Citrus Sinensis ID: 016838

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-
Protein Sequence
MATLFLSSSFLLPLSSHKLWQWHPPRKHLSFTICCASSSSSNKSSSSSSSSSRSSRKVKSNEELYNDLREFLSTVGLSESHVPSMKELSAHGRDDLANIVRRRGYKFIRQLLKSSTKPGFNGFVAEKSLAESLSDPSFVGEVSPNLNGHYEKADMEEKVANFIQNGDLDIIEDRAMILNGSALTSKQIASFATVNHPLSEDHLGTGVEGADFDSSEARRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKGGICNNILRVI
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccHHHHHcccccccccccccccccccccccccccccccccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccEEEEEEEcccccEEEEEEccccccccccccccccccccccccccccccEEEEEEcccEEEEEEEEEccEEEEccccccccccccccEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccEcccccccccccccccccEcEEEEcEcccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccHccccHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccccEEEEEEEccccccccccccccccccccccccccccEEEEEEEccccEEEEEEEEccEEEEccccccccccccEcEEEEEc
Coil and Loop (DISEMBL)
MATLFLSSsfllplsshklwqwhpprkhlsfticcasssssnksssssssssrssrkvksnEELYNDLREFLSTvglseshvpsmkelsahgrddLANIVRRRGYKFIRQLLKsstkpgfngfVAEKSLaeslsdpsfvgevspnlnghyekaDMEEKVANFIQNGDLDIIEDRAMILNGSALTSKQIASFatvnhplsedhlgtgvegadfdsseaRRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVEIQYSGDGEIVEVagsfngwhhrikmdplpsssiiepirsrkSRLWSTVLWLYPGTYEIKFIVdgqwkvdpqresvtkggicnnilrvi
Flexible Loop (DISEMBL)
MATLFLSSSFLLPLSSHKLWQWHPPRKHLSFTICCASssssnksssssssssrssrkvksnEELYNDLREFLSTVGLSESHVPSMkelsahgrddlaNIVRRRGYKFIRQLlksstkpgfNGFVAEKSLAESLSDPSFVGEVSPNLNGHYEKADMEEKVANFIQNGDLDIIEDRAMILNGSALTSKQIASFATVNHPLSEDHLGTGVEGADFDSSEARRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALsvlqtkavteinkaeklisdkdeELIAAEESLSGLEVVEIQYSGDGEIVEVAGSFNGWHHrikmdplpsssiiepirsrksrlwSTVLWLYPGTYEIKFIVDGQWKVDpqresvtkggicnnilrvi
Low Complexity Region (SEG)
MATlflsssfllplssHKLWQWHPPRKHLSFTICCAsssssnksssssssssrssrkvksnEELYNDLREFLSTVGLSESHVPSMKELSAHGRDDLANIVRRRGYKFIRQLLKSSTKPGFNGFVAEKSLAESLSDPSFVGEVSPNLNGHYEKADMEEKVANFIQNGDLDIIEDRAMILNGSALTSKQIASFATVNHPLSEDHLGTGVEGADFDSSEARRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDplpsssiiepirsrksrLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKGGICNNILRVI
Disordered region (IsUnstruct)
***LFLSSSFLLPLSSHKLWQWHPPRKHLSFTICCA**********************************************************DLANIVRRRGYKFIRQLLKSSTKPGFNGFV********************************EKVANFIQNGDLDIIEDRAMILNGSALTSKQIASFATVN*********************************LKFML******************LALSVLQTKAVTEINKA**LI******LIAAEESLSGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKGGICNNILR**
Disordered Region (DISOPRED)
*******SSFLLPLSSHKLWQWHPPRKHLSFTICC****************************LYNDLREFLSTVGLSESHVPSMKELSAHGRDDLANIVRRRGYKF*************NGFVAEKS**************************************************************************************************************************************************************SGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSS******SRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKGGICNNILRVI
Disordered Region (DISEMBL)
MATLFLSSSFLLPLSSHKLWQWHPPRKHLSFTIC***************************EELYNDLREFLSTVGLSESHVPSMKELSAHGRDDLANIVRRRGYKFIRQLLKSSTKPGFNGFVAEKSLAESLSDPSFVGEVSPNLNGHYEKADMEEKVANFIQNGDLDIIEDRAMILNGSALTSKQIASFATVNHPLSEDHLGTGVEGADFDSSEARRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKGGICNNILRVI
Disordered Region (DISPRO)
**TLFLSSSFLLPLSSHKLWQWHPPRKHLSFTICCASS********************KSNEELYNDLREFLSTVGLSESHVPSMKELSAHGRDDLANIVRRRGYKFIRQLLKSSTKPGFNGFVAEKSLAESLSDPSFVGEVSPNLN***EKADMEEKVANFIQNGDLDIIEDRAMILNGSALTSKQIASFATVNHPLSEDHLGTGVEGADFDSSEARRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKGGICNNILRVI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATLFLSSSFLLPLSSHKLWQWHPPRKHLSFTICCASSSSSNKSSSSSSSSSRSSRKVKSNEELYNDLREFLSTVGLSESHVPSMKELSAHGRDDLANIVRRRGYKFIRQLLKSSTKPGFNGFVAEKSLAESLSDPSFVGEVSPNLNGHYEKADMEEKVANFIQNGDLDIIEDRAMILNGSALTSKQIASFATVNHPLSEDHLGTGVEGADFDSSEARRRENQLExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAVTExxxxxxxxxxxxxxxxxxxxxLSGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKGGICNNILRVI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	381	2.2.26 [Sep-21-2011]
Q9R078	270	5'-AMP-activated protein	yes	no	0.270	0.381	0.296	8e-05
P80386	270	5'-AMP-activated protein	yes	no	0.270	0.381	0.304	0.0001
P78789	298	Uncharacterized protein C	yes	no	0.136	0.174	0.363	0.0002
O43741	272	5'-AMP-activated protein	yes	no	0.194	0.272	0.340	0.0004
Q9QZH4	271	5'-AMP-activated protein	no	no	0.194	0.273	0.340	0.0005
Q6PAM0	271	5'-AMP-activated protein	no	no	0.194	0.273	0.340	0.0005
Q9Y478	270	5'-AMP-activated protein	no	no	0.259	0.366	0.297	0.0006
Q5R801	270	5'-AMP-activated protein	yes	no	0.191	0.270	0.340	0.0006
Q5BIS9	270	5'-AMP-activated protein	no	no	0.191	0.270	0.329	0.0006
P80387	122	5'-AMP-activated protein	no	no	0.191	0.598	0.340	0.0006

>sp|Q9R078|AAKB1_MOUSE 5'-AMP-activated protein kinase subunit beta-1 OS=Mus musculus GN=Prkab1 PE=1 SV=2

 Score = 48.5 bits (114), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 22/125 (17%)

Query: 264 EINKAEKLISDKDEELIAAEESLSGLEVVEIQ-------YSGDGEIVEVAGSFNGWHHRI 316
           +I  +E++ + + EE +A +  L   +    Q       ++G G+ V ++GSFN W    
Sbjct: 45  DIFHSEEIKAPEKEEFLAWQHDLEANDKAPAQARPTVFRWTGGGKEVYLSGSFNNWSKL- 103

Query: 317 KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVT-KGGICN 375
              PL          +R    +  +L L  G ++ KF VDGQW  DP    VT + G  N
Sbjct: 104 ---PL----------TRSQNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVN 150

Query: 376 NILRV 380
           NI++V
Sbjct: 151 NIIQV 155

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).
Mus musculus (taxid: 10090)

>sp|P80386|AAKB1_RAT 5'-AMP-activated protein kinase subunit beta-1 OS=Rattus norvegicus GN=Prkab1 PE=1 SV=4

 Score = 48.1 bits (113), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 22/125 (17%)

Query: 264 EINKAEKLISDKDEELIAAEESLSGLEVVEIQ-------YSGDGEIVEVAGSFNGWHHRI 316
           +I   E++ + + EE +A +  L   E    Q       ++G G+ V ++GSFN W    
Sbjct: 45  DIFHTEEMKAPEKEEFLAWQHDLEVNEKAPAQARPTVFRWTGGGKEVYLSGSFNNWSKL- 103

Query: 317 KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVT-KGGICN 375
              PL          +R    +  +L L  G ++ KF VDGQW  DP    VT + G  N
Sbjct: 104 ---PL----------TRSQNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVN 150

Query: 376 NILRV 380
           NI++V
Sbjct: 151 NIIQV 155

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Rattus norvegicus (taxid: 10116)

>sp|P78789|YC63_SCHPO Uncharacterized protein C1919.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1919.03c PE=1 SV=2

 Score = 47.4 bits (111), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 14/66 (21%)

Query: 294 IQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKF 353
           I++ G GE+V V GSF+ W  +I++               KS  ++ +L L PGT   KF
Sbjct: 103 IRWRGGGEVVYVTGSFSRWKKKIQL--------------LKSEDYTVLLQLRPGTQRFKF 148

Query: 354 IVDGQW 359
           +VDG W
Sbjct: 149 LVDGIW 154

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|O43741|AAKB2_HUMAN 5'-AMP-activated protein kinase subunit beta-2 OS=Homo sapiens GN=PRKAB2 PE=1 SV=1

 Score = 46.2 bits (108), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 14/88 (15%)

Query: 294 IQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKF 353
           I++S  G+ V ++GSFN W  +I +           I+S     +  +L L  G ++ KF
Sbjct: 81  IRWSEGGKEVFISGSFNNWSTKIPL-----------IKSHND--FVAILDLPEGEHQYKF 127

Query: 354 IVDGQWKVDPQRESVT-KGGICNNILRV 380
            VDGQW  DP    VT + G  NN++ V
Sbjct: 128 FVDGQWVHDPSEPVVTSQLGTINNLIHV 155

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Homo sapiens (taxid: 9606)

>sp|Q9QZH4|AAKB2_RAT 5'-AMP-activated protein kinase subunit beta-2 OS=Rattus norvegicus GN=Prkab2 PE=1 SV=1

 Score = 45.8 bits (107), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 14/88 (15%)

Query: 294 IQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKF 353
           I++S  G+ V ++GSFN W  +I +           I+S     +  +L L  G ++ KF
Sbjct: 80  IRWSEGGKEVFISGSFNNWSTKIPL-----------IKSHND--FVAILDLPEGEHQYKF 126

Query: 354 IVDGQWKVDPQRESVT-KGGICNNILRV 380
            VDGQW  DP    VT + G  NN++ V
Sbjct: 127 FVDGQWVHDPSEPVVTSQLGTINNLIHV 154

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Rattus norvegicus (taxid: 10116)

>sp|Q6PAM0|AAKB2_MOUSE 5'-AMP-activated protein kinase subunit beta-2 OS=Mus musculus GN=Prkab2 PE=1 SV=1

 Score = 45.8 bits (107), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 14/88 (15%)

Query: 294 IQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKF 353
           I++S  G+ V ++GSFN W  +I +           I+S     +  +L L  G ++ KF
Sbjct: 80  IRWSEGGKEVFISGSFNNWSTKIPL-----------IKSHND--FVAILDLPEGEHQYKF 126

Query: 354 IVDGQWKVDPQRESVT-KGGICNNILRV 380
            VDGQW  DP    VT + G  NN++ V
Sbjct: 127 FVDGQWVHDPSEPVVTSQLGTINNLIHV 154

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Mus musculus (taxid: 10090)

>sp|Q9Y478|AAKB1_HUMAN 5'-AMP-activated protein kinase subunit beta-1 OS=Homo sapiens GN=PRKAB1 PE=1 SV=4

 Score = 45.8 bits (107), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 22/121 (18%)

Query: 268 AEKLISDKDEELIAAEESLSGLEVVEIQ-------YSGDGEIVEVAGSFNGWHHRIKMDP 320
           +E++ + + EE +A +  L   +    Q       ++G G+ V ++GSFN W       P
Sbjct: 49  SEEIKAPEKEEFLAWQHDLEVNDKAPAQARPTVFRWTGGGKEVYLSGSFNNWSKL----P 104

Query: 321 LPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVT-KGGICNNILR 379
           L          +R    +  +L L  G ++ KF VDGQW  DP    VT + G  NNI++
Sbjct: 105 L----------TRSHNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQ 154

Query: 380 V 380
           V
Sbjct: 155 V 155

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Homo sapiens (taxid: 9606)

>sp|Q5R801|AAKB1_PONAB 5'-AMP-activated protein kinase subunit beta-1 OS=Pongo abelii GN=PRKAB1 PE=2 SV=3

 Score = 45.8 bits (107), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 15/88 (17%)

Query: 294 IQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKF 353
            +++G G+ V ++GSFN W       PL          +R    +  +L L  G ++ KF
Sbjct: 82  FRWTGGGKEVYLSGSFNNWSKL----PL----------TRSHNNFVAILDLPEGEHQYKF 127

Query: 354 IVDGQWKVDPQRESVT-KGGICNNILRV 380
            VDGQW  DP    VT + G  NNI++V
Sbjct: 128 FVDGQWTHDPSEPIVTSQLGTVNNIIQV 155

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Pongo abelii (taxid: 9601)

>sp|Q5BIS9|AAKB1_BOVIN 5'-AMP-activated protein kinase subunit beta-1 OS=Bos taurus GN=PRKAB1 PE=2 SV=3

 Score = 45.8 bits (107), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 15/88 (17%)

Query: 294 IQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKF 353
            +++G G+ V ++GSFN W       PL          +R    +  +L L  G ++ KF
Sbjct: 82  FRWTGGGKEVYLSGSFNNWSKL----PL----------TRSHNNFVAILDLPEGEHQYKF 127

Query: 354 IVDGQWKVDPQRESVT-KGGICNNILRV 380
            VDGQW  DP    VT + G  NN+++V
Sbjct: 128 FVDGQWTHDPSEPVVTSQLGTVNNVIQV 155

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Bos taurus (taxid: 9913)

>sp|P80387|AAKB1_PIG 5'-AMP-activated protein kinase subunit beta-1 (Fragment) OS=Sus scrofa GN=PRKAB1 PE=1 SV=1

 Score = 45.4 bits (106), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 15/88 (17%)

Query: 294 IQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKF 353
            +++G G+ V ++GSFN W        LP         +R    +  +L L  G ++ KF
Sbjct: 47  FRWTGGGKEVYLSGSFNNW------SKLP--------LTRSHNNFVAILDLPEGEHQYKF 92

