D +
Sbjct: 547 ILLLDEATSALDTESEAVVQAALDKAREG-----------RTTIVIAHRLSTVRNA-DVI 594
Query: 314 CLFQ 317
F
Sbjct: 595 AGFD 598
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 123 bits (312), Expect = 6e-31
Identities = 63/244 (25%), Positives = 116/244 (47%), Gaps = 49/244 (20%)
Query: 92 IDCRNV---YKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV 148
+ V Y + +L+G+S +++ G+ + ++G SG GKST+++++ P G V
Sbjct: 1031 VQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSV 1090
Query: 149 YIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISEL 206
++ G++ I + LR +G+V Q LFD ++ EN+ + + + E+I
Sbjct: 1091 FLDGKE----IKQLNVQWLRAQLGIVSQEPILFDC-SIAENIAYGD-NSRVVSYEEIVRA 1144
Query: 207 VKENLA-------------AVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPE 253
KE VG KG ++LSGG K+R+A+AR+++ P
Sbjct: 1145 AKEANIHQFIDSLPDKYNTRVGDKG------TQLSGGQKQRIAIARALVRQ-------PH 1191
Query: 254 VLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313
+LL DE T+ LD + VV++ + + + +V+ H+ STI+ A D +
Sbjct: 1192 ILLLDEATSALDTESEKVVQEALDKAREG-----------RTCIVIAHRLSTIQNA-DLI 1239
Query: 314 CLFQ 317
+ Q
Sbjct: 1240 VVIQ 1243
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 3e-28
Identities = 60/260 (23%), Positives = 104/260 (40%), Gaps = 56/260 (21%)
Query: 83 EPEDDGDVL------IDCRNV---YKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTI 133
P + ++V Y + +L+G++F + G+ ++GP+G+GKST+
Sbjct: 2 SPLSGSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTV 61
Query: 134 LKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFL 191
++ L P G+V + G + + L + V Q LF + REN+ +
Sbjct: 62 AALLQNLYQPTGGKVLLDGEP----LVQYDHHYLHTQVAAVGQEPLLF-GRSFRENIAYG 116
Query: 192 LYENSKMRDEQISELVKENLA-------------AVGLKGVEDRLPSELSGGMKKRVALA 238
L M E+I+ + E+ A VG G +LSGG ++ VALA
Sbjct: 117 LTRTPTM--EEITAVAMESGAHDFISGFPQGYDTEVGETGN------QLSGGQRQAVALA 168
Query: 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVED-LIRSVHKKGENGLANPGNIASYV 297
R++I P +L+ D T+ LD V+ L S + +
Sbjct: 169 RALIRK-------PRLLILDNATSALDAGNQLRVQRLLYESPEWASR----------TVL 211
Query: 298 VVTHQHSTIRRAVDRLCLFQ 317
++T Q S RA + +
Sbjct: 212 LITQQLSLAERA-HHILFLK 230
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 7e-27
Identities = 64/253 (25%), Positives = 114/253 (45%), Gaps = 70/253 (27%)
Query: 92 IDCRNVYKSFGEKH--ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149
I RN+ + IL ++ I+ GE +GI+G SG+GKST+ K+I P+ G+V
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 150 IRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELV 207
I G ++ + + LR +G+V Q L + ++ +N+ N M E++
Sbjct: 68 IDGHD----LALADPNWLRRQVGVVLQDNVLLNR-SIIDNI---SLANPGMSVEKVIYAA 119
Query: 208 KENLAA-------------VGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEV 254
K A VG +G LSGG ++R+A+AR+++ + P++
Sbjct: 120 KLAGAHDFISELREGYNTIVGEQGA------GLSGGQRQRIAIARALVNN-------PKI 166
Query: 255 LLYDEPTAGLDPIASTVVEDLI----------RSVHKKGENGLANPGNIASYVVVTHQHS 304
L++DE T+ LD E +I R+V +++ H+ S
Sbjct: 167 LIFDEATSALD----YESEHVIMRNMHKICKGRTV-----------------IIIAHRLS 205
Query: 305 TIRRAVDRLCLFQ 317
T++ A DR+ + +
Sbjct: 206 TVKNA-DRIIVME 217
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 5e-26
Identities = 56/206 (27%), Positives = 106/206 (51%), Gaps = 29/206 (14%)
Query: 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE 147
D++++ ++++ +G H ++G+ K+ G+ V +IG +G GK+T L IAGL+ KG+
Sbjct: 3 SDIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGK 62
Query: 148 VYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVREN--VGFLLYENSKMRDEQISE 205
+ G+ I+ + I LV + +F LTV EN +G ++ +
Sbjct: 63 IIFNGQDITNK-PAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEG------- 114
Query: 206 LVKENLAAV-----GLKGVEDRLPSELSGG---MKKRVALARSIIFDNTKESVEPEVLLY 257
+K +L + LK +L LSGG M +A+ R+++ P++L+
Sbjct: 115 -IKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQM---LAIGRALM-------SRPKLLMM 163
Query: 258 DEPTAGLDPIASTVVEDLIRSVHKKG 283
DEP+ GL PI + V ++I+ ++++G
Sbjct: 164 DEPSLGLAPILVSEVFEVIQKINQEG 189
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 99.5 bits (249), Expect = 2e-24
Identities = 57/194 (29%), Positives = 91/194 (46%), Gaps = 42/194 (21%)
Query: 91 LIDCRNVYKSFG---EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE 147
++ R+V F + ILR +SF+ + + GPSG GKSTI ++ P GE
Sbjct: 1 MLSARHV--DFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGE 58
Query: 148 VYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLY-ENSKMRDEQIS 204
+ I G+ I + + R IG V Q +A+ T+REN L Y DE +
Sbjct: 59 ITIDGQP----IDNISLENWRSQIGFVSQDSAIMAG-TIREN---LTYGLEGDYTDEDLW 110
Query: 205 ELVKENLA-------------AVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251
+++ A VG +GV ++SGG ++R+A+AR+ + +
Sbjct: 111 QVLDLAFARSFVENMPDQLNTEVGERGV------KISGGQRQRLAIARAFLRN------- 157
Query: 252 PEVLLYDEPTAGLD 265
P++L+ DE TA LD
Sbjct: 158 PKILMLDEATASLD 171
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 98.4 bits (246), Expect = 1e-23
Identities = 70/240 (29%), Positives = 109/240 (45%), Gaps = 60/240 (25%)
Query: 92 IDCRNVYKSFG---EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV 148
I+ NV F + L+ VSF + G+ + ++GPSG GKSTIL+++ G +
Sbjct: 54 IEFENV--HFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCI 111
Query: 149 YIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISEL 206
I G+ IS + LR IG+V Q LF+ T+ +N+ Y ++++
Sbjct: 112 RIDGQD----ISQVTQASLRSHIGVVPQDTVLFND-TIADNIR---YGRVTAGNDEVEAA 163
Query: 207 VKENLAA----------------VGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250
+ AA VG +G+ +LSGG K+RVA+AR+I+
Sbjct: 164 AQ---AAGIHDAIMAFPEGYRTQVGERGL------KLSGGEKQRVAIARTILKA------ 208
Query: 251 EPEVLLYDEPTAGLDPIASTVVEDLI-RSVHKKGENGLANPGNIASYVVVTHQHSTIRRA 309
P ++L DE T+ LD T E I S+ K N + +VV H+ ST+ A
Sbjct: 209 -PGIILLDEATSALD----TSNERAIQASLAKVCAN--------RTTIVVAHRLSTVVNA 255
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 96.5 bits (241), Expect = 4e-23
Identities = 63/250 (25%), Positives = 115/250 (46%), Gaps = 55/250 (22%)
Query: 79 NTLFEPEDDGDVLIDCRNV---YKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILK 135
T E + ++ +V Y L+ ++F I G ++G +G+GKSTI K
Sbjct: 7 LTSHEKKFGVNIEFS--DVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAK 64
Query: 136 IIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLY 193
++ + G++ I G+ ++ + +R IG+V Q LF+ T++ N +LY
Sbjct: 65 LLYRFYDAE-GDIKIGGKN----VNKYNRNSIRSIIGIVPQDTILFNE-TIKYN---ILY 115
Query: 194 ENSKMRDEQISELVK--------ENL-----AAVGLKGVEDRLPSELSGGMKKRVALARS 240
DE++ + K E L VG KG+ +LSGG ++R+A+AR
Sbjct: 116 GKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGM------KLSGGERQRIAIARC 169
Query: 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLI-RSVHKKGENGLANPGNIASYVVV 299
++ D P+++++DE T+ LD + E L ++V +N + +++
Sbjct: 170 LLKD-------PKIVIFDEATSSLD----SKTEYLFQKAVEDLRKN--------RTLIII 210
Query: 300 THQHSTIRRA 309
H+ STI A
Sbjct: 211 AHRLSTISSA 220
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 95.9 bits (238), Expect = 2e-21
Identities = 44/176 (25%), Positives = 68/176 (38%), Gaps = 33/176 (18%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
+ ++G K +L +++ GI GP+G GKST+++ IA
Sbjct: 436 LCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIA------------- 482
Query: 152 GRKRAGLISDEEISGLRIGLVFQSAALFDS-LTVRENVGFLLYENSKMRDEQISELVKEN 210
+ G + EE R V S +V + V E +K+
Sbjct: 483 NGQVDGFPTQEEC---RTVYVEHDIDGTHSDTSVLDFV--------FESGVGTKEAIKDK 531
Query: 211 LAAVGLKGVE-DRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
L G S LSGG K ++ALAR+++ ++LL DEPT LD
Sbjct: 532 LIEFGFTDEMIAMPISALSGGWKMKLALARAVL-------RNADILLLDEPTNHLD 580
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 68.9 bits (168), Expect = 1e-12
Identities = 30/166 (18%), Positives = 55/166 (33%), Gaps = 15/166 (9%)
Query: 102 GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD 161
K + ++F+ + +IGP+G GKST++ ++ G L P GEVY
Sbjct: 684 TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTH---------- 733
Query: 162 EEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVED 221
RI + Q A + + + + +++ E + + E
Sbjct: 734 ---ENCRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDR--ETMDRANRQINENDAEA 788
Query: 222 RLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPI 267
G +R+A S E LL + +
Sbjct: 789 MNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERW 834
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 52.7 bits (126), Expect = 1e-07
Identities = 36/231 (15%), Positives = 71/231 (30%), Gaps = 44/231 (19%)
Query: 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE 163
++I + + I + + I R++ + E
Sbjct: 759 EYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYE 818
Query: 164 ISGLRIGLVFQSAALFDSLTVREN----VGFLLYENSKMRDEQISEL------------- 206
S L + + + + +N G L+ +SKM E +
Sbjct: 819 CSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRK 878
Query: 207 -VKENLAAVGLKG--VEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAG 263
++E+ + +GL V LSGG K ++ LA P +++ DEPT
Sbjct: 879 EIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTW-------QRPHLIVLDEPTNY 931
Query: 264 LDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLC 314
LD + + ++ G + +++TH L
Sbjct: 932 LDRDSLGALSKALKEF----------EGGV---IIITHS----AEFTKNLT 965
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 95.3 bits (238), Expect = 2e-21
Identities = 63/202 (31%), Positives = 88/202 (43%), Gaps = 42/202 (20%)
Query: 92 IDCRNVYKSF----GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE 147
ID +V SF E IL+ ++ I GE V +G SG GKST++ +I G+
Sbjct: 340 IDIDHV--SFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ 397
Query: 148 VYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISE 205
+ I G I D LR IGLV Q LF S TV+EN +L DE++ E
Sbjct: 398 ILIDGHN----IKDFLTGSLRNQIGLVQQDNILF-SDTVKEN---ILLGRPTATDEEVVE 449
Query: 206 LVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVALARSIIFDNTKESVEPEV 254
K LP +LSGG K+R+++AR + + P +
Sbjct: 450 AAK----MANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNN-------PPI 498
Query: 255 LLYDEPTAGLDPIASTVVEDLI 276
L+ DE T+ LD E +I
Sbjct: 499 LILDEATSALD----LESESII 516
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 93.4 bits (233), Expect = 7e-21
Identities = 53/191 (27%), Positives = 89/191 (46%), Gaps = 37/191 (19%)
Query: 92 IDCRNVYKSFG----EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE 147
++ RNV +F E LR ++ KI G+ V ++G SG+GKSTI +I D+G
Sbjct: 342 LEFRNV--TFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGH 399
Query: 148 VYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISE 205
+ + G + + ++ LR + LV Q+ LF+ TV N+ + E EQI E
Sbjct: 400 ILMDGHD----LREYTLASLRNQVALVSQNVHLFND-TVANNIAYARTEEYS--REQIEE 452
Query: 206 LVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVALARSIIFDNTKESVEPEV 254
+ +++ LSGG ++R+A+AR+++ D +
Sbjct: 453 AAR----MAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRD-------SPI 501
Query: 255 LLYDEPTAGLD 265
L+ DE T+ LD
Sbjct: 502 LILDEATSALD 512
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 92.3 bits (230), Expect = 1e-20
Identities = 54/191 (28%), Positives = 88/191 (46%), Gaps = 37/191 (19%)
Query: 92 IDCRNVYKSFG----EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE 147
+D ++V +F EK L VSF I G+ V ++G SG+GKSTI + D G
Sbjct: 342 VDVKDV--TFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGS 399
Query: 148 VYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISE 205
+ + G + D +++ LR LV Q+ LF+ T+ N+ + + EQI +
Sbjct: 400 ICLDGHD----VRDYKLTNLRRHFALVSQNVHLFND-TIANNIAY--AAEGEYTREQIEQ 452
Query: 206 LVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVALARSIIFDNTKESVEPEV 254
+ + +P + LSGG ++RVA+AR+++ D V
Sbjct: 453 AAR----QAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRD-------APV 501
Query: 255 LLYDEPTAGLD 265
L+ DE T+ LD
Sbjct: 502 LILDEATSALD 512
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 92.2 bits (230), Expect = 1e-20
Identities = 72/315 (22%), Positives = 126/315 (40%), Gaps = 75/315 (23%)
Query: 71 DSSKSENVNTLFEPEDDGDVLIDCRNVYKSF----GEKHILRGVSFKIRHGEAVGIIGPS 126
+ E N L P +G + NV F +L GV+F ++ G V ++G +
Sbjct: 323 KPAIEEADNALALPNVEGS--VSFENV--EFRYFENTDPVLSGVNFSVKPGSLVAVLGET 378
Query: 127 GTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTV 184
G+GKST++ +I L+ P++G V + + ++ LR I V Q LF S T+
Sbjct: 379 GSGKSTLMNLIPRLIDPERGRVEVDELD----VRTVKLKDLRGHISAVPQETVLF-SGTI 433
Query: 185 RENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSE-------LSGGMKKRVAL 237
+EN L + D++I E K + + + S SGG K+R+++
Sbjct: 434 KEN---LKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSI 490
Query: 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYV 297
AR+++ +P+VL+ D+ T+ +D T E I GL +
Sbjct: 491 ARALV-------KKPKVLILDDCTSSVD--PIT--EKRILD-------GLKRYTKGCTTF 532
Query: 298 VVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMT 357
++T + T A D+ I++ L+EGK+ G T
Sbjct: 533 IITQKIPTALLA-DK-------------ILV-----------------LHEGKVAGFG-T 560
Query: 358 HEFTSSSNPIVQQFA 372
H+ ++
Sbjct: 561 HKELLEHCKPYREIY 575
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 90.5 bits (225), Expect = 2e-20
Identities = 56/202 (27%), Positives = 96/202 (47%), Gaps = 36/202 (17%)
Query: 92 IDCRNVYKSF--GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149
+ +++ + G IL +SF I G+ VG++G +G+GKST+L LL + GE+
Sbjct: 20 MTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-GEIQ 78
Query: 150 IRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELV 207
I G + R G++ Q +F S T R+N L N+ D++I
Sbjct: 79 IDGVS----WDSITLEQWRKAFGVIPQKVFIF-SGTFRKN----LDPNAAHSDQEI---- 125
Query: 208 KENLAAVGLKGVEDRLPSEL-----------SGGMKKRVALARSIIFDNTKESVEPEVLL 256
+ VGL+ V ++ P +L S G K+ + LARS++ + ++LL
Sbjct: 126 WKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVL-------SKAKILL 178
Query: 257 YDEPTAGLDPIASTVVEDLIRS 278
DEP+A LDP+ ++ ++
Sbjct: 179 LDEPSAHLDPVTYQIIRRTLKQ 200
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 6e-16
Identities = 55/251 (21%), Positives = 106/251 (42%), Gaps = 56/251 (22%)
Query: 66 ATKFNDSSKSENVNTLFEPEDD-----GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAV 120
T F + E + ++ GD + N S +L+ ++FKI G+ +
Sbjct: 10 VTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNF--SLLGTPVLKDINFKIERGQLL 67
Query: 121 GIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFD 180
+ G +G GK+++L +I G L P +G++ G RI Q++ +
Sbjct: 68 AVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---------------RISFCSQNSWIM- 111
Query: 181 SLTVRENVGFLLYENSKMR--------DEQISELVKENLAAVGLKGVEDRLPSELSGGMK 232
T++EN+ + Y+ + R +E IS+ +++ +G G+ LSGG +
Sbjct: 112 PGTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGI------TLSGGQR 165
Query: 233 KRVALARSIIFDNTKESVEPEVLLYDEPTAGLDP-IASTVVEDLIRSVHKKGENGLANPG 291
R++LAR++ D ++ L D P LD + E + + +AN
Sbjct: 166 ARISLARAVYKDA-------DLYLLDSPFGYLDVLTEKEIFESCVCKL-------MAN-- 209
Query: 292 NIASYVVVTHQ 302
+ ++VT +
Sbjct: 210 --KTRILVTSK 218
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 5e-15
Identities = 43/192 (22%), Positives = 81/192 (42%), Gaps = 46/192 (23%)
Query: 87 DGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG 146
+V+++ + G +L+ ++FKI G+ + + G +G GK+++L +I G L P +G
Sbjct: 4 TTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG 63
Query: 147 EVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISEL 206
++ G RI Q + + T++EN+ F + + +
Sbjct: 64 KIKHSG---------------RISFCSQFSWIM-PGTIKENIIF----GVSYDEYRYRSV 103
Query: 207 VK--------ENLAA-----VGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPE 253
+K A +G G+ LSGG + R++LAR++ D +
Sbjct: 104 IKACQLEEDISKFAEKDNIVLGEGGI------TLSGGQRARISLARAVYKD-------AD 150
Query: 254 VLLYDEPTAGLD 265
+ L D P LD
Sbjct: 151 LYLLDSPFGYLD 162
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 7e-15
Identities = 43/176 (24%), Positives = 79/176 (44%), Gaps = 46/176 (26%)
Query: 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE 162
+ L G++F I G V ++G G GKS++L + + +G V I+G
Sbjct: 17 DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG---------- 66
Query: 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVK--------ENLAA- 213
+ V Q A + + ++REN+ F ++ + +++ E L +
Sbjct: 67 -----SVAYVPQQAWIQ-NDSLRENILF----GCQLEEPYYRSVIQACALLPDLEILPSG 116
Query: 214 ----VGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
+G KGV LSGG K+RV+LAR++ + ++ L+D+P + +D
Sbjct: 117 DRTEIGEKGV------NLSGGQKQRVSLARAVYSNA-------DIYLFDDPLSAVD 159
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 71.4 bits (176), Expect = 9e-14
Identities = 59/209 (28%), Positives = 98/209 (46%), Gaps = 43/209 (20%)
Query: 84 PEDDGDVLIDCRNVYKSFG---EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL 140
E G++ NV F +K +L+ ++F I+ G+ V ++GP+G+GK+TI+ ++
Sbjct: 349 REVRGEIEFK--NV--WFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRF 404
Query: 141 LAPDKGEVYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKM 198
D+G++ + G I + S LR IG+V Q LF + TV+EN L Y N
Sbjct: 405 YDVDRGQILVDGID----IRKIKRSSLRSSIGIVLQDTILFST-TVKEN---LKYGNPGA 456
Query: 199 RDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVALARSIIFDNTK 247
DE+I E K LP +LS G ++ +A+ R+ + +
Sbjct: 457 TDEEIKEAAK----LTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLAN--- 509
Query: 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLI 276
P++L+ DE T+ +D T E I
Sbjct: 510 ----PKILILDEATSNVD----TKTEKSI 530
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.4 bits (161), Expect = 5e-12
Identities = 52/415 (12%), Positives = 117/415 (28%), Gaps = 118/415 (28%)
Query: 24 STLANS--------GKKPINSFYYKAKE--------EQRKVVCACVAPPRDLGTDGFPAT 67
+ +A K F+ K E + + + P +D
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 68 KFNDSSKSENVNTLFEPEDDGDVLIDCRNVYKSFGEKHILRGVSF--KI----RHGEAVG 121
K S + L + + + L+ NV + KI R +
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQ----NAKAWNAFNLSCKILLTTRFKQVTD 279
Query: 122 IIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE------EISGLRIGLVFQS 175
+ + T ++ L + + + K + + R+ ++
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLL---KYLDCRPQDLPREVLTTNPRRLSII--- 333
Query: 176 AALFDSLTVRENVGFLLYENSKMRD-EQISELVKENLAAVGLKGVEDRLPSELSGGMKKR 234
A +R+ + ++N K + ++++ +++ +L L+ P+E +K
Sbjct: 334 AES-----IRDGLA--TWDNWKHVNCDKLTTIIESSLNV--LE------PAE----YRKM 374
Query: 235 -VALARSIIF-DNTKESVEPEVL--LYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANP 290
L+ +F + + +L ++ + + V ++ +HK L
Sbjct: 375 FDRLS---VFPPSAH--IPTILLSLIWFDVI-------KSDVMVVVNKLHKY---SLVE- 418
Query: 291 GNIASYVVVTHQ---------------HSTIRRAVDRLCLFQ------------IFGHID 323
+ H +I + F + HI
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI- 477
Query: 324 VVIILG---AVAPDKEVFFIYRLIFL----YEGKIVWQGMTHEFTSSSNPIVQQF 371
G E ++R++FL E KI + S +QQ
Sbjct: 478 -----GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL 527
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 62.9 bits (154), Expect = 1e-11
Identities = 59/239 (24%), Positives = 92/239 (38%), Gaps = 76/239 (31%)
Query: 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD----KGEVYI 150
R+++ S + IL+GV+ + GE ++GP+G GKST+ KI+AG P+ +GE+ +
Sbjct: 7 RDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAG--DPEYTVERGEILL 64
Query: 151 RG----------RKRAGLI----SDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENS 196
G R R GL E+ G+ FL
Sbjct: 65 DGENILELSPDERARKGLFLAFQYPVEVPGVT------------------IANFLRLALQ 106
Query: 197 KMRDEQIS-----ELVKENLAAVGLKGVEDRLPSEL----SGGMKKR-----VALARSII 242
++ VK+ L + E L L SGG KKR + +
Sbjct: 107 AKLGREVGVAEFWTKVKKALELLDWD--ESYLSRYLNEGFSGGEKKRNEILQLLV----- 159
Query: 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTH 301
+EP + DE +GLD I D ++ V +G N + P +V+TH
Sbjct: 160 -------LEPTYAVLDETDSGLD-I------DALKVV-ARGVNAMRGPNF--GALVITH 201
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 4e-11
Identities = 65/234 (27%), Positives = 100/234 (42%), Gaps = 62/234 (26%)
Query: 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD----KGEVYI 150
++++ S +K ILRG+S + GE I+GP+G+GKST+ +AG D G V
Sbjct: 24 KDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAG--REDYEVTGGTVEF 81
Query: 151 RG----------RKRAGLI----SDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENS 196
+G R G+ EI G+ F AL VR G
Sbjct: 82 KGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSN-QFFLQTALN---AVRSYRG-----QE 132
Query: 197 KMRDEQISELVKENLAAVGLKGVEDRLPSEL----SGGMKKR-----VALARSIIFDNTK 247
+ +L++E +A + + ED L + SGG KKR +A+
Sbjct: 133 TLDRFDFQDLMEEKIALLKMP--EDLLTRSVNVGFSGGEKKRNDILQMAV---------- 180
Query: 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTH 301
+EPE+ + DE +GLD I D ++ V G N L + S+++VTH
Sbjct: 181 --LEPELCILDESDSGLD-I------DALKVV-ADGVNSLRDGKR--SFIIVTH 222
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 2e-05
Identities = 24/121 (19%), Positives = 40/121 (33%), Gaps = 14/121 (11%)
Query: 190 FLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSE-LSGGMKKRVALARSIIFDNTKE 248
F + K + + EN + + P LSGG + + LA +
Sbjct: 22 FAEFTEGKYSEVVVRAE--ENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYL- 78
Query: 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRR 308
+ E +L+ DEPT LD LI + + ++V+H
Sbjct: 79 AGEISLLILDEPTPYLD---EERRRKLITIMER-----YLKKIP--QVILVSHDEELKDA 128
Query: 309 A 309
A
Sbjct: 129 A 129
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 1e-04
Identities = 23/120 (19%), Positives = 44/120 (36%), Gaps = 12/120 (10%)
Query: 191 LLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSE-LSGGMKKRVALARSIIFDNTKES 249
+ E ++ + ++ +EN + + P LSGG + + LA + +
Sbjct: 212 IFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSL-YLA 270
Query: 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA 309
E +L+ DEPT LD LI + + + ++V+H A
Sbjct: 271 GEISLLILDEPTPYLDEER---RRKLITIMERYLKKI-------PQVILVSHDEELKDAA 320
|
| >2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* Length = 456 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 3e-04
Identities = 38/191 (19%), Positives = 67/191 (35%), Gaps = 13/191 (6%)
Query: 73 SKSENVNTLFEPEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKST 132
K ++ + L+ N ++ G I+ + K G AV + GP GTGK+
Sbjct: 21 VKGLGLDESGLAKQAASGLVGQENAREACGV--IVELIKSKKMAGRAVLLAGPPGTGKTA 78
Query: 133 ILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLL 192
+ IA L + G + + EI + ++ +R +
Sbjct: 79 LALAIAQELGSKVPFCPMVGSE----VYSTEIKKTEV----LMENFRRAIGLRIKETKEV 130
Query: 193 YENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEP 252
YE ++ EN K + + + K++ L SI KE VE
Sbjct: 131 YEGEVTE---LTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKERVEA 187
Query: 253 EVLLYDEPTAG 263
++Y E +G
Sbjct: 188 GDVIYIEANSG 198
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 382 | |||
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 100.0 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 100.0 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 100.0 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 100.0 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 100.0 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 100.0 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.96 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.96 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.96 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.95 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.95 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.95 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.94 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.93 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.93 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.93 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.93 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.92 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.92 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.92 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.91 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.9 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.9 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.9 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.89 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.89 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.89 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.89 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.88 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.88 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.87 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.87 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.86 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.86 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.86 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.85 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.85 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.85 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.84 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.83 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.83 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.83 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.83 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.82 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.82 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.81 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.8 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.79 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.78 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.77 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.77 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.76 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.75 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.75 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.74 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.73 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.7 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.7 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.7 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.69 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.68 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.68 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.68 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.68 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.67 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.66 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.66 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.65 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.64 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.63 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.62 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.59 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.57 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.57 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.56 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.54 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.53 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 99.51 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.5 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.5 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.49 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.48 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.47 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 99.46 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.45 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.45 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 99.44 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.42 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.4 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 99.37 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 99.28 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 99.26 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 99.25 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 99.24 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 99.23 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.23 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.22 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 99.21 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 99.21 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 99.19 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 99.15 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 99.12 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 99.12 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 99.08 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 99.04 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.88 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.86 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.84 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.82 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 98.82 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.8 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.75 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.72 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.67 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.65 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 98.64 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.63 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 98.61 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 98.6 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.6 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.57 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 98.53 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 98.47 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 98.45 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.43 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 98.42 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.38 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 98.37 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 98.33 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 98.3 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 98.29 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 98.24 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 98.23 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 98.22 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 98.21 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 98.2 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 98.2 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 98.17 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 98.14 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 98.12 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 98.03 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 98.03 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 98.02 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.99 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 97.89 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.89 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.88 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 97.85 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 97.85 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.83 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.82 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 97.81 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.81 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.8 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.78 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.78 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.75 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 97.71 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 97.67 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 97.66 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 97.66 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 97.65 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 97.64 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.54 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.53 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.48 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 97.47 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 97.45 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 97.45 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 97.44 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.38 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 97.36 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 97.35 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 97.33 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 97.32 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 97.31 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 97.25 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 97.21 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.17 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 97.14 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 97.14 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 97.07 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 97.04 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 97.03 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 97.02 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 97.02 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.98 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.97 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 96.95 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 96.91 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 96.89 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 96.86 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 96.84 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 96.82 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 96.81 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 96.81 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 96.79 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 96.73 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 96.67 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 96.64 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 96.64 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 96.63 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 96.62 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 96.61 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.6 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 96.59 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 96.59 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 96.58 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 96.56 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 96.54 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 96.53 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 96.52 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 96.5 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 96.48 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 96.47 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 96.44 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 96.43 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 96.4 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 96.39 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.32 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 96.31 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 96.28 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 96.25 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 96.23 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 96.22 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 96.2 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 96.18 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 96.17 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 96.17 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 96.17 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 96.16 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 96.16 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 96.16 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 96.14 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 96.13 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 96.13 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 96.12 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 96.12 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 96.11 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 96.1 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 96.1 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 96.09 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 96.09 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 96.09 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 96.08 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 96.07 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 96.07 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 96.06 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 96.06 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 96.06 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 96.06 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 96.05 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 96.04 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 96.03 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 96.03 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 96.02 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 96.02 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 96.02 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 96.01 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 96.0 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 96.0 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 95.98 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 95.97 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 95.94 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 95.94 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 95.93 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 95.92 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 95.92 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 95.92 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 95.92 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 95.89 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 95.89 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 95.89 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 95.89 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 95.89 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 95.88 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 95.86 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 95.86 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 95.86 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 95.86 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 95.85 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 95.82 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 95.81 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 95.81 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 95.79 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 95.77 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 95.76 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 95.74 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 95.73 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 95.7 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 95.69 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 95.69 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 95.66 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 95.65 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 95.65 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 95.64 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 95.64 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 95.63 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 95.61 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 95.6 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 95.6 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 95.59 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 95.59 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 95.59 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 95.57 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 95.57 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 95.56 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 95.56 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 95.55 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 95.55 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 95.54 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 95.51 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 95.5 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 95.5 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 95.48 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 95.47 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 95.45 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 95.44 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 95.44 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 95.42 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 95.42 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 95.4 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 95.4 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 95.4 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 95.38 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 95.38 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 95.37 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 95.37 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 95.36 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 95.36 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 95.35 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 95.35 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 95.34 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 95.34 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 95.33 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 95.33 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 95.32 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 95.32 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 95.31 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 95.31 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 95.3 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 95.3 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 95.3 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 95.29 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 95.29 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 95.29 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 95.28 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 95.28 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 95.27 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 95.27 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 95.27 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 95.23 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 95.23 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 95.17 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.16 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 95.15 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 95.14 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 95.12 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 95.12 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 95.11 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 95.1 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 95.1 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 95.1 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 95.08 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 95.08 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 95.06 | |
| 4tmk_A | 213 | Protein (thymidylate kinase); ATP:DTMP phosphotran | 95.04 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 95.03 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 95.02 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 94.97 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 94.97 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 94.95 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 94.93 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 94.92 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 94.91 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 94.91 | |
| 3tmk_A | 216 | Thymidylate kinase; phosphotransferase; HET: T5A; | 94.86 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 94.78 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 94.78 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 94.77 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 94.75 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 94.74 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 94.74 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 94.73 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 94.73 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 94.72 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 94.72 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 94.71 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 94.68 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 94.66 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 94.64 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 94.64 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 94.58 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 94.51 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 94.45 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 94.44 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 94.31 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 94.3 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 94.18 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 94.14 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 94.13 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 94.12 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 94.12 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 93.88 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 93.88 | |
| 4hlc_A | 205 | DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri | 93.84 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 93.78 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 93.78 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 92.81 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 93.65 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 93.58 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 93.58 | |
| 3eph_A | 409 | TRNA isopentenyltransferase; transferase, alternat | 93.55 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 93.54 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 93.39 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 93.37 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 93.36 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 93.31 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 93.29 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 93.24 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 93.21 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 93.18 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 93.16 | |
| 2qen_A | 350 | Walker-type ATPase; unknown function; HET: ADP; 2. | 93.15 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 93.12 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 93.11 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 93.07 | |
| 1knx_A | 312 | Probable HPR(Ser) kinase/phosphatase; HPR kinase, | 93.0 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 92.98 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 92.96 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 92.9 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 92.84 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 92.79 | |
| 3pvs_A | 447 | Replication-associated recombination protein A; ma | 92.79 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 92.78 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 92.77 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 92.75 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 92.65 | |
| 1x6v_B | 630 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 92.63 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 92.6 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 92.56 |
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-60 Score=470.58 Aligned_cols=240 Identities=32% Similarity=0.540 Sum_probs=212.2
Q ss_pred CCcceEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChh
Q 016804 87 DGDVLIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE 162 (382)
Q Consensus 87 ~~~~~I~~~nvs~~yg~----~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~ 162 (382)
...++|+++||+|+|++ .++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.......
T Consensus 20 ~~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~ 99 (366)
T 3tui_C 20 DDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESE 99 (366)
T ss_dssp ---CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHH
T ss_pred CCCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHH
Confidence 34568999999999963 46999999999999999999999999999999999999999999999999987643222
Q ss_pred h-hccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHH
Q 016804 163 E-ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSI 241 (382)
Q Consensus 163 ~-~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL 241 (382)
. ..+++||||||++.+|+.+||+||+.+++.. .+.+.++..+++.++|+.+||.++.+++|.+|||||||||+|||||
T Consensus 100 ~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~-~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL 178 (366)
T 3tui_C 100 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL-DNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARAL 178 (366)
T ss_dssp HHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHT
T ss_pred HHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHH
Confidence 1 1234699999999999999999999998743 3456777788899999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccc
Q 016804 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFG 320 (382)
Q Consensus 242 ~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~ 320 (382)
+. +|+||||||||+|||+.++..++++|++++++ | +|||+||||++++.++||||
T Consensus 179 ~~-------~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g----------~Tii~vTHdl~~~~~~aDrv------- 234 (366)
T 3tui_C 179 AS-------NPKVLLCDQATSALDPATTRSILELLKDINRRLG----------LTILLITHEMDVVKRICDCV------- 234 (366)
T ss_dssp TT-------CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSC----------CEEEEEESCHHHHHHHCSEE-------
T ss_pred hc-------CCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCC----------CEEEEEecCHHHHHHhCCEE-------
Confidence 97 69999999999999999999999999999876 5 69999999999999999988
Q ss_pred cchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcC
Q 016804 321 HIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 374 (382)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 374 (382)
++|++|+|+++|++++++ .+.+++++.|+..
T Consensus 235 -----------------------~vl~~G~iv~~g~~~ev~~~p~~~~~~~~~~~ 266 (366)
T 3tui_C 235 -----------------------AVISNGELIEQDTVSEVFSHPKTPLAQKFIQS 266 (366)
T ss_dssp -----------------------EEEETTEEEECCBHHHHHSSCCSHHHHHHHHH
T ss_pred -----------------------EEEECCEEEEEcCHHHHHhCCCcHHHHHHHhh
Confidence 999999999999999976 4667888877654
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-59 Score=468.89 Aligned_cols=235 Identities=30% Similarity=0.484 Sum_probs=207.5
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
+|+++||+|+|+++++|+||||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++..........+++||
T Consensus 4 ~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig 83 (359)
T 3fvq_A 4 ALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLG 83 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCE
T ss_pred EEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEE
Confidence 69999999999999999999999999999999999999999999999999999999999999987321111112234699
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
||||++.+|+++||+||+.|++.. .+...++.++++.++++.+||.++.+++|.+|||||||||+|||||+.
T Consensus 84 ~vfQ~~~l~p~ltV~eni~~~l~~-~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~------- 155 (359)
T 3fvq_A 84 YLVQEGVLFPHLTVYRNIAYGLGN-GKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAP------- 155 (359)
T ss_dssp EECTTCCCCTTSCHHHHHHTTSTT-SSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTT-------
T ss_pred EEeCCCcCCCCCCHHHHHHHHHHH-cCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHc-------
Confidence 999999999999999999998643 234556677889999999999999999999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
+|++|||||||++||+..+.++++.|.++.++ | +|+|+||||++++..+||||
T Consensus 156 ~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g----------~tvi~vTHd~~ea~~~aDri---------------- 209 (359)
T 3fvq_A 156 DPELILLDEPFSALDEQLRRQIREDMIAALRANG----------KSAVFVSHDREEALQYADRI---------------- 209 (359)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTT----------CEEEEECCCHHHHHHHCSEE----------------
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHHCCEE----------------
Confidence 69999999999999999999999988887654 5 69999999999999999988
Q ss_pred cCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHc
Q 016804 330 AVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFAS 373 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~ 373 (382)
++|++|+|++.|+++++. .+.+..+..|..
T Consensus 210 --------------~vl~~G~i~~~g~~~el~~~p~~~~~a~~~g 240 (359)
T 3fvq_A 210 --------------AVMKQGRILQTASPHELYRQPADLDAALFIG 240 (359)
T ss_dssp --------------EEEETTEEEEEECHHHHHHSCSCHHHHHHHS
T ss_pred --------------EEEECCEEEEEeCHHHHHhCcccHHHHHhcc
Confidence 999999999999999976 455666766664
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-59 Score=468.75 Aligned_cols=231 Identities=32% Similarity=0.533 Sum_probs=211.7
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
+|+++||+|+|++.++|+||||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.... . .+++||
T Consensus 3 ~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~-~---~~r~ig 78 (381)
T 3rlf_A 3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTP-P---AERGVG 78 (381)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCC-G---GGSCEE
T ss_pred EEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCC-H---HHCCEE
Confidence 599999999999999999999999999999999999999999999999999999999999999986532 2 124699
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
||||++.+||++||+||+.|++.. .+.++++.++++.++++.++|.++.+++|.+|||||||||+|||||+.
T Consensus 79 ~VfQ~~~l~p~ltV~eni~~~~~~-~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~------- 150 (381)
T 3rlf_A 79 MVFQSYALYPHLSVAENMSFGLKL-AGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVA------- 150 (381)
T ss_dssp EECTTCCCCTTSCHHHHHTHHHHH-TTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHH-------
T ss_pred EEecCCcCCCCCCHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHc-------
Confidence 999999999999999999998754 346677788899999999999999999999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
+|+||||||||++||+..+.++++.|++++++ | +|+|+||||++++..+||||
T Consensus 151 ~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g----------~tii~vTHd~~ea~~~aDri---------------- 204 (381)
T 3rlf_A 151 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLG----------RTMIYVTHDQVEAMTLADKI---------------- 204 (381)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHC----------CEEEEECSCHHHHHHHCSEE----------------
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCC----------CEEEEEECCHHHHHHhCCEE----------------
Confidence 69999999999999999999999999999765 6 59999999999999999988
Q ss_pred cCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHc
Q 016804 330 AVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFAS 373 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~ 373 (382)
++|++|+|++.|++.++. .+.++++..|..
T Consensus 205 --------------~vl~~G~i~~~g~~~~l~~~p~~~~v~~~~g 235 (381)
T 3rlf_A 205 --------------VVLDAGRVAQVGKPLELYHYPADRFVAGFIG 235 (381)
T ss_dssp --------------EEEETTEEEEEECHHHHHHCCSBHHHHHHSS
T ss_pred --------------EEEECCEEEEEeCHHHHHhCCccHHHHHhcC
Confidence 999999999999999975 567888888775
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-58 Score=441.23 Aligned_cols=236 Identities=35% Similarity=0.551 Sum_probs=205.6
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCC-hhhhccce
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS-DEEISGLR 168 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~-~~~~~~~~ 168 (382)
++|+++||+|+|+++++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++. ... .....+.+
T Consensus 23 ~~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~-~~~~~~~~~~~~ 101 (263)
T 2olj_A 23 QMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLK-AKDTNLNKVREE 101 (263)
T ss_dssp CSEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESS-STTCCHHHHHHH
T ss_pred heEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECC-CccccHHHHhCc
Confidence 4799999999999889999999999999999999999999999999999999999999999999874 111 11111235
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~ 248 (382)
||||||++.+|+.+||+||+.++.....+....+..+++.++++.+||.++.++++.+|||||||||+|||||+.
T Consensus 102 i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~----- 176 (263)
T 2olj_A 102 VGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAM----- 176 (263)
T ss_dssp EEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT-----
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHC-----
Confidence 999999999999999999999864222334455556778999999999999999999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehh
Q 016804 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIIL 328 (382)
Q Consensus 249 a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~ 328 (382)
+|++|||||||+|||+.++..+.++|++++++| +|||+||||++++.++|||+
T Consensus 177 --~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g----------~tvi~vtHd~~~~~~~~d~v--------------- 229 (263)
T 2olj_A 177 --EPKIMLFDEPTSALDPEMVGEVLSVMKQLANEG----------MTMVVVTHEMGFAREVGDRV--------------- 229 (263)
T ss_dssp --CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTT----------CEEEEECSCHHHHHHHCSEE---------------
T ss_pred --CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCC----------CEEEEEcCCHHHHHHhCCEE---------------
Confidence 699999999999999999999999999998766 59999999999999999988
Q ss_pred ccCCCCcccccccEEEEEeCCeEEEEeccccccc-CCCHHHHHHHc
Q 016804 329 GAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFAS 373 (382)
Q Consensus 329 ~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~ 373 (382)
++|++|++++.|+++++.. +..+.+..++.
T Consensus 230 ---------------~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 260 (263)
T 2olj_A 230 ---------------LFMDGGYIIEEGKPEDLFDRPQHERTKAFLS 260 (263)
T ss_dssp ---------------EEEETTEEEEEECHHHHHHSCCSHHHHHHHT
T ss_pred ---------------EEEECCEEEEECCHHHHHhCcccHHHHHHHH
Confidence 9999999999998888764 44566666654
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-58 Score=440.79 Aligned_cols=236 Identities=33% Similarity=0.531 Sum_probs=204.4
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCC----------CC
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAG----------LI 159 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~----------~~ 159 (382)
++|+++||+|+|+++++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.. ..
T Consensus 5 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 84 (262)
T 1b0u_A 5 NKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVAD 84 (262)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESC
T ss_pred ceEEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccC
Confidence 47999999999998899999999999999999999999999999999999999999999999998741 11
Q ss_pred Chh-hhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCccc-ccCCCCCCChHHHHHHHH
Q 016804 160 SDE-EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGV-EDRLPSELSGGMKKRVAL 237 (382)
Q Consensus 160 ~~~-~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~-~~~~~~~LSGGqrQRVaI 237 (382)
... ...+.+||||||++.+|+.+||+||+.++.....+....+..+++.++++.+||.+. .++++.+|||||||||+|
T Consensus 85 ~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~l 164 (262)
T 1b0u_A 85 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSI 164 (262)
T ss_dssp HHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHH
T ss_pred hhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHH
Confidence 111 111236999999999999999999999864222234455556778999999999998 999999999999999999
Q ss_pred HHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccc
Q 016804 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQ 317 (382)
Q Consensus 238 ArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~ 317 (382)
||||+. +|+||||||||+|||+.++..+.++|++++++| +|||+||||++++.++|||+
T Consensus 165 AraL~~-------~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g----------~tvi~vtHd~~~~~~~~d~v---- 223 (262)
T 1b0u_A 165 ARALAM-------EPDVLLFDEPTSALDPELVGEVLRIMQQLAEEG----------KTMVVVTHEMGFARHVSSHV---- 223 (262)
T ss_dssp HHHHHT-------CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTT----------CCEEEECSCHHHHHHHCSEE----
T ss_pred HHHHhc-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHhCCEE----
Confidence 999997 699999999999999999999999999998766 59999999999999999988
Q ss_pred ccccchheehhccCCCCcccccccEEEEEeCCeEEEEeccccccc-CCCHHHHHHH
Q 016804 318 IFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFA 372 (382)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~-~~~~~~~~~~ 372 (382)
++|++|++++.|+++++.. +..+.+..++
T Consensus 224 --------------------------~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 253 (262)
T 1b0u_A 224 --------------------------IFLHQGKIEEEGDPEQVFGNPQSPRLQQFL 253 (262)
T ss_dssp --------------------------EEEETTEEEEEECHHHHHHSCCSHHHHHHH
T ss_pred --------------------------EEEECCEEEEeCCHHHHHhCcchHHHHHHH
Confidence 9999999999998888754 3455555554
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-58 Score=432.31 Aligned_cols=223 Identities=36% Similarity=0.544 Sum_probs=192.8
Q ss_pred eEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhh--h
Q 016804 91 LIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE--I 164 (382)
Q Consensus 91 ~I~~~nvs~~yg~----~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~--~ 164 (382)
+|+++||+|+|++ .++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++........ .
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 5899999999963 469999999999999999999999999999999999999999999999999865432221 1
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhHhhc--CCCCHHHHHHHHHHHHHHcCCccc-ccCCCCCCChHHHHHHHHHHHH
Q 016804 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYEN--SKMRDEQISELVKENLAAVGLKGV-EDRLPSELSGGMKKRVALARSI 241 (382)
Q Consensus 165 ~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~--~~~~~~~~~~~v~~~L~~~gL~~~-~~~~~~~LSGGqrQRVaIArAL 241 (382)
.+.+||||||++.+|+.+||+||+.++.... .....++..+++.++++.+++.+. .++++.+|||||||||+|||||
T Consensus 81 ~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral 160 (235)
T 3tif_A 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARAL 160 (235)
T ss_dssp HHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHH
T ss_pred hhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 1235999999999999999999999876432 134556667788999999999875 5999999999999999999999
Q ss_pred hcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccc
Q 016804 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFG 320 (382)
Q Consensus 242 ~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~ 320 (382)
++ +|++|||||||+|||+.++..++++|++++++ | +|+|+||||++.+ .+|||+
T Consensus 161 ~~-------~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g----------~tvi~vtHd~~~~-~~~d~i------- 215 (235)
T 3tif_A 161 AN-------NPPIILADQPTWALDSKTGEKIMQLLKKLNEEDG----------KTVVVVTHDINVA-RFGERI------- 215 (235)
T ss_dssp TT-------CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHC----------CEEEEECSCHHHH-TTSSEE-------
T ss_pred Hc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcC----------CEEEEEcCCHHHH-HhCCEE-------
Confidence 97 69999999999999999999999999999765 6 5999999999864 788877
Q ss_pred cchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 321 HIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|+|++.++++++.
T Consensus 216 -----------------------~~l~~G~i~~~~~~~~~~ 233 (235)
T 3tif_A 216 -----------------------IYLKDGEVEREEKLRGFD 233 (235)
T ss_dssp -----------------------EEEETTEEEEEEECC---
T ss_pred -----------------------EEEECCEEEEEcChhhhc
Confidence 999999999999877754
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-58 Score=455.90 Aligned_cols=234 Identities=40% Similarity=0.670 Sum_probs=209.8
Q ss_pred CcceEEEEeEEEEe-CCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhcc
Q 016804 88 GDVLIDCRNVYKSF-GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (382)
Q Consensus 88 ~~~~I~~~nvs~~y-g~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~ 166 (382)
+.++|+++||+|+| +++++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++.... . .+
T Consensus 11 ~~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~-~---~~ 86 (355)
T 1z47_A 11 GSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLP-P---QK 86 (355)
T ss_dssp CCEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCC-G---GG
T ss_pred CCceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCC-h---hh
Confidence 45689999999999 8888999999999999999999999999999999999999999999999999976431 1 23
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCC
Q 016804 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT 246 (382)
Q Consensus 167 ~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~ 246 (382)
++||||||++.+|+++||+||+.|++.. .+.+.++.++++.++++.+||+++.+++|.+|||||||||+|||||+.
T Consensus 87 r~ig~v~Q~~~l~~~ltv~eni~~~l~~-~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~--- 162 (355)
T 1z47_A 87 RNVGLVFQNYALFQHMTVYDNVSFGLRE-KRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAP--- 162 (355)
T ss_dssp SSEEEECGGGCCCTTSCHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT---
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHc---
Confidence 4699999999999999999999998743 234566667889999999999999999999999999999999999997
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchhe
Q 016804 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVV 325 (382)
Q Consensus 247 ~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~ 325 (382)
+|++|||||||++||+..+.++.+.|+++.++ | +|+|+||||++++..+|||+
T Consensus 163 ----~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g----------~tvi~vTHd~~~a~~~adri------------ 216 (355)
T 1z47_A 163 ----RPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMG----------VTSVFVTHDQEEALEVADRV------------ 216 (355)
T ss_dssp ----CCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHT----------CEEEEECSCHHHHHHHCSEE------------
T ss_pred ----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEECCCHHHHHHhCCEE------------
Confidence 69999999999999999999999999999765 5 59999999999999999988
Q ss_pred ehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHc
Q 016804 326 IILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFAS 373 (382)
Q Consensus 326 ~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~ 373 (382)
++|++|+|++.|+++++. .+.+..+..|+.
T Consensus 217 ------------------~vl~~G~i~~~g~~~~l~~~p~~~~~~~~~g 247 (355)
T 1z47_A 217 ------------------LVLHEGNVEQFGTPEEVYEKPGTLFVASFIG 247 (355)
T ss_dssp ------------------EEEETTEEEEEECHHHHHHSCSSHHHHHHTT
T ss_pred ------------------EEEECCEEEEEcCHHHHHhCccchHHHHhcC
Confidence 999999999999998875 455677777764
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-57 Score=426.00 Aligned_cols=218 Identities=34% Similarity=0.490 Sum_probs=193.3
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChh--hhccc
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE--EISGL 167 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~--~~~~~ 167 (382)
++|+++||+|+|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++....... ...+.
T Consensus 3 ~~l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 82 (224)
T 2pcj_A 3 EILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNR 82 (224)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHH
T ss_pred cEEEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhC
Confidence 4799999999999889999999999999999999999999999999999999999999999999976432111 11123
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 016804 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (382)
Q Consensus 168 ~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~ 247 (382)
+||||||++.+|+.+||+||+.++.... +....+..+++.++++.+||.+..++++.+|||||||||+|||||+.
T Consensus 83 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~---- 157 (224)
T 2pcj_A 83 KLGFVFQFHYLIPELTALENVIVPMLKM-GKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALAN---- 157 (224)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTT----
T ss_pred cEEEEecCcccCCCCCHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHc----
Confidence 6999999999999999999999875432 34445556778999999999999999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheeh
Q 016804 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVII 327 (382)
Q Consensus 248 ~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~ 327 (382)
+|++|||||||+|||+.++..+.++|++++++| +|+|+||||++++ .+|||+
T Consensus 158 ---~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g----------~tvi~vtHd~~~~-~~~d~v-------------- 209 (224)
T 2pcj_A 158 ---EPILLFADEPTGNLDSANTKRVMDIFLKINEGG----------TSIVMVTHERELA-ELTHRT-------------- 209 (224)
T ss_dssp ---CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTT----------CEEEEECSCHHHH-TTSSEE--------------
T ss_pred ---CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC----------CEEEEEcCCHHHH-HhCCEE--------------
Confidence 699999999999999999999999999998776 5999999999987 788877
Q ss_pred hccCCCCcccccccEEEEEeCCeEEEEec
Q 016804 328 LGAVAPDKEVFFIYRLIFLYEGKIVWQGM 356 (382)
Q Consensus 328 ~~~~~~~~~~~~~~~ii~l~~G~i~~~g~ 356 (382)
++|++|+++++|+
T Consensus 210 ----------------~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 210 ----------------LEMKDGKVVGEIT 222 (224)
T ss_dssp ----------------EEEETTEEEEEEE
T ss_pred ----------------EEEECCEEEEEee
Confidence 9999999999984
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-58 Score=443.65 Aligned_cols=225 Identities=30% Similarity=0.537 Sum_probs=197.8
Q ss_pred cceEEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccc
Q 016804 89 DVLIDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~-~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~ 167 (382)
+++|+++||+|+|++ ..+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++..........+.
T Consensus 5 ~~~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 5 DYILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp CEEEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred CcEEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 358999999999975 4699999999999999999999999999999999999999999999999997421111111233
Q ss_pred eEEEEecCC--CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCC
Q 016804 168 RIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (382)
Q Consensus 168 ~Ig~V~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~ 245 (382)
+||||||++ .+| .+||+||+.|+... .+.+.++..+++.++++.+||.++.++++.+|||||||||+|||||+.
T Consensus 85 ~ig~v~Q~~~~~~~-~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~-- 160 (275)
T 3gfo_A 85 SIGIVFQDPDNQLF-SASVYQDVSFGAVN-MKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVM-- 160 (275)
T ss_dssp SEEEECSSGGGTCC-SSBHHHHHHHHHHT-SCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTT--
T ss_pred cEEEEEcCcccccc-cCcHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHc--
Confidence 699999997 345 68999999998643 345667778889999999999999999999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchh
Q 016804 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVH-KKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDV 324 (382)
Q Consensus 246 ~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~-~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~ 324 (382)
+|++|||||||+|||+.++..++++|++++ ++| +|||+||||++++.++||||
T Consensus 161 -----~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g----------~tvi~vtHdl~~~~~~~drv----------- 214 (275)
T 3gfo_A 161 -----EPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELG----------ITIIIATHDIDIVPLYCDNV----------- 214 (275)
T ss_dssp -----CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHC----------CEEEEEESCCSSGGGGCSEE-----------
T ss_pred -----CCCEEEEECccccCCHHHHHHHHHHHHHHHhhCC----------CEEEEEecCHHHHHHhCCEE-----------
Confidence 699999999999999999999999999997 556 59999999999999999988
Q ss_pred eehhccCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 325 VIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|+++++|+++++..
T Consensus 215 -------------------~~l~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 215 -------------------FVMKEGRVILQGNPKEVFA 233 (275)
T ss_dssp -------------------EEEETTEEEEEECHHHHTH
T ss_pred -------------------EEEECCEEEEECCHHHHhc
Confidence 9999999999999988754
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-57 Score=455.42 Aligned_cols=231 Identities=34% Similarity=0.571 Sum_probs=206.6
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
+|+++||+|+|+++++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.... . .+++||
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~-~---~~r~ig 78 (359)
T 2yyz_A 3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIP-P---KYREVG 78 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC-G---GGTTEE
T ss_pred EEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCC-h---hhCcEE
Confidence 589999999999999999999999999999999999999999999999999999999999999976432 1 123699
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
||||++.+|+++||+||+.|++.. .+.+.++.++++.++++.++|+++.+++|.+|||||||||+|||||+.
T Consensus 79 ~v~Q~~~l~~~ltv~eni~~~~~~-~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~------- 150 (359)
T 2yyz_A 79 MVFQNYALYPHMTVFENIAFPLRA-RRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVK------- 150 (359)
T ss_dssp EECSSCCCCTTSCHHHHHHGGGSS-SCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT-------
T ss_pred EEecCcccCCCCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHc-------
Confidence 999999999999999999997632 233344556778999999999999999999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
+|++|||||||++||+..+.++.+.|++++++ | +|+|+||||++++..+|||+
T Consensus 151 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g----------~tvi~vTHd~~~~~~~adri---------------- 204 (359)
T 2yyz_A 151 QPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELG----------ITSVYVTHDQAEAMTMASRI---------------- 204 (359)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHC----------CEEEEEESCHHHHHHHCSEE----------------
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEcCCHHHHHHhCCEE----------------
Confidence 69999999999999999999999999999765 5 59999999999999999988
Q ss_pred cCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHc
Q 016804 330 AVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFAS 373 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~ 373 (382)
++|++|+|++.|+++++. .+.+..+..|+.
T Consensus 205 --------------~vl~~G~i~~~g~~~~l~~~p~~~~~~~~~g 235 (359)
T 2yyz_A 205 --------------AVFNQGKLVQYGTPDEVYDSPKNMFVASFIG 235 (359)
T ss_dssp --------------EEEETTEEEEEECHHHHHHSCSBHHHHHHSS
T ss_pred --------------EEEECCEEEEeCCHHHHHhCcccHHHHHHhC
Confidence 999999999999999876 455677777764
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-58 Score=438.18 Aligned_cols=237 Identities=25% Similarity=0.364 Sum_probs=203.2
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
++|+++||+|+|+++++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.... .... +..+
T Consensus 10 ~~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~-~~~~-~~~i 87 (266)
T 4g1u_C 10 ALLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQ-PKAL-ARTR 87 (266)
T ss_dssp CEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSC-HHHH-HHHE
T ss_pred ceEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCC-HHHH-hheE
Confidence 5799999999999999999999999999999999999999999999999999999999999999986542 2222 2359
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
+|+||++.+++.+||+||+.++...+ ...+..+++.++++.+++.++.++++.+|||||||||+|||||++.|+ ..
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~-~~ 163 (266)
T 4g1u_C 88 AVMRQYSELAFPFSVSEVIQMGRAPY---GGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQ-PQ 163 (266)
T ss_dssp EEECSCCCCCSCCBHHHHHHGGGTTS---CSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCC-SS
T ss_pred EEEecCCccCCCCCHHHHHHhhhhhc---CcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccc-cC
Confidence 99999999888899999999876432 223345678899999999999999999999999999999999996110 00
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
.+|++|||||||+|||+.++..++++|++++++++ +|+|+||||++++.++|||+
T Consensus 164 ~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~---------~tvi~vtHdl~~~~~~~d~v---------------- 218 (266)
T 4g1u_C 164 PTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEP---------LAVCCVLHDLNLAALYADRI---------------- 218 (266)
T ss_dssp CCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSS---------EEEEEECSCHHHHHHHCSEE----------------
T ss_pred CCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCC---------CEEEEEEcCHHHHHHhCCEE----------------
Confidence 14999999999999999999999999999987642 69999999999999999988
Q ss_pred cCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHHc
Q 016804 330 AVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFAS 373 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 373 (382)
++|++|++++.|+++++... +.+.+++.
T Consensus 219 --------------~vl~~G~i~~~g~~~~~~~~--~~l~~~~~ 246 (266)
T 4g1u_C 219 --------------MLLAQGKLVACGTPEEVLNA--ETLTQWYQ 246 (266)
T ss_dssp --------------EEEETTEEEEEECHHHHCCH--HHHHHHCC
T ss_pred --------------EEEECCEEEEEcCHHHHhCc--HHHHHHhC
Confidence 99999999999998887642 34444443
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-57 Score=455.35 Aligned_cols=231 Identities=35% Similarity=0.567 Sum_probs=208.1
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
+|+++||+|+|+++++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.... . .+++||
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~-~---~~r~ig 78 (362)
T 2it1_A 3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELP-P---KDRNVG 78 (362)
T ss_dssp CEEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC-G---GGTTEE
T ss_pred EEEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCC-H---hHCcEE
Confidence 599999999999888999999999999999999999999999999999999999999999999976432 1 123699
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
||||++.+|+++||+||+.|++.. .+.+.++.+++++++++.+||+++.+++|.+|||||||||+|||||+.
T Consensus 79 ~v~Q~~~l~~~ltv~eni~~~~~~-~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~------- 150 (362)
T 2it1_A 79 LVFQNWALYPHMTVYKNIAFPLEL-RKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVK------- 150 (362)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTT-------
T ss_pred EEecCcccCCCCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHc-------
Confidence 999999999999999999998643 234566667889999999999999999999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
+|++|||||||++||+..+.++.+.|++++++ | +|+|+||||++++..+|||+
T Consensus 151 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g----------~tvi~vTHd~~~a~~~adri---------------- 204 (362)
T 2it1_A 151 EPEVLLLDEPLSNLDALLRLEVRAELKRLQKELG----------ITTVYVTHDQAEALAMADRI---------------- 204 (362)
T ss_dssp CCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHT----------CEEEEEESCHHHHHHHCSEE----------------
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHHHhCC----------CEEEEECCCHHHHHHhCCEE----------------
Confidence 69999999999999999999999999999765 5 59999999999999999988
Q ss_pred cCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHc
Q 016804 330 AVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFAS 373 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~ 373 (382)
++|++|+|++.|+++++. .+.+..+..|+.
T Consensus 205 --------------~vl~~G~i~~~g~~~~~~~~p~~~~~~~~~g 235 (362)
T 2it1_A 205 --------------AVIREGEILQVGTPDEVYYKPKYKFVGGFLG 235 (362)
T ss_dssp --------------EEEETTEEEEEECHHHHHHSCSBHHHHHHSB
T ss_pred --------------EEEECCEEEEEcCHHHHHhCccchHHHHHcC
Confidence 999999999999999875 455677777764
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-57 Score=428.55 Aligned_cols=224 Identities=28% Similarity=0.483 Sum_probs=197.6
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
.++|+++||+|+|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++... ......+.+
T Consensus 4 ~~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~~~ 82 (240)
T 1ji0_A 4 DIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNK-PAHVINRMG 82 (240)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTC-CHHHHHHTT
T ss_pred CceEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCC-CHHHHHhCC
Confidence 4589999999999988999999999999999999999999999999999999999999999999997543 222222335
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcC-CcccccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVG-LKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~g-L~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~ 247 (382)
||||||++.+|+.+||+||+.++.... ...++..+.++++++.++ +.+..++++.+|||||||||+|||||+.
T Consensus 83 i~~v~q~~~l~~~ltv~enl~~~~~~~--~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~---- 156 (240)
T 1ji0_A 83 IALVPEGRRIFPELTVYENLMMGAYNR--KDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMS---- 156 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTC--CCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTT----
T ss_pred EEEEecCCccCCCCcHHHHHHHhhhcC--CCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHc----
Confidence 999999999999999999999864211 223345667888999995 9888999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheeh
Q 016804 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVII 327 (382)
Q Consensus 248 ~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~ 327 (382)
+|++|||||||+|||+.++..+.++|++++++| +|+|+||||++++.++|||+
T Consensus 157 ---~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g----------~tvi~vtHd~~~~~~~~d~v-------------- 209 (240)
T 1ji0_A 157 ---RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEG----------TTILLVEQNALGALKVAHYG-------------- 209 (240)
T ss_dssp ---CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTT----------CCEEEEESCHHHHHHHCSEE--------------
T ss_pred ---CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCC----------CEEEEEecCHHHHHHhCCEE--------------
Confidence 699999999999999999999999999998765 59999999999999999988
Q ss_pred hccCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 328 LGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 328 ~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|++++.|+++++..
T Consensus 210 ----------------~~l~~G~i~~~g~~~~~~~ 228 (240)
T 1ji0_A 210 ----------------YVLETGQIVLEGKASELLD 228 (240)
T ss_dssp ----------------EEEETTEEEEEEEHHHHHT
T ss_pred ----------------EEEECCEEEEEcCHHHHhc
Confidence 9999999999998888753
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-58 Score=437.23 Aligned_cols=223 Identities=29% Similarity=0.492 Sum_probs=197.3
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
.++|+++||+|+|+++++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... ......+.+
T Consensus 5 ~~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~~~ 83 (257)
T 1g6h_A 5 MEILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNK-EPAELYHYG 83 (257)
T ss_dssp CEEEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTC-CHHHHHHHT
T ss_pred CcEEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-CHHHHHhCC
Confidence 3579999999999999999999999999999999999999999999999999999999999999997543 222212235
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhh-cCC-----------CCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHH
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYE-NSK-----------MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVA 236 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~-~~~-----------~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVa 236 (382)
||||||++.+|+.+||+||+.++... ..+ ....+..+++.++++.+||.+..++++.+|||||||||+
T Consensus 84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~ 163 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVE 163 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHH
T ss_pred EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHH
Confidence 99999999999999999999986532 111 223445667889999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccc
Q 016804 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLF 316 (382)
Q Consensus 237 IArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~ 316 (382)
|||||+. +|++|||||||+|||+.++..+.++|++++++| +|||+||||++++.++|||+
T Consensus 164 iAraL~~-------~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g----------~tvi~vtHd~~~~~~~~d~v--- 223 (257)
T 1g6h_A 164 IGRALMT-------NPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKG----------ITFLIIEHRLDIVLNYIDHL--- 223 (257)
T ss_dssp HHHHHHT-------CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTT----------CEEEEECSCCSTTGGGCSEE---
T ss_pred HHHHHHc-------CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCC----------CEEEEEecCHHHHHHhCCEE---
Confidence 9999997 699999999999999999999999999998766 59999999999999999988
Q ss_pred cccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccc
Q 016804 317 QIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHE 359 (382)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~ 359 (382)
++|++|++++.|++++
T Consensus 224 ---------------------------~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 224 ---------------------------YVMFNGQIIAEGRGEE 239 (257)
T ss_dssp ---------------------------EEEETTEEEEEEESHH
T ss_pred ---------------------------EEEECCEEEEEeCHHH
Confidence 9999999999998887
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-57 Score=455.15 Aligned_cols=235 Identities=33% Similarity=0.536 Sum_probs=207.8
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCCh--hhhccce
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD--EEISGLR 168 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~--~~~~~~~ 168 (382)
+|+++||+|+|+++++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++...... ....+++
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ 82 (372)
T 1g29_1 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRD 82 (372)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSS
T ss_pred EEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCC
Confidence 59999999999999999999999999999999999999999999999999999999999999987430000 0112346
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~ 248 (382)
||||||++.+|+++||+||+.|++... +...++.+++++++++.+||+++.+++|.+|||||||||+|||||+.
T Consensus 83 ig~v~Q~~~l~~~ltv~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~----- 156 (372)
T 1g29_1 83 IAMVFQSYALYPHMTVYDNIAFPLKLR-KVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVR----- 156 (372)
T ss_dssp EEEECSCCCCCTTSCHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHT-----
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhc-----
Confidence 999999999999999999999986432 34566667889999999999999999999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheeh
Q 016804 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVII 327 (382)
Q Consensus 249 a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~ 327 (382)
+|++|||||||++||+..+.++.+.|+++.++ | +|+|+||||++++..+|||+
T Consensus 157 --~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g----------~tvi~vTHd~~~a~~~adri-------------- 210 (372)
T 1g29_1 157 --KPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLG----------VTTIYVTHDQVEAMTMGDRI-------------- 210 (372)
T ss_dssp --CCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHT----------CEEEEEESCHHHHHHHCSEE--------------
T ss_pred --CCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcC----------CEEEEECCCHHHHHHhCCEE--------------
Confidence 69999999999999999999999999999765 5 59999999999999999988
Q ss_pred hccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHc
Q 016804 328 LGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFAS 373 (382)
Q Consensus 328 ~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~ 373 (382)
++|++|+|++.|+++++. .+.+..+..|+.
T Consensus 211 ----------------~vl~~G~i~~~g~~~~l~~~p~~~~~~~~~g 241 (372)
T 1g29_1 211 ----------------AVMNRGVLQQVGSPDEVYDKPANTFVAGFIG 241 (372)
T ss_dssp ----------------EEEETTEEEEEECHHHHHHSCSBHHHHHHSS
T ss_pred ----------------EEEeCCEEEEeCCHHHHHhCcccHHHHHHhC
Confidence 999999999999999875 456677777764
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-57 Score=454.92 Aligned_cols=231 Identities=32% Similarity=0.525 Sum_probs=201.4
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
+|+++||+|+|+++++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.... . .+++||
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~-~---~~r~ig 86 (372)
T 1v43_A 11 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLP-P---KDRNIS 86 (372)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC-G---GGGTEE
T ss_pred eEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCC-h---hhCcEE
Confidence 599999999999989999999999999999999999999999999999999999999999999976432 1 123699
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
||||++.+|+++||+||+.|++.. .+.+.++.++++.++++.++|+++.+++|.+|||||||||+|||||+.
T Consensus 87 ~v~Q~~~l~~~ltv~eni~~~~~~-~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~------- 158 (372)
T 1v43_A 87 MVFQSYAVWPHMTVYENIAFPLKI-KKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVV------- 158 (372)
T ss_dssp EEEC------CCCHHHHHHTTCC---CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTT-------
T ss_pred EEecCcccCCCCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhc-------
Confidence 999999999999999999997532 234556667889999999999999999999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
+|++|||||||++||+..+.++.+.|++++++ | .|+|+||||++++..+|||+
T Consensus 159 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g----------~tvi~vTHd~~~a~~~adri---------------- 212 (372)
T 1v43_A 159 EPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLK----------VTTIYVTHDQVEAMTMGDRI---------------- 212 (372)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHT----------CEEEEEESCHHHHHHHCSEE----------------
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHhCCEE----------------
Confidence 69999999999999999999999999999765 5 59999999999999999988
Q ss_pred cCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHc
Q 016804 330 AVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFAS 373 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~ 373 (382)
++|++|+|++.|+++++. .+.+..+..|+.
T Consensus 213 --------------~vl~~G~i~~~g~~~~l~~~p~~~~~a~~~g 243 (372)
T 1v43_A 213 --------------AVMNRGQLLQIGSPTEVYLRPNSVFVATFIG 243 (372)
T ss_dssp --------------EEEETTEEEEEECHHHHHHCCSBHHHHHHSS
T ss_pred --------------EEEECCEEEEeCCHHHHHhCcccHHHHHHhC
Confidence 999999999999999875 455677777764
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-57 Score=452.73 Aligned_cols=235 Identities=36% Similarity=0.544 Sum_probs=207.1
Q ss_pred eEEEEeEEEEeCCee--eeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCC-hhhhccc
Q 016804 91 LIDCRNVYKSFGEKH--ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS-DEEISGL 167 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~--iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~-~~~~~~~ 167 (382)
+|+++||+|+|++++ +|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++..... .....++
T Consensus 3 ~l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r 82 (353)
T 1oxx_K 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (353)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhC
Confidence 599999999998887 9999999999999999999999999999999999999999999999998743100 0011234
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 016804 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (382)
Q Consensus 168 ~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~ 247 (382)
+||||||++.+|+++||+||+.|++.. .+.+.++.++++.++++.+||+++.+++|.+|||||||||+|||||+.
T Consensus 83 ~ig~v~Q~~~l~~~ltv~eni~~~~~~-~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~---- 157 (353)
T 1oxx_K 83 KIGMVFQTWALYPNLTAFENIAFPLTN-MKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVK---- 157 (353)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTT-SSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT----
T ss_pred CEEEEeCCCccCCCCCHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHh----
Confidence 699999999999999999999997642 234556667889999999999999999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchhee
Q 016804 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVI 326 (382)
Q Consensus 248 ~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~ 326 (382)
+|++|||||||++||+..+.++.+.|++++++ | +|+|+||||++++..+|||+
T Consensus 158 ---~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g----------~tvi~vTHd~~~~~~~adri------------- 211 (353)
T 1oxx_K 158 ---DPSLLLLDEPFSNLDARMRDSARALVKEVQSRLG----------VTLLVVSHDPADIFAIADRV------------- 211 (353)
T ss_dssp ---CCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHC----------CEEEEEESCHHHHHHHCSEE-------------
T ss_pred ---CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEE-------------
Confidence 69999999999999999999999999999765 5 59999999999999999988
Q ss_pred hhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHc
Q 016804 327 ILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFAS 373 (382)
Q Consensus 327 ~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~ 373 (382)
++|++|+|++.|+++++. .+.+..+..|..
T Consensus 212 -----------------~vl~~G~i~~~g~~~~l~~~p~~~~~~~~~g 242 (353)
T 1oxx_K 212 -----------------GVLVKGKLVQVGKPEDLYDNPVSIQVASLIG 242 (353)
T ss_dssp -----------------EEEETTEEEEEECHHHHHHSCSSHHHHHHHS
T ss_pred -----------------EEEECCEEEEEcCHHHHHhCcccHHHHHhcC
Confidence 999999999999999875 455677777764
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-57 Score=448.09 Aligned_cols=227 Identities=30% Similarity=0.556 Sum_probs=202.5
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
||+++||+|+|+++ +|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++... ... +++||
T Consensus 1 ml~~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~-~~~---~r~ig 75 (348)
T 3d31_A 1 MIEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDL-SPE---KHDIA 75 (348)
T ss_dssp CEEEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTS-CHH---HHTCE
T ss_pred CEEEEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCC-chh---hCcEE
Confidence 58999999999888 99999999999999999999999999999999999999999999999997542 221 23699
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
||||++.+|+++||+||+.|++.... .... +++.++++.++|+++.+++|.+|||||||||+|||||+.
T Consensus 76 ~v~Q~~~l~~~ltv~enl~~~~~~~~-~~~~---~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~------- 144 (348)
T 3d31_A 76 FVYQNYSLFPHMNVKKNLEFGMRMKK-IKDP---KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVT------- 144 (348)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHC-CCCH---HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTS-------
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcC-CCHH---HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHc-------
Confidence 99999999999999999999864322 2222 668899999999999999999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
+|++|||||||++||+..+..+.+.|++++++ | +|+|+||||++++..+|||+
T Consensus 145 ~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g----------~tii~vTHd~~~~~~~adri---------------- 198 (348)
T 3d31_A 145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNK----------LTVLHITHDQTEARIMADRI---------------- 198 (348)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTT----------CEEEEEESCHHHHHHHCSEE----------------
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEE----------------
Confidence 69999999999999999999999999999765 5 59999999999999999988
Q ss_pred cCCCCcccccccEEEEEeCCeEEEEeccccccc-CCCHHHHHHHc
Q 016804 330 AVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFAS 373 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~ 373 (382)
++|++|+|++.|+++++.. +.+..+..|..
T Consensus 199 --------------~vl~~G~i~~~g~~~~~~~~p~~~~~a~~~g 229 (348)
T 3d31_A 199 --------------AVVMDGKLIQVGKPEEIFEKPVEGRVASFVG 229 (348)
T ss_dssp --------------EEESSSCEEEEECHHHHHSSCCTTHHHHHHC
T ss_pred --------------EEEECCEEEEECCHHHHHhCcccHHHHHhcC
Confidence 9999999999999998764 55667777765
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-56 Score=428.69 Aligned_cols=221 Identities=28% Similarity=0.492 Sum_probs=197.9
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
++|+++||+|+|+++++|++|||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.. ..... +.+|
T Consensus 14 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~--~~~~~-~~~i 90 (256)
T 1vpl_A 14 GAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE--EPHEV-RKLI 90 (256)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT--CHHHH-HTTE
T ss_pred CeEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc--cHHHH-hhcE
Confidence 57999999999999999999999999999999999999999999999999999999999999998753 12222 2369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
|||||++.+|+.+||+||+.++.... +...++..+++.++++.+||.++.++++.+|||||||||+|||||+.
T Consensus 91 ~~v~q~~~l~~~ltv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~------ 163 (256)
T 1vpl_A 91 SYLPEEAGAYRNMQGIEYLRFVAGFY-ASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMV------ 163 (256)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTT------
T ss_pred EEEcCCCCCCCCCcHHHHHHHHHHHc-CCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHc------
Confidence 99999999999999999999865322 23444556678899999999999999999999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
+|++|||||||+|||+.++..+.++|++++++| +|||++|||++++..+|||+
T Consensus 164 -~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g----------~tiiivtHd~~~~~~~~d~v---------------- 216 (256)
T 1vpl_A 164 -NPRLAILDEPTSGLDVLNAREVRKILKQASQEG----------LTILVSSHNMLEVEFLCDRI---------------- 216 (256)
T ss_dssp -CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTT----------CEEEEEECCHHHHTTTCSEE----------------
T ss_pred -CCCEEEEeCCccccCHHHHHHHHHHHHHHHhCC----------CEEEEEcCCHHHHHHHCCEE----------------
Confidence 699999999999999999999999999998766 59999999999999999988
Q ss_pred cCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 330 AVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.|+++++.
T Consensus 217 --------------~~l~~G~i~~~g~~~~~~ 234 (256)
T 1vpl_A 217 --------------ALIHNGTIVETGTVEELK 234 (256)
T ss_dssp --------------EEEETTEEEEEEEHHHHH
T ss_pred --------------EEEECCEEEEecCHHHHH
Confidence 999999999999888774
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-56 Score=419.13 Aligned_cols=226 Identities=32% Similarity=0.501 Sum_probs=195.9
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
||+++||+|+|++ +|+|+||+|++ |+++|+||||||||||+|+|+|+++|++|+|.++|+++... .. .+.+||
T Consensus 1 ml~~~~l~~~y~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~---~~~~i~ 73 (240)
T 2onk_A 1 MFLKVRAEKRLGN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPL-PP---ERRGIG 73 (240)
T ss_dssp CCEEEEEEEEETT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTS-CT---TTSCCB
T ss_pred CEEEEEEEEEeCC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcC-ch---hhCcEE
Confidence 4789999999986 49999999999 99999999999999999999999999999999999987542 11 133699
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
||||++.+|+.+||+||+.++.... .....++++.++++.+||.++.++++.+|||||||||+|||||+.
T Consensus 74 ~v~q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~------- 143 (240)
T 2onk_A 74 FVPQDYALFPHLSVYRNIAYGLRNV---ERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVI------- 143 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTS---CHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTT-------
T ss_pred EEcCCCccCCCCcHHHHHHHHHHHc---CCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHc-------
Confidence 9999999999999999999864211 112225678899999999999999999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
+|++|||||||+|||+.++..++++|++++++ | +|+|++|||++++..+|||+
T Consensus 144 ~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g----------~tvi~vtHd~~~~~~~~d~i---------------- 197 (240)
T 2onk_A 144 QPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFD----------VPILHVTHDLIEAAMLADEV---------------- 197 (240)
T ss_dssp CCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHT----------CCEEEEESCHHHHHHHCSEE----------------
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEE----------------
Confidence 69999999999999999999999999999764 5 59999999999999999988
Q ss_pred cCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHHc
Q 016804 330 AVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFAS 373 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 373 (382)
++|++|++++.|+++++....++.+..++.
T Consensus 198 --------------~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 227 (240)
T 2onk_A 198 --------------AVMLNGRIVEKGKLKELFSAKNGEVAEFLS 227 (240)
T ss_dssp --------------EEEETTEEEEEECHHHHHHSCCSSHHHHGG
T ss_pred --------------EEEECCEEEEECCHHHHHhCchHHHHHHhc
Confidence 999999999999888875322445555543
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-56 Score=427.93 Aligned_cols=235 Identities=27% Similarity=0.410 Sum_probs=196.2
Q ss_pred CCcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECC--CCCChhhh
Q 016804 87 DGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRA--GLISDEEI 164 (382)
Q Consensus 87 ~~~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~--~~~~~~~~ 164 (382)
...++|+++||+|+|+++++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++. .. .....
T Consensus 17 ~~~~~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~-~~~~~ 95 (279)
T 2ihy_A 17 GSHMLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGY-SAETV 95 (279)
T ss_dssp --CEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---C-CHHHH
T ss_pred CCCceEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccC-CHHHH
Confidence 3456899999999999999999999999999999999999999999999999999999999999998864 22 12222
Q ss_pred ccceEEEEecCCCC-C-CCCCHHHHHHhhHhhc---CCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHH
Q 016804 165 SGLRIGLVFQSAAL-F-DSLTVRENVGFLLYEN---SKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALAR 239 (382)
Q Consensus 165 ~~~~Ig~V~Q~~~l-~-~~lTV~eni~~~~~~~---~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIAr 239 (382)
+.+||||||++.+ + +.+||+||+.++.... .....++..+++.++++.+||.++.++++.+|||||||||+|||
T Consensus 96 -~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAr 174 (279)
T 2ihy_A 96 -RQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIAR 174 (279)
T ss_dssp -HTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHH
T ss_pred -cCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHH
Confidence 3369999999764 3 3469999998864211 11122344567889999999999999999999999999999999
Q ss_pred HHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEE--EEEccCHHHHHHhhchhcccc
Q 016804 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASY--VVVTHQHSTIRRAVDRLCLFQ 317 (382)
Q Consensus 240 AL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~ti--IivTHdl~~~~~~aDrv~~~~ 317 (382)
||+. +|++|||||||+|||+.++..++++|+++.++| +|| |+||||++++.++|||+
T Consensus 175 aL~~-------~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g----------~tv~~iivtHd~~~~~~~~d~v---- 233 (279)
T 2ihy_A 175 ALMG-------QPQVLILDEPAAGLDFIARESLLSILDSLSDSY----------PTLAMIYVTHFIEEITANFSKI---- 233 (279)
T ss_dssp HHHT-------CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHC----------TTCEEEEEESCGGGCCTTCCEE----
T ss_pred HHhC-------CCCEEEEeCCccccCHHHHHHHHHHHHHHHHCC----------CEEEEEEEecCHHHHHHhCCEE----
Confidence 9997 699999999999999999999999999998766 489 99999999999999988
Q ss_pred ccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHH
Q 016804 318 IFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFA 372 (382)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 372 (382)
++|++|++++.|+++++... +.+..++
T Consensus 234 --------------------------~~l~~G~i~~~g~~~~~~~~--~~~~~~~ 260 (279)
T 2ihy_A 234 --------------------------LLLKDGQSIQQGAVEDILTS--ENMSRFF 260 (279)
T ss_dssp --------------------------EEEETTEEEEEEEHHHHCSH--HHHHHHH
T ss_pred --------------------------EEEECCEEEEECCHHHHhcc--HHHHHHh
Confidence 99999999999988887632 3344444
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-55 Score=420.68 Aligned_cols=217 Identities=37% Similarity=0.590 Sum_probs=190.7
Q ss_pred eEEEEeEEEEeC--C---eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhc
Q 016804 91 LIDCRNVYKSFG--E---KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165 (382)
Q Consensus 91 ~I~~~nvs~~yg--~---~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~ 165 (382)
+|+++||+|+|+ + +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. ...
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~----~~~- 76 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKG----YEI- 76 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCH----HHH-
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECch----HHh-
Confidence 689999999997 4 679999999999999999999999999999999999999999999999998642 122
Q ss_pred cceEEEEecCC-CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc--ccccCCCCCCChHHHHHHHHHHHHh
Q 016804 166 GLRIGLVFQSA-ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK--GVEDRLPSELSGGMKKRVALARSII 242 (382)
Q Consensus 166 ~~~Ig~V~Q~~-~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~--~~~~~~~~~LSGGqrQRVaIArAL~ 242 (382)
+.+||||||++ .+++.+||+||+.++.... ...++..+++.++++.+||. ++.++++.+|||||||||+|||||+
T Consensus 77 ~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~ 154 (266)
T 2yz2_A 77 RRNIGIAFQYPEDQFFAERVFDEVAFAVKNF--YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIV 154 (266)
T ss_dssp GGGEEEECSSGGGGCCCSSHHHHHHHTTTTT--CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHT
T ss_pred hhhEEEEeccchhhcCCCcHHHHHHHHHHhc--CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHH
Confidence 33699999996 4556789999999864321 22222345678899999999 9999999999999999999999999
Q ss_pred cCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccc
Q 016804 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHI 322 (382)
Q Consensus 243 ~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~ 322 (382)
. +|++|||||||+|||+.++..+.++|++++++| +|||+||||++++..+|||+
T Consensus 155 ~-------~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g----------~tii~vtHd~~~~~~~~d~v--------- 208 (266)
T 2yz2_A 155 H-------EPDILILDEPLVGLDREGKTDLLRIVEKWKTLG----------KTVILISHDIETVINHVDRV--------- 208 (266)
T ss_dssp T-------CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTT----------CEEEEECSCCTTTGGGCSEE---------
T ss_pred c-------CCCEEEEcCccccCCHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHhCCEE---------
Confidence 7 699999999999999999999999999997766 59999999999999999988
Q ss_pred hheehhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 323 DVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.|+++++.
T Consensus 209 ---------------------~~l~~G~i~~~g~~~~~~ 226 (266)
T 2yz2_A 209 ---------------------VVLEKGKKVFDGTRMEFL 226 (266)
T ss_dssp ---------------------EEEETTEEEEEEEHHHHH
T ss_pred ---------------------EEEECCEEEEeCCHHHHh
Confidence 999999999999887765
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-55 Score=416.69 Aligned_cols=220 Identities=26% Similarity=0.411 Sum_probs=187.0
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC--CCCCccEEEECCEECCCCCChhhhccce
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--LAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl--~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
+|+++||+|+|+++++|+||||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|+++... ......+..
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~-~~~~~~~~~ 81 (250)
T 2d2e_A 3 QLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILEL-SPDERARKG 81 (250)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTS-CHHHHHHTT
T ss_pred eEEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCC-CHHHHHhCc
Confidence 69999999999989999999999999999999999999999999999999 889999999999997643 222222335
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCC--CCHHHHHHHHHHHHHHcCC-cccccCCCCC-CChHHHHHHHHHHHHhcC
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSK--MRDEQISELVKENLAAVGL-KGVEDRLPSE-LSGGMKKRVALARSIIFD 244 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~--~~~~~~~~~v~~~L~~~gL-~~~~~~~~~~-LSGGqrQRVaIArAL~~~ 244 (382)
++||||++.+|+.+||+||+.++...... ....+..+++.++++.+|+ .+..++++.+ |||||||||+|||||++
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~- 160 (250)
T 2d2e_A 82 LFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVL- 160 (250)
T ss_dssp BCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHH-
T ss_pred EEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHc-
Confidence 89999999999999999999886532111 2334445678899999999 5889999999 99999999999999997
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHh-hchhccccccccch
Q 016804 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA-VDRLCLFQIFGHID 323 (382)
Q Consensus 245 ~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~-aDrv~~~~~~~~~~ 323 (382)
+|++|||||||+|||+.++..+.++|++++++| +|||+||||++++..+ |||+
T Consensus 161 ------~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g----------~tvi~vtHd~~~~~~~~~d~v---------- 214 (250)
T 2d2e_A 161 ------EPTYAVLDETDSGLDIDALKVVARGVNAMRGPN----------FGALVITHYQRILNYIQPDKV---------- 214 (250)
T ss_dssp ------CCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTT----------CEEEEECSSSGGGGTSCCSEE----------
T ss_pred ------CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcC----------CEEEEEecCHHHHHHhcCCEE----------
Confidence 599999999999999999999999999996555 5999999999999887 5877
Q ss_pred heehhccCCCCcccccccEEEEEeCCeEEEEeccc
Q 016804 324 VVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTH 358 (382)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~ 358 (382)
++|++|++++.|+++
T Consensus 215 --------------------~~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 215 --------------------HVMMDGRVVATGGPE 229 (250)
T ss_dssp --------------------EEEETTEEEEEESHH
T ss_pred --------------------EEEECCEEEEEeCHH
Confidence 999999999999765
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-54 Score=416.73 Aligned_cols=224 Identities=29% Similarity=0.428 Sum_probs=191.5
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC--CCCCccEEEECCEECCCCCChhhhcc
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--LAPDKGEVYIRGRKRAGLISDEEISG 166 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl--~~p~sG~I~i~G~~i~~~~~~~~~~~ 166 (382)
.++|+++||+|+|+++++|+||||+|++||+++|+||||||||||+|+|+|+ ++|++|+|+++|+++... ......+
T Consensus 18 ~~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~-~~~~~~~ 96 (267)
T 2zu0_C 18 SHMLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLAL-SPEDRAG 96 (267)
T ss_dssp --CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGS-CHHHHHH
T ss_pred CceEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcC-CHHHHhh
Confidence 4579999999999989999999999999999999999999999999999999 478999999999987543 2222222
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhHhh----cC--CCCHHHHHHHHHHHHHHcCCc-ccccCCCC-CCChHHHHHHHHH
Q 016804 167 LRIGLVFQSAALFDSLTVRENVGFLLYE----NS--KMRDEQISELVKENLAAVGLK-GVEDRLPS-ELSGGMKKRVALA 238 (382)
Q Consensus 167 ~~Ig~V~Q~~~l~~~lTV~eni~~~~~~----~~--~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~-~LSGGqrQRVaIA 238 (382)
..|+||||++.+|+.+||.+|+.+.... .. ..+.++..+++.++++.+||. ...++++. +|||||||||+||
T Consensus 97 ~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iA 176 (267)
T 2zu0_C 97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDIL 176 (267)
T ss_dssp HTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHH
T ss_pred CCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHH
Confidence 3499999999999999999999875411 11 123445567788999999996 57888887 5999999999999
Q ss_pred HHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHh-hchhcccc
Q 016804 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA-VDRLCLFQ 317 (382)
Q Consensus 239 rAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~-aDrv~~~~ 317 (382)
|||+. +|+||||||||+|||+.++..++++|++++++| +|||++|||++++..+ |||+
T Consensus 177 raL~~-------~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g----------~tviivtHd~~~~~~~~~d~v---- 235 (267)
T 2zu0_C 177 QMAVL-------EPELCILDESDSGLDIDALKVVADGVNSLRDGK----------RSFIIVTHYQRILDYIKPDYV---- 235 (267)
T ss_dssp HHHHH-------CCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSS----------CEEEEECSSGGGGGTSCCSEE----
T ss_pred HHHHh-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC----------CEEEEEeeCHHHHHhhcCCEE----
Confidence 99997 699999999999999999999999999986555 5999999999998876 8877
Q ss_pred ccccchheehhccCCCCcccccccEEEEEeCCeEEEEeccccc
Q 016804 318 IFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEF 360 (382)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~ 360 (382)
++|++|++++.|+++++
T Consensus 236 --------------------------~~l~~G~i~~~g~~~~~ 252 (267)
T 2zu0_C 236 --------------------------HVLYQGRIVKSGDFTLV 252 (267)
T ss_dssp --------------------------EEEETTEEEEEECTTHH
T ss_pred --------------------------EEEECCEEEEEcCHHHH
Confidence 99999999999987765
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-54 Score=407.73 Aligned_cols=210 Identities=22% Similarity=0.339 Sum_probs=187.9
Q ss_pred ceEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 90 VLIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 90 ~~I~~~nvs~~yg-~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
++|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+ +.+
T Consensus 3 ~~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~---------------~~~ 67 (253)
T 2nq2_C 3 KALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV---------------YQS 67 (253)
T ss_dssp EEEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE---------------CSC
T ss_pred ceEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE---------------ecc
Confidence 3799999999998 888999999999999999999999999999999999999999999982 125
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCC---CCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCC
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSK---MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~---~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~ 245 (382)
||||||++.+++.+||+||+.++.....+ ....+..+++.++++.+||.++.++++.+|||||||||+|||||+.