Query: 354 IVDGQWKVDPQRESVT-KGGICNNILRV 380
           +VDGQW  DP    VT + G  NNI++V
Sbjct: 93  LVDGQWTHDPSEPVVTSQLGTVNNIIQV 120

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Sus scrofa (taxid: 9823)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	381
297739960	471	unnamed protein product [Vitis vinifera]	0.879	0.711	0.513	1e-104
255556890	612	hypothetical protein RCOM_1354150 [Ricin	0.595	0.370	0.562	2e-76
224068793	626	predicted protein [Populus trichocarpa]	0.666	0.405	0.512	3e-75
356545991	622	PREDICTED: uncharacterized protein LOC10	0.671	0.411	0.563	2e-73
449451223	649	PREDICTED: uncharacterized protein LOC10	0.624	0.366	0.498	4e-67
186519755	598	5'-AMP-activated protein kinase-like pro	0.577	0.367	0.526	2e-59
297806299	636	hypothetical protein ARALYDRAFT_487117 [	0.577	0.345	0.505	3e-59
7378624	583	putative protein [Arabidopsis thaliana]	0.427	0.279	0.466	3e-31
168029298	548	predicted protein [Physcomitrella patens	0.425	0.295	0.395	3e-24
297790768	334	hypothetical protein ARALYDRAFT_359028 [	0.204	0.233	0.658	1e-16

>gi|297739960|emb|CBI30142.3| unnamed protein product [Vitis vinifera]

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 217/423 (51%), Positives = 259/423 (61%), Gaps = 88/423 (20%)

Query: 46  SSSSSSSRSSRKVKSNEELYNDLREFLSTVGLSESHVPSMKELSAHGRDDLANIVRRRGY 105
           +SS    R+ RKVKS++EL ND+REF+S VGL E H+PSMKELS HGR DLANIVRRRGY
Sbjct: 47  ASSIKKPRARRKVKSDQELCNDIREFVSAVGLPEGHLPSMKELSQHGRTDLANIVRRRGY 106

Query: 106 KFIRQLLKSSTKPGFNGFVAEKSLAESLS------------------------------- 134
           K I+ LL S+TK   N F   +SL E+                                 
Sbjct: 107 KHIKDLLSSATKTDTNEFDVGESLTENQDATSDYEDESTGQDEKAKDLVEDVPLSSKGSI 166

Query: 135 ----------DPSFVGEVSPNLNGHYEKADMEEKVANFIQNGDLDIIEDR---------- 174
                     DPSF  +    +      +  +EKVA FIQNG+LD IED           
Sbjct: 167 MESGVTNANIDPSFNNDEQSCIRESSTHSSFQEKVAKFIQNGELDTIEDNDYGILSGAAA 226

Query: 175 ----------------------------------AMILNGSALTSKQIASFATVNHPLSE 200
                                             A ILNGS L S QI    T N PL +
Sbjct: 227 EEGKGVIDSENTIELESRPLAELHVEHASSGSNAAKILNGSTLFSDQIVPPVTRNDPLGD 286

Query: 201 DHLGT-GVEGADFDS--SEARRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVL 257
           D   + G+  ADFD+   E    ENQ+E++HLK MLHQKE+ELS+LK+QIEKEKLAL++L
Sbjct: 287 DRFSSEGLISADFDNLGIETNEGENQVEVNHLKLMLHQKELELSQLKKQIEKEKLALTIL 346

Query: 258 QTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVEIQYSGDGEIVEVAGSFNGWHHRIK 317
           QTKA TEI+KA+K++ +KD EL AAEESLSGL+ V+IQYSGDGEIVEVAGSFNGWHHRIK
Sbjct: 347 QTKAETEISKAQKIVLEKDAELNAAEESLSGLKEVQIQYSGDGEIVEVAGSFNGWHHRIK 406

Query: 318 MDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKGGICNNI 377
           MDP PSSS  EP+ SRKSRLWSTVLWLYPG YEIKF++DGQW++DPQ E+VT+G I NNI
Sbjct: 407 MDPQPSSSSKEPVGSRKSRLWSTVLWLYPGLYEIKFVIDGQWRIDPQSETVTRGTIDNNI 466

Query: 378 LRV 380
           LRV
Sbjct: 467 LRV 469

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556890|ref|XP_002519478.1| hypothetical protein RCOM_1354150 [Ricinus communis] gi|223541341|gb|EEF42892.1| hypothetical protein RCOM_1354150 [Ricinus communis]

 Score =  292 bits (747), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 154/274 (56%), Positives = 180/274 (65%), Gaps = 47/274 (17%)

Query: 155 MEEKVANFIQNGDLDIIEDRA--------------------------------------- 175
           +E+KVA FIQ+GDLD IED                                         
Sbjct: 338 LEDKVAKFIQSGDLDAIEDNVYAILDETAEESKGSSEPENETEIQSETPTSENDKHADNG 397

Query: 176 ----MILNGSALTSKQIASFATVNHPLSEDHL-GTGVEGADFDSS---EARRRENQLEID 227
               + LNGS   SK ++     NHP+  D L   G+   + D     E  +REN +EI+
Sbjct: 398 SNAPLALNGSISISKDVSPPMRANHPVRNDELPAEGLASFNVDKDLDVEISKRENHVEIN 457

Query: 228 HLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLS 287
           HLKFMLHQKE+ELS LKEQIEKEK+ALS LQ KA  EI KA+KLIS+KD EL+AAEESLS
Sbjct: 458 HLKFMLHQKELELSHLKEQIEKEKIALSDLQNKAEMEIKKAQKLISEKDAELLAAEESLS 517

Query: 288 GLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG 347
           GL  V+IQY+GDGEIVEVAGSFNGWHHRIKMDP PSSS+ +P  SRKS+LWS +LWLYPG
Sbjct: 518 GLMEVKIQYNGDGEIVEVAGSFNGWHHRIKMDPQPSSSVRDPAASRKSKLWSIMLWLYPG 577

Query: 348 TYEIKFIVDGQWKVDPQRESVTKGGICNNILRVI 381
            YEIKFIVDG W +DPQ E VT+GGICNN+LRVI
Sbjct: 578 VYEIKFIVDGHWTIDPQGEMVTRGGICNNVLRVI 611

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068793|ref|XP_002326201.1| predicted protein [Populus trichocarpa] gi|222833394|gb|EEE71871.1| predicted protein [Populus trichocarpa]

 Score =  288 bits (738), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 159/310 (51%), Positives = 194/310 (62%), Gaps = 56/310 (18%)

Query: 126 EKSLAESLSDPSFVGEVSPNLNGHYEKAD--------MEEKVANFIQNGDLDIIEDR--- 174
           E SL+  +SD  +   V  N++G  +  +        + EKVA FIQNGDLD IED    
Sbjct: 316 EMSLSSGVSDTQYYANVK-NISGLIDNNNSCMPANSSLVEKVAKFIQNGDLDTIEDNVYG 374

Query: 175 -----------------------------------------AMILNGSALTSKQIASFAT 193
                                                    A  LN +  TS Q+    T
Sbjct: 375 LSNGSGSGESKGFREPENMTEDHSKISSEENFENAVGESDTASTLNENLSTSMQVVPSVT 434

Query: 194 VNHPLSEDHLGTGVEGADFDSS---EARRRENQLEIDHLKFMLHQKEMELSRLKEQIEKE 250
           V+  L  +    G+ GAD D     E  +++NQ+EI+HLKF+LHQKE+ELS+LKEQIEKE
Sbjct: 435 VSRALRNESPAEGLAGADVDQDLDIETNKKDNQIEINHLKFILHQKELELSQLKEQIEKE 494

Query: 251 KLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVEIQYSGDGEIVEVAGSFN 310
           KLALS LQTKA  EI+KA+KLIS+KD EL+ AEESLSGL  VE+ Y G+GE+VEVAGSFN
Sbjct: 495 KLALSALQTKAEREISKAQKLISEKDAELLVAEESLSGLVEVEVAYCGNGEMVEVAGSFN 554

Query: 311 GWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTK 370
           GWHH +++DP PSSSI +   SRKSRLWS +LWLYPG YEIKFIVDG W+VDPQ ESVTK
Sbjct: 555 GWHHPVRLDPQPSSSIKDHFGSRKSRLWSAMLWLYPGVYEIKFIVDGHWRVDPQMESVTK 614

Query: 371 GGICNNILRV 380
           GGICNN+LRV
Sbjct: 615 GGICNNVLRV 624

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356545991|ref|XP_003541416.1| PREDICTED: uncharacterized protein LOC100805984 [Glycine max]

 Score =  282 bits (721), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 155/275 (56%), Positives = 196/275 (71%), Gaps = 19/275 (6%)

Query: 124 VAEKSLAESLSDPSFVGEV-------SPNLNGHYEKADMEEKVANFIQNGDLDIIE---- 172
            +E S+ E+LSD + +  +       S NL+       + EKVANFIQNGDLD +E    
Sbjct: 347 TSEVSVRENLSDDNRLNSIVHSADSSSTNLDT-LANLSLREKVANFIQNGDLDPVEGTHL 405

Query: 173 --DRAMILNGSALTSKQIASFATVN--HPLSEDHLGTGVEGADFD---SSEARRRENQLE 225
             D  ++ +G++LTS Q+     ++    L +DHL       DF+    +EA + +N+ E
Sbjct: 406 PEDNNVMAHGNSLTSNQVVPSGALDLDQSLWDDHLPHEDLTTDFNKDLDTEAPKVQNESE 465

Query: 226 IDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEES 285
           I+HLKFML+QKE+ELSRLKEQIEKEKLALSVLQTKA  EI+KA KLIS+KD EL  AEES
Sbjct: 466 INHLKFMLYQKELELSRLKEQIEKEKLALSVLQTKAEAEISKARKLISEKDAELHVAEES 525

Query: 286 LSGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLY 345
           LSGL+ V+I++ GDG++VEVAGSFNGWHHRI+MD   S+S I+   SR SR WST+LWLY
Sbjct: 526 LSGLKEVQIEFCGDGDVVEVAGSFNGWHHRIEMDLQQSTSAIDLDGSRSSRCWSTMLWLY 585

Query: 346 PGTYEIKFIVDGQWKVDPQRESVTKGGICNNILRV 380
           PG YEIKF+VDG+W  DPQRESVT+G ICNNILRV
Sbjct: 586 PGVYEIKFVVDGKWITDPQRESVTRGHICNNILRV 620

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451223|ref|XP_004143361.1| PREDICTED: uncharacterized protein LOC101203013 [Cucumis sativus] gi|449482584|ref|XP_004156334.1| PREDICTED: uncharacterized protein LOC101225132 [Cucumis sativus]

 Score =  261 bits (667), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 142/285 (49%), Positives = 175/285 (61%), Gaps = 47/285 (16%)

Query: 143 SPNLNGHYEKADMEEKVANFIQNGDLDIIEDR---------------------------- 174
           S  L  + E+  + EKVA FIQNGDLDI++D                             
Sbjct: 363 SDKLVKYSEELSLAEKVARFIQNGDLDIVDDNFDATLSESGAGKGNGSVAATNAEESEIN 422

Query: 175 ----------------AMILNGSALTSKQIASFATVNHPLSEDHLGTGVEGADFD---SS 215
                            M  NGSA       S  TV   + ++   T       +    +
Sbjct: 423 FHVEAFSEDTTASRGSLMASNGSASEFDDKVSTTTVGQLIRDNQPSTEALNGQIEKVSGA 482

Query: 216 EARRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDK 275
           E +  ENQ+EID LKFMLHQKE+ELS+LKEQIE++KLALS  Q+KA  EI+ A+KLI ++
Sbjct: 483 EIKVSENQVEIDRLKFMLHQKELELSQLKEQIERDKLALSASQSKAEAEISLAQKLILER 542

Query: 276 DEELIAAEESLSGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKS 335
           D EL+AAEE L GLE V+I YSG+GEIVEVAGSFNGWHH+IKMDP PSS+ ++ + S+K 
Sbjct: 543 DSELVAAEECLYGLEEVQIHYSGEGEIVEVAGSFNGWHHKIKMDPQPSSNHLDSVNSKKH 602

Query: 336 RLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKGGICNNILRV 380
           R WSTVLWLYPG YEIKF+VDG WK+DP RES+TKG I NNILRV
Sbjct: 603 RHWSTVLWLYPGVYEIKFVVDGHWKIDPHRESLTKGAISNNILRV 647

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186519755|ref|NP_195962.2| 5'-AMP-activated protein kinase-like protein [Arabidopsis thaliana] gi|332003218|gb|AED90601.1| 5'-AMP-activated protein kinase-like protein [Arabidopsis thaliana]

 Score =  236 bits (601), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 137/260 (52%), Positives = 159/260 (61%), Gaps = 40/260 (15%)

Query: 155 MEEKVANFIQNGDLDII-EDRAMI--------------------------------LNGS 181
           +EEK   FIQNG LD +  D   I                                LNGS
Sbjct: 342 IEEKTTRFIQNGYLDTVGADENDIPNESCPEESSETTKGGEYIGDSLGGPRIMSTPLNGS 401

Query: 182 ALTSKQIASFATVNHPLSEDHLGTGVEGADFDSS-EARRRENQLEIDHLKFMLHQKEMEL 240
           AL  K+I     VN          G  G D D   E R+RENQ+EID L+FML QKE+EL
Sbjct: 402 ALALKEIIHATEVNSSDRNSDQRDGSVGLDTDPHHETRKRENQVEIDRLRFMLDQKELEL 461

Query: 241 SRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVEIQYSGDG 300
           SRLKEQIEKEKL+LSVLQ +A TEI KA+ LIS+K+ EL  AEESLSGL+ V I+Y GDG
Sbjct: 462 SRLKEQIEKEKLSLSVLQRQAETEIQKAQMLISEKEVELQEAEESLSGLQEVVIEYCGDG 521

Query: 301 EIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWK 360
             VEV GSFNGW HR+ M+   S SI       K + WST+LWLYPGTYEIKFIVDGQW 
Sbjct: 522 NAVEVTGSFNGWQHRVGMELQASKSI------GKQKCWSTLLWLYPGTYEIKFIVDGQWI 575

Query: 361 VDPQRESVTKGGICNNILRV 380
            DPQ++SVT+G I NNIL+V
Sbjct: 576 TDPQKDSVTRGHISNNILKV 595

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297806299|ref|XP_002871033.1| hypothetical protein ARALYDRAFT_487117 [Arabidopsis lyrata subsp. lyrata] gi|297316870|gb|EFH47292.1| hypothetical protein ARALYDRAFT_487117 [Arabidopsis lyrata subsp. lyrata]

 Score =  235 bits (599), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 133/263 (50%), Positives = 160/263 (60%), Gaps = 43/263 (16%)

Query: 155 MEEKVANFIQNGDLDIIEDR------------------------------------AMIL 178
           +EEK   FIQNG LD ++D                                     +M  
Sbjct: 378 IEEKTTRFIQNGYLDTVDDDENGIPNESCPEDTKEGVETTKGGAYIGDSYGGQRSISMPP 437

Query: 179 NGSALTSKQIASFATVNHPLSEDHLGTGVEGADFDS-SEARRRENQLEIDHLKFMLHQKE 237
           NGSAL  +++     +N          G    D DS  E  +RENQ+EID L+FMLHQKE
Sbjct: 438 NGSALALEEVTHAKELNSSDRNSDQRDGSADLDTDSHDETMKRENQVEIDRLRFMLHQKE 497

Query: 238 MELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVEIQYS 297
           +ELSRLKEQIEKEKL+LSVLQ +A TEI KA+ LIS+K+ EL  AEESLSGL+ V I+Y 
Sbjct: 498 LELSRLKEQIEKEKLSLSVLQRQAETEIQKAQMLISEKEVELRDAEESLSGLQEVVIEYC 557

Query: 298 GDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDG 357
           GDG +VEV GSFNGW HR+ M+   S SI       K + WST+LWLYPGTYEIKFIVDG
Sbjct: 558 GDGNVVEVTGSFNGWQHRVGMELQASKSI------GKQKCWSTLLWLYPGTYEIKFIVDG 611

Query: 358 QWKVDPQRESVTKGGICNNILRV 380
           QW  DPQ++SVT+G I NNIL V
Sbjct: 612 QWITDPQKDSVTRGHITNNILIV 634

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7378624|emb|CAB83300.1| putative protein [Arabidopsis thaliana]

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 96/206 (46%), Positives = 110/206 (53%), Gaps = 43/206 (20%)

Query: 155 MEEKVANFIQNGDLDII-EDRAMI--------------------------------LNGS 181
           +EEK   FIQNG LD +  D   I                                LNGS
Sbjct: 342 IEEKTTRFIQNGYLDTVGADENDIPNESCPEESSETTKGGEYIGDSLGGPRIMSTPLNGS 401

Query: 182 ALTSKQIASFATVNHPLSEDHLGTGVEGADFDSS-EARRRENQLEIDHLKFMLHQKEMEL 240
           AL  K+I     VN          G  G D D   E R+RENQ+EID L+FML QKE+EL
Sbjct: 402 ALALKEIIHATEVNSSDRNSDQRDGSVGLDTDPHHETRKRENQVEIDRLRFMLDQKELEL 461

Query: 241 SRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVEIQYSGDG 300
           SRLKEQIEKEK         A TEI KA+ LIS+K+ EL  AEESLSGL+ V I+Y GDG
Sbjct: 462 SRLKEQIEKEK---------AETEIQKAQMLISEKEVELQEAEESLSGLQEVVIEYCGDG 512

Query: 301 EIVEVAGSFNGWHHRIKMDPLPSSSI 326
             VEV GSFNGW HR+ M+   S SI
Sbjct: 513 NAVEVTGSFNGWQHRVGMELQASKSI 538

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168029298|ref|XP_001767163.1| predicted protein [Physcomitrella patens subsp. patens] gi|162681659|gb|EDQ68084.1| predicted protein [Physcomitrella patens subsp. patens]

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 66/167 (39%), Positives = 103/167 (61%), Gaps = 5/167 (2%)

Query: 217 ARRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKD 276
           A R +++ E+  L  +LH +EME  ++  ++E+ K  L++++ K   E+ +A+ +  +KD
Sbjct: 382 AGRTDSEAEVARLLALLHAREMENLKVLRELEETKAMLALVRAKHSAEMAQAKLVAVEKD 441

Query: 277 EELIAAEESLSGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPS-SSIIEPIR--SR 333
             L  AE++L  L++ ++ + G+G  VE+ GSFNGW H I++  LP  SS   P+R  + 
Sbjct: 442 LRLQVAEQALQSLKLTQVDWWGEGSRVELGGSFNGWEHHIQL--LPDLSSKSSPVRPGTP 499

Query: 334 KSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKGGICNNILRV 380
              LW   LWLYPG YEIKFIVDG+W +D +RE V      NN+L V
Sbjct: 500 SPLLWRIELWLYPGVYEIKFIVDGKWVLDNRREIVQGHMGQNNLLHV 546

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297790768|ref|XP_002863269.1| hypothetical protein ARALYDRAFT_359028 [Arabidopsis lyrata subsp. lyrata] gi|297309103|gb|EFH39528.1| hypothetical protein ARALYDRAFT_359028 [Arabidopsis lyrata subsp. lyrata]

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/79 (65%), Positives = 62/79 (78%)

Query: 212 FDSSEARRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKL 271
           F+  +  +RENQ+EI  L+FML QKE ELSRLKEQIEKEKL+LSVLQ +A  EI KA+ L
Sbjct: 239 FEMIQTMKRENQVEITRLRFMLRQKEQELSRLKEQIEKEKLSLSVLQRQAENEILKAQML 298

Query: 272 ISDKDEELIAAEESLSGLE 290
           +S KD EL  AEESLSGL+
Sbjct: 299 VSVKDVELQEAEESLSGLQ 317

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	381
TAIR|locus:2142669	598	AT5G03420 "AT5G03420" [Arabido	0.517	0.329	0.593	3.9e-77
TAIR|locus:2167067	273	AT5G39790 "AT5G39790" [Arabido	0.396	0.553	0.295	1e-08
UNIPROTKB|P80387	122	PRKAB1 "5'-AMP-activated prote	0.270	0.844	0.272	0.00029

TAIR|locus:2142669 AT5G03420 "AT5G03420" [Arabidopsis thaliana (taxid:3702)]

 Score = 565 (203.9 bits), Expect = 3.9e-77, Sum P(3) = 3.9e-77
 Identities = 121/204 (59%), Positives = 140/204 (68%)

Query:   178 LNGSALTSKQIASFATVNHPLSEDHLGTGVEGADFDSS-EARRRENQLEIDHLKFMLHQK 236
             LNGSAL  K+I     VN          G  G D D   E R+RENQ+EID L+FML QK
Sbjct:   398 LNGSALALKEIIHATEVNSSDRNSDQRDGSVGLDTDPHHETRKRENQVEIDRLRFMLDQK 457

Query:   237 EMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVEIQY 296
             E+ELSRLKEQIEKEKL+LSVLQ +A TEI KA+ LIS+K+ EL  AEESLSGL+ V I+Y
Sbjct:   458 ELELSRLKEQIEKEKLSLSVLQRQAETEIQKAQMLISEKEVELQEAEESLSGLQEVVIEY 517

Query:   297 SGDGEIVEVAGSFNGWHHRIKMDXXXXXXXXXXXXXXXXXLWSTVLWLYPGTYEIKFIVD 356
              GDG  VEV GSFNGW HR+ M+                  WST+LWLYPGTYEIKFIVD
Sbjct:   518 CGDGNAVEVTGSFNGWQHRVGMELQASKSIGKQK------CWSTLLWLYPGTYEIKFIVD 571

Query:   357 GQWKVDPQRESVTKGGICNNILRV 380
             GQW  DPQ++SVT+G I NNIL+V
Sbjct:   572 GQWITDPQKDSVTRGHISNNILKV 595

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2167067 AT5G39790 "AT5G39790" [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 1.0e-08, P = 1.0e-08
 Identities = 50/169 (29%), Positives = 84/169 (49%)

Query:   218 RRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQ-TKAVTEINKAEKLISDKD 276
             +R+E+  EI ++K  L   E+E+  L +  E E   L + Q ++ ++       L+S  D
Sbjct:   116 KRQEH--EITNIKTELALMELEVQALVKLAE-EIANLGIPQGSRKISGKYIQSHLLSRLD 172

Query:   277 EELIAAEESLSGLEV-----VEIQYSGDGEIVEVAGSFNGWHHRIKMDXXXXXXXXXXXX 331
                   +E + G+E      V + + G  E V+V GSF+GW  R  +             
Sbjct:   173 AVQKKMKEQIKGVEAAQSKEVHVFWIGMAESVQVMGSFDGWSQREDLSPEYSALFTK--- 229

Query:   332 XXXXXLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKGGICNNILRV 380
                   +ST L+L PG YE+KF+VDG+W++ P+  +  +G + NN+L V
Sbjct:   230 ------FSTTLFLRPGRYEMKFLVDGEWQISPEFPTSGEGLMENNVLVV 272

GO:0009507 "chloroplast" evidence=IDA

GO:0030247 "polysaccharide binding" evidence=IDA

UNIPROTKB|P80387 PRKAB1 "5'-AMP-activated protein kinase subunit beta-1" [Sus scrofa (taxid:9823)]

 Score = 96 (38.9 bits), Expect = 0.00029, P = 0.00029
 Identities = 34/125 (27%), Positives = 57/125 (45%)

Query:   264 EINKAEKLISDKDEELIAAEESLSGLEVVEIQ-------YSGDGEIVEVAGSFNGWHHRI 316
             ++  +E++ + + EE +A +  L   +    Q       ++G G+ V ++GSFN W    
Sbjct:    10 DLYHSEEIKAPEKEEFLAWQHDLEVNDKASAQARPTVFRWTGGGKEVYLSGSFNNWS--- 66

Query:   317 KMDXXXXXXXXXXXXXXXXXLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKG-GICN 375
             K+                   +  +L L  G ++ KF+VDGQW  DP    VT   G  N
Sbjct:    67 KLPLTRSHNN-----------FVAILDLPEGEHQYKFLVDGQWTHDPSEPVVTSQLGTVN 115

Query:   376 NILRV 380
             NI++V
Sbjct:   116 NIIQV 120


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.133   0.385    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      381       326   0.00087  116 3  11 22  0.43    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  611 (65 KB)
  Total size of DFA:  224 KB (2123 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  33.34u 0.28s 33.62t   Elapsed:  00:00:02
  Total cpu time:  33.34u 0.28s 33.62t   Elapsed:  00:00:02
  Start:  Tue May 21 01:53:02 2013   End:  Tue May 21 01:53:04 2013

GO:0005634 "nucleus" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00280219 hypothetical protein (626 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	381
cd02859	80	cd02859, E_set_AMPKbeta_like_N, N-terminal Early s	2e-23
cd07184	86	cd07184, E_set_Isoamylase_like_N, N-terminal Early	1e-04
cd02688	82	cd02688, E_set, Early set domain associated with t	7e-04

>gnl|CDD|199889 cd02859, E_set_AMPKbeta_like_N, N-terminal Early set domain, a glycogen binding domain, associated with the catalytic domain of AMP-activated protein kinase beta subunit

 Score = 92.7 bits (231), Expect = 2e-23
 Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 14/91 (15%)

Query: 292 VEIQYSG-DGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYE 350
           V  ++ G  G+ V V GSF+ W   I ++                  +S  + L PG YE
Sbjct: 2   VTFRWPGPGGKEVYVTGSFDNWQQPIPLEKSGDGE------------FSATVELPPGRYE 49

Query: 351 IKFIVDGQWKVDPQRESVT-KGGICNNILRV 380
            KFIVDG+W  DP   +VT + G  NN+L V
Sbjct: 50  YKFIVDGEWVHDPDLPTVTDEFGNLNNVLEV 80

E or "early" set domains are associated with the catalytic domain of AMP-activated protein kinase beta subunit glycogen binding domain at the N-terminal end. AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as an alpha-beta-gamma heterotrimer. This N-terminal domain is the glycogen binding domain of the beta subunit. This domain is also a member of the CBM48 (Carbohydrate Binding Module 48) family whose members include pullulanase, maltooligosyl trehalose synthase, starch branching enzyme, glycogen branching enzyme, glycogen debranching enzyme, and isoamylase. Length = 80

>gnl|CDD|199892 cd07184, E_set_Isoamylase_like_N, N-terminal Early set domain associated with the catalytic domain of isoamylase-like (also called glycogen 6-glucanohydrolase) proteins

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 13/64 (20%)

Query: 303 VEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIVDGQ-WK 360
           V + G FN W      DP        P++  K+  +S  L L  G  Y+ ++++DG+ W 
Sbjct: 16  VSLVGDFNDW------DPQA-----TPMKKLKNGTFSATLDLPAGREYQFRYLIDGERWV 64

Query: 361 VDPQ 364
            DP+
Sbjct: 65  NDPE 68

E or "early" set domains are associated with the catalytic domain of isoamylase-like proteins at the N-terminal end. Isoamylase is one of the starch-debranching enzymes that catalyze the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminal domain of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase. This domain is also a member of the CBM48 (Carbohydrate Binding Module 48) family whose members include pullulanase, maltooligosyl trehalose synthase, starch branching enzyme, glycogen branching enzyme, glycogen debranching enzyme, and the beta subunit of AMP-activated protein kinase. Length = 86

>gnl|CDD|199878 cd02688, E_set, Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus

 Score = 37.9 bits (88), Expect = 7e-04
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 10/68 (14%)

Query: 296 YSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV 355
           ++   + V + GSFNGW     +          P+      +WS  + L  GTYE K+++
Sbjct: 7   FAPGAKSVYLIGSFNGWWQAQAL----------PMTKNGGGVWSATIPLPLGTYEYKYVI 56

Query: 356 DGQWKVDP 363
           DG   V P
Sbjct: 57  DGGKNVLP 64

The E or "early" set domains of sugar utilizing enzymes are associated with different types of catalytic domains at either the N-terminal or C-terminal end. These domains may be related to the immunoglobulin and/or fibronectin type III superfamilies. Members of this family include alpha amylase, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase. A subset of these members were recently identified as members of the CBM48 (Carbohydrate Binding Module 48) family. Members of the CBM48 family include pullulanase, maltooligosyl trehalose synthase, starch branching enzyme, glycogen branching enzyme, glycogen debranching enzyme, isoamylase, and the beta subunit of AMP-activated protein kinase. Length = 82