T Consensus 68 i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~-- 145 (253)
T 2nq2_C 68 IGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIAS-- 145 (253)
T ss_dssp EEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHT--
T ss_pred EEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHc--
Confidence 99999999999889999999987532211 1223445678899999999999999999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchh
Q 016804 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDV 324 (382)
Q Consensus 246 ~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~ 324 (382)
+|++|||||||+|||+.++..+.++|++++++ | .|+|++|||++++.++|||+
T Consensus 146 -----~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g----------~tvi~vtHd~~~~~~~~d~v----------- 199 (253)
T 2nq2_C 146 -----ECKLILLDEPTSALDLANQDIVLSLLIDLAQSQN----------MTVVFTTHQPNQVVAIANKT----------- 199 (253)
T ss_dssp -----TCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSC----------CEEEEEESCHHHHHHHCSEE-----------
T ss_pred -----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEecCHHHHHHhCCEE-----------
Confidence 69999999999999999999999999999876 5 59999999999999999988
Q ss_pred eehhccCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 325 VIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|+ ++.|+++++..
T Consensus 200 -------------------~~l~~G~-~~~g~~~~~~~ 217 (253)
T 2nq2_C 200 -------------------LLLNKQN-FKFGETRNILT 217 (253)
T ss_dssp -------------------EEEETTE-EEEEEHHHHCC
T ss_pred -------------------EEEeCCe-EecCCHHHHhC
Confidence 9999999 99998888753
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-54 Score=415.57 Aligned_cols=227 Identities=25% Similarity=0.422 Sum_probs=190.1
Q ss_pred ceEEEEeEEEEeCC---eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhcc
Q 016804 90 VLIDCRNVYKSFGE---KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (382)
Q Consensus 90 ~~I~~~nvs~~yg~---~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~ 166 (382)
.+|+++||+|+|++ +++|++|||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++... ..... +
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~-~~~~~-~ 92 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQY-DHHYL-H 92 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGB-CHHHH-H
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccC-CHHHH-h
Confidence 47999999999986 7899999999999999999999999999999999999999999999999987542 22222 2
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHH-----HHHHHHHHHHc--CCcccccCCCCCCChHHHHHHHHHH
Q 016804 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQI-----SELVKENLAAV--GLKGVEDRLPSELSGGMKKRVALAR 239 (382)
Q Consensus 167 ~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~-----~~~v~~~L~~~--gL~~~~~~~~~~LSGGqrQRVaIAr 239 (382)
.+||||||++.+|+ .||+||+.++.... ...++. ...+.++++.+ |+....++++.+|||||||||+|||
T Consensus 93 ~~i~~v~Q~~~l~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAr 169 (271)
T 2ixe_A 93 TQVAAVGQEPLLFG-RSFRENIAYGLTRT--PTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALAR 169 (271)
T ss_dssp HHEEEECSSCCCCS-SBHHHHHHTTCSSC--CCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHH
T ss_pred ccEEEEecCCcccc-ccHHHHHhhhcccC--ChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHH
Confidence 36999999999997 59999999864211 111211 12345677888 7888889999999999999999999
Q ss_pred HHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccc
Q 016804 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQI 318 (382)
Q Consensus 240 AL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~ 318 (382)
||+. +|+||||||||+|||+.++..++++|+++.++ | +|+|+||||++++.. |||+
T Consensus 170 aL~~-------~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g----------~tviivtHd~~~~~~-~d~v----- 226 (271)
T 2ixe_A 170 ALIR-------KPRLLILDNATSALDAGNQLRVQRLLYESPEWAS----------RTVLLITQQLSLAER-AHHI----- 226 (271)
T ss_dssp HHTT-------CCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTT----------SEEEEECSCHHHHTT-CSEE-----
T ss_pred HHhc-------CCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcC----------CEEEEEeCCHHHHHh-CCEE-----
Confidence 9997 69999999999999999999999999998653 4 599999999999864 8877
Q ss_pred cccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHH
Q 016804 319 FGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQ 369 (382)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~ 369 (382)
++|++|+|++.|+++++......+.+
T Consensus 227 -------------------------~~l~~G~i~~~g~~~~l~~~~~~~~~ 252 (271)
T 2ixe_A 227 -------------------------LFLKEGSVCEQGTHLQLMERGGCYRS 252 (271)
T ss_dssp -------------------------EEEETTEEEEEECHHHHHHHTSHHHH
T ss_pred -------------------------EEEECCEEEEECCHHHHHhCcHHHHH
Confidence 99999999999988887654444543
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-54 Score=407.51 Aligned_cols=214 Identities=31% Similarity=0.529 Sum_probs=182.5
Q ss_pred eEEEEeEEEEe--CCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 91 LIDCRNVYKSF--GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 91 ~I~~~nvs~~y--g~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
-|+++||+|+| +++++|++|||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.... .... +.+
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~-~~~~-~~~ 84 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALAD-PNWL-RRQ 84 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSC-HHHH-HHH
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCC-HHHH-Hhc
Confidence 38999999999 4678999999999999999999999999999999999999999999999999976432 2222 236
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCC-----------CCCCChHHHHHHHH
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL-----------PSELSGGMKKRVAL 237 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~-----------~~~LSGGqrQRVaI 237 (382)
||||||++.+|+ .||+||+.++. .... .+++.++++.+++.++.+++ +.+|||||||||+|
T Consensus 85 i~~v~Q~~~l~~-~tv~enl~~~~---~~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~i 156 (247)
T 2ff7_A 85 VGVVLQDNVLLN-RSIIDNISLAN---PGMS----VEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAI 156 (247)
T ss_dssp EEEECSSCCCTT-SBHHHHHTTTC---TTCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHH
T ss_pred EEEEeCCCcccc-ccHHHHHhccC---CCCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHH
Confidence 999999999997 59999998753 1122 23456677888876655544 58999999999999
Q ss_pred HHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccc
Q 016804 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQ 317 (382)
Q Consensus 238 ArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~ 317 (382)
||||++ +|++|||||||++||+.++..++++|+++. +| +|+|+||||++.+. .|||+
T Consensus 157 AraL~~-------~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g----------~tviivtH~~~~~~-~~d~v---- 213 (247)
T 2ff7_A 157 ARALVN-------NPKILIFDEATSALDYESEHVIMRNMHKIC-KG----------RTVIIIAHRLSTVK-NADRI---- 213 (247)
T ss_dssp HHHHTT-------CCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TT----------SEEEEECSSGGGGT-TSSEE----
T ss_pred HHHHhc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CC----------CEEEEEeCCHHHHH-hCCEE----
Confidence 999997 699999999999999999999999999995 45 59999999999886 48877
Q ss_pred ccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccC
Q 016804 318 IFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSS 363 (382)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~ 363 (382)
++|++|++++.|+++++...
T Consensus 214 --------------------------~~l~~G~i~~~g~~~~l~~~ 233 (247)
T 2ff7_A 214 --------------------------IVMEKGKIVEQGKHKELLSE 233 (247)
T ss_dssp --------------------------EEEETTEEEEEECHHHHHTS
T ss_pred --------------------------EEEECCEEEEECCHHHHHhC
Confidence 99999999999988887644
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-54 Score=420.29 Aligned_cols=215 Identities=29% Similarity=0.479 Sum_probs=183.3
Q ss_pred eEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 91 LIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 91 ~I~~~nvs~~yg-~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
.|+++||+|+|+ ++++|+||||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++.... .... +.+|
T Consensus 53 ~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~-~~~~-r~~i 130 (306)
T 3nh6_A 53 RIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVT-QASL-RSHI 130 (306)
T ss_dssp CEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBC-HHHH-HHTE
T ss_pred eEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCC-HHHH-hcce
Confidence 499999999995 578999999999999999999999999999999999999999999999999987643 2222 2369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccc-----------cCCCCCCChHHHHHHHHH
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVE-----------DRLPSELSGGMKKRVALA 238 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~-----------~~~~~~LSGGqrQRVaIA 238 (382)
|||||++.+|+ .||+|||.++... ... +++.++++.+++.++. .+.+.+|||||||||+||
T Consensus 131 ~~v~Q~~~lf~-~Tv~eNi~~~~~~---~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiA 202 (306)
T 3nh6_A 131 GVVPQDTVLFN-DTIADNIRYGRVT---AGN----DEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIA 202 (306)
T ss_dssp EEECSSCCCCS-EEHHHHHHTTSTT---CCH----HHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHH
T ss_pred EEEecCCccCc-ccHHHHHHhhccc---CCH----HHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHH
Confidence 99999999996 5999999986421 222 2345566666665544 444579999999999999
Q ss_pred HHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccc
Q 016804 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQI 318 (382)
Q Consensus 239 rAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~ 318 (382)
|||++ +|+||||||||++||+.++..+++.|+++.+. +|+|+||||++.+.. ||||
T Consensus 203 RAL~~-------~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~-----------~Tvi~itH~l~~~~~-aD~i----- 258 (306)
T 3nh6_A 203 RTILK-------APGIILLDEATSALDTSNERAIQASLAKVCAN-----------RTTIVVAHRLSTVVN-ADQI----- 258 (306)
T ss_dssp HHHHH-------CCSEEEEECCSSCCCHHHHHHHHHHHHHHHTT-----------SEEEEECCSHHHHHT-CSEE-----
T ss_pred HHHHh-------CCCEEEEECCcccCCHHHHHHHHHHHHHHcCC-----------CEEEEEEcChHHHHc-CCEE-----
Confidence 99998 59999999999999999999999999998653 499999999999986 8877
Q ss_pred cccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCC
Q 016804 319 FGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSS 364 (382)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~ 364 (382)
++|++|+|++.|+++++....
T Consensus 259 -------------------------~vl~~G~iv~~G~~~el~~~~ 279 (306)
T 3nh6_A 259 -------------------------LVIKDGCIVERGRHEALLSRG 279 (306)
T ss_dssp -------------------------EEEETTEEEEEECHHHHHHHT
T ss_pred -------------------------EEEECCEEEEECCHHHHHhcC
Confidence 999999999999888877543
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-53 Score=405.16 Aligned_cols=213 Identities=25% Similarity=0.392 Sum_probs=188.6
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
++|+++||+|+ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|+ |+|.++|+++.... .... +.+|
T Consensus 3 ~~l~~~~l~~~----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~-~~~~-~~~i 75 (249)
T 2qi9_C 3 IVMQLQDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWS-ATKL-ALHR 75 (249)
T ss_dssp EEEEEEEEEET----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSC-HHHH-HHHE
T ss_pred cEEEEEceEEE----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCC-HHHH-hceE
Confidence 37999999986 6999999999999999999999999999999999999999 99999999875432 2222 2359
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
|||||++.+|+.+||+||+.++... ... .+++.++++.+||.++.++++.+|||||||||+|||||+.
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~--~~~----~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~------ 143 (249)
T 2qi9_C 76 AYLSQQQTPPFATPVWHYLTLHQHD--KTR----TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQ------ 143 (249)
T ss_dssp EEECSCCCCCTTCBHHHHHHTTCSS--TTC----HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHH------
T ss_pred EEECCCCccCCCCcHHHHHHHhhcc--CCc----HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHc------
Confidence 9999999999989999999885311 112 4567889999999999999999999999999999999998
Q ss_pred CCCc-------EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccc
Q 016804 250 VEPE-------VLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHI 322 (382)
Q Consensus 250 ~~P~-------iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~ 322 (382)
+|+ +|||||||+|||+.++..+.++|+++.++| +|+|++|||++++.++|||+
T Consensus 144 -~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g----------~tviivtHd~~~~~~~~d~v--------- 203 (249)
T 2qi9_C 144 -ITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQG----------LAIVMSSHDLNHTLRHAHRA--------- 203 (249)
T ss_dssp -HCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTT----------CEEEEECSCHHHHHHHCSEE---------
T ss_pred -CCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHhCCEE---------
Confidence 588 999999999999999999999999997766 59999999999999999988
Q ss_pred hheehhccCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 323 DVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|++++.|+++++..
T Consensus 204 ---------------------~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 204 ---------------------WLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp ---------------------EEEETTEEEEEEEHHHHSC
T ss_pred ---------------------EEEECCEEEEeCCHHHHhc
Confidence 9999999999998888764
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-54 Score=404.47 Aligned_cols=225 Identities=29% Similarity=0.515 Sum_probs=188.9
Q ss_pred eEEEEeEEEEe-CCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 91 LIDCRNVYKSF-GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 91 ~I~~~nvs~~y-g~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
||+++||+|+| +++++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++....... .+.+|
T Consensus 1 ml~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~--~~~~i 78 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLEN--WRSQI 78 (243)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSC--CTTTC
T ss_pred CEEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHH--HHhhE
Confidence 58999999999 6678999999999999999999999999999999999999999999999999976432211 23369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCC-----------CCCCChHHHHHHHHH
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL-----------PSELSGGMKKRVALA 238 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~-----------~~~LSGGqrQRVaIA 238 (382)
|||||++.+|+ .||+||+.+++. .... .+++.++++.+++.++.+++ +.+|||||||||+||
T Consensus 79 ~~v~q~~~l~~-~tv~enl~~~~~--~~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lA 151 (243)
T 1mv5_A 79 GFVSQDSAIMA-GTIRENLTYGLE--GDYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIA 151 (243)
T ss_dssp CEECCSSCCCC-EEHHHHTTSCTT--SCSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHH
T ss_pred EEEcCCCcccc-ccHHHHHhhhcc--CCCC----HHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHH
Confidence 99999999998 599999988531 1122 23467788899987766554 579999999999999
Q ss_pred HHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccc
Q 016804 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQI 318 (382)
Q Consensus 239 rAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~ 318 (382)
|||++ +|++|||||||+|||+.++..+.+.|+++. ++ +|+|++|||++.+. .|||+
T Consensus 152 ral~~-------~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~----------~tvi~vtH~~~~~~-~~d~v----- 207 (243)
T 1mv5_A 152 RAFLR-------NPKILMLDEATASLDSESESMVQKALDSLM-KG----------RTTLVIAHRLSTIV-DADKI----- 207 (243)
T ss_dssp HHHHH-------CCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TT----------SEEEEECCSHHHHH-HCSEE-----
T ss_pred HHHhc-------CCCEEEEECCcccCCHHHHHHHHHHHHHhc-CC----------CEEEEEeCChHHHH-hCCEE-----
Confidence 99997 599999999999999999999999999997 55 59999999999886 58877
Q ss_pred cccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHHcC
Q 016804 319 FGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFASG 374 (382)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 374 (382)
++|++|++++.|+++++... ......++..
T Consensus 208 -------------------------~~l~~G~i~~~g~~~~~~~~-~~~~~~~~~~ 237 (243)
T 1mv5_A 208 -------------------------YFIEKGQITGSGKHNELVAT-HPLYAKYVSE 237 (243)
T ss_dssp -------------------------EEEETTEECCCSCHHHHHHH-CHHHHHHHHC
T ss_pred -------------------------EEEECCEEEEeCCHHHHHhc-cHHHHHHHHh
Confidence 99999999999988887643 3444555543
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-53 Score=397.19 Aligned_cols=200 Identities=20% Similarity=0.342 Sum_probs=177.5
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
..+|+++||+++|++ ++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++. . .+.+
T Consensus 8 ~~~l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~--~~~~ 79 (214)
T 1sgw_A 8 GSKLEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----K--VKGK 79 (214)
T ss_dssp -CEEEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----G--GGGG
T ss_pred CceEEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----h--hcCc
Confidence 457999999999998 9999999999999999999999999999999999999999999999999863 1 1336
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~ 248 (382)
||||||++.+|+.+||+||+.++..... .. .+ .+++.++++.+|+++. ++++.+|||||||||+|||||+.
T Consensus 80 i~~v~q~~~~~~~~tv~enl~~~~~~~~-~~-~~-~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~----- 150 (214)
T 1sgw_A 80 IFFLPEEIIVPRKISVEDYLKAVASLYG-VK-VN-KNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLV----- 150 (214)
T ss_dssp EEEECSSCCCCTTSBHHHHHHHHHHHTT-CC-CC-HHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTS-----
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHhcC-Cc-hH-HHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHh-----
Confidence 9999999999999999999998653222 11 12 4567889999999988 99999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccc
Q 016804 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQ 317 (382)
Q Consensus 249 a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~ 317 (382)
+|++|||||||++||+.++..+.++|+++.++| +|||++|||++++..+|||++++.
T Consensus 151 --~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g----------~tiiivtHd~~~~~~~~d~v~~~~ 207 (214)
T 1sgw_A 151 --NAEIYVLDDPVVAIDEDSKHKVLKSILEILKEK----------GIVIISSREELSYCDVNENLHKYS 207 (214)
T ss_dssp --CCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHH----------SEEEEEESSCCTTSSEEEEGGGGB
T ss_pred --CCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHhCCEEEEeC
Confidence 699999999999999999999999999998665 599999999999999999995543
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-51 Score=433.68 Aligned_cols=276 Identities=22% Similarity=0.359 Sum_probs=220.6
Q ss_pred cccchhhHhHhhHHhhhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCC
Q 016804 5 SSSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEP 84 (382)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (382)
+......+...+..++.++..++... ..........+|+.+....|+.... . . . +
T Consensus 280 t~g~l~~~~~~~~~~~~pl~~l~~~~-----~~~~~~~~a~~ri~~~l~~~~~~~~-~--------~---------~--~ 334 (582)
T 3b5x_A 280 TPGTFTVVFSAMFGLMRPLKALTSVT-----SEFQRGMAACQTLFGLMDLETERDN-G--------K---------Y--E 334 (582)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCCcCCC-C--------C---------C--C
Confidence 33445555556666677777776666 6677788888999888876642110 0 0 0 0
Q ss_pred CCCCcceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChh
Q 016804 85 EDDGDVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE 162 (382)
Q Consensus 85 ~~~~~~~I~~~nvs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~ 162 (382)
......+|+++||+|+|++ +++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.... ..
T Consensus 335 ~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~-~~ 413 (582)
T 3b5x_A 335 AERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYK-LT 413 (582)
T ss_pred CCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCC-HH
Confidence 0111235999999999974 67999999999999999999999999999999999999999999999999986542 22
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChHH
Q 016804 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGM 231 (382)
Q Consensus 163 ~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGGq 231 (382)
.. +.+||||||++.+|+. ||+||+.++.. ...+ ++++.++++.++++++.++.| .+|||||
T Consensus 414 ~~-~~~i~~v~Q~~~l~~~-tv~eni~~~~~--~~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq 485 (582)
T 3b5x_A 414 NL-RRHFALVSQNVHLFND-TIANNIAYAAE--GEYT----REQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQ 485 (582)
T ss_pred HH-hcCeEEEcCCCccccc-cHHHHHhccCC--CCCC----HHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHH
Confidence 22 3369999999999984 99999988531 1122 345678888888877766654 7999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhc
Q 016804 232 KKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVD 311 (382)
Q Consensus 232 rQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aD 311 (382)
|||++|||||++ +|++|||||||++||+.++..+.+.|+++.+ | +|+|+||||++.+. .||
T Consensus 486 ~qr~~iAral~~-------~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~----------~tvi~itH~~~~~~-~~d 546 (582)
T 3b5x_A 486 RQRVAIARALLR-------DAPVLILDEATSALDTESERAIQAALDELQK-N----------KTVLVIAHRLSTIE-QAD 546 (582)
T ss_pred HHHHHHHHHHHc-------CCCEEEEECccccCCHHHHHHHHHHHHHHcC-C----------CEEEEEecCHHHHH-hCC
Confidence 999999999997 5999999999999999999999999999864 5 59999999999986 588
Q ss_pred hhccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccC
Q 016804 312 RLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSS 363 (382)
Q Consensus 312 rv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~ 363 (382)
|+ ++|++|+++++|+++++...
T Consensus 547 ~i------------------------------~~l~~G~i~~~g~~~~l~~~ 568 (582)
T 3b5x_A 547 EI------------------------------LVVDEGEIIERGRHADLLAQ 568 (582)
T ss_pred EE------------------------------EEEECCEEEEECCHHHHHhC
Confidence 77 99999999999988887654
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-52 Score=398.08 Aligned_cols=219 Identities=26% Similarity=0.460 Sum_probs=182.8
Q ss_pred ceEEEEeEEEEeCC---eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhcc
Q 016804 90 VLIDCRNVYKSFGE---KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (382)
Q Consensus 90 ~~I~~~nvs~~yg~---~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~ 166 (382)
.+|+++||+|+|++ +++|+||||+|++||+++|+||||||||||+|+|+|+++| +|+|+++|+++... ..... +
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~-~~~~~-~ 92 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKY-NRNSI-R 92 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGB-CHHHH-H
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhc-CHHHH-h
Confidence 46999999999976 4699999999999999999999999999999999999987 89999999987542 22222 3
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCccc-----------ccCCCCCCChHHHHHH
Q 016804 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGV-----------EDRLPSELSGGMKKRV 235 (382)
Q Consensus 167 ~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~-----------~~~~~~~LSGGqrQRV 235 (382)
.+||||||++.+|+ .||+||+.++.. ... .+++.++++.+++.++ .++++.+|||||||||
T Consensus 93 ~~i~~v~Q~~~l~~-~tv~enl~~~~~---~~~----~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv 164 (260)
T 2ghi_A 93 SIIGIVPQDTILFN-ETIKYNILYGKL---DAT----DEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRI 164 (260)
T ss_dssp TTEEEECSSCCCCS-EEHHHHHHTTCT---TCC----HHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHH
T ss_pred ccEEEEcCCCcccc-cCHHHHHhccCC---CCC----HHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHH
Confidence 36999999999997 599999988531 122 2345667777777543 2467789999999999
Q ss_pred HHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcc
Q 016804 236 ALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCL 315 (382)
Q Consensus 236 aIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~ 315 (382)
+|||||+. +|+||||||||++||+.++..+++.|+++.+ + +|+|+||||++.+. .|||+
T Consensus 165 ~lAraL~~-------~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~----------~tviivtH~~~~~~-~~d~i-- 223 (260)
T 2ghi_A 165 AIARCLLK-------DPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-N----------RTLIIIAHRLSTIS-SAESI-- 223 (260)
T ss_dssp HHHHHHHH-------CCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-T----------SEEEEECSSGGGST-TCSEE--
T ss_pred HHHHHHHc-------CCCEEEEECccccCCHHHHHHHHHHHHHhcC-C----------CEEEEEcCCHHHHH-hCCEE--
Confidence 99999997 5999999999999999999999999999954 4 59999999999875 48877
Q ss_pred ccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHH
Q 016804 316 FQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIV 368 (382)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~ 368 (382)
++|++|++++.|+++++......+.
T Consensus 224 ----------------------------~~l~~G~i~~~g~~~~l~~~~~~~~ 248 (260)
T 2ghi_A 224 ----------------------------ILLNKGKIVEKGTHKDLLKLNGEYA 248 (260)
T ss_dssp ----------------------------EEEETTEEEEEECHHHHHHHTSHHH
T ss_pred ----------------------------EEEECCEEEEECCHHHHHhcChHHH
Confidence 9999999999998888765444443
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-51 Score=433.44 Aligned_cols=275 Identities=22% Similarity=0.350 Sum_probs=219.6
Q ss_pred ccchhhHhHhhHHhhhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCC
Q 016804 6 SSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPE 85 (382)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (382)
......+...+..++.++..+.... ..........+|+.+....|+.... . . . +.
T Consensus 281 ~g~l~~~~~~~~~~~~pl~~l~~~~-----~~~~~~~~a~~ri~~~l~~~~~~~~-~--------~---------~--~~ 335 (582)
T 3b60_A 281 AGTITVVFSSMIALMRPLKSLTNVN-----AQFQRGMAACQTLFAILDSEQEKDE-G--------K---------R--VI 335 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHSCCSCCC-C--------C---------B--CC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCCCccC-C--------C---------C--CC
Confidence 3444555556666777887776666 6677788888999988877643210 0 0 0 00
Q ss_pred CCCcceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhh
Q 016804 86 DDGDVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE 163 (382)
Q Consensus 86 ~~~~~~I~~~nvs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~ 163 (382)
.....+|+++||+|+|++ +++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.... ...
T Consensus 336 ~~~~~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~-~~~ 414 (582)
T 3b60_A 336 DRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYT-LAS 414 (582)
T ss_dssp SCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBC-HHH
T ss_pred CCCCCcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccC-HHH
Confidence 011235999999999973 67999999999999999999999999999999999999999999999999986542 222
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCC-----------CCCCChHHH
Q 016804 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL-----------PSELSGGMK 232 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~-----------~~~LSGGqr 232 (382)
. +.+||||||++.+|+. ||+||+.++.. ...+ ++++.++++.++++++.++. +.+||||||
T Consensus 415 ~-~~~i~~v~Q~~~l~~~-tv~eni~~~~~--~~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~ 486 (582)
T 3b60_A 415 L-RNQVALVSQNVHLFND-TVANNIAYART--EEYS----REQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQR 486 (582)
T ss_dssp H-HHTEEEECSSCCCCSS-BHHHHHHTTTT--SCCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHH
T ss_pred H-HhhCeEEccCCcCCCC-CHHHHHhccCC--CCCC----HHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHH
Confidence 2 2369999999999985 99999998531 1122 24467788888887666554 479999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhch
Q 016804 233 KRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDR 312 (382)
Q Consensus 233 QRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDr 312 (382)
||++|||||++ +|++|||||||++||+.++..+.+.|+++.+ | +|+|+||||++.+. .|||
T Consensus 487 qrl~iAral~~-------~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~----------~tvi~itH~~~~~~-~~d~ 547 (582)
T 3b60_A 487 QRIAIARALLR-------DSPILILDEATSALDTESERAIQAALDELQK-N----------RTSLVIAHRLSTIE-QADE 547 (582)
T ss_dssp HHHHHHHHHHH-------CCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-T----------SEEEEECSCGGGTT-TCSE
T ss_pred HHHHHHHHHHh-------CCCEEEEECccccCCHHHHHHHHHHHHHHhC-C----------CEEEEEeccHHHHH-hCCE
Confidence 99999999998 5999999999999999999999999999965 5 59999999999886 5887
Q ss_pred hccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccC
Q 016804 313 LCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSS 363 (382)
Q Consensus 313 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~ 363 (382)
| ++|++|++++.|+++++...
T Consensus 548 i------------------------------~~l~~G~i~~~g~~~~l~~~ 568 (582)
T 3b60_A 548 I------------------------------VVVEDGIIVERGTHSELLAQ 568 (582)
T ss_dssp E------------------------------EEEETTEEEEEECHHHHHHH
T ss_pred E------------------------------EEEECCEEEEecCHHHHHHc
Confidence 7 99999999999988887643
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-51 Score=433.30 Aligned_cols=276 Identities=25% Similarity=0.358 Sum_probs=215.2
Q ss_pred chhhHhHhhHHhhhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCC
Q 016804 8 GSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDD 87 (382)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (382)
....+......++.++..+.+.. ..........+|+.+....|+........ .+...
T Consensus 279 ~l~~~~~~~~~~~~~l~~l~~~~-----~~~~~~~~s~~ri~~~l~~~~~~~~~~~~------------------~~~~~ 335 (578)
T 4a82_A 279 TLAAFVGYLELLFGPLRRLVASF-----TTLTQSFASMDRVFQLIDEDYDIKNGVGA------------------QPIEI 335 (578)
T ss_dssp HHHHHHHTHHHHTTHHHHHHHHH-----HHHHHHHHHHHHHHHHHTCCCSSCCCTTC------------------CCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCCcccCCCCc------------------cccCC
Confidence 33344444445566666655555 56677788889999888776432111000 00011
Q ss_pred CcceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhc
Q 016804 88 GDVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165 (382)
Q Consensus 88 ~~~~I~~~nvs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~ 165 (382)
....|+++||+|+|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.... ....
T Consensus 336 ~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~-~~~~- 413 (578)
T 4a82_A 336 KQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFL-TGSL- 413 (578)
T ss_dssp CSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSC-HHHH-
T ss_pred CCCeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCC-HHHH-
Confidence 1234999999999964 57999999999999999999999999999999999999999999999999986543 2222
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChHHHHH
Q 016804 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKR 234 (382)
Q Consensus 166 ~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGGqrQR 234 (382)
+.+||||||++.+|+. ||+||+.++.. ... ++++.++++.+++.++.++.| .+||||||||
T Consensus 414 r~~i~~v~Q~~~l~~~-tv~eni~~~~~---~~~----~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qr 485 (578)
T 4a82_A 414 RNQIGLVQQDNILFSD-TVKENILLGRP---TAT----DEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQR 485 (578)
T ss_dssp HHTEEEECSSCCCCSS-BHHHHHGGGCS---SCC----HHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHH
T ss_pred hhheEEEeCCCccCcc-cHHHHHhcCCC---CCC----HHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHH
Confidence 3369999999999985 99999988531 122 234667788888776666555 5899999999
Q ss_pred HHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhc
Q 016804 235 VALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLC 314 (382)
Q Consensus 235 VaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~ 314 (382)
++|||||++ +|++|||||||++||+.++..+.+.++++.+ + +|+|+||||++.+.. ||||
T Consensus 486 v~lAral~~-------~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~----------~t~i~itH~l~~~~~-~d~i- 545 (578)
T 4a82_A 486 LSIARIFLN-------NPPILILDEATSALDLESESIIQEALDVLSK-D----------RTTLIVAHRLSTITH-ADKI- 545 (578)
T ss_dssp HHHHHHHHH-------CCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-T----------SEEEEECSSGGGTTT-CSEE-
T ss_pred HHHHHHHHc-------CCCEEEEECccccCCHHHHHHHHHHHHHHcC-C----------CEEEEEecCHHHHHc-CCEE-
Confidence 999999998 5999999999999999999999999999854 3 499999999999864 8877
Q ss_pred cccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCC
Q 016804 315 LFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSN 365 (382)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~ 365 (382)
++|++|+|+++|+++|+.....
T Consensus 546 -----------------------------~~l~~G~i~~~g~~~el~~~~~ 567 (578)
T 4a82_A 546 -----------------------------VVIENGHIVETGTHRELIAKQG 567 (578)
T ss_dssp -----------------------------EEEETTEEEEEECHHHHHHTTS
T ss_pred -----------------------------EEEECCEEEEECCHHHHHhCCc
Confidence 9999999999998888775443
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-52 Score=398.44 Aligned_cols=207 Identities=25% Similarity=0.372 Sum_probs=183.7
Q ss_pred eEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhcc
Q 016804 91 LIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (382)
Q Consensus 91 ~I~~~nvs~~yg~----~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~ 166 (382)
||+++||+++|++ +++|+++||+|+ ||+++|+||||||||||+|+|+|++ |++|+|.++|+++... . . +
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~---~-~-~ 73 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI---R-N-Y 73 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC---S-C-C
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch---H-H-h
Confidence 5899999999987 789999999999 9999999999999999999999999 9999999999987532 1 1 3
Q ss_pred ceEE-EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHHHHHHhcC
Q 016804 167 LRIG-LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSIIFD 244 (382)
Q Consensus 167 ~~Ig-~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaIArAL~~~ 244 (382)
.+|| ||||++.+ .+||+||+.++.... ... .+++.++++.+||. +..++++.+|||||||||+|||||+.
T Consensus 74 ~~i~~~v~Q~~~l--~~tv~enl~~~~~~~-~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~- 145 (263)
T 2pjz_A 74 IRYSTNLPEAYEI--GVTVNDIVYLYEELK-GLD----RDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALAS- 145 (263)
T ss_dssp TTEEECCGGGSCT--TSBHHHHHHHHHHHT-CCC----HHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHT-
T ss_pred hheEEEeCCCCcc--CCcHHHHHHHhhhhc-chH----HHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHh-
Confidence 3699 99999987 689999999865322 122 34578899999999 99999999999999999999999997
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhc-hhccccccccch
Q 016804 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVD-RLCLFQIFGHID 323 (382)
Q Consensus 245 ~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aD-rv~~~~~~~~~~ 323 (382)
+|++|||||||++||+.++..+.+.|+++. .|+|++|||++++.++|| |+
T Consensus 146 ------~p~lllLDEPts~LD~~~~~~l~~~L~~~~-------------~tviivtHd~~~~~~~~d~~i---------- 196 (263)
T 2pjz_A 146 ------QPEIVGLDEPFENVDAARRHVISRYIKEYG-------------KEGILVTHELDMLNLYKEYKA---------- 196 (263)
T ss_dssp ------CCSEEEEECTTTTCCHHHHHHHHHHHHHSC-------------SEEEEEESCGGGGGGCTTSEE----------
T ss_pred ------CCCEEEEECCccccCHHHHHHHHHHHHHhc-------------CcEEEEEcCHHHHHHhcCceE----------
Confidence 699999999999999999999999998763 289999999999999999 88
Q ss_pred heehhccCCCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 324 VVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|++++.|+++++.
T Consensus 197 --------------------~~l~~G~i~~~g~~~~l~ 214 (263)
T 2pjz_A 197 --------------------YFLVGNRLQGPISVSELL 214 (263)
T ss_dssp --------------------EEEETTEEEEEEEHHHHH
T ss_pred --------------------EEEECCEEEEecCHHHHH
Confidence 999999999999887765
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-52 Score=422.04 Aligned_cols=223 Identities=26% Similarity=0.438 Sum_probs=193.3
Q ss_pred ceEEEEeEEEEe--CCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccc
Q 016804 90 VLIDCRNVYKSF--GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (382)
Q Consensus 90 ~~I~~~nvs~~y--g~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~ 167 (382)
..|+++||+|+| +++++|+||||+|++||+++|+||||||||||||+|+|+++ ++|+|+++|+++.... .... ++
T Consensus 18 ~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~-~~~~-rr 94 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSIT-LEQW-RK 94 (390)
T ss_dssp CCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSC-HHHH-HH
T ss_pred CeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCC-hHHH-hC
Confidence 359999999999 66789999999999999999999999999999999999998 9999999999986542 2222 23
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCC-----------CChHHHHHHH
Q 016804 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSE-----------LSGGMKKRVA 236 (382)
Q Consensus 168 ~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~-----------LSGGqrQRVa 236 (382)
+||||||++.+|+ +||+||+.+.. ... .+++.++++.++|.++.+++|.+ |||||||||+
T Consensus 95 ~ig~v~Q~~~lf~-~tv~enl~~~~----~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRva 165 (390)
T 3gd7_A 95 AFGVIPQKVFIFS-GTFRKNLDPNA----AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMC 165 (390)
T ss_dssp TEEEESCCCCCCS-EEHHHHHCTTC----CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHH
T ss_pred CEEEEcCCcccCc-cCHHHHhhhcc----ccC----HHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHH
Confidence 6999999999998 69999997421 122 34577899999999999999998 9999999999
Q ss_pred HHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccc
Q 016804 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLF 316 (382)
Q Consensus 237 IArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~ 316 (382)
|||||+. +|+||||||||++||+..+.++++.|+++.+ + +|+|+||||++.+ ..||||
T Consensus 166 lARAL~~-------~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~-~----------~tvi~vtHd~e~~-~~aDri--- 223 (390)
T 3gd7_A 166 LARSVLS-------KAKILLLDEPSAHLDPVTYQIIRRTLKQAFA-D----------CTVILCEARIEAM-LECDQF--- 223 (390)
T ss_dssp HHHHHHT-------TCCEEEEESHHHHSCHHHHHHHHHHHHTTTT-T----------SCEEEECSSSGGG-TTCSEE---
T ss_pred HHHHHhc-------CCCEEEEeCCccCCCHHHHHHHHHHHHHHhC-C----------CEEEEEEcCHHHH-HhCCEE---
Confidence 9999997 6999999999999999999999999988643 3 5999999998755 458877
Q ss_pred cccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHc
Q 016804 317 QIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFAS 373 (382)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~ 373 (382)
++|++|+|++.|+++++. .+.+..+..|..
T Consensus 224 ---------------------------~vl~~G~i~~~g~~~el~~~p~~~~va~f~g 254 (390)
T 3gd7_A 224 ---------------------------LVIEENKVRQYDSILELYHYPADRFVAGFIG 254 (390)
T ss_dssp ---------------------------EEEETTEEEEESSHHHHHHCCSBHHHHHHSS
T ss_pred ---------------------------EEEECCEEEEECCHHHHHhCCCchHHHhhcC
Confidence 999999999999999976 567888888875
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-51 Score=383.88 Aligned_cols=201 Identities=24% Similarity=0.410 Sum_probs=169.7
Q ss_pred ceEEEEeEEEEeC--CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccc
Q 016804 90 VLIDCRNVYKSFG--EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (382)
Q Consensus 90 ~~I~~~nvs~~yg--~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~ 167 (382)
.+|+++||+|+|+ ++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g--------------- 69 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--------------- 69 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS---------------
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC---------------
Confidence 4699999999994 57899999999999999999999999999999999999999999999998
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccc-----------cCCCCCCChHHHHHHH
Q 016804 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVE-----------DRLPSELSGGMKKRVA 236 (382)
Q Consensus 168 ~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~-----------~~~~~~LSGGqrQRVa 236 (382)
+|+|+||++.+|+. ||+||+.++.. .... ...++++.+++.+.. ++++.+|||||||||+
T Consensus 70 ~i~~v~q~~~~~~~-tv~enl~~~~~----~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~ 140 (229)
T 2pze_A 70 RISFCSQFSWIMPG-TIKENIIFGVS----YDEY----RYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARIS 140 (229)
T ss_dssp CEEEECSSCCCCSB-CHHHHHHTTSC----CCHH----HHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHH
T ss_pred EEEEEecCCcccCC-CHHHHhhccCC----cChH----HHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHH
Confidence 38999999999985 99999988531 1211 123445555554433 3345899999999999
Q ss_pred HHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHH-HHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcc
Q 016804 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDL-IRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCL 315 (382)
Q Consensus 237 IArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~l-L~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~ 315 (382)
|||||++ +|++|||||||+|||+.++..+.+. ++++.+ + +|+|++|||++++. .|||+
T Consensus 141 lAral~~-------~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~-~----------~tvi~vtH~~~~~~-~~d~v-- 199 (229)
T 2pze_A 141 LARAVYK-------DADLYLLDSPFGYLDVLTEKEIFESCVCKLMA-N----------KTRILVTSKMEHLK-KADKI-- 199 (229)
T ss_dssp HHHHHHS-------CCSEEEEESTTTTSCHHHHHHHHHHCCCCCTT-T----------SEEEEECCCHHHHH-HCSEE--
T ss_pred HHHHHhc-------CCCEEEEECcccCCCHHHHHHHHHHHHHHhhC-C----------CEEEEEcCChHHHH-hCCEE--
Confidence 9999997 6999999999999999999999986 455543 4 59999999999886 48877
Q ss_pred ccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccC
Q 016804 316 FQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSS 363 (382)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~ 363 (382)
++|++|++++.|+++++...
T Consensus 200 ----------------------------~~l~~G~i~~~g~~~~~~~~ 219 (229)
T 2pze_A 200 ----------------------------LILHEGSSYFYGTFSELQNL 219 (229)
T ss_dssp ----------------------------EEEETTEEEEEECHHHHHTC
T ss_pred ----------------------------EEEECCEEEEECCHHHHHhc
Confidence 99999999999988887643
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-51 Score=431.22 Aligned_cols=266 Identities=24% Similarity=0.388 Sum_probs=205.4
Q ss_pred hHHhhhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCcceEEEE
Q 016804 16 TKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCR 95 (382)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~ 95 (382)
...++.++..++... .....+..+.+|+......|+........ . +.......|+++
T Consensus 289 ~~~~~~~l~~l~~~~-----~~~~~~~~s~~ri~~~l~~~~~~~~~~~~----------------~--~~~~~~~~i~~~ 345 (587)
T 3qf4_A 289 LMQIMFSLMMIGNIL-----NFIVRASASAKRVLEVLNEKPAIEEADNA----------------L--ALPNVEGSVSFE 345 (587)
T ss_dssp HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHCCCSCCCCTTC----------------B--CCSCCCCCEEEE
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCCccCCCCCc----------------c--ccCCCCCcEEEE
Confidence 333445555444443 45566777888998888776432111100 0 001112349999
Q ss_pred eEEEEeC--CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEe
Q 016804 96 NVYKSFG--EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVF 173 (382)
Q Consensus 96 nvs~~yg--~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~ 173 (382)
||+|+|+ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.... ..+. +.+|||||
T Consensus 346 ~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~-~~~~-r~~i~~v~ 423 (587)
T 3qf4_A 346 NVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVK-LKDL-RGHISAVP 423 (587)
T ss_dssp EEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBC-HHHH-HHHEEEEC
T ss_pred EEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCC-HHHH-HhheEEEC
Confidence 9999994 467999999999999999999999999999999999999999999999999986542 2222 33699999
Q ss_pred cCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCC-----------cccccCCCCCCChHHHHHHHHHHHHh
Q 016804 174 QSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL-----------KGVEDRLPSELSGGMKKRVALARSII 242 (382)
Q Consensus 174 Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL-----------~~~~~~~~~~LSGGqrQRVaIArAL~ 242 (382)
|++.+|+. ||+||+.++.. ....+ ++.++++.+++ +...++++.+||||||||++|||||+
T Consensus 424 Q~~~lf~~-tv~eni~~~~~---~~~~~----~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~ 495 (587)
T 3qf4_A 424 QETVLFSG-TIKENLKWGRE---DATDD----EIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALV 495 (587)
T ss_dssp SSCCCCSE-EHHHHHTTTCS---SCCHH----HHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHH
T ss_pred CCCcCcCc-cHHHHHhccCC---CCCHH----HHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHH
Confidence 99999975 99999987531 12222 23444555544 44456677899999999999999999
Q ss_pred cCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccc
Q 016804 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHI 322 (382)
Q Consensus 243 ~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~ 322 (382)
+ +|++|||||||++||+.++..+++.|+++.+ + +|+|+||||++.+. .||||
T Consensus 496 ~-------~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~----------~tvi~itH~l~~~~-~~d~i--------- 547 (587)
T 3qf4_A 496 K-------KPKVLILDDCTSSVDPITEKRILDGLKRYTK-G----------CTTFIITQKIPTAL-LADKI--------- 547 (587)
T ss_dssp T-------CCSEEEEESCCTTSCHHHHHHHHHHHHHHST-T----------CEEEEEESCHHHHT-TSSEE---------
T ss_pred c-------CCCEEEEECCcccCCHHHHHHHHHHHHHhCC-C----------CEEEEEecChHHHH-hCCEE---------
Confidence 7 5999999999999999999999999999853 4 59999999999986 68877
Q ss_pred hheehhccCCCCcccccccEEEEEeCCeEEEEecccccccC
Q 016804 323 DVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSS 363 (382)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~ 363 (382)
++|++|+|+++|+++|+...
T Consensus 548 ---------------------~vl~~G~i~~~g~~~el~~~ 567 (587)
T 3qf4_A 548 ---------------------LVLHEGKVAGFGTHKELLEH 567 (587)
T ss_dssp ---------------------EEEETTEEEEEECHHHHHHH
T ss_pred ---------------------EEEECCEEEEECCHHHHHhC
Confidence 99999999999988887654
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-51 Score=435.41 Aligned_cols=263 Identities=24% Similarity=0.432 Sum_probs=209.4
Q ss_pred hhhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCcceEEEEeEE
Q 016804 19 VSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRNVY 98 (382)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvs 98 (382)
++.++..+.... ..........+|+......|+....... . +.......|+++||+
T Consensus 306 ~~~~l~~l~~~~-----~~~~~~~~s~~ri~~~l~~~~~~~~~~~-----------------~--~~~~~~~~i~~~~v~ 361 (598)
T 3qf4_B 306 FTRPLNELSNQF-----NMIQMALASAERIFEILDLEEEKDDPDA-----------------V--ELREVRGEIEFKNVW 361 (598)
T ss_dssp SHHHHHHHHHHH-----HHHHHHHHHHHHHHHHTTSCCCCCCSSC-----------------C--CCCSCCCCEEEEEEE
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCCCCCCCCC-----------------C--CCCCCCCeEEEEEEE
Confidence 344554444443 4556677788899988877753211000 0 000111249999999
Q ss_pred EEeCC-eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCC
Q 016804 99 KSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAA 177 (382)
Q Consensus 99 ~~yg~-~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~ 177 (382)
|+|++ +++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.... .... +.+||||||++.
T Consensus 362 ~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~-~~~~-r~~i~~v~Q~~~ 439 (598)
T 3qf4_B 362 FSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIK-RSSL-RSSIGIVLQDTI 439 (598)
T ss_dssp CCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSC-HHHH-HHHEEEECTTCC
T ss_pred EECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCC-HHHH-HhceEEEeCCCc
Confidence 99964 67999999999999999999999999999999999999999999999999987643 2222 336999999999
Q ss_pred CCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChHHHHHHHHHHHHhcCCC
Q 016804 178 LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVALARSIIFDNT 246 (382)
Q Consensus 178 l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGGqrQRVaIArAL~~~~~ 246 (382)
+|+ .||+||+.++.. ..++ +++.++++.++++++.++.| .+||||||||++|||||++
T Consensus 440 lf~-~tv~eni~~~~~---~~~~----~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~--- 508 (598)
T 3qf4_B 440 LFS-TTVKENLKYGNP---GATD----EEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLA--- 508 (598)
T ss_dssp CCS-SBHHHHHHSSST---TCCT----THHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHT---
T ss_pred ccc-ccHHHHHhcCCC---CCCH----HHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhc---
Confidence 997 599999988531 1222 23567788888887777776 6999999999999999997
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchhee
Q 016804 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVI 326 (382)
Q Consensus 247 ~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~ 326 (382)
+|++|||||||++||+.++..+.+.|+++.+ | +|+|+||||++++.. ||||
T Consensus 509 ----~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~----------~t~i~itH~l~~~~~-~d~i------------- 559 (598)
T 3qf4_B 509 ----NPKILILDEATSNVDTKTEKSIQAAMWKLME-G----------KTSIIIAHRLNTIKN-ADLI------------- 559 (598)
T ss_dssp ----CCSEEEECCCCTTCCHHHHHHHHHHHHHHHT-T----------SEEEEESCCTTHHHH-CSEE-------------
T ss_pred ----CCCEEEEECCccCCCHHHHHHHHHHHHHHcC-C----------CEEEEEecCHHHHHc-CCEE-------------
Confidence 5999999999999999999999999999864 4 599999999999876 8877
Q ss_pred hhccCCCCcccccccEEEEEeCCeEEEEecccccccCC
Q 016804 327 ILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSS 364 (382)
Q Consensus 327 ~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~ 364 (382)
++|++|+|+++|+++|+....
T Consensus 560 -----------------~~l~~G~i~~~g~~~~l~~~~ 580 (598)
T 3qf4_B 560 -----------------IVLRDGEIVEMGKHDELIQKR 580 (598)
T ss_dssp -----------------EEECSSSEEECSCHHHHHHTT
T ss_pred -----------------EEEECCEEEEECCHHHHHhCC
Confidence 999999999999888876543
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-50 Score=381.79 Aligned_cols=207 Identities=27% Similarity=0.403 Sum_probs=170.2
Q ss_pred eEEEEeEEEEeC--CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 91 LIDCRNVYKSFG--EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 91 ~I~~~nvs~~yg--~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
+|+++||+++|+ ++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++| +
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g---------------~ 67 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG---------------S 67 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS---------------C
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC---------------E
Confidence 599999999997 57899999999999999999999999999999999999999999999998 2
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHH---HHHHcCCc-----ccccCCCCCCChHHHHHHHHHHH
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKE---NLAAVGLK-----GVEDRLPSELSGGMKKRVALARS 240 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~---~L~~~gL~-----~~~~~~~~~LSGGqrQRVaIArA 240 (382)
||||||++.++ .+||+||+.++.. ...+.. +++.+ +++.+++. ...++++.+|||||||||+||||
T Consensus 68 i~~v~Q~~~~~-~~tv~enl~~~~~----~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAra 141 (237)
T 2cbz_A 68 VAYVPQQAWIQ-NDSLRENILFGCQ----LEEPYY-RSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARA 141 (237)
T ss_dssp EEEECSSCCCC-SEEHHHHHHTTSC----CCTTHH-HHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHH
T ss_pred EEEEcCCCcCC-CcCHHHHhhCccc----cCHHHH-HHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHH
Confidence 89999998765 6899999988542 111111 11111 12233321 13578899999999999999999
Q ss_pred HhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHH---HHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccc
Q 016804 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIR---SVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQ 317 (382)
Q Consensus 241 L~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~---~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~ 317 (382)
|+. +|++|||||||+|||+.++..+++.|. ++. ++ +|+|+||||++.+. .|||+
T Consensus 142 L~~-------~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~----------~tviivtH~~~~~~-~~d~v---- 198 (237)
T 2cbz_A 142 VYS-------NADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KN----------KTRILVTHSMSYLP-QVDVI---- 198 (237)
T ss_dssp HHH-------CCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TT----------SEEEEECSCSTTGG-GSSEE----
T ss_pred Hhc-------CCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CC----------CEEEEEecChHHHH-hCCEE----
Confidence 997 599999999999999999999999985 343 34 59999999999875 68877
Q ss_pred ccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHH
Q 016804 318 IFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPI 367 (382)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~ 367 (382)
++|++|++++.|+++++......+
T Consensus 199 --------------------------~~l~~G~i~~~g~~~~~~~~~~~~ 222 (237)
T 2cbz_A 199 --------------------------IVMSGGKISEMGSYQELLARDGAF 222 (237)
T ss_dssp --------------------------EEEETTEEEEEECHHHHHHHTSHH
T ss_pred --------------------------EEEeCCEEEEeCCHHHHhhccHHH
Confidence 999999999999888876544444
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-49 Score=452.19 Aligned_cols=253 Identities=26% Similarity=0.416 Sum_probs=203.2
Q ss_pred hhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCcceEEEEeEEEEeCC---eeeeEeeeEE
Q 016804 37 FYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRNVYKSFGE---KHILRGVSFK 113 (382)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvs~~yg~---~~iL~~vsl~ 113 (382)
...+...+.+|+...+..++........ ...++..++ |+++||+|+|++ .++|+||||+
T Consensus 1040 ~~~~~~~a~~ri~~~l~~~~~~~~~~~~----------------~~~~~~~g~--I~f~nVsf~Y~~~~~~~VL~~isl~ 1101 (1321)
T 4f4c_A 1040 EYAKATFAGGIIFGMLRKISKIDSLSLA----------------GEKKKLYGK--VIFKNVRFAYPERPEIEILKGLSFS 1101 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHCCCSSCTTCCC----------------SBCCCCCCC--EEEEEEEECCTTSCSSCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhhCcccCCCccCC----------------CCCCCCCCe--EEEEEEEEeCCCCCCCccccceeEE
Confidence 3455666777888877666432111100 001122233 999999999964 3699999999
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhHh
Q 016804 114 IRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLY 193 (382)
Q Consensus 114 i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~ 193 (382)
|++||.+|||||||||||||+++|.|+++|++|+|++||.|+..+.... . |.+|+||||+|.||+. ||+|||.+++.
T Consensus 1102 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~-l-R~~i~~V~Qdp~LF~g-TIreNI~~gld 1178 (1321)
T 4f4c_A 1102 VEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEH-T-RSQIAIVSQEPTLFDC-SIAENIIYGLD 1178 (1321)
T ss_dssp ECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHH-H-HTTEEEECSSCCCCSE-EHHHHHSSSSC
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHH-H-HhheEEECCCCEeeCc-cHHHHHhccCC
Confidence 9999999999999999999999999999999999999999998754333 3 3369999999999985 99999988652
Q ss_pred hcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCC
Q 016804 194 ENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA 262 (382)
Q Consensus 194 ~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPta 262 (382)
. ...+ ++++.++++.++++++....| .+||||||||++|||||++ +|+|||||||||
T Consensus 1179 ~-~~~s----d~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr-------~~~ILiLDEaTS 1246 (1321)
T 4f4c_A 1179 P-SSVT----MAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVR-------NPKILLLDEATS 1246 (1321)
T ss_dssp T-TTSC----HHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHS-------CCSEEEEESCCC
T ss_pred C-CCCC----HHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHh-------CCCEEEEeCccc
Confidence 1 1122 445788899999987766655 5799999999999999998 599999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccCCCCcccccccE
Q 016804 263 GLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYR 342 (382)
Q Consensus 263 gLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (382)
+||+++.+.+++.|+++.+. +|+|+|||+++++.+ ||||
T Consensus 1247 aLD~~tE~~Iq~~l~~~~~~-----------~TvI~IAHRLsTi~~-aD~I----------------------------- 1285 (1321)
T 4f4c_A 1247 ALDTESEKVVQEALDRAREG-----------RTCIVIAHRLNTVMN-ADCI----------------------------- 1285 (1321)
T ss_dssp STTSHHHHHHHHHHTTTSSS-----------SEEEEECSSSSTTTT-CSEE-----------------------------
T ss_pred cCCHHHHHHHHHHHHHHcCC-----------CEEEEeccCHHHHHh-CCEE-----------------------------
Confidence 99999999999999887543 599999999999876 5655
Q ss_pred EEEEeCCeEEEEecccccccCC
Q 016804 343 LIFLYEGKIVWQGMTHEFTSSS 364 (382)
Q Consensus 343 ii~l~~G~i~~~g~~~~~~~~~ 364 (382)
+||++|+|+++|+++|++...
T Consensus 1286 -~Vld~G~IvE~Gth~eLl~~~ 1306 (1321)
T 4f4c_A 1286 -AVVSNGTIIEKGTHTQLMSEK 1306 (1321)
T ss_dssp -EEESSSSEEEEECHHHHHHCC
T ss_pred -EEEECCEEEEECCHHHHHhCC
Confidence 999999999999888887543
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-48 Score=437.91 Aligned_cols=274 Identities=24% Similarity=0.328 Sum_probs=214.9
Q ss_pred hhHhHhhHHhhhhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCc
Q 016804 10 LLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGD 89 (382)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (382)
+.+......++.++..++... .....+....+|+.+.+..++........ .....+..+
T Consensus 356 ~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~s~~ri~~~l~~~~~~~~~~~~---------------~~~~~~~~g- 414 (1321)
T 4f4c_A 356 LTTFSSVMMGSMALGLAGPQL-----AVLGTAQGAASGIYEVLDRKPVIDSSSKA---------------GRKDMKIKG- 414 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHTTTSCCSSCSSSC---------------CCCCCCCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCccccccccc---------------cccCCCCCC-
Confidence 333344444455665555444 56667788889999988766422111100 000011122
Q ss_pred ceEEEEeEEEEeC---CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhcc
Q 016804 90 VLIDCRNVYKSFG---EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (382)
Q Consensus 90 ~~I~~~nvs~~yg---~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~ 166 (382)
.|+++||+|+|+ ++++|+|+||+|++||.+|||||||||||||+++|.|+++|++|+|.+||.++..+... +. +
T Consensus 415 -~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~-~l-r 491 (1321)
T 4f4c_A 415 -DITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLE-FL-R 491 (1321)
T ss_dssp -CEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHH-HH-H
T ss_pred -cEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHH-HH-h
Confidence 399999999996 35799999999999999999999999999999999999999999999999999876433 32 2
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChHHHHHH
Q 016804 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRV 235 (382)
Q Consensus 167 ~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGGqrQRV 235 (382)
.+||||+|+|.||+ .||+|||.|+.. ..+ ++++.++++.++++++.++.| ..||||||||+
T Consensus 492 ~~i~~v~Q~~~Lf~-~TI~eNI~~g~~---~~~----~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRi 563 (1321)
T 4f4c_A 492 KNVAVVSQEPALFN-CTIEENISLGKE---GIT----REEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRI 563 (1321)
T ss_dssp HHEEEECSSCCCCS-EEHHHHHHTTCT---TCC----HHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHH
T ss_pred hcccccCCcceeeC-CchhHHHhhhcc---cch----HHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHH
Confidence 36999999999997 599999998631 122 345778899998877766665 58999999999
Q ss_pred HHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcc
Q 016804 236 ALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCL 315 (382)
Q Consensus 236 aIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~ 315 (382)
+|||||++ +|+|||||||||+||+.++..+++.|.++.+. +|+|+|||+++.+.. ||+|
T Consensus 564 aiARAl~~-------~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~-----------~T~iiiaHrls~i~~-aD~I-- 622 (1321)
T 4f4c_A 564 AIARALVR-------NPKILLLDEATSALDAESEGIVQQALDKAAKG-----------RTTIIIAHRLSTIRN-ADLI-- 622 (1321)
T ss_dssp HHHHHHTT-------CCSEEEEESTTTTSCTTTHHHHHHHHHHHHTT-----------SEEEEECSCTTTTTT-CSEE--
T ss_pred HHHHHHcc-------CCCEEEEecccccCCHHHHHHHHHHHHHHhCC-----------CEEEEEcccHHHHHh-CCEE--
Confidence 99999997 59999999999999999999999999998753 599999999998864 6666
Q ss_pred ccccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCC
Q 016804 316 FQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSS 364 (382)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~ 364 (382)
++|++|+|+++|+.+|+....
T Consensus 623 ----------------------------ivl~~G~ive~Gth~eL~~~~ 643 (1321)
T 4f4c_A 623 ----------------------------ISCKNGQVVEVGDHRALMAQQ 643 (1321)
T ss_dssp ----------------------------EEEETTEEEEEECHHHHHTTT
T ss_pred ----------------------------EEeeCCeeeccCCHHHHHHhh
Confidence 999999999999777776543
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-48 Score=373.49 Aligned_cols=197 Identities=23% Similarity=0.392 Sum_probs=155.2
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
++|+++||++.+ +++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|+++| +|
T Consensus 39 ~~l~~~~l~~~~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g---------------~i 101 (290)
T 2bbs_A 39 DSLSFSNFSLLG--TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---------------RI 101 (290)
T ss_dssp -----------C--CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS---------------CE
T ss_pred ceEEEEEEEEcC--ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC---------------EE
Confidence 469999999864 6799999999999999999999999999999999999999999999987 38
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCccccc-----------CCCCCCChHHHHHHHHH
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVED-----------RLPSELSGGMKKRVALA 238 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~-----------~~~~~LSGGqrQRVaIA 238 (382)
+||||++.+|+. ||+||+. +.. .... .+.++++.+++.+..+ +.+.+|||||||||+||
T Consensus 102 ~~v~Q~~~l~~~-tv~enl~-~~~----~~~~----~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lA 171 (290)
T 2bbs_A 102 SFCSQNSWIMPG-TIKENII-GVS----YDEY----RYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLA 171 (290)
T ss_dssp EEECSSCCCCSS-BHHHHHH-TTC----CCHH----HHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHH
T ss_pred EEEeCCCccCcc-cHHHHhh-Ccc----cchH----HHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHH
Confidence 999999999985 9999997 421 1211 2334556666654333 33589999999999999
Q ss_pred HHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHH-HHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccc
Q 016804 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLI-RSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQ 317 (382)
Q Consensus 239 rAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL-~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~ 317 (382)
|||+. +|++|||||||+|||+.++..+++.+ +++. ++ +|||+||||++.+. .|||+
T Consensus 172 raL~~-------~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~----------~tviivtHd~~~~~-~~d~i---- 228 (290)
T 2bbs_A 172 RAVYK-------DADLYLLDSPFGYLDVLTEKEIFESCVCKLM-AN----------KTRILVTSKMEHLK-KADKI---- 228 (290)
T ss_dssp HHHHS-------CCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TT----------SEEEEECCCHHHHH-HSSEE----
T ss_pred HHHHC-------CCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CC----------CEEEEEecCHHHHH-cCCEE----
Confidence 99997 69999999999999999999999864 4553 34 59999999999886 58877
Q ss_pred ccccchheehhccCCCCcccccccEEEEEeCCeEEEEeccccccc
Q 016804 318 IFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTS 362 (382)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~ 362 (382)
++|++|++++.|+++++..
T Consensus 229 --------------------------~~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 229 --------------------------LILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp --------------------------EEEETTEEEEEECHHHHHH
T ss_pred --------------------------EEEECCeEEEeCCHHHHhh
Confidence 9999999999998888753
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-46 Score=426.35 Aligned_cols=215 Identities=29% Similarity=0.467 Sum_probs=180.8
Q ss_pred eEEEEeEEEEeCC---eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccc
Q 016804 91 LIDCRNVYKSFGE---KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (382)
Q Consensus 91 ~I~~~nvs~~yg~---~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~ 167 (382)
.|+++||+|+|++ .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.... ..+. +.
T Consensus 387 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~-~~~~-r~ 464 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTIN-VRYL-RE 464 (1284)
T ss_dssp CEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSC-HHHH-HH
T ss_pred eEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCC-HHHH-Hh
Confidence 3999999999964 46999999999999999999999999999999999999999999999999987653 3332 23
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccc-----------cCCCCCCChHHHHHHH
Q 016804 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVE-----------DRLPSELSGGMKKRVA 236 (382)
Q Consensus 168 ~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~-----------~~~~~~LSGGqrQRVa 236 (382)
+||||||++.+|+. ||+|||.++.. ..+.+ ++.++++.+++.++. .+.+.+|||||||||+
T Consensus 465 ~i~~v~Q~~~l~~~-ti~eNi~~g~~---~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~Qria 536 (1284)
T 3g5u_A 465 IIGVVSQEPVLFAT-TIAENIRYGRE---DVTMD----EIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIA 536 (1284)
T ss_dssp HEEEECSSCCCCSS-CHHHHHHHHCS---SCCHH----HHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHH
T ss_pred heEEEcCCCccCCc-cHHHHHhcCCC---CCCHH----HHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHH
Confidence 69999999999985 99999998642 12333 344555665554433 3445689999999999
Q ss_pred HHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccc
Q 016804 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLF 316 (382)
Q Consensus 237 IArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~ 316 (382)
|||||++ +|+|||||||||+||+.++..+++.++++.+ | +|+|+|||+++++.. ||||
T Consensus 537 iARal~~-------~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~----------~t~i~itH~l~~i~~-~d~i--- 594 (1284)
T 3g5u_A 537 IARALVR-------NPKILLLDEATSALDTESEAVVQAALDKARE-G----------RTTIVIAHRLSTVRN-ADVI--- 594 (1284)
T ss_dssp HHHHHHH-------CCSEEEEESTTCSSCHHHHHHHHHHHHHHHT-T----------SEEEEECSCHHHHTT-CSEE---
T ss_pred HHHHHhc-------CCCEEEEECCCCCCCHHHHHHHHHHHHHHcC-C----------CEEEEEecCHHHHHc-CCEE---
Confidence 9999998 5999999999999999999999999988754 4 599999999999976 7877
Q ss_pred cccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCC
Q 016804 317 QIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSS 364 (382)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~ 364 (382)
++|++|+|+++|+++++....
T Consensus 595 ---------------------------~vl~~G~i~~~g~~~~l~~~~ 615 (1284)
T 3g5u_A 595 ---------------------------AGFDGGVIVEQGNHDELMREK 615 (1284)
T ss_dssp ---------------------------EECSSSCCCCEECHHHHHHTT
T ss_pred ---------------------------EEEECCEEEEECCHHHHHhCC
Confidence 999999999999888876543
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-46 Score=424.97 Aligned_cols=220 Identities=26% Similarity=0.516 Sum_probs=184.6
Q ss_pred eEEEEeEEEEeCCe---eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccc
Q 016804 91 LIDCRNVYKSFGEK---HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (382)
Q Consensus 91 ~I~~~nvs~~yg~~---~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~ 167 (382)
.|+++||+++|+++ ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++.... .... +.
T Consensus 1030 ~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~-~~~~-r~ 1107 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLN-VQWL-RA 1107 (1284)
T ss_dssp CEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSC-HHHH-TT
T ss_pred cEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCC-HHHH-Hh
Confidence 49999999999753 6999999999999999999999999999999999999999999999999987643 3332 34
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCC-----------CCCChHHHHHHH
Q 016804 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVA 236 (382)
Q Consensus 168 ~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~-----------~~LSGGqrQRVa 236 (382)
+||||||++.+|+ .||+||+.++.. ....+. +++.++++.+++.++.++.| .+|||||||||+
T Consensus 1108 ~i~~v~Q~~~l~~-~ti~eNi~~~~~-~~~~~~----~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~ 1181 (1284)
T 3g5u_A 1108 QLGIVSQEPILFD-CSIAENIAYGDN-SRVVSY----EEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIA 1181 (1284)
T ss_dssp SCEEEESSCCCCS-SBHHHHHTCCCS-SCCCCH----HHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHH
T ss_pred ceEEECCCCcccc-ccHHHHHhccCC-CCCCCH----HHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHH
Confidence 6999999999996 699999987532 111232 33556677777776666554 589999999999
Q ss_pred HHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccc
Q 016804 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLF 316 (382)
Q Consensus 237 IArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~ 316 (382)
|||||++ +|+||||||||++||+.+++.+++.|+++. +| +|+|+||||++++.. ||||
T Consensus 1182 iARal~~-------~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~-~~----------~tvi~isH~l~~i~~-~dri--- 1239 (1284)
T 3g5u_A 1182 IARALVR-------QPHILLLDEATSALDTESEKVVQEALDKAR-EG----------RTCIVIAHRLSTIQN-ADLI--- 1239 (1284)
T ss_dssp HHHHHHH-------CCSSEEEESCSSSCCHHHHHHHHHHHHHHS-SS----------SCEEEECSCTTGGGS-CSEE---
T ss_pred HHHHHHc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHhC-CC----------CEEEEEecCHHHHHc-CCEE---
Confidence 9999998 599999999999999999999999998864 34 599999999999854 8877
Q ss_pred cccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHH
Q 016804 317 QIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPI 367 (382)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~ 367 (382)
++|++|+|++.|+++++......+
T Consensus 1240 ---------------------------~vl~~G~i~~~g~~~~l~~~~g~y 1263 (1284)
T 3g5u_A 1240 ---------------------------VVIQNGKVKEHGTHQQLLAQKGIY 1263 (1284)
T ss_dssp ---------------------------EEEETBEEEEEECHHHHHHSCSHH
T ss_pred ---------------------------EEEECCEEEEECCHHHHHhCCCHH
Confidence 999999999999888887654433
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-44 Score=373.52 Aligned_cols=207 Identities=28% Similarity=0.367 Sum_probs=180.5
Q ss_pred CcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccc
Q 016804 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (382)
Q Consensus 88 ~~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~ 167 (382)
+.++++++|+++.|++. .|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.+. .
T Consensus 284 ~~~~l~~~~l~~~~~~~-~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~---------------~ 347 (538)
T 1yqt_A 284 RETLVTYPRLVKDYGSF-RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD---------------L 347 (538)
T ss_dssp CCEEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCC---------------C
T ss_pred CCeEEEEeeEEEEECCE-EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC---------------c
Confidence 45789999999999874 7999999999999999999999999999999999999999999851 1
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 016804 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (382)
Q Consensus 168 ~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~ 247 (382)
+||||||++.+++.+||.+++....... .. ..+.+.++++.+++.+..++++.+|||||||||+|||||+.
T Consensus 348 ~i~~v~Q~~~~~~~~tv~~~~~~~~~~~--~~---~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~---- 418 (538)
T 1yqt_A 348 TVAYKPQYIKADYEGTVYELLSKIDASK--LN---SNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLR---- 418 (538)
T ss_dssp CEEEECSSCCCCCSSBHHHHHHHHHHHH--HT---CHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTS----
T ss_pred eEEEEecCCcCCCCCcHHHHHHhhhccC--CC---HHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHh----
Confidence 5999999998777789999886531111 11 12457789999999989999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchhee
Q 016804 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHK-KGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVI 326 (382)
Q Consensus 248 ~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~-~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~ 326 (382)
+|++|||||||+|||+.++..++++|+++.+ .| .|||+||||++++..+|||+
T Consensus 419 ---~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g----------~tvi~vsHd~~~~~~~~drv------------- 472 (538)
T 1yqt_A 419 ---DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNE----------KTALVVEHDVLMIDYVSDRL------------- 472 (538)
T ss_dssp ---CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHT----------CEEEEECSCHHHHHHHCSEE-------------
T ss_pred ---CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHhCCEE-------------
Confidence 6999999999999999999999999999974 45 59999999999999999988
Q ss_pred hhccCCCCcccccccEEEEEeC--CeEEEEeccccccc
Q 016804 327 ILGAVAPDKEVFFIYRLIFLYE--GKIVWQGMTHEFTS 362 (382)
Q Consensus 327 ~~~~~~~~~~~~~~~~ii~l~~--G~i~~~g~~~~~~~ 362 (382)
++|++ |++++.|+++++..
T Consensus 473 -----------------~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 473 -----------------MVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp -----------------EEEEEETTTEEEECCCEEHHH
T ss_pred -----------------EEEeCCcceEeecCCHHHHHh
Confidence 88886 78888898887653
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-44 Score=379.58 Aligned_cols=207 Identities=29% Similarity=0.378 Sum_probs=181.1
Q ss_pred CcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccc
Q 016804 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (382)
Q Consensus 88 ~~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~ 167 (382)
+.++++++|++++|++. .|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.+. .
T Consensus 354 ~~~~l~~~~l~~~~~~~-~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~---------------~ 417 (607)
T 3bk7_A 354 RETLVEYPRLVKDYGSF-KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD---------------L 417 (607)
T ss_dssp CCEEEEECCEEEECSSC-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC---------------C
T ss_pred CceEEEEeceEEEecce-EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe---------------e
Confidence 45789999999999864 7999999999999999999999999999999999999999999861 1
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 016804 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (382)
Q Consensus 168 ~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~ 247 (382)
+|||+||++.+++.+||.||+....... . ...+++.++++.+|+.+..++++.+|||||||||+|||||++
T Consensus 418 ~i~~v~Q~~~~~~~~tv~e~~~~~~~~~--~---~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~---- 488 (607)
T 3bk7_A 418 TVAYKPQYIKAEYEGTVYELLSKIDSSK--L---NSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLR---- 488 (607)
T ss_dssp CEEEECSSCCCCCSSBHHHHHHHHHHHH--H---HCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTS----
T ss_pred EEEEEecCccCCCCCcHHHHHHhhhccC--C---CHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHh----
Confidence 5999999998777799999987641111 0 113457889999999999999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchhee
Q 016804 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVI 326 (382)
Q Consensus 248 ~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~ 326 (382)
+|+||||||||+|||+.++..+.++|+++.++ | .|+|+||||++++..+|||+
T Consensus 489 ---~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g----------~tvi~vsHd~~~~~~~adrv------------- 542 (607)
T 3bk7_A 489 ---DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNE----------KTALVVEHDVLMIDYVSDRL------------- 542 (607)
T ss_dssp ---CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTT----------CEEEEECSCHHHHHHHCSEE-------------
T ss_pred ---CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHhCCEE-------------
Confidence 69999999999999999999999999999754 5 59999999999999999988
Q ss_pred hhccCCCCcccccccEEEEEeC--CeEEEEeccccccc
Q 016804 327 ILGAVAPDKEVFFIYRLIFLYE--GKIVWQGMTHEFTS 362 (382)
Q Consensus 327 ~~~~~~~~~~~~~~~~ii~l~~--G~i~~~g~~~~~~~ 362 (382)
++|++ |++++.|+++++.+
T Consensus 543 -----------------~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 543 -----------------IVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp -----------------EEEEEETTTEEEECCCEEHHH
T ss_pred -----------------EEEcCCcceEEecCCHHHHHh
Confidence 88876 88888898887653
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-44 Score=371.73 Aligned_cols=191 Identities=22% Similarity=0.310 Sum_probs=167.1
Q ss_pred CcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccc
Q 016804 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (382)
Q Consensus 88 ~~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~ 167 (382)
..++++++|+++.|++ ..|+.+||+|++||++||+||||||||||+|+|+|+++|++|+|.+++.
T Consensus 266 ~~~~l~~~~l~~~~~~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------- 330 (538)
T 3ozx_A 266 LKTKMKWTKIIKKLGD-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQ-------------- 330 (538)
T ss_dssp CCEEEEECCEEEEETT-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCC--------------
T ss_pred ccceEEEcceEEEECC-EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCe--------------
Confidence 4568999999999987 4688899999999999999999999999999999999999999997642
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 016804 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (382)
Q Consensus 168 ~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~ 247 (382)
.|+|++|+......+||.+|+.+..... ... ..+.++++++.+++.+..++++.+|||||||||+|||||++
T Consensus 331 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~---- 402 (538)
T 3ozx_A 331 ILSYKPQRIFPNYDGTVQQYLENASKDA--LST--SSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAK---- 402 (538)
T ss_dssp CEEEECSSCCCCCSSBHHHHHHHHCSST--TCT--TSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHS----
T ss_pred eeEeechhcccccCCCHHHHHHHhhhhc--cch--hHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHc----
Confidence 4899999987666789999998742111 111 12346788999999999999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 248 ~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|+||||||||+|||+.++.+++++|++++++.+ .|||+||||++++..+||||
T Consensus 403 ---~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g---------~tvi~vsHdl~~~~~~aDri 456 (538)
T 3ozx_A 403 ---EADLYVLDQPSSYLDVEERYIVAKAIKRVTRERK---------AVTFIIDHDLSIHDYIADRI 456 (538)
T ss_dssp ---CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTT---------CEEEEECSCHHHHHHHCSEE
T ss_pred ---CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCC---------CEEEEEeCCHHHHHHhCCEE
Confidence 6999999999999999999999999999986521 59999999999999999988
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-42 Score=365.83 Aligned_cols=213 Identities=22% Similarity=0.306 Sum_probs=179.0
Q ss_pred EeEEEEeCC-eeeeEeeeEEEeCC-----cEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 95 RNVYKSFGE-KHILRGVSFKIRHG-----EAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 95 ~nvs~~yg~-~~iL~~vsl~i~~G-----e~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
++++++|++ ..+++++||++.+| |++||+||||||||||+|+|+|+++|++|+. +. +..
T Consensus 350 ~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~---------~~~ 414 (608)
T 3j16_B 350 ASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP---------KLN 414 (608)
T ss_dssp SSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC---------SCC
T ss_pred cceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc---------CCc
Confidence 667888976 46899999999999 7899999999999999999999999999962 11 225
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~ 248 (382)
++|+||+...+...||++|+..... ..... .+.+.++++.+++.+..++++.+|||||||||+|||||+.
T Consensus 415 i~~~~q~~~~~~~~tv~e~~~~~~~--~~~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~----- 484 (608)
T 3j16_B 415 VSMKPQKIAPKFPGTVRQLFFKKIR--GQFLN---PQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGI----- 484 (608)
T ss_dssp EEEECSSCCCCCCSBHHHHHHHHCS--STTTS---HHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTS-----
T ss_pred EEEecccccccCCccHHHHHHHHhh--ccccc---HHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHh-----
Confidence 9999999776555799999864321 11111 2346788999999999999999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheeh
Q 016804 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHK-KGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVII 327 (382)
Q Consensus 249 a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~-~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~ 327 (382)
+|+||||||||+|||+.++..+.++|+++.+ .| .|+|+||||++++..+||||
T Consensus 485 --~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g----------~tviivtHdl~~~~~~aDrv-------------- 538 (608)
T 3j16_B 485 --PADIYLIDEPSAYLDSEQRIICSKVIRRFILHNK----------KTAFIVEHDFIMATYLADKV-------------- 538 (608)
T ss_dssp --CCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHT----------CEEEEECSCHHHHHHHCSEE--------------
T ss_pred --CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHhCCEE--------------
Confidence 6999999999999999999999999999964 45 59999999999999999988
Q ss_pred hccCCCCcccccccEEEEEeC--CeEEEEecccccccCCCHHHHHHHcC
Q 016804 328 LGAVAPDKEVFFIYRLIFLYE--GKIVWQGMTHEFTSSSNPIVQQFASG 374 (382)
Q Consensus 328 ~~~~~~~~~~~~~~~ii~l~~--G~i~~~g~~~~~~~~~~~~~~~~~~~ 374 (382)
++|++ |+++..|+|.++.+..+..+..+...
T Consensus 539 ----------------ivl~~~~g~~~~~g~p~~~~~~~~~~~~~~~~~ 571 (608)
T 3j16_B 539 ----------------IVFEGIPSKNAHARAPESLLTGCNRFLKNLNVT 571 (608)
T ss_dssp ----------------EECEEETTTEEECCCCEEHHHHHHHHHHHHTCC
T ss_pred ----------------EEEeCCCCeEEecCChHHHhhhhhHHHHhcCce
Confidence 88886 89999999999876555666666533
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-43 Score=364.21 Aligned_cols=196 Identities=27% Similarity=0.371 Sum_probs=158.8
Q ss_pred EEE-EeEEEEeCCe-eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEE---------EECCEECCCCCC
Q 016804 92 IDC-RNVYKSFGEK-HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV---------YIRGRKRAGLIS 160 (382)
Q Consensus 92 I~~-~nvs~~yg~~-~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I---------~i~G~~i~~~~~ 160 (382)
.++ +||+|+|+++ .+|+++| +|++||++||+||||||||||+|+|+|+++|++|++ .++|.++.....
T Consensus 21 ~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~ 99 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFE 99 (538)
T ss_dssp ---CCCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHH
T ss_pred hhHhcCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHH
Confidence 455 6999999876 4999999 999999999999999999999999999999999995 345543211000
Q ss_pred hhhhccceEEEEecCCCCCCC---CCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHH
Q 016804 161 DEEISGLRIGLVFQSAALFDS---LTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVAL 237 (382)
Q Consensus 161 ~~~~~~~~Ig~V~Q~~~l~~~---lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaI 237 (382)
.....+.++++++|...+++. .|+.+|+... . . .+++.++++.+|+.+..++++.+|||||||||+|
T Consensus 100 ~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~----~-~-----~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~i 169 (538)
T 1yqt_A 100 KLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKA----D-E-----TGKLEEVVKALELENVLEREIQHLSGGELQRVAI 169 (538)
T ss_dssp HHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHH----C-S-----SSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhh----h-H-----HHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHH
Confidence 001112358999998654332 3899988531 0 1 1336788999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcc
Q 016804 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCL 315 (382)
Q Consensus 238 ArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~ 315 (382)
||||+. +|+||||||||++||+.++..+.+.|+++.++| .|||+||||++++..+||||++
T Consensus 170 AraL~~-------~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g----------~tvi~vsHd~~~~~~~~dri~v 230 (538)
T 1yqt_A 170 AAALLR-------NATFYFFDEPSSYLDIRQRLNAARAIRRLSEEG----------KSVLVVEHDLAVLDYLSDIIHV 230 (538)
T ss_dssp HHHHHS-------CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTT----------CEEEEECSCHHHHHHHCSEEEE
T ss_pred HHHHhc-------CCCEEEEECCcccCCHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEEEE
Confidence 999997 699999999999999999999999999998766 5999999999999999999833
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-43 Score=368.34 Aligned_cols=195 Identities=28% Similarity=0.409 Sum_probs=161.1
Q ss_pred eEEE--------EeEEEEeCCe-eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEE---------EECC
Q 016804 91 LIDC--------RNVYKSFGEK-HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV---------YIRG 152 (382)
Q Consensus 91 ~I~~--------~nvs~~yg~~-~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I---------~i~G 152 (382)
+|++ +||+++|+++ .+|+++| +|++||++||+||||||||||||+|+|+++|++|++ .++|
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G 161 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRG 161 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTT
T ss_pred eEEEecCCccccCCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCC
Confidence 4888 9999999876 4999999 999999999999999999999999999999999996 3455
Q ss_pred EECCCCCChhhhccceEEEEecCCCCCC---CCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCCh
Q 016804 153 RKRAGLISDEEISGLRIGLVFQSAALFD---SLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSG 229 (382)
Q Consensus 153 ~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~---~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSG 229 (382)
.++..........+.++++++|...+++ ..||.||+... .. .+++.++++.+||++..++++.+|||
T Consensus 162 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~-----~~-----~~~~~~~L~~lgL~~~~~~~~~~LSG 231 (607)
T 3bk7_A 162 NELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV-----DE-----VGKFEEVVKELELENVLDRELHQLSG 231 (607)
T ss_dssp STHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT-----CC-----SSCHHHHHHHTTCTTGGGSBGGGCCH
T ss_pred EehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhh-----HH-----HHHHHHHHHHcCCCchhCCChhhCCH
Confidence 4321100000112235889999754322 13999998641 11 13367789999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHh
Q 016804 230 GMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA 309 (382)
Q Consensus 230 GqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~ 309 (382)
||||||+|||||+. +|+||||||||++||+.++..+.++|+++.++| .|||+||||++++..+
T Consensus 232 GekQRvaIAraL~~-------~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g----------~tvIivsHdl~~~~~~ 294 (607)
T 3bk7_A 232 GELQRVAIAAALLR-------KAHFYFFDEPSSYLDIRQRLKVARVIRRLANEG----------KAVLVVEHDLAVLDYL 294 (607)
T ss_dssp HHHHHHHHHHHHHS-------CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTT----------CEEEEECSCHHHHHHH
T ss_pred HHHHHHHHHHHHhc-------CCCEEEEECCcccCCHHHHHHHHHHHHHHHhcC----------CEEEEEecChHHHHhh
Confidence 99999999999997 699999999999999999999999999998766 5999999999999999
Q ss_pred hchh
Q 016804 310 VDRL 313 (382)
Q Consensus 310 aDrv 313 (382)
||||
T Consensus 295 adri 298 (607)
T 3bk7_A 295 SDVI 298 (607)
T ss_dssp CSEE
T ss_pred CCEE
Confidence 9988
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-41 Score=359.89 Aligned_cols=217 Identities=26% Similarity=0.388 Sum_probs=146.9
Q ss_pred CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHH---------------------HHHHcCCCCC-------ccEEEECCEE
Q 016804 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTIL---------------------KIIAGLLAPD-------KGEVYIRGRK 154 (382)
Q Consensus 103 ~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLL---------------------klI~Gl~~p~-------sG~I~i~G~~ 154 (382)
..++|+||||+|++||++||+||||||||||+ +++.|+..|+ .|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 45799999999999999999999999999998 9999999999 5566666654
Q ss_pred CCCCCChhhhccceEEEEecCC-------------------CCCCCCCHHHHHHhhHhhc-CCCCHH-------HHHHHH
Q 016804 155 RAGLISDEEISGLRIGLVFQSA-------------------ALFDSLTVRENVGFLLYEN-SKMRDE-------QISELV 207 (382)
Q Consensus 155 i~~~~~~~~~~~~~Ig~V~Q~~-------------------~l~~~lTV~eni~~~~~~~-~~~~~~-------~~~~~v 207 (382)
.... .+..+|+|+|.+ ..++.+||+||+.+..... ...... +..++
T Consensus 110 ~~~~------~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 182 (670)
T 3ux8_A 110 TSRN------PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDR- 182 (670)
T ss_dssp -----------CCBHHHHTTCC-------------------------CC--------------------------CHHH-
T ss_pred hhcc------chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHH-
Confidence 3211 111244444432 2356789999998742111 000000 11111
Q ss_pred HHHHHHcCCccc-ccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCc--EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 016804 208 KENLAAVGLKGV-EDRLPSELSGGMKKRVALARSIIFDNTKESVEPE--VLLYDEPTAGLDPIASTVVEDLIRSVHKKGE 284 (382)
Q Consensus 208 ~~~L~~~gL~~~-~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~--iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~ 284 (382)
.++++.+||.+. .++++.+|||||||||+|||||+. +|+ ||||||||+|||+..+..++++|++++++|
T Consensus 183 ~~~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~-------~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g- 254 (670)
T 3ux8_A 183 LGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGS-------RLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLG- 254 (670)
T ss_dssp HHHHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHT-------CCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTT-
T ss_pred HHHHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhh-------CCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcC-
Confidence 245889999864 689999999999999999999997 477 999999999999999999999999998776
Q ss_pred CCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccCCCCcccccccEEEEE------eCCeEEEEeccc
Q 016804 285 NGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFL------YEGKIVWQGMTH 358 (382)
Q Consensus 285 ~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l------~~G~i~~~g~~~ 358 (382)
.|||+||||++.+. .|||+ ++| ++|++++.|+++
T Consensus 255 ---------~tvi~vtHd~~~~~-~~d~i------------------------------i~l~~g~~~~~G~i~~~g~~~ 294 (670)
T 3ux8_A 255 ---------NTLIVVEHDEDTML-AADYL------------------------------IDIGPGAGIHGGEVVAAGTPE 294 (670)
T ss_dssp ---------CEEEEECCCHHHHH-HCSEE------------------------------EEECSSSGGGCCSEEEEECHH
T ss_pred ---------CEEEEEeCCHHHHh-hCCEE------------------------------EEecccccccCCEEEEecCHH
Confidence 59999999999865 58877 888 899999999998
Q ss_pred ccccCCCHHHHHHHcC
Q 016804 359 EFTSSSNPIVQQFASG 374 (382)
Q Consensus 359 ~~~~~~~~~~~~~~~~ 374 (382)
++..........+..+
T Consensus 295 ~~~~~~~~~~~~~~~~ 310 (670)
T 3ux8_A 295 EVMNDPNSLTGQYLSG 310 (670)
T ss_dssp HHHTCTTCHHHHHHTT
T ss_pred HHhcCchhHHHHHhcc
Confidence 8875544455555554
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-41 Score=368.14 Aligned_cols=206 Identities=22% Similarity=0.373 Sum_probs=164.6
Q ss_pred CcceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhc
Q 016804 88 GDVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165 (382)
Q Consensus 88 ~~~~I~~~nvs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~ 165 (382)
+.++|+++||+|+|++ +++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|.
T Consensus 668 ~~~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~------------ 735 (986)
T 2iw3_A 668 QKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN------------ 735 (986)
T ss_dssp TSEEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT------------
T ss_pred CCceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc------------
Confidence 4578999999999975 67999999999999999999999999999999999999999999999862
Q ss_pred cceEEEEecCCCC----CCCCCHHHHHHhhHhhc----------------------------------------------
Q 016804 166 GLRIGLVFQSAAL----FDSLTVRENVGFLLYEN---------------------------------------------- 195 (382)
Q Consensus 166 ~~~Ig~V~Q~~~l----~~~lTV~eni~~~~~~~---------------------------------------------- 195 (382)
.+|||++|++.. ....|+.+++.+.....
T Consensus 736 -~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~ 814 (986)
T 2iw3_A 736 -CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNT 814 (986)
T ss_dssp -CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTE
T ss_pred -cceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhccc
Confidence 136777776421 11246666654321000
Q ss_pred ------------------------------------------------------CCCCHHHHHHHHHHHHHHcCCcc-c-
Q 016804 196 ------------------------------------------------------SKMRDEQISELVKENLAAVGLKG-V- 219 (382)
Q Consensus 196 ------------------------------------------------------~~~~~~~~~~~v~~~L~~~gL~~-~- 219 (382)
.+.......++++++++.+||.. .
T Consensus 815 ~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~ 894 (986)
T 2iw3_A 815 YEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIV 894 (986)
T ss_dssp EEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHH
T ss_pred chhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhh
Confidence 00000011356788999999975 4
Q ss_pred ccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEE
Q 016804 220 EDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVV 299 (382)
Q Consensus 220 ~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIiv 299 (382)
.++++.+|||||||||+|||||+. +|+||||||||+|||+.+...+.+.|+++ + .|||+|
T Consensus 895 ~~~~~~~LSGGQkQRVaLArAL~~-------~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g----------~tVIiI 954 (986)
T 2iw3_A 895 SHSRIRGLSGGQKVKLVLAAGTWQ-------RPHLIVLDEPTNYLDRDSLGALSKALKEF---E----------GGVIII 954 (986)
T ss_dssp HHSCGGGCCHHHHHHHHHHHHHTT-------CCSEEEEECGGGTCCHHHHHHHHHHHHSC---S----------SEEEEE
T ss_pred cCCCccccCHHHHHHHHHHHHHHh-------CCCEEEEECCccCCCHHHHHHHHHHHHHh---C----------CEEEEE
Confidence 688999999999999999999997 69999999999999999999998888765 3 399999
Q ss_pred ccCHHHHHHhhchhccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEec
Q 016804 300 THQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGM 356 (382)
Q Consensus 300 THdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~ 356 (382)
|||++++.++|||+ ++|++|++++.|+
T Consensus 955 SHD~e~v~~l~DrV------------------------------ivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 955 THSAEFTKNLTEEV------------------------------WAVKDGRMTPSGH 981 (986)
T ss_dssp CSCHHHHTTTCCEE------------------------------ECCBTTBCCC---
T ss_pred ECCHHHHHHhCCEE------------------------------EEEECCEEEEeCC
Confidence 99999999999988 8999999988773
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-39 Score=357.40 Aligned_cols=197 Identities=26% Similarity=0.386 Sum_probs=168.8
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
.|...|++++|+++.+|+|+||+|++||+++|+||||||||||||+|+| |+| +|.+.. . ..+++
T Consensus 435 ~L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~-----~---~~~~~ 498 (986)
T 2iw3_A 435 DLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQ-----E---ECRTV 498 (986)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCT-----T---TSCEE
T ss_pred eeEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCccc-----c---ceeEE
Confidence 4777799999999999999999999999999999999999999999996 554 453321 1 12478
Q ss_pred EEecCC-CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 016804 171 LVFQSA-ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (382)
Q Consensus 171 ~V~Q~~-~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~ 248 (382)
|++|++ .+++.+||.||+.+. ..+. .+++.++++.+|+. +..++++.+|||||||||+|||||+.
T Consensus 499 ~v~q~~~~~~~~ltv~e~l~~~---~~~~-----~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~----- 565 (986)
T 2iw3_A 499 YVEHDIDGTHSDTSVLDFVFES---GVGT-----KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLR----- 565 (986)
T ss_dssp ETTCCCCCCCTTSBHHHHHHTT---CSSC-----HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHT-----
T ss_pred EEcccccccccCCcHHHHHHHh---hcCH-----HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhc-----
Confidence 999985 678889999999761 1111 45678899999995 68899999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehh
Q 016804 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIIL 328 (382)
Q Consensus 249 a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~ 328 (382)
+|+||||||||++||+.++..+.++|++ .| .|+|+||||++++.++|||+
T Consensus 566 --~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g----------~tvIivSHdl~~l~~~adri--------------- 615 (986)
T 2iw3_A 566 --NADILLLDEPTNHLDTVNVAWLVNYLNT---CG----------ITSITISHDSVFLDNVCEYI--------------- 615 (986)
T ss_dssp --TCSEEEEESTTTTCCHHHHHHHHHHHHH---SC----------SEEEEECSCHHHHHHHCSEE---------------
T ss_pred --CCCEEEEECCccCCCHHHHHHHHHHHHh---CC----------CEEEEEECCHHHHHHhCCEE---------------
Confidence 6999999999999999999999999988 34 49999999999999999988
Q ss_pred ccCCCCcccccccEEEEEeCCeEE-EEecccccc
Q 016804 329 GAVAPDKEVFFIYRLIFLYEGKIV-WQGMTHEFT 361 (382)
Q Consensus 329 ~~~~~~~~~~~~~~ii~l~~G~i~-~~g~~~~~~ 361 (382)
++|++|+++ +.|+++++.
T Consensus 616 ---------------i~L~~G~iv~~~G~~~e~~ 634 (986)
T 2iw3_A 616 ---------------INYEGLKLRKYKGNFTEFV 634 (986)
T ss_dssp ---------------EEEETTEEEEEESCHHHHH
T ss_pred ---------------EEEECCeeecCCCCHHHHH
Confidence 999999997 678777764
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-39 Score=340.87 Aligned_cols=216 Identities=25% Similarity=0.330 Sum_probs=160.1
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHH----------------------cCCCCCccEEEECCEECCCCCCh
Q 016804 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIA----------------------GLLAPDKGEVYIRGRKRAGLISD 161 (382)
Q Consensus 104 ~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~----------------------Gl~~p~sG~I~i~G~~i~~~~~~ 161 (382)
..+|+||||+|++||++||+||||||||||+++|+ |+..+ +|.|.+++.++......
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~-~~~i~~~~~~~~~~~~~ 413 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHL-DKVIDIDQSPIGRTPRS 413 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGC-SEEEECCSSCSCSSTTC
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccccc-CceeEeccccCCCCCCc
Confidence 46899999999999999999999999999998764 44443 46888988776432110
Q ss_pred hhh---------------------------------------ccceEEEEecCCCCCC----------------------
Q 016804 162 EEI---------------------------------------SGLRIGLVFQSAALFD---------------------- 180 (382)
Q Consensus 162 ~~~---------------------------------------~~~~Ig~V~Q~~~l~~---------------------- 180 (382)
... .....|+++|+..+++
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (670)
T 3ux8_A 414 NPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVT 493 (670)
T ss_dssp CHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCC
T ss_pred chhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhee
Confidence 000 0001244444433322
Q ss_pred ----------CCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc-cccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 181 ----------SLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 181 ----------~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~-~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
.+||.||+.+... . . . .++..+.++.+++.. ..++++.+|||||||||+|||||++++
T Consensus 494 ~~~~~~~~~~~ltv~e~l~~~~~----~-~-~-~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p---- 562 (670)
T 3ux8_A 494 YKGKNIAEVLDMTVEDALDFFAS----I-P-K-IKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRS---- 562 (670)
T ss_dssp BTTBCHHHHHTSBHHHHHHHTTT----C-H-H-HHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCC----
T ss_pred ecCCCHHHHhhCCHHHHHHHHHH----h-h-h-HHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCC----
Confidence 4799999987431 1 1 1 234567889999964 568999999999999999999999741
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
.+|+||||||||+|||+.++..++++|++++++| .|||+||||++.+. .||||
T Consensus 563 ~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g----------~tvi~vtHd~~~~~-~~d~i---------------- 615 (670)
T 3ux8_A 563 NGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNG----------DTVLVIEHNLDVIK-TADYI---------------- 615 (670)
T ss_dssp CSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTT----------CEEEEECCCHHHHT-TCSEE----------------
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCHHHHH-hCCEE----------------
Confidence 1357999999999999999999999999998776 59999999999874 68877
Q ss_pred cCCCCcccccccEEEEE------eCCeEEEEecccccccCCCHHHHHHH
Q 016804 330 AVAPDKEVFFIYRLIFL------YEGKIVWQGMTHEFTSSSNPIVQQFA 372 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l------~~G~i~~~g~~~~~~~~~~~~~~~~~ 372 (382)
++| ++|+|+++|+++++......+...|+
T Consensus 616 --------------~~l~~~~g~~~G~i~~~g~~~~~~~~~~~~~~~~~ 650 (670)
T 3ux8_A 616 --------------IDLGPEGGDRGGQIVAVGTPEEVAEVKESHTGRYL 650 (670)
T ss_dssp --------------EEEESSSGGGCCEEEEEECHHHHHTCTTCHHHHHH
T ss_pred --------------EEecCCcCCCCCEEEEecCHHHHHhCCccHHHHHH
Confidence 999 89999999999988655445555444
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-38 Score=336.18 Aligned_cols=193 Identities=26% Similarity=0.357 Sum_probs=146.6
Q ss_pred eEEEEeCCe-eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEE-----------ECCEECCCCCChhh
Q 016804 96 NVYKSFGEK-HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY-----------IRGRKRAGLISDEE 163 (382)
Q Consensus 96 nvs~~yg~~-~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~-----------i~G~~i~~~~~~~~ 163 (382)
|++++|+.. ..|++++ .+++||++||+||||||||||||+|+|+++|++|+|. +.|.++........
T Consensus 82 ~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~ 160 (608)
T 3j16_B 82 HVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160 (608)
T ss_dssp TEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHH
T ss_pred CeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHH
Confidence 578999754 4677777 5899999999999999999999999999999999982 33322110000000
Q ss_pred hccceEEEEecCCCCC------CCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHH
Q 016804 164 ISGLRIGLVFQSAALF------DSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVAL 237 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~~l~------~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaI 237 (382)
.......+.+|....+ +..++.+++... ... ..+++.++++.+||.+..++++.+|||||||||+|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~----~~~----~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~i 232 (608)
T 3j16_B 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLR----MEK----SPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAI 232 (608)
T ss_dssp HTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHH----CCS----CHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHH
T ss_pred HHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhh----hhh----HHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHH
Confidence 0111123334432111 123555555431 111 13457889999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhc
Q 016804 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLC 314 (382)
Q Consensus 238 ArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~ 314 (382)
||||+. +|++|||||||++||+.++..+.++|+++.++| .|||+||||++++..+||||+
T Consensus 233 AraL~~-------~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g----------~tvi~vtHdl~~~~~~~drv~ 292 (608)
T 3j16_B 233 GMSCVQ-------EADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPT----------KYVICVEHDLSVLDYLSDFVC 292 (608)
T ss_dssp HHHHHS-------CCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTT----------CEEEEECSCHHHHHHHCSEEE
T ss_pred HHHHHh-------CCCEEEEECcccCCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHhCCEEE
Confidence 999997 699999999999999999999999999998776 599999999999999999883
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-38 Score=329.34 Aligned_cols=191 Identities=24% Similarity=0.345 Sum_probs=147.8
Q ss_pred EeEEEEeCCe-eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEE-----------EECCEECCCCCChh
Q 016804 95 RNVYKSFGEK-HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV-----------YIRGRKRAGLISDE 162 (382)
Q Consensus 95 ~nvs~~yg~~-~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I-----------~i~G~~i~~~~~~~ 162 (382)
++++.+||.. .-|.++.. +++||++||+||||||||||+|+|+|+++|++|+| .++|+++.......
T Consensus 3 ~~~~~~~~~~~f~l~~l~~-~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~ 81 (538)
T 3ozx_A 3 GEVIHRYKVNGFKLFGLPT-PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKEL 81 (538)
T ss_dssp CCEEEESSTTSCEEECCCC-CCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHH
T ss_pred CCCceecCCCceeecCCCC-CCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHH
Confidence 4578899743 34444443 56999999999999999999999999999999998 56776542110000
Q ss_pred hhccceEEEEecCC----CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHH
Q 016804 163 EISGLRIGLVFQSA----ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALA 238 (382)
Q Consensus 163 ~~~~~~Ig~V~Q~~----~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIA 238 (382)
......+...+|.. .++. .++.+++... . . .++++++++.+|+....++++.+|||||||||+||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~-~~v~~~l~~~----~-~-----~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA 150 (538)
T 3ozx_A 82 YSNELKIVHKIQYVEYASKFLK-GTVNEILTKI----D-E-----RGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVA 150 (538)
T ss_dssp HTTCCCEEEECSCTTGGGTTCC-SBHHHHHHHH----C-C-----SSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHH
T ss_pred hhcccchhhccchhhhhhhhcc-CcHHHHhhcc----h-h-----HHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence 01112355555543 3343 4888876431 1 1 12356789999999999999999999999999999
Q ss_pred HHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcc
Q 016804 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCL 315 (382)
Q Consensus 239 rAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~ 315 (382)
|||+. +|+||||||||++||+.++..+.++|+++.+ | .|||+||||++++..+||||++
T Consensus 151 ~aL~~-------~p~illlDEPts~LD~~~~~~l~~~l~~l~~-g----------~tii~vsHdl~~~~~~~d~i~v 209 (538)
T 3ozx_A 151 ASLLR-------EADVYIFDQPSSYLDVRERMNMAKAIRELLK-N----------KYVIVVDHDLIVLDYLTDLIHI 209 (538)
T ss_dssp HHHHS-------CCSEEEEESTTTTCCHHHHHHHHHHHHHHCT-T----------SEEEEECSCHHHHHHHCSEEEE
T ss_pred HHHHc-------CCCEEEEECCcccCCHHHHHHHHHHHHHHhC-C----------CEEEEEEeChHHHHhhCCEEEE
Confidence 99997 6999999999999999999999999999965 5 5999999999999999998833
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=325.24 Aligned_cols=227 Identities=22% Similarity=0.319 Sum_probs=171.0
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHH---------HHHHcCCCCC------cc------EEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTIL---------KIIAGLLAPD------KG------EVY 149 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLL---------klI~Gl~~p~------sG------~I~ 149 (382)
.+++++++ ...|+||||+|++|++++|+||||||||||+ +++.+...+. +| .+.
T Consensus 589 ~l~v~~~~-----~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~ 663 (916)
T 3pih_A 589 SLKIKGVR-----HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIA 663 (916)
T ss_dssp EEEEEEEC-----STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEE
T ss_pred eEEEeeec-----cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEe
Confidence 35555553 4579999999999999999999999999997 4555544433 23 344
Q ss_pred ECCEECCCCCCh--h-------------------h------------------hccceEEEEecCCCCCC----------
Q 016804 150 IRGRKRAGLISD--E-------------------E------------------ISGLRIGLVFQSAALFD---------- 180 (382)
Q Consensus 150 i~G~~i~~~~~~--~-------------------~------------------~~~~~Ig~V~Q~~~l~~---------- 180 (382)
++..++...... . . ......|+++|+..+++
T Consensus 664 idq~pig~~~rs~~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~ 743 (916)
T 3pih_A 664 IDQSPIGRTPRSNPATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCK 743 (916)
T ss_dssp ECSCCCCCCTTCCHHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTT
T ss_pred eccccccccccccccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeeccccc
Confidence 544433211000 0 0 00012578888776654
Q ss_pred ----------------------CCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc-cccCCCCCCChHHHHHHHH
Q 016804 181 ----------------------SLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVAL 237 (382)
Q Consensus 181 ----------------------~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~-~~~~~~~~LSGGqrQRVaI 237 (382)
.+||.|++.|... . ....++.++|+.+||.. ..++++.+|||||||||+|
T Consensus 744 g~r~~~e~l~i~~~g~~i~~vl~~tv~eal~f~~~----~---~~~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~L 816 (916)
T 3pih_A 744 GKRYNRETLEITYKGKNISDILDMTVDEALEFFKN----I---PSIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKL 816 (916)
T ss_dssp TSCBCTTGGGCCBTTBCHHHHHSSBHHHHHHHTTT----C---HHHHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHH
T ss_pred ccccchhhhhhhhccCCHHHHhhCCHHHHHHHHhc----c---hhHHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHH
Confidence 3678888876321 1 12345678999999975 4688999999999999999
Q ss_pred HHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccc
Q 016804 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQ 317 (382)
Q Consensus 238 ArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~ 317 (382)
||||+++ ..+|+||||||||+|||+..+..++++|+++.++| .|||+||||++.+.. ||||
T Consensus 817 AraL~~~----p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G----------~TVIvI~HdL~~i~~-ADrI---- 877 (916)
T 3pih_A 817 ASELRKR----DTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRG----------NTVIVIEHNLDVIKN-ADHI---- 877 (916)
T ss_dssp HHHHTSC----CCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTT----------CEEEEECCCHHHHTT-CSEE----
T ss_pred HHHHhhC----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHh-CCEE----
Confidence 9999974 12468999999999999999999999999998876 599999999998865 8877
Q ss_pred ccccchheehhccCCCCcccccccEEEEE------eCCeEEEEecccccccCCCHHHHHHHcC
Q 016804 318 IFGHIDVVIILGAVAPDKEVFFIYRLIFL------YEGKIVWQGMTHEFTSSSNPIVQQFASG 374 (382)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~l------~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 374 (382)
++| ++|+|+++|+++++....+.++..|+..
T Consensus 878 --------------------------ivLgp~gg~~~G~Iv~~Gtpeel~~~~~syt~~~l~~ 914 (916)
T 3pih_A 878 --------------------------IDLGPEGGKEGGYIVATGTPEEIAKNPHSYTGRFLKN 914 (916)
T ss_dssp --------------------------EEEESSSGGGCCEEEEEESHHHHHSCTTCHHHHHHTT
T ss_pred --------------------------EEecCCCCCCCCEEEEEcCHHHHHhCCchHHHHHHHh
Confidence 999 8999999999999887667888888764
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=323.25 Aligned_cols=231 Identities=20% Similarity=0.296 Sum_probs=167.2
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHH-HHcCC-------CC-----------------
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKI-IAGLL-------AP----------------- 143 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLkl-I~Gl~-------~p----------------- 143 (382)
...|+++|+++ ..|+||||+|++||++||+|+||||||||+++ |+|++ +|
T Consensus 500 ~~~L~v~~l~~-----~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~ 574 (842)
T 2vf7_A 500 AGWLELNGVTR-----NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSA 574 (842)
T ss_dssp SCEEEEEEEEE-----TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CCC
T ss_pred CceEEEEeeee-----cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccc
Confidence 46799999985 37999999999999999999999999999996 77553 23
Q ss_pred -Ccc-------EEEECCEECCCCCCh---------hhhc---------c---------------------ceEEEEecCC
Q 016804 144 -DKG-------EVYIRGRKRAGLISD---------EEIS---------G---------------------LRIGLVFQSA 176 (382)
Q Consensus 144 -~sG-------~I~i~G~~i~~~~~~---------~~~~---------~---------------------~~Ig~V~Q~~ 176 (382)
.+| .|.++|.++...... ...+ + ...|++..+.
T Consensus 575 ~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~ 654 (842)
T 2vf7_A 575 RLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVEL 654 (842)
T ss_dssp EEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETT
T ss_pred cccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchhh
Confidence 467 688888776432110 0000 0 0112222121
Q ss_pred CCC------------------------CCCCHHHHHHhhHhh----cCCCCHHHHHHHHHHHHHHcCCcc-cccCCCCCC
Q 016804 177 ALF------------------------DSLTVRENVGFLLYE----NSKMRDEQISELVKENLAAVGLKG-VEDRLPSEL 227 (382)
Q Consensus 177 ~l~------------------------~~lTV~eni~~~~~~----~~~~~~~~~~~~v~~~L~~~gL~~-~~~~~~~~L 227 (382)
.++ ...++.||+.+.... .. .... .+++.++|+.+||.. ..++++.+|
T Consensus 655 ~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~--~~~~-~~~~~~~L~~~gL~~~~l~~~~~~L 731 (842)
T 2vf7_A 655 LFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFA--DESA-IFRALDTLREVGLGYLRLGQPATEL 731 (842)
T ss_dssp CSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTT--TSHH-HHHHHHHHHHTTCTTSBTTCCGGGC
T ss_pred hcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhh--cchH-HHHHHHHHHHcCCCcccccCCcccC
Confidence 222 224555554322110 11 1112 246788999999987 468999999
Q ss_pred ChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHH
Q 016804 228 SGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIR 307 (382)
Q Consensus 228 SGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~ 307 (382)
||||||||+|||+|++++ .+|+||||||||+|||+..+..++++|+++.++| .|||+||||++++
T Consensus 732 SGGekQRv~LAraL~~~p----~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G----------~tVIvisHdl~~i- 796 (842)
T 2vf7_A 732 SGGEAQRIKLATELRRSG----RGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAG----------NTVIAVEHKMQVV- 796 (842)
T ss_dssp CHHHHHHHHHHHTTSSCC----SSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTT----------CEEEEECCCHHHH-
T ss_pred CHHHHHHHHHHHHHHhCC----CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCC----------CEEEEEcCCHHHH-
Confidence 999999999999999630 0379999999999999999999999999998876 5999999999999
Q ss_pred HhhchhccccccccchheehhccCCCCcccccccEEEEE------eCCeEEEEecccccccCCCHHHHHHH
Q 016804 308 RAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFL------YEGKIVWQGMTHEFTSSSNPIVQQFA 372 (382)
Q Consensus 308 ~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l------~~G~i~~~g~~~~~~~~~~~~~~~~~ 372 (382)
..|||| ++| ++|+|++.|+++++......++..|+
T Consensus 797 ~~aDri------------------------------i~L~p~~g~~~G~Iv~~g~~~el~~~~~~~t~~~l 837 (842)
T 2vf7_A 797 AASDWV------------------------------LDIGPGAGEDGGRLVAQGTPAEVAQAAGSVTAPYL 837 (842)
T ss_dssp TTCSEE------------------------------EEECSSSGGGCCSEEEEECHHHHTTCTTCSSHHHH
T ss_pred HhCCEE------------------------------EEECCCCCCCCCEEEEEcCHHHHHhCchhHHHHHH
Confidence 678877 999 79999999999888654333444443
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=334.68 Aligned_cols=212 Identities=14% Similarity=0.121 Sum_probs=170.5
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc-E-EEECCEECCCCCChhhhcc
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG-E-VYIRGRKRAGLISDEEISG 166 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG-~-I~i~G~~i~~~~~~~~~~~ 166 (382)
.++++++||+|+|+ ++||++++|++++|+||||||||||+|+|+|+++|++| + |+++|. . +
T Consensus 116 ~~mi~~~nl~~~y~------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~-~----------~ 178 (460)
T 2npi_A 116 HTMKYIYNLHFMLE------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD-P----------Q 178 (460)
T ss_dssp CTHHHHHHHHHHHH------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC-T----------T
T ss_pred cchhhhhhhhehhh------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC-c----------c
Confidence 46799999999996 79999999999999999999999999999999999999 9 999982 1 2
Q ss_pred ceEEEEecCCCC---CCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHH--H
Q 016804 167 LRIGLVFQSAAL---FDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARS--I 241 (382)
Q Consensus 167 ~~Ig~V~Q~~~l---~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArA--L 241 (382)
..++|+||+..+ ++.+|++||+ |+.....+... .+++.++++.+|+.+..+ +.+|||||||||+|||| |
T Consensus 179 ~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~---~~~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL 252 (460)
T 2npi_A 179 QPIFTVPGCISATPISDILDAQLPT-WGQSLTSGATL---LHNKQPMVKNFGLERINE--NKDLYLECISQLGQVVGQRL 252 (460)
T ss_dssp SCSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCS---SCCBCCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHH
T ss_pred CCeeeeccchhhcccccccchhhhh-cccccccCcch---HHHHHHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHh
Confidence 258999999854 4457999999 75432111111 223456788899988766 89999999999999999 9
Q ss_pred hcCCCCCCCCCcE----EEEeC-CCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHH------HHHHhh
Q 016804 242 IFDNTKESVEPEV----LLYDE-PTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS------TIRRAV 310 (382)
Q Consensus 242 ~~~~~~~a~~P~i----LLLDE-PtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~------~~~~~a 310 (382)
+. +|++ ||||| ||++||+. +..+.++++++ + .|+|+||||++ ++.++|
T Consensus 253 ~~-------~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~---~----------~tviiVth~~~~~l~~~~~~~~~ 311 (460)
T 2npi_A 253 HL-------DPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL---N----------VNIMLVLCSETDPLWEKVKKTFG 311 (460)
T ss_dssp HH-------CHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT---T----------CCEEEEECCSSCTHHHHHHHHHH
T ss_pred cc-------CcccCcceEEEeCCcccccChh-HHHHHHHHHHh---C----------CCEEEEEccCchhhhHHHHHHhc
Confidence 97 5999 99999 99999999 55555555443 3 48999999987 888999
Q ss_pred ch-----hccccccccchheehhccCCCCcccccccEEEEEe-CCeEEEEecccccccCCCHHHHHHHcCC
Q 016804 311 DR-----LCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLY-EGKIVWQGMTHEFTSSSNPIVQQFASGS 375 (382)
Q Consensus 311 Dr-----v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~-~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 375 (382)
|| | ++|+ +|+|+ .|++.++....+..+.+|+.|.
T Consensus 312 dr~~~~~v------------------------------i~l~k~G~iv-~g~~~~~~~~~~~~i~~~f~g~ 351 (460)
T 2npi_A 312 PELGNNNI------------------------------FFIPKLDGVS-AVDDVYKRSLQRTSIREYFYGS 351 (460)
T ss_dssp HHHCGGGE------------------------------EEECCCTTCC-CCCHHHHHHHHHHHHHHHHHCC
T ss_pred ccccCCEE------------------------------EEEeCCCcEE-ECCHHHHhhhhHHHHHHHhCCC
Confidence 98 6 9999 99999 8877766444456677776553
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-35 Score=322.46 Aligned_cols=227 Identities=25% Similarity=0.328 Sum_probs=169.3
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHH-cCC-------CCCcc-------------E
Q 016804 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIA-GLL-------APDKG-------------E 147 (382)
Q Consensus 89 ~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~-Gl~-------~p~sG-------------~ 147 (382)
.+.|+++|+++ ..|+||||+|++||++||+|+||||||||+++|+ |.+ .+..| .
T Consensus 627 ~~~L~v~~l~~-----~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~ 701 (972)
T 2r6f_A 627 GRWLEVVGARE-----HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKV 701 (972)
T ss_dssp SCEEEEEEECS-----SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEE
T ss_pred ceEEEEecCcc-----cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceE
Confidence 36799999963 4799999999999999999999999999999864 221 12233 4
Q ss_pred EEECCEECCCCCC--hh-------hh--------ccceEEEEecCCCCC-------------------------------
Q 016804 148 VYIRGRKRAGLIS--DE-------EI--------SGLRIGLVFQSAALF------------------------------- 179 (382)
Q Consensus 148 I~i~G~~i~~~~~--~~-------~~--------~~~~Ig~V~Q~~~l~------------------------------- 179 (382)
|.+++.++..... .. .. ..+.+||++|.+.+.
T Consensus 702 I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~ 781 (972)
T 2r6f_A 702 IDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEV 781 (972)
T ss_dssp EEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTT
T ss_pred EEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccc
Confidence 7888877642111 00 00 011257777754321
Q ss_pred ---------------C--------CCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc-cccCCCCCCChHHHHHH
Q 016804 180 ---------------D--------SLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRV 235 (382)
Q Consensus 180 ---------------~--------~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~-~~~~~~~~LSGGqrQRV 235 (382)
. .+|+.|++.|.. .. . .. +++.++++.+||.. ..++++.+|||||||||
T Consensus 782 c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~----~~-~-~~-~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv 854 (972)
T 2r6f_A 782 CHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFA----SI-P-KI-KRKLETLYDVGLGYMKLGQPATTLSGGEAQRV 854 (972)
T ss_dssp TTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTC----SC-H-HH-HHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHH
T ss_pred cccccccchhhhhhccCCCHHHhhhcCHHHHHHHHh----cc-h-hH-HHHHHHHHHcCCCcccccCchhhCCHHHHHHH
Confidence 0 356777776532 11 1 12 33567899999987 78999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcc
Q 016804 236 ALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCL 315 (382)
Q Consensus 236 aIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~ 315 (382)
+|||+|+++ ..+|+||||||||+|||+.++..++++|+++.++| .|||+||||++++ ..||||
T Consensus 855 ~LAraL~~~----p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G----------~TVIvisHdl~~i-~~aDrI-- 917 (972)
T 2r6f_A 855 KLAAELHRR----SNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNG----------DTVLVIEHNLDVI-KTADYI-- 917 (972)
T ss_dssp HHHHHHSSC----CCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTT----------CEEEEECCCHHHH-TTCSEE--
T ss_pred HHHHHHhcC----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCC----------CEEEEEcCCHHHH-HhCCEE--
Confidence 999999963 11369999999999999999999999999998876 5999999999987 478877
Q ss_pred ccccccchheehhccCCCCcccccccEEEEE------eCCeEEEEecccccccCCCHHHHHHH
Q 016804 316 FQIFGHIDVVIILGAVAPDKEVFFIYRLIFL------YEGKIVWQGMTHEFTSSSNPIVQQFA 372 (382)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l------~~G~i~~~g~~~~~~~~~~~~~~~~~ 372 (382)
++| ++|+|++.|+++++......++..|+
T Consensus 918 ----------------------------ivL~p~gG~~~G~Iv~~g~~~el~~~~~~~t~~~l 952 (972)
T 2r6f_A 918 ----------------------------IDLGPEGGDRGGQIVAVGTPEEVAEVKESHTGRYL 952 (972)
T ss_dssp ----------------------------EEECSSSTTSCCSEEEEESHHHHHTCTTCHHHHHH
T ss_pred ----------------------------EEEcCCCCCCCCEEEEecCHHHHHhCchhHHHHHH
Confidence 999 78999999999887654334444443
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-33 Score=277.33 Aligned_cols=188 Identities=20% Similarity=0.278 Sum_probs=135.2
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC--------------------------------------CCc
Q 016804 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA--------------------------------------PDK 145 (382)
Q Consensus 104 ~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~--------------------------------------p~s 145 (382)
..+++++||++.+| +++|+|||||||||||++|.++.. +++
T Consensus 48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~ 126 (415)
T 4aby_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR 126 (415)
T ss_dssp ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC
T ss_pred ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCc
Confidence 36899999999999 999999999999999999988774 457
Q ss_pred cEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcC---------------------CC------
Q 016804 146 GEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENS---------------------KM------ 198 (382)
Q Consensus 146 G~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~---------------------~~------ 198 (382)
|+++++|+++... ......+..+++++|+..++.. +..++..|.-.... ..
T Consensus 127 ~~i~ing~~~~~~-~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~ 204 (415)
T 4aby_A 127 GAARLSGEVVSVR-ELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESS 204 (415)
T ss_dssp EEEEETTEEECHH-HHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred eEEEECCEECCHH-HHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 8999999986421 1122222238999999877643 55444433110000 00
Q ss_pred --------------------------------CHHHHHHHHHHHHHHcCCccc-----------------------cc--
Q 016804 199 --------------------------------RDEQISELVKENLAAVGLKGV-----------------------ED-- 221 (382)
Q Consensus 199 --------------------------------~~~~~~~~v~~~L~~~gL~~~-----------------------~~-- 221 (382)
......+.+.+.++.+++... ..
T Consensus 205 ~~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 284 (415)
T 4aby_A 205 KHPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSAN 284 (415)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESS
T ss_pred hcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcC
Confidence 001122334455666665320 11
Q ss_pred -----CCCCC-CChHHHHHHHHHHHHhcCCCCCCCCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCc
Q 016804 222 -----RLPSE-LSGGMKKRVALARSIIFDNTKESVEP--EVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNI 293 (382)
Q Consensus 222 -----~~~~~-LSGGqrQRVaIArAL~~~~~~~a~~P--~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~ 293 (382)
+.+.. |||||||||+||++|+. +| ++|||||||+|||+..+..+.+.|+++. ++
T Consensus 285 ~~~~~~~~~~~lSgGe~qrl~lA~~l~~-------~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~---------- 346 (415)
T 4aby_A 285 PGEELGPLSDVASGGELSRVMLAVSTVL-------GADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DT---------- 346 (415)
T ss_dssp SSCCCCBGGGCSCHHHHHHHHHHHHHHH-------CCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TT----------
T ss_pred CCCcccchhhhcCHhHHHHHHHHHHHHh-------CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CC----------
Confidence 11222 79999999999999997 58 9999999999999999999999999997 44
Q ss_pred eEEEEEccCHHHHHHhhchh
Q 016804 294 ASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 294 ~tiIivTHdl~~~~~~aDrv 313 (382)
.|||+||||++.+ ..|||+
T Consensus 347 ~~vi~itH~~~~~-~~~d~i 365 (415)
T 4aby_A 347 RQVLVVTHLAQIA-ARAHHH 365 (415)
T ss_dssp SEEEEECSCHHHH-TTCSEE
T ss_pred CEEEEEeCcHHHH-hhcCeE
Confidence 4999999999765 578877
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.6e-34 Score=264.38 Aligned_cols=151 Identities=19% Similarity=0.276 Sum_probs=104.2
Q ss_pred EEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCC
Q 016804 99 KSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAAL 178 (382)
Q Consensus 99 ~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l 178 (382)
|+|+++.+|+++ ++||+++|+||||||||||+|+|+|+ +|++|+|.. .++.. .... .+.+|||+||++
T Consensus 8 k~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~--~~~~~--~~~~-~~~~ig~v~q~~-- 75 (208)
T 3b85_A 8 KTLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSR--IILTR--PAVE-AGEKLGFLPGTL-- 75 (208)
T ss_dssp CSHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSE--EEEEE--CSCC-TTCCCCSSCC----
T ss_pred CCHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeee--EEecC--Cchh-hhcceEEecCCH--
Confidence 356677899986 89999999999999999999999999 999999943 22211 1111 133699999987
Q ss_pred CCCCCHHHHH-HhhH--h-hcCC-CCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCc
Q 016804 179 FDSLTVRENV-GFLL--Y-ENSK-MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPE 253 (382)
Q Consensus 179 ~~~lTV~eni-~~~~--~-~~~~-~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~ 253 (382)
+||+ .+.. . .... .. .+.+.++++. ++ ||||||+|||||+. +|+
T Consensus 76 ------~enl~~~~~~~~~~~~~~~~----~~~~~~~l~~-gl-------------Gq~qrv~lAraL~~-------~p~ 124 (208)
T 3b85_A 76 ------NEKIDPYLRPLHDALRDMVE----PEVIPKLMEA-GI-------------VEVAPLAYMRGRTL-------NDA 124 (208)
T ss_dssp ----------CTTTHHHHHHHTTTSC----TTHHHHHHHT-TS-------------EEEEEGGGGTTCCB-------CSE
T ss_pred ------HHHHHHHHHHHHHHHHHhcc----HHHHHHHHHh-CC-------------chHHHHHHHHHHhc-------CCC
Confidence 3444 2211 0 0001 11 1234556665 44 99999999999997 699
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHH
Q 016804 254 VLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRR 308 (382)
Q Consensus 254 iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~ 308 (382)
+|||||||++ ++..+.++|+++ ++| +|+| +|||++++..
T Consensus 125 lllLDEPts~----~~~~l~~~l~~l-~~g----------~tii-vtHd~~~~~~ 163 (208)
T 3b85_A 125 FVILDEAQNT----TPAQMKMFLTRL-GFG----------SKMV-VTGDITQVDL 163 (208)
T ss_dssp EEEECSGGGC----CHHHHHHHHTTB-CTT----------CEEE-EEEC------
T ss_pred EEEEeCCccc----cHHHHHHHHHHh-cCC----------CEEE-EECCHHHHhC
Confidence 9999999999 888999999988 555 5889 9999987764
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-29 Score=249.70 Aligned_cols=85 Identities=20% Similarity=0.327 Sum_probs=76.8
Q ss_pred cCCCCCCChHHHHHHHHHHHHh------cCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCce
Q 016804 221 DRLPSELSGGMKKRVALARSII------FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIA 294 (382)
Q Consensus 221 ~~~~~~LSGGqrQRVaIArAL~------~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~ 294 (382)
++++.+|||||||||+|||||+ . +|++|||||||++||+..+..++++|+++.++| .
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~-------~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g----------~ 336 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASG-------RLDAFFIDEGFSSLDTENKEKIASVLKELERLN----------K 336 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTT-------TCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSS----------S
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccC-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCC----------C
Confidence 5788999999999999999998 4 599999999999999999999999999997766 5
Q ss_pred EEEEEccCHHHHHHhhchhccccccccchheehhccCCCCcccccccEEEEEeCCeEEE
Q 016804 295 SYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVW 353 (382)
Q Consensus 295 tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~ 353 (382)
|||+||||++. ...|||+ ++|++|++++
T Consensus 337 tvi~itH~~~~-~~~~d~~------------------------------~~l~~G~i~~ 364 (365)
T 3qf7_A 337 VIVFITHDREF-SEAFDRK------------------------------LRITGGVVVN 364 (365)
T ss_dssp EEEEEESCHHH-HTTCSCE------------------------------EEEETTEEC-
T ss_pred EEEEEecchHH-HHhCCEE------------------------------EEEECCEEEe
Confidence 99999999988 5678877 9999999975
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-29 Score=248.22 Aligned_cols=197 Identities=24% Similarity=0.292 Sum_probs=122.8
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC------------------------------
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL------------------------------ 141 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~------------------------------ 141 (382)
|+++| .++|++ +++|++.+| +++|+||||||||||+++|..++
T Consensus 6 L~i~n-fr~~~~-----~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~ 78 (322)
T 1e69_A 6 LYLKG-FKSFGR-----PSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSA 78 (322)
T ss_dssp EEEES-BTTBCS-----CEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEE
T ss_pred EEEeC-ceeecC-----CeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceE
Confidence 56677 345532 578888899 99999999999999999999654
Q ss_pred --------------------CCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCC----
Q 016804 142 --------------------APDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSK---- 197 (382)
Q Consensus 142 --------------------~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~---- 197 (382)
.+.+|+++++|++... ..-... ...+++.+|+..++...++.+++.........
T Consensus 79 ~v~~~f~~~~~~~~i~r~~~~~~~~~~~ing~~~~~-~~~~~~-~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~ 156 (322)
T 1e69_A 79 YVELVFEENGEEITVARELKRTGENTYYLNGSPVRL-KDIRDR-FAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSK 156 (322)
T ss_dssp EEEEEEESSSCEEEEEEEEETTSCEEEEETTEEECH-HHHHHH-TTTSSTTTTCCSEEEHHHHHHHHTC-----------
T ss_pred EEEEEEEeCCeEEEEEEEEEcCCceEEEECCcCccH-HHHHHH-HHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHH
Confidence 3345788999987521 000111 11255555554443222333333221100000
Q ss_pred --------CCHHHHHH---------------------HHHHHHHHcCC------cccccCCCCCCChHHHHHHHHHHHHh
Q 016804 198 --------MRDEQISE---------------------LVKENLAAVGL------KGVEDRLPSELSGGMKKRVALARSII 242 (382)
Q Consensus 198 --------~~~~~~~~---------------------~v~~~L~~~gL------~~~~~~~~~~LSGGqrQRVaIArAL~ 242 (382)
...+.+.+ .+.++++. |+ .+..++++.+||||||||++|||||+
T Consensus 157 ~~~~~~~~~~y~rv~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~ 235 (322)
T 1e69_A 157 HPTSLVPRGSYQRVNESFNRFISLLFFGGEGRLNIVSEAKSILDA-GFEISIRKPGRRDQKLSLLSGGEKALVGLALLFA 235 (322)
T ss_dssp ----------CHHHHHHHHHHHHHHHTSCEEEC---------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeccccccccC-CeEEEEecCccccCchhhCCHHHHHHHHHHHHHH
Confidence 00000111 11122322 22 12356678899999999999999996
Q ss_pred cCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 243 ~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
.- ...+|++|||||||++||+..+..+.++|+++. ++ .|+|++||+.+ +..+||++
T Consensus 236 ~~---~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~----------~~vi~~tH~~~-~~~~~d~~ 291 (322)
T 1e69_A 236 LM---EIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KH----------TQFIVITHNKI-VMEAADLL 291 (322)
T ss_dssp HT---TTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TT----------SEEEEECCCTT-GGGGCSEE
T ss_pred Hh---ccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CC----------CeEEEEECCHH-HHhhCceE
Confidence 20 001589999999999999999999999999984 34 49999999964 56788977
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.2e-30 Score=227.45 Aligned_cols=148 Identities=18% Similarity=0.217 Sum_probs=106.7
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCC-CCCCCHHHH
Q 016804 109 GVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAAL-FDSLTVREN 187 (382)
Q Consensus 109 ~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l-~~~lTV~en 187 (382)
||||++++||+++|+||||||||||+|++.+ |...+.+ ... .|+++|++.- +...+++++
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~~~---------d~~----~g~~~~~~~~~~~~~~~~~~ 61 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVISS---------DFC----RGLMSDDENDQTVTGAAFDV 61 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEEEH---------HHH----HHHHCSSTTCGGGHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEEcc---------HHH----HHHhcCcccchhhHHHHHHH
Confidence 6899999999999999999999999999652 2211111 111 2678887631 111122222
Q ss_pred HHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHH
Q 016804 188 VGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPI 267 (382)
Q Consensus 188 i~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~ 267 (382)
+.. ... .....|.....+. ....|||||||++||||++. +|++|+|||||++||+.
T Consensus 62 ~~~---------------~~~-~~~~~g~~~~~~~-~~~~s~g~~qrv~iAral~~-------~p~~lllDEPt~~Ld~~ 117 (171)
T 4gp7_A 62 LHY---------------IVS-KRLQLGKLTVVDA-TNVQESARKPLIEMAKDYHC-------FPVAVVFNLPEKVCQER 117 (171)
T ss_dssp HHH---------------HHH-HHHHTTCCEEEES-CCCSHHHHHHHHHHHHHTTC-------EEEEEEECCCHHHHHHH
T ss_pred HHH---------------HHH-HHHhCCCeEEEEC-CCCCHHHHHHHHHHHHHcCC-------cEEEEEEeCCHHHHHHH
Confidence 211 111 2233455544443 34569999999999999986 69999999999999999
Q ss_pred ----------------HHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHh
Q 016804 268 ----------------ASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA 309 (382)
Q Consensus 268 ----------------~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~ 309 (382)
....+.+.|++++++| .|+|++|||++++..+
T Consensus 118 ~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g----------~tvi~vtH~~~~~~~~ 165 (171)
T 4gp7_A 118 NKNRTDRQVEEYVIRKHTQQMKKSIKGLQREG----------FRYVYILNSPEEVEEV 165 (171)
T ss_dssp HHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHT----------CSEEEEECSHHHHHHE
T ss_pred HhcccCCCCCHHHHHHHHHHhhhhhhhHHhcC----------CcEEEEeCCHHHhhhh
Confidence 5589999999998777 5999999999998764
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4.7e-32 Score=247.79 Aligned_cols=177 Identities=14% Similarity=0.138 Sum_probs=127.1
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCC
Q 016804 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLT 183 (382)
Q Consensus 104 ~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lT 183 (382)
.++++| .+|++||+++|+||||||||||+|+|+|+++. |.+++.... ..... ..+..++|+||++.+|+.+|
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~----i~~~~~~~~-~~~~~-~~~~~i~~~~q~~~~~~~~~ 80 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN----LHFSVSATT-RAPRP-GEVDGVDYHFIDPTRFQQLI 80 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT----CEECCCEES-SCCCT-TCCBTTTBEECCHHHHHHHH
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc----eEEcccccc-cCCcc-cccCCCeeEecCHHHHHHHH
Confidence 457777 69999999999999999999999999999963 444442211 11111 11235899999998888888
Q ss_pred HHHHHHhhHh-----hcCCCCHHHHHHHHHHH------HHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCC
Q 016804 184 VRENVGFLLY-----ENSKMRDEQISELVKEN------LAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEP 252 (382)
Q Consensus 184 V~eni~~~~~-----~~~~~~~~~~~~~v~~~------L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P 252 (382)
+.+|+.+... ...+.+.++.++++.+. ++.+|+..+.++++.+|| ||+. +|
T Consensus 81 ~~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS-----------~l~~-------~p 142 (207)
T 1znw_A 81 DQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVT-----------VFLA-------PP 142 (207)
T ss_dssp HTTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEE-----------EEEE-------CS
T ss_pred hcCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEE-----------EEEE-------CC
Confidence 8887643210 11123445556666665 677788778888999999 8876 59
Q ss_pred cEEEEeCCCCCC----CHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccc
Q 016804 253 EVLLYDEPTAGL----DPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLF 316 (382)
Q Consensus 253 ~iLLLDEPtagL----D~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~ 316 (382)
++++|||||+++ |+..+.++.++++++.++ + .|+|+||||++++.++||||++|
T Consensus 143 ~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g----------~tvi~vtHdl~~~~~~~d~i~~l 201 (207)
T 1znw_A 143 SWQDLQARLIGRGTETADVIQRRLDTARIELAAQGD----------FDKVVVNRRLESACAELVSLLVG 201 (207)
T ss_dssp CHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGG----------SSEEEECSSHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcc----------CcEEEECCCHHHHHHHHHHHHHh
Confidence 999999999998 788999999999999754 4 59999999999999999999554
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.4e-31 Score=268.52 Aligned_cols=180 Identities=14% Similarity=0.188 Sum_probs=141.8
Q ss_pred eeeeEeeeEEEeCCc--------------------EEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhh
Q 016804 104 KHILRGVSFKIRHGE--------------------AVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE 163 (382)
Q Consensus 104 ~~iL~~vsl~i~~Ge--------------------~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~ 163 (382)
+.+|++|||+|++|+ ++||+||||||||||+|+|+|+.+|++|+|.++|.+..
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t------- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT------- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------
Confidence 568999999999999 99999999999999999999999999999999987531
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChH--HHHHHHHHHHH
Q 016804 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGG--MKKRVALARSI 241 (382)
Q Consensus 164 ~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGG--qrQRVaIArAL 241 (382)
+ .++++|++ .++.+|+.||+.++. . ...+.++++.+++.+.. ..+. ||+| ||||++||+||
T Consensus 109 --~--~~~v~q~~-~~~~ltv~D~~g~~~---~-------~~~~~~~L~~~~L~~~~-~~~~-lS~G~~~kqrv~la~aL 171 (413)
T 1tq4_A 109 --M--ERHPYKHP-NIPNVVFWDLPGIGS---T-------NFPPDTYLEKMKFYEYD-FFII-ISATRFKKNDIDIAKAI 171 (413)
T ss_dssp --C--CCEEEECS-SCTTEEEEECCCGGG---S-------SCCHHHHHHHTTGGGCS-EEEE-EESSCCCHHHHHHHHHH
T ss_pred --e--eEEecccc-ccCCeeehHhhcccc---h-------HHHHHHHHHHcCCCccC-CeEE-eCCCCccHHHHHHHHHH
Confidence 1 27899985 577789999886642 1 12356789999987653 3334 9999 99999999999
Q ss_pred hcCCCC---CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-----HcCCCCCCCCCCceEEEEEccCHHH--HHHhhc
Q 016804 242 IFDNTK---ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVH-----KKGENGLANPGNIASYVVVTHQHST--IRRAVD 311 (382)
Q Consensus 242 ~~~~~~---~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~-----~~g~~~~~~~~~~~tiIivTHdl~~--~~~~aD 311 (382)
++.... ...+|++++|||||+|||+..+.++++.|+++. +.|. +. ..+++++||+++. +.++||
T Consensus 172 ~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~-----~~-~~iiliSsh~l~~~~~e~L~d 245 (413)
T 1tq4_A 172 SMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGI-----AE-PPIFLLSNKNVCHYDFPVLMD 245 (413)
T ss_dssp HHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTC-----SS-CCEEECCTTCTTSTTHHHHHH
T ss_pred HhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCC-----CC-CcEEEEecCcCCccCHHHHHH
Confidence 860000 000499999999999999999999999999985 2220 00 1478999999988 999999
Q ss_pred hh
Q 016804 312 RL 313 (382)
Q Consensus 312 rv 313 (382)
++
T Consensus 246 ~I 247 (413)
T 1tq4_A 246 KL 247 (413)
T ss_dssp HH
T ss_pred HH
Confidence 88
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-29 Score=245.25 Aligned_cols=168 Identities=17% Similarity=0.174 Sum_probs=129.4
Q ss_pred EEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCC----hhhhccceEEEE
Q 016804 97 VYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS----DEEISGLRIGLV 172 (382)
Q Consensus 97 vs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~----~~~~~~~~Ig~V 172 (382)
+...++....++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++..... ..+..+.+|+|+
T Consensus 80 l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v 159 (302)
T 3b9q_A 80 VLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIV 159 (302)
T ss_dssp HHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEE
Confidence 3334444444567899999999999999999999999999999999999999999987643110 011112359999
Q ss_pred ecCCC-CCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCC
Q 016804 173 FQSAA-LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (382)
Q Consensus 173 ~Q~~~-l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~ 251 (382)
+|++. +++.+|+++|+.++... +.. ..+++.+|+.+..++++.+|| |||++|||||+. +
T Consensus 160 ~q~~~~~~~~~~v~e~l~~~~~~--~~d--------~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~-------~ 219 (302)
T 3b9q_A 160 VAEGDKAKAATVLSKAVKRGKEE--GYD--------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSG-------A 219 (302)
T ss_dssp CCC--CCCHHHHHHHHHHHHHHT--TCS--------EEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTT-------C
T ss_pred EecCCccCHHHHHHHHHHHHHHc--CCc--------chHHhcCCCCcchhHHHHHHH---HHHHHHHHhhcc-------C
Confidence 99998 88889999999875421 111 135678888888888899999 999999999986 6
Q ss_pred Cc--EEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcc
Q 016804 252 PE--VLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTH 301 (382)
Q Consensus 252 P~--iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTH 301 (382)
|+ +|+|| ||+|||+..+ ++++.+. + .|+|++||
T Consensus 220 P~e~lLvLD-ptsglD~~~~------~~~~~~~~g----------~t~iiiTh 255 (302)
T 3b9q_A 220 PNEILLVLD-GNTGLNMLPQ------AREFNEVVG----------ITGLILTK 255 (302)
T ss_dssp CSEEEEEEE-GGGGGGGHHH------HHHHHHHTC----------CCEEEEEC
T ss_pred CCeeEEEEe-CCCCcCHHHH------HHHHHHhcC----------CCEEEEeC
Confidence 99 99999 9999999865 3456543 4 59999999
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.93 E-value=4.3e-28 Score=218.82 Aligned_cols=142 Identities=14% Similarity=0.131 Sum_probs=104.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKM 198 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~ 198 (382)
.++|+||||||||||+|+|+|++. |.++|.+....... ..+.++||++|++ ++.+|+ +.. ...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~--~~~~~ig~~~~~~------~~~~~~-~~~---~~~ 64 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDP--ETKKRTGFRIITT------EGKKKI-FSS---KFF 64 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC--------CCEEEEEET------TCCEEE-EEE---TTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccc--cccceeEEEeecC------cHHHHH-HHh---hcC
Confidence 589999999999999999999985 55667543211000 1133699999986 222332 110 000
Q ss_pred CHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHH-----HhcCCCCCCCCCcEEEEeC--CCCCCCHHHHHH
Q 016804 199 RDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARS-----IIFDNTKESVEPEVLLYDE--PTAGLDPIASTV 271 (382)
Q Consensus 199 ~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArA-----L~~~~~~~a~~P~iLLLDE--PtagLD~~~~~~ 271 (382)
. -....++++.+||||||||++|||| |+. +|++||||| ||++||+..+..
T Consensus 65 ~----------------~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~-------~p~llilDEigp~~~ld~~~~~~ 121 (178)
T 1ye8_A 65 T----------------SKKLVGSYGVNVQYFEELAIPILERAYREAKKD-------RRKVIIIDEIGKMELFSKKFRDL 121 (178)
T ss_dssp C----------------CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHC-------TTCEEEECCCSTTGGGCHHHHHH
T ss_pred C----------------ccccccccccCcCHHHHHHHHHHhhcccccccc-------CCCEEEEeCCCCcccCCHHHHHH
Confidence 0 0135678899999999999999996 886 699999999 999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCCCceEEEEEc---cCHHHHHHhhchh
Q 016804 272 VEDLIRSVHKKGENGLANPGNIASYVVVT---HQHSTIRRAVDRL 313 (382)
Q Consensus 272 l~~lL~~l~~~g~~~~~~~~~~~tiIivT---Hdl~~~~~~aDrv 313 (382)
+.+.+++ .+ .|+|++| ||++++..+|||-
T Consensus 122 l~~~l~~---~~----------~~~i~~~H~~h~~~~~~~i~~r~ 153 (178)
T 1ye8_A 122 VRQIMHD---PN----------VNVVATIPIRDVHPLVKEIRRLP 153 (178)
T ss_dssp HHHHHTC---TT----------SEEEEECCSSCCSHHHHHHHTCT
T ss_pred HHHHHhc---CC----------CeEEEEEccCCCchHHHHHHhcC
Confidence 8888865 23 4788888 5999999999974
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.93 E-value=9.5e-30 Score=259.66 Aligned_cols=196 Identities=15% Similarity=0.177 Sum_probs=152.9
Q ss_pred ceEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCE---ECCCCC---Chh
Q 016804 90 VLIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGR---KRAGLI---SDE 162 (382)
Q Consensus 90 ~~I~~~nvs~~yg-~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~---~i~~~~---~~~ 162 (382)
++++++++++.|+ +..+|+++ |+|.+||+++|+||||||||||+++|+|+.+|++|.|.++|+ ++.... ...
T Consensus 130 ~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~ 208 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGP 208 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHH
T ss_pred CceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccc
Confidence 4588999999997 67899999 999999999999999999999999999999999999999997 332110 001
Q ss_pred hhccceEEEEecC-CCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHH
Q 016804 163 EISGLRIGLVFQS-AALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSI 241 (382)
Q Consensus 163 ~~~~~~Ig~V~Q~-~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL 241 (382)
...++.|+|++|+ ..+++.+|+.+|+.+....+... .-....+.+ .+..||+|| |||+||
T Consensus 209 ~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~--------------~~~v~~~ld-~l~~lS~g~-qrvslA--- 269 (438)
T 2dpy_A 209 DGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDR--------------GQHVLLIMD-SLTRYAMAQ-REIALA--- 269 (438)
T ss_dssp HHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTT--------------TCEEEEEEE-CHHHHHHHH-HHHHHH---
T ss_pred cccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhC--------------CCCHHHHHH-hHHHHHHHH-HHHHHH---
Confidence 1123469999995 55677789999998754221100 001112222 267899999 999999
Q ss_pred hcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH---c-CCCCCCCCCCce-----EEEEEccCHHHHHHhhch
Q 016804 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHK---K-GENGLANPGNIA-----SYVVVTHQHSTIRRAVDR 312 (382)
Q Consensus 242 ~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~---~-g~~~~~~~~~~~-----tiIivTHdl~~~~~~aDr 312 (382)
+. +|++ |+|||+..+..+.+++.++.+ + | . |++++|||++ ..+||+
T Consensus 270 l~-------~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~G----------siT~~~tVlv~tHdl~--~~iad~ 324 (438)
T 2dpy_A 270 IG-------EPPA------TKGYPPSVFAKLPALVERAGNGIHGGG----------SITAFYTVLTEGDDQQ--DPIADS 324 (438)
T ss_dssp TT-------CCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSC----------EEEEEEEEECSSSCSC--CHHHHH
T ss_pred hC-------CCcc------cccCCHHHHHHHHHHHHHHHhccCCCC----------cccceeEEEEeCCCcc--chhhce
Confidence 44 6888 999999999999999999865 2 2 3 8999999999 678999
Q ss_pred hccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEeccccc
Q 016804 313 LCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEF 360 (382)
Q Consensus 313 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~ 360 (382)
+ ++|.+|+|+..+++.+.
T Consensus 325 v------------------------------~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 325 A------------------------------RAILDGHIVLSRRLAEA 342 (438)
T ss_dssp H------------------------------HHHSSEEEEECHHHHHT
T ss_pred E------------------------------EEEeCcEEEEeCCHHHc
Confidence 9 77889999998877664
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.6e-30 Score=237.62 Aligned_cols=180 Identities=10% Similarity=0.078 Sum_probs=122.2
Q ss_pred eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCC-
Q 016804 105 HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLT- 183 (382)
Q Consensus 105 ~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lT- 183 (382)
..|+||||+|++|++++|+||||||||||+++|+|++ | |+|.+ |.++........ .+..++|+||++.+|+.++
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~ 85 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREK-EKEGVDYYFIDKTIFEDKLK 85 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSS-CCBTTTBEECCHHHHHHHHH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcc-cccCCeEEECCHHHHHHhhh
Confidence 4699999999999999999999999999999999999 6 99999 776533211111 1235899999988776443
Q ss_pred HHHHHHhhHh--hcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHH-----HHHHhcCCCCCCCCCcEEE
Q 016804 184 VRENVGFLLY--ENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVAL-----ARSIIFDNTKESVEPEVLL 256 (382)
Q Consensus 184 V~eni~~~~~--~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaI-----ArAL~~~~~~~a~~P~iLL 256 (382)
+.+++.+... ...+.+. +.++++++...+. ..+ .+|||||+||++| ||+|+. .|++++
T Consensus 86 ~~~~l~~~~~~~~~~g~~~----~~i~~~l~~~~~~-il~---~~lsggq~qR~~i~~~~~~~~ll~-------~~~~~~ 150 (218)
T 1z6g_A 86 NEDFLEYDNYANNFYGTLK----SEYDKAKEQNKIC-LFE---MNINGVKQLKKSTHIKNALYIFIK-------PPSTDV 150 (218)
T ss_dssp TTCEEEEEEETTEEEEEEH----HHHHHHHHTTCEE-EEE---ECHHHHHHHTTCSSCCSCEEEEEE-------CSCHHH
T ss_pred ccchhhhhhcccccCCCcH----HHHHHHHhCCCcE-EEE---ecHHHHHHHHHHhcCCCcEEEEEe-------CcCHHH
Confidence 1122211100 0111122 2355666654432 222 6899999999999 899996 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHc------CCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 257 YDEPTAGLDPIASTVVEDLIRSVHKK------GENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 257 LDEPtagLD~~~~~~l~~lL~~l~~~------g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
|||||+++|..+...+.+.|.++.++ .. .+.|+++||++++...++++
T Consensus 151 Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~---------~d~iiv~~~~~ea~~~~~~i 204 (218)
T 1z6g_A 151 LLSRLLTRNTENQEQIQKRMEQLNIELHEANLLN---------FNLSIINDDLTLTYQQLKNY 204 (218)
T ss_dssp HHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSC---------CSEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccC---------CCEEEECCCHHHHHHHHHHH
Confidence 99999999999999999888877543 11 47899999999999999988
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.7e-31 Score=257.82 Aligned_cols=208 Identities=15% Similarity=0.109 Sum_probs=147.5
Q ss_pred hhhhhhhccCCCcchhhhHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCcceEEEEeEEEE
Q 016804 21 SRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRNVYKS 100 (382)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvs~~ 100 (382)
.++..++.+. ..+.++....+|+......|+...... . .......+|+++||+|+
T Consensus 56 ~~v~~~~~~~-----~~~~~a~~a~~ri~~~l~~~~~~~~~~-------~-------------~~~~~~~~i~~~~vs~~ 110 (305)
T 2v9p_A 56 KHVKDCATMV-----RHYLRAETQALSMPAYIKARCKLATGE-------G-------------SWKSILTFFNYQNIELI 110 (305)
T ss_dssp HHHHHHHHHH-----HHHHHHHHHHSCHHHHHHHHHHHCCSS-------C-------------CTHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHhccccccCCC-------C-------------cccccCCeEEEEEEEEE
Confidence 4555555555 566677777788887776553211000 0 00001124889999999
Q ss_pred eCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCC
Q 016804 101 FGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFD 180 (382)
Q Consensus 101 yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~ 180 (382)
|+ .++|+++||+|++|++++|+||||||||||+++|+|++ +|+| ++|++|++.+|+
T Consensus 111 y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I--------------------~~~v~q~~~lf~ 166 (305)
T 2v9p_A 111 TF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV--------------------LSFANHKSHFWL 166 (305)
T ss_dssp HH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE--------------------ECGGGTTSGGGG
T ss_pred cC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE--------------------EEEecCcccccc
Confidence 98 77999999999999999999999999999999999999 7887 245788888887
Q ss_pred CCCHHH-HHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeC
Q 016804 181 SLTVRE-NVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDE 259 (382)
Q Consensus 181 ~lTV~e-ni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDE 259 (382)
.|+++ |+.++.. ... .+.+.++.+ |.+..+ +..|||||||| ||||++ +|+|||
T Consensus 167 -~ti~~~ni~~~~~----~~~-----~~~~~i~~~-L~~gld--g~~LSgGqkQR---ARAll~-------~p~iLl--- 220 (305)
T 2v9p_A 167 -ASLADTRAALVDD----ATH-----ACWRYFDTY-LRNALD--GYPVSIDRKHK---AAVQIK-------APPLLV--- 220 (305)
T ss_dssp -GGGTTCSCEEEEE----ECH-----HHHHHHHHT-TTGGGG--TCCEECCCSSC---CCCEEC-------CCCEEE---
T ss_pred -ccHHHHhhccCcc----ccH-----HHHHHHHHH-hHccCC--ccCcCHHHHHH---HHHHhC-------CCCEEE---
Confidence 48887 8876421 111 234455554 444444 78999999999 999997 599999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccCCCCccccc
Q 016804 260 PTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFF 339 (382)
Q Consensus 260 PtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (382)
|++||+.++..+. . . ||+++.+ ..|
T Consensus 221 -Ts~LD~~~~~~i~--------~-----------l-----tH~~~~~-~~a----------------------------- 245 (305)
T 2v9p_A 221 -TSNIDVQAEDRYL--------Y-----------L-----HSRVQTF-RFE----------------------------- 245 (305)
T ss_dssp -EESSCSTTCGGGG--------G-----------G-----TTTEEEE-ECC-----------------------------
T ss_pred -ECCCCHHHHHHHH--------H-----------H-----hCCHHHH-HhC-----------------------------
Confidence 9999999887664 1 1 6776543 244
Q ss_pred ccEEEEEeCCeEEEEeccccc
Q 016804 340 IYRLIFLYEGKIVWQGMTHEF 360 (382)
Q Consensus 340 ~~~ii~l~~G~i~~~g~~~~~ 360 (382)
|+| +|++|+|++.|+++++
T Consensus 246 -D~i-vl~~G~iv~~g~~~el 264 (305)
T 2v9p_A 246 -QPC-TDESGEQPFNITDADW 264 (305)
T ss_dssp -CCC-CCC---CCCCCCHHHH
T ss_pred -CEE-EEeCCEEEEeCCHHHH
Confidence 466 7889999999977776
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-27 Score=238.75 Aligned_cols=157 Identities=17% Similarity=0.170 Sum_probs=126.7
Q ss_pred EeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCC----hhhhccceEEEEecCCC-CCCCC
Q 016804 108 RGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS----DEEISGLRIGLVFQSAA-LFDSL 182 (382)
Q Consensus 108 ~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~----~~~~~~~~Ig~V~Q~~~-l~~~l 182 (382)
..+||++++|++++|+||||||||||++.|+|+++|++|+|.++|.++..... ..+..+.+|+|++|++. +++.+
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 56899999999999999999999999999999999999999999988643110 01111235999999998 88889
Q ss_pred CHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCc--EEEEeCC
Q 016804 183 TVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPE--VLLYDEP 260 (382)
Q Consensus 183 TV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~--iLLLDEP 260 (382)
|+++|+.++... ... ..+++.+|+.+..++++.+|| |||++|||||+. +|+ +|+|| |
T Consensus 228 tv~e~l~~~~~~--~~d--------~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~-------~P~e~lLvLD-p 286 (359)
T 2og2_A 228 VLSKAVKRGKEE--GYD--------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSG-------APNEILLVLD-G 286 (359)
T ss_dssp HHHHHHHHHHHT--TCS--------EEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTT-------CCSEEEEEEE-G
T ss_pred hHHHHHHHHHhC--CCH--------HHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhc-------CCCceEEEEc-C
Confidence 999999876421 111 124677888888888899999 999999999986 699 99999 9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcc
Q 016804 261 TAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTH 301 (382)
Q Consensus 261 tagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTH 301 (382)
|+|||+..+ ++++.+. + .|+|++||
T Consensus 287 ttglD~~~~------~~~~~~~~g----------~t~iiiTh 312 (359)
T 2og2_A 287 NTGLNMLPQ------AREFNEVVG----------ITGLILTK 312 (359)
T ss_dssp GGGGGGHHH------HHHHHHHTC----------CCEEEEES
T ss_pred CCCCCHHHH------HHHHHHhcC----------CeEEEEec
Confidence 999999865 2455543 4 59999999
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.92 E-value=8.7e-27 Score=229.41 Aligned_cols=138 Identities=17% Similarity=0.226 Sum_probs=110.4
Q ss_pred EEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEe
Q 016804 94 CRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVF 173 (382)
Q Consensus 94 ~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~ 173 (382)
+++++| | .++++++||.+++|++++|+||||||||||+++|+|+++|++|.|+++|.+.... .. .+..+++++
T Consensus 151 ~~~v~f-y--~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~--~~--~~~~i~~~~ 223 (330)
T 2pt7_A 151 YNLLDN-K--EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVF--KH--HKNYTQLFF 223 (330)
T ss_dssp TTTSTT-H--HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCC--SS--CSSEEEEEC
T ss_pred cCchhh-H--HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeecccc--cc--chhEEEEEe
Confidence 334444 4 3489999999999999999999999999999999999999999999998642111 10 122466654
Q ss_pred cCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCc
Q 016804 174 QSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPE 253 (382)
Q Consensus 174 Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~ 253 (382)
| |||+||++|||||.. +|+
T Consensus 224 g------------------------------------------------------gg~~~r~~la~aL~~-------~p~ 242 (330)
T 2pt7_A 224 G------------------------------------------------------GNITSADCLKSCLRM-------RPD 242 (330)
T ss_dssp B------------------------------------------------------TTBCHHHHHHHHTTS-------CCS
T ss_pred C------------------------------------------------------CChhHHHHHHHHhhh-------CCC
Confidence 1 899999999999986 699
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccc
Q 016804 254 VLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQ 317 (382)
Q Consensus 254 iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~ 317 (382)
+|||||||+ .++.++|+.+...+ .|+|++||+.+ +...|||+++|.
T Consensus 243 ilildE~~~-------~e~~~~l~~~~~g~----------~tvi~t~H~~~-~~~~~dri~~l~ 288 (330)
T 2pt7_A 243 RIILGELRS-------SEAYDFYNVLCSGH----------KGTLTTLHAGS-SEEAFIRLANMS 288 (330)
T ss_dssp EEEECCCCS-------THHHHHHHHHHTTC----------CCEEEEEECSS-HHHHHHHHHHHH
T ss_pred EEEEcCCCh-------HHHHHHHHHHhcCC----------CEEEEEEcccH-HHHHhhhheehh
Confidence 999999998 24567788776432 47999999998 778899997765
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-27 Score=228.93 Aligned_cols=148 Identities=21% Similarity=0.241 Sum_probs=97.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKM 198 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~ 198 (382)
.++|+||||||||||+|+|+|+..|++|+|.++|+++... ..+..++|++|++.+++.+||.||+.|+.......
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~-----~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~ 78 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKT-----VEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNEN 78 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCC-----CSCCEEEESCC----CCEEEEECCCC--CCSBCTT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcc-----eeeeeeEEEeecCCCcCCceEEechhhhhhcccHH
Confidence 4899999999999999999999999999999999876321 12346999999999999999999998865322211
Q ss_pred CHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 016804 199 RDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRS 278 (382)
Q Consensus 199 ~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~ 278 (382)
.. +.+.+.++ ..+.++++.+||||||||+++|||++ .++++|||+++||+.. .+++++
T Consensus 79 ~~----~~i~~~~~----~~~~~~~~~~LS~G~~qrv~iaRal~----------~lllldep~~gL~~lD----~~~l~~ 136 (270)
T 3sop_A 79 CW----EPIEKYIN----EQYEKFLKEEVNIARKKRIPDTRVHC----------CLYFISPTGHSLRPLD----LEFMKH 136 (270)
T ss_dssp CS----HHHHHHHH----HHHHHHHHHHSCTTCCSSCCCCSCCE----------EEEEECCCSSSCCHHH----HHHHHH
T ss_pred HH----HHHHHHHH----HHHHhhhHHhcCcccchhhhhheeee----------eeEEEecCCCcCCHHH----HHHHHH
Confidence 11 22333333 45667778899999999999999985 4999999999999987 456666
Q ss_pred HHHcCCCCCCCCCCceEEEEEccCHH
Q 016804 279 VHKKGENGLANPGNIASYVVVTHQHS 304 (382)
Q Consensus 279 l~~~g~~~~~~~~~~~tiIivTHdl~ 304 (382)
+.+. .++|+|.|..+
T Consensus 137 L~~~-----------~~vI~Vi~K~D 151 (270)
T 3sop_A 137 LSKV-----------VNIIPVIAKAD 151 (270)
T ss_dssp HHTT-----------SEEEEEETTGG
T ss_pred HHhc-----------CcEEEEEeccc
Confidence 6554 27777777654
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=7.9e-29 Score=242.42 Aligned_cols=173 Identities=16% Similarity=0.151 Sum_probs=132.5
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEE-----------------------EeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFK-----------------------IRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE 147 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~-----------------------i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~ 147 (382)
.|+++||++.|+ ++++++++. +++|+++||+||||||||||+++|+|+++|+.|.
T Consensus 43 ~i~~~~v~~~y~--p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~ 120 (312)
T 3aez_A 43 QIDLLEVEEVYL--PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWDHH 120 (312)
T ss_dssp CCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC
T ss_pred eEEeeehhhhhh--hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccCCC
Confidence 489999999995 677777764 8999999999999999999999999999997553
Q ss_pred EEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCC
Q 016804 148 VYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSEL 227 (382)
Q Consensus 148 I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~L 227 (382)
.++++|+|++.+++. |+.||+.+.. ..+.......+.+.+.++.++ .+..+.++.+|
T Consensus 121 -------------------~~v~~v~qd~~~~~~-t~~e~~~~~~--~~g~~~~~d~~~~~~~L~~l~-~~~~~~~~~~l 177 (312)
T 3aez_A 121 -------------------PRVDLVTTDGFLYPN-AELQRRNLMH--RKGFPESYNRRALMRFVTSVK-SGSDYACAPVY 177 (312)
T ss_dssp -------------------CCEEEEEGGGGBCCH-HHHHHTTCTT--CTTSGGGBCHHHHHHHHHHHH-TTCSCEEEEEE
T ss_pred -------------------CeEEEEecCccCCcc-cHHHHHHHHH--hcCCChHHHHHHHHHHHHHhC-CCcccCCcccC
Confidence 158999999999987 9999986532 112222222345677888887 55556778899
Q ss_pred ChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHH-
Q 016804 228 SGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTI- 306 (382)
Q Consensus 228 SGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~- 306 (382)
||||+||+++|||++. +|+|||||||++.+|+.. ..+.+.- -..|+|+|+.+..
T Consensus 178 S~G~~qRv~~a~al~~-------~p~ilIlDep~~~~d~~~--------~~l~~~~----------D~~I~V~a~~~~~~ 232 (312)
T 3aez_A 178 SHLHYDIIPGAEQVVR-------HPDILILEGLNVLQTGPT--------LMVSDLF----------DFSLYVDARIEDIE 232 (312)
T ss_dssp ETTTTEEEEEEEEEEC-------SCSEEEEECTTTTCCCSS--------CCGGGGC----------SEEEEEEECHHHHH
T ss_pred ChhhhhhhhhHHHhcc-------CCCEEEECCccccCCcch--------HHHHHhc----------CcEEEEECCHHHHH
Confidence 9999999999999996 599999999999998621 1122221 1468888888664
Q ss_pred HHhhchh
Q 016804 307 RRAVDRL 313 (382)
Q Consensus 307 ~~~aDrv 313 (382)
.++.+|.
T Consensus 233 ~R~i~R~ 239 (312)
T 3aez_A 233 QWYVSRF 239 (312)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4456665
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.6e-25 Score=245.77 Aligned_cols=162 Identities=19% Similarity=0.245 Sum_probs=122.4
Q ss_pred cceEEEEe-----EEEEe-CCeeeeEeeeEEEeC-------CcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEEC
Q 016804 89 DVLIDCRN-----VYKSF-GEKHILRGVSFKIRH-------GEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKR 155 (382)
Q Consensus 89 ~~~I~~~n-----vs~~y-g~~~iL~~vsl~i~~-------Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i 155 (382)
.++|+++| |++.| ++..+++|++|++++ |++++|+||||||||||||+| |++.+-
T Consensus 748 ~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~----------- 815 (1022)
T 2o8b_B 748 PPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM----------- 815 (1022)
T ss_dssp CCCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH-----------
T ss_pred CceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH-----------
Confidence 45799999 99999 677899999999987 999999999999999999999 998640
Q ss_pred CCCCChhhhccceEE-EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHH
Q 016804 156 AGLISDEEISGLRIG-LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKR 234 (382)
Q Consensus 156 ~~~~~~~~~~~~~Ig-~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQR 234 (382)
. ++| ||||++. .+||.++|.. ++|+.+...+..+++|+++++
T Consensus 816 ---------a--qiG~~Vpq~~~---~l~v~d~I~~----------------------rig~~d~~~~~~stf~~em~~- 858 (1022)
T 2o8b_B 816 ---------A--QMGCYVPAEVC---RLTPIDRVFT----------------------RLGASDRIMSGESTFFVELSE- 858 (1022)
T ss_dssp ---------H--TTTCCEESSEE---EECCCSBEEE----------------------ECC---------CHHHHHHHH-
T ss_pred ---------h--heeEEeccCcC---CCCHHHHHHH----------------------HcCCHHHHhhchhhhHHHHHH-
Confidence 1 355 9999863 3566666521 123333333445678887775
Q ss_pred HHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHH-HHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhch
Q 016804 235 VALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAS-TVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDR 312 (382)
Q Consensus 235 VaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~-~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDr 312 (382)
+++|++++. +|+++||||||+|+|+... ..++++|+.+.++ | .++|++||+++.+..++|+
T Consensus 859 ~a~al~la~-------~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g----------~~vl~~TH~~el~~~~~d~ 921 (1022)
T 2o8b_B 859 TASILMHAT-------AHSLVLVDELGRGTATFDGTAIANAVVKELAETIK----------CRTLFSTHYHSLVEDYSQN 921 (1022)
T ss_dssp HHHHHHHCC-------TTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSC----------CEEEEECCCHHHHHHTSSC
T ss_pred HHHHHHhCC-------CCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCC----------CEEEEEeCCHHHHHHhCCc
Confidence 999999986 6999999999999999884 5578999999876 5 5999999999999999999
Q ss_pred hccc
Q 016804 313 LCLF 316 (382)
Q Consensus 313 v~~~ 316 (382)
+.++
T Consensus 922 ~~v~ 925 (1022)
T 2o8b_B 922 VAVR 925 (1022)
T ss_dssp SSEE
T ss_pred ceee
Confidence 8553
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.8e-26 Score=227.49 Aligned_cols=195 Identities=18% Similarity=0.208 Sum_probs=142.9
Q ss_pred ceEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCC------CChh
Q 016804 90 VLIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGL------ISDE 162 (382)
Q Consensus 90 ~~I~~~nvs~~yg-~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~------~~~~ 162 (382)
++++++++++.|+ +..+|+++ |+|.+||+++|+||||||||||+++|+|+.+|+.|.|.+.|++.... ...
T Consensus 44 ~~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~- 121 (347)
T 2obl_A 44 DPLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQ- 121 (347)
T ss_dssp CSTTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCH-
T ss_pred CCeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhh-
Confidence 4688999999998 67899999 99999999999999999999999999999999999999998642110 001
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc-cccCCCCCCChHHHHHHHHHHHH
Q 016804 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALARSI 241 (382)
Q Consensus 163 ~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~-~~~~~~~~LSGGqrQRVaIArAL 241 (382)
...+..+.+++|.. .+..+.+...... -.+.+.+...+-+- ..-..+.+||+|| |||++|
T Consensus 122 ~~~~~~v~~~~~~~-----~~~~~r~~~~~~~----------~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la--- 182 (347)
T 2obl_A 122 STLSKCVLVVTTSD-----RPALERMKAAFTA----------TTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA--- 182 (347)
T ss_dssp HHHTTEEEEEECTT-----SCHHHHHHHHHHH----------HHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---
T ss_pred hhhhceEEEEECCC-----CCHHHHHHHHHHH----------HHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---
Confidence 11123488888753 2333433221100 00111211112110 0114578999999 999999
Q ss_pred hcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-c-CCCCCCCCCCce-----EEEEEccCHHHHHHhhchhc
Q 016804 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHK-K-GENGLANPGNIA-----SYVVVTHQHSTIRRAVDRLC 314 (382)
Q Consensus 242 ~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~-~-g~~~~~~~~~~~-----tiIivTHdl~~~~~~aDrv~ 314 (382)
+. +|++ |+|||+.....+.++++++.+ + | . ||+++|||++ ..+||++
T Consensus 183 l~-------~p~~------t~Gldp~~~~~l~~ller~~~~~~G----------siT~~~tVl~~thdl~--~~i~d~v- 236 (347)
T 2obl_A 183 SG-------EPDV------RGGFPPSVFSSLPKLLERAGPAPKG----------SITAIYTVLLESDNVN--DPIGDEV- 236 (347)
T ss_dssp TT-------CCCC------BTTBCHHHHHHHHHHHTTCEECSSS----------EEEEEEEEECCSSCCC--CHHHHHH-
T ss_pred cC-------CCCc------ccCCCHHHHHHHHHHHHHHhCCCCC----------CeeeEEEEEEeCCCCC--Chhhhhe-
Confidence 33 5887 999999999999999999864 2 3 5 8999999998 6789999
Q ss_pred cccccccchheehhccCCCCcccccccEEEEEeCCeEEEEeccccc
Q 016804 315 LFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEF 360 (382)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~ 360 (382)
++|.+|+|+.+++..+.
T Consensus 237 -----------------------------~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 237 -----------------------------RSILDGHIVLTRELAEE 253 (347)
T ss_dssp -----------------------------HHHCSEEEEBCHHHHTT
T ss_pred -----------------------------EEeeCcEEEEeCCHHHc
Confidence 77889999999877764
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.90 E-value=8.5e-24 Score=210.71 Aligned_cols=84 Identities=29% Similarity=0.178 Sum_probs=73.6
Q ss_pred CCC-CCChHHHHHHHHHHHHh---------cCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCC
Q 016804 223 LPS-ELSGGMKKRVALARSII---------FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGN 292 (382)
Q Consensus 223 ~~~-~LSGGqrQRVaIArAL~---------~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~ 292 (382)
++. .||||||||++||++|+ . +|+||||||||++||+..+..+.+.|.++. +
T Consensus 261 ~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~-------~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~-q---------- 322 (359)
T 2o5v_A 261 PASDYASRGEGRTVALALRRAELELLREKFG-------EDPVLLLDDFTAELDPHRRQYLLDLAASVP-Q---------- 322 (359)
T ss_dssp EHHHHCCHHHHHHHHHHHHHHHHHHHHHHHS-------SCCEEEECCGGGCCCHHHHHHHHHHHHHSS-E----------
T ss_pred chhhhCCHHHHHHHHHHHHHHHhhhhhhccC-------CCCEEEEeCccccCCHHHHHHHHHHHHhcC-c----------
Confidence 445 79999999999999999 5 599999999999999999999999998874 2
Q ss_pred ceEEEEEccCHHHHHHhhchhccccccccchheehhccCCCCcccccccEEEEEeCCeEEEEeccccc
Q 016804 293 IASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEF 360 (382)
Q Consensus 293 ~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~ 360 (382)
|+|++||. +. .||++ ++|++|+|++.|+++++
T Consensus 323 --t~i~~th~-~~---~~~~i------------------------------~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 323 --AIVTGTEL-AP---GAALT------------------------------LRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp --EEEEESSC-CT---TCSEE------------------------------EEEETTEEEECCCTTTS
T ss_pred --EEEEEEec-cc---cCCEE------------------------------EEEECCEEEecCCHHHH
Confidence 89999994 43 67766 99999999999988776
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.1e-27 Score=245.17 Aligned_cols=181 Identities=15% Similarity=0.130 Sum_probs=126.4
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeE-EEeCCcEEEEEcCCCccHHHHHHH--HHcCCCCCccEEEECCEECCCCCChhhhcc
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSF-KIRHGEAVGIIGPSGTGKSTILKI--IAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl-~i~~Ge~vaLiGpNGaGKSTLLkl--I~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~ 166 (382)
++++.+++.+.+++.++|++||| .|++||+++|+||||||||||+++ ++|+.+|++|.|+++|++.. .......
T Consensus 11 ~~~~~~~~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~---~~~~~~~ 87 (525)
T 1tf7_A 11 NNSEHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETP---QDIIKNA 87 (525)
T ss_dssp ---CCSSCCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCH---HHHHHHH
T ss_pred CCccccccccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCH---HHHHHHH
Confidence 34666777766667889999999 999999999999999999999999 78999999999999997621 1111122
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCC
Q 016804 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT 246 (382)
Q Consensus 167 ~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~ 246 (382)
.++||+||++...+ |+.+ .. . ...+ ...++++.+++.++ .-.++++|-.
T Consensus 88 ~~~g~~~q~~~~~~------~l~~-~~-~--~~~~----~~~~~l~~~~l~~~--------------~~~~~~~LS~--- 136 (525)
T 1tf7_A 88 RSFGWDLAKLVDEG------KLFI-LD-A--SPDP----EGQEVVGGFDLSAL--------------IERINYAIQK--- 136 (525)
T ss_dssp GGGTCCHHHHHHTT------SEEE-EE-C--CCCS----SCCSCCSSHHHHHH--------------HHHHHHHHHH---
T ss_pred HHcCCChHHhhccC------cEEE-Ee-c--Cccc----chhhhhcccCHHHH--------------HHHHHHHHHH---
Confidence 35899999865321 1111 00 0 0000 00112222223333 3344444432
Q ss_pred CCCCCCcEEEEeCCCC-----CCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHH---------HHhhch
Q 016804 247 KESVEPEVLLYDEPTA-----GLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTI---------RRAVDR 312 (382)
Q Consensus 247 ~~a~~P~iLLLDEPta-----gLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~---------~~~aDr 312 (382)
.+|++++|||||+ +||+..+..+.++++++++.| +|+|++||+++++ ..+||+
T Consensus 137 ---g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g----------~tvl~itH~~~~~~~~~~~~i~~~laD~ 203 (525)
T 1tf7_A 137 ---YRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIG----------ATTVMTTERIEEYGPIARYGVEEFVSDN 203 (525)
T ss_dssp ---HTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHT----------CEEEEEEECSSSSSCSSTTSCHHHHCSE
T ss_pred ---cCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCC----------CEEEEEecCCCCccccccccceeeeeeE
Confidence 1589999999998 469999999999999998876 5999999999984 566999
Q ss_pred hcccc
Q 016804 313 LCLFQ 317 (382)
Q Consensus 313 v~~~~ 317 (382)
|++|+
T Consensus 204 vi~L~ 208 (525)
T 1tf7_A 204 VVILR 208 (525)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 97776
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.1e-24 Score=233.84 Aligned_cols=177 Identities=27% Similarity=0.379 Sum_probs=133.7
Q ss_pred HHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCC---C-----HHHH
Q 016804 132 TILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKM---R-----DEQI 203 (382)
Q Consensus 132 TLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~---~-----~~~~ 203 (382)
|...|..+.+.|.+|+|+|+|+++.. |..+++.+++.|........ . .++.
T Consensus 383 ~C~~C~g~rl~~~~~~V~i~G~~i~~---------------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~ 441 (916)
T 3pih_A 383 TCSVCGGRRLNREALSVKINGLNIHE---------------------FTELSISEELEFLKNLNLTEREREIVGELLKEI 441 (916)
T ss_dssp ECTTTCSCCBCTTGGGEEETTEEHHH---------------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHH
T ss_pred cchhcccccCChHhcCcEECCccHHH---------------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHH
Confidence 34466677889999999999987521 22356666666532110000 0 1122
Q ss_pred HHHHHHHHHHcCCccc-ccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 016804 204 SELVKENLAAVGLKGV-EDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK 282 (382)
Q Consensus 204 ~~~v~~~L~~~gL~~~-~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~ 282 (382)
. ...+.|..+||... .++++.+|||||||||+|||||+.+ .+|.+|||||||+|||+.....++++|++|+++
T Consensus 442 ~-~~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~-----p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~ 515 (916)
T 3pih_A 442 E-KRLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSG-----LTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDL 515 (916)
T ss_dssp H-HHHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTT-----CCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTT
T ss_pred H-HHHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhC-----CCCcEEEEECCccCCCHHHHHHHHHHHHHHHhc
Confidence 2 33567888999764 6899999999999999999999973 234499999999999999999999999999877
Q ss_pred CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccCCCCcccccccEEEEE------eCCeEEEEec
Q 016804 283 GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFL------YEGKIVWQGM 356 (382)
Q Consensus 283 g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l------~~G~i~~~g~ 356 (382)
| .|||+||||++.+.. |||| ++| ++|+|+++|+
T Consensus 516 G----------~TvivVtHd~~~~~~-aD~i------------------------------i~lgpgag~~~G~iv~~G~ 554 (916)
T 3pih_A 516 G----------NTVIVVEHDEEVIRN-ADHI------------------------------IDIGPGGGTNGGRVVFQGT 554 (916)
T ss_dssp T----------CEEEEECCCHHHHHT-CSEE------------------------------EEEESSSGGGCSEEEEEEC
T ss_pred C----------CEEEEEeCCHHHHHh-CCEE------------------------------EEEcCCcccCCCEEEEeec
Confidence 6 599999999998864 8877 999 8999999999
Q ss_pred ccccccC-CCHHHHHHHcCCC
Q 016804 357 THEFTSS-SNPIVQQFASGSL 376 (382)
Q Consensus 357 ~~~~~~~-~~~~~~~~~~~~~ 376 (382)
++++... ....+..+..+..