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	381
cd02859	79	AMPKbeta_GBD_like AMP-activated protein kinase (AM	99.9
cd02861	82	E_set_proteins_like E or "early" set-like proteins	99.77
KOG1616	289	consensus Protein involved in Snf1 protein kinase	99.56
cd02858	85	Esterase_N_term Esterase N-terminal domain. Estera	99.27
cd02688	83	E_set E or "early" set of sugar utilizing enzymes	98.9
cd02854	99	Glycogen_branching_enzyme_like_N_term Glycogen bra	98.49
PF02922	85	CBM_48: Carbohydrate-binding module 48 (Isoamylase	98.43
cd02860	100	Pullulanase_N_term Pullulanase domain N-terminus.	97.99
cd05808	95	CBM20_alpha_amylase Alpha-amylase, C-terminal CBM2	97.78
cd02855	106	Glycogen_branching_enzyme_N_term Glycogen branchin	97.73
PF00686	96	CBM_20: Starch binding domain; InterPro: IPR002044	97.56
COG0296	628	GlgB 1,4-alpha-glucan branching enzyme [Carbohydra	97.54
cd02856	103	Glycogen_debranching_enzyme_N_term Glycogen_debran	97.43
PRK12313	633	glycogen branching enzyme; Provisional	97.43
PRK12568	730	glycogen branching enzyme; Provisional	97.4
cd05814	120	CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-	97.38
cd05818	92	CBM20_water_dikinase Phosphoglucan water dikinase	97.29
cd05811	106	CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-g	97.22
PRK14706	639	glycogen branching enzyme; Provisional	97.19
cd05809	99	CBM20_beta_amylase Beta-amylase, C-terminal CBM20	97.17
cd05820	103	CBM20_novamyl Novamyl (also known as acarviose tra	97.16
cd02853	85	MTHase_N_term Maltooligosyl trehalose synthase (MT	97.12
PRK14705	1224	glycogen branching enzyme; Provisional	97.11
cd02852	119	Isoamylase_N_term Isoamylase N-terminus domain. Is	97.09
TIGR02402	542	trehalose_TreZ malto-oligosyltrehalose trehalohydr	96.95
PLN02447	758	1,4-alpha-glucan-branching enzyme	96.91
PRK05402	726	glycogen branching enzyme; Provisional	96.9
cd05816	99	CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DP	96.86
cd05467	96	CBM20 The family 20 carbohydrate-binding module (C	96.79
cd05817	100	CBM20_DSP Dual-specificity phosphatase (DSP), N-te	96.75
cd05807	101	CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrat	96.72
cd05813	95	CBM20_genethonin_1 Genethonin-1, C-terminal CBM20	96.68
TIGR01515	613	branching_enzym alpha-1,4-glucan:alpha-1,4-glucan	96.52
PRK05402	726	glycogen branching enzyme; Provisional	96.28
cd05810	97	CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrol	96.04
PLN02316	1036	synthase/transferase	95.66
cd05815	101	CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DP	95.43
TIGR02104	605	pulA_typeI pullulanase, type I. Pullulan is an unu	94.89
PF03423	87	CBM_25: Carbohydrate binding domain (family 25); I	94.0
cd05806	112	CBM20_laforin Laforin protein tyrosine phosphatase	93.85
PLN02316	1036	synthase/transferase	92.84
TIGR02100	688	glgX_debranch glycogen debranching enzyme GlgX. Th	92.76
PLN02950	909	4-alpha-glucanotransferase	92.46
PF11806	122	DUF3327: Domain of unknown function (DUF3327); Int	92.42
PRK10439	411	enterobactin/ferric enterobactin esterase; Provisi	92.11
PLN02960	897	alpha-amylase	91.97
TIGR02102	1111	pullulan_Gpos pullulanase, extracellular, Gram-pos	90.56
PLN02950	909	4-alpha-glucanotransferase	90.39
TIGR02103	898	pullul_strch alpha-1,6-glucosidases, pullulanase-t	89.99
PRK03705	658	glycogen debranching enzyme; Provisional	89.9
cd02857	116	CD_pullulan_degrading_enzymes_N_term CD and pullul	85.8
PRK14510	1221	putative bifunctional 4-alpha-glucanotransferase/g	81.95

>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD)

Probab=99.90  E-value=5.3e-24  Score=168.54  Aligned_cols=78  Identities=35%  Similarity=0.699  Sum_probs=71.6

Q ss_pred             cEEEEEEeecCCceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEcCeeecCCCCCee
Q 016838          289 LEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESV  368 (381)
Q Consensus       289 Lk~VTF~W~g~AkeVeVaGSFNnW~~~IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG~YEYKFIVDGeW~~DP~~PtV  368 (381)
                      +.+|+|+|.++|++|+|+|+|++|++.++|.+.            ..+ |++++.||||.|+|||+|||+|++||+.|++
T Consensus         1 ~~~v~f~~~~~a~~V~v~G~F~~W~~~~pm~~~------------~~~-~~~~~~L~~g~y~YkF~Vdg~w~~d~~~~~~   67 (79)
T cd02859           1 MVPTTFVWPGGGKEVYVTGSFDNWKKKIPLEKS------------GKG-FSATLRLPPGKYQYKFIVDGEWRHSPDLPTE   67 (79)
T ss_pred             CeEEEEEEcCCCcEEEEEEEcCCCCccccceEC------------CCC-cEEEEEcCCCCEEEEEEECCEEEeCCCCCcc
Confidence            368999999999999999999999988899985            334 9999999999999999999999999999999


Q ss_pred             cc-CCccceEEE
Q 016838          369 TK-GGICNNILR  379 (381)
Q Consensus       369 tD-~GnvNNVL~  379 (381)
                      .+ .|+.||+|.
T Consensus        68 ~d~~G~~NN~i~   79 (79)
T cd02859          68 TDDEGNVNNVID   79 (79)
T ss_pred             CCCCCcEeeeEC
Confidence            87 799999984

AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.

>cd02861 E_set_proteins_like E or "early" set-like proteins

Probab=99.77  E-value=1.5e-18  Score=137.04  Aligned_cols=77  Identities=39%  Similarity=0.689  Sum_probs=67.9

Q ss_pred             EEEEEEeecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEcCeee-cCCCCCe
Q 016838          290 EVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWK-VDPQRES  367 (381)
Q Consensus       290 k~VTF~W~g~-AkeVeVaGSFNnW~~~IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG~YEYKFIVDGeW~-~DP~~Pt  367 (381)
                      .+|+|+|.++ ++.|+|+|+|++|+ .++|.++            .+|.|++++.|+||.|+|||+|||.|. +||.++.
T Consensus         2 ~~vtf~~~ap~a~~V~v~G~fn~W~-~~~m~~~------------~~G~w~~~~~l~~G~y~Ykf~vdg~~~~~DP~~~~   68 (82)
T cd02861           2 VPVVFAYRGPEADSVYLAGSFNNWN-AIPMERE------------GDGLWVVTVELRPGRYEYKFVVDGEWVIVDPNAAA   68 (82)
T ss_pred             ccEEEEEECCCCCEEEEEeECCCCC-cccCEEC------------CCCcEEEEEeCCCCcEEEEEEECCEEeeCCCCCCc
Confidence            4799999997 69999999999998 4788874            569999999999999999999999999 9999997


Q ss_pred             ec-c-CCccceEEE
Q 016838          368 VT-K-GGICNNILR  379 (381)
Q Consensus       368 Vt-D-~GnvNNVL~  379 (381)
                      .. + .|+.|++|.
T Consensus        69 ~~~~~~g~~n~v~~   82 (82)
T cd02861          69 YVDDGFGGKNAVFV   82 (82)
T ss_pred             eecCCCCccceEcC
Confidence            66 4 488898873

These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>KOG1616 consensus Protein involved in Snf1 protein kinase complex assembly [Carbohydrate transport and metabolism]

Probab=99.56  E-value=5.8e-15  Score=142.69  Aligned_cols=83  Identities=39%  Similarity=0.567  Sum_probs=75.2

Q ss_pred             cEEEEEEeecCCceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEcCeeecCCCCCee
Q 016838          289 LEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESV  368 (381)
Q Consensus       289 Lk~VTF~W~g~AkeVeVaGSFNnW~~~IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG~YEYKFIVDGeW~~DP~~PtV  368 (381)
                      ..+|+|+|..+++.|+|.|+|++|...++|.+.-          +..|.|++++.|++|.|+|||+|||+|.+|++.|++
T Consensus        79 ~~pvvi~W~~gg~~v~v~gS~~nWk~~~~l~~~~----------~~~~~f~~~~dL~~g~~~~kf~vdge~~~s~~~pta  148 (289)
T KOG1616|consen   79 GRPTVIRWSQGGKEVYVDGSFGNWKTKIPLVRSG----------KNVGGFSTILDLPPGEHEYKFIVDGEWRHDPDLPTA  148 (289)
T ss_pred             CCceEEEecCCCceEEEecccccccccccceecC----------CCcccceeeEecCCceEEEEEecCCceecCCCCccc
Confidence            3799999999999999999999999989988741          244559999999999999999999999999999999


Q ss_pred             cc-CCccceEEEeC
Q 016838          369 TK-GGICNNILRVI  381 (381)
Q Consensus       369 tD-~GnvNNVL~V~  381 (381)
                      .+ .|+.||+|.|.
T Consensus       149 ~d~~Gn~~N~i~v~  162 (289)
T KOG1616|consen  149 EDSLGNLNNILEVQ  162 (289)
T ss_pred             ccccCCcccceEec
Confidence            98 79999999984

>cd02858 Esterase_N_term Esterase N-terminal domain

Probab=99.27  E-value=2.5e-11  Score=97.20  Aligned_cols=76  Identities=25%  Similarity=0.393  Sum_probs=63.9

Q ss_pred             EEEEEEeecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEE-EeCCeeEEEEEEEcCeeecCCCCCe
Q 016838          290 EVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVL-WLYPGTYEIKFIVDGQWKVDPQRES  367 (381)
Q Consensus       290 k~VTF~W~g~-AkeVeVaGSFNnW~~~IpM~Kd~~~~~~a~~~skesGvFsttL-~LpPG~YEYKFIVDGeW~~DP~~Pt  367 (381)
                      ..|+|+..++ |++|.|.|+|++|.. .+|+++            ++|.|++++ .|.+|.|.|+|+|||.|+.||.++.
T Consensus         6 ~~v~F~vwAP~A~~V~L~~~~~~~~~-~~m~~~------------~~G~W~~~v~~l~~g~Y~Y~~~vdg~~~~DP~s~~   72 (85)
T cd02858           6 RTVTFRLFAPKANEVQVRGSWGGAGS-HPMTKD------------EAGVWSVTTGPLAPGIYTYSFLVDGVRVIDPSNPT   72 (85)
T ss_pred             CcEEEEEECCCCCEEEEEeecCCCcc-EeCeEC------------CCeEEEEEECCCCCcEEEEEEEECCeEecCCCCCc
Confidence            5789988776 999999999998864 789875            689999998 4889999999999999999999998


Q ss_pred             ecc-CCccceEE
Q 016838          368 VTK-GGICNNIL  378 (381)
Q Consensus       368 VtD-~GnvNNVL  378 (381)
                      ... .+..-|.+
T Consensus        73 ~~~~~~~~~~~~   84 (85)
T cd02858          73 TKPGRQVDTSGV   84 (85)
T ss_pred             eeecccccceee
Confidence            884 45554443

Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies

Probab=98.90  E-value=6.5e-09  Score=78.28  Aligned_cols=70  Identities=30%  Similarity=0.478  Sum_probs=60.2

Q ss_pred             EEEEEEeecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCC-eeEEEEEEEcCeeecCCCCCe
Q 016838          290 EVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYP-GTYEIKFIVDGQWKVDPQRES  367 (381)
Q Consensus       290 k~VTF~W~g~-AkeVeVaGSFNnW~~~IpM~Kd~~~~~~a~~~skesGvFsttL~LpP-G~YEYKFIVDGeW~~DP~~Pt  367 (381)
                      ..|+|++.++ ++.|.|.+.|++|...++|.+.            ..|.|.+.+.+.. |.|.|+|+|||.|.+++.++.
T Consensus         4 ~~v~f~v~ap~a~~v~l~~~~~~~~~~~~~~~~------------~~g~w~~~v~~~~~~~~~Y~~~v~~~~~~~~~~~~   71 (83)
T cd02688           4 KGVTFTVRGPKAQRVSLAGSFNGDTQLIPMTKV------------EDGYWEVELPLPSPGKYQYKYVLDGGKGPDEGEPK   71 (83)
T ss_pred             ccEEEEEECCCCCEEEEEEEECCCCCcccCEEC------------CCceEEEEEcCCCCCCeEEEEEEeCCCCCCCCChh
Confidence            4789988886 8999999999997667889874            5699999999887 999999999999999998866


Q ss_pred             eccC
Q 016838          368 VTKG  371 (381)
Q Consensus       368 VtD~  371 (381)
                      ..+.
T Consensus        72 ~~~~   75 (83)
T cd02688          72 ADEG   75 (83)
T ss_pred             hhcC
Confidence            6653

These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain

Probab=98.49  E-value=4.2e-07  Score=75.62  Aligned_cols=68  Identities=19%  Similarity=0.379  Sum_probs=52.1

Q ss_pred             EEEEEEeecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEEe--------CCe-eEEEEEEE-cC
Q 016838          290 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLWL--------YPG-TYEIKFIV-DG  357 (381)
Q Consensus       290 k~VTF~W~g~-AkeVeVaGSFNnW~~~-IpM~Kd~~~~~~a~~~skesGvFsttL~L--------pPG-~YEYKFIV-DG  357 (381)
                      ..++|+..+| |+.|+|+|+||+|+.. .+|.+.            .+|+|++++..        +.| .|.|.+.. ||
T Consensus         5 ~g~~FrvwAP~A~~V~l~GdFn~W~~~~~~m~k~------------~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G   72 (99)
T cd02854           5 GGVTYREWAPNAEEVYLIGDFNNWDRNAHPLKKD------------EFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSG   72 (99)
T ss_pred             CeEEEEEECCCCCEEEEEccCCCCCCcCcccEEC------------CCCEEEEEECCcccccccCCCCCEEEEEEEeCCC
Confidence            4688977665 9999999999999864 679874            68999999864        455 56666666 78


Q ss_pred             ee--ecCCCCCeec
Q 016838          358 QW--KVDPQRESVT  369 (381)
Q Consensus       358 eW--~~DP~~PtVt  369 (381)
                      +|  +.||-...+.
T Consensus        73 ~~~~~~DPyA~~~~   86 (99)
T cd02854          73 EWIDRIPAWIKYVT   86 (99)
T ss_pred             CEEEEcCcceeEEE
Confidence            76  5688777665

Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi

>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3

Probab=98.43  E-value=2.3e-07  Score=72.18  Aligned_cols=59  Identities=27%  Similarity=0.435  Sum_probs=46.7

Q ss_pred             EEEEEEeecC-CceEEEEeeeCC-Cccc-cccCCCCCCCccccccccCCCcEEEEEE--eCCeeEEEEEEEcCee
Q 016838          290 EVVEIQYSGD-GEIVEVAGSFNG-WHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW--LYPGTYEIKFIVDGQW  359 (381)
Q Consensus       290 k~VTF~W~g~-AkeVeVaGSFNn-W~~~-IpM~Kd~~~~~~a~~~skesGvFsttL~--LpPG~YEYKFIVDGeW  359 (381)
                      ..++|+..++ |++|.|.+.|++ |... ++|.+.           ...|+|++++.  +++|.+.|+|.|||..
T Consensus        11 ~~~~F~vwaP~A~~V~l~~~~~~~~~~~~~~m~~~-----------~~~G~w~~~~~~~~~~g~~~Y~y~i~~~~   74 (85)
T PF02922_consen   11 GGVTFRVWAPNAKSVELVLYFNGSWPAEEYPMTRK-----------DDDGVWEVTVPGDLPPGGYYYKYRIDGDD   74 (85)
T ss_dssp             TEEEEEEE-TTESEEEEEEETTTSSEEEEEEEEEE-----------CTTTEEEEEEEGCGTTTT-EEEEEEEETT
T ss_pred             CEEEEEEECCCCCEEEEEEEeeecCCCceEEeeec-----------CCCCEEEEEEcCCcCCCCEEEEEEEEeCC
Confidence            5789977775 999999999999 8654 688831           37899999998  8889888899988653

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....