T Consensus 555 ~~e~~~~~~~~~~~~~l~~~~ 575 (916)
T 3pih_A 555 VDELLKNPDSSLTGEYLSGKR 575 (916)
T ss_dssp HHHHHHSCTTCHHHHHHHSSS
T ss_pred hhhhhcCchhcchhhhhhccc
Confidence 9997643 3356677776643
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-24 Score=207.86 Aligned_cols=180 Identities=16% Similarity=0.154 Sum_probs=123.1
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc-EEEECCEECCCCCChhhhccceEEEEecCCCCCCCC
Q 016804 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG-EVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSL 182 (382)
Q Consensus 104 ~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG-~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~l 182 (382)
.++|+++++.+++|++++|+||||||||||++.|+|+..|++| .|.+.+.+. ...... .++.+++|+..+
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~----~~~~~~-~r~~~~~~~~~~---- 92 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE----SVEETA-EDLIGLHNRVRL---- 92 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS----CHHHHH-HHHHHHHTTCCG----
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC----CHHHHH-HHHHHHHcCCCh----
Confidence 4579999999999999999999999999999999999999988 776654332 222221 134444444322
Q ss_pred CHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHH-HHHHHHHHHHhcCCCCCCCCCcEEEEeCCC
Q 016804 183 TVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGM-KKRVALARSIIFDNTKESVEPEVLLYDEPT 261 (382)
Q Consensus 183 TV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGq-rQRVaIArAL~~~~~~~a~~P~iLLLDEPt 261 (382)
++.+++..+. .+.++..+.+.++++..++. ....+.++|.+| +||+. |+++.. +|++||+||||
T Consensus 93 ~~~~~l~~~~-----~~~~~~~~~~~~~l~~~~l~--i~~~~~~~~~~~l~~~~~-a~~~~~-------~p~llilDept 157 (296)
T 1cr0_A 93 RQSDSLKREI-----IENGKFDQWFDELFGNDTFH--LYDSFAEAETDRLLAKLA-YMRSGL-------GCDVIILDHIS 157 (296)
T ss_dssp GGCHHHHHHH-----HHHTHHHHHHHHHHSSSCEE--EECCCCSCCHHHHHHHHH-HHHHTT-------CCSEEEEEEEC
T ss_pred hhccccccCC-----CCHHHHHHHHHHHhccCCEE--EECCCCCCCHHHHHHHHH-HHHHhc-------CCCEEEEcCcc
Confidence 2334444321 12233344445554433332 344567899999 67776 888886 69999999999
Q ss_pred C---C---CCH-HHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCH--H--------------------HHHHhhc
Q 016804 262 A---G---LDP-IASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQH--S--------------------TIRRAVD 311 (382)
Q Consensus 262 a---g---LD~-~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl--~--------------------~~~~~aD 311 (382)
+ + +|. ....++.+.|++++++ + +|||++||+. + .+.++||
T Consensus 158 ~~~~~~~~~d~~~~~~~i~~~L~~la~~~~----------~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD 227 (296)
T 1cr0_A 158 IVVSASGESDERKMIDNLMTKLKGFAKSTG----------VVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSD 227 (296)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHC----------CEEEEEEECC-----------------CCC---CHHHHCS
T ss_pred ccCCCCCCCCHHHHHHHHHHHHHHHHHHhC----------CeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCc
Confidence 9 5 565 6678899999999765 5 6999999995 5 6788999
Q ss_pred hhcccc
Q 016804 312 RLCLFQ 317 (382)
Q Consensus 312 rv~~~~ 317 (382)
+|++|.
T Consensus 228 ~vi~L~ 233 (296)
T 1cr0_A 228 TIIALE 233 (296)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 986664
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.89 E-value=6.7e-23 Score=201.48 Aligned_cols=79 Identities=27% Similarity=0.342 Sum_probs=68.0
Q ss_pred cccCCCCCCChHHHH------HHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCC
Q 016804 219 VEDRLPSELSGGMKK------RVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGN 292 (382)
Q Consensus 219 ~~~~~~~~LSGGqrQ------RVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~ 292 (382)
..++++.+||||||| |+++|+||+. +|++|||||||++||+..+..+.+.|+++.+++
T Consensus 241 ~~~~~~~~lS~G~~~~~~la~~l~~a~~l~~-------~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~--------- 304 (339)
T 3qkt_A 241 GKERPLTFLSGGERIALGLAFRLAMSLYLAG-------EISLLILDEPTPYLDEERRRKLITIMERYLKKI--------- 304 (339)
T ss_dssp TEEECGGGSCHHHHHHHHHHHHHHHHHHTTT-------TTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGS---------
T ss_pred cCcCChHHCCHHHHHHHHHHHHHHHHHHhcC-------CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcC---------
Confidence 346788999999999 6677788875 699999999999999999999999999987766
Q ss_pred ceEEEEEccCHHHHHHhhchhcc
Q 016804 293 IASYVVVTHQHSTIRRAVDRLCL 315 (382)
Q Consensus 293 ~~tiIivTHdl~~~~~~aDrv~~ 315 (382)
.|+|+||||.+ +..+||++++
T Consensus 305 -~~vi~~sH~~~-~~~~~d~~~~ 325 (339)
T 3qkt_A 305 -PQVILVSHDEE-LKDAADHVIR 325 (339)
T ss_dssp -SEEEEEESCGG-GGGGCSEEEE
T ss_pred -CEEEEEEChHH-HHHhCCEEEE
Confidence 49999999965 6678998844
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.4e-24 Score=222.33 Aligned_cols=169 Identities=14% Similarity=0.101 Sum_probs=129.8
Q ss_pred eEEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 91 LIDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 91 ~I~~~nvs~~yg~-~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
.+++++++..|++ ..+| +..|++|++++|+||||||||||+++++|+..|+ |+ . .+
T Consensus 257 ~~~~~~l~~g~~~ld~vL---~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~------~-------------vi 313 (525)
T 1tf7_A 257 RSSNVRVSSGVVRLDEMC---GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE------R-------------AI 313 (525)
T ss_dssp CCCCCEECCSCHHHHHHT---TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC------C-------------EE
T ss_pred ccccceeecChHHHHHHh---CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC------C-------------EE
Confidence 4566777665533 1233 4489999999999999999999999999998874 43 0 14
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
.|++|++. .++.++... .+.+. .+ +...|+..+.+++|.+|||||+||+++|+++..
T Consensus 314 ~~~~ee~~----~~l~~~~~~-----~g~~~-------~~-~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~------ 370 (525)
T 1tf7_A 314 LFAYEESR----AQLLRNAYS-----WGMDF-------EE-MERQNLLKIVCAYPESAGLEDHLQIIKSEINDF------ 370 (525)
T ss_dssp EEESSSCH----HHHHHHHHT-----TSCCH-------HH-HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTT------
T ss_pred EEEEeCCH----HHHHHHHHH-----cCCCH-------HH-HHhCCCEEEEEeccccCCHHHHHHHHHHHHHhh------
Confidence 56677642 133333311 12221 11 335677778889999999999999999999986
Q ss_pred CCCcEEEEeCCCCCCCHH-----HHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCH----------HHHHHhhchhc
Q 016804 250 VEPEVLLYDEPTAGLDPI-----ASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQH----------STIRRAVDRLC 314 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~-----~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl----------~~~~~~aDrv~ 314 (382)
+|++||+| ||++||+. .+..+.++++.+++.| +|+|++||+. ..+..+||+|+
T Consensus 371 -~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g----------~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi 438 (525)
T 1tf7_A 371 -KPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEE----------ITGLFTNTSDQFMGAHSITDSHISTITDTII 438 (525)
T ss_dssp -CCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTT----------CEEEEEEECSSSSCCCSSCSSCCTTTCSEEE
T ss_pred -CCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCC----------CEEEEEECcccccCcccccCcccceeeeEEE
Confidence 69999999 99999999 9999999999998776 5999999999 77888999997
Q ss_pred ccc
Q 016804 315 LFQ 317 (382)
Q Consensus 315 ~~~ 317 (382)
+|+
T Consensus 439 ~L~ 441 (525)
T 1tf7_A 439 LLQ 441 (525)
T ss_dssp EEE
T ss_pred EEE
Confidence 765
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2e-24 Score=202.22 Aligned_cols=164 Identities=16% Similarity=0.202 Sum_probs=105.4
Q ss_pred eCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCC
Q 016804 101 FGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFD 180 (382)
Q Consensus 101 yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~ 180 (382)
-|++++|+|+||++++|+++||+||||||||||+++|+|++ |.+.++ . .+.+++|++|+. +++
T Consensus 9 ~~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~-----------~-~~~~i~~v~~d~-~~~ 71 (245)
T 2jeo_A 9 SGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE-----------Q-RQRKVVILSQDR-FYK 71 (245)
T ss_dssp --------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC-----------G-GGCSEEEEEGGG-GBC
T ss_pred CCCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc-----------c-cCCceEEEeCCc-Ccc
Confidence 45678999999999999999999999999999999999976 555444 0 123699999995 677
Q ss_pred CCCHHHHHHhhHhhcCCCC-HH-HHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEe
Q 016804 181 SLTVRENVGFLLYENSKMR-DE-QISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYD 258 (382)
Q Consensus 181 ~lTV~eni~~~~~~~~~~~-~~-~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLD 258 (382)
.+|+.+|+.+..... ... ++ ...+.+.+.++.+ .+..++++.+||+||+||+++ ++++. +|+++|+|
T Consensus 72 ~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~~l--~~~~~~~~~~ls~g~~~r~~~-~~~~~-------~~~~lilD 140 (245)
T 2jeo_A 72 VLTAEQKAKALKGQY-NFDHPDAFDNDLMHRTLKNI--VEGKTVEVPTYDFVTHSRLPE-TTVVY-------PADVVLFE 140 (245)
T ss_dssp CCCHHHHHHHHTTCC-CTTSGGGBCHHHHHHHHHHH--HTTCCEEECCEETTTTEECSS-CEEEC-------CCSEEEEE
T ss_pred ccCHhHhhhhhccCC-CCCCcccccHHHHHHHHHHH--HCCCCeecccccccccCccCc-eEEec-------CCCEEEEe
Confidence 789999987754211 111 11 1122344455543 345567789999999999988 56664 69999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCH-HHHHHhhch
Q 016804 259 EPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQH-STIRRAVDR 312 (382)
Q Consensus 259 EPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl-~~~~~~aDr 312 (382)
||....|.. +.++ .+ .+|+++||+. .....++++
T Consensus 141 g~~~~~~~~--------l~~~--~~----------~~i~v~th~~~~~~r~~~r~ 175 (245)
T 2jeo_A 141 GILVFYSQE--------IRDM--FH----------LRLFVDTDSDVRLSRRVLRD 175 (245)
T ss_dssp CTTTTTSHH--------HHTT--CS----------EEEEEECCHHHHHHHHHHHH
T ss_pred CccccccHH--------HHHh--cC----------eEEEEECCHHHHHHHHHHHH
Confidence 999888764 1222 13 5999999974 443445443
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.2e-22 Score=208.36 Aligned_cols=72 Identities=26% Similarity=0.349 Sum_probs=65.4
Q ss_pred CCCCC-ChHHHHHHHHHHHHhcCCCCCCCCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEE
Q 016804 223 LPSEL-SGGMKKRVALARSIIFDNTKESVEP--EVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVV 299 (382)
Q Consensus 223 ~~~~L-SGGqrQRVaIArAL~~~~~~~a~~P--~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIiv 299 (382)
++.+| ||||||||+|||||+. +| ++|||||||+|||+.++..+.++|+++++ + .|||+|
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~-------~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~----------~~vi~i 454 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVL-------GADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-T----------RQVLVV 454 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHH-------CCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-H----------SEEEEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHh-------CCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-C----------CEEEEE
Confidence 45677 9999999999999997 58 99999999999999999999999999987 4 499999
Q ss_pred ccCHHHHHHhhchh
Q 016804 300 THQHSTIRRAVDRL 313 (382)
Q Consensus 300 THdl~~~~~~aDrv 313 (382)
||+++.+. .|||+
T Consensus 455 tH~~~~~~-~~d~~ 467 (517)
T 4ad8_A 455 THLAQIAA-RAHHH 467 (517)
T ss_dssp CCCHHHHH-HSSEE
T ss_pred ecCHHHHH-hCCEE
Confidence 99999776 58877
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-21 Score=214.61 Aligned_cols=145 Identities=28% Similarity=0.426 Sum_probs=116.5
Q ss_pred CCCHHHHHHhhHhhcCCCCH----------HHHHHHHHHHHHHcCCccc-ccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 181 SLTVRENVGFLLYENSKMRD----------EQISELVKENLAAVGLKGV-EDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 181 ~lTV~eni~~~~~~~~~~~~----------~~~~~~v~~~L~~~gL~~~-~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
.+||.|++.|.- .-..+. +++.+++ +.|+.+||..+ +++.+.+|||||||||+||++|..+
T Consensus 451 ~ltV~e~~~f~e--~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~----- 522 (972)
T 2r6f_A 451 AMSVTEALAFFD--GLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSR----- 522 (972)
T ss_dssp TSBHHHHHHHHH--HCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTC-----
T ss_pred hCCHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhC-----
Confidence 589999999943 222333 3455565 46899999864 7999999999999999999999863
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
..|++|||||||++||+...+.+.++|++|++.| .|||+|+||++++. .||||
T Consensus 523 ~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G----------~TVIvVeHdl~~i~-~ADrI---------------- 575 (972)
T 2r6f_A 523 LTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLG----------NTLIVVEHDEDTML-AADYL---------------- 575 (972)
T ss_dssp CCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTT----------CEEEEECCCHHHHH-SCSEE----------------
T ss_pred CCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCC----------CEEEEEecCHHHHH-hCCEE----------------
Confidence 1259999999999999999999999999998776 49999999999875 68877
Q ss_pred cCCCCcccccccEEEEE------eCCeEEEEecccccccCCCHHHHHHHcC
Q 016804 330 AVAPDKEVFFIYRLIFL------YEGKIVWQGMTHEFTSSSNPIVQQFASG 374 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l------~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 374 (382)
++| ++|+++++|+++++.......+.+++.|
T Consensus 576 --------------i~LgpgaG~~gG~iv~~G~~~e~~~~~~slt~~~l~g 612 (972)
T 2r6f_A 576 --------------IDIGPGAGIHGGEVVAAGTPEEVMNDPNSLTGQYLSG 612 (972)
T ss_dssp --------------EEECSSSGGGCCSEEEEECTTTTTTCTTCTTHHHHHT
T ss_pred --------------EEeCCCccCCCCEEEEecCHHHHHhhhHHHHHHHhcC
Confidence 899 7999999999999875333334444444
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=4.8e-22 Score=216.58 Aligned_cols=192 Identities=20% Similarity=0.234 Sum_probs=136.7
Q ss_pred CCCccHHHHHHHHHcC---------CCCCccEEEECCEECCCCCChhhhccceEEEEe---cCCCCCC----CCC-HHHH
Q 016804 125 PSGTGKSTILKIIAGL---------LAPDKGEVYIRGRKRAGLISDEEISGLRIGLVF---QSAALFD----SLT-VREN 187 (382)
Q Consensus 125 pNGaGKSTLLklI~Gl---------~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~---Q~~~l~~----~lT-V~en 187 (382)
.+..||+||.+.+... +.|.+|+|.++|+++.... ...... .++++. |++.... .++ -...
T Consensus 270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~~-~~~v~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (842)
T 2vf7_A 270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELS-RLPLAR-VSELLRPYAEEREPGHAERVKNRPEQAI 347 (842)
T ss_dssp CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHHH-HSBHHH-HHHHHHHHHTTCSSCSTTSSSSCSSHHH
T ss_pred cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHHh-hcCHHH-HHHHHHhhhhhhhhcccchhhcchhhHH
Confidence 4667999999988773 4567899999998764310 000000 123333 3221100 000 1112
Q ss_pred HHhhHhhcCCCCHHHHHHHHHHHHHHcCCccc-ccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCC--cEEEEeCCCCCC
Q 016804 188 VGFLLYENSKMRDEQISELVKENLAAVGLKGV-EDRLPSELSGGMKKRVALARSIIFDNTKESVEP--EVLLYDEPTAGL 264 (382)
Q Consensus 188 i~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~-~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P--~iLLLDEPtagL 264 (382)
+.+.+ .+++.++++ .|+.+||... +++.+.+|||||||||+||++|+. +| .+|||||||++|
T Consensus 348 i~~~i-------~~ei~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~-------~p~~~llILDEPT~~L 412 (842)
T 2vf7_A 348 ALQRM-------AADLVKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYS-------NLFGVVYVLDEPSAGL 412 (842)
T ss_dssp HHHHH-------HHHHHHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTT-------CCCSCEEEEECTTTTC
T ss_pred HHHHH-------HHHHHHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhh-------CCCCeEEEeeCccccC
Confidence 22211 245566666 6889999865 799999999999999999999986 46 599999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccCCCCcccccccEEE
Q 016804 265 DPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLI 344 (382)
Q Consensus 265 D~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii 344 (382)
|+...+.+.++|++|++.| .|||+|+||++.+ ..|||| +
T Consensus 413 d~~~~~~L~~~l~~L~~~G----------~TVIvVeHdl~~l-~~aD~i------------------------------i 451 (842)
T 2vf7_A 413 HPADTEALLSALENLKRGG----------NSLFVVEHDLDVI-RRADWL------------------------------V 451 (842)
T ss_dssp CGGGHHHHHHHHHHHHTTT----------CEEEEECCCHHHH-TTCSEE------------------------------E
T ss_pred CHHHHHHHHHHHHHHHHcC----------CEEEEEcCCHHHH-HhCCEE------------------------------E
Confidence 9999999999999998776 4999999999866 468877 9
Q ss_pred EE------eCCeEEEEecccccccCCCHHHHHHHcC
Q 016804 345 FL------YEGKIVWQGMTHEFTSSSNPIVQQFASG 374 (382)
Q Consensus 345 ~l------~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 374 (382)
+| ++|++++.|+++++.......+..++.+
T Consensus 452 ~lgpgaG~~~G~iv~~g~~~~~~~~~~~~~~~~l~~ 487 (842)
T 2vf7_A 452 DVGPEAGEKGGEILYSGPPEGLKHVPESQTGQYLFA 487 (842)
T ss_dssp EECSSSGGGCCSEEEEECGGGGGGCTTCHHHHHHHT
T ss_pred EeCCCcccCCCEEEEecCHHHHHhchHHHHHHHhhh
Confidence 99 7999999999999875433344445444
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-24 Score=210.43 Aligned_cols=165 Identities=18% Similarity=0.226 Sum_probs=88.8
Q ss_pred EeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC-CCCCccEEEECCEECCCCCChhhhccceEEEEe
Q 016804 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL-LAPDKGEVYIRGRKRAGLISDEEISGLRIGLVF 173 (382)
Q Consensus 95 ~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl-~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~ 173 (382)
+||+++|+++.++++++|+| +|+||||||||||+++|+|. ..|++| |.++|.++.. .. ....+++++
T Consensus 2 ~~l~~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~---t~--~~~~~~~~~ 69 (301)
T 2qnr_A 2 SNLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER---TV--QIEASTVEI 69 (301)
T ss_dssp ----------------CEEE------EEEEETTSSHHHHHHHHHC------------------------------CEEEE
T ss_pred CCCcceECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC---cc--eEeeEEEEe
Confidence 58999999999999999998 99999999999999999998 889999 9888876532 11 112489999
Q ss_pred cCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCc
Q 016804 174 QSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPE 253 (382)
Q Consensus 174 Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~ 253 (382)
|...++..+|++|++.++.... ..+.....+.. +.+..++++.++|||||||+.+|||++
T Consensus 70 q~~~~~~~ltv~Dt~g~~~~~~---~~e~~~~l~~~------l~~~~~~~~~~~sgg~rqrv~~ara~~----------- 129 (301)
T 2qnr_A 70 EERGVKLRLTVVDTPGYGDAIN---CRDCFKTIISY------IDEQFERYLHDESGLNRRHIIDNRVHC----------- 129 (301)
T ss_dssp C---CCEEEEEEEEC--------------CTTHHHH------HHHHHHHHHHHHTSSCCTTCCCCCCCE-----------
T ss_pred cCCCcccCcchhhhhhhhhhcC---cHHHHHHHHHH------HHHHHHHHHHHhCHHhhhhhhhhhhhh-----------
Confidence 9988877889999987754211 00111111111 223456788899999999999888873
Q ss_pred EEEEeCCCCC-CCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHH
Q 016804 254 VLLYDEPTAG-LDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS 304 (382)
Q Consensus 254 iLLLDEPtag-LD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~ 304 (382)
++++||||++ ||+... ++++++.++.. .++|+++||+.
T Consensus 130 ll~ldePt~~~Ld~~~~----~~l~~l~~~~~---------iilV~~K~Dl~ 168 (301)
T 2qnr_A 130 CFYFISPFGHGLKPLDV----AFMKAIHNKVN---------IVPVIAKADTL 168 (301)
T ss_dssp EEEEECSSSSSCCHHHH----HHHHHHTTTSC---------EEEEECCGGGS
T ss_pred eeeeecCcccCCCHHHH----HHHHHHHhcCC---------EEEEEEeCCCC
Confidence 8999999985 999873 56666654311 68999999974
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.85 E-value=3.4e-24 Score=226.63 Aligned_cols=171 Identities=18% Similarity=0.186 Sum_probs=104.1
Q ss_pred ceEEEEeEEEEeCC--eeeeEee----------eEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-CccEEEECCEECC
Q 016804 90 VLIDCRNVYKSFGE--KHILRGV----------SFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-DKGEVYIRGRKRA 156 (382)
Q Consensus 90 ~~I~~~nvs~~yg~--~~iL~~v----------sl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p-~sG~I~i~G~~i~ 156 (382)
+.++++||++.|++ +++|+.+ +|+++. +||+|||||||||||++|+|+..| ++|.|+++|.++.
T Consensus 9 ~~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 9 GSVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 35889999999975 3455544 366665 999999999999999999999988 8999999999852
Q ss_pred CCCCh-hhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHH
Q 016804 157 GLISD-EEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRV 235 (382)
Q Consensus 157 ~~~~~-~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRV 235 (382)
..... ....+.+|||+||++.+++.+||.+|+.+......... .++ | ++++
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~--------------~~~-----------s---~~~i 137 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEG--------------MGI-----------S---HELI 137 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSS--------------SCC-----------C---SCCE
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCc--------------ccc-----------c---hHHH
Confidence 11101 11123369999999999999999999987532110000 011 1 1222
Q ss_pred HHHHHHhcCCCCCCCCCcEEEEeCC------CCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHH
Q 016804 236 ALARSIIFDNTKESVEPEVLLYDEP------TAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTI 306 (382)
Q Consensus 236 aIArAL~~~~~~~a~~P~iLLLDEP------tagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~ 306 (382)
.++.+... .|+++|+||| |+|||+..+..+.++++++.++.. ..+++++||+++.+
T Consensus 138 ~l~i~~~~-------~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~--------~iil~vvt~~~d~a 199 (608)
T 3szr_A 138 TLEISSRD-------VPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQE--------TISLVVVPSNVDIA 199 (608)
T ss_dssp EEEEEESS-------SCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSS--------CCEEEEEESSSCTT
T ss_pred HHHhcCCC-------CCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCC--------CCceEEEeccchhc
Confidence 23333332 5999999999 999999999999999999754421 16899999998744
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.2e-23 Score=195.74 Aligned_cols=141 Identities=16% Similarity=0.185 Sum_probs=104.3
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC-ccEEEECCEECCCCCChhhhccceEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD-KGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~-sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
++++++++. ++|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.... +..++
T Consensus 6 ~~l~~l~~~----~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~------~~~~~ 73 (261)
T 2eyu_A 6 PEFKKLGLP----DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF------KHKKS 73 (261)
T ss_dssp CCGGGSSCC----THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC------CCSSS
T ss_pred CChHHCCCH----HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec------CCcce
Confidence 455666542 5899999 8999999999999999999999999999998 999999986542110 00122
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
+++|. .+|++. ..| |++||+||..
T Consensus 74 ~v~q~-------------------------------------~~gl~~------~~l------~~~la~aL~~------- 97 (261)
T 2eyu_A 74 IVNQR-------------------------------------EVGEDT------KSF------ADALRAALRE------- 97 (261)
T ss_dssp EEEEE-------------------------------------EBTTTB------SCH------HHHHHHHHHH-------
T ss_pred eeeHH-------------------------------------HhCCCH------HHH------HHHHHHHHhh-------
Confidence 33321 233321 122 8999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccc
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQI 318 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~ 318 (382)
+|++||+|||| |+.+... +++.. +.| .+++++||+.+ +..+|||+++|.+
T Consensus 98 ~p~illlDEp~---D~~~~~~---~l~~~-~~g----------~~vl~t~H~~~-~~~~~dri~~l~~ 147 (261)
T 2eyu_A 98 DPDVIFVGEMR---DLETVET---ALRAA-ETG----------HLVFGTLHTNT-AIDTIHRIVDIFP 147 (261)
T ss_dssp CCSEEEESCCC---SHHHHHH---HHHHH-HTT----------CEEEEEECCSS-HHHHHHHHHHTSC
T ss_pred CCCEEEeCCCC---CHHHHHH---HHHHH-ccC----------CEEEEEeCcch-HHHHHHHHhhhcC
Confidence 59999999999 9887654 34433 445 49999999988 6788999977764
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.84 E-value=4.1e-23 Score=201.31 Aligned_cols=154 Identities=18% Similarity=0.153 Sum_probs=110.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChh----hhccceEEEEecCCCCCCCCCHHHHHHhh
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE----EISGLRIGLVFQSAALFDSLTVRENVGFL 191 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~----~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~ 191 (382)
+|++++|+||||||||||+++|+|+++|++|+|.+.|.++....... +..+.+|+|++|++.++|..++++|+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999875432111 11123599999999999989999999875
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHH
Q 016804 192 LYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTV 271 (382)
Q Consensus 192 ~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~ 271 (382)
.... .. ..+++..|+.+...+++.+| ++||++|||||+. +|+.++| .||+.+...
T Consensus 181 ~~~~--~d--------~~llDt~G~~~~~~~~~~eL---s~~r~~iaRal~~-------~P~~~lL-----vLDa~t~~~ 235 (304)
T 1rj9_A 181 KARG--YD--------LLFVDTAGRLHTKHNLMEEL---KKVKRAIAKADPE-------EPKEVWL-----VLDAVTGQN 235 (304)
T ss_dssp HHHT--CS--------EEEECCCCCCTTCHHHHHHH---HHHHHHHHHHCTT-------CCSEEEE-----EEETTBCTH
T ss_pred HhCC--CC--------EEEecCCCCCCchHHHHHHH---HHHHHHHHHhhcC-------CCCeEEE-----EEcHHHHHH
Confidence 4211 10 01234455544333444444 4899999999986 6994443 444444455
Q ss_pred HHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHH
Q 016804 272 VEDLIRSVHKK-GENGLANPGNIASYVVVTHQHS 304 (382)
Q Consensus 272 l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~ 304 (382)
+.+.++++.+. + .|+|++||+..
T Consensus 236 ~~~~~~~~~~~~~----------~t~iivTh~d~ 259 (304)
T 1rj9_A 236 GLEQAKKFHEAVG----------LTGVIVTKLDG 259 (304)
T ss_dssp HHHHHHHHHHHHC----------CSEEEEECTTS
T ss_pred HHHHHHHHHHHcC----------CcEEEEECCcc
Confidence 66677777655 5 59999999854
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=6e-21 Score=210.12 Aligned_cols=150 Identities=20% Similarity=0.167 Sum_probs=103.5
Q ss_pred ceEEEEeEEEEe-----CCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHH--------HcCCCCCccEEEECCEECC
Q 016804 90 VLIDCRNVYKSF-----GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKII--------AGLLAPDKGEVYIRGRKRA 156 (382)
Q Consensus 90 ~~I~~~nvs~~y-----g~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI--------~Gl~~p~sG~I~i~G~~i~ 156 (382)
..|++++...-+ +++.+++|++|++++|++++|+||||||||||||+| .|..-|.++..
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------- 701 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------- 701 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------
Confidence 346777765444 235799999999999999999999999999999999 55444432211
Q ss_pred CCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHH
Q 016804 157 GLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVA 236 (382)
Q Consensus 157 ~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVa 236 (382)
++.+. +++.++|+.+ .....+|+|+++++.
T Consensus 702 ------------~~~~d-----------------------------------~i~~~ig~~d---~l~~~lStf~~e~~~ 731 (934)
T 3thx_A 702 ------------VSIVD-----------------------------------CILARVGAGD---SQLKGVSTFMAEMLE 731 (934)
T ss_dssp ------------EECCS-----------------------------------EEEEECC------------CHHHHHHHH
T ss_pred ------------chHHH-----------------------------------HHHHhcCchh---hHHHhHhhhHHHHHH
Confidence 11100 0111122221 223457888888888
Q ss_pred HHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHH-HHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVV-EDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 237 IArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l-~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|++|.. +.+|+++||||||+|+|+.....+ ..+++.+.++ | .++|++||+++.+ .+||++
T Consensus 732 ~a~il~~-----a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g----------~~vl~aTH~~el~-~lad~~ 794 (934)
T 3thx_A 732 TASILRS-----ATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIG----------AFCMFATHFHELT-ALANQI 794 (934)
T ss_dssp HHHHHHH-----CCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTC----------CEEEEEESCGGGG-GGGGTC
T ss_pred HHHHHHh-----ccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCC----------CEEEEEcCcHHHH-HHhccc
Confidence 8888821 137999999999999999988888 7778888764 4 5999999997655 689988
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-21 Score=211.82 Aligned_cols=145 Identities=21% Similarity=0.208 Sum_probs=110.3
Q ss_pred eEEEEeEEEEe---CCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-CCccEEEECCEECCCCCChhhhcc
Q 016804 91 LIDCRNVYKSF---GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-PDKGEVYIRGRKRAGLISDEEISG 166 (382)
Q Consensus 91 ~I~~~nvs~~y---g~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~-p~sG~I~i~G~~i~~~~~~~~~~~ 166 (382)
.|++++...-. +++.+++|+||+ |++++|+||||||||||||+|+|+.. ++.|.+.- . .+
T Consensus 550 ~i~i~~~rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vp----------a---~~ 613 (765)
T 1ewq_A 550 RLQIRAGRHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVP----------A---EE 613 (765)
T ss_dssp SEEEEEECCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBS----------S---SE
T ss_pred cEEEEEeECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceee----------h---hc
Confidence 47788775444 456799999999 99999999999999999999999974 67776420 0 12
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHH--hcC
Q 016804 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSI--IFD 244 (382)
Q Consensus 167 ~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL--~~~ 244 (382)
.++++++| +|+.+++.||+.. .+|+||+|++.+|+++ +.
T Consensus 614 ~~i~~v~~---i~~~~~~~d~l~~-----------------------------------g~S~~~~e~~~la~il~~a~- 654 (765)
T 1ewq_A 614 AHLPLFDG---IYTRIGASDDLAG-----------------------------------GKSTFMVEMEEVALILKEAT- 654 (765)
T ss_dssp EEECCCSE---EEEECCC-----------------------------------------CCSHHHHHHHHHHHHHHHCC-
T ss_pred cceeeHHH---hhccCCHHHHHHh-----------------------------------cccHHHHHHHHHHHHHHhcc-
Confidence 25888887 5666777777643 2588999999999999 64
Q ss_pred CCCCCCCCcEEEEeCC---CCCCCHHHH-HHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhh
Q 016804 245 NTKESVEPEVLLYDEP---TAGLDPIAS-TVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAV 310 (382)
Q Consensus 245 ~~~~a~~P~iLLLDEP---tagLD~~~~-~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~a 310 (382)
+|+++||||| |++||+.+. ..+.+.|.+ .| .|+|++||+++.+. ++
T Consensus 655 ------~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~---~g----------~~vl~~TH~~~l~~-~~ 704 (765)
T 1ewq_A 655 ------ENSLVLLDEVGRGTSSLDGVAIATAVAEALHE---RR----------AYTLFATHYFELTA-LG 704 (765)
T ss_dssp ------TTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH---HT----------CEEEEECCCHHHHT-CC
T ss_pred ------CCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh---CC----------CEEEEEeCCHHHHH-hh
Confidence 6999999999 999999876 467777765 44 59999999987754 44
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.7e-22 Score=181.82 Aligned_cols=151 Identities=13% Similarity=0.108 Sum_probs=95.1
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-------CccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHH
Q 016804 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-------DKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVR 185 (382)
Q Consensus 113 ~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p-------~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~ 185 (382)
-|++|++++|+||||||||||+++|+|+..+ ..|.+++++.+.. . ..++++++|+..+++. |+.
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~---~-----~~~i~~~~~~~~~~~~-~~~ 91 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---R-----PERIREIAQNRGLDPD-EVL 91 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC---C-----HHHHHHHHHHTTSCHH-HHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC---C-----HHHHHHHHHHcCCCHH-HHh
Confidence 6999999999999999999999999996555 3447777775311 1 1136677887776664 777
Q ss_pred HHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCC
Q 016804 186 ENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265 (382)
Q Consensus 186 eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD 265 (382)
+|+.+.. ..... .+++.+..+++++........+|+++++||||+++|
T Consensus 92 ~~~~~~~----~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~ 139 (231)
T 4a74_A 92 KHIYVAR----AFNSN----------------------------HQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFR 139 (231)
T ss_dssp HTEEEEE----CCSHH----------------------------HHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHH
T ss_pred hcEEEEe----cCChH----------------------------HHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhc
Confidence 7765421 11111 112223333333320000013699999999999999
Q ss_pred HH-------H-----HHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHH----HHHHhhchhc
Q 016804 266 PI-------A-----STVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHS----TIRRAVDRLC 314 (382)
Q Consensus 266 ~~-------~-----~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~----~~~~~aDrv~ 314 (382)
+. . ..++.+.|.++.++ | +|||++||.+. .+..+||+++
T Consensus 140 ~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g----------~tvi~vtH~~~~~g~~~~~~~d~~l 195 (231)
T 4a74_A 140 SEYIGRGALAERQQKLAKHLADLHRLANLYD----------IAVFVTNQVQANGGHILAHSATLRV 195 (231)
T ss_dssp HHSCSTTHHHHHHHHHHHHHHHHHHHHHHHT----------CEEEEEEECC---------CCSEEE
T ss_pred cccCCCcchhHHHHHHHHHHHHHHHHHHHCC----------CeEEEEeecccCcchhhHhhceEEE
Confidence 84 2 23677777777654 5 69999999554 4888888773
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.2e-20 Score=188.74 Aligned_cols=76 Identities=24% Similarity=0.284 Sum_probs=63.4
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCH
Q 016804 224 PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQH 303 (382)
Q Consensus 224 ~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl 303 (382)
+..||||||||++||++|+.. +..+|+++||||||++||+..+..+.+.|+++.+++ .++|++||+.
T Consensus 331 ~~~lS~Gq~~~~~la~~la~~---~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~----------~~~ii~th~~ 397 (430)
T 1w1w_A 331 MEYLSGGEKTVAALALLFAIN---SYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPD----------LQFIVISLKN 397 (430)
T ss_dssp GGGSCHHHHHHHHHHHHHHHH---TSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTT----------BEEEEECSCH
T ss_pred cccCCcchHHHHHHHHHHHHh---cCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCC----------CEEEEEECCH
Confidence 446999999999999999830 001599999999999999999999999999986544 5899999996
Q ss_pred HHHHHhhchh
Q 016804 304 STIRRAVDRL 313 (382)
Q Consensus 304 ~~~~~~aDrv 313 (382)
.. ...||++
T Consensus 398 ~~-~~~~d~~ 406 (430)
T 1w1w_A 398 TM-FEKSDAL 406 (430)
T ss_dssp HH-HTTCSEE
T ss_pred HH-HHhCCEE
Confidence 55 5678888
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=8e-24 Score=192.13 Aligned_cols=146 Identities=19% Similarity=0.140 Sum_probs=117.1
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCC--CCCCHHHHHHhh
Q 016804 114 IRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALF--DSLTVRENVGFL 191 (382)
Q Consensus 114 i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~--~~lTV~eni~~~ 191 (382)
.++|+++||+||||||||||+++|+|++.| +++|++|++.++ ..+|+.+++.+.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~------------------------~i~~v~~d~~~~~~~~~~~~~~~~~~ 58 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE------------------------RVALLPMDHYYKDLGHLPLEERLRVN 58 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG------------------------GEEEEEGGGCBCCCTTSCHHHHHHSC
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC------------------------CeEEEecCccccCcccccHHHhcCCC
Confidence 578999999999999999999999999864 389999998876 567999987664
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHH----HHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCC----
Q 016804 192 LYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGM----KKRVALARSIIFDNTKESVEPEVLLYDEPTAG---- 263 (382)
Q Consensus 192 ~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGq----rQRVaIArAL~~~~~~~a~~P~iLLLDEPtag---- 263 (382)
+. .......+.+.++++.+++.+..++++.++|+|| +||+++|++++. +|+++++||||++
T Consensus 59 ~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~-------~~~ll~~de~~~~~~d~ 127 (211)
T 3asz_A 59 YD----HPDAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVIL-------EGILVLYPKELRDLMDL 127 (211)
T ss_dssp TT----SGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEE-------ESTTTTSSHHHHTTCSE
T ss_pred CC----ChhhhhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEE-------eehhhccCHHHHHhcCE
Confidence 31 1111113446677888888888888899999997 478999999997 5999999999999
Q ss_pred ---CCHHHHHHHHHHHHHHH-HcCCCCCCCCCCceEEEEEccCHH
Q 016804 264 ---LDPIASTVVEDLIRSVH-KKGENGLANPGNIASYVVVTHQHS 304 (382)
Q Consensus 264 ---LD~~~~~~l~~lL~~l~-~~g~~~~~~~~~~~tiIivTHdl~ 304 (382)
||+.....+.+.+.+.. +.| .|+++++|++.
T Consensus 128 ~i~ld~~~~~~~~r~l~r~~~~~g----------~t~~~~~~~~~ 162 (211)
T 3asz_A 128 KVFVDADADERFIRRLKRDVLERG----------RSLEGVVAQYL 162 (211)
T ss_dssp EEEEECCHHHHHHHHHHHHHHHSC----------CCHHHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhC----------CCHHHHHHHHH
Confidence 99999999999998864 445 48899999853
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.82 E-value=6.5e-21 Score=209.44 Aligned_cols=156 Identities=15% Similarity=0.157 Sum_probs=107.0
Q ss_pred eEEEEeEEEEe-------CCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC-ccEEEECCEECCCCCChh
Q 016804 91 LIDCRNVYKSF-------GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD-KGEVYIRGRKRAGLISDE 162 (382)
Q Consensus 91 ~I~~~nvs~~y-------g~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~-sG~I~i~G~~i~~~~~~~ 162 (382)
.|.+++...-. +++.+++|+||++++|++++|+||||||||||||+|+++.... .|. -+ ..
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~------~v----pa- 708 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGS------YV----PA- 708 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTC------CB----SS-
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCc------cc----cc-
Confidence 47777765543 3467999999999999999999999999999999998653211 110 00 00
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHh
Q 016804 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSII 242 (382)
Q Consensus 163 ~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~ 242 (382)
....++++. .+ +..+|+.+...+..+++|+||+|++.|+++ +
T Consensus 709 --~~~~i~~~d---~i--------------------------------~~~ig~~d~l~~~~stfs~em~~~~~il~~-a 750 (918)
T 3thx_B 709 --EEATIGIVD---GI--------------------------------FTRMGAADNIYKGRSTFMEELTDTAEIIRK-A 750 (918)
T ss_dssp --SEEEEECCS---EE--------------------------------EEEC----------CCHHHHHHHHHHHHHH-C
T ss_pred --hhhhhhHHH---HH--------------------------------HHhCChHHHHHHhHHHhhHHHHHHHHHHHh-c
Confidence 000122110 01 122333344455567899999999999999 4
Q ss_pred cCCCCCCCCCcEEEEeCCCCCCCHHHHHHHH-HHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVE-DLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 243 ~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~-~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
. +|+++||||||+|||+.....+. .+++.+.++ | .|+|++||+++.+ .+||+.
T Consensus 751 ~-------~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g----------~tvl~vTH~~el~-~l~~~~ 805 (918)
T 3thx_B 751 T-------SQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVK----------SLTLFVTHYPPVC-ELEKNY 805 (918)
T ss_dssp C-------TTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTC----------CEEEEECSCGGGG-GHHHHT
T ss_pred c-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcC----------CeEEEEeCcHHHH-HHHhhc
Confidence 3 69999999999999999998887 778888664 4 5999999998766 578876
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.81 E-value=9.1e-23 Score=183.56 Aligned_cols=173 Identities=11% Similarity=0.086 Sum_probs=102.8
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC-----CCCccEEEECCEECCCCCChhhhc
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL-----APDKGEVYIRGRKRAGLISDEEIS 165 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~-----~p~sG~I~i~G~~i~~~~~~~~~~ 165 (382)
+|+++|++|+|+ ..++++ |.+.+|+.++|+|+||||||||++.|+|.. .|+.|++.+.+.-.. .
T Consensus 3 ~l~~~~~~~~~~-~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~--------~ 71 (210)
T 1pui_A 3 NLNYQQTHFVMS-APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEV--------A 71 (210)
T ss_dssp --------CEEE-ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEE--------E
T ss_pred chhhhhhhheee-cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEe--------c
Confidence 589999999997 578888 899999999999999999999999999998 788888765332100 0
Q ss_pred cceEEEEecCCCCC----CCCC---HHHHHHhhHhhc----------C-CCCHHHHHHHHHHHHHHcCCccc-ccCCCCC
Q 016804 166 GLRIGLVFQSAALF----DSLT---VRENVGFLLYEN----------S-KMRDEQISELVKENLAAVGLKGV-EDRLPSE 226 (382)
Q Consensus 166 ~~~Ig~V~Q~~~l~----~~lT---V~eni~~~~~~~----------~-~~~~~~~~~~v~~~L~~~gL~~~-~~~~~~~ 226 (382)
. .+- +.+.+... +... ....+...+... . ........+.+.++++..++... ...++..
T Consensus 72 ~-~~~-l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~ 149 (210)
T 1pui_A 72 D-GKR-LVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADK 149 (210)
T ss_dssp T-TEE-EEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred C-CEE-EEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccC
Confidence 0 011 11112111 0000 111111111000 0 00011223345566777787653 3566788
Q ss_pred CChHHHHH-HHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcC
Q 016804 227 LSGGMKKR-VALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKG 283 (382)
Q Consensus 227 LSGGqrQR-VaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g 283 (382)
+|+||+|| +..+++++. +|+++++|||||++|+....++++.|.++..++
T Consensus 150 ~s~~~~~~~~~~~~~~~~-------~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~ 200 (210)
T 1pui_A 150 LASGARKAQLNMVREAVL-------AFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEM 200 (210)
T ss_dssp SCHHHHHHHHHHHHHHHG-------GGCSCEEEEECBTTTTBSHHHHHHHHHHHHC--
T ss_pred CCchhHHHHHHHHHHHHH-------hcCCCCceEEEeecCCCCHHHHHHHHHHHHhhc
Confidence 99999999 899999997 488889999999999999999999999987654
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.80 E-value=8.3e-20 Score=160.53 Aligned_cols=76 Identities=28% Similarity=0.363 Sum_probs=68.1
Q ss_pred ccCCCCCCChHHHHHHHHH------HHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCc
Q 016804 220 EDRLPSELSGGMKKRVALA------RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNI 293 (382)
Q Consensus 220 ~~~~~~~LSGGqrQRVaIA------rAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~ 293 (382)
.++++.+||||||||++|| |||+. +|++|||||||+|||+.++..+.+.|+++.++|
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~---------- 113 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAG-------EISLLILDEPTPYLDEERRRKLITIMERYLKKI---------- 113 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHS-------SCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGS----------
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcC-------CCCEEEEECCCccCCHHHHHHHHHHHHHHHccC----------
Confidence 5678999999999999876 89986 599999999999999999999999999987665
Q ss_pred eEEEEEccCHHHHHHhhchh
Q 016804 294 ASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 294 ~tiIivTHdl~~~~~~aDrv 313 (382)
.|+|++|||+ .+..+||++
T Consensus 114 ~tiiivsH~~-~~~~~~d~i 132 (148)
T 1f2t_B 114 PQVILVSHDE-ELKDAADHV 132 (148)
T ss_dssp SEEEEEESCG-GGGGGCSEE
T ss_pred CEEEEEEChH-HHHHhCCEE
Confidence 4999999998 566788877
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.8e-20 Score=203.73 Aligned_cols=155 Identities=17% Similarity=0.153 Sum_probs=105.4
Q ss_pred eEEEEeEEEEe-----CCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-CccEEEECCEECCCCCChhhh
Q 016804 91 LIDCRNVYKSF-----GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-DKGEVYIRGRKRAGLISDEEI 164 (382)
Q Consensus 91 ~I~~~nvs~~y-----g~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p-~sG~I~i~G~~i~~~~~~~~~ 164 (382)
.|.+++...-. +++.+++|+||+ ++|++++|+||||||||||||+|+|+..+ ..| ..+ ..
T Consensus 577 ~i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G------~~v----pa--- 642 (800)
T 1wb9_A 577 GIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIG------SYV----PA--- 642 (800)
T ss_dssp CEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTT------CCB----SS---
T ss_pred CEEEEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcC------ccc----ch---
Confidence 46666653222 456799999999 99999999999999999999999997532 222 111 11
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcC
Q 016804 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFD 244 (382)
Q Consensus 165 ~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~ 244 (382)
...++++++| +|+.+++.+|+..+ .+++|++|++...++ .++.
T Consensus 643 ~~~~i~~~~~---i~~~~~~~d~l~~~--------------------------------~stf~~e~~~~~~il-~~a~- 685 (800)
T 1wb9_A 643 QKVEIGPIDR---IFTRVGAADDLASG--------------------------------RSTFMVEMTETANIL-HNAT- 685 (800)
T ss_dssp SEEEECCCCE---EEEEEC-------------------------------------------CHHHHHHHHHHH-HHCC-
T ss_pred hcccceeHHH---HHhhCCHHHHHHhh--------------------------------hhhhhHHHHHHHHHH-Hhcc-
Confidence 1124777766 56666777766431 123567776544443 3443
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHH-HHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 245 NTKESVEPEVLLYDEPTAGLDPIASTVV-EDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 245 ~~~~a~~P~iLLLDEPtagLD~~~~~~l-~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|+++|||||++|+|+.....+ ..+++.+.++ | .++|++||+++.+ .+||++
T Consensus 686 ------~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g----------~~vl~~TH~~el~-~l~d~~ 739 (800)
T 1wb9_A 686 ------EYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIK----------ALTLFATHYFELT-QLPEKM 739 (800)
T ss_dssp ------TTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTC----------CEEEEECSCGGGG-GHHHHS
T ss_pred ------CCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccC----------CeEEEEeCCHHHH-HHhhhh
Confidence 6999999999999999877775 7888888874 5 5999999999775 589987
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.78 E-value=3.4e-22 Score=182.11 Aligned_cols=127 Identities=18% Similarity=0.198 Sum_probs=87.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcC
Q 016804 117 GEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENS 196 (382)
Q Consensus 117 Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~ 196 (382)
|++++|+||||||||||+++|+|+++ ++| |.++|.+.... ...+.++||++|+.. .. .+++.. .
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~----~~~~~~ig~~~~~~~--g~---~~~l~~----~- 64 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEV----RQGGRRIGFDVVTLS--GT---RGPLSR----V- 64 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEE----ETTSSEEEEEEEETT--SC---EEEEEE----C-
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchh----HhhhceEEEEEEecc--cc---eehhhc----c-
Confidence 78999999999999999999999999 999 99999876322 112347999999862 11 112110 0
Q ss_pred CCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHH-HHHH---HHhcCCCCCCCCCcEEEEeC--CCCCCCHHHHH
Q 016804 197 KMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRV-ALAR---SIIFDNTKESVEPEVLLYDE--PTAGLDPIAST 270 (382)
Q Consensus 197 ~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRV-aIAr---AL~~~~~~~a~~P~iLLLDE--PtagLD~~~~~ 270 (382)
..... .........++...+|+|||+++ ++++ |++. +|++||+|| |+..+|+...+
T Consensus 65 ~~~~~-----------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~-------~~dvlilDE~g~~~~~~~~~~~ 126 (189)
T 2i3b_A 65 GLEPP-----------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGP-------GQRVCVIDEIGKMELFSQLFIQ 126 (189)
T ss_dssp CCCCC-----------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSS-------CCCCEEECCCSTTTTTCSHHHH
T ss_pred cccCC-----------ccccccccceEEEcchHHHHHHHHHHhhhhHhhcc-------CCCEEEEeCCCccccccHHHHH
Confidence 00000 00012244556678999999988 4454 5664 699999999 89999997655
Q ss_pred HHHHHHH
Q 016804 271 VVEDLIR 277 (382)
Q Consensus 271 ~l~~lL~ 277 (382)
.+.++++
T Consensus 127 ~l~~~l~ 133 (189)
T 2i3b_A 127 AVRQTLS 133 (189)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555543
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.1e-21 Score=194.91 Aligned_cols=165 Identities=16% Similarity=0.245 Sum_probs=99.1
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
.+|+++||+++|+++.+++++||+| +|+||||||||||+++|+|+..|+.| .+|..+.. ........+
T Consensus 10 ~~l~~~~l~~~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~---~~t~~~~~i 77 (418)
T 2qag_C 10 GYVGFANLPNQVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRI---KKTVQVEQS 77 (418)
T ss_dssp -----CCCCCCTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC--------CCEEEEE
T ss_pred CcEEEEecceeECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCC---ccceeeeeE
Confidence 4699999999999999999999998 99999999999999999999986655 23322111 001112258
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
++++|+..+++.+||.||+.++.... .....+.+.+.++ ..++.+++||++||||++.
T Consensus 78 ~~v~q~~~~~~~Ltv~Dt~g~~~~~~----~~~~~~~i~~~i~------------~~~~~~l~qr~~IaRal~~------ 135 (418)
T 2qag_C 78 KVLIKEGGVQLLLTIVDTPGFGDAVD----NSNCWQPVIDYID------------SKFEDYLNAESRVNRRQMP------ 135 (418)
T ss_dssp ECC------CEEEEEEECC---------------CHHHHHHHH------------HHHHHHTTTSCC-CCCCCC------
T ss_pred EEEEecCCcccceeeeechhhhhhcc----chhhHHHHHHHHH------------HHHHHHHHHHHHHHHHhcc------
Confidence 99999998888899999998764311 1111111222221 1355677889999999986
Q ss_pred CCCc---EEEEeCCC-CCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHH
Q 016804 250 VEPE---VLLYDEPT-AGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS 304 (382)
Q Consensus 250 ~~P~---iLLLDEPt-agLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~ 304 (382)
+|+ +|++|||| .+||+... +.++++.. + .++|+|.|..+
T Consensus 136 -d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~-~----------v~iIlVinK~D 178 (418)
T 2qag_C 136 -DNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE-K----------VNIIPLIAKAD 178 (418)
T ss_dssp -CC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT-T----------SEEEEEEESTT
T ss_pred -CCCeeEEEEEecCcccCCCHHHH----HHHHHHhc-c----------CcEEEEEEccc
Confidence 599 99999999 69999874 44455543 3 36666666543
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.77 E-value=8.7e-21 Score=187.83 Aligned_cols=154 Identities=15% Similarity=0.133 Sum_probs=106.1
Q ss_pred eeeEee-eEEEeCCcEEEEEcCCCccHHHHHHHHHcCC--CCCc----cE-EEECCEECCCCCChhhhccceEEEEecCC
Q 016804 105 HILRGV-SFKIRHGEAVGIIGPSGTGKSTILKIIAGLL--APDK----GE-VYIRGRKRAGLISDEEISGLRIGLVFQSA 176 (382)
Q Consensus 105 ~iL~~v-sl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~--~p~s----G~-I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~ 176 (382)
+.|+.+ ++.|++|++++|+||||||||||++.|+++. +|++ |+ |+|++++.. .+.++++++|+.
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~--------~~~~i~~i~q~~ 189 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF--------RPERIREIAQNR 189 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC--------CHHHHHHHHHTT
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC--------CHHHHHHHHHHc
Confidence 355555 6899999999999999999999999999998 7777 67 899886521 112578889988
Q ss_pred CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEE
Q 016804 177 ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLL 256 (382)
Q Consensus 177 ~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLL 256 (382)
.+++. ++.+|+.+.. ... |.+|+|++.++++++..-+....+|++||
T Consensus 190 ~~~~~-~v~~ni~~~~----~~~----------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~llI 236 (349)
T 1pzn_A 190 GLDPD-EVLKHIYVAR----AFN----------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLLI 236 (349)
T ss_dssp TCCHH-HHGGGEEEEE----CCS----------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEEE
T ss_pred CCCHH-HHhhCEEEEe----cCC----------------------------hHHHHHHHHHHHHHHHHhccccCCCCEEE
Confidence 77654 7777764421 011 34566777777777631000002699999
Q ss_pred EeCCCCCCCHHH------------HHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHH
Q 016804 257 YDEPTAGLDPIA------------STVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRR 308 (382)
Q Consensus 257 LDEPtagLD~~~------------~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~ 308 (382)
+||||+++|+.. ..++...|+++.++.+ +|+|+++|.......
T Consensus 237 lDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~---------~tvii~~h~~~~~~~ 291 (349)
T 1pzn_A 237 VDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYD---------IAVFVTNQVQARPDA 291 (349)
T ss_dssp EETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTT---------CEEEEEEECC-----
T ss_pred EeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcC---------cEEEEEccccccccc
Confidence 999999999862 3556666677665521 699999998765543
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.1e-19 Score=161.89 Aligned_cols=167 Identities=12% Similarity=0.060 Sum_probs=110.6
Q ss_pred eeeeEeeeE-EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhcc--ceEEEEecCCCCCC
Q 016804 104 KHILRGVSF-KIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG--LRIGLVFQSAALFD 180 (382)
Q Consensus 104 ~~iL~~vsl-~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~--~~Ig~V~Q~~~l~~ 180 (382)
.+.|+++.. .+++|++++|+||||||||||++.|++...+++|.|.+.+.+. ....... ..+++.+|+....
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~- 83 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE----SRDSIIRQAKQFNWDFEEYIEK- 83 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS----CHHHHHHHHHHTTCCCGGGBTT-
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc----CHHHHHHHHHHhcchHHHHhhC-
Confidence 457888887 8999999999999999999999999999888888888766432 1111110 0133333321100
Q ss_pred CCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCc--EEEEe
Q 016804 181 SLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPE--VLLYD 258 (382)
Q Consensus 181 ~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~--iLLLD 258 (382)
++.+ ...... .++ ..+. ....|.++.++...+.+... +|+ +|++|
T Consensus 84 ------~~~~----~~~~~~------------~~~-~~~~---~~~~~~~~~~~~~~~~~~~~-------~~~~~llilD 130 (235)
T 2w0m_A 84 ------KLII----IDALMK------------EKE-DQWS---LVNLTPEELVNKVIEAKQKL-------GYGKARLVID 130 (235)
T ss_dssp ------TEEE----EECCC-----------------CTTB---CSSCCHHHHHHHHHHHHHHH-------CSSCEEEEEE
T ss_pred ------CEEE----Eecccc------------ccC-ceee---ecCCCHHHHHHHHHHHHHhh-------CCCceEEEEE
Confidence 0000 000000 001 1111 12449999988887777654 699 99999
Q ss_pred CCCCCC--CHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCH--------HHHHHhhchhcccc
Q 016804 259 EPTAGL--DPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQH--------STIRRAVDRLCLFQ 317 (382)
Q Consensus 259 EPtagL--D~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl--------~~~~~~aDrv~~~~ 317 (382)
|||+.+ |+.....+.+.|+++.++.+ .|+|++||+. ..+.++||++++|+
T Consensus 131 e~~~~~~~d~~~~~~~~~~l~~~~~~~~---------~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~ 190 (235)
T 2w0m_A 131 SVSALFLDKPAMARKISYYLKRVLNKWN---------FTIYATSQYAITTSQAFGFGVEHVADGIIRFR 190 (235)
T ss_dssp TGGGGSSSCGGGHHHHHHHHHHHHHHTT---------EEEEEEEC-----------CHHHHCSEEEEEE
T ss_pred CchHhhcCCHHHHHHHHHHHHHHHHhCC---------CeEEEEeccCcccccccccchheeeeEEEEEE
Confidence 999888 99999999999999976521 7999999999 45888899885544
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.75 E-value=4.2e-18 Score=161.97 Aligned_cols=154 Identities=14% Similarity=0.139 Sum_probs=106.0
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhH
Q 016804 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLL 192 (382)
Q Consensus 113 ~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~ 192 (382)
.+++|++++|+||||||||||++.+++... .|++. .|.+.. ...++.|+..+... ..+...+.. .
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~--------~~~~v~~~~~e~~~---~~~~~r~~~-~ 90 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGEL--------PTGPVIYLPAEDPP---TAIHHRLHA-L 90 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCC--------CCCCEEEEESSSCH---HHHHHHHHH-H
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccC--------CCccEEEEECCCCH---HHHHHHHHH-H
Confidence 378999999999999999999999998664 57663 454321 11247787654321 012222211 1
Q ss_pred hhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCC--CCCHHHH-
Q 016804 193 YENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA--GLDPIAS- 269 (382)
Q Consensus 193 ~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPta--gLD~~~~- 269 (382)
...... ....++++.+++.+..++.+..||+||+|++ ++++. +|+++|+||||+ ++|+...
T Consensus 91 --g~~~~~----~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~-------~~~livlDe~~~~~~~d~~~~~ 154 (279)
T 1nlf_A 91 --GAHLSA----EERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAE-------GRRLMVLDTLRRFHIEEENASG 154 (279)
T ss_dssp --HTTSCH----HHHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHT-------TCSEEEEECGGGGCCSCTTCHH
T ss_pred --HhhcCh----hhhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcC-------CCCEEEECCHHHhcCCCcCchH
Confidence 111222 2245678888888888889999999998865 67875 599999999999 9998544
Q ss_pred --HHHHHHHHHHHH-cCCCCCCCCCCceEEEEEccCHHHHH
Q 016804 270 --TVVEDLIRSVHK-KGENGLANPGNIASYVVVTHQHSTIR 307 (382)
Q Consensus 270 --~~l~~lL~~l~~-~g~~~~~~~~~~~tiIivTHdl~~~~ 307 (382)
.++++.|+++.+ .| +|||+++|+.....
T Consensus 155 ~~~~~~~~L~~l~~~~g----------~tvi~i~H~~~~~~ 185 (279)
T 1nlf_A 155 PMAQVIGRMEAIAADTG----------CSIVFLHHASKGAA 185 (279)
T ss_dssp HHHHHHHHHHHHHHHHC----------CEEEEEEEC-----
T ss_pred HHHHHHHHHHHHHHHcC----------CEEEEEecCCCccc
Confidence 788888888864 45 69999999987763
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=9.8e-23 Score=201.86 Aligned_cols=164 Identities=13% Similarity=0.153 Sum_probs=111.6
Q ss_pred eeEeeeEEEeC--CcEEEEEcCCCccHHHHHHHHHcCCCCCc----cEEEEC----CEECCCCCChhhhccceEEEEecC
Q 016804 106 ILRGVSFKIRH--GEAVGIIGPSGTGKSTILKIIAGLLAPDK----GEVYIR----GRKRAGLISDEEISGLRIGLVFQS 175 (382)
Q Consensus 106 iL~~vsl~i~~--Ge~vaLiGpNGaGKSTLLklI~Gl~~p~s----G~I~i~----G~~i~~~~~~~~~~~~~Ig~V~Q~ 175 (382)
+.+.|+++|.+ |+.++|+||||||||||+++|+|+++|++ |+|+++ |.++ ... ..+. .+|++++|+
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~-~~~~--~~I~~~~q~ 232 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQ-YSDY--PQMALGHQR 232 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSC-TTTH--HHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCC-hhHH--HHHHHHHHH
Confidence 35679999999 99999999999999999999999999999 888774 3322 111 1111 135666665
Q ss_pred CCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEE
Q 016804 176 AALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVL 255 (382)
Q Consensus 176 ~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iL 255 (382)
+.+|. .|+.+|+.+.. .. ..++.+..+|+|++||..+++++.. .+|+++
T Consensus 233 ~~~~~-~t~~~nl~~~~-----~~-------------------~~~~~~~~~~~~~~~~~~i~~~~~~------~~~~ll 281 (365)
T 1lw7_A 233 YIDYA-VRHSHKIAFID-----TD-------------------FITTQAFCIQYEGKAHPFLDSMIKE------YPFDVT 281 (365)
T ss_dssp HHHHH-HHHCSSEEEES-----SC-------------------HHHHHHHHHHHHSCCCHHHHHHHHH------SCCSEE
T ss_pred HHHHH-HhccCCEEEEe-----CC-------------------chHHHHHHHHHcCCCCHHHHHHHhh------cCCCEE
Confidence 54443 35555543311 11 1111122456677888888888753 269999
Q ss_pred EEeC---CC------CCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhcc
Q 016804 256 LYDE---PT------AGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCL 315 (382)
Q Consensus 256 LLDE---Pt------agLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~ 315 (382)
+||| |+ .++|+..+..+.+.|+++.++ + .++|+++|. .+..++++++.+
T Consensus 282 lLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~----------~~ililde~-~~~~r~~~~i~~ 340 (365)
T 1lw7_A 282 ILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYK----------VPYIEIESP-SYLDRYNQVKAV 340 (365)
T ss_dssp EEEECCCC-----------CCSHHHHHHHHHHHHHGGG----------CCCEEEECS-SHHHHHHHHHHH
T ss_pred EECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcC----------CCEEEeCCC-CHHHHHHHHHHH
Confidence 9999 65 589999999999999998654 4 489999976 577788888833
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=8.3e-19 Score=174.49 Aligned_cols=142 Identities=20% Similarity=0.200 Sum_probs=98.1
Q ss_pred eEEEEe--CCeeeeEeeeE-------EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC-ccEEEECCEECCCCCChhhhc
Q 016804 96 NVYKSF--GEKHILRGVSF-------KIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD-KGEVYIRGRKRAGLISDEEIS 165 (382)
Q Consensus 96 nvs~~y--g~~~iL~~vsl-------~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~-sG~I~i~G~~i~~~~~~~~~~ 165 (382)
.++++| .....|+++.+ .+.+|++++|+|||||||||||++|+|+++|+ +|.|...+.++ ... .
T Consensus 93 ~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e~~-----~ 166 (356)
T 3jvv_A 93 GAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-EFV-----H 166 (356)
T ss_dssp EEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-CSC-----C
T ss_pred EEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-Hhh-----h
Confidence 444454 22345666665 67889999999999999999999999999997 56665443222 111 1
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCC
Q 016804 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (382)
Q Consensus 166 ~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~ 245 (382)
....++++|........+..+ +|||||.+
T Consensus 167 ~~~~~~v~q~~~~~~~~~~~~-------------------------------------------------~La~aL~~-- 195 (356)
T 3jvv_A 167 ESKKCLVNQREVHRDTLGFSE-------------------------------------------------ALRSALRE-- 195 (356)
T ss_dssp CCSSSEEEEEEBTTTBSCHHH-------------------------------------------------HHHHHTTS--
T ss_pred hccccceeeeeeccccCCHHH-------------------------------------------------HHHHHhhh--
Confidence 112456666543222222211 99999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccc
Q 016804 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQ 317 (382)
Q Consensus 246 ~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~ 317 (382)
+|++||+|||| |.+. .+.+.++...| .++|+++|+.+.+ .++||++.|.
T Consensus 196 -----~PdvillDEp~---d~e~----~~~~~~~~~~G----------~~vl~t~H~~~~~-~~~dRli~l~ 244 (356)
T 3jvv_A 196 -----DPDIILVGEMR---DLET----IRLALTAAETG----------HLVFGTLHTTSAA-KTIDRVVDVF 244 (356)
T ss_dssp -----CCSEEEESCCC---SHHH----HHHHHHHHHTT----------CEEEEEESCSSHH-HHHHHHHHTS
T ss_pred -----CcCEEecCCCC---CHHH----HHHHHHHHhcC----------CEEEEEEccChHH-HHHHHHhhhc
Confidence 59999999999 6554 34444455666 4899999999988 7899997764
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.4e-20 Score=186.97 Aligned_cols=181 Identities=14% Similarity=0.093 Sum_probs=116.4
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcE--EEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccce
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEA--VGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~--vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~ 168 (382)
.+++++ +++|++.+ |+++||++++|++ ++|+||||||||||+|+|+|+. ++|.++....... ....
T Consensus 16 ~l~~~~-~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~--~~~~ 83 (427)
T 2qag_B 16 TVPLAG-HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGV--QLQS 83 (427)
T ss_dssp -CCCCC-CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSC--EEEE
T ss_pred eEEEee-EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccc--eEee
Confidence 477788 89998887 9999999999999 9999999999999999999994 3444432211111 1226
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCC--CC--HHHHHHHHHHHHHHc-CCcc----cccCCC-----------CCCC
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSK--MR--DEQISELVKENLAAV-GLKG----VEDRLP-----------SELS 228 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~--~~--~~~~~~~v~~~L~~~-gL~~----~~~~~~-----------~~LS 228 (382)
++|++|++.+++.+||.||+.++...... +. .+.+.+...+++... ++.. ..+.++ ..|+
T Consensus 84 i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~ 163 (427)
T 2qag_B 84 NTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLK 163 (427)
T ss_dssp EEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---C
T ss_pred EEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCC
Confidence 99999999988889999999775421000 00 011234445555554 4431 122221 2466
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHH-HHHcCCCCCCCCCCceEEEEEccCH
Q 016804 229 GGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRS-VHKKGENGLANPGNIASYVVVTHQH 303 (382)
Q Consensus 229 GGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~-l~~~g~~~~~~~~~~~tiIivTHdl 303 (382)
-.+ +.|+++|.. +++||++|||+..|.+.....+.+.+++ |...| ++|+.++.|-
T Consensus 164 ~~D---ieilk~L~~-------~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~g----------i~I~~is~~d 219 (427)
T 2qag_B 164 SLD---LVTMKKLDS-------KVNIIPIIAKADAISKSELTKFKIKITSELVSNG----------VQIYQFPTDD 219 (427)
T ss_dssp HHH---HHHHHHTCS-------CSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTB----------CCCCCCC---
T ss_pred HHH---HHHHHHHhh-------CCCEEEEEcchhccchHHHHHHHHHHHHHHHHcC----------CcEEecCCCc
Confidence 555 799999974 6999999999999999999889888886 76655 5788888753
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-21 Score=192.51 Aligned_cols=185 Identities=16% Similarity=0.141 Sum_probs=124.4
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChh--hhccce
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE--EISGLR 168 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~--~~~~~~ 168 (382)
+|++++++++|+.+.+|+++||++.+|++++|+||||||||||+++|+|++.|++|+|.+.|.++....... ...+.+
T Consensus 29 ~ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~ 108 (337)
T 2qm8_A 29 LAESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTR 108 (337)
T ss_dssp HHTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGG
T ss_pred HHeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhh
Confidence 578899999998788999999999999999999999999999999999999999999999998864321100 011235
Q ss_pred EEEEecCCCCCCCCC------------HHHHHHh-----------------------------hHhhcCCCCHHHH---H
Q 016804 169 IGLVFQSAALFDSLT------------VRENVGF-----------------------------LLYENSKMRDEQI---S 204 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lT------------V~eni~~-----------------------------~~~~~~~~~~~~~---~ 204 (382)
+++++|++.+|...+ +.|.+.. .+........++. .
T Consensus 109 i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~ 188 (337)
T 2qm8_A 109 MARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIK 188 (337)
T ss_dssp STTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CC
T ss_pred heeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHH
Confidence 899999998875321 2332211 0000000001111 0
Q ss_pred HHHHHHHHHcCCcccccC-CCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 016804 205 ELVKENLAAVGLKGVEDR-LPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHK 281 (382)
Q Consensus 205 ~~v~~~L~~~gL~~~~~~-~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~ 281 (382)
+.+.+....+.+ ...|. ...++|+|++|++..|++++.... ...+|+++. ||++|.....++++.|.++.+
T Consensus 189 ~~i~~~~~ivvl-NK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~-~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 189 KGIFELADMIAV-NKADDGDGERRASAAASEYRAALHILTPPS-ATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp TTHHHHCSEEEE-ECCSTTCCHHHHHHHHHHHHHHHTTBCCSB-TTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHhccccEEEE-EchhccCchhHHHHHHHHHHHHHHhccccc-cCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 111122222223 23343 235689999999999999985100 000378876 999999999999999998765
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.70 E-value=2.2e-20 Score=174.45 Aligned_cols=145 Identities=20% Similarity=0.193 Sum_probs=105.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHH---cCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhH
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIA---GLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLL 192 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~---Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~ 192 (382)
++++++|+||||||||||+++|+ |+..|++|+|.++|.+.. .. . ...+++++|+..+++..++.+++...+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~---~~--~-~~~i~~~~~~~~~~~~~~v~~~l~~~l 99 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS---TE--V-GEMAKQYIEKSLLVPDHVITRLMMSEL 99 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT---CH--H-HHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC---Ch--H-HHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 47999999999999999999999 999999999998875421 11 1 113566788888888889999997643
Q ss_pred hh-------cCCCCHHHHHHHHHHHH--HHcC------------CcccccCCCCCCChHHHHHHHHHHHH-hcCCCCCCC
Q 016804 193 YE-------NSKMRDEQISELVKENL--AAVG------------LKGVEDRLPSELSGGMKKRVALARSI-IFDNTKESV 250 (382)
Q Consensus 193 ~~-------~~~~~~~~~~~~v~~~L--~~~g------------L~~~~~~~~~~LSGGqrQRVaIArAL-~~~~~~~a~ 250 (382)
.. ..+..... .+++.+. ..++ +....++++.+||| |+ +|| +.
T Consensus 100 ~~~~~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~------- 163 (246)
T 2bbw_A 100 ENRRGQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFN------- 163 (246)
T ss_dssp HTCTTSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTS-------
T ss_pred HhcCCCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccC-------
Confidence 21 11122111 1222222 1233 33445777889999 66 777 54
Q ss_pred CCcEEEEe----CCCCCCCHHHHHHHHHHHHHHHHc
Q 016804 251 EPEVLLYD----EPTAGLDPIASTVVEDLIRSVHKK 282 (382)
Q Consensus 251 ~P~iLLLD----EPtagLD~~~~~~l~~lL~~l~~~ 282 (382)
+|++++|| |||++||+.++..+.+.|+++.++
T Consensus 164 ~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~ 199 (246)
T 2bbw_A 164 PPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDV 199 (246)
T ss_dssp CCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHH
T ss_pred CCcccccccccccccccCCCCcHHHHHHHHHHHHHh
Confidence 79999999 999999999999999999988765
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.70 E-value=9.7e-21 Score=168.67 Aligned_cols=141 Identities=17% Similarity=0.114 Sum_probs=94.0
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhH
Q 016804 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLL 192 (382)
Q Consensus 113 ~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~ 192 (382)
.+++|++++|+||||||||||+++|+|+ |+.|.|.++|.++..... .+..++|++|+.. +..++.+|+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~----~~~~~~~~~~~~~--~~~~v~~~l~~~~ 76 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK----HGRIDPWLPQSHQ--QNRMIMQIAADVA 76 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC----SSCCCTTSSSHHH--HHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh----cccccCCccchhh--hhHHHHHHHHHHH
Confidence 4789999999999999999999999998 789999999866421110 1123577777654 3468899987643
Q ss_pred hhc--CCCCHHHHHHHHHHHHHHcCCcccc--cCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHH
Q 016804 193 YEN--SKMRDEQISELVKENLAAVGLKGVE--DRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIA 268 (382)
Q Consensus 193 ~~~--~~~~~~~~~~~v~~~L~~~gL~~~~--~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~ 268 (382)
... .+.. . .++.+++.+++..+. +..+..+|+|++||+++||++.+ +|+++ +|+..
T Consensus 77 ~~~~~~~~~-~----~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r-------~~~~l--------ld~~~ 136 (191)
T 1zp6_A 77 GRYAKEGYF-V----ILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDR-------GGDSL--------SDPLV 136 (191)
T ss_dssp HHHHHTSCE-E----EECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTT-------CTTSC--------CCHHH
T ss_pred HHHhccCCe-E----EEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhc-------CCCcc--------CCHHH
Confidence 211 0000 0 001111112232222 44567899999999999999986 47765 68888
Q ss_pred HHHHHHHHHHHHH
Q 016804 269 STVVEDLIRSVHK 281 (382)
Q Consensus 269 ~~~l~~lL~~l~~ 281 (382)
...+.+.+..+..
T Consensus 137 ~~~~~~~~~~l~~ 149 (191)
T 1zp6_A 137 VADLHSQFADLGA 149 (191)
T ss_dssp HHHHHHHTTCCGG
T ss_pred HHHHHHHHhccCc
Confidence 8878777766643
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.69 E-value=3.1e-20 Score=165.87 Aligned_cols=172 Identities=14% Similarity=0.054 Sum_probs=110.4
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcC
Q 016804 117 GEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENS 196 (382)
Q Consensus 117 Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~ 196 (382)
|++++|+||||||||||+++|++ |.+|.++++|.++.. ...+++++|....++..++++|+.+......
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 70 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINH--------MVVGGYRPPWESDELLALTWKNITDLTVNFL 70 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHT--------TCCTTCCCGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhh--------hhccccccCccchhHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999997 678999999865421 1135677776544445678888866432110
Q ss_pred CCCHHHHHHHHHHHHHHcCCcccccCCCCCC--ChHHHHHHHHHH------HHhcCCCCCCCCCcEEEEeCCCCCCCHHH
Q 016804 197 KMRDEQISELVKENLAAVGLKGVEDRLPSEL--SGGMKKRVALAR------SIIFDNTKESVEPEVLLYDEPTAGLDPIA 268 (382)
Q Consensus 197 ~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~L--SGGqrQRVaIAr------AL~~~~~~~a~~P~iLLLDEPtagLD~~~ 268 (382)
.... ..+++.+. .....+...++ |+||+|++.++. +++. +|+...+|+ +||+..
T Consensus 71 ~~~~-------~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~-------R~~~r~~d~---~ld~~~ 132 (189)
T 2bdt_A 71 LAQN-------DVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWTNREELLR-------RDALRKKDE---QMGERC 132 (189)
T ss_dssp HTTC-------EEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHH-------HTTTSCC-------CGGG
T ss_pred hcCC-------cEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHH-------HHHhccccc---cCCHHH
Confidence 0000 00011110 00000111234 889988988887 8876 477777784 899988
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccC-HHHHHHhhchhccccccccchheehhccCCCCcccccccEEEEEe
Q 016804 269 STVVEDLIRSVHKKGENGLANPGNIASYVVVTHQ-HSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLY 347 (382)
Q Consensus 269 ~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHd-l~~~~~~aDrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~ 347 (382)
... ++.+.++.+.+ .++|.+||. ++++.++||+| + +
T Consensus 133 ~~~-~~~~~~~~~~~----------~~ii~tsh~~~~~~e~~~~~i------------------------------~--~ 169 (189)
T 2bdt_A 133 LEL-VEEFESKGIDE----------RYFYNTSHLQPTNLNDIVKNL------------------------------K--T 169 (189)
T ss_dssp GHH-HHHHHHTTCCT----------TSEEECSSSCGGGHHHHHHHH------------------------------H--H
T ss_pred HHH-HHHHhhcCCCc----------cEEEeCCCCChhhHHHHHHHH------------------------------h--h
Confidence 877 77887775443 489999999 99999999999 5 8
Q ss_pred CCeEEEEeccccc
Q 016804 348 EGKIVWQGMTHEF 360 (382)
Q Consensus 348 ~G~i~~~g~~~~~ 360 (382)
+|+++.+|+++-+
T Consensus 170 ~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 170 NPRFIFCMAGDPL 182 (189)
T ss_dssp CGGGSCC------
T ss_pred CCcEEEeecCCch
Confidence 9999999966543
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-18 Score=162.34 Aligned_cols=129 Identities=13% Similarity=0.171 Sum_probs=89.8
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC--CccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCH----H
Q 016804 112 FKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP--DKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTV----R 185 (382)
Q Consensus 112 l~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p--~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV----~ 185 (382)
-..++|++++|+||||||||||+++|+|+++| .+|.|.+.+++... . .+..++|+||++.+|+.+++ .
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~--e~~gi~y~fq~~~~f~~~~~~~~f~ 84 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----G--EVHGEHYFFVNHDEFKEMISRDAFL 84 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----T--CCBTTTBEECCHHHHHHHHHTTCEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----c--cccCceEEECCHHHHHHHHhcCHHH
Confidence 45789999999999999999999999999986 68999998865321 1 12258999998877765555 3
Q ss_pred HHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCC
Q 016804 186 ENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265 (382)
Q Consensus 186 eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD 265 (382)
||+.+... +.|-.+++ +..+|- +++++||| ||
T Consensus 85 E~~~~~~~---------------------------------~yg~~~~~--v~~~l~--------~G~illLD-----LD 116 (219)
T 1s96_A 85 EHAEVFGN---------------------------------YYGTSREA--IEQVLA--------TGVDVFLD-----ID 116 (219)
T ss_dssp EEEEETTE---------------------------------EEEEEHHH--HHHHHT--------TTCEEEEE-----CC
T ss_pred HHHHHHhc---------------------------------cCCCCHHH--HHHHHh--------cCCeEEEE-----EC
Confidence 33322110 00000111 223332 48999999 99
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHH
Q 016804 266 PIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRR 308 (382)
Q Consensus 266 ~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~ 308 (382)
+.....+.+.+. ++ .||+++||+++++.+
T Consensus 117 ~~~~~~i~~~l~----~~----------~tI~i~th~~~~l~~ 145 (219)
T 1s96_A 117 WQGAQQIRQKMP----HA----------RSIFILPPSKIELDR 145 (219)
T ss_dssp HHHHHHHHHHCT----TC----------EEEEEECSSHHHHHH
T ss_pred HHHHHHHHHHcc----CC----------EEEEEECCCHHHHHH
Confidence 999999998876 34 699999999998765
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.68 E-value=9.2e-17 Score=144.60 Aligned_cols=79 Identities=27% Similarity=0.355 Sum_probs=65.8
Q ss_pred ccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEE
Q 016804 220 EDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVV 299 (382)
Q Consensus 220 ~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIiv 299 (382)
..+.+..||||||||++|||+|+..+ ...|+++||||||++||+.++..+.++|+++.++ .++|++
T Consensus 58 ~~~~~~~LSgGekqr~ala~~la~~~---~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~-----------~~~ivi 123 (173)
T 3kta_B 58 DVKRIEAMSGGEKALTALAFVFAIQK---FKPAPFYLFDEIDAHLDDANVKRVADLIKESSKE-----------SQFIVI 123 (173)
T ss_dssp SCCCGGGCCHHHHHHHHHHHHHHHHH---HSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTT-----------SEEEEE
T ss_pred cccccccCCHHHHHHHHHHHHHHhcc---cCCCCEEEECCCccCCCHHHHHHHHHHHHHhccC-----------CEEEEE
Confidence 45567899999999999999997310 0137999999999999999999999999998654 389999
Q ss_pred ccCHHHHHHhhchh
Q 016804 300 THQHSTIRRAVDRL 313 (382)
Q Consensus 300 THdl~~~~~~aDrv 313 (382)
||+... ...||++
T Consensus 124 th~~~~-~~~ad~i 136 (173)
T 3kta_B 124 TLRDVM-MANADKI 136 (173)
T ss_dssp CSCHHH-HTTCSEE
T ss_pred EecHHH-HHhCCEE
Confidence 999765 4689988
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.68 E-value=7.7e-18 Score=167.70 Aligned_cols=123 Identities=24% Similarity=0.188 Sum_probs=94.6
Q ss_pred eeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-CCccEEEEC-CEECCCCCChhhhccceEEEEecCCCCCCCCC
Q 016804 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-PDKGEVYIR-GRKRAGLISDEEISGLRIGLVFQSAALFDSLT 183 (382)
Q Consensus 106 iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~-p~sG~I~i~-G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lT 183 (382)
-++++++. .+|++++|+||||||||||+|+|+|+.+ |++|+|.++ |+.... ....++++++|+..+++..+
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~t------t~~~~i~~v~q~~~l~dtpg 277 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHT------TTAARLYHFPHGGDVIDSPG 277 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------------CCCEEEECTTSCEEEECHH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccc------eEEEEEEEECCCCEecCccc
Confidence 45666664 4899999999999999999999999999 999999997 764321 12336999999999998888
Q ss_pred HHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHh
Q 016804 184 VRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSII 242 (382)
Q Consensus 184 V~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~ 242 (382)
++++ ++ .....++..+.+.++++.+|+.++.++++.+|| ||+||++||++++
T Consensus 278 v~e~---~l---~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 278 VREF---GL---WHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp HHTC---CC---CCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred HHHh---hh---cCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcCC
Confidence 8884 22 234566667778889999999999999999999 9999999999997
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.68 E-value=8.7e-20 Score=161.81 Aligned_cols=92 Identities=18% Similarity=0.175 Sum_probs=76.8
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
++.++++++|+++.+++++||++++|++++|+||||||||||+|+|+|++ |++|+|.++|.++.. .... + + +
T Consensus 8 ~~~~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~---~~~~-~-~--~ 79 (158)
T 1htw_A 8 IPDEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVE---EYNI-A-G--K 79 (158)
T ss_dssp ECSHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEE---EEEE-T-T--E
T ss_pred cCCHHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeee---eccC-C-C--c
Confidence 44567788898888999999999999999999999999999999999999 999999999976531 1111 1 2 7
Q ss_pred EecCCCCCCCCCHHHHHHh-hH
Q 016804 172 VFQSAALFDSLTVRENVGF-LL 192 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~-~~ 192 (382)
++|++.+| .+|+.||+.+ ++
T Consensus 80 ~~q~~~l~-~ltv~e~l~~~g~ 100 (158)
T 1htw_A 80 MIYHFDLY-RLADPEELEFMGI 100 (158)
T ss_dssp EEEEEECT-TCSCTTHHHHSTH
T ss_pred ceeccccc-cCCcHHHHHHcCh
Confidence 99999999 7999999954 44
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.67 E-value=7.9e-19 Score=181.20 Aligned_cols=166 Identities=14% Similarity=0.143 Sum_probs=112.6
Q ss_pred eEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCC----hhhhccceEEEEecCCCCCCCC
Q 016804 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS----DEEISGLRIGLVFQSAALFDSL 182 (382)
Q Consensus 107 L~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~----~~~~~~~~Ig~V~Q~~~l~~~l 182 (382)
-+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.+...... ..+..+.+|+|++|+..+++.+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 468999999999999999999999999999999999999999998876532100 0111233599999999888888
Q ss_pred CHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCC-cEEEEeCCC
Q 016804 183 TVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEP-EVLLYDEPT 261 (382)
Q Consensus 183 TV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P-~iLLLDEPt 261 (382)
++++|+.++... +.+- -+++..|+......++.+| +|++.++|++.. ..| ++||...|+
T Consensus 363 tV~e~l~~a~~~--~~Dv--------VLIDTaGrl~~~~~lm~EL----~kiv~iar~l~~------~~P~evLLvLDat 422 (503)
T 2yhs_A 363 VIFDAIQAAKAR--NIDV--------LIADTAGRLQNKSHLMEEL----KKIVRVMKKLDV------EAPHEVMLTIDAS 422 (503)
T ss_dssp HHHHHHHHHHHT--TCSE--------EEECCCCSCCCHHHHHHHH----HHHHHHHHTTCT------TCSSEEEEEEEGG
T ss_pred HHHHHHHHHHhc--CCCE--------EEEeCCCccchhhhHHHHH----HHHHHHHHHhcc------CCCCeeEEEecCc
Confidence 999999886532 1110 0233334332222222233 488999998753 246 466566688
Q ss_pred CCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHh
Q 016804 262 AGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRA 309 (382)
Q Consensus 262 agLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~ 309 (382)
+|.|.. +.++.+++. + .|.|++|| ++...+.
T Consensus 423 tGq~al------~~ak~f~~~~~----------itgvIlTK-LD~takg 454 (503)
T 2yhs_A 423 TGQNAV------SQAKLFHEAVG----------LTGITLTK-LDGTAKG 454 (503)
T ss_dssp GTHHHH------HHHHHHHHHTC----------CSEEEEEC-GGGCSCC
T ss_pred ccHHHH------HHHHHHHhhcC----------CCEEEEEc-CCCcccc
Confidence 886654 335555544 3 48899999 4443333
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.8e-18 Score=168.22 Aligned_cols=149 Identities=17% Similarity=0.242 Sum_probs=108.5
Q ss_pred EEEeEEEE---eCC--eeee---------EeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCC
Q 016804 93 DCRNVYKS---FGE--KHIL---------RGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGL 158 (382)
Q Consensus 93 ~~~nvs~~---yg~--~~iL---------~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~ 158 (382)
++++++|+ |++ ..+| +++||.+++|++++|+||||||||||+++|+|+++|++|.|+++|.. .+
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~--e~ 214 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVP--EL 214 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSS--CC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCcc--cc
Confidence 67788887 753 3455 99999999999999999999999999999999999999999999852 21
Q ss_pred CChhhhccceEEEEe-cCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHH
Q 016804 159 ISDEEISGLRIGLVF-QSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVAL 237 (382)
Q Consensus 159 ~~~~~~~~~~Ig~V~-Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaI 237 (382)
.... .+..++|++ |++.+ .++++..+|..|
T Consensus 215 ~~~~--~~~~v~~v~~q~~~~-----------------------------------------------~~~~~~t~~~~i 245 (361)
T 2gza_A 215 FLPD--HPNHVHLFYPSEAKE-----------------------------------------------EENAPVTAATLL 245 (361)
T ss_dssp CCTT--CSSEEEEECC---------------------------------------------------------CCHHHHH
T ss_pred Cccc--cCCEEEEeecCcccc-----------------------------------------------ccccccCHHHHH
Confidence 1111 233689998 65431 012333477888
Q ss_pred HHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccc
Q 016804 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQ 317 (382)
Q Consensus 238 ArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~ 317 (382)
+.++.. +|+.+++||+.. .++.+.|+.+.. |+ .|++.++|..+ +...+||+..+.
T Consensus 246 ~~~l~~-------~pd~~l~~e~r~-------~~~~~~l~~l~~-g~---------~~~l~t~H~~~-~~~~~~Rl~~l~ 300 (361)
T 2gza_A 246 RSCLRM-------KPTRILLAELRG-------GEAYDFINVAAS-GH---------GGSITSCHAGS-CELTFERLALMV 300 (361)
T ss_dssp HHHTTS-------CCSEEEESCCCS-------THHHHHHHHHHT-TC---------CSCEEEEECSS-HHHHHHHHHHHH
T ss_pred HHHHhc-------CCCEEEEcCchH-------HHHHHHHHHHhc-CC---------CeEEEEECCCC-HHHHHHHHHHHH
Confidence 888864 699999999986 345667777754 32 37899999965 788899996654
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.66 E-value=4.9e-18 Score=167.15 Aligned_cols=149 Identities=13% Similarity=0.108 Sum_probs=104.8
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhh----hccceEEEEecCCCCCCCCCHHHHHH
Q 016804 114 IRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE----ISGLRIGLVFQSAALFDSLTVRENVG 189 (382)
Q Consensus 114 i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~----~~~~~Ig~V~Q~~~l~~~lTV~eni~ 189 (382)
.++|++++|+||||||||||+++|+|+++|++|+|.+.|.++........ ..+..+.+++|...++|.++|++|+.
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~ 205 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQ 205 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHH
Confidence 47899999999999999999999999999999999999998754321111 12234779999999999999999998
Q ss_pred hhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHH
Q 016804 190 FLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAS 269 (382)
Q Consensus 190 ~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~ 269 (382)
++..... +. -+++..|+.+.....+.+|| .++|++.. ++++++||.++.
T Consensus 206 ~~~~~~~--d~--------vliDtaG~~~~~~~l~~eL~-------~i~ral~~-------de~llvLDa~t~------- 254 (328)
T 3e70_C 206 HAKARGI--DV--------VLIDTAGRSETNRNLMDEMK-------KIARVTKP-------NLVIFVGDALAG------- 254 (328)
T ss_dssp HHHHHTC--SE--------EEEEECCSCCTTTCHHHHHH-------HHHHHHCC-------SEEEEEEEGGGT-------
T ss_pred HHHhccc--hh--------hHHhhccchhHHHHHHHHHH-------HHHHHhcC-------CCCEEEEecHHH-------
Confidence 7542111 00 01333444433334444444 48999975 478888886654
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCceEEEEEccC
Q 016804 270 TVVEDLIRSVHKKGENGLANPGNIASYVVVTHQ 302 (382)
Q Consensus 270 ~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHd 302 (382)
..+.+.++.+.+.-. .|+|++||.
T Consensus 255 ~~~~~~~~~~~~~~~---------it~iilTKl 278 (328)
T 3e70_C 255 NAIVEQARQFNEAVK---------IDGIILTKL 278 (328)
T ss_dssp THHHHHHHHHHHHSC---------CCEEEEECG
T ss_pred HHHHHHHHHHHHhcC---------CCEEEEeCc
Confidence 355566677765421 589999994
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=9.2e-17 Score=145.19 Aligned_cols=152 Identities=14% Similarity=0.143 Sum_probs=95.5
Q ss_pred eeeEeeeE-EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCC
Q 016804 105 HILRGVSF-KIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLT 183 (382)
Q Consensus 105 ~iL~~vsl-~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lT 183 (382)
+.|+.+.. .+++|++++|+||||||||||++.|++ .+..+ +.|+..+..+ +
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~----------------------v~~i~~~~~~----~ 58 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKK----------------------VAYVDTEGGF----S 58 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSE----------------------EEEEESSCCC----C
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCc----------------------EEEEECCCCC----C
Confidence 34555554 689999999999999999999999999 22222 3333322211 1
Q ss_pred HHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHH--HHHHHHHHHHhcCCCCCCCCCcEEEEeCCC
Q 016804 184 VRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGM--KKRVALARSIIFDNTKESVEPEVLLYDEPT 261 (382)
Q Consensus 184 V~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGq--rQRVaIArAL~~~~~~~a~~P~iLLLDEPt 261 (382)
. +.+.-.. ...+...+ ++++.+ .+.++|+++ +|+++.+++++.+ +|+++++||||
T Consensus 59 ~-~~~~~~~-~~~~~~~~-------~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~------~~~lliiD~~~ 115 (220)
T 2cvh_A 59 P-ERLVQMA-ETRGLNPE-------EALSRF--------ILFTPSDFKEQRRVIGSLKKTVDS------NFALVVVDSIT 115 (220)
T ss_dssp H-HHHHHHH-HTTTCCHH-------HHHHHE--------EEECCTTTSHHHHHHHHHHHHCCT------TEEEEEEECCC
T ss_pred H-HHHHHHH-HhcCCChH-------HHhhcE--------EEEecCCHHHHHHHHHHHHHHhhc------CCCEEEEcCcH
Confidence 1 1111100 01112211 122222 223445554 5688888899851 49999999999
Q ss_pred CCCCHHH--------HHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHH-------------HHHHhhchhcccc
Q 016804 262 AGLDPIA--------STVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHS-------------TIRRAVDRLCLFQ 317 (382)
Q Consensus 262 agLD~~~--------~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~-------------~~~~~aDrv~~~~ 317 (382)
+.+|+.. ...+.+.|+++.++ + .|+|+++|... .+..+||++++|+
T Consensus 116 ~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~----------~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~ 183 (220)
T 2cvh_A 116 AHYRAEENRSGLIAELSRQLQVLLWIARKHN----------IPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLD 183 (220)
T ss_dssp CCTTGGGGSSTTHHHHHHHHHHHHHHHHHHT----------CCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEE
T ss_pred HHhhhcCchHHHHHHHHHHHHHHHHHHHHcC----------CEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEE
Confidence 9999743 24455667777665 4 58999999865 5678888885554
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.9e-18 Score=164.17 Aligned_cols=123 Identities=20% Similarity=0.117 Sum_probs=88.1
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEE---CCEECCCCCChhhhccceEEEEecCCCCC-----CCCCH
Q 016804 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI---RGRKRAGLISDEEISGLRIGLVFQSAALF-----DSLTV 184 (382)
Q Consensus 113 ~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i---~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~-----~~lTV 184 (382)
++.+|++++|+||||||||||+|+|+ +.+|++|+|.+ +|+++.... ......++|||+|+|.+. +.+|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~--~~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGV--RLIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCE--EEEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeE--EEEEcCCCcEEEECcCcCcCcccccCCH
Confidence 44579999999999999999999999 99999999999 898764321 111112489999998653 67899
Q ss_pred HHHH--Hhh----Hh-hcCC-CCHHHHHHHHHHHHHHcCCcc-cccCCCCCCChHHHHHHHHHH
Q 016804 185 RENV--GFL----LY-ENSK-MRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALAR 239 (382)
Q Consensus 185 ~eni--~~~----~~-~~~~-~~~~~~~~~v~~~L~~~gL~~-~~~~~~~~LSGGqrQRVaIAr 239 (382)
+|+ .|+ +. ...+ ....+...++.++++.++|.+ ..++++..|||.+++++.|||
T Consensus 238 -e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred -HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888 454 10 1111 222233456889999999986 789999999999999999987
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.2e-20 Score=182.32 Aligned_cols=159 Identities=16% Similarity=0.164 Sum_probs=106.7
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCC--------CCCccEEEECCEECCCCCC--------------hhhhccceEEEE---
Q 016804 118 EAVGIIGPSGTGKSTILKIIAGLL--------APDKGEVYIRGRKRAGLIS--------------DEEISGLRIGLV--- 172 (382)
Q Consensus 118 e~vaLiGpNGaGKSTLLklI~Gl~--------~p~sG~I~i~G~~i~~~~~--------------~~~~~~~~Ig~V--- 172 (382)
++++|+|+||||||||+|.|+|+. .|+.|+|.+||.++..... ..+. ...++++
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~-~~~l~~l~~~ 83 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNEL-EDALLDLLDN 83 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCH-HHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHH-HHHHHHHHhH
Confidence 589999999999999999999997 7899999999998754311 0111 1137777
Q ss_pred ecCCCCCCCCCHHHHHHhhHhhc--CCC-CHHHHH--HHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 016804 173 FQSAALFDSLTVRENVGFLLYEN--SKM-RDEQIS--ELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (382)
Q Consensus 173 ~Q~~~l~~~lTV~eni~~~~~~~--~~~-~~~~~~--~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~ 247 (382)
+|++.+++..++.||+.++.... ... ...... ..+..++..+++.++.++++ +||+||+||+..+++++.
T Consensus 84 ~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~-~ls~g~~Q~~~ad~ill~---- 158 (318)
T 1nij_A 84 LDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN-QFTIAQSQVGYADRILLT---- 158 (318)
T ss_dssp HHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH-HCHHHHHHHHTCSEEEEE----
T ss_pred HhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh-hchHHHHHHHhCCEEEEE----
Confidence 68877666678888876531000 000 000000 01112334455555554444 799999999998899886
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHH
Q 016804 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIR 307 (382)
Q Consensus 248 ~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~ 307 (382)
+|+++ ||| .++.+.|++++ .+ ++|+++||+...+.
T Consensus 159 ---k~dl~--de~---------~~l~~~l~~l~-~~----------~~ii~~sh~~~~~~ 193 (318)
T 1nij_A 159 ---KTDVA--GEA---------EKLHERLARIN-AR----------APVYTVTHGDIDLG 193 (318)
T ss_dssp ---CTTTC--SCT---------HHHHHHHHHHC-SS----------SCEEECCSSCCCGG
T ss_pred ---CcccC--CHH---------HHHHHHHHHhC-CC----------CeEEEecccCCCHH
Confidence 58877 998 67788888875 33 58999999744333
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=7.6e-17 Score=160.93 Aligned_cols=131 Identities=18% Similarity=0.224 Sum_probs=96.3
Q ss_pred eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC-ccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCC
Q 016804 105 HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD-KGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLT 183 (382)
Q Consensus 105 ~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~-sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lT 183 (382)
.+|++++ +++|++++|+||||||||||+++|+|+++|+ +|+|.+.|.++. + ..+..++||+|..
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~-----~~~~~~~~v~Q~~------- 190 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y-----VFKHKKSIVNQRE------- 190 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S-----CCCCSSSEEEEEE-------
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h-----hhccCceEEEeee-------
Confidence 3566665 7899999999999999999999999999998 899987765432 1 1123578888841
Q ss_pred HHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCC
Q 016804 184 VRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAG 263 (382)
Q Consensus 184 V~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtag 263 (382)
+|++ +..| +.+|+++|.. +|++|++|||+
T Consensus 191 ------------------------------~g~~------~~~~------~~~l~~~L~~-------~pd~illdE~~-- 219 (372)
T 2ewv_A 191 ------------------------------VGED------TKSF------ADALRAALRE-------DPDVIFVGEMR-- 219 (372)
T ss_dssp ------------------------------BTTT------BSCS------HHHHHHHTTS-------CCSEEEESCCC--
T ss_pred ------------------------------cCCC------HHHH------HHHHHHHhhh-------CcCEEEECCCC--
Confidence 2221 1233 4699999986 69999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccc
Q 016804 264 LDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQ 317 (382)
Q Consensus 264 LD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~ 317 (382)
|+... ..+++.. ..| .+++.++|+.+ +..++||++.|.
T Consensus 220 -d~e~~---~~~l~~~-~~g----------~~vi~t~H~~~-~~~~~~rl~~l~ 257 (372)
T 2ewv_A 220 -DLETV---ETALRAA-ETG----------HLVFGTLHTNT-AIDTIHRIVDIF 257 (372)
T ss_dssp -SHHHH---HHHHHHH-TTT----------CEEEECCCCCS-HHHHHHHHHHTS
T ss_pred -CHHHH---HHHHHHH-hcC----------CEEEEEECcch-HHHHHHHHHHhc
Confidence 77653 3444443 345 48999999966 788999986553
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.59 E-value=3.3e-16 Score=143.63 Aligned_cols=42 Identities=26% Similarity=0.351 Sum_probs=35.6
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHc--CCCC-----CccEEEECCEE
Q 016804 113 KIRHGEAVGIIGPSGTGKSTILKIIAG--LLAP-----DKGEVYIRGRK 154 (382)
Q Consensus 113 ~i~~Ge~vaLiGpNGaGKSTLLklI~G--l~~p-----~sG~I~i~G~~ 154 (382)
-|++|++++|+||||||||||++.|++ +.+| ..|.+++++.+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 489999999999999999999999999 6665 56777777653
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-17 Score=149.98 Aligned_cols=139 Identities=17% Similarity=0.152 Sum_probs=83.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCCCC---ccEEEECCEECCCCC---ChhhhccceEE----EEecCCCCCCCCCHHHH
Q 016804 118 EAVGIIGPSGTGKSTILKIIAGLLAPD---KGEVYIRGRKRAGLI---SDEEISGLRIG----LVFQSAALFDSLTVREN 187 (382)
Q Consensus 118 e~vaLiGpNGaGKSTLLklI~Gl~~p~---sG~I~i~G~~i~~~~---~~~~~~~~~Ig----~V~Q~~~l~~~lTV~en 187 (382)
++++|+|+||||||||+++|+|+++|+ .|+|.++|.++.... .+.++ ..++| +++|++.+|- .+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r-~~~ig~~~~~~~~~~~~~i----~~- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWK-IYNSGADVVIASPVKLAFI----RR- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHH-HHHHTCEEEEECSSEEEEE----EE-
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHH-HHhcCCceEEECCCcEEEE----ec-
Confidence 589999999999999999999999998 899999998865432 22221 11355 8899887661 00
Q ss_pred HHhhHhhcCCCCHHHHHHHHHHHHHH-c-CCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEE-------EEe
Q 016804 188 VGFLLYENSKMRDEQISELVKENLAA-V-GLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVL-------LYD 258 (382)
Q Consensus 188 i~~~~~~~~~~~~~~~~~~v~~~L~~-~-gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iL-------LLD 258 (382)
...+ ....+.+.++. + |++...- ..|||||+||++||||++.+ |++. +=|
T Consensus 77 ----------~~~~-~~a~l~~~i~~~l~g~dt~i~---EglSgGq~qri~lARall~~-------p~i~~~~~~a~~~~ 135 (171)
T 2f1r_A 77 ----------VSEE-EGNDLDWIYERYLSDYDLVIT---EGFSKAGKDRIVVVKKPEEV-------EHFRQGRILAVVCD 135 (171)
T ss_dssp ----------CCHH-HHTCHHHHHHHHTTTCSEEEE---ESCGGGCCCEEEECSSGGGG-------GGGCSSCEEEEECS
T ss_pred ----------CChh-hhhCHHHHHHhhCCCCCEEEE---CCcCCCCCcEEEEEecccCC-------CccCccceEEEEec
Confidence 0111 01123334443 3 4443222 24999999999999999985 5542 235
Q ss_pred CCCCC---CCHHHHHHHHHHHHHHHHcC
Q 016804 259 EPTAG---LDPIASTVVEDLIRSVHKKG 283 (382)
Q Consensus 259 EPtag---LD~~~~~~l~~lL~~l~~~g 283 (382)
.|..+ +|......+.+.+.+..++|
T Consensus 136 ~~~~~~~~f~~~~~~~~a~~i~~~~~~~ 163 (171)
T 2f1r_A 136 ERVDGHKWFRRDEVERIAEFILSLLREG 163 (171)
T ss_dssp SCCSSSCEECTTCHHHHHHHHHHHHTC-
T ss_pred CCcccCcccCcccHHHHHHHHHHHHhcc
Confidence 54322 33445567777777666665
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.57 E-value=2.3e-17 Score=159.69 Aligned_cols=111 Identities=20% Similarity=0.142 Sum_probs=77.4
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEE---CCEECCCCCChhhhccceEEEEecCCC-----------
Q 016804 112 FKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI---RGRKRAGLISDEEISGLRIGLVFQSAA----------- 177 (382)
Q Consensus 112 l~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i---~G~~i~~~~~~~~~~~~~Ig~V~Q~~~----------- 177 (382)
|++..|++++|+||||||||||+|+|+|+.+|++|+|.+ +|+++..... .....++|||+|.|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~--~~~~~~~g~v~q~p~~~~~~~~~~~~ 241 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQ--LLKFDFGGYVVDTPGFANLEINDIEP 241 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCC--EEECTTSCEEESSCSSTTCCCCSSCH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeE--EEEcCCCCEEEECcCCCccCCCcCCH
Confidence 345679999999999999999999999999999999999 8988654321 111124899999985
Q ss_pred -----CCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCCh
Q 016804 178 -----LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSG 229 (382)
Q Consensus 178 -----l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-~~~~~~~~~LSG 229 (382)
+|+.+|+ +|+.|+...+ ..+...++.++|+.++|. +..+++|.+||+
T Consensus 242 ~~~~~l~~~~~~-~n~~~~~~~~----~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 242 EELKHYFKEFGD-KQCFFSDCNH----VDEPECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp HHHGGGSTTSSS-CCCSSTTCCS----SSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccc-ccCcCCCCcC----CCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 5888999 9998853211 122345688999999995 788999999985
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=7e-19 Score=178.49 Aligned_cols=152 Identities=18% Similarity=0.196 Sum_probs=106.7
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChh-h-hccce
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE-E-ISGLR 168 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~-~-~~~~~ 168 (382)
.++++++++.|+...+|+++ +. .+|++++|+|||||||||||++|+|+++|++|+|.+.+.++....... . ....+
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~ 220 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPR 220 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGG
T ss_pred CCCHHHcCCCHHHHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccc
Confidence 46677888888767788888 64 899999999999999999999999999999999999987653211100 0 01113
Q ss_pred EEEEe---------cCCCC--CCC----CCHHHHHHhhHhhcC---CCCHHHHHHHHHHHHHHcCCcccccCCCCCCChH
Q 016804 169 IGLVF---------QSAAL--FDS----LTVRENVGFLLYENS---KMRDEQISELVKENLAAVGLKGVEDRLPSELSGG 230 (382)
Q Consensus 169 Ig~V~---------Q~~~l--~~~----lTV~eni~~~~~~~~---~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGG 230 (382)
+++.| |+|.+ +.. .|+.+++.+....+. ........+ +.+.|..+|+.... .+.+||||
T Consensus 221 ~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~-~i~rL~~lgl~~~~--~~~~LSgg 297 (418)
T 1p9r_A 221 VDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVG-AVTRLRDMGIEPFL--ISSSLLGV 297 (418)
T ss_dssp GTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHH-HHHHHHHHTCCHHH--HHHHEEEE
T ss_pred cCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHH-HHHHHHHcCCcHHH--HHHHHHHH
Confidence 55655 98875 333 589999987542211 001111112 22357778887653 67899999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCcEEE
Q 016804 231 MKKRVALARSIIFDNTKESVEPEVLL 256 (382)
Q Consensus 231 qrQRVaIArAL~~~~~~~a~~P~iLL 256 (382)
|+|| |||+|+. +|++..
T Consensus 298 ~~QR--LaraL~~-------~p~~~~ 314 (418)
T 1p9r_A 298 LAQR--LVRTLCP-------DCKEPY 314 (418)
T ss_dssp EEEE--EEEEECT-------TTCEEE
T ss_pred HHHH--hhhhhcC-------CCCccC
Confidence 9999 9999986 699865
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.9e-15 Score=133.90 Aligned_cols=112 Identities=15% Similarity=0.207 Sum_probs=76.1
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHh
Q 016804 111 SFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGF 190 (382)
Q Consensus 111 sl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~ 190 (382)
+|++++|+.++|+||||||||||+++|++.+.|++|.. +.| .+..+.+..
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~--------------------~~~----------~~~~~~~~~ 81 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR--------------------GYF----------FDTKDLIFR 81 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC--------------------CCE----------EEHHHHHHH
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe--------------------EEE----------EEHHHHHHH
Confidence 45677899999999999999999999999887655421 111 123333221
Q ss_pred hHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCC-CCCHHHH
Q 016804 191 LLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA-GLDPIAS 269 (382)
Q Consensus 191 ~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPta-gLD~~~~ 269 (382)
. ......-.. + .+...+. +|++|+||||++ ++|+..+
T Consensus 82 ~----------------~~~~~~~~~----------------~--~~~~~~~--------~~~llilDE~~~~~~~~~~~ 119 (180)
T 3ec2_A 82 L----------------KHLMDEGKD----------------T--KFLKTVL--------NSPVLVLDDLGSERLSDWQR 119 (180)
T ss_dssp H----------------HHHHHHTCC----------------S--HHHHHHH--------TCSEEEEETCSSSCCCHHHH
T ss_pred H----------------HHHhcCchH----------------H--HHHHHhc--------CCCEEEEeCCCCCcCCHHHH
Confidence 1 011110000 0 1122232 499999999995 9999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHH
Q 016804 270 TVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS 304 (382)
Q Consensus 270 ~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~ 304 (382)
..+.+++.+..+++ .++|++||...
T Consensus 120 ~~l~~ll~~~~~~~----------~~ii~tsn~~~ 144 (180)
T 3ec2_A 120 ELISYIITYRYNNL----------KSTIITTNYSL 144 (180)
T ss_dssp HHHHHHHHHHHHTT----------CEEEEECCCCS
T ss_pred HHHHHHHHHHHHcC----------CCEEEEcCCCh
Confidence 99999999987766 48999999764
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-14 Score=144.60 Aligned_cols=73 Identities=27% Similarity=0.438 Sum_probs=62.7
Q ss_pred CCCCCCChHHHHHH------HHHHHHhcCCCCCCCC-CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCce
Q 016804 222 RLPSELSGGMKKRV------ALARSIIFDNTKESVE-PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIA 294 (382)
Q Consensus 222 ~~~~~LSGGqrQRV------aIArAL~~~~~~~a~~-P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~ 294 (382)
+++..||||||||+ ++||+|+. + |++|||||||++||+..+..+.+.|.++.+. .
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~-------~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~-----------~ 337 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIG-------NRVECIILDEPTVYLDENRRAKLAEIFRKVKSI-----------P 337 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHS-------SCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSC-----------S
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhc-------CCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccC-----------C
Confidence 45679999999988 56788885 7 9999999999999999999999999987432 3
Q ss_pred EEEEEccCHHHHHHhhchh
Q 016804 295 SYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 295 tiIivTHdl~~~~~~aDrv 313 (382)
+||++||+.+ +..+||++
T Consensus 338 ~vi~~th~~~-~~~~~d~~ 355 (371)
T 3auy_A 338 QMIIITHHRE-LEDVADVI 355 (371)
T ss_dssp EEEEEESCGG-GGGGCSEE
T ss_pred eEEEEEChHH-HHhhCCEE
Confidence 8999999986 56788877
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=3.6e-18 Score=167.10 Aligned_cols=179 Identities=16% Similarity=0.241 Sum_probs=120.8
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCC-------cEEEEEcCCCccHHHHHHHHHcCC----CCCccEEEECCEECCCCCC
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHG-------EAVGIIGPSGTGKSTILKIIAGLL----APDKGEVYIRGRKRAGLIS 160 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~G-------e~vaLiGpNGaGKSTLLklI~Gl~----~p~sG~I~i~G~~i~~~~~ 160 (382)
++.+++++.||...+++++++.+.+| +.++|+||||+|||||+++|+|.+ .+++|.+..++.++...
T Consensus 19 lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~-- 96 (334)
T 1in4_A 19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAI-- 96 (334)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHH--
T ss_pred cCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHH--
Confidence 45667777888888999999999887 899999999999999999999998 77888877766543210
Q ss_pred hhhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCC----HHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHH
Q 016804 161 DEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMR----DEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVA 236 (382)
Q Consensus 161 ~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~----~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVa 236 (382)
.....+..|.|++|...+++ ++.|++...+... ... .....+.+...++.+++.. ..+.+..||+|+|||+.
T Consensus 97 ~~~~~~~~v~~iDE~~~l~~--~~~e~L~~~~~~~-~~~i~~~~~~~~~~i~~~l~~~~li~-at~~~~~Ls~~l~sR~~ 172 (334)
T 1in4_A 97 LTSLERGDVLFIDEIHRLNK--AVEELLYSAIEDF-QIDIMIGKGPSAKSIRIDIQPFTLVG-ATTRSGLLSSPLRSRFG 172 (334)
T ss_dssp HHHCCTTCEEEEETGGGCCH--HHHHHHHHHHHTS-CCCC---------------CCCEEEE-EESCGGGSCHHHHTTCS
T ss_pred HHHccCCCEEEEcchhhcCH--HHHHHHHHHHHhc-ccceeeccCcccccccccCCCeEEEE-ecCCcccCCHHHHHhcC
Confidence 00112335999999887775 7888885433221 111 1122334555566677755 67788999999999974
Q ss_pred HHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 237 IArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
++ .+||+....++.++|++..+..+ ++|+.+.+..++++.
T Consensus 173 l~-----------------------~~Ld~~~~~~l~~iL~~~~~~~~--------------~~~~~~~~~~ia~~~ 212 (334)
T 1in4_A 173 II-----------------------LELDFYTVKELKEIIKRAASLMD--------------VEIEDAAAEMIAKRS 212 (334)
T ss_dssp EE-----------------------EECCCCCHHHHHHHHHHHHHHTT--------------CCBCHHHHHHHHHTS
T ss_pred ce-----------------------eeCCCCCHHHHHHHHHHHHHHcC--------------CCcCHHHHHHHHHhc
Confidence 32 45667778888999988876421 257777666666653
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.50 E-value=2e-17 Score=171.72 Aligned_cols=175 Identities=15% Similarity=0.201 Sum_probs=110.3
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCC
Q 016804 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLT 183 (382)
Q Consensus 104 ~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lT 183 (382)
..+++++++.+++|+.++|+|||||||||||++|+|+++|++|.|+++|.+-.... ....++++.|........|
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~-----~~~~v~~~~r~~~~~~~~~ 321 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLY-----HENWIAEVTRTGMGEGEID 321 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCC-----CSSEEEEECBCCSSSCCBC
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCC-----CCCeEEEEeecccccCCcC
Confidence 35789999999999999999999999999999999999999999999986421111 1124666666543222234
Q ss_pred HHHHHHhhHhhcC------CCCHHHHHHH------------------HHHHHHHcC-----Ccc----ccc---CCCCCC
Q 016804 184 VRENVGFLLYENS------KMRDEQISEL------------------VKENLAAVG-----LKG----VED---RLPSEL 227 (382)
Q Consensus 184 V~eni~~~~~~~~------~~~~~~~~~~------------------v~~~L~~~g-----L~~----~~~---~~~~~L 227 (382)
..+++...++... .....+.... +.++++++. +.. ..+ .....+
T Consensus 322 ~~~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~ 401 (511)
T 2oap_1 322 MYDLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWV 401 (511)
T ss_dssp HHHHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEE
T ss_pred HHHHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEE
Confidence 4444433322110 0111111110 122233322 211 111 223457
Q ss_pred ChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEE--EccCHHH
Q 016804 228 SGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVV--VTHQHST 305 (382)
Q Consensus 228 SGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIi--vTHdl~~ 305 (382)
|+||+||+++| ++ | |+|||+.....+.+.|.++.+++ .|+++ +||++++
T Consensus 402 s~G~~~R~~~a-----------------i~-E-~~GlDp~~~~~~~~~l~~~~~~~----------~tii~~~~sH~l~e 452 (511)
T 2oap_1 402 RGNTRLRRTKE-----------------VN-E-ILGIDPVDKNLLVNQFVKWDPKE----------DKHIEVSMPKKLEK 452 (511)
T ss_dssp SSSCEEEEEEE-----------------EE-E-EEECCSSSSCCEEEEEEEEETTT----------TEEEECSCCTHHHH
T ss_pred eCCCceEEEEE-----------------EE-E-EcCcccCCCeEEEEEeEEEcccC----------CEEEEcccHHHHHH
Confidence 99998886542 11 6 99999988877777777775554 37775 9999999
Q ss_pred HHHhhch
Q 016804 306 IRRAVDR 312 (382)
Q Consensus 306 ~~~~aDr 312 (382)
+.+.|+.
T Consensus 453 i~~~~g~ 459 (511)
T 2oap_1 453 MADFLGV 459 (511)
T ss_dssp HHHHHTS
T ss_pred HHHHcCC
Confidence 9988763
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-14 Score=141.24 Aligned_cols=138 Identities=18% Similarity=0.194 Sum_probs=77.8
Q ss_pred EEEEEcCCCccHHHHHHHHHc-CCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAG-LLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSK 197 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~G-l~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~ 197 (382)
.+.|.||||+|||||+++|+| ++.|+.|.+.++|.+.... . ..+..+++++|...+.-..+ +. ..
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~--~~--------~~ 103 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTA---S-NRKLELNVVSSPYHLEITPS--DM--------GN 103 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC----------------------CCEECSSEEEECCC--------------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccc---c-cccceeeeecccceEEecHh--hc--------CC
Confidence 389999999999999999999 8999999999999765321 1 11335889998765421111 00 00
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 016804 198 MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIR 277 (382)
Q Consensus 198 ~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~ 277 (382)
......++.+.++.+..++..+. +||| +.. +|+++|+|||++ ||+.++..+.+.|.
T Consensus 104 ~~~~~~~~~i~~~~~~~~~~~~~-----~ls~-----------l~~-------~~~vlilDE~~~-L~~~~~~~L~~~le 159 (354)
T 1sxj_E 104 NDRIVIQELLKEVAQMEQVDFQD-----SKDG-----------LAH-------RYKCVIINEANS-LTKDAQAALRRTME 159 (354)
T ss_dssp CCHHHHHHHHHHHTTTTC-----------------------------------CCEEEEEECTTS-SCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhccccccc-----cccc-----------cCC-------CCeEEEEeCccc-cCHHHHHHHHHHHH
Confidence 11112333333333333333222 5676 554 699999999999 99999999999988
Q ss_pred HHHHcCCCCCCCCCCceEEEEEccCHHH
Q 016804 278 SVHKKGENGLANPGNIASYVVVTHQHST 305 (382)
Q Consensus 278 ~l~~~g~~~~~~~~~~~tiIivTHdl~~ 305 (382)
+... + .++|++||+.+.
T Consensus 160 ~~~~-~----------~~~Il~t~~~~~ 176 (354)
T 1sxj_E 160 KYSK-N----------IRLIMVCDSMSP 176 (354)
T ss_dssp HSTT-T----------EEEEEEESCSCS
T ss_pred hhcC-C----------CEEEEEeCCHHH
Confidence 7643 2 589999998753
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=4.7e-15 Score=150.31 Aligned_cols=168 Identities=17% Similarity=0.184 Sum_probs=99.2
Q ss_pred eEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHH
Q 016804 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRE 186 (382)
Q Consensus 107 L~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~e 186 (382)
-++++|+++.|+.++|+|+|||||||||++|+|..+ .+.+.+...+ ...+|+|+++.. ..+++.|
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftTl-------~p~~G~V~~~~~--~~~~l~D 211 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTTL-------SPNLGVVEVSEE--ERFTLAD 211 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCSS-------CCEEEEEECSSS--CEEEEEE
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCccccee-------cceeeEEEecCc--ceEEEEe
Confidence 479999999999999999999999999999999843 2333322211 113555555420 0011111
Q ss_pred HHHhh--HhhcCCCCHHHHH--HHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCC
Q 016804 187 NVGFL--LYENSKMRDEQIS--ELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA 262 (382)
Q Consensus 187 ni~~~--~~~~~~~~~~~~~--~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPta 262 (382)
+..+. ......+.....+ +++..++..+++. ++++.+||+||+||+++|++|+. +|.+|++ +
T Consensus 212 tpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls---~~~~~~ls~g~~el~~la~aL~~-------~P~ILVl----N 277 (416)
T 1udx_A 212 IPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA---DEPLKTLETLRKEVGAYDPALLR-------RPSLVAL----N 277 (416)
T ss_dssp CCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT---SCHHHHHHHHHHHHHHHCHHHHH-------SCEEEEE----E
T ss_pred ccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc---cCCHHHHHHHHHHHHHHhHHhhc-------CCEEEEE----E
Confidence 11100 0001111111100 1112223333443 45677899999999999999987 5999999 9
Q ss_pred CCCHHHHHHHHHHHHH-HHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 263 GLDPIASTVVEDLIRS-VHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 263 gLD~~~~~~l~~lL~~-l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
.+|+... ...+.+.+ +.+.+. ..+.+++|.-+-+..+.+.+
T Consensus 278 KlDl~~~-~~~~~l~~~l~~~g~---------~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 278 KVDLLEE-EAVKALADALAREGL---------AVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp CCTTSCH-HHHHHHHHHHHTTTS---------CEEECCTTTCTTHHHHHHHH
T ss_pred CCChhhH-HHHHHHHHHHHhcCC---------eEEEEECCCccCHHHHHHHH
Confidence 9999876 44444444 433341 23455556666566666655
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.48 E-value=7.7e-16 Score=148.92 Aligned_cols=127 Identities=16% Similarity=0.141 Sum_probs=87.8
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhH--
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLL-- 192 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~-- 192 (382)
.++.++||+||+|||||||.+.|++++.+. | . . ...+.+|+|+..+++. ++++|+.+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~---------~--~~~~~iv~~D~f~~~~-~~~~~l~~~~~~ 89 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G---------G--EKSIGYASIDDFYLTH-EDQLKLNEQFKN 89 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G---------G--GSCEEEEEGGGGBCCH-HHHHHHHHHTTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C---------C--CceEEEeccccccCCh-HHHHHHhccccc
Confidence 468899999999999999999999999764 2 0 0 1135666999998874 8999998752
Q ss_pred ---hhcCCCCHHHHHHHHHHHHHHcCCc--------ccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCC
Q 016804 193 ---YENSKMRDEQISELVKENLAAVGLK--------GVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPT 261 (382)
Q Consensus 193 ---~~~~~~~~~~~~~~v~~~L~~~gL~--------~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPt 261 (382)
....+.......+.+.+.++.+.-. -....+...+||||+||+++|++... +|+|||+||||
T Consensus 90 ~~l~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~-------~~~IlIlEG~~ 162 (290)
T 1odf_A 90 NKLLQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL-------PVDIFILEGWF 162 (290)
T ss_dssp CGGGSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES-------SCSEEEEEESS
T ss_pred cchhhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc-------CCCEEEEeCcc
Confidence 1111111111122344555555332 12345567899999999999844432 39999999999
Q ss_pred CCCCHH
Q 016804 262 AGLDPI 267 (382)
Q Consensus 262 agLD~~ 267 (382)
+++|+.
T Consensus 163 ~~ld~~ 168 (290)
T 1odf_A 163 LGFNPI 168 (290)
T ss_dssp TTCCCC
T ss_pred ccCCcc
Confidence 999985
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.2e-14 Score=125.35 Aligned_cols=103 Identities=20% Similarity=0.313 Sum_probs=75.3
Q ss_pred eeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc--EEEECCEECCCCCChhhhccceEEEEecCCCCCCCCC
Q 016804 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG--EVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLT 183 (382)
Q Consensus 106 iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG--~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lT 183 (382)
+|+++ +|+.++|+||||||||||+++|++...+ +| .+++++.++ ...
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~-----------------------~~~-- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASM-----------------------PLT-- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTS-----------------------CCC--
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHh-----------------------hHH--
Confidence 45555 8999999999999999999999999876 46 444433211 000
Q ss_pred HHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCC
Q 016804 184 VRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAG 263 (382)
Q Consensus 184 V~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtag 263 (382)
+++. +|++|++|||++
T Consensus 79 --------------------------------------------------------~~~~-------~~~lLilDE~~~- 94 (149)
T 2kjq_A 79 --------------------------------------------------------DAAF-------EAEYLAVDQVEK- 94 (149)
T ss_dssp --------------------------------------------------------GGGG-------GCSEEEEESTTC-
T ss_pred --------------------------------------------------------HHHh-------CCCEEEEeCccc-
Confidence 2243 599999999998
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCCCCCCCceE-EEEEccC-HHHH---HHhhchh
Q 016804 264 LDPIASTVVEDLIRSVHKKGENGLANPGNIAS-YVVVTHQ-HSTI---RRAVDRL 313 (382)
Q Consensus 264 LD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~t-iIivTHd-l~~~---~~~aDrv 313 (382)
+|...+..+++++.++.++| .+ +|++||. .+++ .++++|+
T Consensus 95 ~~~~~~~~l~~li~~~~~~g----------~~~iiits~~~p~~l~~~~~L~SRl 139 (149)
T 2kjq_A 95 LGNEEQALLFSIFNRFRNSG----------KGFLLLGSEYTPQQLVIREDLRTRM 139 (149)
T ss_dssp CCSHHHHHHHHHHHHHHHHT----------CCEEEEEESSCTTTSSCCHHHHHHG
T ss_pred cChHHHHHHHHHHHHHHHcC----------CcEEEEECCCCHHHccccHHHHHHH
Confidence 66666899999999998876 36 8888884 3323 5666666
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-16 Score=155.17 Aligned_cols=93 Identities=23% Similarity=0.351 Sum_probs=79.0
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEE-------------------eCCcEEEEEcCCCccHHHHHHHHHcCCC--CCccEEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKI-------------------RHGEAVGIIGPSGTGKSTILKIIAGLLA--PDKGEVY 149 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i-------------------~~Ge~vaLiGpNGaGKSTLLklI~Gl~~--p~sG~I~ 149 (382)
+|+++||++.| .++++++||.+ .+|+++||+||||||||||+++|+|++. |++|+|.
T Consensus 37 ~i~~~~v~~~y--~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~ 114 (308)
T 1sq5_A 37 DLSLEEVAEIY--LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVE 114 (308)
T ss_dssp TCCHHHHHHTH--HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEE
T ss_pred ccchHhHHHHH--HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEE
Confidence 58899999999 47899999988 8999999999999999999999999998 9999999
Q ss_pred E---CCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhH
Q 016804 150 I---RGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLL 192 (382)
Q Consensus 150 i---~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~ 192 (382)
+ +|... ..... ..+|++ |+..+++.+|+.+|+.+..
T Consensus 115 vi~~d~~~~----~~~~~--~~~~~v-q~~~~~~~~~~~~~~~~~~ 153 (308)
T 1sq5_A 115 LITTDGFLH----PNQVL--KERGLM-KKKGFPESYDMHRLVKFVS 153 (308)
T ss_dssp EEEGGGGBC----CHHHH--HHHTCT-TCTTSGGGBCHHHHHHHHH
T ss_pred EEecCCccC----cHHHH--HhCCEe-ecCCCCCCccHHHHHHHHH
Confidence 9 88653 12221 247888 8888888899999998754
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.5e-14 Score=145.96 Aligned_cols=132 Identities=17% Similarity=0.200 Sum_probs=79.7
Q ss_pred EEeCCcEEEEEcCCCccHHHHHH--HHHcCCCCCcc-----EEEECCEECCCCCChhhhc--cceEEEEecCCCCCCCCC
Q 016804 113 KIRHGEAVGIIGPSGTGKSTILK--IIAGLLAPDKG-----EVYIRGRKRAGLISDEEIS--GLRIGLVFQSAALFDSLT 183 (382)
Q Consensus 113 ~i~~Ge~vaLiGpNGaGKSTLLk--lI~Gl~~p~sG-----~I~i~G~~i~~~~~~~~~~--~~~Ig~V~Q~~~l~~~lT 183 (382)
-|++|++++|+||||||||||++ ++.++.+++.| .++|++++.. ...... ..++|+.+| +
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~---~~~rl~~~a~~~gl~~~--------~ 242 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTF---RPVRLVSIAQRFGLDPD--------D 242 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCC---CHHHHHHHHHHTTCCHH--------H
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCcc---CHHHHHHHHHHcCCChH--------h
Confidence 58999999999999999999999 45677777555 7777775421 111100 012333222 3
Q ss_pred HHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCCh-HHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCC
Q 016804 184 VRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSG-GMKKRVALARSIIFDNTKESVEPEVLLYDEPTA 262 (382)
Q Consensus 184 V~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSG-GqrQRVaIArAL~~~~~~~a~~P~iLLLDEPta 262 (382)
+.+|+.+.. ..+. .+.+.+.-++.++.. .+|+++++|||++
T Consensus 243 vleni~~~~---------------------------------~~~~~~~~~~l~~~~~~l~~-----~~~~llVIDs~t~ 284 (400)
T 3lda_A 243 ALNNVAYAR---------------------------------AYNADHQLRLLDAAAQMMSE-----SRFSLIVVDSVMA 284 (400)
T ss_dssp HHHTEEEEE---------------------------------CCSHHHHHHHHHHHHHHHHH-----SCEEEEEEETGGG
T ss_pred HhhcEEEec---------------------------------cCChHHHHHHHHHHHHHHHh-----cCCceEEecchhh
Confidence 333332210 0111 122333333344331 3699999999999
Q ss_pred CCCHHHH------------HHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCH
Q 016804 263 GLDPIAS------------TVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQH 303 (382)
Q Consensus 263 gLD~~~~------------~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl 303 (382)
.+|+... .++++.|++++++ + +|||+|+|..
T Consensus 285 ~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~g----------itVIlv~Hv~ 328 (400)
T 3lda_A 285 LYRTDFSGRGELSARQMHLAKFMRALQRLADQFG----------VAVVVTNQVV 328 (400)
T ss_dssp GCC------CCHHHHHHHHHHHHHHHHHHHHHHC----------CEEEEEEEC-
T ss_pred hCchhhcCccchHHHHHHHHHHHHHHHHHHHHcC----------CEEEEEEeec
Confidence 9997543 5677888888766 4 6999999984
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=6.2e-18 Score=161.80 Aligned_cols=148 Identities=18% Similarity=0.228 Sum_probs=104.7
Q ss_pred eCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCC-CCC
Q 016804 101 FGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSA-ALF 179 (382)
Q Consensus 101 yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~-~l~ 179 (382)
|+...+++++++++++| ++|+||||||||||+|+|+|...+ |.|.++|.++....... ...+++++||.. ..+
T Consensus 30 ~~~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~--~~~~i~~vf~~a~~~~ 103 (274)
T 2x8a_A 30 VRNPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGE--SERAVRQVFQRAKNSA 103 (274)
T ss_dssp HHSHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHH--HHHHHHHHHHHHHHTC
T ss_pred hhCHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhH--HHHHHHHHHHHHHhcC
Confidence 34456899999999999 999999999999999999999887 79999997764322121 122478899985 556
Q ss_pred CCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeC
Q 016804 180 DSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDE 259 (382)
Q Consensus 180 ~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDE 259 (382)
+.+++.|++.+..... ... ... .+....++++.+|||||+||+.|++|+.+ +|++| ||
T Consensus 104 p~i~~~Deid~~~~~r---~~~----~~~------~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn-------~p~~L--D~ 161 (274)
T 2x8a_A 104 PCVIFFDEVDALCPRR---SDR----ETG------ASVRVVNQLLTEMDGLEARQQVFIMAATN-------RPDII--DP 161 (274)
T ss_dssp SEEEEEETCTTTCC----------------------CTTHHHHHHHHHHTCCSTTCEEEEEEES-------CGGGS--CH
T ss_pred CCeEeeehhhhhhccc---CCC----cch------HHHHHHHHHHHhhhcccccCCEEEEeecC-------ChhhC--CH
Confidence 6677788876532110 000 000 13345567788999999999999999986 58875 99
Q ss_pred CCC------------CCCHHHHHHHHHHH
Q 016804 260 PTA------------GLDPIASTVVEDLI 276 (382)
Q Consensus 260 Pta------------gLD~~~~~~l~~lL 276 (382)
|+. --|...+.++++.+
T Consensus 162 al~r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 162 AILRPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp HHHSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred hhcCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 864 23666666555543
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.44 E-value=3e-15 Score=146.21 Aligned_cols=119 Identities=23% Similarity=0.252 Sum_probs=70.5
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEE---CCEECCCCCChhhhccceEEEEecCCCCCC----CCCH
Q 016804 112 FKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI---RGRKRAGLISDEEISGLRIGLVFQSAALFD----SLTV 184 (382)
Q Consensus 112 l~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i---~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~----~lTV 184 (382)
+++.+|++++|+||||||||||+|+|+|+.+|++|+|.+ +|+...... ...+..+||++|.|.+.+ .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~---~~~~~~~g~v~dtpg~~~~~l~~lt~ 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV---ELIHTSGGLVADTPGFSSLEFTDIEE 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC---CEEEETTEEEESSCSCSSCCCTTCCH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH---HHhhcCCEEEecCCCccccccccCCH
Confidence 567789999999999999999999999999999999999 887754321 111112699999997754 6789
Q ss_pred HHHHH--hhH-hhc------CC-CCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHH
Q 016804 185 RENVG--FLL-YEN------SK-MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKR 234 (382)
Q Consensus 185 ~eni~--~~~-~~~------~~-~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQR 234 (382)
||+. |+- ... .+ ....+....+.++++.++|.+...+....|+.|++||
T Consensus 245 -e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~~lls~~~~~ 303 (307)
T 1t9h_A 245 -EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKDR 303 (307)
T ss_dssp -HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHhhc
Confidence 9983 331 101 11 1222234568889999999875555555667778773
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.42 E-value=8.7e-16 Score=139.89 Aligned_cols=139 Identities=20% Similarity=0.195 Sum_probs=78.2
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhHh
Q 016804 114 IRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLY 193 (382)
Q Consensus 114 i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~ 193 (382)
.++|++++|+||||||||||+++|+|+++|+ | ..+|+|+++...++. +..+|+.....
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g--------------------~~~g~v~~d~~~~~~-~~~~~~~~~~~ 76 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G--------------------LPAEVVPMDGFHLDN-RLLEPRGLLPR 76 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T--------------------CCEEEEESGGGBCCH-HHHGGGTCGGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C--------------------CceEEEecCCCcCCH-HHHHHhccccc
Confidence 4789999999999999999999999999875 3 024555555443331 22222211000
Q ss_pred -hc-CCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHH-HHHhcCCCCCCCCCcEEEEeCCC---------
Q 016804 194 -EN-SKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALA-RSIIFDNTKESVEPEVLLYDEPT--------- 261 (382)
Q Consensus 194 -~~-~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIA-rAL~~~~~~~a~~P~iLLLDEPt--------- 261 (382)
.. .........+.+..+-..-.+.-........+|+||+||+++| ++++. ++.++++|||.
T Consensus 77 ~~~~~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~-------eg~~~l~de~~~~~l~~~~d 149 (208)
T 3c8u_A 77 KGAPETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAII-------EGNYLLFDAPGWRDLTAIWD 149 (208)
T ss_dssp TTSGGGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEE-------EESSTTBCSTTGGGGGGTCS
T ss_pred CCCCchhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEE-------CCceeccCCchhHHHHHhcC
Confidence 00 0011122222222211110111111223345799999999998 88876 58888899984
Q ss_pred --CCCCHHHHHHHHHHHHHHHH
Q 016804 262 --AGLDPIASTVVEDLIRSVHK 281 (382)
Q Consensus 262 --agLD~~~~~~l~~lL~~l~~ 281 (382)
.-+|......+.+.+++..+
T Consensus 150 ~~i~vd~~~~~~~~R~~~R~~~ 171 (208)
T 3c8u_A 150 VSIRLEVPMADLEARLVQRWLD 171 (208)
T ss_dssp EEEEECCCHHHHHHHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHHh
Confidence 22455555555555555433
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=8.8e-17 Score=146.08 Aligned_cols=161 Identities=17% Similarity=0.173 Sum_probs=88.8
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCC-------------CCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCC
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAGLLA-------------PDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDS 181 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~Gl~~-------------p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~ 181 (382)
++|++++|+||||||||||+++|+|+++ |..|+ ++|.+.... ......+ .+.|+..++.
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~-~~~~~~~----~i~~~~~l~~- 73 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFV-TREMMQR----DIAAGDFIEH- 73 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEEC-CHHHHHH----HHHHTCEEEE-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEc-cHHHHHH----HHHcCCCEee-
Confidence 5799999999999999999999999986 66776 356543221 1111111 1245554443
Q ss_pred CCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHH---HHHH-HHhcCCCCCCCCCcEEEE
Q 016804 182 LTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRV---ALAR-SIIFDNTKESVEPEVLLY 257 (382)
Q Consensus 182 lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRV---aIAr-AL~~~~~~~a~~P~iLLL 257 (382)
.++.+|+ ++ .+.++ +.++++..... ..+..+ .|-++.. ..|| +++. +|++++|
T Consensus 74 ~~~~~n~-~g------~~~~~----i~~~~~~~~~~-~~~~~~----~g~~~~~~~~~~~~~~~l~-------~p~~~il 130 (198)
T 1lvg_A 74 AEFSGNL-YG------TSKEA----VRAVQAMNRIC-VLDVDL----QGVRSIKKTDLCPIYIFVQ-------PPSLDVL 130 (198)
T ss_dssp EEETTEE-EE------EEHHH----HHHHHHTTCEE-EEECCH----HHHHHHTTSSCCCEEEEEE-------CSCHHHH
T ss_pred eeecCcc-CC------CCHHH----HHHHHHcCCcE-EEECCH----HHHHHHHhcCCCcEEEEEe-------CCCHHHH
Confidence 3455554 22 12222 33444431111 111100 1111111 1456 5665 5888899
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCCCCC-CCCCceEEEEEccCHHHHHHh
Q 016804 258 DEPTAGLDPIASTVVEDLIRSVHKKGENGLA-NPGNIASYVVVTHQHSTIRRA 309 (382)
Q Consensus 258 DEPtagLD~~~~~~l~~lL~~l~~~g~~~~~-~~~~~~tiIivTHdl~~~~~~ 309 (382)
||+|+++|..+.+.+.+.|.++.++-. .+ .+ ...-.|++-++++.+..-
T Consensus 131 de~~~~~d~~~e~~i~~~l~~~~~~~~--~a~~~-~~~D~iivnd~le~a~~~ 180 (198)
T 1lvg_A 131 EQRLRLRNTETEESLAKRLAAARTDME--SSKEP-GLFDLVIINDDLDKAYAT 180 (198)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHTT--GGGST-TTCSEEEECSSHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHH--Hhhcc-CCceEEEECCCHHHHHHH
Confidence 999999999999999988887754310 00 00 002457777787766544
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.37 E-value=2.8e-16 Score=158.26 Aligned_cols=158 Identities=15% Similarity=0.204 Sum_probs=107.1
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHc------------CCCCCccEEEECCEECCCCCChhhhccceE---EEEecCCC
Q 016804 113 KIRHGEAVGIIGPSGTGKSTILKIIAG------------LLAPDKGEVYIRGRKRAGLISDEEISGLRI---GLVFQSAA 177 (382)
Q Consensus 113 ~i~~Ge~vaLiGpNGaGKSTLLklI~G------------l~~p~sG~I~i~G~~i~~~~~~~~~~~~~I---g~V~Q~~~ 177 (382)
++++|+.++|+|+||||||||+|+|+| ...|++|.|.+.|..+..+ ......++.+ .++.+.+.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l-~~~~~~~~~v~~~i~lvD~pG 94 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWL-CEAYKPKSRVPAFLTVFDIAG 94 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHH-HHHHCCSEEECEEEEEECTGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhh-hhhcccccccCcceEEEeccc
Confidence 467899999999999999999999999 6779999999988432110 0000011123 47788888
Q ss_pred CCCCCCHHHHH--HhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCC--c
Q 016804 178 LFDSLTVRENV--GFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEP--E 253 (382)
Q Consensus 178 l~~~lTV~eni--~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P--~ 253 (382)
+++..+..+++ .|.... +.. ..++..+++. .+.....+||+. +| +
T Consensus 95 l~~~~s~~e~L~~~fl~~i-r~~---------d~il~Vvd~~--~d~~i~~v~~~~-------------------dP~~d 143 (392)
T 1ni3_A 95 LTKGASTGVGLGNAFLSHV-RAV---------DAIYQVVRAF--DDAEIIHVEGDV-------------------DPIRD 143 (392)
T ss_dssp GCCCCCSSSSSCHHHHHHH-TTC---------SEEEEEEECC--CTTCSSCCSSSS-------------------CHHHH
T ss_pred cccCCcHHHHHHHHHHHHH-HHH---------HHHHHHHhcc--ccceeeeecccc-------------------Ccchh
Confidence 88877766655 221111 100 0111122222 133444456542 48 9
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHH-HHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhc
Q 016804 254 VLLYDEPTAGLDPIASTVVEDLIRSV-HKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLC 314 (382)
Q Consensus 254 iLLLDEPtagLD~~~~~~l~~lL~~l-~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~ 314 (382)
++++|||+.++|+......++.+..+ .+.| .|++ +|++..+..+||++.
T Consensus 144 i~ildeel~~~D~~~~~k~~~~l~~~~~~~g----------~ti~--sh~~~~~~~l~~~i~ 193 (392)
T 1ni3_A 144 LSIIVDELLIKDAEFVEKHLEGLRKITSRGA----------NTLE--MKAKKEEQAIIEKVY 193 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCSS----------CSSS--HHHHHHHHHHHHHHH
T ss_pred hhhchhhhHHHHHHHHHHHHHHHHHHHHhcC----------Cccc--cccHHHHHHHHHHHH
Confidence 99999999999999999999998887 5544 3543 999999999999994
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.3e-12 Score=126.41 Aligned_cols=133 Identities=14% Similarity=0.086 Sum_probs=95.4
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
+.++++++.|+... ++++|+ +|++++++|+||+||||+++.|++++.+..|+|.+.+.|... ...
T Consensus 77 ~~~~~l~~~~~~~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~---~~~-------- 141 (295)
T 1ls1_A 77 TVYEALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR---PAA-------- 141 (295)
T ss_dssp HHHHHHHHHTTSSC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC---HHH--------
T ss_pred HHHHHHHHHHCCCC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCccc---HhH--------
Confidence 45678888887543 788998 999999999999999999999999999999999998866421 100
Q ss_pred EecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCC
Q 016804 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~ 251 (382)
. +.+ ..+.+..++.-..... ..+-.+.+|.+|+++... +
T Consensus 142 ~-------------~ql-------------------~~~~~~~~l~~~~~~~--~~~p~~l~~~~l~~~~~~-------~ 180 (295)
T 1ls1_A 142 R-------------EQL-------------------RLLGEKVGVPVLEVMD--GESPESIRRRVEEKARLE-------A 180 (295)
T ss_dssp H-------------HHH-------------------HHHHHHHTCCEEECCT--TCCHHHHHHHHHHHHHHH-------T
T ss_pred H-------------HHH-------------------HHhcccCCeEEEEcCC--CCCHHHHHHHHHHHHHhC-------C
Confidence 0 000 0012233443321110 123445678999998765 5
Q ss_pred CcEEEEeCC-CCCCCHHHHHHHHHHHHHHH
Q 016804 252 PEVLLYDEP-TAGLDPIASTVVEDLIRSVH 280 (382)
Q Consensus 252 P~iLLLDEP-tagLD~~~~~~l~~lL~~l~ 280 (382)
++++|+||| +.++|.....++.++.+.+.
T Consensus 181 ~D~viiDtpp~~~~d~~~~~~l~~~~~~~~ 210 (295)
T 1ls1_A 181 RDLILVDTAGRLQIDEPLMGELARLKEVLG 210 (295)
T ss_dssp CCEEEEECCCCSSCCHHHHHHHHHHHHHHC
T ss_pred CCEEEEeCCCCccccHHHHHHHHHHhhhcC
Confidence 999999999 99999988888888777663
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=99.26 E-value=3.1e-12 Score=124.69 Aligned_cols=114 Identities=19% Similarity=0.191 Sum_probs=83.3
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHH
Q 016804 109 GVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENV 188 (382)
Q Consensus 109 ~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni 188 (382)
.++++.++|++++|+|||||||||+++.|++++.++.|+|.+.+.|... .+ ..+
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r-----------~~-------------a~e-- 149 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR-----------AA-------------AIE-- 149 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC-----------HH-------------HHH--
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc-----------HH-------------HHH--
Confidence 3566678999999999999999999999999999988899988765310 00 011
Q ss_pred HhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHH---HHHHHHhcCCCCCCCCCcEEEEeCCCCCCC
Q 016804 189 GFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRV---ALARSIIFDNTKESVEPEVLLYDEPTAGLD 265 (382)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRV---aIArAL~~~~~~~a~~P~iLLLDEPtagLD 265 (382)
.+..+++.+++.. ...+|+|+.|++ +|++|+.. +|+++|+|||..
T Consensus 150 -----------------qL~~~~~~~gl~~-----~~~~s~~~~~~v~~~al~~a~~~-------~~dvvIiDtpg~--- 197 (306)
T 1vma_A 150 -----------------QLKIWGERVGATV-----ISHSEGADPAAVAFDAVAHALAR-------NKDVVIIDTAGR--- 197 (306)
T ss_dssp -----------------HHHHHHHHHTCEE-----ECCSTTCCHHHHHHHHHHHHHHT-------TCSEEEEEECCC---
T ss_pred -----------------HHHHHHHHcCCcE-----EecCCccCHHHHHHHHHHHHHhc-------CCCEEEEECCCc---
Confidence 1233455666653 235789999999 99999986 699999999974
Q ss_pred HHHHHHHHHHHHHHH
Q 016804 266 PIASTVVEDLIRSVH 280 (382)
Q Consensus 266 ~~~~~~l~~lL~~l~ 280 (382)
......+++.|+++.
T Consensus 198 ~~~~~~l~~eL~~l~ 212 (306)
T 1vma_A 198 LHTKKNLMEELRKVH 212 (306)
T ss_dssp CSCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHH
Confidence 334455555555554
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=2.1e-12 Score=133.13 Aligned_cols=61 Identities=23% Similarity=0.267 Sum_probs=53.4
Q ss_pred EEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCC
Q 016804 94 CRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAG 157 (382)
Q Consensus 94 ~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~ 157 (382)
+.+++.. +..+|+++||+|++ |+++|+|||||||||||++|+|+++|++|+|.++|+++..
T Consensus 9 l~~l~~~--~~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ 69 (483)
T 3euj_A 9 FRSLTLI--NWNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAG 69 (483)
T ss_dssp EEEEEEE--EETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCS
T ss_pred eeEEEEe--ccccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEccc
Confidence 4445432 25689999999999 9999999999999999999999999999999999987653
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.7e-11 Score=118.74 Aligned_cols=132 Identities=17% Similarity=0.210 Sum_probs=86.7
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhHhh
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYE 194 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~ 194 (382)
.+|++++|+|||||||||+++.|++.+.+++| .+|.++.+++. ..++.+++...
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G--------------------~~V~lv~~D~~---r~~a~eqL~~~--- 156 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH--------------------KKIAFITTDTY---RIAAVEQLKTY--- 156 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC--------------------CCEEEEECCCS---STTHHHHHHHH---
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC--------------------CEEEEEecCcc---cchHHHHHHHH---
Confidence 47999999999999999999999999988777 13667777663 23555555432
Q ss_pred cCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHH
Q 016804 195 NSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVED 274 (382)
Q Consensus 195 ~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~ 274 (382)
.+..|+..... .+ +..-+.+|+++ . +|+++|+| |+|+|+.....+.+
T Consensus 157 ----------------~~~~gl~~~~~-----~~-~~~l~~al~~~--~-------~~dlvIiD--T~G~~~~~~~~~~e 203 (296)
T 2px0_A 157 ----------------AELLQAPLEVC-----YT-KEEFQQAKELF--S-------EYDHVFVD--TAGRNFKDPQYIDE 203 (296)
T ss_dssp ----------------HTTTTCCCCBC-----SS-HHHHHHHHHHG--G-------GSSEEEEE--CCCCCTTSHHHHHH
T ss_pred ----------------HHhcCCCeEec-----CC-HHHHHHHHHHh--c-------CCCEEEEe--CCCCChhhHHHHHH
Confidence 12233322111 12 23446666653 4 59999999 99999876655555
Q ss_pred HHHHHHHcCCCCCCCCCCceEEEEE--ccCHHHHHHhhchh
Q 016804 275 LIRSVHKKGENGLANPGNIASYVVV--THQHSTIRRAVDRL 313 (382)
Q Consensus 275 lL~~l~~~g~~~~~~~~~~~tiIiv--THdl~~~~~~aDrv 313 (382)
+.+-+.... +. .+++++ ||+.+.+.++++++
T Consensus 204 l~~~l~~~~------~~--~~~lVl~at~~~~~~~~~~~~~ 236 (296)
T 2px0_A 204 LKETIPFES------SI--QSFLVLSATAKYEDMKHIVKRF 236 (296)
T ss_dssp HHHHSCCCT------TE--EEEEEEETTBCHHHHHHHTTTT
T ss_pred HHHHHhhcC------CC--eEEEEEECCCCHHHHHHHHHHH
Confidence 443332100 01 234444 99999999999987
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.5e-13 Score=125.16 Aligned_cols=183 Identities=13% Similarity=0.070 Sum_probs=74.5
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHH-cCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCC
Q 016804 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIA-GLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSL 182 (382)
Q Consensus 104 ~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~-Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~l 182 (382)
.+..+++||++++|++++|+||||||||||+++|+ |++++. +++.+........ .....++|.|+++..|..+
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~-----~~~~~~~~~~~~~-g~~~g~~~~~~~~~~~~~~ 87 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNI-----VKSVSVTTRAARK-GEKEGKDYYFVDREEFLRL 87 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----CE-----EECCCEESSCCCT-TCCBTTTBEECCHHHHHHH
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCc-----ccccccCCCCCCc-cccCCCeEEEecHHHhhhh
Confidence 45789999999999999999999999999999999 998652 2222221111000 0001244677766555444
Q ss_pred CHHHHHHhhHhh---cCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCCh--HHHHHH-HHHH-HHhcCCCCCCCCCcEE
Q 016804 183 TVRENVGFLLYE---NSKMRDEQISELVKENLAAVGLKGVEDRLPSELSG--GMKKRV-ALAR-SIIFDNTKESVEPEVL 255 (382)
Q Consensus 183 TV~eni~~~~~~---~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSG--GqrQRV-aIAr-AL~~~~~~~a~~P~iL 255 (382)
+..+++...... ..+...+. +.++++.-. .-..+- .+.| ..++++ .-++ .++. .|+..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~----i~~~~~~~~-~vild~---~~~g~~~~~~~~~~~~~~v~v~-------~~~~~ 152 (231)
T 3lnc_A 88 CSNGEIIEHAEVFGNFYGVPRKN----LEDNVDKGV-STLLVI---DWQGAFKFMEMMREHVVSIFIM-------PPSME 152 (231)
T ss_dssp HHTTCEEEEEEETTEEEEEECTT----HHHHHHHTC-EEEEEC---CHHHHHHHHHHSGGGEEEEEEE-------CSCHH
T ss_pred hhcCceehhhhhccccCCCCHHH----HHHHHHcCC-eEEEEc---CHHHHHHHHHhcCCCeEEEEEE-------CCcHH
Confidence 443333211000 00111111 223333311 111111 0111 113332 1111 2232 36777
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 256 LYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 256 LLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+++|++.+.|..+...+.+.|.+...+ .+. ....+++++|+++++.+.++++
T Consensus 153 ~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~------~~~d~vI~n~~~e~~~~~l~~~ 205 (231)
T 3lnc_A 153 ELRRRLCGRRADDSEVVEARLKGAAFEISHC------EAYDYVIVNEDIEETADRISNI 205 (231)
T ss_dssp HHHHC--------------CHHHHHHHHTTG------GGSSEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHhhh------cCCeEEEECcCHHHHHHHHHHH
Confidence 788999999988887777766654322 100 0146889999999888777766
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.23 E-value=3.9e-16 Score=148.12 Aligned_cols=134 Identities=13% Similarity=0.188 Sum_probs=93.0
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
..+++++.+.|+...+++++++++++| ++|+||||||||||+++|++... .|.|.+++.++........ ..+++
T Consensus 49 ~~~l~~l~~~~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~--~~~i~ 122 (278)
T 1iy2_A 49 KEELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVG--AARVR 122 (278)
T ss_dssp HHHHHHHHHHHHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHH--HHHHH
T ss_pred HHHHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHH--HHHHH
Confidence 345677888887778999999999999 99999999999999999999985 7999998876432111111 12477
Q ss_pred EEecCCC-CCCCCCHHHHHHhhHhhcC-C--CCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhc
Q 016804 171 LVFQSAA-LFDSLTVRENVGFLLYENS-K--MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIF 243 (382)
Q Consensus 171 ~V~Q~~~-l~~~lTV~eni~~~~~~~~-~--~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~ 243 (382)
++||... .++.+++.|++........ . ...++..+.+.++ +.+|||||+||+.+++|+.+
T Consensus 123 ~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~l-------------l~~lsgg~~~~~~i~~a~t~ 186 (278)
T 1iy2_A 123 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQL-------------LVEMDGFEKDTAIVVMAATN 186 (278)
T ss_dssp HHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHH-------------HHHHTTCCTTCCEEEEEEES
T ss_pred HHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHH-------------HHHHhCCCCCCCEEEEEecC
Confidence 8898864 5667788888843221110 0 0112222222222 34589999999999999986
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=3.4e-16 Score=146.05 Aligned_cols=144 Identities=13% Similarity=0.214 Sum_probs=98.6
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
..+++++.+.|+...+++++++++++| +.|+||||||||||+++|++... .|.|.++|.++........ ..+++
T Consensus 25 ~~~l~~l~~~~~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~--~~~i~ 98 (254)
T 1ixz_A 25 KEELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVG--AARVR 98 (254)
T ss_dssp HHHHHHHHHHHHCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHH--HHHHH
T ss_pred HHHHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHH--HHHHH
Confidence 456778888887778999999999999 99999999999999999999885 7899998866432111111 12467
Q ss_pred EEecCCC-CCCCCCHHHHHHhhHhhcCC---CCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCC
Q 016804 171 LVFQSAA-LFDSLTVRENVGFLLYENSK---MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT 246 (382)
Q Consensus 171 ~V~Q~~~-l~~~lTV~eni~~~~~~~~~---~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~ 246 (382)
++||... .++.+++.|++......... ...++..+.+.++ ..+|||||+||+.+++|+.+
T Consensus 99 ~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~l-------------l~~l~g~~~~~~~i~~a~t~--- 162 (254)
T 1ixz_A 99 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQL-------------LVEMDGFEKDTAIVVMAATN--- 162 (254)
T ss_dssp HHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHH-------------HHHHHTCCTTCCEEEEEEES---
T ss_pred HHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHH-------------HHHHhCCCCCCCEEEEEccC---
Confidence 8888754 56667888888432211110 0112222233333 23578999999999999986
Q ss_pred CCCCCCcEEEEeCCCC
Q 016804 247 KESVEPEVLLYDEPTA 262 (382)
Q Consensus 247 ~~a~~P~iLLLDEPta 262 (382)
+|++ +|++.-
T Consensus 163 ----~p~~--ld~~l~ 172 (254)
T 1ixz_A 163 ----RPDI--LDPALL 172 (254)
T ss_dssp ----CGGG--SCGGGG
T ss_pred ----Cchh--CCHHHc
Confidence 4765 576653
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.21 E-value=4.4e-13 Score=120.05 Aligned_cols=74 Identities=18% Similarity=0.208 Sum_probs=54.3
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHh
Q 016804 111 SFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGF 190 (382)
Q Consensus 111 sl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~ 190 (382)
|+++.+|++++|+||||||||||+++|+|+++ .+.+.+.......... ....++|+||++.+|+.+++.+|+.+
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPG--DQEGVDYFFIDETRFQAMVKEGAFLE 74 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTT--CCBTTTBEECCHHHHHHHHHHTCEEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchh--HhcCceEEeccHHHHHHHHhcCcEEe
Confidence 67888999999999999999999999999974 5888887654322111 12358999999988877777766544
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=2.1e-13 Score=141.53 Aligned_cols=194 Identities=18% Similarity=0.143 Sum_probs=120.3
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHHc--CCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHH
Q 016804 109 GVSFKIRHGEAVGIIGPSGTGKSTILKIIAG--LLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRE 186 (382)
Q Consensus 109 ~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~G--l~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~e 186 (382)
.+++++.++..+.|.|++||||||+++.|.. ++.++.|++.+.+.|.... ...... .-|.++. +|.+
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~----el~~~~-----~lPhl~~--~Vvt 227 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKML----ELSVYE-----GIPHLLT--EVVT 227 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSS----GGGGGT-----TCTTBSS--SCBC
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchh----hhhhhc-----cCCcccc--eeec
Confidence 5778888999999999999999999999876 6677778888888775421 111000 0012211 1222
Q ss_pred HHHhhHhhcCCCCHHHHHHHHHHHHHHcCCccccc---CCCCCCChHHHHHH----------HHHHHHhcCCCCCCCCCc
Q 016804 187 NVGFLLYENSKMRDEQISELVKENLAAVGLKGVED---RLPSELSGGMKKRV----------ALARSIIFDNTKESVEPE 253 (382)
Q Consensus 187 ni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~---~~~~~LSGGqrQRV----------aIArAL~~~~~~~a~~P~ 253 (382)
|......... ....+++++. ++++.+|+.+... +....+|+||+||. ++|+++.. .|.
T Consensus 228 d~~~a~~~L~-~~~~EmerR~-~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~-------lP~ 298 (512)
T 2ius_A 228 DMKDAANALR-WCVNEMERRY-KLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKK-------EPY 298 (512)
T ss_dssp SHHHHHHHHH-HHHHHHHHHH-HHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCC-------CCE
T ss_pred CHHHHHHHHH-HHHHHHHHHH-HHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhcccccccc-------CCc
Confidence 2221111000 1234566664 6788888865432 23356899998763 34555543 587
Q ss_pred -EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHH-------HHHHhhchhccccccccchhe
Q 016804 254 -VLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS-------TIRRAVDRLCLFQIFGHIDVV 325 (382)
Q Consensus 254 -iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~-------~~~~~aDrv~~~~~~~~~~~~ 325 (382)
++++||+++-+|. ....+.+.|.++.+.|.. -+.++|++||+.+ ...++.+|| .|+..-..|.-
T Consensus 299 ivlvIDE~~~ll~~-~~~~~~~~l~~Lar~gRa------~GI~LIlaTQrp~~dvl~~~i~~n~~~RI-~lrv~s~~dsr 370 (512)
T 2ius_A 299 IVVLVDEFADLMMT-VGKKVEELIARLAQKARA------AGIHLVLATQRPSVDVITGLIKANIPTRI-AFTVSSKIDSR 370 (512)
T ss_dssp EEEEEETHHHHHHH-HHHHHHHHHHHHHHHCGG------GTEEEEEEESCCCTTTSCHHHHHHCCEEE-EECCSSHHHHH
T ss_pred EEEEEeCHHHHHhh-hhHHHHHHHHHHHHHhhh------CCcEEEEEecCCccccccHHHHhhcCCeE-EEEcCCHHHHH
Confidence 8999999998884 346677888888665420 0168999999987 455677777 34444444555
Q ss_pred ehhcc
Q 016804 326 IILGA 330 (382)
Q Consensus 326 ~~~~~ 330 (382)
.|+|.
T Consensus 371 ~ilg~ 375 (512)
T 2ius_A 371 TILDQ 375 (512)
T ss_dssp HHHSS
T ss_pred HhcCC
Confidence 55554
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.19 E-value=5.5e-13 Score=124.84 Aligned_cols=77 Identities=21% Similarity=0.239 Sum_probs=51.8
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCCh------hhh
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD------EEI 164 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~------~~~ 164 (382)
.|+++|+...|+. +|++.+ ++++|+|||||||||||++|+|++.|++|+|.++|.++...... ...
T Consensus 9 ~l~l~~~~~~~~~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 80 (227)
T 1qhl_A 9 SLTLINWNGFFAR-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGK 80 (227)
T ss_dssp EEEEEEETTEEEE-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CGGG
T ss_pred EEEEEeeecccCC-------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchhhH
Confidence 5889999876642 456666 89999999999999999999999999999999999886332111 111
Q ss_pred ccceEEEEecC
Q 016804 165 SGLRIGLVFQS 175 (382)
Q Consensus 165 ~~~~Ig~V~Q~ 175 (382)
.+..++|++|+
T Consensus 81 ~~~~i~~v~~~ 91 (227)
T 1qhl_A 81 LKAGVCYSMLD 91 (227)
T ss_dssp BCSSEEEEEEE
T ss_pred hhcCcEEEEEe
Confidence 23369999974
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.7e-12 Score=117.53 Aligned_cols=48 Identities=19% Similarity=0.194 Sum_probs=34.5
Q ss_pred eeEee-eEEEeCCcEEEEEcCCCccHHHHH-HHHHcCCCCCccEEEECCE
Q 016804 106 ILRGV-SFKIRHGEAVGIIGPSGTGKSTIL-KIIAGLLAPDKGEVYIRGR 153 (382)
Q Consensus 106 iL~~v-sl~i~~Ge~vaLiGpNGaGKSTLL-klI~Gl~~p~sG~I~i~G~ 153 (382)
.|+.+ .--+++|+++.|+||||||||||+ +++.+..+...+.+++++.
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 45555 456899999999999999999995 4555555554455555543
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=99.12 E-value=4.1e-13 Score=141.41 Aligned_cols=167 Identities=17% Similarity=0.128 Sum_probs=105.8
Q ss_pred EeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCc-cEEEECCEECCCCCChhhhccceEEEEe
Q 016804 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDK-GEVYIRGRKRAGLISDEEISGLRIGLVF 173 (382)
Q Consensus 95 ~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~s-G~I~i~G~~i~~~~~~~~~~~~~Ig~V~ 173 (382)
++++.-||...+++++++.+.+|+.+.|+||||||||||+++|++++++.. |.+.+++..... ....++++|
T Consensus 38 ~~l~~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~-------~~p~i~~~p 110 (604)
T 3k1j_A 38 KLIDQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDE-------NMPRIKTVP 110 (604)
T ss_dssp SHHHHCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCT-------TSCEEEEEE
T ss_pred cccceEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccc-------cCCcEEEEe
Confidence 445556788889999999999999999999999999999999999999988 888888764321 122588888
Q ss_pred cCC----------------------CCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHH
Q 016804 174 QSA----------------------ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGM 231 (382)
Q Consensus 174 Q~~----------------------~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGq 231 (382)
+.. ..+..+++.+|+........... ...+......+.+|.-+........+|+|+
T Consensus 111 ~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~--~v~~~~~~~~~L~G~~~~~~~~~g~~~~g~ 188 (604)
T 3k1j_A 111 ACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAP--FIDATGAHAGALLGDVRHDPFQSGGLGTPA 188 (604)
T ss_dssp TTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCC--EEECTTCCHHHHHCEECCCCC----CCCCG
T ss_pred cchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCC--EEEcCCCCHHhcCceEEechhhcCCccccc
Confidence 753 11222333333321100000000 000000011223332222223336799999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 016804 232 KKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRS 278 (382)
Q Consensus 232 rQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~ 278 (382)
+|++..++.... ++.+|++||... |++..+..+.+.|.+
T Consensus 189 ~~~i~~g~~~~a-------~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 189 HERVEPGMIHRA-------HKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp GGGEECCHHHHT-------TTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred cccccCceeeec-------CCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 999988888775 699999999988 899888888887764
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=99.12 E-value=5.9e-11 Score=120.78 Aligned_cols=180 Identities=11% Similarity=0.092 Sum_probs=111.4
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc-EEEECCEECCCCCChhhhccceEEEEecCCCCCCCC
Q 016804 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG-EVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSL 182 (382)
Q Consensus 104 ~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG-~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~l 182 (382)
.+.|+++..-+++|+++.|.|++|+|||||+..+++...+..| .|.+.+.+. +......+-++... ..
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~----s~~~l~~r~~~~~~-------~~ 258 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEM----SAQQLVMRMLCAEG-------NI 258 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSS----CHHHHHHHHHHHHH-------TC
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC----CHHHHHHHHHHHHc-------CC
Confidence 3568888878999999999999999999999999987765444 455544321 11111110000000 00
Q ss_pred CHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCC
Q 016804 183 TVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA 262 (382)
Q Consensus 183 TV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPta 262 (382)
.. +.+.. .....++ .+++.++++.++.....-..+..+|.+|.+ +.+|.++.. .+|+++++|+++.
T Consensus 259 ~~-~~l~~-----g~l~~~~-~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~--~~~~~l~~~-----~~~~livID~l~~ 324 (454)
T 2r6a_A 259 NA-QNLRT-----GKLTPED-WGKLTMAMGSLSNAGIYIDDTPSIRVSDIR--AKCRRLKQE-----SGLGMIVIDYLQL 324 (454)
T ss_dssp CH-HHHHT-----SCCCHHH-HHHHHHHHHHHHSSCEEEECCTTCCHHHHH--HHHHHHHTT-----TCCCEEEEECGGG
T ss_pred CH-HHHhc-----CCCCHHH-HHHHHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHH-----cCCCEEEEccHHH
Confidence 11 11111 1233333 334555666665544433345689999876 677888742 4799999999998
Q ss_pred CCCH--------HHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcc---------C--HH--------HHHHhhchhcc
Q 016804 263 GLDP--------IASTVVEDLIRSVHKKGENGLANPGNIASYVVVTH---------Q--HS--------TIRRAVDRLCL 315 (382)
Q Consensus 263 gLD~--------~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTH---------d--l~--------~~~~~aDrv~~ 315 (382)
-.+. ....++.+.|+.++++.+ ++||+++| + .. .+...||.|++
T Consensus 325 ~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~---------i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~ 395 (454)
T 2r6a_A 325 IQGSGRSKENRQQEVSEISRSLKALARELE---------VPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAF 395 (454)
T ss_dssp SCCSCC----CHHHHHHHHHHHHHHHHHHT---------CCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEE
T ss_pred hccCCCCCCCHHHHHHHHHHHHHHHHHHhC---------CeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEE
Confidence 7742 334667777888876521 68999999 2 21 46778888865
Q ss_pred cc
Q 016804 316 FQ 317 (382)
Q Consensus 316 ~~ 317 (382)
|.
T Consensus 396 l~ 397 (454)
T 2r6a_A 396 LY 397 (454)
T ss_dssp EE
T ss_pred Ee
Confidence 54
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=99.08 E-value=6.5e-11 Score=117.13 Aligned_cols=30 Identities=23% Similarity=0.415 Sum_probs=25.9
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCC
Q 016804 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 113 ~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
-+++|+++.|.||+|||||||+..++....
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999888775443
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=99.04 E-value=7.6e-11 Score=105.05 Aligned_cols=37 Identities=27% Similarity=0.362 Sum_probs=33.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCC-----------CccEEEECCEEC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLLAP-----------DKGEVYIRGRKR 155 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~~p-----------~sG~I~i~G~~i 155 (382)
.++|+|+||||||||++.++|...+ ++|+|.++|+++
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 78 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 78 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEE
Confidence 5899999999999999999999876 589999999754
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.88 E-value=4.3e-11 Score=107.90 Aligned_cols=75 Identities=19% Similarity=0.167 Sum_probs=50.2
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHH
Q 016804 109 GVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENV 188 (382)
Q Consensus 109 ~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni 188 (382)
+-.++.++|++++|+||||||||||+++|++.+ |.+.++|.++.. .....+..+|+++|++.+++.+++.+|+
T Consensus 21 ~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 93 (200)
T 4eun_A 21 QSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHS---PENIATMQRGIPLTDEDRWPWLRSLAEW 93 (200)
T ss_dssp -------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSC---HHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred HhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEccccccc---HHHHHHHhcCCCCCCcccccHHHHHHHH
Confidence 334667899999999999999999999999987 899999876531 2111222467888876555555566655
Q ss_pred Hh
Q 016804 189 GF 190 (382)
Q Consensus 189 ~~ 190 (382)
..
T Consensus 94 ~~ 95 (200)
T 4eun_A 94 MD 95 (200)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=7.9e-10 Score=98.56 Aligned_cols=37 Identities=16% Similarity=0.079 Sum_probs=31.3
Q ss_pred HHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 016804 235 VALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVH 280 (382)
Q Consensus 235 VaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~ 280 (382)
...|++|+. +|.++++| ||++|.....++++.|.+..
T Consensus 130 ~~~a~~l~~-------~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAE-------KNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHH-------HTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHH-------HcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 456899987 59999999 99999999999998887653
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.5e-10 Score=109.57 Aligned_cols=52 Identities=29% Similarity=0.517 Sum_probs=36.4
Q ss_pred ceEEEEeE-EEEe-CCeeeeEeeeEEEeC---CcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 90 VLIDCRNV-YKSF-GEKHILRGVSFKIRH---GEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 90 ~~I~~~nv-s~~y-g~~~iL~~vsl~i~~---Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
++|+++|+ +|+| ++.++|+++||+|.+ |++++|+|++||||||+.++|++.+
T Consensus 16 ~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 57999999 9999 778899999999999 9999999999999999999999855
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.82 E-value=1e-09 Score=96.68 Aligned_cols=135 Identities=16% Similarity=0.077 Sum_probs=74.4
Q ss_pred EEEeEEEEeCCeeee--EeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCE--ECCCCCCh--hhhcc
Q 016804 93 DCRNVYKSFGEKHIL--RGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGR--KRAGLISD--EEISG 166 (382)
Q Consensus 93 ~~~nvs~~yg~~~iL--~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~--~i~~~~~~--~~~~~ 166 (382)
.++.|... +...+ +++++++.+| +++|+||||||||||+++|.+++.+..|...-.+. ++...... .....
T Consensus 3 ~i~~l~i~--nf~~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 79 (182)
T 3kta_A 3 YIEKLELK--GFKSYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKY 79 (182)
T ss_dssp EEEEEEEE--SBGGGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSC
T ss_pred eEEEEEEe--CeEeecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCce
Confidence 34444443 23456 7899999999 99999999999999999999999887765432221 11000000 00112
Q ss_pred ceEEEEecCCCC-CC----CCCHHHHHHh-hH--hhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHH
Q 016804 167 LRIGLVFQSAAL-FD----SLTVRENVGF-LL--YENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRV 235 (382)
Q Consensus 167 ~~Ig~V~Q~~~l-~~----~lTV~eni~~-~~--~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRV 235 (382)
..|.++||++.- ++ .++|...+.- +. +...+ .....+.+.++++.+++... .+.-++.||.+++
T Consensus 80 ~~v~~~f~~~~~~~~~~~~~~~i~r~~~~~~~~~~~i~g--~~~~~~~~~~~l~~~~l~~~---~~~~~~qg~~~~l 151 (182)
T 3kta_A 80 AEVAIYFNNEDRGFPIDEDEVVIRRRVYPDGRSSYWLNG--RRATRSEILDILTAAMISPD---GYNIVLQGDITKF 151 (182)
T ss_dssp EEEEEEEECTTCCSSSSSSEEEEEEEECTTSCEEEEETT--EEECHHHHHHHHHHTTCCTT---CTTEECTTCTTHH
T ss_pred EEEEEEEeCCCcccccCCcEEEEEEEEEeCCcEEEEECC--eEcCHHHHHHHHHHcCCCCC---CCEEEEcccHHHH
Confidence 359999998642 11 1222221100 00 00001 01113457788888988642 1234566666554
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=98.82 E-value=3.2e-10 Score=106.45 Aligned_cols=81 Identities=19% Similarity=0.270 Sum_probs=55.1
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHH---cCCCCCccEEE--------ECCEECCCCCChhhhccceEEEE
Q 016804 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIA---GLLAPDKGEVY--------IRGRKRAGLISDEEISGLRIGLV 172 (382)
Q Consensus 104 ~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~---Gl~~p~sG~I~--------i~G~~i~~~~~~~~~~~~~Ig~V 172 (382)
..++++.+ ++|++++|+|||||||||++++|+ |+..|++|.++ .+|.++......... ..+++++
T Consensus 17 ~~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~ 92 (252)
T 4e22_A 17 RLERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPL-AAHLDVR 92 (252)
T ss_dssp ------CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHH-HHTCCEE
T ss_pred hhhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHH-HHcCCEE
Confidence 34455544 789999999999999999999999 99999999999 899876432222222 2358899
Q ss_pred ecCCC-----CCCCCCHHHHH
Q 016804 173 FQSAA-----LFDSLTVRENV 188 (382)
Q Consensus 173 ~Q~~~-----l~~~lTV~eni 188 (382)
||... ++...++.+|+
T Consensus 93 ~~~~~~~~~~~l~~~~v~~~i 113 (252)
T 4e22_A 93 FVSQNGQLQVILEGEDVSNEI 113 (252)
T ss_dssp EEEETTEEEEEETTEECTTGG
T ss_pred EecCCCCceEEECCeehhHHH
Confidence 97532 22334565665
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.80 E-value=4.7e-10 Score=111.57 Aligned_cols=144 Identities=17% Similarity=0.245 Sum_probs=87.0
Q ss_pred CCcE-EEEEcCCCccHHHHHHHHHcCCC-----------CCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCC
Q 016804 116 HGEA-VGIIGPSGTGKSTILKIIAGLLA-----------PDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLT 183 (382)
Q Consensus 116 ~Ge~-vaLiGpNGaGKSTLLklI~Gl~~-----------p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lT 183 (382)
.|-. ++|+|++|||||||++.|+|... |+.|.|.++|.++.- .. ..|++.+.+. ..
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l-------~D-T~G~i~~lp~----~l 244 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIML-------VD-TVGFIRGIPP----QI 244 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEE-------EE-CCCBCSSCCG----GG
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEE-------Ee-CCCchhcCCH----HH
Confidence 3444 99999999999999999999876 677999998865310 00 2455544322 11
Q ss_pred HHHH---HHhhH------hhcCCCC-H---HHHHHHHHHHHHHcCCcccc----cCCCCCCChHHHHHHHHH----HHH-
Q 016804 184 VREN---VGFLL------YENSKMR-D---EQISELVKENLAAVGLKGVE----DRLPSELSGGMKKRVALA----RSI- 241 (382)
Q Consensus 184 V~en---i~~~~------~~~~~~~-~---~~~~~~v~~~L~~~gL~~~~----~~~~~~LSGGqrQRVaIA----rAL- 241 (382)
+... +.... ....... . .+..+.+.++++.+++.+.. ..++..+|+|++||+.++ +++
T Consensus 245 ve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~ 324 (364)
T 2qtf_A 245 VDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELY 324 (364)
T ss_dssp HHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhc
Confidence 1111 11000 0011111 1 12223356677777765432 334567888899998887 555
Q ss_pred hcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 016804 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK 282 (382)
Q Consensus 242 ~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~ 282 (382)
.. +|++ +|+|++|.....++++.|.++...
T Consensus 325 ~~-------~~~~----~~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 325 SP-------IFDV----IPISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp SC-------EEEE----EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CC-------CCcE----EEEECCCCcCHHHHHHHHHHHhcc
Confidence 31 2444 899999999999999999887654
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.75 E-value=1.4e-11 Score=123.42 Aligned_cols=139 Identities=12% Similarity=0.134 Sum_probs=83.0
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCC-CCCCC
Q 016804 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAA-LFDSL 182 (382)
Q Consensus 104 ~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~-l~~~l 182 (382)
..+|+++|+.+++|++++|+||||||||||+++|+|. .+|++..-. .. ... ....+|++||... +++..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~--~~---~~~--~~~~lg~~~q~~~~l~dd~ 225 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVN--LP---LDR--LNFELGVAIDQFLVVFEDV 225 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCS--SC---TTT--HHHHHGGGTTCSCEEETTC
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEe--cc---chh--HHHHHHHhcchhHHHHHHH
Confidence 3689999999999999999999999999999999995 467776521 11 111 1113667777754 23333
Q ss_pred CHHHHHHhhHhhcCCCCHHHHHHHHHHHHH---HcC------------Cc-ccccCCCCCCChHHHHHHHHHHHHhcCCC
Q 016804 183 TVRENVGFLLYENSKMRDEQISELVKENLA---AVG------------LK-GVEDRLPSELSGGMKKRVALARSIIFDNT 246 (382)
Q Consensus 183 TV~eni~~~~~~~~~~~~~~~~~~v~~~L~---~~g------------L~-~~~~~~~~~LSGGqrQRVaIArAL~~~~~ 246 (382)
+...++.- .............+...++ .+. +. ...+.....+++|++||++.+.+++.