>cd02860 Pullulanase_N_term Pullulanase domain N-terminus

Probab=97.99  E-value=2.7e-05  Score=63.31  Aligned_cols=68  Identities=18%  Similarity=0.239  Sum_probs=52.9

Q ss_pred             EEEEEeecC-CceEEEEeeeCCCc-----cccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEcCe-----
Q 016838          291 VVEIQYSGD-GEIVEVAGSFNGWH-----HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQ-----  358 (381)
Q Consensus       291 ~VTF~W~g~-AkeVeVaGSFNnW~-----~~IpM~Kd~~~~~~a~~~skesGvFsttL~-LpPG~YEYKFIVDGe-----  358 (381)
                      .++|+..++ |++|.|.. |++|.     ..++|.+.            ..|+|++.+. +.+|.+ |+|.|+|.     
T Consensus         9 ~~~F~vwAP~A~~V~L~l-~~~~~~~~~~~~~~m~~~------------~~gvw~~~v~~~~~g~~-Y~y~i~~~~~~~~   74 (100)
T cd02860           9 KTTFRLWAPTAQSVKLLL-YDKDDQDKVLETVQMKRG------------ENGVWSVTLDGDLEGYY-YLYEVKVYKGETN   74 (100)
T ss_pred             CEEEEEECCCCcEEEEEE-EcCCCCCCcceeEeeecC------------CCCEEEEEeCCccCCcE-EEEEEEEeceEEE
Confidence            578977666 99999988 88886     34678763            7899999986 566665 99999876     


Q ss_pred             eecCCCCCeeccCC
Q 016838          359 WKVDPQRESVTKGG  372 (381)
Q Consensus       359 W~~DP~~PtVtD~G  372 (381)
                      ...||-...+..+|
T Consensus        75 ~~~DPyA~~~~~~~   88 (100)
T cd02860          75 EVVDPYAKALSANG   88 (100)
T ss_pred             EEcCcccEeEeeCC
Confidence            78899888777543

Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.78  E-value=0.00013  Score=58.39  Aligned_cols=63  Identities=27%  Similarity=0.556  Sum_probs=47.2

Q ss_pred             EEEEEeec---CCceEEEEee---eCCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---cC-
Q 016838          291 VVEIQYSG---DGEIVEVAGS---FNGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG-  357 (381)
Q Consensus       291 ~VTF~W~g---~AkeVeVaGS---FNnW~~~--IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG-~YEYKFIV---DG-  357 (381)
                      +|+|....   .++.|+|+|+   +.+|++.  ++|...            ..+.|++++.||+| .++|||++   +| 
T Consensus         2 ~v~F~v~~~t~~ge~l~v~G~~~~lG~W~~~~a~~l~~~------------~~~~W~~~v~l~~~~~~eYKy~~~~~~~~   69 (95)
T cd05808           2 AVTFNVTATTVWGQNVYVVGNVPELGNWSPANAVALSAA------------TYPVWSGTVDLPAGTAIEYKYIKKDGSGT   69 (95)
T ss_pred             eEEEEEEEECCCCCEEEEEeCcHHhCCCChhhCccCCCC------------CCCCEEEEEEeCCCCeEEEEEEEECCCCc
Confidence            46666543   4899999995   7899864  577652            56889999999987 79999997   24 


Q ss_pred             -eeecCCCC
Q 016838          358 -QWKVDPQR  365 (381)
Q Consensus       358 -eW~~DP~~  365 (381)
                       .|...++.
T Consensus        70 ~~WE~~~nr   78 (95)
T cd05808          70 VTWESGPNR   78 (95)
T ss_pred             EEEecCCCE
Confidence             47666643

This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo

>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain

Probab=97.73  E-value=0.00021  Score=57.33  Aligned_cols=77  Identities=26%  Similarity=0.357  Sum_probs=50.9

Q ss_pred             EEEEEeecC-CceEEEEeeeCCCcc-ccccCCCCCCCccccccccCCCcEEEEEE-eCCee-EEEEEEEc-Ce--eecCC
Q 016838          291 VVEIQYSGD-GEIVEVAGSFNGWHH-RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGT-YEIKFIVD-GQ--WKVDP  363 (381)
Q Consensus       291 ~VTF~W~g~-AkeVeVaGSFNnW~~-~IpM~Kd~~~~~~a~~~skesGvFsttL~-LpPG~-YEYKFIVD-Ge--W~~DP  363 (381)
                      .++|+...+ |+.|.|.|+|++|.. ..+|.+.           ...|.|.+.+. +++|. |.|++..+ |.  ...||
T Consensus        22 ~~~frv~aP~A~~V~l~~~~~~~~~~~~~m~~~-----------~~~G~w~~~v~~~~~~~~Y~~~v~~~~g~~~~~~DP   90 (106)
T cd02855          22 GVRFAVWAPNARRVSVVGDFNGWDGRRHPMRRR-----------GDSGVWELFIPGLGEGELYKYEILGADGHLPLKADP   90 (106)
T ss_pred             CEEEEEECCCCCEEEEEEECCCCCCcceecEEC-----------CCCCEEEEEECCCCCCCEEEEEEECCCCCEEEeeCC
Confidence            478866665 999999999999964 3578764           24899999885 66664 44444433 33  34577


Q ss_pred             CCCeeccCCccceEE
Q 016838          364 QRESVTKGGICNNIL  378 (381)
Q Consensus       364 ~~PtVtD~GnvNNVL  378 (381)
                      -...+......++|+
T Consensus        91 Ya~~~~~~~~~~~~~  105 (106)
T cd02855          91 YAFYSELRPGTASIV  105 (106)
T ss_pred             CceeeEeCCCCeEEe
Confidence            666555444455553

Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina

>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3

Probab=97.56  E-value=0.00024  Score=57.57  Aligned_cols=58  Identities=22%  Similarity=0.427  Sum_probs=45.3

Q ss_pred             EEEEEEeec---CCceEEEEeeeC---CCcc--ccccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE
Q 016838          290 EVVEIQYSG---DGEIVEVAGSFN---GWHH--RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV  355 (381)
Q Consensus       290 k~VTF~W~g---~AkeVeVaGSFN---nW~~--~IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG-~YEYKFIV  355 (381)
                      ..|+|....   .++.|+|+||..   +|++  .++|....        ++.....|++++.||.| .++|||+|
T Consensus         2 v~V~F~v~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~--------~~~~~~~W~~~v~lp~~~~~eYKy~i   68 (96)
T PF00686_consen    2 VSVTFRVNYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNE--------GTENYPIWSATVDLPAGTPFEYKYVI   68 (96)
T ss_dssp             EEEEEEESE---TTEEEEEEESSGGGTTTSGGGSBESEBES--------SSSTTTSEEEEEEEETTSEEEEEEEE
T ss_pred             EEEEEEEEeECCCCCEEEEEECcHHhCCCChHhcccccccc--------CCCCCCeEEEEEECcCCCEEEEEEEE
Confidence            467887744   489999999996   8997  46776531        11256899999999988 69999999

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....

>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]

Probab=97.54  E-value=0.00014  Score=78.03  Aligned_cols=68  Identities=24%  Similarity=0.408  Sum_probs=52.7

Q ss_pred             CcEEEEEEeecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEcCe-----ee
Q 016838          288 GLEVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQ-----WK  360 (381)
Q Consensus       288 gLk~VTF~W~g~-AkeVeVaGSFNnW~~~IpM~Kd~~~~~~a~~~skesGvFsttL~-LpPG~YEYKFIVDGe-----W~  360 (381)
                      |...|+|+..+| ++.|.|.|+||+|+. .+|...         ..++.|.|.+++. +++| +.|||.|++.     ++
T Consensus        34 g~~~~~F~vWAP~a~~V~vvgdfn~w~~-~~~~~~---------~~~~~G~we~~vp~~~~G-~~Yky~l~~~~g~~~~~  102 (628)
T COG0296          34 GVSGVRFRVWAPNARRVSLVGDFNDWDG-RRMPMR---------DRKESGIWELFVPGAPPG-TRYKYELIDPSGQLRLK  102 (628)
T ss_pred             CCCceEEEEECCCCCeEEEEeecCCccc-eecccc---------cCCCCceEEEeccCCCCC-CeEEEEEeCCCCceeec
Confidence            566899976665 999999999999987 344332         1136799999998 9999 9999999764     37


Q ss_pred             cCCCCC
Q 016838          361 VDPQRE  366 (381)
Q Consensus       361 ~DP~~P  366 (381)
                      .||-.-
T Consensus       103 ~DP~a~  108 (628)
T COG0296         103 ADPYAR  108 (628)
T ss_pred             cCchhh
Confidence            777654

>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain

Probab=97.43  E-value=0.00054  Score=56.27  Aligned_cols=65  Identities=17%  Similarity=0.298  Sum_probs=48.3

Q ss_pred             EEEEEeecC-CceEEEEeeeCCCc--cccccCCCCCCCccccccccCCCcEEEEE-EeCCeeEEEEEEEcC---------
Q 016838          291 VVEIQYSGD-GEIVEVAGSFNGWH--HRIKMDPLPSSSIIEPIRSRKSRLWSTVL-WLYPGTYEIKFIVDG---------  357 (381)
Q Consensus       291 ~VTF~W~g~-AkeVeVaGSFNnW~--~~IpM~Kd~~~~~~a~~~skesGvFsttL-~LpPG~YEYKFIVDG---------  357 (381)
                      .++|+..++ |+.|.|.. |++|.  ..++|.++            ..|+|.+.+ .+.+|. .|+|.|||         
T Consensus        10 g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~------------~~GvW~~~v~~~~~g~-~Y~y~i~g~~~p~~~~~   75 (103)
T cd02856          10 GCNFAVHSENATRIELCL-FDEDGSETRLPLTEE------------YGGVWHGFLPGIKAGQ-RYGFRVHGPYDPERGLR   75 (103)
T ss_pred             CeEEEEECCCCCEEEEEE-EeCCCCEEEEEcccc------------cCCEEEEEECCCCCCC-EEEEEECCccCcccCcc
Confidence            478877666 99999998 66664  34678764            689999998 466765 79999999         


Q ss_pred             ----eeecCCCCCeec
Q 016838          358 ----QWKVDPQRESVT  369 (381)
Q Consensus       358 ----eW~~DP~~PtVt  369 (381)
                          ....||-...+.
T Consensus        76 ~~~~~~~~DPYA~~~~   91 (103)
T cd02856          76 FNPAKLLLDPYARALD   91 (103)
T ss_pred             cCCCeEEecCCcceEc
Confidence                556666665554

Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>PRK12313 glycogen branching enzyme; Provisional

Probab=97.43  E-value=0.00045  Score=73.14  Aligned_cols=68  Identities=22%  Similarity=0.329  Sum_probs=49.9

Q ss_pred             EEEEEEeecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCe-eEEEEEEE-cCee--ecC
Q 016838          290 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-TYEIKFIV-DGQW--KVD  362 (381)
Q Consensus       290 k~VTF~W~g~-AkeVeVaGSFNnW~~~-IpM~Kd~~~~~~a~~~skesGvFsttL~-LpPG-~YEYKFIV-DGeW--~~D  362 (381)
                      ..|+|+..+| |++|+|+|+|++|... .+|.+.            ..|+|.+++. +.+| .|.|++.+ ||.|  ..|
T Consensus        38 ~gv~Frv~AP~A~~V~v~gdfn~w~~~~~~m~~~------------~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~D  105 (633)
T PRK12313         38 KGTYFRVWAPNAQAVSVVGDFNDWRGNAHPLVRR------------ESGVWEGFIPGAKEGQLYKYHISRQDGYQVEKID  105 (633)
T ss_pred             ccEEEEEECCCCCEEEEEEecCCCCccccccccc------------CCCEEEEEeCCCCCCCEEEEEEECCCCeEEecCC
Confidence            3789987776 9999999999999864 578763            6799999997 4555 56666644 5765  456


Q ss_pred             CCCCeec
Q 016838          363 PQRESVT  369 (381)
Q Consensus       363 P~~PtVt  369 (381)
                      |-...+.
T Consensus       106 Pya~~~~  112 (633)
T PRK12313        106 PFAFYFE  112 (633)
T ss_pred             CceEEEe
Confidence            6655443

>PRK12568 glycogen branching enzyme; Provisional

Probab=97.40  E-value=0.00056  Score=74.57  Aligned_cols=69  Identities=26%  Similarity=0.431  Sum_probs=52.8

Q ss_pred             CcEEEEEEeecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEE---cCeee-
Q 016838          288 GLEVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIV---DGQWK-  360 (381)
Q Consensus       288 gLk~VTF~W~g~-AkeVeVaGSFNnW~~~-IpM~Kd~~~~~~a~~~skesGvFsttL~-LpPG~YEYKFIV---DGeW~-  360 (381)
                      |..-|+|+..+| |++|.|+|+||+|... .+|.+.            ..|+|++.+. +.+| ..|||.|   ||.+. 
T Consensus       136 g~~Gv~FaVWAPnA~~VsVvGDFN~Wdg~~~pM~~~------------~~GVWelfipg~~~G-~~YKYeI~~~~G~~~~  202 (730)
T PRK12568        136 EVPGVRFAVWAPHAQRVAVVGDFNGWDVRRHPMRQR------------IGGFWELFLPRVEAG-ARYKYAITAADGRVLL  202 (730)
T ss_pred             CCCcEEEEEECCCCCEEEEEEecCCCCccceecccC------------CCCEEEEEECCCCCC-CEEEEEEEcCCCeEee
Confidence            445789977666 9999999999999864 578763            6899999984 7777 4677777   78764 


Q ss_pred             -cCCCCCeec
Q 016838          361 -VDPQRESVT  369 (381)
Q Consensus       361 -~DP~~PtVt  369 (381)
                       .||-...+.
T Consensus       203 k~DPYA~~~e  212 (730)
T PRK12568        203 KADPVARQTE  212 (730)
T ss_pred             cCCCcceEee
Confidence             688765544

>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.38  E-value=0.0013  Score=55.82  Aligned_cols=55  Identities=24%  Similarity=0.558  Sum_probs=43.2

Q ss_pred             EEEEEeec----CCceEEEEee---eCCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE
Q 016838          291 VVEIQYSG----DGEIVEVAGS---FNGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV  355 (381)
Q Consensus       291 ~VTF~W~g----~AkeVeVaGS---FNnW~~~--IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG-~YEYKFIV  355 (381)
                      .|+|....    .++.|+|+|+   +.+|++.  ++|....          ...+.|++++.||++ .++|||+|
T Consensus         2 ~v~F~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~l~~~~----------~~~~~W~~~v~lp~~~~veYkY~~   66 (120)
T cd05814           2 RVTFRVFASELAPGEVVAVVGSLPVLGNWQPEKAVPLEKED----------DDCNLWKASIELPRGVDFQYRYFV   66 (120)
T ss_pred             eEEEEEeeccCCCCCEEEEEeChHHhCCCCHHhCeeCccCC----------CcCCccEEEEEECCCCeEEEEEEE
Confidence            46666654    4899999999   8999853  5776530          145789999999988 89999999

Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.

>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.29  E-value=0.0021  Score=52.39  Aligned_cols=68  Identities=26%  Similarity=0.437  Sum_probs=50.0

Q ss_pred             EEEEEEeec---CCceEEEEeee---CCCccccccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---cC--
Q 016838          290 EVVEIQYSG---DGEIVEVAGSF---NGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG--  357 (381)
Q Consensus       290 k~VTF~W~g---~AkeVeVaGSF---NnW~~~IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG-~YEYKFIV---DG--  357 (381)
                      ..|+|....   .|+.++|+|+-   .+|++..+|..             ..+.|++.+.+|+| .+||||++   ||  
T Consensus         2 ~~v~F~~~~~~~~Gq~l~v~G~~~~LG~W~~~~~l~~-------------~~~~W~~~~~l~~~~~ieyKy~~~~~~~~v   68 (92)
T cd05818           2 VKLQVRLDHQVKFGEHVAILGSTKELGSWKKKVPMNW-------------TENGWVCDLELDGGELVEYKFVIVKRDGSV   68 (92)
T ss_pred             EEEEEEEEEEcCCCCEEEEEeChHHHCCCCCCCcccc-------------CCCCEEEEEEeCCCCcEEEEEEEEcCCCCE
Confidence            356676654   48999999987   59997777764             24569999999988 79999999   44  


Q ss_pred             eeecCCCCCeecc
Q 016838          358 QWKVDPQRESVTK  370 (381)
Q Consensus       358 eW~~DP~~PtVtD  370 (381)
                      .|...++.-....
T Consensus        69 ~WE~g~Nr~~~~~   81 (92)
T cd05818          69 IWEGGNNRVLELP   81 (92)
T ss_pred             EEEeCCCEEEEcc
Confidence            4877665443333

This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio

>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.22  E-value=0.0033  Score=51.70  Aligned_cols=74  Identities=28%  Similarity=0.556  Sum_probs=51.0

Q ss_pred             cEEEEEEeec---CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---c
Q 016838          289 LEVVEIQYSG---DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---D  356 (381)
Q Consensus       289 Lk~VTF~W~g---~AkeVeVaGSF---NnW~~~--IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG-~YEYKFIV---D  356 (381)
                      ...|+|....   .++.|+|+|+-   .+|++.  ++|...        ..+...+.|++++.||+| .++|||+|   |
T Consensus         6 ~v~V~F~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~--------~~t~~~~~W~~~v~lp~~~~veYKy~~~~~~   77 (106)
T cd05811           6 TVAVTFNERVTTSYGENIKIVGSIPQLGNWDTSSAVALSAS--------QYTSSNPLWSVTIPLPAGTSFEYKFIRKESD   77 (106)
T ss_pred             EEEEEEEEeeEcCCCCeEEEEeCcHHHCCCChhhCcccccc--------cCccCCCcEEEEEEeCCCCcEEEEEEEEcCC
Confidence            3578887654   48999999986   489863  567542        011245789999999988 59999997   2


Q ss_pred             C--eeecCCCCCeecc
Q 016838          357 G--QWKVDPQRESVTK  370 (381)
Q Consensus       357 G--eW~~DP~~PtVtD  370 (381)
                      |  .|...++.-....
T Consensus        78 ~~~~WE~~~nr~~~~~   93 (106)
T cd05811          78 GSVTWESDPNRSYTVP   93 (106)
T ss_pred             CcEEEecCCCeEEECC
Confidence            3  3877764443334

Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also

>PRK14706 glycogen branching enzyme; Provisional

Probab=97.19  E-value=0.0011  Score=71.07  Aligned_cols=68  Identities=31%  Similarity=0.436  Sum_probs=50.9

Q ss_pred             EEEEEEeecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEcC---ee--ec
Q 016838          290 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDG---QW--KV  361 (381)
Q Consensus       290 k~VTF~W~g~-AkeVeVaGSFNnW~~~-IpM~Kd~~~~~~a~~~skesGvFsttL~-LpPG~YEYKFIVDG---eW--~~  361 (381)
                      ..|+|+..++ |++|.|+|+||+|... .+|.+.            ..|+|.+.+. +.+| ..|||.|+|   .+  +.
T Consensus        38 ~Gv~FrvwAP~A~~V~Lvgdfn~w~~~~~pM~~~------------~~GvW~~~vpg~~~g-~~Yky~I~~~~g~~~~~~  104 (639)
T PRK14706         38 EGVRFAVWAPGAQHVSVVGDFNDWNGFDHPMQRL------------DFGFWGAFVPGARPG-QRYKFRVTGAAGQTVDKM  104 (639)
T ss_pred             ccEEEEEECCCCCEEEEEEecCCccccccccccc------------CCCEEEEEECCCCCC-CEEEEEEECCCCCEEecc
Confidence            3688977665 9999999999999864 588764            5699999986 4555 468888865   43  67


Q ss_pred             CCCCCeecc
Q 016838          362 DPQRESVTK  370 (381)
Q Consensus       362 DP~~PtVtD  370 (381)
                      ||-...+..
T Consensus       105 DPYa~~~~~  113 (639)
T PRK14706        105 DPYGSFFEV  113 (639)
T ss_pred             CcceEEEec
Confidence            877665443

>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.17  E-value=0.0027  Score=52.24  Aligned_cols=72  Identities=22%  Similarity=0.344  Sum_probs=49.7

Q ss_pred             EEEEEEeec----CCceEEEEe---eeCCCcccc-ccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---cC
Q 016838          290 EVVEIQYSG----DGEIVEVAG---SFNGWHHRI-KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG  357 (381)
Q Consensus       290 k~VTF~W~g----~AkeVeVaG---SFNnW~~~I-pM~Kd~~~~~~a~~~skesGvFsttL~LpPG-~YEYKFIV---DG  357 (381)
                      .+|+|....    .++.|+|+|   .+.+|+... +|...         .....+.|++++.||+| .++|||++   ||
T Consensus         3 v~v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~~---------~~~~~~~W~~~~~lp~~~~veyKyv~~~~~~   73 (99)
T cd05809           3 VPQTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQLY---------YNSHSNDWRGTVHLPAGRNIEFKAIKKSKDG   73 (99)
T ss_pred             eEEEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhccc---------cCCCCCCEEEEEEecCCCcEEEEEEEEcCCC
Confidence            678888743    389999999   567998642 23321         00245789999999998 69999999   44


Q ss_pred             ---eeecCCCCCeecc
Q 016838          358 ---QWKVDPQRESVTK  370 (381)
Q Consensus       358 ---eW~~DP~~PtVtD  370 (381)
                         .|...++.-....
T Consensus        74 ~~~~WE~g~nr~~~~p   89 (99)
T cd05809          74 TNKSWQGGQQSWYPVP   89 (99)
T ss_pred             CeeEEecCCCeeEECC
Confidence               2766665443333

Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1

>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.16  E-value=0.0039  Score=51.86  Aligned_cols=69  Identities=23%  Similarity=0.352  Sum_probs=51.3

Q ss_pred             EEEEEEeec-----CCceEEEEeee---CCCcccc-----ccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE
Q 016838          290 EVVEIQYSG-----DGEIVEVAGSF---NGWHHRI-----KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV  355 (381)
Q Consensus       290 k~VTF~W~g-----~AkeVeVaGSF---NnW~~~I-----pM~Kd~~~~~~a~~~skesGvFsttL~LpPG-~YEYKFIV  355 (381)
                      .+|+|....     .++.|+|+|+-   .+|+...     +|..            .....|.+++.||.| ..||||++
T Consensus         3 ~~v~f~~~~~~~t~~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~------------~~~~~W~~~~~lp~~~~veyK~v~   70 (103)
T cd05820           3 IPVIFTVQNTPETAPGEFLYLTGSVPELGNWSTSTDQAVGPLLC------------PNWPDWFVVASVPAGTYIEFKFLK   70 (103)
T ss_pred             ccEEEEEeCCcCcCCCCEEEEEECcHHhCCCChhcccccccccc------------CCCCCEEEEEEcCCCCcEEEEEEE
Confidence            678898863     37999999987   4998632     4532            255789999999998 69999999


Q ss_pred             ---cC--eeecCCCCCeecc
Q 016838          356 ---DG--QWKVDPQRESVTK  370 (381)
Q Consensus       356 ---DG--eW~~DP~~PtVtD  370 (381)
                         ||  .|...++.-...+
T Consensus        71 ~~~~g~v~WE~g~Nr~~~~p   90 (103)
T cd05820          71 APADGTGTWEGGSNHAYTTP   90 (103)
T ss_pred             ECCCCCEEEEeCCCEeEECC
Confidence               55  3877766555444

Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco

>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain

Probab=97.12  E-value=0.0023  Score=50.83  Aligned_cols=73  Identities=14%  Similarity=0.043  Sum_probs=51.1

Q ss_pred             EEEEEEeecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEc-CeeecCCCCCe
Q 016838          290 EVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVD-GQWKVDPQRES  367 (381)
Q Consensus       290 k~VTF~W~g~-AkeVeVaGSFNnW~~~IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG~YEYKFIVD-GeW~~DP~~Pt  367 (381)
                      ..++|+..++ |++|.|...+  |. .++|.++            ..|+|++++..-+|. .|+|.|+ |..+.||....
T Consensus         8 ~~~~F~vwAP~A~~V~l~l~~--~~-~~~m~~~------------~~G~W~~~v~~~~g~-~Y~y~v~~~~~~~DP~a~~   71 (85)
T cd02853           8 GGTRFRLWAPDAKRVTLRLDD--GE-EIPMQRD------------GDGWFEAEVPGAAGT-RYRYRLDDGTPVPDPASRF   71 (85)
T ss_pred             CCEEEEEeCCCCCEEEEEecC--CC-cccCccC------------CCcEEEEEeCCCCCC-eEEEEECCCcCCCCCcccc
Confidence            3578977766 9999999643  43 4788764            689999998533775 4777777 56888999887


Q ss_pred             eccCCccceEE
Q 016838          368 VTKGGICNNIL  378 (381)
Q Consensus       368 VtD~GnvNNVL  378 (381)
                      ...+.+-++++
T Consensus        72 ~~~~~~~~s~v   82 (85)
T cd02853          72 QPEGVHGPSQV   82 (85)
T ss_pred             CCCCCCCCeEe
Confidence            65433334443

MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>PRK14705 glycogen branching enzyme; Provisional

Probab=97.11  E-value=0.0015  Score=74.78  Aligned_cols=67  Identities=33%  Similarity=0.574  Sum_probs=50.1

Q ss_pred             CcEEEEEEeecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEc---Cee--
Q 016838          288 GLEVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD---GQW--  359 (381)
Q Consensus       288 gLk~VTF~W~g~-AkeVeVaGSFNnW~~~-IpM~Kd~~~~~~a~~~skesGvFsttL~-LpPG~YEYKFIVD---GeW--  359 (381)
                      +...|.|+..+| |+.|.|+|+||+|... .+|.+.           ...|+|++.+. +.+|. .|||.|+   |.|  
T Consensus       636 ~~~Gv~F~VWAP~A~~V~vvgdFN~w~~~~~~m~~~-----------~~~GvW~~fipg~~~G~-~Yky~i~~~~g~~~~  703 (1224)
T PRK14705        636 DVDGVSFAVWAPNAQAVRVKGDFNGWDGREHSMRSL-----------GSSGVWELFIPGVVAGA-CYKFEILTKAGQWVE  703 (1224)
T ss_pred             CCCeEEEEEECCCCCEEEEEEEecCCCCCcccceEC-----------CCCCEEEEEECCCCCCC-EEEEEEEcCCCcEEe
Confidence            445788966665 9999999999999864 467653           35799999985 78885 6888885   554  


Q ss_pred             ecCCCCC
Q 016838          360 KVDPQRE  366 (381)
Q Consensus       360 ~~DP~~P  366 (381)
                      +.||-..
T Consensus       704 k~DPyA~  710 (1224)
T PRK14705        704 KADPLAF  710 (1224)
T ss_pred             cCCcccc
Confidence            4576553

>cd02852 Isoamylase_N_term Isoamylase N-terminus domain

Probab=97.09  E-value=0.0017  Score=54.40  Aligned_cols=59  Identities=25%  Similarity=0.415  Sum_probs=43.2