T Consensus 226 ~~~~~~~r---~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~--- 299 (377)
T 1svm_A 226 KGTGGESR---DLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRP--- 299 (377)
T ss_dssp CCSTTTTT---TCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCC---
T ss_pred HHHHHHHh---hccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCC---
Confidence 32221100 0000000000112233333 000 11 23455567899999999998877764
Q ss_pred CCCCCCcEEE-EeCCCC
Q 016804 247 KESVEPEVLL-YDEPTA 262 (382)
Q Consensus 247 ~~a~~P~iLL-LDEPta 262 (382)
.|++++ ||+|+.
T Consensus 300 ----~pDLliyLd~~~~ 312 (377)
T 1svm_A 300 ----KDYLKHCLERSEF 312 (377)
T ss_dssp ----CHHHHHHHHTCTH
T ss_pred ----CCCeEEEEeCCHH
Confidence 588877 888876
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=3.9e-10 Score=101.60 Aligned_cols=60 Identities=22% Similarity=0.268 Sum_probs=48.2
Q ss_pred EeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEE--EECCEEC
Q 016804 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV--YIRGRKR 155 (382)
Q Consensus 95 ~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I--~i~G~~i 155 (382)
+|+++.++.....+.+++..++|++++|+||||||||||+++|++.+. ..|.+ +++|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 3 TNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNV 64 (200)
T ss_dssp -------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHH
T ss_pred CCCcccccccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchh
Confidence 577888888888899999999999999999999999999999999987 77988 8888654
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.67 E-value=7.5e-09 Score=102.87 Aligned_cols=70 Identities=16% Similarity=0.175 Sum_probs=46.1
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEE-EECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHH
Q 016804 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV-YIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVREN 187 (382)
Q Consensus 113 ~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I-~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~en 187 (382)
-+++|+++.|.||+|||||||+..+++...+..|.| ++++.... ... ...++|+.+|+..+....++.+.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~---~~~--ra~rlgv~~~~l~i~~~~~~e~~ 127 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL---DPV--YAKNLGVDLKSLLISQPDHGEQA 127 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC---CHH--HHHHHTCCGGGCEEECCSSHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc---chH--HHHHcCCchhhhhhhhccCHHHH
Confidence 388999999999999999999999999887777765 55554311 111 11235665655444333344433
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.65 E-value=2e-09 Score=105.27 Aligned_cols=83 Identities=22% Similarity=0.175 Sum_probs=61.4
Q ss_pred eEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCC----hhhhc---cceEEEE-ecCCCC
Q 016804 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS----DEEIS---GLRIGLV-FQSAAL 178 (382)
Q Consensus 107 L~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~----~~~~~---~~~Ig~V-~Q~~~l 178 (382)
+++++|++++|++++|+||||+||||++..|++.+.+..|+|.+.+.|+..... ..+.. +..++++ +|....
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~ 174 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNA 174 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCC
Confidence 478999999999999999999999999999999999999999998877542110 11111 3458999 777555
Q ss_pred CCCCCHHHHHH
Q 016804 179 FDSLTVRENVG 189 (382)
Q Consensus 179 ~~~lTV~eni~ 189 (382)
.+..++++++.
T Consensus 175 ~p~~~~~~~l~ 185 (320)
T 1zu4_A 175 DPASVVFDAIK 185 (320)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 55444455543
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.64 E-value=6.7e-11 Score=122.43 Aligned_cols=144 Identities=14% Similarity=0.228 Sum_probs=95.7
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
..+++++.+.|....+++++++++++| +.|+||||+|||||+++|++... .+.+.++|.++........ ..++.
T Consensus 40 k~~l~~lv~~l~~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~--~~~v~ 113 (499)
T 2dhr_A 40 KEELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVG--AARVR 113 (499)
T ss_dssp HHHHHHHHHHHHCGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHH--HHHHH
T ss_pred HHHHHHHHHHhhchhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhH--HHHHH
Confidence 345666666676667899999999999 99999999999999999999875 7899999877643211111 12466
Q ss_pred EEecCCC-CCCCCCHHHHHHhhHhhcC-C--CCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCC
Q 016804 171 LVFQSAA-LFDSLTVRENVGFLLYENS-K--MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT 246 (382)
Q Consensus 171 ~V~Q~~~-l~~~lTV~eni~~~~~~~~-~--~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~ 246 (382)
.+||... ..+...+.|++........ . ...++..+.+.+++. +||||++|+..|++|..+
T Consensus 114 ~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~-------------~Ldg~~~~~~viviAatn--- 177 (499)
T 2dhr_A 114 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV-------------EMDGFEKDTAIVVMAATN--- 177 (499)
T ss_dssp HHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH-------------HGGGCCSSCCCEEEECCS---
T ss_pred HHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHH-------------HhcccccCccEEEEEecC---
Confidence 7888864 4566667777743221111 0 112333334444443 367888888888877765
Q ss_pred CCCCCCcEEEEeCCCC
Q 016804 247 KESVEPEVLLYDEPTA 262 (382)
Q Consensus 247 ~~a~~P~iLLLDEPta 262 (382)
+|++ |||+.-
T Consensus 178 ----~p~~--LD~aLl 187 (499)
T 2dhr_A 178 ----RPDI--LDPALL 187 (499)
T ss_dssp ----CGGG--SCTTTS
T ss_pred ----Chhh--cCcccc
Confidence 4665 777765
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.61 E-value=2.2e-08 Score=98.57 Aligned_cols=126 Identities=19% Similarity=0.199 Sum_probs=80.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhHhhc
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYEN 195 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~ 195 (382)
..-.++|+|++|+|||||++.|+|... . ..+.+... ....++.+.++.. .
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~-~-----~~~~~~~t-------~~~~~~~~~~~~~-----------~------ 215 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKP-E-----IASYPFTT-------RGINVGQFEDGYF-----------R------ 215 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCC-E-----EECCTTCS-------SCEEEEEEEETTE-----------E------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-c-----cCCCCCee-------eceeEEEEEecCc-----------e------
Confidence 445799999999999999999998752 1 11111110 1113455544311 0
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEe-CCCCCCCHHHHHHHHH
Q 016804 196 SKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYD-EPTAGLDPIASTVVED 274 (382)
Q Consensus 196 ~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLD-EPtagLD~~~~~~l~~ 274 (382)
+..++..+..+..+.++|+|++|++. +.+... ++-++++| +|++++|......+.+
T Consensus 216 ---------------~~l~Dt~G~~~~~~~~~~~~~~~~~~-~~~~~a-------d~illV~D~s~~~~~~~~~~~~~~~ 272 (357)
T 2e87_A 216 ---------------YQIIDTPGLLDRPISERNEIEKQAIL-ALRYLG-------NLIIYIFDPSEHCGFPLEEQIHLFE 272 (357)
T ss_dssp ---------------EEEEECTTTSSSCSTTSCHHHHHHHH-GGGGTC-------SEEEEEECTTCTTSSCHHHHHHHHH
T ss_pred ---------------EEEEeCCCccccchhhhhHHHHHHHH-HHHhcC-------CEEEEEEeCCccccCCHHHHHHHHH
Confidence 00111222334567789999999876 444433 58899999 9999999998877777
Q ss_pred HHHHHHHcCCCCCCCCCCceEEEEEc--cCHHH
Q 016804 275 LIRSVHKKGENGLANPGNIASYVVVT--HQHST 305 (382)
Q Consensus 275 lL~~l~~~g~~~~~~~~~~~tiIivT--Hdl~~ 305 (382)
.+.++.. + ..+|+|. ||+..
T Consensus 273 ~i~~~~~-~----------~piilV~NK~Dl~~ 294 (357)
T 2e87_A 273 EVHGEFK-D----------LPFLVVINKIDVAD 294 (357)
T ss_dssp HHHHHTT-T----------SCEEEEECCTTTCC
T ss_pred HHHHhcC-C----------CCEEEEEECcccCC
Confidence 7666543 3 3677777 88753
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=98.60 E-value=4.6e-08 Score=106.01 Aligned_cols=81 Identities=14% Similarity=0.112 Sum_probs=59.4
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEE-Ec
Q 016804 223 LPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA-GLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVV-VT 300 (382)
Q Consensus 223 ~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPta-gLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIi-vT 300 (382)
.+.-+|.|+.+|..++++++. ++++||+|||.. +||......+++.+.+...+. .++++ +|
T Consensus 187 ~I~v~T~G~l~r~l~~~~~l~-------~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~----------~iIl~SAT 249 (773)
T 2xau_A 187 ILKYMTDGMLLREAMEDHDLS-------RYSCIILDEAHERTLATDILMGLLKQVVKRRPDL----------KIIIMSAT 249 (773)
T ss_dssp SEEEEEHHHHHHHHHHSTTCT-------TEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTC----------EEEEEESC
T ss_pred CEEEECHHHHHHHHhhCcccc-------CCCEEEecCccccccchHHHHHHHHHHHHhCCCc----------eEEEEecc
Confidence 455689999999999998876 699999999996 999876655555554433222 46777 49
Q ss_pred cCHHHHHHhhchhccccccc
Q 016804 301 HQHSTIRRAVDRLCLFQIFG 320 (382)
Q Consensus 301 Hdl~~~~~~aDrv~~~~~~~ 320 (382)
|+.+.+.++.+...++...|
T Consensus 250 ~~~~~l~~~~~~~~vi~v~g 269 (773)
T 2xau_A 250 LDAEKFQRYFNDAPLLAVPG 269 (773)
T ss_dssp SCCHHHHHHTTSCCEEECCC
T ss_pred ccHHHHHHHhcCCCcccccC
Confidence 99988888877654444433
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.60 E-value=2.2e-08 Score=89.14 Aligned_cols=35 Identities=29% Similarity=0.327 Sum_probs=30.3
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc
Q 016804 112 FKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG 146 (382)
Q Consensus 112 l~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG 146 (382)
++|.+|++++|+||||||||||+++|++++.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46889999999999999999999999999977766
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.57 E-value=3.2e-08 Score=101.87 Aligned_cols=151 Identities=18% Similarity=0.293 Sum_probs=89.7
Q ss_pred EEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEe
Q 016804 94 CRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVF 173 (382)
Q Consensus 94 ~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~ 173 (382)
++++...+.....++++++.+++| +.|+||+|+|||||+++|++... . .+-++.
T Consensus 28 l~e~v~~l~~~~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~----------~--------------~f~~is 81 (476)
T 2ce7_A 28 LKEVVEFLKDPSKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEAN----------V--------------PFFHIS 81 (476)
T ss_dssp HHHHHHHHHCTHHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHT----------C--------------CEEEEE
T ss_pred HHHHHHHhhChHHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcC----------C--------------CeeeCC
Confidence 334433344445677788888888 88999999999999999998321 0 111111
Q ss_pred cCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCc
Q 016804 174 QSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPE 253 (382)
Q Consensus 174 Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~ 253 (382)
- ..+. .+ +.. .+++++|..+++|... .|.
T Consensus 82 ~-~~~~-~~----------------------------------------~~g--~~~~~~r~lf~~A~~~-------~p~ 110 (476)
T 2ce7_A 82 G-SDFV-EL----------------------------------------FVG--VGAARVRDLFAQAKAH-------APC 110 (476)
T ss_dssp G-GGTT-TC----------------------------------------CTT--HHHHHHHHHHHHHHHT-------CSE
T ss_pred H-HHHH-HH----------------------------------------Hhc--ccHHHHHHHHHHHHhc-------CCC
Confidence 0 0000 00 000 1677888889999875 599
Q ss_pred EEEEeCC----------CCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccch
Q 016804 254 VLLYDEP----------TAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHID 323 (382)
Q Consensus 254 iLLLDEP----------tagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~ 323 (382)
||++||+ +.+.|......+.+++..+..-+. .. ...||.+||+.+.+ |.- +++ .|+.+
T Consensus 111 ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~-----~~-~viVIaaTn~~~~L----d~a-llR-~gRFd 178 (476)
T 2ce7_A 111 IVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDS-----KE-GIIVMAATNRPDIL----DPA-LLR-PGRFD 178 (476)
T ss_dssp EEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCG-----GG-TEEEEEEESCGGGS----CGG-GGS-TTSSC
T ss_pred EEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCC-----CC-CEEEEEecCChhhh----chh-hcc-cCcce
Confidence 9999999 447777777777777777742100 00 15889999997543 321 122 35566
Q ss_pred heehhccCCCCc
Q 016804 324 VVIILGAVAPDK 335 (382)
Q Consensus 324 ~~~~~~~~~~~~ 335 (382)
..+.++. |+.
T Consensus 179 ~~i~i~~--Pd~ 188 (476)
T 2ce7_A 179 KKIVVDP--PDM 188 (476)
T ss_dssp EEEECCC--CCH
T ss_pred eEeecCC--CCH
Confidence 6555553 543
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=1.3e-07 Score=92.89 Aligned_cols=176 Identities=19% Similarity=0.238 Sum_probs=88.0
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHc--CCCCCccEEEECCEECCCCCChhhhccceEEEEecCCC-CCC
Q 016804 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAG--LLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAA-LFD 180 (382)
Q Consensus 104 ~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~G--l~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~-l~~ 180 (382)
..+|++++++++ .++|+|++|||||||++.|.| ++++.+|.++-....+.-..... .....+..++.+. .|.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~--~~~~~~~~~~~~~~~~~ 98 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDD--GTREYAEFLHLPRKKFT 98 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSS--CSCCEEEETTSTTCCBS
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCC--cccceeeeecCCCcccC
Confidence 358999999998 899999999999999999999 67888887764443321000000 0012344443322 111
Q ss_pred CC-CHHHHHHhhHhhc----CCCCHHHHHHHH----HHHHHHcCCcccccC-CCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 181 SL-TVRENVGFLLYEN----SKMRDEQISELV----KENLAAVGLKGVEDR-LPSELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 181 ~l-TV~eni~~~~~~~----~~~~~~~~~~~v----~~~L~~~gL~~~~~~-~~~~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
.. .+.+.+....... .+.+...+.-.+ ..-+..+++.+..+. ...+.++.++|+..++++.+.
T Consensus 99 ~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~------- 171 (360)
T 3t34_A 99 DFAAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIE------- 171 (360)
T ss_dssp CHHHHHHHHHHHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHH-------
T ss_pred CHHHHHHHHHHHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhh-------
Confidence 10 1111111000000 000000000000 000011111111111 123467889999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcc
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTH 301 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTH 301 (382)
+|+++||.-..+..|... ....++++++...+. .+++++|.
T Consensus 172 ~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~---------~~i~V~nK 212 (360)
T 3t34_A 172 KPNCIILAISPANQDLAT-SDAIKISREVDPSGD---------RTFGVLTK 212 (360)
T ss_dssp SSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCT---------TEEEEEEC
T ss_pred cCCeEEEEeecccCCcCC-HHHHHHHHHhcccCC---------CEEEEEeC
Confidence 599888875444455443 445666666655442 47888876
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.47 E-value=6e-07 Score=87.07 Aligned_cols=51 Identities=16% Similarity=0.096 Sum_probs=39.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH---cCCCCCCCCCCceEEEEEccCHHHHHHhhch
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHK---KGENGLANPGNIASYVVVTHQHSTIRRAVDR 312 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~---~g~~~~~~~~~~~tiIivTHdl~~~~~~aDr 312 (382)
+|.+|++||+... |......+.+.+.++.. .+ .++|++||+.+....+.++
T Consensus 125 ~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~----------~~iI~~~~~~~~~~~l~~~ 178 (389)
T 1fnn_A 125 LYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFR----------IALVIVGHNDAVLNNLDPS 178 (389)
T ss_dssp CCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCC----------EEEEEEESSTHHHHTSCHH
T ss_pred CeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCC----------EEEEEEECCchHHHHhCHH
Confidence 5889999999876 88888888888877655 23 6899999998765555443
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=98.45 E-value=3.7e-07 Score=90.09 Aligned_cols=129 Identities=11% Similarity=0.143 Sum_probs=83.4
Q ss_pred eeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHH
Q 016804 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVR 185 (382)
Q Consensus 106 iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~ 185 (382)
-|+.+.--+.+|+++.|.|++|+|||||+.-++.-... .| ..+.|+.= .++..
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~-------~g--------------~~Vl~fSl------Ems~~ 87 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN-------DD--------------RGVAVFSL------EMSAE 87 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH-------TT--------------CEEEEEES------SSCHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-------cC--------------CeEEEEeC------CCCHH
Confidence 34444445899999999999999999999888754321 11 13555431 23433
Q ss_pred HHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCC
Q 016804 186 ENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265 (382)
Q Consensus 186 eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD 265 (382)
+-+ .++......+.+..+.+ ..||.+++||+..|...+. +++++|.|+|...
T Consensus 88 ql~----------------~Rlls~~~~v~~~~l~~---g~Ls~~e~~~l~~a~~~l~-------~~~l~I~d~~~~s-- 139 (338)
T 4a1f_A 88 QLA----------------LRALSDLTSINMHDLES---GRLDDDQWENLAKCFDHLS-------QKKLFFYDKSYVR-- 139 (338)
T ss_dssp HHH----------------HHHHHHHHCCCHHHHHH---TCCCHHHHHHHHHHHHHHH-------HSCEEEECCTTCC--
T ss_pred HHH----------------HHHHHHhhCCCHHHHhc---CCCCHHHHHHHHHHHHHHh-------cCCeEEeCCCCCc--
Confidence 322 22222222233333322 3799999999999999886 4899999999754
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCCCCCCCceEEEEEcc
Q 016804 266 PIASTVVEDLIRSVHKKG-ENGLANPGNIASYVVVTH 301 (382)
Q Consensus 266 ~~~~~~l~~lL~~l~~~g-~~~~~~~~~~~tiIivTH 301 (382)
..++...++++.++. + ..+|+|-|
T Consensus 140 ---i~~i~~~ir~l~~~~gg---------~~lIVIDy 164 (338)
T 4a1f_A 140 ---IEQIRLQLRKLKSQHKE---------LGIAFIDY 164 (338)
T ss_dssp ---HHHHHHHHHHHHHHCTT---------EEEEEEEE
T ss_pred ---HHHHHHHHHHHHHhcCC---------CCEEEEec
Confidence 336677777776652 2 57888753
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.43 E-value=5.9e-08 Score=85.99 Aligned_cols=36 Identities=11% Similarity=0.118 Sum_probs=31.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCC-CccEEEEC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLLAP-DKGEVYIR 151 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~~p-~sG~I~i~ 151 (382)
+|++++|+||||||||||+++|++++++ ..|.|...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~t 40 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHT 40 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeecc
Confidence 6999999999999999999999999874 56666554
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.42 E-value=7.8e-09 Score=92.88 Aligned_cols=122 Identities=19% Similarity=0.236 Sum_probs=66.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKM 198 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~ 198 (382)
+++|+|||||||||+.++|+++ |...+++.++ .+ .+. + +.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d~~---------~~-~~~---~-----~~----------------- 43 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDADVV---------AR-EVV---A-----KD----------------- 43 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHHHH---------HH-HTT---C-----SS-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccchHHH---------HH-HHc---c-----CC-----------------
Confidence 6899999999999999999994 5555543211 00 000 0 00
Q ss_pred CHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 016804 199 RDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRS 278 (382)
Q Consensus 199 ~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~ 278 (382)
. ..+.++.+.+|...+ .+.|+.+|..+++.+.. +|+.+..+ .+.++|..+..+.+.+..
T Consensus 44 ~-----~~~~~i~~~~g~~~~-------~~~g~~~r~~l~~~~f~-------~~~~~~~l--~~~~~p~v~~~~~~~~~~ 102 (206)
T 1jjv_A 44 S-----PLLSKIVEHFGAQIL-------TEQGELNRAALRERVFN-------HDEDKLWL--NNLLHPAIRERMKQKLAE 102 (206)
T ss_dssp C-----HHHHHHHHHHCTTCC-------------CHHHHHHHHHT-------CHHHHHHH--HHHHHHHHHHHHHHHHHT
T ss_pred h-----HHHHHHHHHhCHHHh-------ccCccccHHHHHHHHhC-------CHHHHHHH--HhccCHHHHHHHHHHHHh
Confidence 0 012334455554322 36789999999988875 35543222 334556655555544432
Q ss_pred HHHcCCCCCCCCCCceEEEEEccCHHHH--HHhhchh
Q 016804 279 VHKKGENGLANPGNIASYVVVTHQHSTI--RRAVDRL 313 (382)
Q Consensus 279 l~~~g~~~~~~~~~~~tiIivTHdl~~~--~~~aDrv 313 (382)
. .+ .++|+.+|.+.+. ...||++
T Consensus 103 ~--~~----------~~vv~~~~~l~e~~~~~~~d~v 127 (206)
T 1jjv_A 103 Q--TA----------PYTLFVVPLLIENKLTALCDRI 127 (206)
T ss_dssp C--CS----------SEEEEECTTTTTTTCGGGCSEE
T ss_pred c--CC----------CEEEEEechhhhcCcHhhCCEE
Confidence 2 12 2788889987665 4556655
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.3e-07 Score=84.83 Aligned_cols=38 Identities=24% Similarity=0.195 Sum_probs=24.9
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 104 ~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
..+++||||++.+|++++|+||+||||||+.+.|++.+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 46899999999999999999999999999999999766
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=3e-08 Score=105.71 Aligned_cols=135 Identities=16% Similarity=0.112 Sum_probs=80.7
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC--CccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHH
Q 016804 111 SFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP--DKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENV 188 (382)
Q Consensus 111 sl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p--~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni 188 (382)
|+++++|..++|+|+||+|||||++.|++...+ ..|+| .+|..+..+.. .+. ++.+++.+|...++.. ++..|+
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~-~e~-~~giti~~~~~~~~~~-~~~~nl 78 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTP-EAK-LHRTTVRTGVAPLLFR-GHRVFL 78 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSH-HHH-HTTSCCSCEEEEEEET-TEEEEE
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCH-HHH-hcCCeEEecceEEeeC-CEEEEE
Confidence 467789999999999999999999999987765 67888 67765544322 111 2246676666554432 222221
Q ss_pred HhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHH
Q 016804 189 GFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIA 268 (382)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~ 268 (382)
.. ..|..++ +-...+++-. .+.-++++| |+.++++..
T Consensus 79 iD----------------------TpG~~~f--------------~~~~~~~l~~------ad~~ilVvD-~~~g~~~qt 115 (665)
T 2dy1_A 79 LD----------------------APGYGDF--------------VGEIRGALEA------ADAALVAVS-AEAGVQVGT 115 (665)
T ss_dssp EE----------------------CCCSGGG--------------HHHHHHHHHH------CSEEEEEEE-TTTCSCHHH
T ss_pred Ee----------------------CCCccch--------------HHHHHHHHhh------cCcEEEEEc-CCcccchhH
Confidence 10 0011110 0012222221 268899999 999999877
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHH
Q 016804 269 STVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTI 306 (382)
Q Consensus 269 ~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~ 306 (382)
+.. ++.+.+.+ ..+|++.|.++..
T Consensus 116 ~~~----~~~~~~~~----------ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 116 ERA----WTVAERLG----------LPRMVVVTKLDKG 139 (665)
T ss_dssp HHH----HHHHHHTT----------CCEEEEEECGGGC
T ss_pred HHH----HHHHHHcc----------CCEEEEecCCchh
Confidence 633 33333344 4788899988764
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=1.1e-07 Score=87.70 Aligned_cols=41 Identities=22% Similarity=0.186 Sum_probs=36.1
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEEC
Q 016804 111 SFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKR 155 (382)
Q Consensus 111 sl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i 155 (382)
+.+.++|++++|+|+||||||||+++|+|+ .|+|.+.+++.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~ 54 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPV 54 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTH
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCH
Confidence 345579999999999999999999999998 78899988753
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.9e-08 Score=98.55 Aligned_cols=49 Identities=22% Similarity=0.372 Sum_probs=43.1
Q ss_pred EeEEEEeCCeeeeEeeeEEEeCCc------EEEEEcCCCccHHHHHHHHHcCCCC
Q 016804 95 RNVYKSFGEKHILRGVSFKIRHGE------AVGIIGPSGTGKSTILKIIAGLLAP 143 (382)
Q Consensus 95 ~nvs~~yg~~~iL~~vsl~i~~Ge------~vaLiGpNGaGKSTLLklI~Gl~~p 143 (382)
+.+++.|++...|++++..+.+++ ++||+||||||||||+++|++++.+
T Consensus 64 rll~~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 64 RLLSFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred HHHHHhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 445666778889999999998887 9999999999999999999999873
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.29 E-value=8.7e-08 Score=86.40 Aligned_cols=43 Identities=23% Similarity=0.209 Sum_probs=38.2
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEEC
Q 016804 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKR 155 (382)
Q Consensus 113 ~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i 155 (382)
..++|++++|+|+||||||||+++|++++++..|.|.+.+.+.
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 3578999999999999999999999999998889998876553
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=98.24 E-value=2.9e-07 Score=84.19 Aligned_cols=31 Identities=23% Similarity=0.363 Sum_probs=27.0
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHcCCC
Q 016804 112 FKIRHGEAVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 112 l~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
+...+|++++|+||||||||||++.|++.++
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3445899999999999999999999999876
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=98.23 E-value=2.8e-07 Score=88.74 Aligned_cols=154 Identities=13% Similarity=0.167 Sum_probs=86.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCC---CCC--CCC--HHHHH
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAA---LFD--SLT--VRENV 188 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~---l~~--~lT--V~eni 188 (382)
++.+++|+|++|+|||||++.|.|.. +.+..... ... .....|++.++.. +++ +.- ....+
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~------~~i~s~~~-----~tT-r~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l 74 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK------ISITSRKA-----QTT-RHRIVGIHTEGAYQAIYVDTPGLHMEEKRAI 74 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS------EEECCCCS-----SCC-SSCEEEEEEETTEEEEEESSSSCCHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC------ccccCCCC-----Ccc-eeeEEEEEEECCeeEEEEECcCCCccchhhH
Confidence 44589999999999999999999963 22211110 000 1123567776542 111 110 00000
Q ss_pred HhhHhhcCCCCHHHHHHHHHHHHHHcCCccc-ccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHH
Q 016804 189 GFLLYENSKMRDEQISELVKENLAAVGLKGV-EDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPI 267 (382)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~-~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~ 267 (382)
. +...+.+..+++.+++--+ .+. ..+|.|++ .+++++.. ...|.++++ +.+|..
T Consensus 75 ~-----------~~~~~~~~~~l~~~D~vl~Vvd~--~~~~~~~~---~i~~~l~~-----~~~P~ilvl----NK~D~~ 129 (301)
T 1ega_A 75 N-----------RLMNKAASSSIGDVELVIFVVEG--TRWTPDDE---MVLNKLRE-----GKAPVILAV----NKVDNV 129 (301)
T ss_dssp H-----------HHHTCCTTSCCCCEEEEEEEEET--TCCCHHHH---HHHHHHHS-----SSSCEEEEE----ESTTTC
T ss_pred H-----------HHHHHHHHHHHhcCCEEEEEEeC--CCCCHHHH---HHHHHHHh-----cCCCEEEEE----ECcccC
Confidence 0 0000001112222222222 222 22898886 56677753 136999998 789987
Q ss_pred H-HHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 268 A-STVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 268 ~-~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
. +..+.+.+.++.+... ....+.+++|+-..+..+.|.+
T Consensus 130 ~~~~~~~~~l~~l~~~~~-------~~~~i~iSA~~g~~v~~l~~~i 169 (301)
T 1ega_A 130 QEKADLLPHLQFLASQMN-------FLDIVPISAETGLNVDTIAAIV 169 (301)
T ss_dssp CCHHHHHHHHHHHHTTSC-------CSEEEECCTTTTTTHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcC-------cCceEEEECCCCCCHHHHHHHH
Confidence 6 6778888888876421 0036778888888888888877
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.22 E-value=5.1e-07 Score=81.84 Aligned_cols=36 Identities=22% Similarity=0.287 Sum_probs=30.6
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCC-CccEEEE
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAP-DKGEVYI 150 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p-~sG~I~i 150 (382)
++|++++|+||||||||||++.|++.+++ ..+.+..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~ 42 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISM 42 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCE
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEec
Confidence 58999999999999999999999999987 4444443
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=98.21 E-value=2.9e-06 Score=86.35 Aligned_cols=39 Identities=18% Similarity=0.154 Sum_probs=33.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEE
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~ 154 (382)
++.+++++|||||||||++..|++.+.+..++|.+-+.|
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD 134 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 588999999999999999999999998877777765543
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=98.20 E-value=8.1e-09 Score=101.29 Aligned_cols=65 Identities=22% Similarity=0.273 Sum_probs=57.0
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEEC
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKR 155 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i 155 (382)
+++.+++.++|+.+.+++++++.+.+|.+++|+|++|||||||++.|++.+.+..|+|.+-+.+.
T Consensus 30 ~ie~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~ 94 (341)
T 2p67_A 30 LVESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP 94 (341)
T ss_dssp HHHCCCHHHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred HhhcCCchhhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence 46667777778777899999999999999999999999999999999999988888888877654
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=3.2e-07 Score=79.98 Aligned_cols=37 Identities=24% Similarity=0.368 Sum_probs=32.7
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEEC
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKR 155 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i 155 (382)
.+|++++|+||||||||||+++|++.+ |.+.+++.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccc
Confidence 468999999999999999999999975 8889988654
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=98.17 E-value=3.3e-07 Score=95.90 Aligned_cols=43 Identities=35% Similarity=0.400 Sum_probs=38.5
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc-EEE-ECCEEC
Q 016804 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG-EVY-IRGRKR 155 (382)
Q Consensus 113 ~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG-~I~-i~G~~i 155 (382)
.+++|++++|+|+||||||||+++|+|++.|++| +|. ++|.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 5779999999999999999999999999999987 785 888654
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.14 E-value=3.1e-09 Score=103.30 Aligned_cols=56 Identities=18% Similarity=0.325 Sum_probs=45.9
Q ss_pred EEEEeCCeeeeEeeeEEEeCCcE--EEEEcCCCccHHHHHHHHHcCCCCCccEEEECC
Q 016804 97 VYKSFGEKHILRGVSFKIRHGEA--VGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG 152 (382)
Q Consensus 97 vs~~yg~~~iL~~vsl~i~~Ge~--vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G 152 (382)
++..||...+++.++..++.|++ +.+.||+|+||||+++++++.+.+..+.+.+.+
T Consensus 24 ~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~ 81 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLE 81 (340)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEE
T ss_pred HHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEE
Confidence 33346777889999999999998 999999999999999999998877666544433
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=1.2e-06 Score=78.56 Aligned_cols=31 Identities=26% Similarity=0.311 Sum_probs=28.2
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHcCCC
Q 016804 112 FKIRHGEAVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 112 l~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
-++++|++++|+|++|||||||+++|++.++
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3678899999999999999999999999864
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=98.03 E-value=8.1e-08 Score=100.05 Aligned_cols=62 Identities=21% Similarity=0.305 Sum_probs=52.9
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~ 154 (382)
+-++++.+.|++..++.++++++ +|+.++|+||||||||||+++|++...+..|+|.+.|..
T Consensus 84 ~G~~~vk~~i~~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~ 145 (543)
T 3m6a_A 84 HGLEKVKERILEYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVR 145 (543)
T ss_dssp SSCHHHHHHHHHHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--
T ss_pred ccHHHHHHHHHHHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccc
Confidence 33566777776667889999998 899999999999999999999999999999999988743
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=98.03 E-value=1.5e-05 Score=77.15 Aligned_cols=122 Identities=11% Similarity=0.142 Sum_probs=74.9
Q ss_pred eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCH
Q 016804 105 HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTV 184 (382)
Q Consensus 105 ~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV 184 (382)
+.|+.+.--+++|+++.|.|++|+|||||+..++.-.-- .| ..+.|+.=+ ++.
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-------~g--------------~~vl~~slE------~s~ 108 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-------ND--------------DVVNLHSLE------MGK 108 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-------TT--------------CEEEEEESS------SCH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-------cC--------------CeEEEEECC------CCH
Confidence 345555545899999999999999999998888742110 01 135555421 344
Q ss_pred HHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCC
Q 016804 185 RENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGL 264 (382)
Q Consensus 185 ~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagL 264 (382)
.+-.. ++......+.+..+.+.. ..||.++++|+..|...+. ++++++.|+|...
T Consensus 109 ~~l~~----------------R~~~~~~~i~~~~l~~~~-~~l~~~~~~~l~~a~~~l~-------~~~i~i~d~~~~~- 163 (315)
T 3bh0_A 109 KENIK----------------RLIVTAGSINAQKIKAAR-RDFASEDWGKLSMAIGEIS-------NSNINIFDKAGQS- 163 (315)
T ss_dssp HHHHH----------------HHHHHHTTCCHHHHHSCH-HHHCSSCHHHHHHHHHHHH-------TSCEEEECCSCCB-
T ss_pred HHHHH----------------HHHHHHcCCCHHHHhcCC-CCCCHHHHHHHHHHHHHHh-------CCCEEEECCCCCC-
Confidence 33322 111111112222221111 2389999999999998886 4889999998643
Q ss_pred CHHHHHHHHHHHHHHHHc
Q 016804 265 DPIASTVVEDLIRSVHKK 282 (382)
Q Consensus 265 D~~~~~~l~~lL~~l~~~ 282 (382)
..++...++++.++
T Consensus 164 ----~~~i~~~i~~l~~~ 177 (315)
T 3bh0_A 164 ----VNYIWSKTRQTKRK 177 (315)
T ss_dssp ----HHHHHHHHHHHHHT
T ss_pred ----HHHHHHHHHHHHHh
Confidence 34466677777655
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.02 E-value=8e-05 Score=68.16 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=24.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCccE
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLLAPDKGE 147 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~~p~sG~ 147 (382)
.++|+|++|+|||||++.|+|...+.++.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~ 59 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGT 59 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCC
Confidence 47899999999999999999987776653
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.99 E-value=2.2e-06 Score=74.25 Aligned_cols=33 Identities=30% Similarity=0.451 Sum_probs=28.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG 152 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G 152 (382)
.|++++|+||||||||||+++|++.+.+ +.+++
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4788999999999999999999998754 55654
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.89 E-value=1.5e-06 Score=83.71 Aligned_cols=30 Identities=27% Similarity=0.450 Sum_probs=26.1
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCC
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAPD 144 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~ 144 (382)
..+..+.|.||+|+|||||++.+++...+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 457889999999999999999999877554
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=1.4e-06 Score=78.73 Aligned_cols=59 Identities=29% Similarity=0.369 Sum_probs=42.2
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCC---CCCccEEEE--------CCEECCCCCChhhhccceEEEEecCC
Q 016804 117 GEAVGIIGPSGTGKSTILKIIAGLL---APDKGEVYI--------RGRKRAGLISDEEISGLRIGLVFQSA 176 (382)
Q Consensus 117 Ge~vaLiGpNGaGKSTLLklI~Gl~---~p~sG~I~i--------~G~~i~~~~~~~~~~~~~Ig~V~Q~~ 176 (382)
+.+++|+|||||||||++++|++.+ .+++|++.. .|.++.......+. ..++++++|++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~ 74 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPL-ASHLDVRFVST 74 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHH-HHTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHH-HHhCceeeecc
Confidence 5689999999999999999999876 788999887 66653210000111 12488898864
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=2.6e-06 Score=74.63 Aligned_cols=39 Identities=28% Similarity=0.384 Sum_probs=32.3
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc--EEEECCEE
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG--EVYIRGRK 154 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG--~I~i~G~~ 154 (382)
.+|++++|+|++||||||++++|++.+++ .| .|.+++..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~ 43 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDN 43 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChH
Confidence 47999999999999999999999998766 56 66666543
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=97.85 E-value=1e-05 Score=81.58 Aligned_cols=166 Identities=14% Similarity=0.076 Sum_probs=87.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC------------CCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHH
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLLA------------PDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRE 186 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~~------------p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~e 186 (382)
.++|+|+||+|||||++.|+|... +.+|.+.++|+++.-+.... .+.+.++.+|....|..++..+
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G--~~~~~~~~~~~~e~~~~~~~~~ 259 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAG--LRRKSRVEPRTVEKYSNYRVVD 259 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSC--C-----------CCSCCHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCC--CccccccchhhHHHHHHHHHHH
Confidence 799999999999999999999864 67899999998643211111 1112445556666666555566
Q ss_pred HHHhhH------hhcCCCCHHHHHHHHHHHHHHcCCcc-----cccCCCC-CCChHHHHHHHHHHHHhcCCCCCCCCCcE
Q 016804 187 NVGFLL------YENSKMRDEQISELVKENLAAVGLKG-----VEDRLPS-ELSGGMKKRVALARSIIFDNTKESVEPEV 254 (382)
Q Consensus 187 ni~~~~------~~~~~~~~~~~~~~v~~~L~~~gL~~-----~~~~~~~-~LSGGqrQRVaIArAL~~~~~~~a~~P~i 254 (382)
++...- ....+.... ...+.+.++..+..- ..|.... +-+.-+ -.-.+++.+..- ...++
T Consensus 260 ~i~~ad~vllv~d~~~~~~~~--~~~i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~ 331 (439)
T 1mky_A 260 SIEKADVVVIVLDATQGITRQ--DQRMAGLMERRGRASVVVFNKWDLVVHREKRYDE-FTKLFREKLYFI-----DYSPL 331 (439)
T ss_dssp HHHHCSEEEEEEETTTCCCHH--HHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHH-HHHHHHHHCGGG-----TTSCE
T ss_pred HHhhCCEEEEEEeCCCCCCHH--HHHHHHHHHHcCCCEEEEEECccCCCchhhHHHH-HHHHHHHHhccC-----CCCcE
Confidence 654421 011122222 234555666655421 1121110 111111 111444544321 12444
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHh
Q 016804 255 LLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA 309 (382)
Q Consensus 255 LLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~ 309 (382)
+ ++|++.-....++++.+.+...+. +.-+.|+.++.+..-
T Consensus 332 ~----~~SA~~g~gv~~l~~~i~~~~~~~-----------~~~i~t~~ln~~l~~ 371 (439)
T 1mky_A 332 I----FTSADKGWNIDRMIDAMNLAYASY-----------TTKVPSSAINSALQK 371 (439)
T ss_dssp E----ECBTTTTBSHHHHHHHHHHHHHHH-----------TCCCCHHHHHHHHHH
T ss_pred E----EEECCCCCCHHHHHHHHHHHHHhh-----------cccCCHHHHHHHHHH
Confidence 4 599999999999998888876542 234577777766543
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=7.8e-06 Score=82.79 Aligned_cols=42 Identities=17% Similarity=0.260 Sum_probs=34.6
Q ss_pred CCcEEEEeCCCCCCCH-HHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccC
Q 016804 251 EPEVLLYDEPTAGLDP-IASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQ 302 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~-~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHd 302 (382)
+|++|++||+..-.+. ..+..++..+..+.+.+ ..+|++||+
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~----------~~iIitt~~ 236 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSG----------KQIVICSDR 236 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTT----------CEEEEEESS
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCC----------CeEEEEECC
Confidence 4999999999877664 67888999999887765 478889997
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.83 E-value=9.9e-07 Score=89.52 Aligned_cols=59 Identities=15% Similarity=0.162 Sum_probs=50.8
Q ss_pred EEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECC
Q 016804 94 CRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRA 156 (382)
Q Consensus 94 ~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~ 156 (382)
.+++++.|+... ++++|+ +|++++++|+|||||||++..|++.+.+..|+|.+.+.|..
T Consensus 79 ~~~L~~~~~~~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~ 137 (425)
T 2ffh_A 79 YEALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ 137 (425)
T ss_dssp HHHHHHHTTSSC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSS
T ss_pred HHHHHHHhCCCc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecccc
Confidence 456777787654 788888 89999999999999999999999999999999999887653
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=97.81 E-value=2e-06 Score=86.59 Aligned_cols=51 Identities=22% Similarity=0.276 Sum_probs=46.6
Q ss_pred eEEEEeEEEEeCC-eeeeE--------------eeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 91 LIDCRNVYKSFGE-KHILR--------------GVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 91 ~I~~~nvs~~yg~-~~iL~--------------~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
-+.++||++.|+. +..|+ |+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus 133 ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 3778999999975 56899 899999999999999999999999999999875
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.81 E-value=3.5e-06 Score=82.95 Aligned_cols=42 Identities=24% Similarity=0.402 Sum_probs=36.2
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECC
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRA 156 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~ 156 (382)
+++.+++|+|++|||||||++.|+|.+.++.|+|.+.+.+..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~ 113 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS 113 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence 357899999999999999999999999888888888776543
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=1.1e-05 Score=69.76 Aligned_cols=30 Identities=33% Similarity=0.519 Sum_probs=24.3
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHHc
Q 016804 109 GVSFKIRHGEAVGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 109 ~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~G 139 (382)
+.++++.+| +.+|+|||||||||++.+|.-
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 344555555 899999999999999999873
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.78 E-value=7.6e-05 Score=73.02 Aligned_cols=28 Identities=18% Similarity=0.165 Sum_probs=25.8
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcC
Q 016804 113 KIRHGEAVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 113 ~i~~Ge~vaLiGpNGaGKSTLLklI~Gl 140 (382)
-+++|+++.|.||+|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999998874
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.78 E-value=7.8e-06 Score=75.64 Aligned_cols=44 Identities=20% Similarity=0.348 Sum_probs=32.4
Q ss_pred eEeeeEEEe---CCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEEC
Q 016804 107 LRGVSFKIR---HGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151 (382)
Q Consensus 107 L~~vsl~i~---~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~ 151 (382)
|.++||.+. +|.+++|.||+||||||+++.|+..+.+ .+.+...
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 566666665 8999999999999999999999999887 6666543
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.75 E-value=3.1e-05 Score=72.95 Aligned_cols=26 Identities=23% Similarity=0.483 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
++..+.|.||+|+|||||++.+++..
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 46678999999999999999999843
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=6.3e-06 Score=74.42 Aligned_cols=43 Identities=23% Similarity=0.358 Sum_probs=37.3
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc--EEEECCEE
Q 016804 112 FKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG--EVYIRGRK 154 (382)
Q Consensus 112 l~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG--~I~i~G~~ 154 (382)
+.+++|.++.|+|++||||||+.+.|++.+.|+.| .+.++|..
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 34678999999999999999999999999988888 88887643
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=97.67 E-value=9.4e-07 Score=85.37 Aligned_cols=60 Identities=20% Similarity=0.166 Sum_probs=49.7
Q ss_pred EEeEEEEeCCeeeeEe-eeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECC
Q 016804 94 CRNVYKSFGEKHILRG-VSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRA 156 (382)
Q Consensus 94 ~~nvs~~yg~~~iL~~-vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~ 156 (382)
.+++.+.|++.. ++ ++|+.+ |++++++|+||+||||++..|++.+.+..|+|.+.+.|..
T Consensus 77 ~~~l~~~~~~~~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 77 YDELSNLFGGDK--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY 137 (297)
T ss_dssp HHHHHHHTTCSC--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred HHHHHHHhcccc--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 456666776543 56 888876 9999999999999999999999999988889998876643
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=97.66 E-value=3.3e-05 Score=68.07 Aligned_cols=34 Identities=24% Similarity=0.526 Sum_probs=20.6
Q ss_pred eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHc
Q 016804 105 HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 105 ~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~G 139 (382)
.++++++++.++. .++++|++|+|||||++.+.+
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 4788999998887 678999999999999999998
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=7.5e-06 Score=72.86 Aligned_cols=55 Identities=22% Similarity=0.379 Sum_probs=38.0
Q ss_pred EEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC--------CCCCccEEEECCE
Q 016804 98 YKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--------LAPDKGEVYIRGR 153 (382)
Q Consensus 98 s~~yg~-~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl--------~~p~sG~I~i~G~ 153 (382)
+++|++ ..+++++||..+++. ++|+|++|+|||||++.+.+- ..++.+.+.++|.
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~ 69 (198)
T 1f6b_A 6 DWIYSGFSSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGM 69 (198)
T ss_dssp -------CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTE
T ss_pred HHHHHHHHHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCE
Confidence 345654 468899999888875 689999999999999999872 2234566666653
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.65 E-value=2.6e-06 Score=84.17 Aligned_cols=57 Identities=19% Similarity=0.254 Sum_probs=39.3
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGR 153 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~ 153 (382)
.+.++|+++.|+.+.++++++|+| +|+|+||+|||||++.|.|...+..|.+...+.
T Consensus 17 ~v~~~~l~~~~~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~ 73 (361)
T 2qag_A 17 YVGFANLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAAE 73 (361)
T ss_dssp ----CCHHHHHHTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-----------
T ss_pred eEEeccchHHhCCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCc
Confidence 488999999998888999999987 999999999999999999987766665544443
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=97.64 E-value=3.9e-05 Score=66.64 Aligned_cols=28 Identities=43% Similarity=0.595 Sum_probs=23.9
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCC
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
++|..++|+|++|+|||||++.++|...
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~ 29 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREA 29 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3678899999999999999999998753
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=5.6e-05 Score=68.49 Aligned_cols=29 Identities=34% Similarity=0.574 Sum_probs=23.7
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHH
Q 016804 109 GVSFKIRHGEAVGIIGPSGTGKSTILKIIA 138 (382)
Q Consensus 109 ~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~ 138 (382)
+.++++.+| +.+|+|||||||||++.+|.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 445556554 99999999999999999885
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00028 Score=68.21 Aligned_cols=28 Identities=18% Similarity=0.272 Sum_probs=25.6
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcC
Q 016804 113 KIRHGEAVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 113 ~i~~Ge~vaLiGpNGaGKSTLLklI~Gl 140 (382)
-+++|+++.|.||+|||||||+..++.-
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 5899999999999999999999988764
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.48 E-value=4.6e-05 Score=67.32 Aligned_cols=32 Identities=31% Similarity=0.436 Sum_probs=26.8
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC
Q 016804 109 GVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 109 ~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl 140 (382)
++|++..+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 67889999999999999999999999999875
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.47 E-value=2.8e-05 Score=68.36 Aligned_cols=37 Identities=35% Similarity=0.416 Sum_probs=31.7
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEE
Q 016804 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149 (382)
Q Consensus 113 ~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~ 149 (382)
...+|.++.|+|++||||||+.+.|+..+.+..|.+.
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~ 45 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVE 45 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 3457999999999999999999999998877666653
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00013 Score=62.38 Aligned_cols=24 Identities=33% Similarity=0.580 Sum_probs=21.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
.++|+|++|+|||||++.++|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 589999999999999999999754
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.45 E-value=5.1e-05 Score=67.46 Aligned_cols=22 Identities=36% Similarity=0.687 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
+++|+|+|||||||+.++|+++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFREL 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHHHC
Confidence 6899999999999999999993
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.44 E-value=8.3e-05 Score=64.36 Aligned_cols=22 Identities=36% Similarity=0.676 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|++|+|||||++.++|-
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.38 E-value=7.1e-05 Score=67.06 Aligned_cols=30 Identities=27% Similarity=0.480 Sum_probs=26.3
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCC
Q 016804 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 113 ~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
...+|.+++|+||||||||||.+.|+..++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 356899999999999999999999998764
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00016 Score=71.30 Aligned_cols=44 Identities=25% Similarity=0.403 Sum_probs=33.2
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHH
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIA 138 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~ 138 (382)
+.++.|+.. +...+++..+++.+| +.+|+|||||||||+|..|.
T Consensus 3 M~l~~L~l~--nFr~~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 3 MILKEIRMN--NFKSHVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEEEE--EETTEEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred cEEeEEEEE--ccccccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 455666553 223456778888775 89999999999999999986
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00036 Score=61.77 Aligned_cols=25 Identities=36% Similarity=0.485 Sum_probs=22.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCC
Q 016804 118 EAVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 118 e~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
..+.|.||+|+|||||++.|+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6788999999999999999997543
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.33 E-value=9.2e-05 Score=74.42 Aligned_cols=41 Identities=22% Similarity=0.504 Sum_probs=34.1
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcC-----------CCCCccEEEECCE
Q 016804 113 KIRHGEAVGIIGPSGTGKSTILKIIAGL-----------LAPDKGEVYIRGR 153 (382)
Q Consensus 113 ~i~~Ge~vaLiGpNGaGKSTLLklI~Gl-----------~~p~sG~I~i~G~ 153 (382)
.+..|..++|+|+||+|||||++.|+|. ..|..|.|.+.|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 4567888999999999999999999998 6788898887663
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00024 Score=70.22 Aligned_cols=27 Identities=30% Similarity=0.518 Sum_probs=24.6
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcC
Q 016804 114 IRHGEAVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 114 i~~Ge~vaLiGpNGaGKSTLLklI~Gl 140 (382)
+++|+++.|.||+|+|||||...++.-
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 889999999999999999999887754
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00065 Score=64.91 Aligned_cols=33 Identities=9% Similarity=0.032 Sum_probs=25.7
Q ss_pred CCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHHcC
Q 016804 251 EPEVLLYDEPTA-GLDPIASTVVEDLIRSVHKKG 283 (382)
Q Consensus 251 ~P~iLLLDEPta-gLD~~~~~~l~~lL~~l~~~g 283 (382)
++.+|++||+-. ..+...+..+...+..+.+.+
T Consensus 98 ~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~ 131 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLE 131 (324)
T ss_dssp TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCC
Confidence 499999999865 234477888999998887765
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0011 Score=66.83 Aligned_cols=37 Identities=19% Similarity=0.078 Sum_probs=30.3
Q ss_pred eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 105 HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 105 ~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
..|+.+.--+++|+++.|.|++|+|||||+.-++.-.
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3456555458999999999999999999998887644
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00016 Score=63.12 Aligned_cols=26 Identities=31% Similarity=0.549 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLLAPD 144 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~~p~ 144 (382)
.++|+|++|+|||||++.++|...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 47899999999999999999975443
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00012 Score=65.23 Aligned_cols=38 Identities=26% Similarity=0.265 Sum_probs=29.7
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCCC---ccEEEECCEE
Q 016804 117 GEAVGIIGPSGTGKSTILKIIAGLLAPD---KGEVYIRGRK 154 (382)
Q Consensus 117 Ge~vaLiGpNGaGKSTLLklI~Gl~~p~---sG~I~i~G~~ 154 (382)
-.+++|+|+||||||||++.|++.+++. -|.|..++.+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 3579999999999999999999876543 3777776543
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00017 Score=64.08 Aligned_cols=33 Identities=33% Similarity=0.532 Sum_probs=26.8
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCE
Q 016804 117 GEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGR 153 (382)
Q Consensus 117 Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~ 153 (382)
..+++|+|++|||||||.+.|++.+ |.+.+++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d 50 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGD 50 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCC
Confidence 4689999999999999999999865 45555543
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00019 Score=62.58 Aligned_cols=25 Identities=40% Similarity=0.593 Sum_probs=22.4
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHc
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~G 139 (382)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999999984
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00027 Score=64.81 Aligned_cols=36 Identities=39% Similarity=0.553 Sum_probs=28.5
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHc---CCCCCccEEE
Q 016804 114 IRHGEAVGIIGPSGTGKSTILKIIAG---LLAPDKGEVY 149 (382)
Q Consensus 114 i~~Ge~vaLiGpNGaGKSTLLklI~G---l~~p~sG~I~ 149 (382)
-.+|.+++|+|++||||||+.++|++ +..++.|.+.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~ 51 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMY 51 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCee
Confidence 46789999999999999999999996 3345555554
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00022 Score=66.31 Aligned_cols=40 Identities=30% Similarity=0.341 Sum_probs=33.1
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEE
Q 016804 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154 (382)
Q Consensus 113 ~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~ 154 (382)
....+.++.|+|++||||||+.+.|+..+. .|.+.+++..
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~ 67 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDS 67 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHH
Confidence 466788999999999999999999998764 3567778754
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=6e-05 Score=74.82 Aligned_cols=37 Identities=27% Similarity=0.473 Sum_probs=33.1
Q ss_pred eeeEeeeEEEeCCcE--EEEEcCCCccHHHHHHHHHcCC
Q 016804 105 HILRGVSFKIRHGEA--VGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 105 ~iL~~vsl~i~~Ge~--vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.+++.+++.+++|+. ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 467788888999999 9999999999999999999864
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00068 Score=63.17 Aligned_cols=28 Identities=32% Similarity=0.503 Sum_probs=23.9
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 114 IRHGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 114 i~~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+..+.-+.|.||+|+|||||++.++...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3456679999999999999999998754
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00034 Score=59.75 Aligned_cols=23 Identities=26% Similarity=0.231 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00013 Score=68.08 Aligned_cols=32 Identities=38% Similarity=0.573 Sum_probs=26.7
Q ss_pred CcEEEEEcCCCccHHHHHHHHH---cCCCCCccEE
Q 016804 117 GEAVGIIGPSGTGKSTILKIIA---GLLAPDKGEV 148 (382)
Q Consensus 117 Ge~vaLiGpNGaGKSTLLklI~---Gl~~p~sG~I 148 (382)
.-+++|.||+||||||+.+.|+ |+...+.|.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~ 43 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAM 43 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcH
Confidence 4589999999999999999999 6655566665
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00023 Score=65.70 Aligned_cols=34 Identities=41% Similarity=0.626 Sum_probs=24.6
Q ss_pred eEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC
Q 016804 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 107 L~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
++++++.+++| +.|+||+|+|||||++.|++...
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 44555555666 88999999999999999998753
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00046 Score=59.62 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCC
Q 016804 117 GEAVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 117 Ge~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
|.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998664
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00015 Score=64.63 Aligned_cols=30 Identities=27% Similarity=0.492 Sum_probs=24.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCccEE
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLLAPDKGEV 148 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I 148 (382)
+++|.|++||||||+++.|+..+.+....|
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v 31 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSV 31 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 689999999999999999998876443333
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00047 Score=60.49 Aligned_cols=23 Identities=43% Similarity=0.585 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+++|+|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999843
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00057 Score=59.30 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 117 GEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 117 Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
|.++.|.|++||||||+.+.|+-.+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998643
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00028 Score=69.60 Aligned_cols=47 Identities=26% Similarity=0.331 Sum_probs=39.1
Q ss_pred CCcEEEEeCCCCCCC---HHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHH
Q 016804 251 EPEVLLYDEPTAGLD---PIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIR 307 (382)
Q Consensus 251 ~P~iLLLDEPtagLD---~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~ 307 (382)
+|.++++||-=.-++ +.....+.+.+++.++.| ..++++||+++.+.
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g----------~~~~~~tQ~~~d~~ 311 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYN----------GSLIVISQNVIDFL 311 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGT----------CEEEEEESCGGGGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhC----------eEEEEEcCCHHHhh
Confidence 589999999988884 677788888888887776 58999999987654
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00058 Score=57.82 Aligned_cols=19 Identities=37% Similarity=0.621 Sum_probs=18.2
Q ss_pred EEEEEcCCCccHHHHHHHH
Q 016804 119 AVGIIGPSGTGKSTILKII 137 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI 137 (382)
+++|+||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0005 Score=60.44 Aligned_cols=31 Identities=29% Similarity=0.429 Sum_probs=26.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC
Q 016804 117 GEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG 152 (382)
Q Consensus 117 Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G 152 (382)
..+++|+|++||||||+.+.|+.. |-..++.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~ 38 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDL 38 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEcc
Confidence 457999999999999999999985 6666654
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00061 Score=61.22 Aligned_cols=32 Identities=34% Similarity=0.415 Sum_probs=25.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG 152 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G 152 (382)
.+-+++|.|++||||||+.+.|+.+ |-..++.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~l-----g~~~id~ 34 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFADL-----GINVIDA 34 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHT-----TCEEEEH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHc-----CCEEEEc
Confidence 3568999999999999999999983 5445543
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0013 Score=57.42 Aligned_cols=35 Identities=31% Similarity=0.609 Sum_probs=25.9
Q ss_pred EEEEEcCCCccHHHHHHHHHc-C----CCCCcc----EEEECCE
Q 016804 119 AVGIIGPSGTGKSTILKIIAG-L----LAPDKG----EVYIRGR 153 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~G-l----~~p~sG----~I~i~G~ 153 (382)
.++|+|++|+|||||++.+.+ - ..|+.| .+.++|.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~ 65 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQ 65 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCE
Confidence 488999999999999975554 3 456666 5566664
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00071 Score=58.97 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=23.0
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcC
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++.++.|+|++||||||+.+.|+..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45778999999999999999999864
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.00097 Score=58.01 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.+..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999998543
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0011 Score=58.44 Aligned_cols=26 Identities=23% Similarity=0.241 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+|-+++|.|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999999876
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0014 Score=65.10 Aligned_cols=36 Identities=31% Similarity=0.564 Sum_probs=30.4
Q ss_pred CcEEEEEcCCCccHHHHHHHHHc-----------CCCCCccEEEECC
Q 016804 117 GEAVGIIGPSGTGKSTILKIIAG-----------LLAPDKGEVYIRG 152 (382)
Q Consensus 117 Ge~vaLiGpNGaGKSTLLklI~G-----------l~~p~sG~I~i~G 152 (382)
|-.++|||.+|+|||||++.|+| -..|+.|.+.+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 45689999999999999999999 3467788888765
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=96.63 E-value=0.00093 Score=58.09 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=22.4
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHc
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~G 139 (382)
.++..+.|+|++||||||+.+.|+-
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 4577899999999999999999983
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.00086 Score=62.58 Aligned_cols=23 Identities=30% Similarity=0.303 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+++|+||||||||||.+.|++-+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998754
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.61 E-value=0.00096 Score=57.84 Aligned_cols=23 Identities=39% Similarity=0.524 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.+.|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998654
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.00073 Score=64.39 Aligned_cols=30 Identities=33% Similarity=0.509 Sum_probs=26.7
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 112 FKIRHGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 112 l~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+.+.++..+.|.||+|+|||||+++|++..
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 346788899999999999999999999875
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0011 Score=56.93 Aligned_cols=31 Identities=29% Similarity=0.332 Sum_probs=24.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCCCCccEEEEC
Q 016804 118 EAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151 (382)
Q Consensus 118 e~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~ 151 (382)
.++.|.|++||||||+.+.|+.. .-|-..++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~---~~~~~~i~ 33 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAK---NPGFYNIN 33 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH---STTEEEEC
T ss_pred eEEEEecCCCCCHHHHHHHHHhh---cCCcEEec
Confidence 36899999999999999999871 12555555
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0019 Score=62.97 Aligned_cols=49 Identities=33% Similarity=0.343 Sum_probs=38.4
Q ss_pred CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHc----CCCCCccEEEECC
Q 016804 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAG----LLAPDKGEVYIRG 152 (382)
Q Consensus 103 ~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~G----l~~p~sG~I~i~G 152 (382)
....+++..+++ .|.-+.|.|+||+|||||...+.+ |+..|...|...+
T Consensus 131 ~~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~dD~~~i~~~~ 183 (314)
T 1ko7_A 131 RTTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKRGHRLVADDNVEIREIS 183 (314)
T ss_dssp EEEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHTTCEEEESSEEEEEESS
T ss_pred cceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhcCCceecCCeEEEEEcC
Confidence 356889999988 889999999999999999999987 4444545554433
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.001 Score=59.95 Aligned_cols=22 Identities=55% Similarity=0.729 Sum_probs=19.1
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q 016804 120 VGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+.|+||||||||||++.|..-.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999987543
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0012 Score=58.12 Aligned_cols=27 Identities=22% Similarity=0.452 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
+|-+++|.|+.||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999987554
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0012 Score=57.53 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++.+++|+|+.||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 367899999999999999999998543
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0013 Score=58.29 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=23.3
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcC
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.+|-+++|.|+.||||||+.+.|+-.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999853
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0013 Score=57.12 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=21.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|++|+|||||++.+.+-.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~~ 40 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASED 40 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999863
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0012 Score=62.91 Aligned_cols=36 Identities=19% Similarity=0.211 Sum_probs=28.6
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG 152 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G 152 (382)
..|.++.|.|||||||||+.+.|+.-++ .|.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 3567899999999999999999986543 35677765
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0014 Score=56.79 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcC
Q 016804 117 GEAVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 117 Ge~vaLiGpNGaGKSTLLklI~Gl 140 (382)
+.+++|+|++||||||+.+.|+-.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999753
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0015 Score=57.96 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=23.6
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcC
Q 016804 114 IRHGEAVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 114 i~~Ge~vaLiGpNGaGKSTLLklI~Gl 140 (382)
..+|-+++|.|+.||||||+.+.|+-.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 357889999999999999999999854
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0014 Score=56.73 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
++.|.|++||||||+.+.|+--+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998754
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0014 Score=61.32 Aligned_cols=45 Identities=11% Similarity=0.205 Sum_probs=36.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 260 PTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 260 PtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
|||+++.....++++.+.++..+.. .+..+..|..+.+.+.++++
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~~~---------~~~~~~~~~~~~~e~~~~~l 188 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEGKV---------TTNPIIPRYDEDIEREIKHI 188 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHTCC---------CCCCCCCCCCHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhccc---------cCCCCCcCCCHHHHHHHHHH
Confidence 9999999999999999988876531 24466788889999999987
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0016 Score=57.45 Aligned_cols=23 Identities=43% Similarity=0.647 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998754
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0013 Score=61.89 Aligned_cols=31 Identities=26% Similarity=0.484 Sum_probs=26.6
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCCCCccEE
Q 016804 118 EAVGIIGPSGTGKSTILKIIAGLLAPDKGEV 148 (382)
Q Consensus 118 e~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I 148 (382)
..+.|.||+|+|||||.++|++...+..|.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 5799999999999999999999887665533
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0015 Score=56.48 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=18.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
++.++.|.|++||||||+.+.|+-.+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 56789999999999999999998543
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0021 Score=56.18 Aligned_cols=28 Identities=29% Similarity=0.410 Sum_probs=24.1
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 114 IRHGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 114 i~~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+..+-+++|+|+.||||||+.+.|+..+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467799999999999999999998644
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0022 Score=55.61 Aligned_cols=25 Identities=24% Similarity=0.501 Sum_probs=22.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCC
Q 016804 118 EAVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 118 e~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
=.++|+|++|+|||||++.+.+-..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~~ 73 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDSV 73 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3689999999999999999998653
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0022 Score=56.99 Aligned_cols=26 Identities=15% Similarity=0.276 Sum_probs=22.8
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCCC
Q 016804 118 EAVGIIGPSGTGKSTILKIIAGLLAP 143 (382)
Q Consensus 118 e~vaLiGpNGaGKSTLLklI~Gl~~p 143 (382)
.+++|+|++|||||||+..|++.++.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 47899999999999999999987653
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0015 Score=59.73 Aligned_cols=115 Identities=18% Similarity=0.088 Sum_probs=63.2
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhHhh
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYE 194 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~ 194 (382)
.+|+.+.++||+||||||++.++..-.....| ....++++++.|......++.+++......
T Consensus 74 ~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~------------------~~~~~~~l~~~p~~~la~q~~~~~~~~~~~ 135 (235)
T 3llm_A 74 SQNSVVIIRGATGCGKTTQVPQFILDDFIQND------------------RAAECNIVVTQPRRISAVSVAERVAFERGE 135 (235)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHHHHHHHHHTT------------------CGGGCEEEEEESSHHHHHHHHHHHHHTTTC
T ss_pred hcCCEEEEEeCCCCCcHHhHHHHHhcchhhcC------------------CCCceEEEEeccchHHHHHHHHHHHHHhcc
Confidence 46899999999999999998876432111101 011356788877655555667776542210
Q ss_pred cCCCCHHHHHHHHHHHHHHcCCcc-cccCC------CCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCC-CCCH
Q 016804 195 NSKMRDEQISELVKENLAAVGLKG-VEDRL------PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA-GLDP 266 (382)
Q Consensus 195 ~~~~~~~~~~~~v~~~L~~~gL~~-~~~~~------~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPta-gLD~ 266 (382)
. .. ..+|... ..++. +--.+.|...+... ..+. +-+++++||.-. ++|.
T Consensus 136 ~--~~------------~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~--~~l~-------~~~~lVlDEah~~~~~~ 192 (235)
T 3llm_A 136 E--PG------------KSCGYSVRFESILPRPHASIMFCTVGVLLRKLE--AGIR-------GISHVIVDEIHERDINT 192 (235)
T ss_dssp C--TT------------SSEEEEETTEEECCCSSSEEEEEEHHHHHHHHH--HCCT-------TCCEEEECCTTSCCHHH
T ss_pred c--cC------------ceEEEeechhhccCCCCCeEEEECHHHHHHHHH--hhhc-------CCcEEEEECCccCCcch
Confidence 0 00 0011110 00111 11134566666533 2343 699999999976 5766
Q ss_pred HHHH
Q 016804 267 IAST 270 (382)
Q Consensus 267 ~~~~ 270 (382)
....
T Consensus 193 ~~~~ 196 (235)
T 3llm_A 193 DFLL 196 (235)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6553
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0023 Score=53.61 Aligned_cols=23 Identities=17% Similarity=0.374 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998753
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0026 Score=55.17 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+++|.|+.||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998644
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0025 Score=53.79 Aligned_cols=23 Identities=30% Similarity=0.603 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 47899999999999999999864
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0026 Score=57.63 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=22.3
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++.++.|+|+.||||||+.+.|+--+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998543
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0029 Score=56.89 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+|-++.|+|+.||||||+.+.|+-.+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999998643
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0026 Score=56.71 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|.||.||||||+.+.|+.-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999653
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0026 Score=53.29 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999974
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0023 Score=53.10 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++++|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999998753
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0081 Score=60.87 Aligned_cols=34 Identities=18% Similarity=0.161 Sum_probs=27.4
Q ss_pred eeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHc
Q 016804 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 106 iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~G 139 (382)
-|+.+.--+++|+++.|.|++|+|||||+--++.
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 3444443489999999999999999999877765
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0021 Score=53.93 Aligned_cols=24 Identities=33% Similarity=0.637 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
.++|+|+.|+|||||++.+.|...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCccc
Confidence 478999999999999999987543
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0026 Score=52.96 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999988643
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0024 Score=54.64 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.5
Q ss_pred cEEEEEcCCCccHHHHHHHHHcC
Q 016804 118 EAVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 118 e~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.+++|.|++||||||+.+.|+-.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999864
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0026 Score=52.94 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++++|+.|+|||||++.+.+-.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998753
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=96.11 E-value=0.027 Score=57.43 Aligned_cols=27 Identities=30% Similarity=0.255 Sum_probs=23.9
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHc
Q 016804 113 KIRHGEAVGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 113 ~i~~Ge~vaLiGpNGaGKSTLLklI~G 139 (382)
-+++|+++.|.|++|+|||||+.-++-
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 489999999999999999999776654
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0029 Score=53.22 Aligned_cols=24 Identities=42% Similarity=0.635 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
.++|+|+.|+|||||++.+.+...
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~~ 27 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQG 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHHhccC
Confidence 378999999999999999987543
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0032 Score=54.02 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcC
Q 016804 117 GEAVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 117 Ge~vaLiGpNGaGKSTLLklI~Gl 140 (382)
-++++|.|+.||||||+.+.|+-.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999999863
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0028 Score=55.96 Aligned_cols=22 Identities=45% Similarity=0.709 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|++|+|||||++.+.|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4899999999999999999764
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0029 Score=54.75 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcC
Q 016804 117 GEAVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 117 Ge~vaLiGpNGaGKSTLLklI~Gl 140 (382)
..+++|.|+.||||||+.+.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999853
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.003 Score=52.56 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++++|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999754
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0032 Score=53.67 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|.|+.||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999864
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0028 Score=53.09 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++++|+.|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37899999999999999998865
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0035 Score=55.44 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.+-+++|+|+.||||||+.+.|+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3557999999999999999999864
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0026 Score=57.33 Aligned_cols=26 Identities=27% Similarity=0.267 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.+-++.|+||+||||||+.+.|+--+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45678999999999999999998543
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0029 Score=52.92 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++++|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998754
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0031 Score=55.69 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 117 GEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 117 Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
..+++|.|+.||||||+.+.|+--+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578999999999999999998543
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0032 Score=56.27 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+||.||||||+.+.|+.-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999753
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0029 Score=53.13 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++++|+.|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998753
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0028 Score=53.15 Aligned_cols=23 Identities=35% Similarity=0.410 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 37899999999999999998754
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.003 Score=53.58 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999988754
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0031 Score=52.74 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999864
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.004 Score=52.79 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl 140 (382)
+.-.++|+|+.|+|||||++.+.+-
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4557899999999999999999874
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0027 Score=53.77 Aligned_cols=23 Identities=43% Similarity=0.504 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0033 Score=59.53 Aligned_cols=23 Identities=26% Similarity=0.665 Sum_probs=21.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|++|||||||++.++|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0031 Score=53.45 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999998653
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0033 Score=54.04 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58999999999999999999864
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0033 Score=54.40 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.9
Q ss_pred cEEEEEcCCCccHHHHHHHHHcC
Q 016804 118 EAVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 118 e~vaLiGpNGaGKSTLLklI~Gl 140 (382)
-.++|+|+.|+|||||++.+.+-
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999975
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.003 Score=54.87 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=20.4
Q ss_pred cEEEEEcCCCccHHHHHHHHHcC
Q 016804 118 EAVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 118 e~vaLiGpNGaGKSTLLklI~Gl 140 (382)
-+++|+|+.||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999764
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0031 Score=53.46 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999876
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0033 Score=53.90 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 37899999999999999999864
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0058 Score=56.08 Aligned_cols=39 Identities=33% Similarity=0.354 Sum_probs=31.1
Q ss_pred CCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 102 GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 102 g~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.....+++.-+++ .|..+.|+||+|||||||...|+.-.
T Consensus 20 a~~~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 20 AERRSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp -CCCCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CcceeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3455677777766 68889999999999999999998643
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0045 Score=55.10 Aligned_cols=27 Identities=15% Similarity=0.316 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
.+..+.|.||+|+|||||++.++....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 578899999999999999999986543
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0077 Score=70.24 Aligned_cols=29 Identities=28% Similarity=0.466 Sum_probs=26.5
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCCC
Q 016804 114 IRHGEAVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 114 i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
+++|+++.|.||+|+|||||+..++....
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa 757 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ 757 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHH
Confidence 89999999999999999999999987543
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0037 Score=52.27 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0039 Score=57.61 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=21.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCC
Q 016804 118 EAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 118 e~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
-+++|.|++||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 369999999999999999998743
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0036 Score=53.77 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999999864
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0038 Score=53.44 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999743
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0047 Score=57.76 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=21.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|||||||++.|.|-.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999974
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0038 Score=53.40 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998753
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.004 Score=53.50 Aligned_cols=25 Identities=32% Similarity=0.372 Sum_probs=22.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLLAP 143 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~~p 143 (382)
.++|+|+.|+|||||++.+.|-...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 4789999999999999999987653
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0036 Score=62.08 Aligned_cols=21 Identities=38% Similarity=0.678 Sum_probs=19.9
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q 016804 120 VGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~Gl 140 (382)
++|+|++|+|||||++.|++.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999985
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0024 Score=54.65 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=20.2
Q ss_pred CcEEEEEcCCCccHHHHHHHHHc
Q 016804 117 GEAVGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 117 Ge~vaLiGpNGaGKSTLLklI~G 139 (382)
.-.++|+|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999874
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0039 Score=54.06 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37999999999999999998853
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0044 Score=55.72 Aligned_cols=24 Identities=38% Similarity=0.614 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcC
Q 016804 117 GEAVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 117 Ge~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.-+++|.|+.||||||+.+.|+-.
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999864
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=95.86 E-value=0.004 Score=52.31 Aligned_cols=22 Identities=36% Similarity=0.442 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999763
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0044 Score=52.56 Aligned_cols=23 Identities=17% Similarity=0.367 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 47899999999999999998753
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0043 Score=51.88 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=19.1
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 016804 119 AVGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~G 139 (382)
.++++|+.|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 378999999999999999976
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0048 Score=57.46 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl 140 (382)
++.++.|+|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999864
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.004 Score=52.62 Aligned_cols=22 Identities=14% Similarity=0.259 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0044 Score=52.76 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 38999999999999999998743
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0045 Score=52.57 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 48999999999999999998754
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0047 Score=52.20 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998754
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0047 Score=53.29 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++++|+.|+|||||++.+.+-.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48899999999999999998753
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0051 Score=58.98 Aligned_cols=23 Identities=39% Similarity=0.619 Sum_probs=21.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+++|+|++|+|||||++.|.|--
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 59999999999999999999863
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0054 Score=55.63 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
++.|.|++||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999997543
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0051 Score=52.31 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0049 Score=58.33 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCccHHHHHHHHHc
Q 016804 117 GEAVGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 117 Ge~vaLiGpNGaGKSTLLklI~G 139 (382)
.-+++|.|++||||||+.+.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999984
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0056 Score=58.64 Aligned_cols=23 Identities=39% Similarity=0.576 Sum_probs=21.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+++|+|+.|+|||||++.|.|--
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 78999999999999999999863
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0049 Score=52.74 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998653
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0067 Score=51.45 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.+..+.|.||.|+|||||++.++..+
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 45678899999999999999998764
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0053 Score=53.43 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37999999999999999998653
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0039 Score=55.36 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=21.6
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCC
Q 016804 118 EAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 118 e~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
-.++|+|+.|+|||||++.|.|-.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999864
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.006 Score=56.29 Aligned_cols=25 Identities=20% Similarity=0.191 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl 140 (382)
++-+++|.||.||||||+.+.|+--
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5568999999999999999999743
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.61 E-value=0.006 Score=54.04 Aligned_cols=23 Identities=26% Similarity=0.550 Sum_probs=21.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999865
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0057 Score=52.81 Aligned_cols=23 Identities=39% Similarity=0.443 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 38999999999999999999754
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0056 Score=53.46 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998754
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0032 Score=60.13 Aligned_cols=26 Identities=23% Similarity=0.478 Sum_probs=19.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
++-++||.||+||||||+.+.|+..+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998743
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0012 Score=58.20 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=21.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
.+.|.||+|+|||||++.++..+.
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 789999999999999999987543
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0058 Score=52.88 Aligned_cols=23 Identities=30% Similarity=0.290 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999998754
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.006 Score=52.16 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3689999999999999999864
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0055 Score=53.06 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5899999999999999999873
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0061 Score=51.93 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++++|+.|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999854
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0048 Score=57.77 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|++|+|||||++.|.|-.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38899999999999999988754
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0056 Score=52.84 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|++|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0062 Score=56.04 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=21.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|||||||++.|.|-.
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.006 Score=52.43 Aligned_cols=26 Identities=31% Similarity=0.364 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+.=.++++|+.|+|||||++.+.+-.
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34468999999999999999998743
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0066 Score=54.36 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|.|+.||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999863
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0059 Score=53.17 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37999999999999999998754
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.50 E-value=0.007 Score=52.87 Aligned_cols=23 Identities=35% Similarity=0.326 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0072 Score=54.39 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+|-.+.|+|+.||||||+.+.|+--+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35678999999999999999998644
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0065 Score=54.00 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=21.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCC
Q 016804 118 EAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 118 e~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
-.++|+|+.|+|||||++.|++-.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998753
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.014 Score=52.48 Aligned_cols=35 Identities=23% Similarity=0.216 Sum_probs=28.5
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHc
Q 016804 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 104 ~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~G 139 (382)
+..++..-+++ .|.-+.|.|+||+|||||...+..
T Consensus 4 ~~~lHas~v~v-~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 4 KQTWHANFLVI-DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp CEEEESEEEEE-TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred cEEEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 45667776665 688899999999999999987764
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.007 Score=52.36 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3799999999999999999864
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0066 Score=51.82 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=19.2
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 016804 119 AVGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~G 139 (382)
.++|+|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 478999999999999999984
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.0066 Score=53.27 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 58899999999999999999864
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=95.42 E-value=0.0078 Score=52.87 Aligned_cols=22 Identities=50% Similarity=0.786 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999873
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0073 Score=52.41 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 38899999999999999998754
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0078 Score=56.53 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=20.2
Q ss_pred cEEEEEcCCCccHHHHHHHHHc
Q 016804 118 EAVGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 118 e~vaLiGpNGaGKSTLLklI~G 139 (382)
.++.|+|++||||||+.+.|+-
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999986
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0068 Score=52.62 Aligned_cols=23 Identities=35% Similarity=0.319 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 47899999999999999998754
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=95.38 E-value=0.0075 Score=56.91 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=21.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
.++|+|+.|||||||++.|+|...
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCCc
Confidence 589999999999999999999753
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.38 E-value=0.0068 Score=52.89 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998753
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0066 Score=51.67 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++++|+.|+|||||++.+.+-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999874
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0076 Score=53.03 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4799999999999999999864
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=95.36 E-value=0.0078 Score=61.72 Aligned_cols=43 Identities=19% Similarity=0.461 Sum_probs=33.4
Q ss_pred eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEE
Q 016804 105 HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV 148 (382)
Q Consensus 105 ~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I 148 (382)
.+++.+ +.+-+|+..+|+||+|+|||||++.|++-.....|.|
T Consensus 140 r~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i 182 (473)
T 1sky_E 140 KVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGI 182 (473)
T ss_dssp HHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCC
T ss_pred hHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcE
Confidence 356555 6788999999999999999999999987654333333
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.36 E-value=0.0077 Score=51.79 Aligned_cols=23 Identities=39% Similarity=0.485 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48899999999999999998753
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.35 E-value=0.0085 Score=51.71 Aligned_cols=22 Identities=36% Similarity=0.377 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999964
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.0078 Score=52.28 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48899999999999999998754
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=95.34 E-value=0.0092 Score=56.15 Aligned_cols=31 Identities=39% Similarity=0.485 Sum_probs=23.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCCCCccEE
Q 016804 118 EAVGIIGPSGTGKSTILKIIAGLLAPDKGEV 148 (382)
Q Consensus 118 e~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I 148 (382)
-.++++|.+|+|||||++.|.|-.....|.+
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~ 130 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQ 130 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC------
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCC
Confidence 4789999999999999999999776554543
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.34 E-value=0.0078 Score=52.75 Aligned_cols=23 Identities=35% Similarity=0.410 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998653
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.008 Score=52.13 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.008 Score=51.98 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998743
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.0056 Score=53.00 Aligned_cols=23 Identities=26% Similarity=0.314 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999998764
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=95.32 E-value=0.0074 Score=52.95 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.31 E-value=0.008 Score=52.37 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999875
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=95.31 E-value=0.0071 Score=52.02 Aligned_cols=23 Identities=35% Similarity=0.320 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMNE 45 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999753
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.30 E-value=0.009 Score=50.79 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
.+..+.|.||.|+|||||++.++....
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 356678999999999999999987654
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.01 Score=54.03 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.+..+.|+|+.||||||+.+.|+--+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998643
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.30 E-value=0.0083 Score=52.53 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 57999999999999999998754
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.29 E-value=0.0075 Score=53.61 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|++|+|||||++.+.+-
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4799999999999999988764
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=95.29 E-value=0.0098 Score=54.29 Aligned_cols=28 Identities=39% Similarity=0.458 Sum_probs=24.4
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCC
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
-+|-++.|-|+.||||||+++.|+-.+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999999987654
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.0083 Score=53.53 Aligned_cols=25 Identities=40% Similarity=0.557 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 117 GEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 117 Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+-+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578999999999999999998754
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.0086 Score=53.86 Aligned_cols=22 Identities=23% Similarity=0.486 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999875
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=95.28 E-value=0.011 Score=50.29 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=20.4
Q ss_pred cEEEEEcCCCccHHHHHHHHHcC
Q 016804 118 EAVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 118 e~vaLiGpNGaGKSTLLklI~Gl 140 (382)
=.++|+|+.|+|||||++.+.+-
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999864
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=95.27 E-value=0.0093 Score=55.70 Aligned_cols=23 Identities=22% Similarity=0.494 Sum_probs=21.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.|-.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999864
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.0091 Score=52.79 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
.++|+|+.|+|||||++.+.+-..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~~ 50 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNKF 50 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 379999999999999999997543
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.0086 Score=56.29 Aligned_cols=23 Identities=30% Similarity=0.700 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|..|||||||++.|.|-.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999864
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.23 E-value=0.0096 Score=51.87 Aligned_cols=22 Identities=14% Similarity=0.285 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999865
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=95.23 E-value=0.0098 Score=52.01 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=21.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
.++|+|++|+|||||++.+.+-..
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 488999999999999999998544
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.17 E-value=0.0086 Score=52.84 Aligned_cols=23 Identities=17% Similarity=0.341 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999999854
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=95.16 E-value=0.01 Score=58.43 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=22.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCC
Q 016804 118 EAVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 118 e~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
.+++|+||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3799999999999999999998664
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=95.15 E-value=0.011 Score=54.98 Aligned_cols=27 Identities=30% Similarity=0.487 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
+|.++.|.|++||||||+++.|+..+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999987654
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.14 E-value=0.0087 Score=55.39 Aligned_cols=28 Identities=29% Similarity=0.430 Sum_probs=22.0
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCC
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
.+|-++.|-|++||||||+.+.|+-.+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999987653
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=95.12 E-value=0.0099 Score=59.48 Aligned_cols=27 Identities=30% Similarity=0.270 Sum_probs=23.6
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcC
Q 016804 114 IRHGEAVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 114 i~~Ge~vaLiGpNGaGKSTLLklI~Gl 140 (382)
-....++.|+|++||||||+.+.|+.-
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 346789999999999999999999763
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.12 E-value=0.0098 Score=52.94 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.11 E-value=0.01 Score=51.60 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4799999999999999888764
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.10 E-value=0.0025 Score=60.76 Aligned_cols=42 Identities=7% Similarity=0.229 Sum_probs=30.7
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHH
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS 304 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~ 304 (382)
++.++++|| ...|++..+..+.+.+.+.... ..+|++|++..
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~-----------~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGV-----------TRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTT-----------EEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCC-----------ceEEEEeCchh
Confidence 468999999 7889998888888877765332 35667776554
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.01 Score=55.38 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=21.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
.++|+|..|+|||||++.|.|-..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~~ 51 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCCc
Confidence 689999999999999999998753
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.10 E-value=0.0093 Score=53.09 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999863
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.08 E-value=0.011 Score=53.89 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
+|-+++|.|+.||||||+.+.|+-.+.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 367899999999999999999997664
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.0066 Score=51.92 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=9.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~~ 32 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSEDA 32 (183)
T ss_dssp EEEEECCCCC-------------
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999988653
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=95.06 E-value=0.015 Score=51.18 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
|
| >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* | Back alignment and structure |
|---|
Probab=95.04 E-value=0.013 Score=53.63 Aligned_cols=27 Identities=26% Similarity=0.404 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
+|-++.+-|++||||||+++.|.-.+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999987664
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=95.03 E-value=0.013 Score=55.98 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=24.8
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHc
Q 016804 113 KIRHGEAVGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 113 ~i~~Ge~vaLiGpNGaGKSTLLklI~G 139 (382)
-+++|+++.|.||+|+|||||...++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999988875
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=95.02 E-value=0.01 Score=52.09 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=20.1
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q 016804 120 VGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
++|+|+.|+|||||++.+.+-.
T Consensus 28 i~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 28 LVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 7899999999999999999743
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.018 Score=68.18 Aligned_cols=27 Identities=30% Similarity=0.518 Sum_probs=24.5
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcC
Q 016804 114 IRHGEAVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 114 i~~Ge~vaLiGpNGaGKSTLLklI~Gl 140 (382)
+++|+++-|.||+|+|||||+..++.-
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLqia~~ 406 (2050)
T 3cmu_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAA 406 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 899999999999999999998877654
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.97 E-value=0.011 Score=51.23 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999865
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=94.95 E-value=0.013 Score=57.63 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
++.++.|+||+|||||||...|+--+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 566899999999999999999997663
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=94.93 E-value=0.013 Score=54.53 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.|.|-.
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999854
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=94.92 E-value=0.01 Score=51.89 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCSS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999753
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=94.91 E-value=0.013 Score=54.63 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++++|++|+|||||++.|.|-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999854
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=94.91 E-value=0.012 Score=52.37 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=20.7
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCC
Q 016804 118 EAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 118 e~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
-.++|+|+.|+|||||++-++.-.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 368999999999999999888653
|
| >3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* | Back alignment and structure |
|---|
Probab=94.86 E-value=0.015 Score=53.43 Aligned_cols=33 Identities=30% Similarity=0.388 Sum_probs=27.8
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEE
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV 148 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I 148 (382)
.+|.++.+-|+.||||||+.+.|+-.+.. .+.+
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~-~~~~ 35 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP-NCKL 35 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS-SEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc-cceE
Confidence 36899999999999999999999987765 3433
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=94.78 E-value=0.015 Score=56.84 Aligned_cols=25 Identities=28% Similarity=0.547 Sum_probs=22.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCC
Q 016804 118 EAVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 118 e~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
..+.|+||+|||||||.+.|+.-+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3789999999999999999997653
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=94.78 E-value=0.016 Score=53.47 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=24.7
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCC
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
.+|-++.+.|++||||||+.+.|+..+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3688999999999999999999987654
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.77 E-value=0.015 Score=52.99 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
...-+.|.||+|+|||||.+.++...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34558899999999999999998743
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=94.74 E-value=0.016 Score=56.54 Aligned_cols=25 Identities=32% Similarity=0.558 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 117 GEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 117 Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+.+++|+||+|||||||...|+--+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578999999999999999998765
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=94.74 E-value=0.021 Score=51.24 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=22.5
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHH
Q 016804 114 IRHGEAVGIIGPSGTGKSTILKIIA 138 (382)
Q Consensus 114 i~~Ge~vaLiGpNGaGKSTLLklI~ 138 (382)
+++|+++.|.|+.|+|||||.--++
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 8899999999999999999976554
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=94.73 E-value=0.0096 Score=55.18 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=24.4
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCC
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
.++-+++|.|+.||||||+.+.|+-.+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5678999999999999999999987763
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=94.73 E-value=0.012 Score=59.29 Aligned_cols=22 Identities=50% Similarity=0.708 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|++|+|||||++.|+|-
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999999883
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=94.72 E-value=0.0062 Score=53.93 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998643
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.72 E-value=0.017 Score=52.26 Aligned_cols=22 Identities=50% Similarity=0.786 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999974
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=94.71 E-value=0.0062 Score=52.97 Aligned_cols=22 Identities=23% Similarity=0.554 Sum_probs=4.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999998865
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=94.68 E-value=0.0034 Score=57.89 Aligned_cols=32 Identities=41% Similarity=0.678 Sum_probs=24.9
Q ss_pred eEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC
Q 016804 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 107 L~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl 140 (382)
+.++.+..+.| +.|.||+|+|||||++.|+..
T Consensus 36 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 36 YANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp HHHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred HHHCCCCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence 33444455566 779999999999999999974
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.66 E-value=0.014 Score=51.33 Aligned_cols=23 Identities=13% Similarity=0.293 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 37999999999999999998653
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=94.64 E-value=0.0097 Score=51.32 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=19.3
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 016804 119 AVGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~G 139 (382)
.++++|+.|+|||||++.+.+
T Consensus 24 ~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999964
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.64 E-value=0.016 Score=51.86 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=94.58 E-value=0.016 Score=51.23 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=19.0
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 016804 119 AVGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~G 139 (382)
.++|+|+.|+|||||++.+.+
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 588999999999999988875
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=94.51 E-value=0.018 Score=51.43 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.45 E-value=0.017 Score=50.75 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999864
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=94.44 E-value=0.0044 Score=62.77 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=28.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC
Q 016804 118 EAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG 152 (382)
Q Consensus 118 e~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G 152 (382)
.+++|+|++|+||||++..|++.+......|.+-.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~ 134 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIA 134 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 58999999999999999999998764434555543
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=94.31 E-value=0.022 Score=49.33 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.+.|.||.|+|||||++.++..+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 38899999999999999998754
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.30 E-value=0.022 Score=48.03 Aligned_cols=27 Identities=26% Similarity=0.274 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
.+.-+-|.||+|+|||++.+.|.....