Q ss_pred             EEEEEEeecC-CceEEEEeeeCCCc---c--ccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEcCee
Q 016838          290 EVVEIQYSGD-GEIVEVAGSFNGWH---H--RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQW  359 (381)
Q Consensus       290 k~VTF~W~g~-AkeVeVaGSFNnW~---~--~IpM~Kd~~~~~~a~~~skesGvFsttL~-LpPG~YEYKFIVDGeW  359 (381)
                      ..++|+..++ |+.|.|.. |++|.   +  .++|.++.         ....|+|.+.+. +.+|. .|+|.|+|.|
T Consensus         7 ~g~~F~vwAP~A~~V~L~l-f~~~~~~~~~~~~~m~~~~---------~~~~gvW~~~v~~~~~g~-~Y~y~v~g~~   72 (119)
T cd02852           7 GGVNFSVYSSNATAVELLL-FDPGDGDEPALEIELDPSV---------NRTGDVWHVFVEGLKPGQ-LYGYRVDGPF   72 (119)
T ss_pred             CCEEEEEECCCCCEEEEEE-EeCCCCCCceEEEeCcCcc---------cccCCEEEEEECCCCCCC-EEEEEECCCC
Confidence            3578877665 99999999 88886   2  35676531         124699999985 67886 6999999854

Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase

Probab=96.95  E-value=0.0019  Score=67.72  Aligned_cols=70  Identities=14%  Similarity=0.119  Sum_probs=52.5

Q ss_pred             EEEEeecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEcC-eeecCCCCCee
Q 016838          292 VEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDG-QWKVDPQRESV  368 (381)
Q Consensus       292 VTF~W~g~-AkeVeVaGSFNnW~~~IpM~Kd~~~~~~a~~~skesGvFsttL~-LpPG~YEYKFIVDG-eW~~DP~~PtV  368 (381)
                      |+|+..++ |++|.|.+.   + ..++|.+.            ..|+|++++. +.+| +.|+|.||| .-+.||.....
T Consensus         1 v~FrlwAP~A~~V~L~l~---~-~~~~m~k~------------~~GvW~~~v~~~~~G-~~Y~y~v~g~~~v~DPya~~~   63 (542)
T TIGR02402         1 VRFRLWAPTAASVKLRLN---G-ALHAMQRL------------GDGWFEITVPPVGPG-DRYGYVLDDGTPVPDPASRRQ   63 (542)
T ss_pred             CEEEEECCCCCEEEEEeC---C-CEEeCeEC------------CCCEEEEEECCCCCC-CEEEEEEeeeEEecCcccccc
Confidence            57876665 999999972   3 35789874            6799999996 7788 789999999 68889998876


Q ss_pred             ccCCccceEE
Q 016838          369 TKGGICNNIL  378 (381)
Q Consensus       369 tD~GnvNNVL  378 (381)
                      ..+.+..+++
T Consensus        64 ~~~~~~~S~V   73 (542)
T TIGR02402        64 PDGVHGPSQV   73 (542)
T ss_pred             ccCCCCCeEE
Confidence            5433323443

Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.

>PLN02447 1,4-alpha-glucan-branching enzyme

Probab=96.91  E-value=0.0018  Score=71.07  Aligned_cols=64  Identities=16%  Similarity=0.271  Sum_probs=47.1

Q ss_pred             EEEEEeecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-------eCCeeEEEEEEEc---Ce
Q 016838          291 VVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-------LYPGTYEIKFIVD---GQ  358 (381)
Q Consensus       291 ~VTF~W~g~-AkeVeVaGSFNnW~~~-IpM~Kd~~~~~~a~~~skesGvFsttL~-------LpPG~YEYKFIVD---Ge  358 (381)
                      .++|+..+| |++|.|+|+||+|+.. .+|.+.            +.|+|++.+.       ++.| ..|||.|.   |.
T Consensus       115 g~~FrvWAP~A~~V~LvGdFN~W~~~~~~M~~~------------~~GvWe~~ip~~~g~~~~~~G-~~Yky~i~~~~g~  181 (758)
T PLN02447        115 GITYREWAPGAKAAALIGDFNNWNPNAHWMTKN------------EFGVWEIFLPDADGSPAIPHG-SRVKIRMETPDGR  181 (758)
T ss_pred             CEEEEEECCCCCEEEEEEecCCCCCCccCceeC------------CCCEEEEEECCccccccCCCC-CEEEEEEEeCCCc
Confidence            678866665 9999999999999864 578874            6899999985       3445 36788874   54


Q ss_pred             --eecCCCCCe
Q 016838          359 --WKVDPQRES  367 (381)
Q Consensus       359 --W~~DP~~Pt  367 (381)
                        .+.||-...
T Consensus       182 ~~~r~dpya~~  192 (758)
T PLN02447        182 WVDRIPAWIKY  192 (758)
T ss_pred             EEeecCchHhe
Confidence              456775543

>PRK05402 glycogen branching enzyme; Provisional

Probab=96.90  E-value=0.0033  Score=67.92  Aligned_cols=69  Identities=28%  Similarity=0.452  Sum_probs=49.8

Q ss_pred             EEEEEEeecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCe-eEEEEEEEc-Cee--ecC
Q 016838          290 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-TYEIKFIVD-GQW--KVD  362 (381)
Q Consensus       290 k~VTF~W~g~-AkeVeVaGSFNnW~~~-IpM~Kd~~~~~~a~~~skesGvFsttL~-LpPG-~YEYKFIVD-GeW--~~D  362 (381)
                      ..|+|+..++ |++|.|+|+||+|... .+|.+.           ...|+|.+++. +++| .|.|++..+ |.|  ..|
T Consensus       131 ~gv~FrvwAP~A~~V~l~gdfn~w~~~~~~m~~~-----------~~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~D  199 (726)
T PRK05402        131 SGVRFAVWAPNARRVSVVGDFNGWDGRRHPMRLR-----------GESGVWELFIPGLGEGELYKFEILTADGELLLKAD  199 (726)
T ss_pred             CcEEEEEECCCCCEEEEEEEcCCCCCccccceEc-----------CCCCEEEEEeCCCCCCCEEEEEEeCCCCcEeecCC
Confidence            3688987776 9999999999999764 578763           26799999985 6777 666666654 454  456


Q ss_pred             CCCCeec
Q 016838          363 PQRESVT  369 (381)
Q Consensus       363 P~~PtVt  369 (381)
                      |-.-.+.
T Consensus       200 PYa~~~~  206 (726)
T PRK05402        200 PYAFAAE  206 (726)
T ss_pred             CceEEEe
Confidence            6554433

>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2

Probab=96.86  E-value=0.013  Score=48.08  Aligned_cols=67  Identities=25%  Similarity=0.560  Sum_probs=47.7

Q ss_pred             EEEEeec----CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe--eEEEEEEE--c--
Q 016838          292 VEIQYSG----DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG--TYEIKFIV--D--  356 (381)
Q Consensus       292 VTF~W~g----~AkeVeVaGSF---NnW~~~--IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG--~YEYKFIV--D--  356 (381)
                      |+|+...    .++.|+|+|+-   .+|++.  ++|...            ....|++++.+|++  .++|||++  +  
T Consensus         2 v~f~v~~~~~~~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~------------~~~~W~~~v~~p~~~~~ieYKyvi~~~~~   69 (99)
T cd05816           2 VQFKILCPYVPKGQSVYVTGSSPELGNWDPQKALKLSDV------------GFPIWEADIDISKDSFPFEYKYIIANKDS   69 (99)
T ss_pred             EEEEEEcCccCCCCEEEEEEChHHhCCCCccccccCCCC------------CCCcEEEEEEeCCCCccEEEEEEEEeCCC
Confidence            5666544    48999999986   589853  567642            56789999999886  59999999  2  


Q ss_pred             C--eeecCCCCCeecc
Q 016838          357 G--QWKVDPQRESVTK  370 (381)
Q Consensus       357 G--eW~~DP~~PtVtD  370 (381)
                      |  .|..-++.-....
T Consensus        70 ~~~~WE~g~nr~~~~p   85 (99)
T cd05816          70 GVVSWENGPNRELSAP   85 (99)
T ss_pred             CcEEEEcCCCeEEECC
Confidence            3  2766655444333

DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star

>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase)

Probab=96.79  E-value=0.015  Score=46.14  Aligned_cols=46  Identities=26%  Similarity=0.525  Sum_probs=37.1

Q ss_pred             CCceEEEEeeeC---CCccc--cccCCCCCCCccccccccCCCcEEEEEEeCC--e-eEEEEEEE
Q 016838          299 DGEIVEVAGSFN---GWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYP--G-TYEIKFIV  355 (381)
Q Consensus       299 ~AkeVeVaGSFN---nW~~~--IpM~Kd~~~~~~a~~~skesGvFsttL~LpP--G-~YEYKFIV  355 (381)
                      .++.|+|+|+..   +|++.  ++|...           ...+.|.+++.+|+  | .++|||++
T Consensus        12 ~Ge~l~v~G~~~~LG~W~~~~a~~m~~~-----------~~~~~W~~~v~~~~~~~~~~~yKy~~   65 (96)
T cd05467          12 FGQSVYVVGSHPELGNWDPAKALRLNTS-----------NSYPLWTGEIPLPAPEGQVIEYKYVI   65 (96)
T ss_pred             CCCEEEEEeCcHHhCCcChhcCccccCC-----------CCCCcEEEEEEecCCCCCeEEEEEEE
Confidence            489999999984   89853  567653           12689999999998  7 79999999

CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.

>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=96.75  E-value=0.0053  Score=50.59  Aligned_cols=45  Identities=24%  Similarity=0.449  Sum_probs=36.6

Q ss_pred             CCceEEEEee---eCCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE
Q 016838          299 DGEIVEVAGS---FNGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV  355 (381)
Q Consensus       299 ~AkeVeVaGS---FNnW~~~--IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG-~YEYKFIV  355 (381)
                      .|+.|+|+|+   ..+|++.  ++|...            ....|++++.+|+| .++|||+|
T Consensus        12 ~Ge~l~v~Gs~~~LG~W~~~~a~~m~~~------------~~~~W~~~v~lp~~~~veYKY~i   62 (100)
T cd05817          12 FGEAVYISGNCNQLGNWNPSKAKRMQWN------------EGDLWTVDVGIPESVYIEYKYFV   62 (100)
T ss_pred             CCCEEEEEeCcHHHCCCCccccCcccCC------------CCCCEEEEEEECCCCcEEEEEEE
Confidence            4899999999   4689864  567542            45789999999988 69999999

This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.

>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=96.72  E-value=0.015  Score=47.88  Aligned_cols=74  Identities=20%  Similarity=0.221  Sum_probs=50.2

Q ss_pred             cEEEEEEee-c---CCceEEEEeee---CCCcccc--ccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---
Q 016838          289 LEVVEIQYS-G---DGEIVEVAGSF---NGWHHRI--KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---  355 (381)
Q Consensus       289 Lk~VTF~W~-g---~AkeVeVaGSF---NnW~~~I--pM~Kd~~~~~~a~~~skesGvFsttL~LpPG-~YEYKFIV---  355 (381)
                      .++|+|... .   .++.|+|+|+-   .+|++..  .|...        ........|++.+.||.| .++|||++   
T Consensus         2 ~v~v~f~v~~~~t~~Gq~l~v~Gs~~~LG~W~~~~a~~~~~~--------~~~~~~~~W~~~~~lp~~~~~eyK~~~~~~   73 (101)
T cd05807           2 QVSVRFVVNNATTQLGENVYLVGNVHELGNWDPSKAIGPFFN--------QVVYQYPNWYYDVSVPAGTTIEFKFIKKNG   73 (101)
T ss_pred             cEEEEEEEeccccCCCCEEEEEECHHHHCCCChHHccccccc--------cCCCcCCcEEEEEEcCCCCcEEEEEEEECC
Confidence            367888874 2   38999999987   4998642  22210        011255789999999998 69999999   


Q ss_pred             cCe--eecCCCCCeecc
Q 016838          356 DGQ--WKVDPQRESVTK  370 (381)
Q Consensus       356 DGe--W~~DP~~PtVtD  370 (381)
                      ||.  |...++.-....
T Consensus        74 ~~~~~WE~g~nr~~~~p   90 (101)
T cd05807          74 DNTVTWESGSNHTYTAP   90 (101)
T ss_pred             CCCEEEEeCCCEEEeCC
Confidence            453  877665444433

CGTase, also known as cyclodextrin glycosyltransferase and cyclodextrin glucanotransferase, catalyzes the formation of various cyclodextrins (alpha-1,4-glucans) from starch. CGTase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13 and an IPT domain of unknown function. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific

>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=96.68  E-value=0.0071  Score=49.01  Aligned_cols=53  Identities=28%  Similarity=0.511  Sum_probs=41.2

Q ss_pred             EEEEEeec----CCceEEEEeee---CCCccccccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE
Q 016838          291 VVEIQYSG----DGEIVEVAGSF---NGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV  355 (381)
Q Consensus       291 ~VTF~W~g----~AkeVeVaGSF---NnW~~~IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG-~YEYKFIV  355 (381)
                      +|+|+...    +++.|+|+|+=   .+|+...+|...            ..+.|.+++.||++ .++|||++
T Consensus         2 ~v~F~v~~~t~~~~e~l~v~G~~~~LG~W~~~~~l~~~------------~~~~W~~~v~lp~~~~ieYky~~   62 (95)
T cd05813           2 NVTFRVHYITHSDAQLVAVTGDHEELGSWHSYIPLQYV------------KDGFWSASVSLPVDTHVEWKFVL   62 (95)
T ss_pred             eEEEEEEeeeCCCCeEEEEEcChHHHCCCCccccCcCC------------CCCCEEEEEEecCCCcEEEEEEE
Confidence            56776644    35778899986   489877788642            45789999999998 59999998

Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.