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 455688999999999999999987654
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=94.18 E-value=0.025 Score=51.95 Aligned_cols=29 Identities=21% Similarity=0.407 Sum_probs=24.0
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 113 ~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.+.+..++.|+||.||||+|..+.|+--+
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34566789999999999999999998543
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=94.14 E-value=0.025 Score=55.07 Aligned_cols=25 Identities=24% Similarity=0.527 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 117 GEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 117 Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
..++.|+||+|||||||...|+--.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 3578999999999999999998665
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=94.13 E-value=0.018 Score=58.54 Aligned_cols=28 Identities=21% Similarity=0.374 Sum_probs=24.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLLAP 143 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~~p 143 (382)
++.++.++|++|+||||++.-|+..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999987653
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=94.12 E-value=0.043 Score=64.09 Aligned_cols=27 Identities=30% Similarity=0.518 Sum_probs=24.2
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcC
Q 016804 114 IRHGEAVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 114 i~~Ge~vaLiGpNGaGKSTLLklI~Gl 140 (382)
+++|+++-|.||+|+|||||...++.-
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLq~a~~ 406 (1706)
T 3cmw_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAA 406 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 899999999999999999998777643
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.12 E-value=0.019 Score=54.80 Aligned_cols=28 Identities=21% Similarity=0.406 Sum_probs=24.1
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCC
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
..+..+.|.||+|+|||||++.++....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999987653
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=93.88 E-value=0.035 Score=49.22 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=20.7
Q ss_pred CCcEEEEEcCCCccHHHHH-HHHHcC
Q 016804 116 HGEAVGIIGPSGTGKSTIL-KIIAGL 140 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLL-klI~Gl 140 (382)
+|.++.+.||.||||||++ +++..+
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4889999999999999997 555443
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.88 E-value=0.037 Score=52.56 Aligned_cols=30 Identities=30% Similarity=0.334 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCCCcc
Q 016804 117 GEAVGIIGPSGTGKSTILKIIAGLLAPDKG 146 (382)
Q Consensus 117 Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG 146 (382)
+-.++++|.+|+|||||+|.|.|-.....|
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~~~~~ 149 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNIAKTG 149 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC---
T ss_pred CceEEEEecCCCchHHHHHHHhcCceeecC
Confidence 346899999999999999999987644333
|
| >4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A* | Back alignment and structure |
|---|
Probab=93.84 E-value=0.034 Score=50.32 Aligned_cols=26 Identities=27% Similarity=0.515 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCC
Q 016804 117 GEAVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 117 Ge~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
|.+++|=|+-||||||+++.|+-.+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56899999999999999999997664
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=93.78 E-value=0.035 Score=50.38 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
++.|+||.||||+|..+.|+--+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999998543
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=93.78 E-value=0.034 Score=52.01 Aligned_cols=26 Identities=38% Similarity=0.549 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.+..+.|.||.|+|||||.+.++..+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 34568899999999999999888765
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.81 E-value=0.012 Score=51.70 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=18.9
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 016804 119 AVGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~G 139 (382)
.++|+|+.|+|||||++.+.+
T Consensus 32 ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 589999999999999988864
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=93.65 E-value=0.021 Score=50.71 Aligned_cols=21 Identities=38% Similarity=0.705 Sum_probs=18.4
Q ss_pred EEEEcCCCccHHHHHHH-HHcC
Q 016804 120 VGIIGPSGTGKSTILKI-IAGL 140 (382)
Q Consensus 120 vaLiGpNGaGKSTLLkl-I~Gl 140 (382)
++|+|+.|+|||||++. +.|-
T Consensus 18 i~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 18 LVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 78999999999999998 5554
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=93.58 E-value=0.034 Score=54.18 Aligned_cols=27 Identities=37% Similarity=0.553 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
+.-+++|+|+.|+|||||++.|++.+.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345799999999999999999987653
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=93.58 E-value=0.029 Score=56.15 Aligned_cols=22 Identities=50% Similarity=0.708 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|++|+|||||++.|.|-
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
|
| >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* | Back alignment and structure |
|---|
Probab=93.55 E-value=0.034 Score=55.99 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=21.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCC
Q 016804 118 EAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 118 e~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.+++|.||+|||||||.+.|+--+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 368999999999999999998654
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=93.54 E-value=0.035 Score=53.30 Aligned_cols=29 Identities=45% Similarity=0.551 Sum_probs=25.0
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCC
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAP 143 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p 143 (382)
.+|..+.|.||.|+|||||.+.++..+..
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 34678999999999999999999987653
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=93.39 E-value=0.04 Score=50.98 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl 140 (382)
....+.|.||.|+|||||.+.++..
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3446889999999999999999875
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=93.37 E-value=0.027 Score=54.81 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=21.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|..|+|||||++.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999964
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=93.36 E-value=0.039 Score=55.07 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|.+++|||||++.|.|-.
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 37999999999999999999864
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=93.31 E-value=0.048 Score=52.01 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=20.9
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCC
Q 016804 118 EAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 118 e~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
-.++|+|+.|+|||||++.+.+-.
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~ 27 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNY 27 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 358999999999999999987763
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=93.29 E-value=0.041 Score=51.09 Aligned_cols=25 Identities=36% Similarity=0.640 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 117 GEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 117 Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+.-+.|.||.|+|||||.+.++...
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3457799999999999999999866
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=93.24 E-value=0.039 Score=54.36 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl 140 (382)
++..++++|++|+|||||+|.|.|-
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 4667999999999999999999986
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=93.21 E-value=0.047 Score=52.42 Aligned_cols=26 Identities=27% Similarity=0.269 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.+..+.|.||.|+|||||++.++...
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 35679999999999999999998754
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.18 E-value=0.0075 Score=52.82 Aligned_cols=23 Identities=39% Similarity=0.443 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.+.+-.
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.16 E-value=0.05 Score=52.28 Aligned_cols=26 Identities=35% Similarity=0.469 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+..-+.|.||.|+|||||.+.++...
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCccHHHHHHHHHHHc
Confidence 44568899999999999999999865
|
| >2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} | Back alignment and structure |
|---|
Probab=93.15 E-value=0.052 Score=50.98 Aligned_cols=26 Identities=19% Similarity=0.218 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.|..+.|.||.|+|||||++.++.-.
T Consensus 30 ~~~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 30 NYPLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp HCSEEEEECCTTSSHHHHHHHHHHHS
T ss_pred cCCeEEEECCCcCCHHHHHHHHHHHc
Confidence 36899999999999999999988643
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=93.12 E-value=0.055 Score=51.81 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 117 GEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 117 Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+.-+.|.||.|+|||+|+++|+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998644
|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
Probab=93.11 E-value=0.065 Score=49.23 Aligned_cols=27 Identities=37% Similarity=0.395 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
.+.-+.|.||+|+|||+|.+.|+....
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 345688999999999999999998754
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=93.07 E-value=0.046 Score=53.00 Aligned_cols=25 Identities=36% Similarity=0.700 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 117 GEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 117 Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+.-+.|.||+|+||||+.+.|+...
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3457799999999999999999876
|
| >1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=93.00 E-value=0.096 Score=50.85 Aligned_cols=37 Identities=27% Similarity=0.361 Sum_probs=29.7
Q ss_pred CCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHc
Q 016804 102 GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 102 g~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~G 139 (382)
.....+|+.-+++ .|.-+.|.|+||+|||||.-.+..
T Consensus 133 a~~~~~H~~~v~~-~g~gvli~G~sG~GKStlal~l~~ 169 (312)
T 1knx_A 133 ATVAQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp CCCEEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred hhcceeEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3456788876666 688899999999999999877753
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=92.98 E-value=0.045 Score=56.90 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=21.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|..|+|||||++.|.|-.
T Consensus 67 ~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 67 MVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 68999999999999999999864
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=92.96 E-value=0.055 Score=52.94 Aligned_cols=32 Identities=25% Similarity=0.496 Sum_probs=25.1
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC
Q 016804 109 GVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 109 ~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.+.++++---.++|+|.++||||||++.|++-
T Consensus 150 ~~~leLk~la~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 150 YIVLELKVLADVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp EEEEEEECCCCEEEESSTTSSHHHHHHHSEEE
T ss_pred hHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcC
Confidence 44455554446899999999999999999874
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=92.90 E-value=0.042 Score=54.10 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
++..++++|.+|+|||||+|.|.|-.
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhhh
Confidence 56789999999999999999999863
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=92.84 E-value=0.054 Score=50.36 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHcC
Q 016804 118 EAVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 118 e~vaLiGpNGaGKSTLLklI~Gl 140 (382)
-.+||+||.||||||+.+.|+--
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHH
Confidence 45899999999999999999753
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.79 E-value=0.062 Score=52.28 Aligned_cols=27 Identities=37% Similarity=0.482 Sum_probs=23.1
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
....-+.|.||.|+|||||++.|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 345678999999999999999999754
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.79 E-value=0.051 Score=54.97 Aligned_cols=39 Identities=31% Similarity=0.509 Sum_probs=28.7
Q ss_pred eeEEEeCCcE--EEEEcCCCccHHHHHHHHHcCCCCCccEE
Q 016804 110 VSFKIRHGEA--VGIIGPSGTGKSTILKIIAGLLAPDKGEV 148 (382)
Q Consensus 110 vsl~i~~Ge~--vaLiGpNGaGKSTLLklI~Gl~~p~sG~I 148 (382)
+.-.+..|.+ +.|.||+|+|||||.++|+......-..+
T Consensus 41 L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l 81 (447)
T 3pvs_A 41 LPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERI 81 (447)
T ss_dssp HHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence 3333444554 88999999999999999999876543433
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=92.78 E-value=0.063 Score=52.60 Aligned_cols=28 Identities=14% Similarity=0.208 Sum_probs=25.2
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHc
Q 016804 112 FKIRHGEAVGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 112 l~i~~Ge~vaLiGpNGaGKSTLLklI~G 139 (382)
--+++|..+.|.||.|+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3588899999999999999999999975
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=92.77 E-value=0.065 Score=51.16 Aligned_cols=26 Identities=35% Similarity=0.482 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+..-+.|.||.|+|||||.+.++...
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 34458899999999999999998753
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=92.75 E-value=0.055 Score=51.42 Aligned_cols=24 Identities=33% Similarity=0.558 Sum_probs=21.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
.+.|.||+|+|||||++.|+....
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECcCCCCHHHHHHHHHHHhC
Confidence 588999999999999999987653
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=92.65 E-value=0.041 Score=56.06 Aligned_cols=25 Identities=32% Similarity=0.496 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.|=.++|+|+.|+|||||++.|+|-
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3445899999999999999999884
|
| >1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A* | Back alignment and structure |
|---|
Probab=92.63 E-value=0.061 Score=57.00 Aligned_cols=38 Identities=26% Similarity=0.308 Sum_probs=27.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCC-CccEEEECCE
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLLAP-DKGEVYIRGR 153 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~~p-~sG~I~i~G~ 153 (382)
+|.++.|+|.+||||||+.+.|+-.+.. .-..+.++|.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD 89 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 89 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechH
Confidence 4668999999999999999999875421 0124556654
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=92.60 E-value=0.059 Score=51.03 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=20.9
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCC
Q 016804 118 EAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 118 e~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
..+.|.||.|+|||+|.+.|+.-+
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 457788999999999999999765
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=92.56 E-value=0.062 Score=52.34 Aligned_cols=32 Identities=13% Similarity=0.196 Sum_probs=22.4
Q ss_pred CCCChHHHHHHHHHHHH---hcCCCCCCCCCcEEEEeCCC
Q 016804 225 SELSGGMKKRVALARSI---IFDNTKESVEPEVLLYDEPT 261 (382)
Q Consensus 225 ~~LSGGqrQRVaIArAL---~~~~~~~a~~P~iLLLDEPt 261 (382)
..+|+||+||.+|+|+| .++ .+++++++|||+
T Consensus 295 ~~~sld~~~r~~l~~~l~~l~~~-----~~~~ililde~~ 329 (365)
T 1lw7_A 295 LRSLGSQKQRQQFQQLLKKLLDK-----YKVPYIEIESPS 329 (365)
T ss_dssp ------CCSHHHHHHHHHHHHHG-----GGCCCEEEECSS
T ss_pred CcCCccHHHHHHHHHHHHHHHHH-----cCCCEEEeCCCC
Confidence 35999999999999999 541 259999999997
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 382 | ||||
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 3e-64 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 5e-64 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 2e-56 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 9e-56 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 2e-55 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 2e-55 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 2e-52 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 8e-52 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 2e-50 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 6e-46 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 1e-45 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 1e-45 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 4e-45 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 4e-45 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 2e-44 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 6e-43 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 7e-42 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 1e-41 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 3e-39 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 2e-38 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 1e-12 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 3e-08 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 8e-06 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-07 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-04 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 5e-04 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 0.002 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 202 bits (516), Expect = 3e-64
Identities = 73/283 (25%), Positives = 128/283 (45%), Gaps = 52/283 (18%)
Query: 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149
V + N+ K FG + ++ I+ GE + ++GPSG GK+T L++IAGL P +G +Y
Sbjct: 5 VEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 64
Query: 150 IRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKE 209
R L + I +VFQS A++ +TV EN+ F L + K ++I + V+
Sbjct: 65 FGDRDVTYLPPKDR----NISMVFQSYAVWPHMTVYENIAFPL-KIKKFPKDEIDKRVRW 119
Query: 210 NLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAS 269
+ ++ + +R P++LSGG ++RVA+AR+I+ + P+VLL DEP + LD
Sbjct: 120 AAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVE-------PDVLLMDEPLSNLDAKLR 172
Query: 270 TVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329
+ I+ + +K + + + VTH D
Sbjct: 173 VAMRAEIKKLQQKLK---------VTTIYVTHDQVEAMTMGD------------------ 205
Query: 330 AVAPDKEVFFIYRLIFLYEGKIVWQGMTHE-FTSSSNPIVQQF 371
R+ + G+++ G E + ++ V F
Sbjct: 206 ------------RIAVMNRGQLLQIGSPTEVYLRPNSVFVATF 236
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 203 bits (517), Expect = 5e-64
Identities = 82/299 (27%), Positives = 138/299 (46%), Gaps = 60/299 (20%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
+ +++K +G +L+GVS + R G+ + IIG SG+GKST L+ I L P +G + +
Sbjct: 3 LHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVN 62
Query: 152 GRKRAGLISDEEISGL-----------RIGLVFQSAALFDSLTVRENVGFLLYENSKMRD 200
G+ + + + R+ +VFQ L+ +TV ENV + +
Sbjct: 63 GQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSK 122
Query: 201 EQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDE 259
E + LA VG+ + + P LSGG ++RV++AR++ +EP+VLL+DE
Sbjct: 123 HDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALA-------MEPDVLLFDE 175
Query: 260 PTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIF 319
PT+ LDP V +++ + ++G + VVVTH+ R
Sbjct: 176 PTSALDPELVGEVLRIMQQLAEEG----------KTMVVVTHEMGFARHVSS-------- 217
Query: 320 GHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHE-FTSSSNPIVQQFASGSLE 377
+IFL++GKI +G + F + +P +QQF GSL+
Sbjct: 218 ----------------------HVIFLHQGKIEEEGDPEQVFGNPQSPRLQQFLKGSLK 254
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 182 bits (464), Expect = 2e-56
Identities = 80/274 (29%), Positives = 124/274 (45%), Gaps = 56/274 (20%)
Query: 91 LIDCRNVYKSFGEK----HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG 146
+I +NV K++ + L+ V+ I+ GE V I+GPSG+GKST+L II L P +G
Sbjct: 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG 60
Query: 147 EVYIRGRKRAGLISDE--EISGLRIGLVFQSAALFDSLTVRENV--GFLLYENSKMRDEQ 202
EVYI K L DE +I +IG VFQ L LT ENV + M E+
Sbjct: 61 EVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEE 120
Query: 203 ISELVKENLAAVGL-KGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPT 261
+ E L L + + P++LSGG ++RVA+AR++ P ++L D+PT
Sbjct: 121 RRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALA-------NNPPIILADQPT 173
Query: 262 AGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGH 321
LD + L++ +++ E+G + VVVTH + R
Sbjct: 174 GALDSKTGEKIMQLLKKLNE--EDGK-------TVVVVTHDINVARFG------------ 212
Query: 322 IDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQG 355
R+I+L +G++ +
Sbjct: 213 -------------------ERIIYLKDGEVEREE 227
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 181 bits (460), Expect = 9e-56
Identities = 79/288 (27%), Positives = 133/288 (46%), Gaps = 55/288 (19%)
Query: 91 LIDCRNVYKSFGEK----HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG 146
+I N+ K F + L VS + G+ G+IG SG GKST+++ + L P +G
Sbjct: 1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG 60
Query: 147 EVYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQIS 204
V + G++ L S+ E++ R IG++FQ L S TV NV L E +++
Sbjct: 61 SVLVDGQELTTL-SESELTKARRQIGMIFQHFNLLSSRTVFGNVALPL-ELDNTPKDEVK 118
Query: 205 ELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGL 264
V E L+ VGL D PS LSGG K+RVA+AR++ + P+VLL DE T+ L
Sbjct: 119 RRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASN-------PKVLLCDEATSAL 171
Query: 265 DPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDV 324
DP + + +L++ ++++ + +++TH+ ++R D
Sbjct: 172 DPATTRSILELLKDINRRLG---------LTILLITHEMDVVKRICD------------- 209
Query: 325 VIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHE-FTSSSNPIVQQF 371
+ + G+++ Q E F+ P+ Q+F
Sbjct: 210 -----------------CVAVISNGELIEQDTVSEVFSHPKTPLAQKF 240
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 180 bits (458), Expect = 2e-55
Identities = 75/284 (26%), Positives = 127/284 (44%), Gaps = 50/284 (17%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
+ +V+K FGE +R +S +++ GE + ++GPSG GK+T L++IAGL P +G++YI
Sbjct: 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYI 62
Query: 151 RGRKRAGLISDEEI--SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVK 208
+ A + I +VFQS AL+ +TV +N+ F + K+ ++I + V+
Sbjct: 63 GDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAF-PLKLRKVPRQEIDQRVR 121
Query: 209 ENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIA 268
E +GL + +R P ELSGG ++RVAL R+I+ P+V L DEP + LD
Sbjct: 122 EVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRK-------PQVFLMDEPLSNLDAKL 174
Query: 269 STVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIIL 328
+ ++ + ++ + + VTH D
Sbjct: 175 RVRMRAELKKLQRQLG---------VTTIYVTHDQVEAMTMGD----------------- 208
Query: 329 GAVAPDKEVFFIYRLIFLYEGKIVWQGMTHE-FTSSSNPIVQQF 371
R+ + G + G E + +N V F
Sbjct: 209 -------------RIAVMNRGVLQQVGSPDEVYDKPANTFVAGF 239
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 180 bits (458), Expect = 2e-55
Identities = 69/294 (23%), Positives = 124/294 (42%), Gaps = 62/294 (21%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
++ N+ K FGE L GVS + G+ IIGP+G+GKST++ +I G L D+G VY
Sbjct: 4 ILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYF 63
Query: 151 RGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGF------------LLYENSKM 198
+ E+ I FQ+ +TV EN+ L Y+
Sbjct: 64 ENKDITNKE-PAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIP 122
Query: 199 RDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYD 258
++E++ E + L + L + DR ELSGG K V + R+++ + P++++ D
Sbjct: 123 KEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTN-------PKMIVMD 175
Query: 259 EPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQI 318
EP AG+ P + + + + + KG +++++ H+ + +D
Sbjct: 176 EPIAGVAPGLAHDIFNHVLELKAKG----------ITFLIIEHRLDIVLNYID------- 218
Query: 319 FGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSS--SNPIVQQ 370
L ++ G+I+ +G E + S+P V +
Sbjct: 219 -----------------------HLYVMFNGQIIAEGRGEEEIKNVLSDPKVVE 249
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 172 bits (437), Expect = 2e-52
Identities = 74/281 (26%), Positives = 125/281 (44%), Gaps = 52/281 (18%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
+ +NV K++GE + + ++ I GE V +GPSG GKST+L++IAGL G+++I
Sbjct: 1 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG 60
Query: 152 GRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENL 211
++ E +G+VFQS AL+ L+V EN+ F L + + + E I++ V +
Sbjct: 61 EKRMNDTPPAER----GVGMVFQSYALYPHLSVAENMSFGL-KLAGAKKEVINQRVNQVA 115
Query: 212 AAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTV 271
+ L + DR P LSGG ++RVA+ R+++ + P V L DEP + LD
Sbjct: 116 EVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAE-------PSVFLLDEPLSNLDAALRVQ 168
Query: 272 VEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAV 331
+ I +HK+ + + VTH D
Sbjct: 169 MRIEISRLHKRLGR---------TMIYVTHDQVEAMTLAD-------------------- 199
Query: 332 APDKEVFFIYRLIFLYEGKIVWQGMTHE-FTSSSNPIVQQF 371
+++ L G++ G E + ++ V F
Sbjct: 200 ----------KIVVLDAGRVAQVGKPLELYHYPADRFVAGF 230
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 170 bits (433), Expect = 8e-52
Identities = 65/282 (23%), Positives = 123/282 (43%), Gaps = 51/282 (18%)
Query: 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV 148
D++++ ++++ +G H ++G+ K+ G+ V +IG +G GK+T L IAGL+ KG++
Sbjct: 4 DIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
Query: 149 YIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVK 208
G+ I+ + I LV + +F LTV EN+ Y N K ++ +L
Sbjct: 64 IFNGQDITNK-PAHVINRMGIALVPEGRRIFPELTVYENLMMGAY-NRKDKEGIKRDLEW 121
Query: 209 ENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIA 268
LK +L LSGG ++ +A+ R+++ P++L+ DEP+ GL PI
Sbjct: 122 IFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSR-------PKLLMMDEPSLGLAPIL 174
Query: 269 STVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIIL 328
+ V ++I+ ++++G + ++V +
Sbjct: 175 VSEVFEVIQKINQEG----------TTILLVEQNALGALKVAH----------------- 207
Query: 329 GAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQ 370
L G+IV +G E N +V++
Sbjct: 208 -------------YGYVLETGQIVLEGKASELL--DNEMVRK 234
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 167 bits (423), Expect = 2e-50
Identities = 62/286 (21%), Positives = 120/286 (41%), Gaps = 58/286 (20%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
+ +++ K G+K IL+G+SF+I GE G+IGP+G GK+T L+II+ L+ P G V +
Sbjct: 3 VVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVF 62
Query: 152 GRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENL 211
G+ + I + + A + ++ E + F+ +I E+V+
Sbjct: 63 GKNVVEEPHEVRK---LISYLPEEAGAYRNMQGIEYLRFVA-GFYASSSSEIEEMVERAT 118
Query: 212 AAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTV 271
GL S S GM +++ +AR+++ V P + + DEPT+GLD + +
Sbjct: 119 EIAGLGEKIKDRVSTYSKGMVRKLLIARALM-------VNPRLAILDEPTSGLDVLNARE 171
Query: 272 VEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAV 331
V +++ ++ + +V +H + D
Sbjct: 172 VRKILKQASQE----------GLTILVSSHNMLEVEFLCD-------------------- 201
Query: 332 APDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFASGSLE 377
R+ ++ G IV G E + +++ + ++E
Sbjct: 202 ----------RIALIHNGTIVETGTVEE-------LKERYKAQNIE 230
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 155 bits (393), Expect = 6e-46
Identities = 87/286 (30%), Positives = 128/286 (44%), Gaps = 51/286 (17%)
Query: 90 VLIDCRNVYKSF--GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE 147
V I +NV K F G+ L V+ I +GE GI+GPSG GK+T ++IIAGL P GE
Sbjct: 2 VRIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 148 VYIRGRKRAGLISDEEISGLR-IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISEL 206
+Y R A R IG+VFQ+ AL+ +LT EN+ F L N KM E+I +
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPL-TNMKMSKEEIRKR 120
Query: 207 VKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDP 266
V+E + + V + P ELSG ++RVALAR+++ D +LL DEP + LD
Sbjct: 121 VEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDP-------SLLLLDEPFSNLDA 173
Query: 267 IASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVI 326
L++ V + + +VV+H + I D
Sbjct: 174 RMRDSARALVKEVQSRLGV---------TLLVVSHDPADIFAIAD--------------- 209
Query: 327 ILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHE-FTSSSNPIVQQF 371
R+ L +GK+V G + + + + V
Sbjct: 210 ---------------RVGVLVKGKLVQVGKPEDLYDNPVSIQVASL 240
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 154 bits (390), Expect = 1e-45
Identities = 65/282 (23%), Positives = 124/282 (43%), Gaps = 56/282 (19%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
+I+ ++ + + L +S K+ GE I+GP+G GK+ L++IAG PD G + +
Sbjct: 1 MIEIESLSRKWK-NFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILL 59
Query: 151 RGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKEN 210
G+ L ++ I V+Q+ +LF + V++N+ F + +++ + ++
Sbjct: 60 DGKDVTDLSPEKH----DIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARD- 114
Query: 211 LAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAST 270
+ ++ + DR P LSGG ++RVALAR+++ + ++LL DEP + LDP
Sbjct: 115 ---LKIEHLLDRNPLTLSGGEQQRVALARALVTNP-------KILLLDEPLSALDPRTQE 164
Query: 271 VVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGA 330
+++ +HKK + + + +TH + R D
Sbjct: 165 NAREMLSVLHKKNK---------LTVLHITHDQTEARIMAD------------------- 196
Query: 331 VAPDKEVFFIYRLIFLYEGKIVWQGMTHE-FTSSSNPIVQQF 371
R+ + +GK++ G E F V F
Sbjct: 197 -----------RIAVVMDGKLIQVGKPEEIFEKPVEGRVASF 227
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 155 bits (394), Expect = 1e-45
Identities = 55/313 (17%), Positives = 109/313 (34%), Gaps = 72/313 (23%)
Query: 66 ATKFNDSSKSENVNTLFEPEDDGDVLIDCRNV---YKSFGEKHILRGVSFKIRHGEAVGI 122
T F + E + + + D D NV + +L+ ++ I GE + I
Sbjct: 8 VTAFWEEGFGELLEKVQQSNGDRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAI 67
Query: 123 IGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSL 182
G +G+GK+++L +I G L +G + G R+ Q + +
Sbjct: 68 TGSTGSGKTSLLMLILGELEASEGIIKHSG---------------RVSFCSQFSWIMPG- 111
Query: 183 TVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSE----LSGGMKKRVALA 238
T++EN+ F + + R + + + + ++ + E LSGG + R++LA
Sbjct: 112 TIKENIIFGV-SYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLA 170
Query: 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVV 298
R++ D ++ L D P LD V + + ++
Sbjct: 171 RAVYKD-------ADLYLLDSPFGYLDVFTEEQVFESCVCKLMAN----------KTRIL 213
Query: 299 VTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTH 358
VT + +R+A D +++ L++G + G
Sbjct: 214 VTSKMEHLRKA-D------------------------------KILILHQGSSYFYGTFS 242
Query: 359 EFTSSSNPIVQQF 371
E S +
Sbjct: 243 ELQSLRPDFSSKL 255
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 153 bits (387), Expect = 4e-45
Identities = 56/281 (19%), Positives = 107/281 (38%), Gaps = 55/281 (19%)
Query: 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149
+++ ++V E L +S ++R GE + ++GP+G GKST+L +AG+ KG +
Sbjct: 2 IVMQLQDV----AESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQ 56
Query: 150 IRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKE 209
G+ L + Q + V + D+ +EL+ +
Sbjct: 57 FAGQPLEAW--SATKLALHRAYLSQQQTPPFATPVWHYLTL------HQHDKTRTELLND 108
Query: 210 NLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAS 269
A+ L R ++LSGG +RV LA ++ + + ++LL DEP LD
Sbjct: 109 VAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQ 168
Query: 270 TVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329
+ ++ ++ ++ ++G + V+ +H + R
Sbjct: 169 SALDKILSALCQQG----------LAIVMSSHDLNHTLRHAH------------------ 200
Query: 330 AVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQ 370
R L GK++ G E + P + Q
Sbjct: 201 ------------RAWLLKGGKMLASGRREEVL--TPPNLAQ 227
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 153 bits (389), Expect = 4e-45
Identities = 69/277 (24%), Positives = 113/277 (40%), Gaps = 65/277 (23%)
Query: 92 IDCRNVYKSF--GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149
ID +V + E IL+ ++ I GE V +G SG GKST++ +I G++
Sbjct: 17 IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQIL 76
Query: 150 IRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELV 207
I G I D LR IGLV Q LF S TV+EN+ + + +++
Sbjct: 77 IDGHN----IKDFLTGSLRNQIGLVQQDNILF-SDTVKENILLGRPTATDEEVVEAAKMA 131
Query: 208 K-----ENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA 262
NL G +LSGG K+R+++AR + + P +L+ DE T+
Sbjct: 132 NAHDFIMNLPQ-GYDTEVGERGVKLSGGQKQRLSIARIFLNN-------PPILILDEATS 183
Query: 263 GLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHI 322
LD + +++++ + + K + ++V H+ STI A D
Sbjct: 184 ALDLESESIIQEALDVLSKD-----------RTTLIVAHRLSTITHA-D----------- 220
Query: 323 DVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHE 359
+++ + G IV G TH
Sbjct: 221 -------------------KIVVIENGHIVETG-THR 237
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 151 bits (383), Expect = 2e-44
Identities = 67/291 (23%), Positives = 124/291 (42%), Gaps = 63/291 (21%)
Query: 91 LIDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149
++ R+V ++ + + ILR +SF+ + + GPSG GKSTI ++ P GE+
Sbjct: 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 150 IRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLL-----YENSKMRDEQ 202
I G+ I + + R IG V Q +A+ T+REN+ + L E+ +
Sbjct: 61 IDGQP----IDNISLENWRSQIGFVSQDSAIMA-GTIRENLTYGLEGDYTDEDLWQVLDL 115
Query: 203 ISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA 262
L ++SGG ++R+A+AR+ + + P++L+ DE TA
Sbjct: 116 AFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRN-------PKILMLDEATA 168
Query: 263 GLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHI 322
LD + ++V+ + S+ K + +V+ H+ STI A D
Sbjct: 169 SLDSESESMVQKALDSLMKG-----------RTTLVIAHRLSTIVDA-D----------- 205
Query: 323 DVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFAS 373
++ F+ +G+I G H +++P+ ++ S
Sbjct: 206 -------------------KIYFIEKGQITGSG-KHNELVATHPLYAKYVS 236
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 148 bits (374), Expect = 6e-43
Identities = 62/276 (22%), Positives = 118/276 (42%), Gaps = 62/276 (22%)
Query: 92 IDCRNVYKSFG--EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149
++ RNV ++ E LR ++ KI G+ V ++G SG+GKSTI +I D+G +
Sbjct: 14 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL 73
Query: 150 IRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELV 207
+ G + + ++ LR + LV Q+ LF+ E S+ + E+ + +
Sbjct: 74 MDGHD----LREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMA 129
Query: 208 K--ENLAAV--GLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAG 263
+ + + GL + LSGG ++R+A+AR+++ + +L+ DE T+
Sbjct: 130 YAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALL-------RDSPILILDEATSA 182
Query: 264 LDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHID 323
LD + ++ + + K + +V+ H+ STI +A D
Sbjct: 183 LDTESERAIQAALDELQKN-----------RTSLVIAHRLSTIEQA-D------------ 218
Query: 324 VVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHE 359
++ + +G IV +G TH
Sbjct: 219 ------------------EIVVVEDGIIVERG-THS 235
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 145 bits (367), Expect = 7e-42
Identities = 64/279 (22%), Positives = 117/279 (41%), Gaps = 65/279 (23%)
Query: 92 IDCRNVYKSFG---EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV 148
+ ++V ++ + +L+G++F +R GE ++GP+G+GKST+ ++ L P G++
Sbjct: 12 VQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQL 71
Query: 149 YIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISEL 206
+ G+ + E L + V Q +F +++EN+ + L +E +
Sbjct: 72 LLDGKP----LPQYEHRYLHRQVAAVGQEPQVF-GRSLQENIAYGL-TQKPTMEEITAAA 125
Query: 207 VKENLAAV------GLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEP 260
VK + G D S+LSGG ++ VALAR++I P VL+ D+
Sbjct: 126 VKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRK-------PCVLILDDA 178
Query: 261 TAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFG 320
T+ LD + VE L+ ++ S +++T S + +A D
Sbjct: 179 TSALDANSQLQVEQLLYESPERYS---------RSVLLITQHLSLVEQA-D--------- 219
Query: 321 HIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHE 359
++FL G I G TH+
Sbjct: 220 ---------------------HILFLEGGAIREGG-THQ 236
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 143 bits (361), Expect = 1e-41
Identities = 45/219 (20%), Positives = 92/219 (42%), Gaps = 26/219 (11%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
++ R++ + K +L ++ I G V GP+G GK+T+LK I+ L P KGE+
Sbjct: 3 LEIRDLSVGYD-KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYN 61
Query: 152 GRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENL 211
G + +I + + + ++V + + + ++ + + L
Sbjct: 62 GVPITKVKG-------KIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNK---NEIMDAL 111
Query: 212 AAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTV 271
+V + ++ + ELS G +RV LA +++ + E+ + D+P +D +
Sbjct: 112 ESVEVLDLKKK-LGELSQGTIRRVQLASTLLVNA-------EIYVLDDPVVAIDEDSKHK 163
Query: 272 VEDLIRSVHKKGENGLA-----NPGNIASYVVVTHQHST 305
V I + K E G+ + H++ST
Sbjct: 164 VLKSILEILK--EKGIVIISSREELSYCDVNENLHKYST 200
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 138 bits (348), Expect = 3e-39
Identities = 64/274 (23%), Positives = 118/274 (43%), Gaps = 59/274 (21%)
Query: 92 IDCRNVYKSF--GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149
I RN+ + IL ++ I+ GE +GI+G SG+GKST+ K+I P+ G+V
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 150 IRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKE 209
I G A D ++G+V Q L + ++ +N+ S + ++L
Sbjct: 62 IDGHDLALA--DPNWLRRQVGVVLQDNVLLN-RSIIDNISLANPGMSVEKVIYAAKLAGA 118
Query: 210 ----NLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
+ G + + LSGG ++R+A+AR+++ + ++L++DE T+ LD
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP-------KILIFDEATSALD 171
Query: 266 PIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVV 325
+ V+ + + K + +++ H+ ST++ A D
Sbjct: 172 YESEHVIMRNMHKICKG-----------RTVIIIAHRLSTVKNA-D-------------- 205
Query: 326 IILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHE 359
R+I + +GKIV QG H+
Sbjct: 206 ----------------RIIVMEKGKIVEQG-KHK 222
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 135 bits (342), Expect = 2e-38
Identities = 70/280 (25%), Positives = 115/280 (41%), Gaps = 56/280 (20%)
Query: 96 NVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKR 155
K G + V F++ + ++GP+G GKS L++IAG++ PD+GEV + G
Sbjct: 6 RAEKRLGNFRL--NVDFEM-GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADI 62
Query: 156 AGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVG 215
L + IG V Q ALF L+V N+ + + + V+E +G
Sbjct: 63 TPLPPERR----GIGFVPQDYALFPHLSVYRNIAY---GLRNVERVERDRRVREMAEKLG 115
Query: 216 LKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDL 275
+ + DR P+ LSGG ++RVALAR+++ +LL DEP + +D V+ +
Sbjct: 116 IAHLLDRKPARLSGGERQRVALARALVIQP-------RLLLLDEPLSAVDLKTKGVLMEE 168
Query: 276 IRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAVAPDK 335
+R V ++ + + VTH D
Sbjct: 169 LRFVQREFDV---------PILHVTHDLIEAAMLAD------------------------ 195
Query: 336 EVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFASGS 375
+ + G+IV +G E S+ N V +F S
Sbjct: 196 ------EVAVMLNGRIVEKGKLKELFSAKNGEVAEFLSAR 229
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 63.5 bits (153), Expect = 1e-12
Identities = 20/205 (9%), Positives = 38/205 (18%), Gaps = 47/205 (22%)
Query: 120 VGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALF 179
+ I G G GK+T++K I L + + R G +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETK-------KRTGFRIITTEGK 55
Query: 180 DSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALAR 239
+ + S + Q E A
Sbjct: 56 KKIFSSKFFTSKKLVGSYGVNVQ---------------------YFEELAIPILERAYRE 94
Query: 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVV 299
+ +V++ DE + V
Sbjct: 95 AKKDR-------RKVIIIDEIGKMELFSKKFRDLVRQIMHDPNV-----------NVVAT 136
Query: 300 THQHSTIRRAVDRLCLFQIFGHIDV 324
+ I++
Sbjct: 137 IPIRDVHPLV-KEIRRLPGAVLIEL 160
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.3 bits (90), Expect = 5e-04
Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 14/86 (16%)
Query: 228 SGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGL 287
SGG K ALA ++ + S + DE A LD + IR
Sbjct: 334 SGGEKTVAALALLFAINSYQPS---PFFVLDEVDAALDITNVQRIAAYIRRHRNPD---- 386
Query: 288 ANPGNIASYVVVTHQHSTIRRAVDRL 313
++V++ +++ ++ D L
Sbjct: 387 ------LQFIVISLKNTMFEKS-DAL 405
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.9 bits (84), Expect = 0.002
Identities = 23/161 (14%), Positives = 46/161 (28%), Gaps = 6/161 (3%)
Query: 120 VGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALF 179
V + GP G GK+T++ + +L V G + G + + +
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKSSGVPV--DGFYTEEVRQGGRRIGFDVVTLSGTRGPL 61
Query: 180 DSLTVRENVGFLLYE--NSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVAL 237
+ + G + +L L + + K +
Sbjct: 62 SRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFS 121
Query: 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRS 278
I S ++L P P+A +VE++
Sbjct: 122 QLFIQAVRQTLSTPGTIILGTIPVPKGKPLA--LVEEIRNR 160
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 382 | |||
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.88 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.72 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.34 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.31 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.91 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.81 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 98.01 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 97.91 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.88 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 97.8 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.74 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.5 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.47 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.43 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.42 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.37 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.31 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.29 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.21 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 97.18 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.18 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.17 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 97.1 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.1 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 97.09 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 97.08 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 97.04 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 97.0 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.98 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.98 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.97 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.96 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.95 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.79 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.79 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.78 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.7 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.66 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.65 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 96.65 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 96.64 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 96.64 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 96.64 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.62 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 96.58 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.58 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 96.57 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 96.56 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 96.55 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 96.53 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 96.52 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.5 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 96.5 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 96.46 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 96.44 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.42 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 96.41 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 96.37 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.32 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 96.3 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 96.28 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.27 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 96.24 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 96.2 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 96.18 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 96.15 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.13 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 96.12 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 96.11 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 96.1 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 96.1 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 96.06 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 96.04 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 95.99 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.97 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 95.94 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.87 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 95.87 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 95.86 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 95.84 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.83 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 95.83 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 95.83 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 95.78 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.76 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 95.74 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 95.73 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.7 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 95.69 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 95.68 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 95.56 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 95.52 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 95.52 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 95.49 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 95.49 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.48 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 95.47 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 95.42 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 95.4 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.4 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.4 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 95.37 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 95.35 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 95.34 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 95.34 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 95.33 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 95.32 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.31 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 95.3 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 95.29 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 95.26 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.25 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 95.13 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 95.12 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 95.1 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 95.09 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 95.06 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 95.04 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 94.99 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 94.95 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 94.94 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 94.94 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 94.92 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 94.91 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 94.91 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 94.89 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 94.88 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 94.88 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 94.86 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 94.85 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 94.85 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 94.84 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 94.83 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 94.8 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 94.77 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 94.76 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 94.73 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 94.7 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 94.66 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 94.64 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 94.56 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 94.56 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 94.55 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 94.5 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 94.5 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 94.43 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 94.43 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 94.4 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 94.37 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 94.35 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 94.33 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 94.29 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 94.28 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 94.24 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 94.24 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 94.23 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 94.22 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 94.22 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 94.21 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.19 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 94.06 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 94.06 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 94.05 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 94.03 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 94.01 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 93.96 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 93.94 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 93.89 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 93.89 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 93.88 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 93.87 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 93.83 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 93.83 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.81 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 93.8 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 93.67 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 93.63 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 93.59 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 93.58 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 93.54 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.43 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 93.29 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 93.26 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 93.25 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 93.22 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 93.21 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 93.13 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 93.06 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 92.82 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 92.58 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 92.33 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 92.26 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 92.22 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 92.15 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 91.94 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 91.69 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 91.68 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 91.51 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 91.3 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 91.14 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 91.02 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 90.73 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 90.62 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 90.38 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 90.37 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 90.37 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 90.18 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 89.77 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 89.57 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 89.06 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 88.0 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 87.57 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 87.55 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 87.43 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 87.4 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 87.29 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 86.98 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 86.73 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 86.62 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 85.37 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 85.23 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 85.1 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 84.73 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 84.59 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 83.62 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 83.18 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 83.02 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 82.19 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 81.89 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 81.7 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 81.05 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 80.97 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 80.87 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1.7e-66 Score=489.76 Aligned_cols=230 Identities=32% Similarity=0.533 Sum_probs=206.8
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
|+++||+|+||+.++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.... .. +++|||
T Consensus 7 I~v~nlsk~yg~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~-~~---~r~ig~ 82 (239)
T d1v43a3 7 VKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLP-PK---DRNISM 82 (239)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC-GG---GGTEEE
T ss_pred EEEEEEEEEECCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCC-cc---cceEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999987542 22 236999
Q ss_pred EecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCC
Q 016804 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~ 251 (382)
|||++.+|+++||+||+.|+... .+.++++.++++.++++.++|+++.+++|.+|||||||||+|||||+. +
T Consensus 83 v~Q~~~l~~~ltv~enl~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~-------~ 154 (239)
T d1v43a3 83 VFQSYAVWPHMTVYENIAFPLKI-KKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVV-------E 154 (239)
T ss_dssp EEC------CCCHHHHHHTTCC---CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTT-------C
T ss_pred EeechhhcccchHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhcc-------C
Confidence 99999999999999999997643 457888899999999999999999999999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhcc
Q 016804 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGA 330 (382)
Q Consensus 252 P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~ 330 (382)
|+||||||||+||||.++.+++++|++++++ | +|+|+||||++++.++||||
T Consensus 155 P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g----------~tii~vTHd~~~a~~~~dri----------------- 207 (239)
T d1v43a3 155 PDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLK----------VTTIYVTHDQVEAMTMGDRI----------------- 207 (239)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHT----------CEEEEEESCHHHHHHHCSEE-----------------
T ss_pred CCceeecCCcccCCHHHHHHHHHHHHHHHHhcC----------CeEEEEeCCHHHHHHhCCEE-----------------
Confidence 9999999999999999999999999999766 5 69999999999999999988
Q ss_pred CCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHc
Q 016804 331 VAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFAS 373 (382)
Q Consensus 331 ~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~ 373 (382)
++|++|+|+++|++++++ ++.++++++|+.
T Consensus 208 -------------~vm~~G~iv~~G~~~el~~~P~~~~~~~~lg 238 (239)
T d1v43a3 208 -------------AVMNRGQLLQIGSPTEVYLRPNSVFVATFIG 238 (239)
T ss_dssp -------------EEEETTEEEEEECHHHHHHCCSBHHHHHHSS
T ss_pred -------------EEEECCEEEEEcCHHHHHhCCCCHHHHHhhC
Confidence 999999999999999975 678899999873
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=1.9e-66 Score=489.90 Aligned_cols=234 Identities=33% Similarity=0.532 Sum_probs=214.2
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhh--hccce
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE--ISGLR 168 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~--~~~~~ 168 (382)
.|+++||+|+||+.++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++........ ..+++
T Consensus 3 ~i~v~nl~k~yg~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r~ 82 (240)
T d1g2912 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRD 82 (240)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSS
T ss_pred cEEEEeEEEEECCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhccccccc
Confidence 4899999999999999999999999999999999999999999999999999999999999999754322211 12346
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 016804 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (382)
Q Consensus 169 Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~ 248 (382)
||||||++.||+.+||+||+.+++..+ +.+.++.++++.++++.++|+++.+++|++|||||||||+|||||+.
T Consensus 83 ig~v~Q~~~L~~~ltV~eni~~~~~~~-~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~----- 156 (240)
T d1g2912 83 IAMVFQSYALYPHMTVYDNIAFPLKLR-KVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVR----- 156 (240)
T ss_dssp EEEECSCCCCCTTSCHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHT-----
T ss_pred ceecccchhhcchhhhhHhhhhhHHHc-CCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhc-----
Confidence 999999999999999999999987544 46788889999999999999999999999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheeh
Q 016804 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVII 327 (382)
Q Consensus 249 a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~ 327 (382)
+|+||||||||+|||+.++..++++|++++++ | +|+|+||||++++.++||||
T Consensus 157 --~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g----------~tvi~vTHd~~~~~~~~drv-------------- 210 (240)
T d1g2912 157 --KPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLG----------VTTIYVTHDQVEAMTMGDRI-------------- 210 (240)
T ss_dssp --CCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHT----------CEEEEEESCHHHHHHHCSEE--------------
T ss_pred --CCCEEEecCCCcccCHHHHHHHHHHHHHHHhccC----------CEEEEEcCCHHHHHHhCCEE--------------
Confidence 69999999999999999999999999999876 6 69999999999999999988
Q ss_pred hccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHH
Q 016804 328 LGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFA 372 (382)
Q Consensus 328 ~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~ 372 (382)
++|++|+|++.|+++|++ ++.++++++|+
T Consensus 211 ----------------~vm~~G~iv~~G~~~el~~~P~~~~~~~fi 240 (240)
T d1g2912 211 ----------------AVMNRGVLQQVGSPDEVYDKPANTFVAGFI 240 (240)
T ss_dssp ----------------EEEETTEEEEEECHHHHHHSCSBHHHHHHS
T ss_pred ----------------EEEECCEEEEEcCHHHHHhCCCCHHHHHhC
Confidence 999999999999999975 67899999884
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=4.8e-66 Score=487.41 Aligned_cols=234 Identities=37% Similarity=0.555 Sum_probs=212.8
Q ss_pred eEEEEeEEEEe--CCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChh-hhccc
Q 016804 91 LIDCRNVYKSF--GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE-EISGL 167 (382)
Q Consensus 91 ~I~~~nvs~~y--g~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~-~~~~~ 167 (382)
.|+++||+|+| |+.++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++....... ...++
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr 82 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEeEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhc
Confidence 38999999999 5678999999999999999999999999999999999999999999999999986432111 11234
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 016804 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (382)
Q Consensus 168 ~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~ 247 (382)
+||||||++.|||++||+|||+|++. ..+.++++.++++.++++.+||+++.+++|++|||||||||+|||||++
T Consensus 83 ~ig~vfQ~~~L~p~ltv~eni~~~l~-~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~---- 157 (242)
T d1oxxk2 83 KIGMVFQTWALYPNLTAFENIAFPLT-NMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVK---- 157 (242)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGT-TSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT----
T ss_pred cceEEeccccccccccHHHHhhhhhH-hhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHHhHHhh----
Confidence 69999999999999999999999875 3457888889999999999999999999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchhee
Q 016804 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVI 326 (382)
Q Consensus 248 ~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~ 326 (382)
+|++|||||||++||+.++.+++++|++++++ | +|+|+||||++++.++||||
T Consensus 158 ---~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g----------~tvi~vTHd~~~~~~~~dri------------- 211 (242)
T d1oxxk2 158 ---DPSLLLLDEPFSNLDARMRDSARALVKEVQSRLG----------VTLLVVSHDPADIFAIADRV------------- 211 (242)
T ss_dssp ---CCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHC----------CEEEEEESCHHHHHHHCSEE-------------
T ss_pred ---cccceeecCCccCCCHHHHHHHHHHHHHHHhccC----------CEEEEEECCHHHHHHhCCEE-------------
Confidence 69999999999999999999999999999766 5 69999999999999999988
Q ss_pred hhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHH
Q 016804 327 ILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFA 372 (382)
Q Consensus 327 ~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~ 372 (382)
++|++|+|++.|++++++ ++.++++.+|+
T Consensus 212 -----------------~vm~~G~iv~~g~~~el~~~P~~~~~~~fl 241 (242)
T d1oxxk2 212 -----------------GVLVKGKLVQVGKPEDLYDNPVSIQVASLI 241 (242)
T ss_dssp -----------------EEEETTEEEEEECHHHHHHSCSSHHHHHHH
T ss_pred -----------------EEEECCEEEEEcCHHHHHhCCCCHHHHhcc
Confidence 999999999999999976 57899999886
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.8e-66 Score=486.52 Aligned_cols=229 Identities=33% Similarity=0.540 Sum_probs=173.4
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
|+++||+|+||+.++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.... . .+++|||
T Consensus 1 Iev~nv~k~yg~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~-~---~~r~ig~ 76 (232)
T d2awna2 1 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTP-P---AERGVGM 76 (232)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSC-G---GGTCEEE
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCc-h---hhceeee
Confidence 68999999999999999999999999999999999999999999999999999999999999986542 1 2346999
Q ss_pred EecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCC
Q 016804 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~ 251 (382)
|||++.+|+.+||+||+.|+... .+.++++.++++.++++.++|.++.+++|++|||||||||+|||||+. +
T Consensus 77 v~Q~~~l~~~~tv~eni~~~~~~-~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~-------~ 148 (232)
T d2awna2 77 VFQSYALYPHLSVAENMSFGLKL-AGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVA-------E 148 (232)
T ss_dssp ECSSCCC----------------------CHHHHHHHHHHHHC---------------------CHHHHHHT-------C
T ss_pred eccccccccchhHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhc-------C
Confidence 99999999999999999998643 345667788899999999999999999999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhcc
Q 016804 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGA 330 (382)
Q Consensus 252 P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~ 330 (382)
|++|||||||+||||.++.+++++|+++.++ | +|+|+||||++++.++|||+
T Consensus 149 P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g----------~tii~vTHd~~~a~~~~dri----------------- 201 (232)
T d2awna2 149 PSVFLLDEPLSNLDAALRVQMRIEISRLHKRLG----------RTMIYVTHDQVEAMTLADKI----------------- 201 (232)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSC----------CEEEEEESCHHHHHHHCSEE-----------------
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEE-----------------
Confidence 9999999999999999999999999999766 5 69999999999999999988
Q ss_pred CCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHH
Q 016804 331 VAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFA 372 (382)
Q Consensus 331 ~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~ 372 (382)
++|++|+|++.|++++++ .+.++++++|+
T Consensus 202 -------------~vm~~G~iv~~G~~~el~~~P~~~~v~~fl 231 (232)
T d2awna2 202 -------------VVLDAGRVAQVGKPLELYHYPADRFVAGFI 231 (232)
T ss_dssp -------------EEEETTEEEEEECHHHHHHSCSBHHHHHHS
T ss_pred -------------EEEECCEEEEEeCHHHHHhCCCCHHHHHhc
Confidence 999999999999999976 57889998886
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.2e-66 Score=487.52 Aligned_cols=233 Identities=33% Similarity=0.558 Sum_probs=210.7
Q ss_pred eEEEEeEEEEeCCe----eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhh-c
Q 016804 91 LIDCRNVYKSFGEK----HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEI-S 165 (382)
Q Consensus 91 ~I~~~nvs~~yg~~----~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~-~ 165 (382)
||+++||+|+|+.. ++|+||||+|++||++||+||||||||||+|+|+|+.+|++|+|.++|+++......... .
T Consensus 1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~ 80 (240)
T d3dhwc1 1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80 (240)
T ss_dssp CEEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHH
T ss_pred CEEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhh
Confidence 68999999999643 689999999999999999999999999999999999999999999999998765322211 1
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCC
Q 016804 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (382)
Q Consensus 166 ~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~ 245 (382)
+++||||||++.+|+.+||+||+.+++.. .+.++++.++++.++|+.+||+++.+++|.+|||||||||+|||||+.
T Consensus 81 rr~ig~VfQ~~~l~~~~tv~eni~~~l~~-~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~-- 157 (240)
T d3dhwc1 81 RRQIGMIFQHFNLLSSRTVFGNVALPLEL-DNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALAS-- 157 (240)
T ss_dssp HHHEEECCSSCCCCTTSBHHHHHHHHHHT-TTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHT--
T ss_pred hccccccccccccCCCccHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhhcc--
Confidence 23699999999999999999999998754 346777888999999999999999999999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchh
Q 016804 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDV 324 (382)
Q Consensus 246 ~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~ 324 (382)
+|+||||||||+|||+.++.+++++|++++++ | +|+|+||||++++..+||||
T Consensus 158 -----~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g----------~tvi~vTHdl~~~~~~~dri----------- 211 (240)
T d3dhwc1 158 -----NPKVLLCDEATSALDPATTRSILELLKDINRRLG----------LTILLITHEMDVVKRICDCV----------- 211 (240)
T ss_dssp -----CCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHC----------CEEEEEBSCHHHHHHHCSEE-----------
T ss_pred -----CCCeEEeccccccCCHHHhhHHHHHHHHHHhccC----------CEEEEEcCCHHHHHHhCCEE-----------
Confidence 69999999999999999999999999999876 6 69999999999999999988
Q ss_pred eehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHH
Q 016804 325 VIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQF 371 (382)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~ 371 (382)
++|++|+|++.|++++++ ++.++++++|
T Consensus 212 -------------------~vl~~G~iv~~G~~~ei~~~P~~~~t~~F 240 (240)
T d3dhwc1 212 -------------------AVISNGELIEQDTVSEVFSHPKTPLAQKF 240 (240)
T ss_dssp -------------------EEEETTEEEEEEETTTTTCSSCCTTTTCC
T ss_pred -------------------EEEECCEEEEECCHHHHHhCCCChHHcCC
Confidence 999999999999999986 5788887664
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=6.9e-65 Score=484.20 Aligned_cols=239 Identities=34% Similarity=0.554 Sum_probs=216.2
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChh--------
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE-------- 162 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~-------- 162 (382)
.|+++||+|+||+.++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.......
T Consensus 2 ~Lev~nl~k~yg~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~~ 81 (258)
T d1b0ua_ 2 KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADK 81 (258)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCH
T ss_pred eEEEEEEEEEECCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhcccccH
Confidence 489999999999999999999999999999999999999999999999999999999999999985432111
Q ss_pred ---hhccceEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcc-cccCCCCCCChHHHHHHHHH
Q 016804 163 ---EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALA 238 (382)
Q Consensus 163 ---~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~-~~~~~~~~LSGGqrQRVaIA 238 (382)
...+++||||||++.+|+.+||+||+.++.....+.+..+..+++.++++.++|.+ ..+++|.+|||||||||+||
T Consensus 82 ~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~iA 161 (258)
T d1b0ua_ 82 NQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIA 161 (258)
T ss_dssp HHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHH
T ss_pred hHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHHHHH
Confidence 11233699999999999999999999997655566778888899999999999976 46889999999999999999
Q ss_pred HHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccc
Q 016804 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQI 318 (382)
Q Consensus 239 rAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~ 318 (382)
|||+. +|++|||||||+|||+.++.+++++|++++++| +|+|+||||++++.++||||
T Consensus 162 raL~~-------~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g----------~til~vtHdl~~~~~~adri----- 219 (258)
T d1b0ua_ 162 RALAM-------EPDVLLFDEPTSALDPELVGEVLRIMQQLAEEG----------KTMVVVTHEMGFARHVSSHV----- 219 (258)
T ss_dssp HHHHT-------CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTT----------CCEEEECSCHHHHHHHCSEE-----
T ss_pred HHHhc-------CCCEEEeccccccCCHHHHHHHHHhhhhhcccC----------CceEEEeCCHHHHHHhCCEE-----
Confidence 99997 699999999999999999999999999999887 59999999999999999988
Q ss_pred cccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHHcCCC
Q 016804 319 FGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASGSL 376 (382)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~~~ 376 (382)
++|++|+|+++|+++|++ ++.++++++|+.|++
T Consensus 220 -------------------------~vm~~G~iv~~g~~~ev~~~P~~~~~~~ll~~~l 253 (258)
T d1b0ua_ 220 -------------------------IFLHQGKIEEEGDPEQVFGNPQSPRLQQFLKGSL 253 (258)
T ss_dssp -------------------------EEEETTEEEEEECHHHHHHSCCSHHHHHHHHHHH
T ss_pred -------------------------EEEECCEEEEEcCHHHHHhCCCCHHHHHHHhCcc
Confidence 999999999999999976 678999999987643
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=1.3e-64 Score=474.12 Aligned_cols=227 Identities=30% Similarity=0.560 Sum_probs=205.2
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
||+++||+|+|++ .+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.... .. +++||
T Consensus 1 mi~v~nlsk~y~~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~-~~---~r~ig 75 (229)
T d3d31a2 1 MIEIESLSRKWKN-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLS-PE---KHDIA 75 (229)
T ss_dssp CEEEEEEEEECSS-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSC-HH---HHTCE
T ss_pred CEEEEEEEEEeCC-EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccc-hh---Hhcce
Confidence 6899999999986 5899999999999999999999999999999999999999999999999986542 22 23699
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
||||++.||+++||+||+.|++.... ... .+++.++++.+++.++.+++|.+|||||||||+|||||++
T Consensus 76 ~v~Q~~~l~~~~tV~enl~~~~~~~~-~~~---~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~------- 144 (229)
T d3d31a2 76 FVYQNYSLFPHMNVKKNLEFGMRMKK-IKD---PKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVT------- 144 (229)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHC-CCC---HHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTS-------
T ss_pred eeccccccCccccHHHHHHHHHhhcc-ccH---HHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhc-------
Confidence 99999999999999999999876443 332 3468889999999999999999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhcc
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGA 330 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~ 330 (382)
+|++|||||||+||||.++.+++++|++++++.+ .|+|+||||++++.++||||
T Consensus 145 ~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g---------~tii~vtHd~~~~~~~~drv----------------- 198 (229)
T d3d31a2 145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNK---------LTVLHITHDQTEARIMADRI----------------- 198 (229)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTT---------CEEEEEESCHHHHHHHCSEE-----------------
T ss_pred cCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCC---------cEEEEEcCCHHHHHHhCCEE-----------------
Confidence 6999999999999999999999999999987632 69999999999999999988
Q ss_pred CCCCcccccccEEEEEeCCeEEEEecccccc-cCCCHHHHHHH
Q 016804 331 VAPDKEVFFIYRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFA 372 (382)
Q Consensus 331 ~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~-~~~~~~~~~~~ 372 (382)
++|++|+|+++|+++++. ++.++.+.+|+
T Consensus 199 -------------~vm~~G~iv~~g~~~el~~~P~~~~v~~fl 228 (229)
T d3d31a2 199 -------------AVVMDGKLIQVGKPEEIFEKPVEGRVASFV 228 (229)
T ss_dssp -------------EEESSSCEEEEECHHHHHSSCCTTHHHHHH
T ss_pred -------------EEEECCEEEEEcCHHHHHhCCCCHHHHhcc
Confidence 999999999999999975 56788888886
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1e-62 Score=464.67 Aligned_cols=235 Identities=28% Similarity=0.479 Sum_probs=208.9
Q ss_pred CcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccc
Q 016804 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (382)
Q Consensus 88 ~~~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~ 167 (382)
.+++|+++||+|+||+.++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++... +.....+.
T Consensus 3 sd~~Lev~~l~k~yg~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~-~~~~~~r~ 81 (240)
T d1ji0a_ 3 SDIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNK-PAHVINRM 81 (240)
T ss_dssp CSEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTC-CHHHHHHT
T ss_pred cceEEEEeeEEEEECCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccc-cHHHHHHh
Confidence 46789999999999999999999999999999999999999999999999999999999999999998764 33334445
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHc-CCcccccCCCCCCChHHHHHHHHHHHHhcCCC
Q 016804 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAV-GLKGVEDRLPSELSGGMKKRVALARSIIFDNT 246 (382)
Q Consensus 168 ~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~-gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~ 246 (382)
.|+|+||++.+|+.+||+||+.++.... ...+...+.++++++.+ ++.+..++++.+|||||||||+|||||++
T Consensus 82 gi~~~~q~~~l~~~ltv~en~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~--- 156 (240)
T d1ji0a_ 82 GIALVPEGRRIFPELTVYENLMMGAYNR--KDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMS--- 156 (240)
T ss_dssp TEEEECSSCCCCTTSBHHHHHHGGGTTC--CCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTT---
T ss_pred cccccCcccccCCcccHHHHHHHHHHhc--CCHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHHHHh---
Confidence 6999999999999999999998876433 23444556667777777 78889999999999999999999999997
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchhee
Q 016804 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVI 326 (382)
Q Consensus 247 ~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~ 326 (382)
+|++|||||||+||||.++.+++++|++++++| +|||++|||++++.++||||
T Consensus 157 ----~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g----------~til~~tH~l~~~~~~~drv------------- 209 (240)
T d1ji0a_ 157 ----RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEG----------TTILLVEQNALGALKVAHYG------------- 209 (240)
T ss_dssp ----CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTT----------CCEEEEESCHHHHHHHCSEE-------------
T ss_pred ----CCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHhCCEE-------------
Confidence 699999999999999999999999999998887 59999999999999999988
Q ss_pred hhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHHcC
Q 016804 327 ILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFASG 374 (382)
Q Consensus 327 ~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 374 (382)
++|++|+|+++|+++++.+ ++.+++.+-|
T Consensus 210 -----------------~vl~~G~iv~~g~~~el~~--~~~v~~~ylG 238 (240)
T d1ji0a_ 210 -----------------YVLETGQIVLEGKASELLD--NEMVRKAYLG 238 (240)
T ss_dssp -----------------EEEETTEEEEEEEHHHHHT--CHHHHHHHSC
T ss_pred -----------------EEEECCEEEEEcCHHHHhc--CHHHHHHhCc
Confidence 9999999999999999874 5677776644
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.2e-62 Score=461.41 Aligned_cols=220 Identities=36% Similarity=0.541 Sum_probs=195.1
Q ss_pred eEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhh--h
Q 016804 91 LIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE--I 164 (382)
Q Consensus 91 ~I~~~nvs~~yg~----~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~--~ 164 (382)
||+++||+|+|+. ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++........ .
T Consensus 1 mI~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~ 80 (230)
T d1l2ta_ 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (230)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchh
Confidence 6899999999953 248999999999999999999999999999999999999999999999999876533321 1
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhHhhc--CCCCHHHHHHHHHHHHHHcCCcc-cccCCCCCCChHHHHHHHHHHHH
Q 016804 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYEN--SKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALARSI 241 (382)
Q Consensus 165 ~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~--~~~~~~~~~~~v~~~L~~~gL~~-~~~~~~~~LSGGqrQRVaIArAL 241 (382)
++.+||||||++.+|+.+||+||+.+++... ...+.++..+++.++|+.++|.+ +.+++|.+|||||||||+|||||
T Consensus 81 r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAraL 160 (230)
T d1l2ta_ 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARAL 160 (230)
T ss_dssp HHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHH
T ss_pred hcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHhhh
Confidence 2235999999999999999999999987542 24567777888999999999975 68999999999999999999999
Q ss_pred hcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccccc
Q 016804 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGH 321 (382)
Q Consensus 242 ~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~ 321 (382)
++ +|+||||||||++||+.++.+++++|++++++.+ +|+|+||||++++ ++||||
T Consensus 161 ~~-------~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g---------~tii~vTHd~~~a-~~~drv-------- 215 (230)
T d1l2ta_ 161 AN-------NPPIILADQPTGALDSKTGEKIMQLLKKLNEEDG---------KTVVVVTHDINVA-RFGERI-------- 215 (230)
T ss_dssp TT-------CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTC---------CEEEEECSCHHHH-TTSSEE--------
T ss_pred hc-------CCCEEEecCCccccCHHHHHHHHHHHHHHHHhhC---------CEEEEECCCHHHH-HhCCEE--------
Confidence 97 6999999999999999999999999999987632 6999999999987 689988
Q ss_pred chheehhccCCCCcccccccEEEEEeCCeEEEEecc
Q 016804 322 IDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMT 357 (382)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~ 357 (382)
++|++|+|+++|.+
T Consensus 216 ----------------------~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 216 ----------------------IYLKDGEVEREEKL 229 (230)
T ss_dssp ----------------------EEEETTEEEEEEEC
T ss_pred ----------------------EEEECCEEEEeccC
Confidence 99999999999964
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=8.5e-62 Score=461.68 Aligned_cols=237 Identities=29% Similarity=0.479 Sum_probs=207.8
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
.+|+++||+|+||+.++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++... +.....+..|
T Consensus 3 ~iL~v~nlsk~yg~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~-~~~~~~~~gi 81 (254)
T d1g6ha_ 3 EILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNK-EPAELYHYGI 81 (254)
T ss_dssp EEEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTC-CHHHHHHHTE
T ss_pred ceEEEEEEEEEECCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccch-hHHHHHHhcC
Confidence 379999999999999999999999999999999999999999999999999999999999999998764 3334444469
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhh------------cCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHH
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYE------------NSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVAL 237 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~------------~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaI 237 (382)
+|+||++.+|+.+||+||+.++... .....+++..+++.++++.+++.+..++++.+|||||||||+|
T Consensus 82 ~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~Qrv~i 161 (254)
T d1g6ha_ 82 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEI 161 (254)
T ss_dssp EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHH
T ss_pred CccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhCCcHHHHHHHH
Confidence 9999999999999999999886321 1112345566788899999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhcccc
Q 016804 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQ 317 (382)
Q Consensus 238 ArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~ 317 (382)
||||+. +|++|||||||+|||+.++.+++++|++++++| +|||+||||++++.++||||
T Consensus 162 AraL~~-------~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g----------~til~vsHdl~~~~~~~Drv---- 220 (254)
T d1g6ha_ 162 GRALMT-------NPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKG----------ITFLIIEHRLDIVLNYIDHL---- 220 (254)
T ss_dssp HHHHHT-------CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTT----------CEEEEECSCCSTTGGGCSEE----
T ss_pred HHHHHh-------CcCchhhcCCcccCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCcHHHHHHhCCEE----
Confidence 999997 699999999999999999999999999998877 69999999999999999988
Q ss_pred ccccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccC--CCHHHHHHHcC
Q 016804 318 IFGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSS--SNPIVQQFASG 374 (382)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~--~~~~~~~~~~~ 374 (382)
++|++|+|+++|+++|+... .++.+.+.+-|
T Consensus 221 --------------------------~vm~~G~iv~~g~~~e~~~~~~~~~~v~~~ylG 253 (254)
T d1g6ha_ 221 --------------------------YVMFNGQIIAEGRGEEEIKNVLSDPKVVEIYIG 253 (254)
T ss_dssp --------------------------EEEETTEEEEEEESHHHHHHHHHCHHHHHTTTT
T ss_pred --------------------------EEEeCCEEEEEecHHHHhhcccCCHHHHHccCc
Confidence 99999999999999885421 34556554433
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=1.7e-61 Score=455.52 Aligned_cols=226 Identities=32% Similarity=0.522 Sum_probs=205.6
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
.|++ ++.|+||+..+ ||||++. +|+++|+||||||||||+|+|+|+++|++|+|.++|+++..... .+++||
T Consensus 2 ~l~v-~~~k~~g~~~~--~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~----~~r~ig 73 (240)
T d2onka1 2 FLKV-RAEKRLGNFRL--NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPP----ERRGIG 73 (240)
T ss_dssp CEEE-EEEEEETTEEE--EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCT----TTSCCB
T ss_pred EEEE-EEEEEECCEEE--EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCH----HHcCce
Confidence 4778 68999998765 8999995 68999999999999999999999999999999999999876432 234699
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~ 250 (382)
||||++.+||++||+||+.|++. ..++.+.++++.++++.+||.++.+++|.+|||||||||+|||||++
T Consensus 74 ~v~Q~~~l~~~ltV~enl~~~l~---~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~------- 143 (240)
T d2onka1 74 FVPQDYALFPHLSVYRNIAYGLR---NVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVI------- 143 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCT---TSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTT-------
T ss_pred eeccchhhcccchhhHhhhhhhc---ccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhc-------
Confidence 99999999999999999999763 35677778899999999999999999999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
+|++|||||||+|||+.++..+++.|++++++ | +|+|+||||++++.++|||+
T Consensus 144 ~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g----------~tvi~vtHd~~~~~~~adri---------------- 197 (240)
T d2onka1 144 QPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFD----------VPILHVTHDLIEAAMLADEV---------------- 197 (240)
T ss_dssp CCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHT----------CCEEEEESCHHHHHHHCSEE----------------
T ss_pred cCCceEecCccccCCHHHHHHHHHHHHHHHHhcC----------CeEEEEeCCHHHHHHhCCEE----------------
Confidence 69999999999999999999999999999876 5 69999999999999999988
Q ss_pred cCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHHcC
Q 016804 330 AVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFASG 374 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 374 (382)
++|++|+|++.|+++++.++.++.+.+|+.+
T Consensus 198 --------------~vm~~G~ii~~G~~~el~~~~~~~v~~fl~~ 228 (240)
T d2onka1 198 --------------AVMLNGRIVEKGKLKELFSAKNGEVAEFLSA 228 (240)
T ss_dssp --------------EEEETTEEEEEECHHHHHHSCCSSHHHHGGG
T ss_pred --------------EEEECCEEEEEecHHHHhcCCCHHHHHHhCc
Confidence 9999999999999999987778888888764
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=6.8e-60 Score=444.76 Aligned_cols=219 Identities=28% Similarity=0.493 Sum_probs=202.4
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
|+++||+|+||++++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++... ... .+.++||
T Consensus 3 I~v~nl~k~yg~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~--~~~-~~~~i~~ 79 (238)
T d1vpla_ 3 VVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE--PHE-VRKLISY 79 (238)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTC--HHH-HHTTEEE
T ss_pred EEEEeEEEEECCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccC--hHH-HHhhEeE
Confidence 8899999999999999999999999999999999999999999999999999999999999997642 222 2346999
Q ss_pred EecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCC
Q 016804 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~ 251 (382)
|||++.+|+.+|+.||+.+....+ +.+..+..+.++.+++.++|++..++++.+|||||||||+|||||++ +
T Consensus 80 vpq~~~~~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~-------~ 151 (238)
T d1vpla_ 80 LPEEAGAYRNMQGIEYLRFVAGFY-ASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMV-------N 151 (238)
T ss_dssp ECTTCCCCTTSBHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTT-------C
T ss_pred eeeccccCCCccHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhc-------C
Confidence 999999999999999998876443 45677788889999999999999999999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhccC
Q 016804 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILGAV 331 (382)
Q Consensus 252 P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~~~ 331 (382)
|++|||||||+||||.++.+++++|++++++| +|||++|||++++..+||||
T Consensus 152 p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g----------~tii~~tH~l~~~~~~~drv------------------ 203 (238)
T d1vpla_ 152 PRLAILDEPTSGLDVLNAREVRKILKQASQEG----------LTILVSSHNMLEVEFLCDRI------------------ 203 (238)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHTT----------CEEEEEECCHHHHTTTCSEE------------------
T ss_pred CCEEEecCCCCCCCHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEE------------------
Confidence 99999999999999999999999999999887 59999999999999999988
Q ss_pred CCCcccccccEEEEEeCCeEEEEecccccc
Q 016804 332 APDKEVFFIYRLIFLYEGKIVWQGMTHEFT 361 (382)
Q Consensus 332 ~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~ 361 (382)
++|++|+|++.|+++++.
T Consensus 204 ------------~vl~~G~iv~~g~~~el~ 221 (238)
T d1vpla_ 204 ------------ALIHNGTIVETGTVEELK 221 (238)
T ss_dssp ------------EEEETTEEEEEEEHHHHH
T ss_pred ------------EEEECCEEEEEcCHHHHH
Confidence 999999999999999985
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.5e-57 Score=429.45 Aligned_cols=218 Identities=30% Similarity=0.517 Sum_probs=182.1
Q ss_pred EEEEeEEEEeC--CeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 92 IDCRNVYKSFG--EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 92 I~~~nvs~~yg--~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
|+++||+|+|+ ++.+|+||||+|++||++||+||||||||||+++|+|+++|++|+|+|+|+++..+. ..++ +.+|
T Consensus 2 I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~-~~~l-r~~i 79 (241)
T d2pmka1 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALAD-PNWL-RRQV 79 (241)
T ss_dssp EEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSC-HHHH-HHHE
T ss_pred eEEEEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccc-hhhh-hceE
Confidence 78999999994 467999999999999999999999999999999999999999999999999987653 3333 2369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-----------ccccCCCCCCChHHHHHHHHH
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-----------GVEDRLPSELSGGMKKRVALA 238 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-----------~~~~~~~~~LSGGqrQRVaIA 238 (382)
|||||++.+|+ .||+|||.++. ...+.++ +.++++.+++. ......+.+|||||||||+||
T Consensus 80 ~~v~Q~~~lf~-~Ti~eNi~~~~---~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalA 151 (241)
T d2pmka1 80 GVVLQDNVLLN-RSIIDNISLAN---PGMSVEK----VIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIA 151 (241)
T ss_dssp EEECSSCCCTT-SBHHHHHCTTS---TTCCHHH----HHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHH
T ss_pred EEEecccccCC-ccccccccccC---ccccHHH----HHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhh
Confidence 99999999997 59999998853 1233333 33344444442 234556789999999999999
Q ss_pred HHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccc
Q 016804 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQI 318 (382)
Q Consensus 239 rAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~ 318 (382)
|||++ +|+|||||||||+||+.++..+++.|+++.+ + +|+|+||||++.+. .||||
T Consensus 152 Ral~~-------~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~----------~Tvi~itH~l~~~~-~~D~i----- 207 (241)
T d2pmka1 152 RALVN-------NPKILIFDEATSALDYESEHVIMRNMHKICK-G----------RTVIIIAHRLSTVK-NADRI----- 207 (241)
T ss_dssp HHHTT-------CCSEEEECCCCSCCCHHHHHHHHHHHHHHHT-T----------SEEEEECSSGGGGT-TSSEE-----
T ss_pred hhhhc-------ccchhhhhCCccccCHHHHHHHHHHHHHHhC-C----------CEEEEEECCHHHHH-hCCEE-----
Confidence 99997 6999999999999999999999999999965 4 59999999999874 68877
Q ss_pred cccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCC-CHHH
Q 016804 319 FGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSS-NPIV 368 (382)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~-~~~~ 368 (382)
++|++|+|+++|++++++... +.+.
T Consensus 208 -------------------------~vl~~G~Iv~~G~~~ell~~~~~~y~ 233 (241)
T d2pmka1 208 -------------------------IVMEKGKIVEQGKHKELLSEPESLYS 233 (241)
T ss_dssp -------------------------EEEETTEEEEEECHHHHHHSTTCHHH
T ss_pred -------------------------EEEECCEEEEECCHHHHHhCCCCHHH
Confidence 999999999999988987543 3443
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=1.6e-58 Score=436.30 Aligned_cols=226 Identities=29% Similarity=0.528 Sum_probs=188.5
Q ss_pred eEEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 91 LIDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 91 ~I~~~nvs~~yg~-~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
||+++||+|+|++ +++|+||||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++..+..... +.+|
T Consensus 1 mle~knvsf~Y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~--r~~i 78 (242)
T d1mv5a_ 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENW--RSQI 78 (242)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCC--TTTC
T ss_pred CEEEEEEEEECCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHH--Hhhe
Confidence 6899999999954 679999999999999999999999999999999999999999999999999876543332 3369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCccccc-----------CCCCCCChHHHHHHHHH
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVED-----------RLPSELSGGMKKRVALA 238 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~-----------~~~~~LSGGqrQRVaIA 238 (382)
|||||++.+|+. ||+||+.++.. .....+. +.++++.+++.++.. ..+.+|||||||||+||
T Consensus 79 ~~v~Q~~~lf~~-ti~eNi~~~~~--~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iA 151 (242)
T d1mv5a_ 79 GFVSQDSAIMAG-TIRENLTYGLE--GDYTDED----LWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIA 151 (242)
T ss_dssp CEECCSSCCCCE-EHHHHTTSCTT--SCSCHHH----HHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHH
T ss_pred EEEccccccCCc-chhhheecccc--cccchhh----HHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHH
Confidence 999999999985 99999987542 1123322 344455555543333 33467999999999999
Q ss_pred HHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccc
Q 016804 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQI 318 (382)
Q Consensus 239 rAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~ 318 (382)
|||++ +|+|||||||||+||+.++..+++.|+++.+ + +|+|+||||++.+.. ||||
T Consensus 152 Ral~~-------~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~----------~Tvi~itH~l~~~~~-~D~i----- 207 (242)
T d1mv5a_ 152 RAFLR-------NPKILMLDEATASLDSESESMVQKALDSLMK-G----------RTTLVIAHRLSTIVD-ADKI----- 207 (242)
T ss_dssp HHHHH-------CCSEEEEECCSCSSCSSSCCHHHHHHHHHHT-T----------SEEEEECCSHHHHHH-CSEE-----
T ss_pred HHHhc-------CCCEEEecCCccccCHHHHHHHHHHHHHHcC-C----------CEEEEEECCHHHHHh-CCEE-----
Confidence 99998 5999999999999999999999999999975 4 599999999998864 8877
Q ss_pred cccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHHcCC
Q 016804 319 FGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFASGS 375 (382)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 375 (382)
++|++|+|+++|+++|++.. ++..++++...
T Consensus 208 -------------------------~vl~~G~iv~~G~~~eLl~~-~~~y~~l~~~Q 238 (242)
T d1mv5a_ 208 -------------------------YFIEKGQITGSGKHNELVAT-HPLYAKYVSEQ 238 (242)
T ss_dssp -------------------------EEEETTEECCCSCHHHHHHH-CHHHHHHHHCC
T ss_pred -------------------------EEEECCEEEEECCHHHHHhC-ChHHHHHHHHH
Confidence 99999999999998888754 67777777643
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1e-57 Score=432.87 Aligned_cols=228 Identities=26% Similarity=0.454 Sum_probs=187.4
Q ss_pred eEEEEeEEEEeCC---eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccc
Q 016804 91 LIDCRNVYKSFGE---KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (382)
Q Consensus 91 ~I~~~nvs~~yg~---~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~ 167 (382)
.|+++||+|+|++ +.+|+||||+|++||++|||||||||||||+++|+|+++|++|+|+++|+++..+. .... +.
T Consensus 11 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~-~~~~-r~ 88 (251)
T d1jj7a_ 11 LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYE-HRYL-HR 88 (251)
T ss_dssp CEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBC-HHHH-HH
T ss_pred eEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhh-hHHH-HH
Confidence 3999999999975 35999999999999999999999999999999999999999999999999987643 2222 33
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHH-----HHHHHHHc--CCcccccCCCCCCChHHHHHHHHHHH
Q 016804 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISEL-----VKENLAAV--GLKGVEDRLPSELSGGMKKRVALARS 240 (382)
Q Consensus 168 ~Ig~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~-----v~~~L~~~--gL~~~~~~~~~~LSGGqrQRVaIArA 240 (382)
+|+||||++.+|+ .||+||+.++.... ....+..+. ..+.++.+ +++...++.+.+|||||||||+||||
T Consensus 89 ~i~~v~Q~~~lf~-~tv~eni~~g~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARa 165 (251)
T d1jj7a_ 89 QVAAVGQEPQVFG-RSLQENIAYGLTQK--PTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARA 165 (251)
T ss_dssp HEEEECSSCCCCS-SBHHHHHHCSCSSC--CCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHH
T ss_pred HhhhccccccccC-cchhhhhhhhhccc--chHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeec
Confidence 6999999999997 59999999864221 222222111 12334444 45566778889999999999999999
Q ss_pred HhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEccCHHHHHHhhchhcccccc
Q 016804 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIF 319 (382)
Q Consensus 241 L~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~-g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~ 319 (382)
|++ +|+||||||||++||+.++.++++.|+++.++ + +|+|+||||++.+. .||||
T Consensus 166 l~~-------~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~----------~Tvi~itH~l~~~~-~aDrI------ 221 (251)
T d1jj7a_ 166 LIR-------KPCVLILDDATSALDANSQLQVEQLLYESPERYS----------RSVLLITQHLSLVE-QADHI------ 221 (251)
T ss_dssp HTT-------CCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGG----------CEEEEECSCHHHHH-TCSEE------
T ss_pred ccc-------CCcEEEecCcCcccChhhHHHHHHHHHHHhhhcC----------CEEEEEeCCHHHHH-hCCEE------
Confidence 997 69999999999999999999999999998765 4 59999999999875 58877
Q ss_pred ccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHH
Q 016804 320 GHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFA 372 (382)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 372 (382)
++|++|+|+++|+++|++..... ..+++
T Consensus 222 ------------------------~vl~~G~iv~~Gt~~eLl~~~~~-y~~l~ 249 (251)
T d1jj7a_ 222 ------------------------LFLEGGAIREGGTHQQLMEKKGC-YWAMV 249 (251)
T ss_dssp ------------------------EEEETTEEEEEECHHHHHHHTSH-HHHHH
T ss_pred ------------------------EEEECCEEEEECCHHHHHhCCcH-HHHHh
Confidence 99999999999999998765443 34444
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=6.6e-56 Score=420.87 Aligned_cols=222 Identities=27% Similarity=0.446 Sum_probs=184.8
Q ss_pred EEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 92 IDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 92 I~~~nvs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
|+++||+|+|++ .++|+||||+|++||++|||||||||||||+++|+|+++|++|+|+++|+++.... .... +.+|
T Consensus 14 I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~-~~~~-r~~i 91 (253)
T d3b60a1 14 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYT-LASL-RNQV 91 (253)
T ss_dssp EEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBC-HHHH-HHTE
T ss_pred EEEEEEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhh-hhhh-hheE
Confidence 999999999965 46999999999999999999999999999999999999999999999999987653 3322 2359
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcC-----------CcccccCCCCCCChHHHHHHHHH
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVG-----------LKGVEDRLPSELSGGMKKRVALA 238 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~g-----------L~~~~~~~~~~LSGGqrQRVaIA 238 (382)
+||||++.+|+ .|+++|+.++.. ...+.++ +.++++.++ ++....+.+.+|||||||||+||
T Consensus 92 ~~v~Q~~~l~~-~ti~~n~~~~~~--~~~~~~~----i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiA 164 (253)
T d3b60a1 92 ALVSQNVHLFN-DTVANNIAYART--EEYSREQ----IEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIA 164 (253)
T ss_dssp EEECSSCCCCS-SBHHHHHHTTTT--SCCCHHH----HHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHH
T ss_pred EEEeeccccCC-cchhhhhhhcCc--ccCCHHH----HHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHH
Confidence 99999999997 599999988632 2233333 334444444 44445566789999999999999
Q ss_pred HHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccc
Q 016804 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQI 318 (382)
Q Consensus 239 rAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~ 318 (382)
|||++ +|+|||||||||+||+.++..+++.|+++.+ + +|+|+||||++.+. .||||
T Consensus 165 Ral~~-------~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~----------~Tvi~itH~l~~~~-~~D~v----- 220 (253)
T d3b60a1 165 RALLR-------DSPILILDEATSALDTESERAIQAALDELQK-N----------RTSLVIAHRLSTIE-QADEI----- 220 (253)
T ss_dssp HHHHH-------CCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-T----------SEEEEECSCGGGTT-TCSEE-----
T ss_pred HHHhc-------CCCEEEeccccccCCHHHHHHHHHHHHHhcc-C----------CEEEEEECCHHHHH-hCCEE-----
Confidence 99998 5999999999999999999999999999975 3 59999999999875 68877
Q ss_pred cccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHH
Q 016804 319 FGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFA 372 (382)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 372 (382)
++|++|+|+++|+++|++... +...+++
T Consensus 221 -------------------------~vl~~G~Iv~~G~~~eLl~~~-~~y~~l~ 248 (253)
T d3b60a1 221 -------------------------VVVEDGIIVERGTHSELLAQH-GVYAQLH 248 (253)
T ss_dssp -------------------------EEEETTEEEEEECHHHHHHHT-SSHHHHH
T ss_pred -------------------------EEEECCEEEEECCHHHHHhCC-cHHHHHH
Confidence 999999999999999987643 3444444
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=8.5e-56 Score=420.59 Aligned_cols=222 Identities=28% Similarity=0.461 Sum_probs=187.1
Q ss_pred EEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 92 IDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 92 I~~~nvs~~yg~--~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
|+++||+|+|++ +++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++..+.. ..+ +.+|
T Consensus 17 I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~-~~l-r~~i 94 (255)
T d2hyda1 17 IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLT-GSL-RNQI 94 (255)
T ss_dssp EEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCH-HHH-HHTE
T ss_pred EEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCH-HHh-hhee
Confidence 999999999965 569999999999999999999999999999999999999999999999999876532 222 2369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccC-----------CCCCCChHHHHHHHHH
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDR-----------LPSELSGGMKKRVALA 238 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~-----------~~~~LSGGqrQRVaIA 238 (382)
+||||++.+|+ .||+|||.++. ..... +++.++++.+++.++..+ .+.+||||||||++||
T Consensus 95 ~~v~Q~~~lf~-~Ti~eNi~~g~---~~~~~----~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iA 166 (255)
T d2hyda1 95 GLVQQDNILFS-DTVKENILLGR---PTATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIA 166 (255)
T ss_dssp EEECSSCCCCS-SBHHHHHGGGC---SSCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHH
T ss_pred eeeeccccCCC-CCHHHHHhccC---cCCCH----HHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHH
Confidence 99999999997 59999998863 11233 335667788877654433 3468999999999999
Q ss_pred HHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccc
Q 016804 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQI 318 (382)
Q Consensus 239 rAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~ 318 (382)
|||++ +|+|||||||||+||+.++..+++.|+++.+. +|+|+||||++.+. .||||
T Consensus 167 Ral~~-------~p~ililDEpts~LD~~t~~~i~~~l~~l~~~-----------~TvI~itH~~~~~~-~~D~i----- 222 (255)
T d2hyda1 167 RIFLN-------NPPILILDEATSALDLESESIIQEALDVLSKD-----------RTTLIVAHRLSTIT-HADKI----- 222 (255)
T ss_dssp HHHHH-------CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTT-----------SEEEEECSSGGGTT-TCSEE-----
T ss_pred HHHhc-------CCCEEEEeCccccCCHHHHHHHHHHHHHHhcC-----------CEEEEEeCCHHHHH-hCCEE-----
Confidence 99998 59999999999999999999999999998653 49999999999875 68877
Q ss_pred cccchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHHc
Q 016804 319 FGHIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFAS 373 (382)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 373 (382)
++|++|+|++.|+++|++... +..++++.
T Consensus 223 -------------------------i~l~~G~iv~~G~~~eLl~~~-~~y~~l~~ 251 (255)
T d2hyda1 223 -------------------------VVIENGHIVETGTHRELIAKQ-GAYEHLYS 251 (255)
T ss_dssp -------------------------EEEETTEEEEEECHHHHHHTT-SHHHHHHT
T ss_pred -------------------------EEEECCEEEEECCHHHHHhCC-cHHHHHHH
Confidence 999999999999999987643 44555543
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.1e-53 Score=397.29 Aligned_cols=228 Identities=24% Similarity=0.358 Sum_probs=191.6
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceE
Q 016804 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (382)
Q Consensus 90 ~~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~I 169 (382)
.+|+++||+++| +|++|||+|++||++||+||||||||||+++|+|+. |++|+|.++|+++..+. .... +...
T Consensus 2 ~il~~~dv~~~~----~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~-~~~~-~~~~ 74 (231)
T d1l7vc_ 2 IVMQLQDVAEST----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWS-ATKL-ALHR 74 (231)
T ss_dssp EEEEEEEECCTT----TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSC-HHHH-HHHE
T ss_pred eEEEEECcccCc----eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCC-HHHH-Hhhc
Confidence 579999998765 699999999999999999999999999999999986 68999999999876543 2222 2258
Q ss_pred EEEecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 170 g~V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
+|++|+.......++++++.+... . ....+.+.++++.+++.++.++++.+|||||||||+|||||++.++...
T Consensus 75 ~~~~~~~~~~~~~~v~~~~~~~~~--~----~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~ 148 (231)
T d1l7vc_ 75 AYLSQQQTPPFATPVWHYLTLHQH--D----KTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQAN 148 (231)
T ss_dssp EEECSCCCCCSSCBHHHHHHHHCS--C----TTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTC
T ss_pred eeeeccccCCccccHHHHhhhccc--h----hhHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccC
Confidence 999999876556799999987532 1 1224557888999999999999999999999999999999986321111
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccccchheehhc
Q 016804 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFGHIDVVIILG 329 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~~~~~~~~~~ 329 (382)
.+|+||||||||+|||+.++..++++|++++++| +|||+||||++++.++|||+
T Consensus 149 p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g----------~tii~vtHdl~~~~~~~dri---------------- 202 (231)
T d1l7vc_ 149 PAGQLLLLDEPMNSLDVAQQSALDKILSALCQQG----------LAIVMSSHDLNHTLRHAHRA---------------- 202 (231)
T ss_dssp TTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTT----------CEEEECCCCHHHHHHHCSBC----------------
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHHCCEE----------------
Confidence 2579999999999999999999999999998887 59999999999999999999
Q ss_pred cCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHH
Q 016804 330 AVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFA 372 (382)
Q Consensus 330 ~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 372 (382)
++|++|+|+++|+++|+++ ++.+.+.+
T Consensus 203 --------------~vl~~G~iv~~G~~~ev~~--~~~l~~~y 229 (231)
T d1l7vc_ 203 --------------WLLKGGKMLASGRREEVLT--PPNLAQAY 229 (231)
T ss_dssp --------------CBEETTEECCCSBHHHHSC--HHHHHHHH
T ss_pred --------------EEEECCEEEEECCHHHHhC--ChHHHHhh
Confidence 8999999999999999874 45555544
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=9.4e-50 Score=383.68 Aligned_cols=208 Identities=23% Similarity=0.381 Sum_probs=166.2
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEE
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~ 171 (382)
|+++|++ |+++++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++| +|+|
T Consensus 39 i~~~~~~--~~g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g---------------~i~~ 101 (281)
T d1r0wa_ 39 VSFSHLC--LVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG---------------RVSF 101 (281)
T ss_dssp -CHHHHH--HTTCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS---------------CEEE
T ss_pred EEEEEcC--CCCCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC---------------EEEE
Confidence 5555554 4678999999999999999999999999999999999999999999999987 3899
Q ss_pred EecCCCCCCCCCHHHHHHhhHhhcCCCCHHHHHHHHHHHHHHcCCc-----------ccccCCCCCCChHHHHHHHHHHH
Q 016804 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-----------GVEDRLPSELSGGMKKRVALARS 240 (382)
Q Consensus 172 V~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~L~~~gL~-----------~~~~~~~~~LSGGqrQRVaIArA 240 (382)
+||++.+|+. ||+||+.++.. ..... ..++++.+++. ....+.+.+|||||||||+||||
T Consensus 102 v~Q~~~l~~~-tv~eni~~~~~----~~~~~----~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARa 172 (281)
T d1r0wa_ 102 CSQFSWIMPG-TIKENIIFGVS----YDEYR----YKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARA 172 (281)
T ss_dssp ECSSCCCCSE-EHHHHHTTTSC----CCHHH----HHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHH
T ss_pred EeccccccCc-eeecccccccc----ccchH----HHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHH
Confidence 9999999985 99999987541 22222 22333333322 23345567899999999999999
Q ss_pred HhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchhccccccc
Q 016804 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLCLFQIFG 320 (382)
Q Consensus 241 L~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv~~~~~~~ 320 (382)
|++ +|+||||||||++||+.++..+++.+.....++ +|+|+|||+++.+ +.||||
T Consensus 173 L~~-------~p~illLDEPts~LD~~~~~~i~~~~~~~~~~~----------~tvi~itH~~~~l-~~aDrI------- 227 (281)
T d1r0wa_ 173 VYK-------DADLYLLDSPFGYLDVFTEEQVFESCVCKLMAN----------KTRILVTSKMEHL-RKADKI------- 227 (281)
T ss_dssp HHS-------CCSEEEEESCCCSSCHHHHHHHHHHCCCCCTTT----------SEEEEECSCHHHH-HTCSEE-------
T ss_pred HHh-------CccchhhcCccccCCHHHHHHHHHHHHHHhhCC----------CEEEEEechHHHH-HhCCEE-------
Confidence 997 599999999999999999998887543322333 5999999999876 578877
Q ss_pred cchheehhccCCCCcccccccEEEEEeCCeEEEEecccccccCCCHHHHHHHc
Q 016804 321 HIDVVIILGAVAPDKEVFFIYRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFAS 373 (382)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~ii~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 373 (382)
++|++|+|+++|+++|+......+...+..
T Consensus 228 -----------------------~vl~~G~i~~~Gt~~eL~~~~~~~~~~~~~ 257 (281)
T d1r0wa_ 228 -----------------------LILHQGSSYFYGTFSELQSLRPDFSSKLMG 257 (281)
T ss_dssp -----------------------EEEETTEEEEEECHHHHHHHCHHHHHHHHT
T ss_pred -----------------------EEEECCEEEEECCHHHHhccCcHHHHHHcC
Confidence 999999999999999987655455555553
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.2e-48 Score=358.58 Aligned_cols=190 Identities=22% Similarity=0.339 Sum_probs=162.1
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEE
Q 016804 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (382)
Q Consensus 91 ~I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig 170 (382)
.|+++||+|+|+ +++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.. .+.+++
T Consensus 2 ~lev~~ls~~y~-~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~-------~~~~i~ 73 (200)
T d1sgwa_ 2 KLEIRDLSVGYD-KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-------VKGKIF 73 (200)
T ss_dssp EEEEEEEEEESS-SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-------GGGGEE
T ss_pred eEEEEEEEEEeC-CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhH-------hcCcEE
Confidence 489999999996 579999999999999999999999999999999999999999999999998642 123699
Q ss_pred EEecCCCCCCCCCHHHHHHhhHhhcC-CCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 016804 171 LVFQSAALFDSLTVRENVGFLLYENS-KMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (382)
Q Consensus 171 ~V~Q~~~l~~~lTV~eni~~~~~~~~-~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a 249 (382)
|+||+..+++.+|+++|+.+....+. ..++ +++.++++.+++.++ ++++.+|||||||||+|||||+.
T Consensus 74 ~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~----~~~~~~l~~~~~~~~-~~~~~~LSgG~~qrv~ia~al~~------ 142 (200)
T d1sgwa_ 74 FLPEEIIVPRKISVEDYLKAVASLYGVKVNK----NEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLV------ 142 (200)
T ss_dssp EECSSCCCCTTSBHHHHHHHHHHHTTCCCCH----HHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTS------
T ss_pred EEeecccCCCCcCHHHHHHHHHHhcCCccCH----HHHHHHHHHcCCccc-ccccCcCCCcHHHHHHHHHHHhc------
Confidence 99999999999999999988654432 2222 335677888888664 56789999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 250 ~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+|++|||||||+|||+.++..+++.|.++.+++. +++|+++|++ .+||++
T Consensus 143 -~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~---------~~ii~~~~~l----~~~D~~ 192 (200)
T d1sgwa_ 143 -NAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKG---------IVIISSREEL----SYCDVN 192 (200)
T ss_dssp -CCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHS---------EEEEEESSCC----TTSSEE
T ss_pred -CCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCC---------EEEEEEechh----hhcchh
Confidence 6999999999999999999999999999876642 5666666765 478977
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.72 E-value=1.1e-19 Score=157.32 Aligned_cols=143 Identities=15% Similarity=0.058 Sum_probs=89.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEec-----CCCCCCCCCHHHHHHhhHh
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQ-----SAALFDSLTVRENVGFLLY 193 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q-----~~~l~~~lTV~eni~~~~~ 193 (382)
.++|+||||||||||+++|+|+++|+.|.+.+.+.+.... ..+.++..+ ...++. .+...+..+.
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-- 71 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPET-------KKRTGFRIITTEGKKKIFSS-KFFTSKKLVG-- 71 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC-------------CCEEEEEETTCCEEEEEE-TTCCCSSEET--
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHH-------HHhhhhhhhhhhHHHHHHhh-hhhhhhhhhh--
Confidence 3789999999999999999999999999999988653221 112222211 111110 0000000000
Q ss_pred hcCCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHH
Q 016804 194 ENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVE 273 (382)
Q Consensus 194 ~~~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~ 273 (382)
...... ...++|+|+++|.++++++.. +|++|++|||....+ ....+.
T Consensus 72 -~~~~~~----------------------~~~~~~~~~~~~~~l~~~~~~-------~~~vlllDE~~~~~~--~~~~~~ 119 (178)
T d1ye8a1 72 -SYGVNV----------------------QYFEELAIPILERAYREAKKD-------RRKVIIIDEIGKMEL--FSKKFR 119 (178)
T ss_dssp -TEEECH----------------------HHHHHHHHHHHHHHHHHHHHC-------TTCEEEECCCSTTGG--GCHHHH
T ss_pred -hhhcCc----------------------chhhhhhhhhHHHHHHHHHhc-------CCCceeecCCCccch--hhHHHH
Confidence 000111 112478999999999999986 699999999854433 344556
Q ss_pred HHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHhhchh
Q 016804 274 DLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (382)
Q Consensus 274 ~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~aDrv 313 (382)
+.+.++.+... .++|+++|+... ...+|++
T Consensus 120 ~~l~~~l~~~~---------~~il~~~h~~~~-~~~~~~i 149 (178)
T d1ye8a1 120 DLVRQIMHDPN---------VNVVATIPIRDV-HPLVKEI 149 (178)
T ss_dssp HHHHHHHTCTT---------SEEEEECCSSCC-SHHHHHH
T ss_pred HHHHHHhccCC---------CEEEEEEccHHH-HHhhceE
Confidence 66666554421 599999998654 4577877
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.31 E-value=3.6e-12 Score=118.81 Aligned_cols=75 Identities=29% Similarity=0.362 Sum_probs=60.7
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCH
Q 016804 224 PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQH 303 (382)
Q Consensus 224 ~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl 303 (382)
...+|+|||+...++..++.- ....+.++++|||-++|+|.....+.+.|++..++ .-+|++||..
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~---~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~-----------~QviitTHsp 282 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALM---EIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKH-----------TQFIVITHNK 282 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHT---TTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTT-----------SEEEEECCCT
T ss_pred hhhhhHHHhhHHHHHhhhhhh---hhccCchhhhhhccccCCHHHHHHHHHHHHHhccC-----------CEEEEEECCH
Confidence 468999999998887765321 13578999999999999999999999999998654 3799999998
Q ss_pred HHHHHhhchh
Q 016804 304 STIRRAVDRL 313 (382)
Q Consensus 304 ~~~~~~aDrv 313 (382)
..+. .+|++
T Consensus 283 ~~~~-~~d~~ 291 (308)
T d1e69a_ 283 IVME-AADLL 291 (308)
T ss_dssp TGGG-GCSEE
T ss_pred HHHH-hcccE
Confidence 7764 56766
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.81 E-value=4.4e-09 Score=100.61 Aligned_cols=75 Identities=24% Similarity=0.317 Sum_probs=59.0
Q ss_pred CCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHH
Q 016804 225 SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS 304 (382)
Q Consensus 225 ~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~ 304 (382)
..||||||.+++||-.|+.- ...++++++||||+++||+..+..+.++|.++...+ .-+|++||+..
T Consensus 331 ~~lSgGEk~~~~lal~lal~---~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~----------~Q~I~iTH~~~ 397 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAIN---SYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPD----------LQFIVISLKNT 397 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHH---TSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTT----------BEEEEECSCHH
T ss_pred hhhccchHHHHHHHHHHHHh---cCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCC----------CEEEEEeCCHH
Confidence 67899999998887544210 124678999999999999999999999998885433 36999999987
Q ss_pred HHHHhhchh
Q 016804 305 TIRRAVDRL 313 (382)
Q Consensus 305 ~~~~~aDrv 313 (382)
.+ ..||+.
T Consensus 398 ~~-~~ad~~ 405 (427)
T d1w1wa_ 398 MF-EKSDAL 405 (427)
T ss_dssp HH-TTCSEE
T ss_pred HH-HhcccE
Confidence 65 467876
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.01 E-value=7.3e-05 Score=67.24 Aligned_cols=47 Identities=19% Similarity=0.326 Sum_probs=35.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHHcCCCCCCCCCCceEEEEEccCHHHHH
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVED-LIRSVHKKGENGLANPGNIASYVVVTHQHSTIR 307 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~-lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~ 307 (382)
+..++|+||+..|=|+.....+.. +++.|.+.+ ..++++||..+...
T Consensus 114 ~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~----------~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 114 ENSLVLLDEVGRGTSSLDGVAIATAVAEALHERR----------AYTLFATHYFELTA 161 (224)
T ss_dssp TTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHT----------CEEEEECCCHHHHT
T ss_pred CCcEEeecccccCcchhhhcchHHHHHHHHhhcC----------cceEEeeechhhhh
Confidence 467999999999999988666544 455566655 47899999976543
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.88 E-value=5.6e-05 Score=68.37 Aligned_cols=47 Identities=19% Similarity=0.128 Sum_probs=35.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHHcCCCCCCCCCCceEEEEEccCHHHH
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVED-LIRSVHKKGENGLANPGNIASYVVVTHQHSTI 306 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~-lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~ 306 (382)
+..++|+||+..|=++.....+.. .+..+..+.. ..+|++||..+..
T Consensus 120 ~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~---------~~~i~tTH~~~l~ 167 (234)
T d1wb9a2 120 EYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIK---------ALTLFATHYFELT 167 (234)
T ss_dssp TTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTC---------CEEEEECSCGGGG
T ss_pred cccEEeecccccCCChhhhhHHHHHhhhhhhcccc---------ceEEEecchHHHh
Confidence 467999999999999998877754 5667766532 4688888876544
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=97.80 E-value=7.6e-07 Score=74.77 Aligned_cols=34 Identities=21% Similarity=0.273 Sum_probs=29.2
Q ss_pred eeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC
Q 016804 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 106 iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.+++.+|++.+| ++.|+|||||||||+|.+|.-+
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~ 47 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTA 47 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHH
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 467788888776 8999999999999999999744
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.74 E-value=0.00012 Score=65.95 Aligned_cols=33 Identities=30% Similarity=0.404 Sum_probs=26.5
Q ss_pred eeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHH
Q 016804 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIA 138 (382)
Q Consensus 106 iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~ 138 (382)
-|+++..=+.+|+++.|.|++|+|||||+.-|+
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la 56 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQA 56 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHH
T ss_pred hHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 344443337899999999999999999988776
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.50 E-value=1.8e-05 Score=67.77 Aligned_cols=27 Identities=33% Similarity=0.587 Sum_probs=24.2
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCC
Q 016804 117 GEAVGIIGPSGTGKSTILKIIAGLLAP 143 (382)
Q Consensus 117 Ge~vaLiGpNGaGKSTLLklI~Gl~~p 143 (382)
|.++.|+||||||||||++.|....+.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCCC
Confidence 889999999999999999999876653
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.47 E-value=2.5e-05 Score=64.49 Aligned_cols=24 Identities=38% Similarity=0.466 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
+++|+|++|||||||++-|+.-+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~ 27 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999986543
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.43 E-value=3.3e-05 Score=64.10 Aligned_cols=35 Identities=31% Similarity=0.422 Sum_probs=27.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG 152 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G 152 (382)
.|+++.|.||+||||||+.+.|+..+.. --+.+++
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg~--~~~~~~~ 37 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPGV--PKVHFHS 37 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSS--CEEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC--CEEEecH
Confidence 5899999999999999999999976532 1355555
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.42 E-value=3.7e-05 Score=69.46 Aligned_cols=35 Identities=34% Similarity=0.386 Sum_probs=26.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEE
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i 150 (382)
+|..++++|+||+|||||+|.|.|-..-..|+|.-
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~ 128 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE 128 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhhccCccc
Confidence 58899999999999999999999987777788764
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.37 E-value=1.6e-05 Score=65.83 Aligned_cols=34 Identities=26% Similarity=0.281 Sum_probs=28.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG 152 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G 152 (382)
.+.|.||+|+|||||++.++..+....+.+.+.+
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~ 36 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFY 36 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 4789999999999999999999987766665544
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.31 E-value=5.1e-05 Score=62.62 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=23.9
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.+|-++.|+|++||||||+.+.|+--+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999998544
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.29 E-value=5.4e-05 Score=62.72 Aligned_cols=27 Identities=30% Similarity=0.416 Sum_probs=23.9
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+.+.++.|+||+||||||+.+.|+.-+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998754
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.21 E-value=3.9e-05 Score=69.61 Aligned_cols=36 Identities=28% Similarity=0.384 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEEC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~ 151 (382)
+|..++++|+||+|||||+|.|.|-..-..|+|.=.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~ 131 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEH 131 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC------------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhhhcccccc
Confidence 588899999999999999999999877777888743
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.18 E-value=8.6e-05 Score=69.95 Aligned_cols=41 Identities=29% Similarity=0.546 Sum_probs=29.4
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHH
Q 016804 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIA 138 (382)
Q Consensus 92 I~~~nvs~~yg~~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~ 138 (382)
|+++|. ++|.+.+ ++++..+.+.+|+|||||||||+|.+|.
T Consensus 6 l~l~NF-ks~~~~~-----~i~f~~~~l~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 6 LELSNF-KSYRGVT-----KVGFGESNFTSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp EEEESC-SSCCSEE-----EEECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred EEEeCe-eeeCCCE-----EEeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 566663 3554332 3344556699999999999999999984
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.18 E-value=8.1e-05 Score=61.44 Aligned_cols=24 Identities=29% Similarity=0.617 Sum_probs=21.6
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCC
Q 016804 118 EAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 118 e~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
..++|+||.|||||||.+.|+-.+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999999765
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.17 E-value=4.9e-05 Score=63.72 Aligned_cols=26 Identities=15% Similarity=0.276 Sum_probs=22.2
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCCC
Q 016804 118 EAVGIIGPSGTGKSTILKIIAGLLAP 143 (382)
Q Consensus 118 e~vaLiGpNGaGKSTLLklI~Gl~~p 143 (382)
.+++|+|++|||||||++-|...+..
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~ 27 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVR 27 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 37899999999999999988776554
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=97.10 E-value=0.00011 Score=59.30 Aligned_cols=23 Identities=43% Similarity=0.652 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.+.|+||+||||||+.+.|+-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999998654
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.10 E-value=0.00013 Score=60.32 Aligned_cols=27 Identities=37% Similarity=0.587 Sum_probs=23.8
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
++|-.+.|.||+||||||+.+.|+--+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 467789999999999999999998654
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=97.09 E-value=0.00014 Score=59.94 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCC
Q 016804 117 GEAVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 117 Ge~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
..++.|.|++||||||+.+.|+..+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999999874
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.08 E-value=0.00013 Score=64.30 Aligned_cols=26 Identities=27% Similarity=0.477 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+|.++.|+||||||||||++.|.--.
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhC
Confidence 58999999999999999999887544
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.04 E-value=0.00013 Score=61.42 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
++||-||+|||||||.+.|.-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999986543
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=97.00 E-value=0.00018 Score=59.57 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=23.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCCCC
Q 016804 118 EAVGIIGPSGTGKSTILKIIAGLLAPD 144 (382)
Q Consensus 118 e~vaLiGpNGaGKSTLLklI~Gl~~p~ 144 (382)
.+++|.|+.||||||+.+.|+-.+...
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~~ 28 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRKE 28 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 589999999999999999998655433
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.98 E-value=0.00014 Score=61.33 Aligned_cols=26 Identities=35% Similarity=0.497 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+|-++.|+|++||||||+.+.|+-.+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57799999999999999999998644
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.98 E-value=0.00017 Score=58.57 Aligned_cols=32 Identities=28% Similarity=0.311 Sum_probs=23.6
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC
Q 016804 118 EAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG 152 (382)
Q Consensus 118 e~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G 152 (382)
+++.|.||+|||||||.+.|..- ..|.+.++.
T Consensus 3 klIii~G~pGsGKTTla~~L~~~---~~~~~~~~~ 34 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAK---NPGFYNINR 34 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH---STTEEEECH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh---CCCCEEech
Confidence 46889999999999999977532 225565554
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.97 E-value=0.0075 Score=53.39 Aligned_cols=25 Identities=28% Similarity=0.497 Sum_probs=22.0
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHc
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~G 139 (382)
.+|+++.|.|+.|+|||||+--|+-
T Consensus 27 ~pg~~~~i~G~~G~GKS~l~l~la~ 51 (274)
T d1nlfa_ 27 VAGTVGALVSPGGAGKSMLALQLAA 51 (274)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 4699999999999999999877664
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.96 E-value=0.00019 Score=58.65 Aligned_cols=32 Identities=44% Similarity=0.627 Sum_probs=25.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC
Q 016804 118 EAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG 152 (382)
Q Consensus 118 e~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G 152 (382)
.++.|.||+||||||+.+.|+..+. +.+.++|
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~ 34 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEG 34 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC---CCEEEeh
Confidence 3688999999999999999997653 4455554
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.95 E-value=0.00018 Score=59.20 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=18.8
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q 016804 120 VGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~Gl 140 (382)
+.|+||+||||||+.+.|+--
T Consensus 7 I~i~G~pGsGKTTia~~La~~ 27 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASK 27 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999753
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.79 E-value=0.00028 Score=60.26 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.|.|.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 39999999999999999999864
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.79 E-value=0.00057 Score=57.47 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.+||+|..|+|||||++.|.|-.
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999743
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.78 E-value=0.00028 Score=60.49 Aligned_cols=22 Identities=55% Similarity=0.729 Sum_probs=19.3
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q 016804 120 VGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+.|+||||||||||++.|+--.
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999986544
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.70 E-value=0.00037 Score=60.69 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
+++|+||.|||||||++.|...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~ 23 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRY 23 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHH
Confidence 6899999999999999999753
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.66 E-value=0.00036 Score=58.41 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|+.|+|||||++.|.|-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999985
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.65 E-value=0.00059 Score=56.79 Aligned_cols=27 Identities=30% Similarity=0.396 Sum_probs=24.5
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcC
Q 016804 114 IRHGEAVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 114 i~~Ge~vaLiGpNGaGKSTLLklI~Gl 140 (382)
+++|+++-|.||+|||||||+.-++.-
T Consensus 20 i~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 20 IETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence 789999999999999999998877753
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.65 E-value=0.00046 Score=57.56 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.|+|-.
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.64 E-value=0.00044 Score=59.85 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
++||-|++|||||||.+.|+-.+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l 26 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLL 26 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.64 E-value=0.00041 Score=59.77 Aligned_cols=21 Identities=52% Similarity=0.695 Sum_probs=18.7
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q 016804 120 VGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~Gl 140 (382)
+.|+||||||||||++.|+-.
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 679999999999999998654
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.64 E-value=0.00026 Score=59.77 Aligned_cols=21 Identities=38% Similarity=0.752 Sum_probs=19.5
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q 016804 120 VGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~Gl 140 (382)
|||+|+.++|||||++.|+|-
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999864
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.62 E-value=0.00046 Score=58.77 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+..++.|+||.||||||+.+.|+--+
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998543
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.58 E-value=0.00052 Score=55.21 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|++|+|||||++.+.+-
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4679999999999999999984
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.58 E-value=0.00056 Score=58.58 Aligned_cols=23 Identities=17% Similarity=0.420 Sum_probs=20.4
Q ss_pred cEEEEEcCCCccHHHHHHHHHcC
Q 016804 118 EAVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 118 e~vaLiGpNGaGKSTLLklI~Gl 140 (382)
..+.|+||||+|||||++.|...
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999988754
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.57 E-value=0.00056 Score=56.92 Aligned_cols=22 Identities=36% Similarity=0.629 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
+|+|+|.+|+|||||+|.|.|-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999999984
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=96.56 E-value=0.0005 Score=57.45 Aligned_cols=22 Identities=41% Similarity=0.552 Sum_probs=19.8
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q 016804 120 VGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+.|+|++||||||+.+.|+-.+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999998665
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.55 E-value=0.0004 Score=57.41 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|||++|||||||++.+.+-.
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=96.53 E-value=0.00061 Score=57.25 Aligned_cols=23 Identities=39% Similarity=0.619 Sum_probs=21.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+++|+|..|+|||||++.|.|-.
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999853
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.52 E-value=0.00057 Score=58.21 Aligned_cols=22 Identities=27% Similarity=0.607 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|+.|||||||++.|.|-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999875
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=96.50 E-value=0.00056 Score=55.52 Aligned_cols=22 Identities=36% Similarity=0.409 Sum_probs=20.0
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q 016804 120 VGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
++|+|++|||||||++.+.+-.
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8899999999999999998754
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=96.50 E-value=0.00063 Score=54.97 Aligned_cols=23 Identities=26% Similarity=0.262 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.+.|+|++|||||||++.+.+-.
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36799999999999999987643
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=96.46 E-value=0.00059 Score=57.20 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.+.|+|++||||||+.+.|+--+
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 36699999999999999998433
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=96.44 E-value=0.00049 Score=57.87 Aligned_cols=22 Identities=32% Similarity=0.590 Sum_probs=20.3
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q 016804 120 VGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+||+|+.++|||||++.|.|-.
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999998753
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.42 E-value=0.00075 Score=57.55 Aligned_cols=32 Identities=19% Similarity=0.222 Sum_probs=25.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEEC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~ 151 (382)
+-.++.|+||.||||||+.+.|+--+ |-+.|+
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~----g~~~is 38 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDY----SFVHLS 38 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS----SCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh----CCeEEe
Confidence 34579999999999999999998765 445554
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=96.41 E-value=0.00069 Score=56.12 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
++.|.|++||||||+.+.|+..+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 577899999999999999997763
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.37 E-value=0.00078 Score=56.11 Aligned_cols=22 Identities=41% Similarity=0.558 Sum_probs=19.3
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q 016804 120 VGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+.|+|+.||||||+.+.|+-.+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999998655
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=96.32 E-value=0.001 Score=56.40 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=22.2
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHc
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~G 139 (382)
++|=.+.|+||.||||||+.+.|+-
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHH
Confidence 4677788999999999999999993
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=96.30 E-value=0.00096 Score=54.52 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|+|||||++.|.|.-
T Consensus 3 kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999763
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.28 E-value=0.001 Score=56.45 Aligned_cols=22 Identities=32% Similarity=0.372 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
++.|+||.||||||..+.|+--
T Consensus 3 iI~i~GppGSGKsT~a~~La~~ 24 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEK 24 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999853
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.27 E-value=0.00071 Score=57.79 Aligned_cols=28 Identities=21% Similarity=0.405 Sum_probs=24.4
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 114 IRHGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 114 i~~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+.++.++.|+||.||||||+.+.|+--+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567899999999999999999998644
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=96.24 E-value=0.00092 Score=56.73 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.+.|+||.||||||+.+.|+--+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999997543
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.20 E-value=0.0012 Score=55.09 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=19.2
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q 016804 120 VGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+.|+||.||||||+.+.|+--+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999996543
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=96.18 E-value=0.0012 Score=56.46 Aligned_cols=30 Identities=40% Similarity=0.604 Sum_probs=24.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcC---CCCCccEE
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL---LAPDKGEV 148 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl---~~p~sG~I 148 (382)
+++|.||.||||||+.+.|+-- ..-++|.+
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~gl~~iStGdL 37 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAI 37 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEECHHHH
Confidence 7899999999999999999854 33455655
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=96.15 E-value=0.00054 Score=56.79 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.++|||||+|.|.|..
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38999999999999999998864
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.13 E-value=0.00091 Score=62.91 Aligned_cols=37 Identities=30% Similarity=0.486 Sum_probs=30.3
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEE
Q 016804 114 IRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150 (382)
Q Consensus 114 i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i 150 (382)
++.|.-+.|.||.||||||||+.|++.++|+.=-|.+
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti 199 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 199 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred HHhCCCEEEEeeccccchHHHHHHhhhcccccceeec
Confidence 3445568999999999999999999999887655555
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.12 E-value=0.0014 Score=55.58 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
++.++|.+|||||||.+.|+..+
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l 26 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYL 26 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999644
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=96.11 E-value=0.0012 Score=56.00 Aligned_cols=22 Identities=36% Similarity=0.682 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
++||.|+.||||||+.+.|.-+
T Consensus 5 IIgitG~~gSGKstva~~l~~~ 26 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRSW 26 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 6899999999999999999743
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.10 E-value=0.0014 Score=56.50 Aligned_cols=23 Identities=48% Similarity=0.692 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+++|-||.||||||+.+.|+--+
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47888999999999999998644
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=96.10 E-value=0.0012 Score=54.30 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|+.|||||||++.|.+-.
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 37899999999999999998854
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.06 E-value=0.0012 Score=58.22 Aligned_cols=33 Identities=21% Similarity=0.239 Sum_probs=25.7
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC
Q 016804 118 EAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG 152 (382)
Q Consensus 118 e~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G 152 (382)
..+.|.||.|||||||.+.|++-+.. +-+.+++
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~~--~~~~i~~ 65 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQG--NVIVIDN 65 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTT--CCEEECT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhc--ceEEEec
Confidence 45889999999999999999997642 3445554
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.04 E-value=0.0011 Score=56.24 Aligned_cols=25 Identities=32% Similarity=0.280 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 117 GEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 117 Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.=+++|-|+.||||||+++.|+..+
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999998755
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=95.99 E-value=0.0017 Score=54.65 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.+.|+||.||||||+.+.|+--+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999998644
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.97 E-value=0.0017 Score=55.06 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=21.0
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHH
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIA 138 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~ 138 (382)
++-+++.++|++||||||+.+-++
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~ 35 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHL 35 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 455789999999999999999874
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.94 E-value=0.00059 Score=55.81 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|+.|+|||||++.|.|-
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3799999999999999999985
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=95.87 E-value=0.0018 Score=53.41 Aligned_cols=23 Identities=35% Similarity=0.320 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.++|+|..|||||||++.|.+-.
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999853
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.87 E-value=0.0013 Score=57.22 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
++.+++|-|+-||||||+++.|+..+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999998774
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.86 E-value=0.0022 Score=55.34 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+|.+++|-|+-||||||+++.|.-.+
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999998644
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.84 E-value=0.002 Score=53.92 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=19.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.+.|+||.||||||+.+.|+--
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999999843
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.83 E-value=0.0018 Score=58.45 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=20.6
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q 016804 120 VGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
++|+|.+|+|||||+|.|.|-.
T Consensus 35 I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 35 ILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 8899999999999999999964
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.83 E-value=0.0023 Score=54.87 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=23.8
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHc
Q 016804 114 IRHGEAVGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 114 i~~Ge~vaLiGpNGaGKSTLLklI~G 139 (382)
+++|+++-|.||.|||||||..-++-
T Consensus 31 i~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 31 VETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp EESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 89999999999999999999987763
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.83 E-value=0.0019 Score=55.31 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|+.|+|||||++.+.+-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.78 E-value=0.0022 Score=53.81 Aligned_cols=22 Identities=41% Similarity=0.584 Sum_probs=19.3
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q 016804 120 VGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+.|+||.||||||+.+.|+--+
T Consensus 3 I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999997543
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.76 E-value=0.0014 Score=61.27 Aligned_cols=24 Identities=33% Similarity=0.599 Sum_probs=21.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
++||-|++||||||+.+.|.-++.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~ 105 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHh
Confidence 789999999999999999987763
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.74 E-value=0.0025 Score=55.68 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=23.9
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
++|-+++|-|+-||||||+.+.|.--+
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L 27 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEAL 27 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999987654
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=95.73 E-value=0.0024 Score=55.27 Aligned_cols=21 Identities=38% Similarity=0.708 Sum_probs=19.2
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 016804 119 AVGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~G 139 (382)
++||.|+.||||||+.+++.-
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999963
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=95.70 E-value=0.0024 Score=52.72 Aligned_cols=21 Identities=29% Similarity=0.501 Sum_probs=18.5
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q 016804 120 VGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~Gl 140 (382)
++++|++|+|||||++.+.+-
T Consensus 5 i~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 679999999999999988653
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=95.69 E-value=0.0023 Score=53.96 Aligned_cols=22 Identities=32% Similarity=0.635 Sum_probs=20.4
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q 016804 120 VGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+||||+..||||||++.|.|..
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEeCCCCcHHHHHHHHHHhc
Confidence 8999999999999999999753
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=95.68 E-value=0.0027 Score=55.24 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=20.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHc
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~G 139 (382)
.+.++.|.||.|+|||||++.++-
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~ 51 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGIN 51 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHH
Confidence 457899999999999999998764
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=95.56 E-value=0.0034 Score=55.33 Aligned_cols=26 Identities=27% Similarity=0.526 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
++.+++++||+|+||||.+-=|+..+
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~ 30 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYY 30 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999876666543
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.52 E-value=0.003 Score=52.37 Aligned_cols=20 Identities=35% Similarity=0.614 Sum_probs=18.6
Q ss_pred EEEEcCCCccHHHHHHHHHc
Q 016804 120 VGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~G 139 (382)
++|+|+.|+|||||++.+.+
T Consensus 5 i~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHc
Confidence 78999999999999999875
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.52 E-value=0.0037 Score=54.70 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=20.4
Q ss_pred EEEEcCCCccHHHHHHHHHcCCC
Q 016804 120 VGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
+.|.||+|+||||++++|+..+.
T Consensus 55 lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 55 AMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999997653
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.49 E-value=0.0036 Score=54.72 Aligned_cols=32 Identities=31% Similarity=0.411 Sum_probs=26.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCCCccEE
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV 148 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I 148 (382)
+|.+++|=|+-||||||+.++|+--+.. .|.+
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~-~~~~ 33 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP-NCKL 33 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT-SEEE
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHHh-CCEE
Confidence 7999999999999999999999866653 3443
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.49 E-value=0.0035 Score=52.66 Aligned_cols=22 Identities=32% Similarity=0.527 Sum_probs=19.3
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q 016804 120 VGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+.|+||.||||||+.+.|+--+
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999998643
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.48 E-value=0.0043 Score=52.81 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.8
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHH
Q 016804 114 IRHGEAVGIIGPSGTGKSTILKII 137 (382)
Q Consensus 114 i~~Ge~vaLiGpNGaGKSTLLklI 137 (382)
+++|+++.|.|++|+|||||..-+
T Consensus 23 i~~G~~~~I~G~~G~GKT~la~~~ 46 (242)
T d1tf7a1 23 LPIGRSTLVSGTSGTGKTLFSIQF 46 (242)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHH
Confidence 889999999999999999997544
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.47 E-value=0.0032 Score=54.73 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=19.9
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q 016804 120 VGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+-|.||+|+||||++++|+.-+
T Consensus 48 lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 6799999999999999998754
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.42 E-value=0.0034 Score=52.05 Aligned_cols=21 Identities=38% Similarity=0.396 Sum_probs=18.7
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q 016804 120 VGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~Gl 140 (382)
++++|+.|+|||||++.+.+-
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 789999999999999987653
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.40 E-value=0.0063 Score=50.16 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=18.6
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 016804 119 AVGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~G 139 (382)
.++|+|..|+|||||++-+.+
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999998775
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=95.40 E-value=0.0039 Score=53.35 Aligned_cols=23 Identities=30% Similarity=0.536 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.+.|+||.||||||+.+.|+--+
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999643
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=95.40 E-value=0.0029 Score=52.38 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++++|+.|+|||||++.+.+-
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999764
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=95.37 E-value=0.009 Score=51.36 Aligned_cols=34 Identities=35% Similarity=0.440 Sum_probs=27.0
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHH
Q 016804 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIA 138 (382)
Q Consensus 104 ~~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~ 138 (382)
+..|+..-+.+ .|.-+.|.|+||+|||||.-.+.
T Consensus 2 ~~~lH~~~v~~-~g~gvl~~G~sG~GKStlal~l~ 35 (176)
T d1kkma_ 2 RRSMHGVLVDI-YGLGVLITGDSGVGKSETALELV 35 (176)
T ss_dssp CEEEEEEEEEE-TTEEEEEECCTTSCHHHHHHHHH
T ss_pred CceEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHH
Confidence 45677766655 67889999999999999887655
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.35 E-value=0.0042 Score=54.31 Aligned_cols=41 Identities=22% Similarity=0.261 Sum_probs=30.8
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCC--CccEEEECCEEC
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAP--DKGEVYIRGRKR 155 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p--~sG~I~i~G~~i 155 (382)
++|-++-|.|.+|||||||.+.|.--+.. ..-.+.++|..+
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~i 64 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 64 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHH
Confidence 57889999999999999999999743321 123577888654
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.34 E-value=0.0047 Score=52.71 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=24.0
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcC
Q 016804 114 IRHGEAVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 114 i~~Ge~vaLiGpNGaGKSTLLklI~Gl 140 (382)
+++|+++-|.|++|+|||||.--++--
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~~ 57 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCVN 57 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 899999999999999999997777543
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.34 E-value=0.0047 Score=53.55 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=22.4
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHH
Q 016804 114 IRHGEAVGIIGPSGTGKSTILKIIA 138 (382)
Q Consensus 114 i~~Ge~vaLiGpNGaGKSTLLklI~ 138 (382)
+++|+++-|.||+|||||||.--++
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 8999999999999999999977543
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=95.33 E-value=0.0042 Score=53.82 Aligned_cols=22 Identities=41% Similarity=0.614 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
++||.|+.||||||..+++.-+
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHC
Confidence 6899999999999999998743
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.32 E-value=0.0039 Score=53.92 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=19.3
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q 016804 120 VGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~Gl 140 (382)
+.|.||+|+|||||+++++..
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 679999999999999999974
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.31 E-value=0.0051 Score=53.43 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=23.5
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHc
Q 016804 114 IRHGEAVGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 114 i~~Ge~vaLiGpNGaGKSTLLklI~G 139 (382)
+++|.++.|.||+|||||||+.-++-
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~ 48 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVE 48 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 88999999999999999999877653
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.30 E-value=0.0039 Score=51.97 Aligned_cols=21 Identities=43% Similarity=0.575 Sum_probs=18.7
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q 016804 120 VGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~Gl 140 (382)
++++|+.|+|||||++.+.+-
T Consensus 7 i~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999987663
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.29 E-value=0.0048 Score=50.82 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=19.0
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q 016804 120 VGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~Gl 140 (382)
++|+|++|+|||||++.+.+-
T Consensus 6 i~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999988764
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.26 E-value=0.0043 Score=53.58 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=23.9
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHc
Q 016804 114 IRHGEAVGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 114 i~~Ge~vaLiGpNGaGKSTLLklI~G 139 (382)
|++|+++.|.||+|||||||.-.++.
T Consensus 34 ip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 34 IESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 88999999999999999999887764
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.25 E-value=0.0046 Score=59.42 Aligned_cols=23 Identities=30% Similarity=0.674 Sum_probs=21.2
Q ss_pred EEEEcCCCccHHHHHHHHHcCCC
Q 016804 120 VGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
+||+|.+|+|||||+|.|.|.-.
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~~ 81 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIGN 81 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCCT
T ss_pred EEEECCCCCCHHHHHHHHhCCCc
Confidence 79999999999999999999653
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.13 E-value=0.0044 Score=51.04 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=18.9
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 016804 119 AVGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~G 139 (382)
.++|+|+.|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999999764
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=95.12 E-value=0.0049 Score=53.69 Aligned_cols=27 Identities=41% Similarity=0.587 Sum_probs=23.2
Q ss_pred EEEEcCCCccHHHHHHHHHcCCCCCcc
Q 016804 120 VGIIGPSGTGKSTILKIIAGLLAPDKG 146 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~Gl~~p~sG 146 (382)
+-+.||.|+||||+.++|+.-+....+
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~~~~~ 64 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQTNIH 64 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTCCEE
T ss_pred EEEECCCCCcHHHHHHHHHhccCCCcc
Confidence 679999999999999999987765544
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=95.10 E-value=0.0026 Score=59.82 Aligned_cols=26 Identities=38% Similarity=0.613 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+.-++||.||.|||||||++.|...+
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~~~ 78 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGMLL 78 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 35679999999999999999998544
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.09 E-value=0.0066 Score=49.86 Aligned_cols=20 Identities=20% Similarity=0.463 Sum_probs=17.9
Q ss_pred EEEEcCCCccHHHHHHHHHc
Q 016804 120 VGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~G 139 (382)
++++|+.|+|||||++-+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987664
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.06 E-value=0.0054 Score=51.37 Aligned_cols=21 Identities=33% Similarity=0.404 Sum_probs=19.1
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q 016804 120 VGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~Gl 140 (382)
++|+|+.|+|||||++.+.+-
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999998864
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=95.04 E-value=0.012 Score=50.60 Aligned_cols=33 Identities=30% Similarity=0.413 Sum_probs=27.6
Q ss_pred eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHH
Q 016804 105 HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIA 138 (382)
Q Consensus 105 ~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~ 138 (382)
..++..-+.+ .|.-+.|.||||+|||||.-.+.
T Consensus 4 ~~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~ 36 (177)
T d1knxa2 4 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLI 36 (177)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred ceEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence 4577777777 78889999999999999987765
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.99 E-value=0.0055 Score=50.90 Aligned_cols=21 Identities=38% Similarity=0.482 Sum_probs=18.7
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q 016804 120 VGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~Gl 140 (382)
++++|++|+|||||++.+.+-
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999987754
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.95 E-value=0.0064 Score=51.57 Aligned_cols=23 Identities=30% Similarity=0.628 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+++|-|.-||||||+++.|..-+
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998654
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=94.94 E-value=0.0055 Score=53.48 Aligned_cols=23 Identities=39% Similarity=0.680 Sum_probs=20.2
Q ss_pred EEEEcCCCccHHHHHHHHHcCCC
Q 016804 120 VGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
+-+.||.|+||||+.+++++.+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 46999999999999999998653
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=94.94 E-value=0.006 Score=52.95 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCC
Q 016804 117 GEAVGIIGPSGTGKSTILKIIAGLLAP 143 (382)
Q Consensus 117 Ge~vaLiGpNGaGKSTLLklI~Gl~~p 143 (382)
...+.|.||.|+||||+++.|+..++.
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~ 69 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKD 69 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHhc
Confidence 357889999999999999999987753
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.92 E-value=0.003 Score=58.58 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=18.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
++||.|+|||||||+.+.|.-++
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~ 28 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIF 28 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 79999999999999999988754
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.91 E-value=0.0064 Score=50.31 Aligned_cols=23 Identities=35% Similarity=0.670 Sum_probs=19.7
Q ss_pred EEEEcCCCccHHHHHHHHHcCCC
Q 016804 120 VGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
++|+|..|+|||||++.+.+...
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEECCCCcCHHHHHHHHhCCcc
Confidence 78999999999999999988643
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=94.91 E-value=0.0068 Score=53.30 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=21.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
...++.++||+|+||||.+-=|+-.+
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~~~ 34 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLALYY 34 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45688999999999999887777544
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.89 E-value=0.0055 Score=50.70 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=18.5
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 016804 119 AVGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~G 139 (382)
.++|+|.+|+|||||++-+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 488999999999999997765
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.88 E-value=0.0074 Score=49.55 Aligned_cols=21 Identities=38% Similarity=0.488 Sum_probs=18.8
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q 016804 120 VGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~Gl 140 (382)
++++|.+|+|||||++.+.+-
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999987764
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=94.88 E-value=0.0063 Score=53.40 Aligned_cols=22 Identities=36% Similarity=0.607 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
++||+|...||||||++.|.+-
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 5999999999999999999874
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.86 E-value=0.0076 Score=49.95 Aligned_cols=20 Identities=30% Similarity=0.554 Sum_probs=17.8
Q ss_pred EEEEcCCCccHHHHHHHHHc
Q 016804 120 VGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~G 139 (382)
++++|++|+|||||++.+..
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999977654
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.85 E-value=0.0061 Score=51.03 Aligned_cols=21 Identities=33% Similarity=0.563 Sum_probs=18.6
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q 016804 120 VGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~Gl 140 (382)
++++|..|+|||||++.+.+-
T Consensus 5 v~vvG~~~vGKSSLi~~l~~~ 25 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVNK 25 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999977753
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.85 E-value=0.0063 Score=50.05 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=19.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|..|+|||||++-+.+-
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999988764
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=94.84 E-value=0.0058 Score=56.44 Aligned_cols=33 Identities=27% Similarity=0.497 Sum_probs=24.7
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC
Q 016804 118 EAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG 152 (382)
Q Consensus 118 e~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G 152 (382)
.-+.++||+|||||+|.|.|+..+.. --+.+++
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~~~~--~~~~i~~ 82 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKLANA--PFIKVEA 82 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTC--CEEEEEG
T ss_pred ceEEEECCCCCCHHHHHHHHhhcccc--chhcccc
Confidence 44569999999999999999987531 2455554
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.83 E-value=0.0059 Score=50.52 Aligned_cols=20 Identities=25% Similarity=0.605 Sum_probs=18.7
Q ss_pred EEEEcCCCccHHHHHHHHHc
Q 016804 120 VGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~G 139 (382)
++|+|+.|+|||||++.+.+
T Consensus 8 i~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998876
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=94.80 E-value=0.0052 Score=54.36 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=19.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl 140 (382)
+-.+++++||+|+||||.+-=|+-.
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~ 34 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKM 34 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4458899999999999976666643
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=94.77 E-value=0.004 Score=52.02 Aligned_cols=22 Identities=36% Similarity=0.424 Sum_probs=18.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++++|++|+|||||++.+.+-
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3779999999999999988543
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.76 E-value=0.0068 Score=49.53 Aligned_cols=20 Identities=25% Similarity=0.401 Sum_probs=18.2
Q ss_pred EEEEcCCCccHHHHHHHHHc
Q 016804 120 VGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~G 139 (382)
++|+|..|+|||||++.+.+
T Consensus 5 v~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998764
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.73 E-value=0.0072 Score=49.45 Aligned_cols=22 Identities=14% Similarity=0.259 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|..|+|||||++.+.+-
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999998753
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.70 E-value=0.0073 Score=49.68 Aligned_cols=21 Identities=38% Similarity=0.465 Sum_probs=18.6
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q 016804 120 VGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~Gl 140 (382)
++|+|.+|+|||||++.+.+-
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999887753
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.66 E-value=0.011 Score=49.13 Aligned_cols=22 Identities=50% Similarity=0.767 Sum_probs=20.0
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q 016804 120 VGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+.|+|..|+|||||++.+.+..
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEECCCCcCHHHHHHHHHhCc
Confidence 7899999999999999998764
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.64 E-value=0.0076 Score=49.62 Aligned_cols=20 Identities=35% Similarity=0.596 Sum_probs=18.4
Q ss_pred EEEEcCCCccHHHHHHHHHc
Q 016804 120 VGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~G 139 (382)
++|+|..|+|||||++-+..
T Consensus 7 i~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998875
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.56 E-value=0.0075 Score=50.14 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=18.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.+.|+|.+|+|||||++.+.+-
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3689999999999999887754
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.56 E-value=0.019 Score=48.18 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=19.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++++|..|+|||||++-+.+-
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999977663
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=94.55 E-value=0.0066 Score=53.63 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=19.5
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCC
Q 016804 118 EAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 118 e~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.+++++||+|+||||.+-=|+-.+
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~ 33 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQF 33 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999776666543
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=94.50 E-value=0.01 Score=53.60 Aligned_cols=24 Identities=46% Similarity=0.736 Sum_probs=21.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCC
Q 016804 118 EAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 118 e~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.-+-|.||+|||||+|.+.|+..+
T Consensus 46 ~~iLL~GppGtGKT~la~~iA~~~ 69 (256)
T d1lv7a_ 46 KGVLMVGPPGTGKTLLAKAIAGEA 69 (256)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEeeCCCCCCccHHHHHHHHHc
Confidence 447799999999999999999865
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.50 E-value=0.0085 Score=49.86 Aligned_cols=21 Identities=43% Similarity=0.558 Sum_probs=19.0
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q 016804 120 VGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~Gl 140 (382)
++++|..|+|||||++.+.+-
T Consensus 10 i~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988763
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=94.43 E-value=0.011 Score=50.00 Aligned_cols=29 Identities=21% Similarity=0.239 Sum_probs=25.7
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCCC
Q 016804 114 IRHGEAVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 114 i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
.++|.++.|-|+=|||||||.|.++.-+-
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~lg 58 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence 46899999999999999999999886653
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.43 E-value=0.0082 Score=50.90 Aligned_cols=20 Identities=40% Similarity=0.579 Sum_probs=18.4
Q ss_pred EEEEcCCCccHHHHHHHHHc
Q 016804 120 VGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~G 139 (382)
++|+|+.|+|||||++.+.+
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhh
Confidence 88999999999999998775
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.40 E-value=0.01 Score=48.80 Aligned_cols=20 Identities=20% Similarity=0.370 Sum_probs=18.1
Q ss_pred EEEEcCCCccHHHHHHHHHc
Q 016804 120 VGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~G 139 (382)
+.|+|..|+|||||++.+.+
T Consensus 6 ivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998764
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=94.37 E-value=0.0079 Score=55.64 Aligned_cols=30 Identities=30% Similarity=0.419 Sum_probs=27.2
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 112 FKIRHGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 112 l~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+.|-+|+..+|+|++|+|||||+..|+.-.
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred ccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence 578999999999999999999999998644
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.35 E-value=0.0099 Score=51.37 Aligned_cols=21 Identities=33% Similarity=0.385 Sum_probs=18.7
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q 016804 120 VGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~Gl 140 (382)
+-|.||+|+||||+.++++.-
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~ 59 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHE 59 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHH
Confidence 568999999999999999864
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.33 E-value=0.0093 Score=53.34 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
-+-|.||.|||||+|.+.|+..
T Consensus 42 ~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhhc
Confidence 3679999999999999999963
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.29 E-value=0.01 Score=48.85 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=18.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|..|+|||||++-+.+-
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999976653
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=94.28 E-value=0.0095 Score=52.53 Aligned_cols=97 Identities=22% Similarity=0.279 Sum_probs=52.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEECCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhHhhc
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYEN 195 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~G~~i~~~~~~~~~~~~~Ig~V~Q~~~l~~~lTV~eni~~~~~~~ 195 (382)
.-.+++++||+|+||||.+-=|+-.+. . . +.+|+++-=|.+ .+
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~-~------~--------------g~kV~lit~Dt~-----R~----------- 53 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYK-K------K--------------GFKVGLVGADVY-----RP----------- 53 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHH-H------T--------------TCCEEEEECCCS-----SH-----------
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH-H------C--------------CCceEEEEeecc-----cc-----------
Confidence 346799999999999998766664331 0 1 125788775432 11
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcccccCCCCCCChHHHHHHHHHHHHhcCCCCCCCCCcEEEEeCCCCCCCH
Q 016804 196 SKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDP 266 (382)
Q Consensus 196 ~~~~~~~~~~~v~~~L~~~gL~~~~~~~~~~LSGGqrQRVaIArAL~~~~~~~a~~P~iLLLDEPtagLD~ 266 (382)
...++.+.+.+.+|+.-..-..+.++.-=.+ | ++..+... +-+++|.| |+|..+
T Consensus 54 ------ga~eQL~~~a~~l~v~~~~~~~~~~~~~~~~-~-a~~~~~~~-------~~d~IlID--TaGr~~ 107 (211)
T d1j8yf2 54 ------AALEQLQQLGQQIGVPVYGEPGEKDVVGIAK-R-GVEKFLSE-------KMEIIIVD--TAGRHG 107 (211)
T ss_dssp ------HHHHHHHHHHHHHTCCEECCTTCCCHHHHHH-H-HHHHHHHT-------TCSEEEEE--CCCSCC
T ss_pred ------chhHHHHHhccccCcceeecccchhhhHHHH-H-HHHHhhcc-------CCceEEEe--cCCcCc
Confidence 1123345566677776444444555533222 2 44444443 58999999 888644
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.24 E-value=0.0089 Score=52.00 Aligned_cols=42 Identities=14% Similarity=0.219 Sum_probs=29.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHH
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS 304 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~ 304 (382)
+..++++||.-. |.......+.+.+.+.... ..+|++|++.+
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~-----------~~~Il~tn~~~ 172 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYSKN-----------IRLIMVCDSMS 172 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTT-----------EEEEEEESCSC
T ss_pred CceEEEeccccc-cccccchhhhccccccccc-----------ccceeeecccc
Confidence 467999999854 7777776666666543221 46889998875
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.24 E-value=0.011 Score=54.50 Aligned_cols=22 Identities=32% Similarity=0.315 Sum_probs=19.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
++||-|+.|||||||.+.|.-.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHH
Confidence 7899999999999999877543
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.23 E-value=0.0098 Score=49.15 Aligned_cols=20 Identities=40% Similarity=0.586 Sum_probs=18.4
Q ss_pred EEEEcCCCccHHHHHHHHHc
Q 016804 120 VGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~G 139 (382)
++++|..|+|||||++-+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998764
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.22 E-value=0.0098 Score=49.37 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=18.5
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 016804 119 AVGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~G 139 (382)
.++|+|..|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998765
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.22 E-value=0.012 Score=49.27 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=18.6
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 016804 119 AVGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~G 139 (382)
.++|+|.+|+|||||++.+.+
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 488999999999999987765
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.21 E-value=0.011 Score=48.87 Aligned_cols=20 Identities=30% Similarity=0.542 Sum_probs=18.5
Q ss_pred EEEEcCCCccHHHHHHHHHc
Q 016804 120 VGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~G 139 (382)
+.|||+.|+|||||++-+.+
T Consensus 5 i~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999998885
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=94.19 E-value=0.007 Score=50.13 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
.+.|+|++|+|||||++.+.+-..
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~~ 37 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQS 37 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 377999999999999999875443
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.06 E-value=0.012 Score=48.68 Aligned_cols=20 Identities=25% Similarity=0.424 Sum_probs=18.1
Q ss_pred EEEEcCCCccHHHHHHHHHc
Q 016804 120 VGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~G 139 (382)
+.++|..|+|||||++.+.+
T Consensus 7 i~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999998775
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.06 E-value=0.013 Score=48.38 Aligned_cols=30 Identities=30% Similarity=0.429 Sum_probs=25.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCccEE
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLLAPDKGEV 148 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I 148 (382)
.+.|+|..|+|||||++-+..-..|+.|..
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~~~ 33 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTGIV 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCccEE
Confidence 368999999999999999887777777743
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=94.05 E-value=0.027 Score=47.92 Aligned_cols=33 Identities=36% Similarity=0.414 Sum_probs=25.4
Q ss_pred eeeEeeeEEEeCCcEEEEEcCCCccHHHHHHHHH
Q 016804 105 HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIA 138 (382)
Q Consensus 105 ~iL~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~ 138 (382)
+.++..-+.+ .|.-+.|.|+||+|||||.-.+.
T Consensus 4 t~~H~~~v~~-~g~gvli~G~sg~GKS~la~~l~ 36 (169)
T d1ko7a2 4 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELI 36 (169)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHH
T ss_pred eeEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHH
Confidence 4566655554 78889999999999999885554
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.03 E-value=0.016 Score=47.70 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=19.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.+.++|..|+|||||++-+..-
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3689999999999999988843
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.01 E-value=0.013 Score=50.47 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=19.0
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q 016804 120 VGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~Gl 140 (382)
+-|.||.|+||||++++|+..
T Consensus 38 lLl~Gp~G~GKttl~~~la~~ 58 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALARE 58 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHHH
Confidence 569999999999999999874
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=93.96 E-value=0.013 Score=54.64 Aligned_cols=24 Identities=42% Similarity=0.646 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcC
Q 016804 117 GEAVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 117 Ge~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.-++||.||-|||||||+..|...
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~ 74 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSL 74 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHHH
Confidence 457999999999999999999864
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.94 E-value=0.013 Score=48.21 Aligned_cols=20 Identities=35% Similarity=0.579 Sum_probs=17.9
Q ss_pred EEEEcCCCccHHHHHHHHHc
Q 016804 120 VGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~G 139 (382)
++|+|+.|+|||||++-+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999997654
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=93.89 E-value=0.0089 Score=52.13 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
++.|.||.|+||||+++.++..+
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 35567999999999999998765
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.89 E-value=0.0084 Score=49.72 Aligned_cols=20 Identities=35% Similarity=0.541 Sum_probs=8.6
Q ss_pred EEEEcCCCccHHHHHHHHHc
Q 016804 120 VGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~G 139 (382)
++|+|..|+|||||++.+++
T Consensus 9 i~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEECCCCC-----------
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987765
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.88 E-value=0.012 Score=53.81 Aligned_cols=24 Identities=38% Similarity=0.488 Sum_probs=22.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCC
Q 016804 118 EAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 118 e~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
-+|+|+||-++||||||+.|.|-.
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 479999999999999999999864
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.87 E-value=0.0077 Score=50.00 Aligned_cols=21 Identities=33% Similarity=0.514 Sum_probs=17.7
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 016804 119 AVGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~G 139 (382)
.++++|+.|+|||||++.+.+
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999987654
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=93.83 E-value=0.013 Score=52.42 Aligned_cols=21 Identities=38% Similarity=0.792 Sum_probs=19.3
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q 016804 120 VGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~Gl 140 (382)
+-+.||.|||||+|.+.|+..
T Consensus 45 iLl~GppGtGKT~la~aia~~ 65 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGE 65 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEecCCCCChhHHHHHHHHH
Confidence 579999999999999999974
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.83 E-value=0.014 Score=48.71 Aligned_cols=28 Identities=36% Similarity=0.577 Sum_probs=22.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcC--CCCCcc
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL--LAPDKG 146 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl--~~p~sG 146 (382)
.+.|+|.+|+|||||++-+.-. ..||-|
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence 3679999999999999988422 357878
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.81 E-value=0.012 Score=53.02 Aligned_cols=26 Identities=35% Similarity=0.482 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
...-+-|.||+|+|||+|.+.+++.+
T Consensus 40 ~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 40 PSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcchhHHHHHHHHh
Confidence 34447799999999999999999876
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=93.80 E-value=0.0077 Score=55.56 Aligned_cols=25 Identities=44% Similarity=0.658 Sum_probs=23.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLLAP 143 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~~p 143 (382)
-+-|+||.|+|||||+|.++++++|
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred eEEEECCCCccHHHHHHHHHHhCCC
Confidence 4789999999999999999999976
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=93.67 E-value=0.016 Score=47.86 Aligned_cols=21 Identities=29% Similarity=0.390 Sum_probs=18.5
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 016804 119 AVGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~G 139 (382)
.+.|+|..|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998764
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.63 E-value=0.016 Score=47.49 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=18.5
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q 016804 120 VGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~Gl 140 (382)
++|+|..|+|||||++-+..=
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999987643
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.59 E-value=0.016 Score=50.35 Aligned_cols=28 Identities=29% Similarity=0.402 Sum_probs=22.0
Q ss_pred EEEEEcCCCccHHHHHHHH-HcCCCCCcc
Q 016804 119 AVGIIGPSGTGKSTILKII-AGLLAPDKG 146 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI-~Gl~~p~sG 146 (382)
.+.|+|.+|+|||||++-+ .+-..||-|
T Consensus 8 KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence 4689999999999999876 344557666
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=93.58 E-value=0.018 Score=50.02 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 016804 119 AVGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~G 139 (382)
++||.|+-||||||+.+.|..
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999964
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.54 E-value=0.016 Score=48.55 Aligned_cols=20 Identities=25% Similarity=0.438 Sum_probs=17.9
Q ss_pred EEEEcCCCccHHHHHHHHHc
Q 016804 120 VGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~G 139 (382)
++|+|..|+|||||++.+..
T Consensus 12 i~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhh
Confidence 78999999999999987664
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.43 E-value=0.017 Score=51.69 Aligned_cols=25 Identities=36% Similarity=0.631 Sum_probs=21.4
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 115 RHGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
++| +-|.||.|||||+|.+.++...
T Consensus 38 ~~g--iLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 38 PRG--ILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp CCE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred Cce--eEEecCCCCCchHHHHHHHHHh
Confidence 445 7799999999999999999853
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=93.29 E-value=0.016 Score=56.50 Aligned_cols=23 Identities=39% Similarity=0.702 Sum_probs=21.2
Q ss_pred EEEEcCCCccHHHHHHHHHcCCC
Q 016804 120 VGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
+-+|||+|||||-|.|.|++++.
T Consensus 52 ILliGPTGvGKTlLAr~LAk~l~ 74 (443)
T d1g41a_ 52 ILMIGPTGVGKTEIARRLAKLAN 74 (443)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 67999999999999999999874
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.26 E-value=0.019 Score=51.77 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=20.8
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q 016804 120 VGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
++++|.-.||||||++.|+|.-
T Consensus 29 ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 29 IAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEcCCCCCHHHHHHHHhCCC
Confidence 7899999999999999999975
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=93.25 E-value=0.025 Score=47.89 Aligned_cols=22 Identities=32% Similarity=0.733 Sum_probs=20.3
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q 016804 120 VGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+||+|.-.+|||||++.|.|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 7999999999999999999864
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.22 E-value=0.019 Score=48.34 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=18.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
.++|+|..|+|||||++.+.+-
T Consensus 5 KvvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999776543
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.21 E-value=0.02 Score=47.84 Aligned_cols=21 Identities=29% Similarity=0.586 Sum_probs=17.6
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 016804 119 AVGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~G 139 (382)
.+.++|.+|+|||||++-+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 368999999999999975544
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=93.13 E-value=0.018 Score=55.01 Aligned_cols=26 Identities=35% Similarity=0.391 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
++-++.+.||.||||||+|..+....
T Consensus 157 ~~GliLvtGpTGSGKSTTl~~~l~~~ 182 (401)
T d1p9ra_ 157 PHGIILVTGPTGSGKSTTLYAGLQEL 182 (401)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred hhceEEEEcCCCCCccHHHHHHhhhh
Confidence 56689999999999999999998754
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=93.06 E-value=0.031 Score=50.56 Aligned_cols=41 Identities=24% Similarity=0.387 Sum_probs=29.8
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCC-CCCccEEEECCE
Q 016804 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLL-APDKGEVYIRGR 153 (382)
Q Consensus 113 ~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~-~p~sG~I~i~G~ 153 (382)
=++.|.++-|.||+|||||||+-.++.-. ++..--+++|.+
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE 91 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 91 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEccc
Confidence 48899999999999999999976665543 333334555554
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=92.82 E-value=0.03 Score=50.72 Aligned_cols=26 Identities=31% Similarity=0.557 Sum_probs=22.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC-CC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLLA-PD 144 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~~-p~ 144 (382)
.+++||.-.||||||++.|+|.-- |.
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~~lP~ 52 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRDFLPR 52 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCCCCC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCCCCCC
Confidence 378999999999999999999763 44
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.58 E-value=0.028 Score=48.56 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=21.9
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCC
Q 016804 118 EAVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 118 e~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
.+++|=|+=||||||+++.|.--+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHh
Confidence 4788999999999999999997653
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.33 E-value=0.034 Score=50.86 Aligned_cols=29 Identities=21% Similarity=0.473 Sum_probs=25.5
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHHc
Q 016804 111 SFKIRHGEAVGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 111 sl~i~~Ge~vaLiGpNGaGKSTLLklI~G 139 (382)
=+.+-+|+..+|+|++|+|||||+..|+.
T Consensus 62 l~pigkGQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 62 LAPYAKGGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp HSCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred eccccCCCEEEeeCCCCCCHHHHHHHHHH
Confidence 35799999999999999999999777754
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.26 E-value=0.03 Score=51.02 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=19.4
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q 016804 120 VGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+||||..-+|||||++.|+|--
T Consensus 3 v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC--
T ss_pred EeEECCCCCCHHHHHHHHHCCC
Confidence 8999999999999999998863
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.22 E-value=0.023 Score=51.70 Aligned_cols=28 Identities=25% Similarity=0.461 Sum_probs=23.9
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcC
Q 016804 113 KIRHGEAVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 113 ~i~~Ge~vaLiGpNGaGKSTLLklI~Gl 140 (382)
=++.|.++-|.||+|||||||+-.++..
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~ 83 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVAN 83 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHH
Confidence 4789999999999999999997666543
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=92.15 E-value=0.025 Score=51.44 Aligned_cols=30 Identities=30% Similarity=0.436 Sum_probs=26.1
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCC
Q 016804 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 113 ~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
=++.|.++-|.||+|||||||.-.++....
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aq 82 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQ 82 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCceEEEEecCCccchHHHHHHHHHHHH
Confidence 388999999999999999999988876543
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=91.94 E-value=0.04 Score=50.79 Aligned_cols=31 Identities=19% Similarity=0.322 Sum_probs=24.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCccEEEEC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i~ 151 (382)
.+.++||+|+|||.|.+.|+-.+. .--|.+|
T Consensus 54 ~~lf~Gp~GvGKT~lak~la~~l~--~~~i~~d 84 (315)
T d1r6bx3 54 SFLFAGPTGVGKTEVTVQLSKALG--IELLRFD 84 (315)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT--CEEEEEE
T ss_pred EEEEECCCcchhHHHHHHHHhhcc--CCeeEec
Confidence 478999999999999999998863 2245554
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=91.69 E-value=0.039 Score=50.07 Aligned_cols=20 Identities=30% Similarity=0.707 Sum_probs=18.3
Q ss_pred EEEEEcCCCccHHHHHHHHH
Q 016804 119 AVGIIGPSGTGKSTILKIIA 138 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~ 138 (382)
-+||+|+.|||||||+..|+
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHH
Confidence 37999999999999999995
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.68 E-value=0.042 Score=45.36 Aligned_cols=27 Identities=30% Similarity=0.533 Sum_probs=21.2
Q ss_pred EEEEcCCCccHHHHHHHHHcCC---CCCcc
Q 016804 120 VGIIGPSGTGKSTILKIIAGLL---APDKG 146 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~Gl~---~p~sG 146 (382)
+.|+|..|+|||||++-+..-. .||-|
T Consensus 5 iv~lG~~~vGKTsll~r~~~~~~~~~pTiG 34 (200)
T d2bcjq2 5 LLLLGTGESGKSTFIKQMRIIHGSGVPTTG 34 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTSSCCCCCS
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCceee
Confidence 6799999999999999885442 35555
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=91.51 E-value=0.039 Score=50.17 Aligned_cols=33 Identities=30% Similarity=0.578 Sum_probs=26.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC------------CCCccEEEEC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL------------APDKGEVYIR 151 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~------------~p~sG~I~i~ 151 (382)
.+||||..-||||||++.|++-- .|.-|.|.+.
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~ 56 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVP 56 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEecc
Confidence 49999999999999999999763 3445877654
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=91.30 E-value=0.044 Score=51.75 Aligned_cols=30 Identities=23% Similarity=0.285 Sum_probs=27.3
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCC
Q 016804 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 113 ~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
.++++..+.+.||.|+||||+.+.|++++.
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 457888999999999999999999999875
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=91.14 E-value=0.051 Score=46.86 Aligned_cols=20 Identities=35% Similarity=0.521 Sum_probs=18.4
Q ss_pred EEEEcCCCccHHHHHHHHHc
Q 016804 120 VGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~G 139 (382)
+||+|.-+||||||++.|.+
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHH
Confidence 79999999999999999963
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=91.02 E-value=0.067 Score=45.59 Aligned_cols=24 Identities=29% Similarity=0.735 Sum_probs=21.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
-+||+|.=.+|||||++.|.|...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhhc
Confidence 389999999999999999998654
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=90.73 E-value=0.054 Score=49.35 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHH---HcCCC
Q 016804 119 AVGIIGPSGTGKSTILKII---AGLLA 142 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI---~Gl~~ 142 (382)
-+||+|..|||||||...| +|...
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~ 34 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIH 34 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSC
T ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccc
Confidence 3799999999999999998 45543
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=90.62 E-value=0.054 Score=50.83 Aligned_cols=46 Identities=17% Similarity=0.096 Sum_probs=30.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHHHHh
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA 309 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~~~~ 309 (382)
.|-++++||--+-.... .+.+++.+.++.| ..+++++.+++.+...
T Consensus 276 ~~v~l~lDE~~~~~~~~---~l~~~l~~~Rk~G----------v~~~l~~Qs~~ql~~~ 321 (433)
T d1e9ra_ 276 RRLWLFIDELASLEKLA---SLADALTKGRKAG----------LRVVAGLQSTSQLDDV 321 (433)
T ss_dssp CCEEEEESCGGGSCBCS---SHHHHHHHCTTTT----------EEEEEEESCHHHHHHH
T ss_pred CceEEEechHhhhcccH---HHHHHHHHhCCCC----------ceEEEEeccHHHHHHH
Confidence 45578889965433321 2455666665555 6899999999888654
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=90.38 E-value=0.069 Score=46.33 Aligned_cols=33 Identities=9% Similarity=-0.017 Sum_probs=23.5
Q ss_pred CCcEEEEeCCCCC-CCHHHHHHHHHHHHHHHHcC
Q 016804 251 EPEVLLYDEPTAG-LDPIASTVVEDLIRSVHKKG 283 (382)
Q Consensus 251 ~P~iLLLDEPtag-LD~~~~~~l~~lL~~l~~~g 283 (382)
..++|++|+--.= -++..+..+..++..+.+.+
T Consensus 97 ~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~ 130 (213)
T d1l8qa2 97 SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLE 130 (213)
T ss_dssp TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTT
T ss_pred hccchhhhhhhhhcCchHHHHHHHHHHHHHhhcc
Confidence 3788888876432 24667777888888887766
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=90.37 E-value=0.073 Score=47.79 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=20.4
Q ss_pred CcEEEEEcCCCccHHHHHHHHHc
Q 016804 117 GEAVGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 117 Ge~vaLiGpNGaGKSTLLklI~G 139 (382)
..+++|.|.-|.|||||.+.+..
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998864
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=90.37 E-value=0.053 Score=47.34 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
++.|-|.=||||||||+-+..-
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 5778999999999999998874
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=90.18 E-value=0.059 Score=49.14 Aligned_cols=36 Identities=19% Similarity=0.125 Sum_probs=28.0
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccE
Q 016804 112 FKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE 147 (382)
Q Consensus 112 l~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG~ 147 (382)
+.|-+|+..+|+|++|+|||+|+..++--..-+...
T Consensus 62 ~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~~~~~~v 97 (276)
T d1fx0a3 62 IPVGRGQRELIIGDRQTGKTAVATDTILNQQGQNVI 97 (276)
T ss_dssp SCCBTTCBCBEEESSSSSHHHHHHHHHHTCCTTTCE
T ss_pred ccccCCceEeeccCCCCChHHHHHHHHhhhcccCce
Confidence 578999999999999999999998655444333333
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=89.77 E-value=0.088 Score=45.84 Aligned_cols=44 Identities=14% Similarity=0.169 Sum_probs=29.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEccCHHHH
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTI 306 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~~g~~~~~~~~~~~tiIivTHdl~~~ 306 (382)
+.+++|+||.=. |...++..+...|.+... ...+|++|++.+-+
T Consensus 115 ~~kviiIde~d~-l~~~~q~~Llk~lE~~~~-----------~~~~il~tn~~~~i 158 (239)
T d1njfa_ 115 RFKVYLIDEVHM-LSRHSFNALLKTLEEPPE-----------HVKFLLATTDPQKL 158 (239)
T ss_dssp SSEEEEEETGGG-SCHHHHHHHHHHHHSCCT-----------TEEEEEEESCGGGS
T ss_pred CCEEEEEECccc-CCHHHHHHHHHHHhcCCC-----------CeEEEEEcCCcccc
Confidence 357999999854 777777666555543211 15789999887554
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=89.57 E-value=0.079 Score=47.50 Aligned_cols=33 Identities=30% Similarity=0.515 Sum_probs=26.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC-----------CCCccEEEEC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL-----------APDKGEVYIR 151 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~-----------~p~sG~I~i~ 151 (382)
.+||||-.-+|||||++.|++-- .|.-|.|.+.
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~ 47 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMP 47 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECC
T ss_pred eEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecc
Confidence 58999999999999999999653 3455887654
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=89.06 E-value=0.11 Score=44.57 Aligned_cols=23 Identities=22% Similarity=0.353 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
.+-+.||.|+||||+.+.++..+
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~~l 48 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSRYL 48 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHhc
Confidence 47789999999999999998754
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=88.00 E-value=0.12 Score=46.66 Aligned_cols=22 Identities=32% Similarity=0.375 Sum_probs=19.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGL 140 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl 140 (382)
-+.||||.|+|||++++-++..
T Consensus 41 n~lLVG~~GvGKTalv~~la~r 62 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWR 62 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEECCCCCcHHHHHHHHHHH
Confidence 4679999999999999988864
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=87.57 E-value=0.14 Score=44.19 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=19.7
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q 016804 120 VGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+.||||.|.|||+++.-|+..+
T Consensus 46 ~lLvG~pGVGKTalv~~LA~ri 67 (195)
T d1jbka_ 46 PVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEecCCcccHHHHHHHHHHH
Confidence 5799999999999999998754
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=87.55 E-value=0.19 Score=46.82 Aligned_cols=31 Identities=26% Similarity=0.348 Sum_probs=24.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCccEEE
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~ 149 (382)
.+.|=|+=|+||||+++.|+.-+....+.+.
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~~ 38 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGGSPTLY 38 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCSSCEEE
T ss_pred EEEEECCccCCHHHHHHHHHHHhccCCCeEE
Confidence 4678899999999999999987765433333
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=87.43 E-value=0.13 Score=46.30 Aligned_cols=32 Identities=31% Similarity=0.509 Sum_probs=27.2
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc
Q 016804 114 IRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG 146 (382)
Q Consensus 114 i~~Ge~vaLiGpNGaGKSTLLklI~Gl~~p~sG 146 (382)
.++--++.|.||-++||||++++|+.++ ++.|
T Consensus 101 ~~k~n~~~l~G~~~tGKS~f~~~i~~~l-g~~~ 132 (267)
T d1u0ja_ 101 FGKRNTIWLFGPATTGKTNIAEAIAHTV-PFYG 132 (267)
T ss_dssp STTCCEEEEECSTTSSHHHHHHHHHHHS-SCEE
T ss_pred CCccEEEEEEcCCCCCHHHHHHHHHHHh-cchh
Confidence 3566788999999999999999999998 5544
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.40 E-value=0.085 Score=48.27 Aligned_cols=29 Identities=31% Similarity=0.288 Sum_probs=24.6
Q ss_pred eeEEEeCCcEEEEEcCCCccHHHHHHHHH
Q 016804 110 VSFKIRHGEAVGIIGPSGTGKSTILKIIA 138 (382)
Q Consensus 110 vsl~i~~Ge~vaLiGpNGaGKSTLLklI~ 138 (382)
.=+.+-+|+..+|+|+.|+|||||+.-++
T Consensus 61 ~l~pig~GQr~~If~~~g~GKt~ll~~~~ 89 (285)
T d2jdia3 61 SLVPIGRGQRELIIGDRQTGKTSIAIDTI 89 (285)
T ss_dssp HHSCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred cccCccCCCEEEeecCCCCChHHHHHHHH
Confidence 33579999999999999999999976444
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=87.29 E-value=0.15 Score=47.43 Aligned_cols=33 Identities=18% Similarity=0.306 Sum_probs=24.5
Q ss_pred EeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 108 RGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 108 ~~vsl~i~~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+-+-...++| ++.++||.|+|||.|.+.|++-.
T Consensus 115 ~~~~~~~~~g-~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 115 EFGGHRYASG-MVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp EETTEEEESE-EEEEECSSSSCHHHHHHHHHHHH
T ss_pred HHhhcccCCc-eEEEECCCCccHHHHHHHHHHHh
Confidence 3333556666 45567999999999999999753
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=86.98 E-value=0.14 Score=47.05 Aligned_cols=34 Identities=26% Similarity=0.475 Sum_probs=25.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC-CCccEEEECC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLLA-PDKGEVYIRG 152 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~~-p~sG~I~i~G 152 (382)
.+.++||+|+|||.|.+.|+-.+. ....-+.++.
T Consensus 55 ~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~ 89 (315)
T d1qvra3 55 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDM 89 (315)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECT
T ss_pred EEEEECCCcchHHHHHHHHHHHhcCCCcceEEEec
Confidence 467899999999999999998763 2334566664
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=86.73 E-value=0.16 Score=43.38 Aligned_cols=22 Identities=41% Similarity=0.638 Sum_probs=19.7
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q 016804 120 VGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
+||+|.-++|||||++.|.+..
T Consensus 6 i~iiGHvd~GKSTL~~~l~~~~ 27 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITKIL 27 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHHH
Confidence 7899999999999999998653
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=86.62 E-value=0.16 Score=47.71 Aligned_cols=27 Identities=30% Similarity=0.673 Sum_probs=22.3
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCC
Q 016804 114 IRHGEAVGIIGPSGTGKSTILKIIAGLL 141 (382)
Q Consensus 114 i~~Ge~vaLiGpNGaGKSTLLklI~Gl~ 141 (382)
++++.+. ++||+|+|||-|.|.|+.+.
T Consensus 66 ~p~~niL-fiGPTGvGKTElAk~LA~~~ 92 (364)
T d1um8a_ 66 LSKSNIL-LIGPTGSGKTLMAQTLAKHL 92 (364)
T ss_dssp CCCCCEE-EECCTTSSHHHHHHHHHHHT
T ss_pred CCCccee-eeCCCCccHHHHHHHHHhhc
Confidence 4555554 78999999999999999876
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=85.37 E-value=0.2 Score=43.27 Aligned_cols=41 Identities=12% Similarity=0.190 Sum_probs=30.0
Q ss_pred HHHHHHHHhcCCCCCCCCCcEEE----EeCCCCCCCHHHHHHHHHHHHHHHHc
Q 016804 234 RVALARSIIFDNTKESVEPEVLL----YDEPTAGLDPIASTVVEDLIRSVHKK 282 (382)
Q Consensus 234 RVaIArAL~~~~~~~a~~P~iLL----LDEPtagLD~~~~~~l~~lL~~l~~~ 282 (382)
-+.+++++- -+++++ +|.....-|......+.+.+.++...
T Consensus 132 ~l~~~~~~~--------~~~iIv~iNK~D~~~~~~~~~~~~~v~~~i~~~~~~ 176 (224)
T d1jnya3 132 HIILAKTMG--------LDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRS 176 (224)
T ss_dssp HHHHHHHTT--------CTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC--------CCceEEEEEcccCCCccccHHHHHHHHHHHHhHHHh
Confidence 566777763 377887 89888888887777777777776543
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=85.23 E-value=0.18 Score=46.70 Aligned_cols=20 Identities=40% Similarity=0.655 Sum_probs=17.9
Q ss_pred eCCcEEEEEcCCCccHHHHH
Q 016804 115 RHGEAVGIIGPSGTGKSTIL 134 (382)
Q Consensus 115 ~~Ge~vaLiGpNGaGKSTLL 134 (382)
+.|++..+.|-||+|||||-
T Consensus 12 ~~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 12 EKGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp TTSCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEEccCCCCcccce
Confidence 36899999999999999976
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=85.10 E-value=0.21 Score=46.42 Aligned_cols=32 Identities=19% Similarity=0.243 Sum_probs=24.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCccEEEE
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~~p~sG~I~i 150 (382)
.+.|=|+=||||||+++.|+--+......|.+
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~~~g~~v~~ 38 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFAITPNRILL 38 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTTTSGGGEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCceEE
Confidence 47888999999999999999877654334443
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=84.73 E-value=0.18 Score=46.75 Aligned_cols=19 Identities=42% Similarity=0.679 Sum_probs=17.2
Q ss_pred CCcEEEEEcCCCccHHHHH
Q 016804 116 HGEAVGIIGPSGTGKSTIL 134 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLL 134 (382)
.|++..+.|.||+|||||-
T Consensus 13 ~~~valffGLSGTGKTTLs 31 (318)
T d1j3ba1 13 EGDVAVFFGLSGTGKTTLS 31 (318)
T ss_dssp TCCEEEEEECTTSCHHHHT
T ss_pred CCCEEEEEccCCCCccccc
Confidence 4889999999999999975
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=84.59 E-value=0.19 Score=46.75 Aligned_cols=24 Identities=38% Similarity=0.547 Sum_probs=19.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 016804 119 AVGIIGPSGTGKSTILKIIAGLLA 142 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLLklI~Gl~~ 142 (382)
.++|=|+=||||||+++.|+-.+.
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC---
T ss_pred EEEEECCcCCCHHHHHHHHHHHhC
Confidence 377889999999999999986543
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=83.62 E-value=0.082 Score=40.69 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=17.9
Q ss_pred EeCCcEEEEEcCCCccHHHHH
Q 016804 114 IRHGEAVGIIGPSGTGKSTIL 134 (382)
Q Consensus 114 i~~Ge~vaLiGpNGaGKSTLL 134 (382)
+++|+.+.|.+|.|||||+..
T Consensus 4 l~~~~~~il~~~tGsGKT~~~ 24 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRF 24 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTH
T ss_pred HHcCCcEEEEcCCCCChhHHH
Confidence 468999999999999999544
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=83.18 E-value=0.2 Score=44.00 Aligned_cols=16 Identities=19% Similarity=0.561 Sum_probs=13.2
Q ss_pred EEEEEcCCCccHHHHH
Q 016804 119 AVGIIGPSGTGKSTIL 134 (382)
Q Consensus 119 ~vaLiGpNGaGKSTLL 134 (382)
-+.|+|+-||||||+|
T Consensus 16 ~~lI~g~aGTGKTt~l 31 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVI 31 (306)
T ss_dssp EEEECCCTTSCHHHHH
T ss_pred CEEEEeeCCccHHHHH
Confidence 3579999999999754
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=83.02 E-value=0.23 Score=44.20 Aligned_cols=15 Identities=33% Similarity=0.671 Sum_probs=12.9
Q ss_pred EEEEcCCCccHHHHH
Q 016804 120 VGIIGPSGTGKSTIL 134 (382)
Q Consensus 120 vaLiGpNGaGKSTLL 134 (382)
+.|.|+-||||||.|
T Consensus 27 ~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 27 LLIMAGAGSGKTRVL 41 (318)
T ss_dssp EEEEECTTSCHHHHH
T ss_pred EEEEecCCccHHHHH
Confidence 568899999999765
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=82.19 E-value=0.28 Score=45.45 Aligned_cols=19 Identities=42% Similarity=0.691 Sum_probs=17.7
Q ss_pred CCcEEEEEcCCCccHHHHH
Q 016804 116 HGEAVGIIGPSGTGKSTIL 134 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLL 134 (382)
.|++..+.|-||+|||||-
T Consensus 13 ~gd~alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 13 QGDVTVFFGLSGTGKTTLS 31 (323)
T ss_dssp TCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEEccCCCCcccce
Confidence 6888899999999999998
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=81.89 E-value=0.46 Score=42.18 Aligned_cols=28 Identities=29% Similarity=0.278 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCCC
Q 016804 117 GEAVGIIGPSGTGKSTILKIIAGLLAPD 144 (382)
Q Consensus 117 Ge~vaLiGpNGaGKSTLLklI~Gl~~p~ 144 (382)
+-.+++||-.-+|||||+|.|.|-....
T Consensus 112 ~~~v~vvG~PNvGKSsliN~L~~~~~~~ 139 (273)
T d1puja_ 112 AIRALIIGIPNVGKSTLINRLAKKNIAK 139 (273)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC-
T ss_pred ceEEEEEecCccchhhhhhhhhccceEE
Confidence 3459999999999999999999976543
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=81.70 E-value=0.35 Score=41.99 Aligned_cols=20 Identities=25% Similarity=0.262 Sum_probs=18.3
Q ss_pred EEEEcCCCccHHHHHHHHHc
Q 016804 120 VGIIGPSGTGKSTILKIIAG 139 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~G 139 (382)
++++|.-.+|||||+..|+.
T Consensus 12 i~viGHVd~GKSTL~~~Ll~ 31 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLH 31 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 78999999999999999953
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=81.05 E-value=0.6 Score=43.44 Aligned_cols=20 Identities=35% Similarity=0.423 Sum_probs=17.4
Q ss_pred CCcEEEEEcCCCccHHHHHH
Q 016804 116 HGEAVGIIGPSGTGKSTILK 135 (382)
Q Consensus 116 ~Ge~vaLiGpNGaGKSTLLk 135 (382)
.+.++.|.||-|+||||++.
T Consensus 162 ~~~~~vI~G~pGTGKTt~i~ 181 (359)
T d1w36d1 162 TRRISVISGGPGTGKTTTVA 181 (359)
T ss_dssp TBSEEEEECCTTSTHHHHHH
T ss_pred cCCeEEEEcCCCCCceehHH
Confidence 36799999999999999874
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=80.97 E-value=0.29 Score=38.24 Aligned_cols=30 Identities=10% Similarity=0.205 Sum_probs=21.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 016804 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHK 281 (382)
Q Consensus 251 ~P~iLLLDEPtagLD~~~~~~l~~lL~~l~~ 281 (382)
+-+++|+||-= .+|..+...+..+++.+..
T Consensus 94 ~~~~vIiDE~H-~~~~~~~~~~~~~l~~~~~ 123 (136)
T d1a1va1 94 AYDIIICDECH-STDATSILGIGTVLDQAET 123 (136)
T ss_dssp CCSEEEEETTT-CCSHHHHHHHHHHHHHTTT
T ss_pred cCCEEEEeccc-ccCHHHHHHHHHHHHHHHH
Confidence 58999999985 4688777666666665543
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.87 E-value=0.35 Score=45.03 Aligned_cols=23 Identities=26% Similarity=0.554 Sum_probs=20.1
Q ss_pred EEEEcCCCccHHHHHHHHH---cCCC
Q 016804 120 VGIIGPSGTGKSTILKIIA---GLLA 142 (382)
Q Consensus 120 vaLiGpNGaGKSTLLklI~---Gl~~ 142 (382)
+||+|.-|+|||||+..|. |...
T Consensus 20 I~iiGhvd~GKTTL~d~Ll~~~g~i~ 45 (341)
T d1n0ua2 20 MSVIAHVDHGKSTLTDSLVQRAGIIS 45 (341)
T ss_dssp EEEECCGGGTHHHHHHHHHHHHBCCB
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcc
Confidence 8999999999999999994 6543
|