>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase

Probab=96.52  E-value=0.0081  Score=63.81  Aligned_cols=68  Identities=24%  Similarity=0.324  Sum_probs=50.4

Q ss_pred             EEEEEEeecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEc---Ce--eec
Q 016838          290 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD---GQ--WKV  361 (381)
Q Consensus       290 k~VTF~W~g~-AkeVeVaGSFNnW~~~-IpM~Kd~~~~~~a~~~skesGvFsttL~-LpPG~YEYKFIVD---Ge--W~~  361 (381)
                      ..++|+..+| |+.|.|+|+||+|... .+|.+.           ...|+|++.+. +.+|. .|+|.|+   |.  ++.
T Consensus        28 ~g~~FrvwAP~A~~V~L~~dfn~w~~~~~~m~~~-----------~~~Gvw~~~i~~~~~g~-~Y~y~v~~~~g~~~~~~   95 (613)
T TIGR01515        28 SGTRFCVWAPNAREVRVAGDFNYWDGREHPMRRR-----------NDNGIWELFIPGIGEGE-LYKYEIVTNNGEIRLKA   95 (613)
T ss_pred             CcEEEEEECCCCCEEEEEEecCCCCCceecceEe-----------cCCCEEEEEeCCCCCCC-EEEEEEECCCCcEEEeC
Confidence            4678977665 9999999999999764 477653           24799999885 46665 5888884   54  477


Q ss_pred             CCCCCeec
Q 016838          362 DPQRESVT  369 (381)
Q Consensus       362 DP~~PtVt  369 (381)
                      ||-.-.+.
T Consensus        96 DPYA~~~~  103 (613)
T TIGR01515        96 DPYAFYAE  103 (613)
T ss_pred             CCCEeeec
Confidence            88776544

A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.

>PRK05402 glycogen branching enzyme; Provisional

Probab=96.28  E-value=0.0079  Score=65.08  Aligned_cols=63  Identities=21%  Similarity=0.077  Sum_probs=45.8

Q ss_pred             EEEEEeec-CCceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEE--cCe--eecCCCC
Q 016838          291 VVEIQYSG-DGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV--DGQ--WKVDPQR  365 (381)
Q Consensus       291 ~VTF~W~g-~AkeVeVaGSFNnW~~~IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG~YEYKFIV--DGe--W~~DP~~  365 (381)
                      -++|+..+ .|++|.|+|+||+ ....+|.+.           ...|+|++.+.+..|.. |||.|  ||+  .+.||-.
T Consensus        29 g~~f~vwaP~A~~V~vvgdfn~-~~~~~m~~~-----------~~~G~w~~~ip~~~g~~-YKy~i~~~g~~~~k~DPya   95 (726)
T PRK05402         29 GLVVRALLPGAEEVWVILPGGG-RKLAELERL-----------HPRGLFAGVLPRKGPFD-YRLRVTWGGGEQLIDDPYR   95 (726)
T ss_pred             cEEEEEECCCCeEEEEEeecCC-CccccceEc-----------CCCceEEEEecCCCCCC-eEEEEEeCCceeEeccccc
Confidence            46775544 5999999999996 344688763           36799999999777743 66666  885  5667766


Q ss_pred             C
Q 016838          366 E  366 (381)
Q Consensus       366 P  366 (381)
                      -
T Consensus        96 f   96 (726)
T PRK05402         96 F   96 (726)
T ss_pred             c
Confidence            3

>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=96.04  E-value=0.039  Score=45.58  Aligned_cols=67  Identities=27%  Similarity=0.446  Sum_probs=47.0

Q ss_pred             EEEEEee-c---CCceEEEEeeeC---CCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---cC
Q 016838          291 VVEIQYS-G---DGEIVEVAGSFN---GWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG  357 (381)
Q Consensus       291 ~VTF~W~-g---~AkeVeVaGSFN---nW~~~--IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG-~YEYKFIV---DG  357 (381)
                      .|+|... .   .++.|+|+|+-.   +|++.  ++|...            ....|.+.+.||.| ..+|||++   +|
T Consensus         2 ~v~f~~~~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~l~~~------------~~~~W~~~v~lp~~~~veyKyv~~~~~~   69 (97)
T cd05810           2 SVTFSCNNGTTQLGQSVYVVGNVPQLGNWSPADAVKLDPT------------AYPTWSGSISLPASTNVEWKCLKRNETN   69 (97)
T ss_pred             eEEEEEeecccCCCCeEEEEEChHHhCCCChhhcccccCC------------CCCeEEEEEEcCCCCeEEEEEEEEcCCC
Confidence            4566533 2   489999999874   99864  456432            45789999999998 79999998   22


Q ss_pred             -----eeecCCCCCeec
Q 016838          358 -----QWKVDPQRESVT  369 (381)
Q Consensus       358 -----eW~~DP~~PtVt  369 (381)
                           .|...++.-...
T Consensus        70 ~~~~v~WE~g~Nr~~~~   86 (97)
T cd05810          70 PTAGVQWQGGGNNQLTT   86 (97)
T ss_pred             CcceEEEeeCCCEEEeC
Confidence                 476666554333

Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio

>PLN02316 synthase/transferase

Probab=95.66  E-value=0.16  Score=58.02  Aligned_cols=61  Identities=13%  Similarity=0.395  Sum_probs=44.6

Q ss_pred             EEEEEEeec------CCceEEEEeeeCCCccccc--cCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEE-cC
Q 016838          290 EVVEIQYSG------DGEIVEVAGSFNGWHHRIK--MDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV-DG  357 (381)
Q Consensus       290 k~VTF~W~g------~AkeVeVaGSFNnW~~~Ip--M~Kd~~~~~~a~~~skesGvFsttL~LpPG~YEYKFIV-DG  357 (381)
                      .+|++-|..      ...+|.|.|.||+|.....  +...       +.....++.|.+++.+|+.-|-.-|+. ||
T Consensus       329 ~~v~lyYN~~~~~L~~~~~v~i~gg~N~W~~~~~~~~~~~-------~~~~~~g~ww~a~v~vP~~A~~mDfVFsdg  398 (1036)
T PLN02316        329 DTVKLYYNRSSGPLAHSTEIWIHGGYNNWIDGLSIVEKLV-------KSEEKDGDWWYAEVVVPERALVLDWVFADG  398 (1036)
T ss_pred             CEEEEEECCCCCCCCCCCcEEEEEeEcCCCCCCcccceee-------cccCCCCCEEEEEEecCCCceEEEEEEecC
Confidence            588888873      3689999999999986421  1111       112234558899999999999999998 66

>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1

Probab=95.43  E-value=0.052  Score=44.46  Aligned_cols=65  Identities=18%  Similarity=0.379  Sum_probs=43.8

Q ss_pred             EEEEeec---CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---cCe-
Q 016838          292 VEIQYSG---DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DGQ-  358 (381)
Q Consensus       292 VTF~W~g---~AkeVeVaGSF---NnW~~~--IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG-~YEYKFIV---DGe-  358 (381)
                      |+|...+   .|+.|.|+|+-   .+|+..  ++|...         .+.....|++++.+|++ .++|||+|   ||. 
T Consensus         2 l~f~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~---------~~~~~~~W~~~v~~~~~~~veYky~v~~~~~~~   72 (101)
T cd05815           2 LSFKLPYYTQWGQSLLICGSDPLLGSWNVKKGLLLKPS---------HQGDVLVWSGSISVPPGFSSEYNYYVVDDRKSV   72 (101)
T ss_pred             EEEEEEEEccCCCEEEEEcChHHcCCcChHhcEeeeec---------CCCCCCEEEEEEEeCCCCcEEEEEEEEcCCCcE
Confidence            4555443   38999999987   589753  567431         11234589999999887 59999999   342 


Q ss_pred             --eecCCCC
Q 016838          359 --WKVDPQR  365 (381)
Q Consensus       359 --W~~DP~~  365 (381)
                        |-..++.
T Consensus        73 ~~wE~g~nr   81 (101)
T cd05815          73 LRSESGEKR   81 (101)
T ss_pred             EEeecCCCE
Confidence              6555543

DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol

>TIGR02104 pulA_typeI pullulanase, type I

Probab=94.89  E-value=0.1  Score=55.48  Aligned_cols=65  Identities=25%  Similarity=0.281  Sum_probs=46.8

Q ss_pred             EEEEEeecC-CceEEEEeeeCCCcc-----ccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEE--cCe--e
Q 016838          291 VVEIQYSGD-GEIVEVAGSFNGWHH-----RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIV--DGQ--W  359 (381)
Q Consensus       291 ~VTF~W~g~-AkeVeVaGSFNnW~~-----~IpM~Kd~~~~~~a~~~skesGvFsttL~-LpPG~YEYKFIV--DGe--W  359 (381)
                      .|+|+..++ |++|.|.+ |++|..     .++|.+.            ..|+|++.+. +.+|. .|+|.|  +|.  +
T Consensus        20 ~~~F~vwaP~a~~V~l~~-~~~~~~~~~~~~~~m~~~------------~~gvw~~~i~~~~~g~-~Y~y~v~~~~~~~~   85 (605)
T TIGR02104        20 KTVFRVWAPTATEVELLL-YKSGEDGEPYKVVKMKRG------------ENGVWSAVLEGDLHGY-FYTYQVCINGKWRE   85 (605)
T ss_pred             eeEEEEECCCCCEEEEEE-EcCCCCCccceEEecccC------------CCCEEEEEECCCCCCC-EEEEEEEcCCCeEE
Confidence            488977666 99999997 888853     3578763            6799999996 56663 355555  565  5


Q ss_pred             ecCCCCCeec
Q 016838          360 KVDPQRESVT  369 (381)
Q Consensus       360 ~~DP~~PtVt  369 (381)
                      +.||-...+.
T Consensus        86 ~~DPya~~~~   95 (605)
T TIGR02104        86 TVDPYAKAVT   95 (605)
T ss_pred             EcCCCcceec
Confidence            8899876554

Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.

>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity

Probab=94.00  E-value=0.14  Score=41.77  Aligned_cols=63  Identities=24%  Similarity=0.561  Sum_probs=38.6

Q ss_pred             EEEEEeec------CCceEEEEeeeCCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEE-cC--ee
Q 016838          291 VVEIQYSG------DGEIVEVAGSFNGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV-DG--QW  359 (381)
Q Consensus       291 ~VTF~W~g------~AkeVeVaGSFNnW~~~--IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG~YEYKFIV-DG--eW  359 (381)
                      +|++.|..      ++.+|.+.+.|++|...  +.|.+.        +.....+.|.+++.+|..-|+..|+. ||  .|
T Consensus         3 ~vtVyYn~~~~~l~g~~~v~~~~G~n~W~~~~~~~m~~~--------~~~~~~~~~~~tv~vP~~a~~~dfvF~dg~~~w   74 (87)
T PF03423_consen    3 TVTVYYNPSLTALSGAPNVHLHGGFNRWTHVPGFGMTKM--------CVPDEGGWWKATVDVPEDAYVMDFVFNDGAGNW   74 (87)
T ss_dssp             EEEEEE---E-SSS-S-EEEEEETTS-B-SSS-EE-EEE--------SS---TTEEEEEEE--TTTSEEEEEEE-SSS-E
T ss_pred             EEEEEEEeCCCCCCCCCcEEEEecCCCCCcCCCCCccee--------eeeecCCEEEEEEEEcCCceEEEEEEcCCCCcE
Confidence            67777743      37899999999999865  456553        11123799999999999999999998 65  56


Q ss_pred             ec
Q 016838          360 KV  361 (381)
Q Consensus       360 ~~  361 (381)
                      -.
T Consensus        75 DN   76 (87)
T PF03423_consen   75 DN   76 (87)
T ss_dssp             ES
T ss_pred             eC
Confidence            43

A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.

>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=93.85  E-value=0.54  Score=40.71  Aligned_cols=55  Identities=22%  Similarity=0.416  Sum_probs=37.8

Q ss_pred             eecCCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe----eEEEEEEE
Q 016838          296 YSGDGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG----TYEIKFIV  355 (381)
Q Consensus       296 W~g~AkeVeVaGSF---NnW~~~--IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG----~YEYKFIV  355 (381)
                      +..++++|+|+|+-   .+|+..  ++|....-    + ........|.+.+.|++|    .++|||+.
T Consensus        11 ~~~~gq~v~IvGsipeLG~Wd~~~Av~Ls~~~y----t-~~~~~~~~W~~~v~lp~~~~~~~~eYKfv~   74 (112)
T cd05806          11 FADRDTELLVLGSRPELGSWDPQRAVPMRPARK----A-LSPQEPSLWLGEVELSEPGSEDTFWYKFLK   74 (112)
T ss_pred             ecCCCCEEEEEECchhcCCCCcccccccccccc----c-ccCCCCCEEEEEEEcCCCCcCceEEEEEEE
Confidence            44568999999985   589864  45653200    0 001244579999999986    79999998

Laforin, encoded by the EPM2A gene, is a dual-specificity phosphatase that dephosphorylates complex carbohydrates. Mutations in the gene encoding laforin result in Lafora disease, a fatal autosomal recessive neurodegenerative disorder characterized by the presence of intracellular deposits of insoluble, abnormally branched, glycogen-like polymers, known as Lafora bodies, in neurons, muscle, liver, and other tissues. The molecular basis for the formation of these Lafora bodies is unknown. Laforin is one of the only phosphatases that contains a carbohydrate-binding module. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen

>PLN02316 synthase/transferase

Probab=92.84  E-value=0.5  Score=54.10  Aligned_cols=56  Identities=27%  Similarity=0.427  Sum_probs=43.3

Q ss_pred             cEEEEEEeecC------CceEEEEeeeCCCcccc------ccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEE
Q 016838          289 LEVVEIQYSGD------GEIVEVAGSFNGWHHRI------KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV  355 (381)
Q Consensus       289 Lk~VTF~W~g~------AkeVeVaGSFNnW~~~I------pM~Kd~~~~~~a~~~skesGvFsttL~LpPG~YEYKFIV  355 (381)
                      -.+|++-|...      ..+|++.|+||.|.+..      .|.+.           ...+.|.+++.+|..-|-..|+.
T Consensus       490 G~~v~v~Yn~~~t~l~~~~ev~~~g~~NrWth~~~~~~~~~m~~~-----------~~g~~~~a~v~vP~da~~mdfvF  557 (1036)
T PLN02316        490 GTTVTVLYNPANTVLNGKPEVWFRGSFNRWTHRLGPLPPQKMVPA-----------DNGSHLKATVKVPLDAYMMDFVF  557 (1036)
T ss_pred             CCEEEEEECCCCCcCCCCceEEEEccccCcCCCCCCCCceeeeec-----------CCCceEEEEEEccccceEEEEEE
Confidence            36889988652      58999999999998753      24432           23345689999999999999988

>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX

Probab=92.76  E-value=0.3  Score=53.20  Aligned_cols=55  Identities=22%  Similarity=0.371  Sum_probs=41.4

Q ss_pred             EEEEEeecC-CceEEEEeeeCCCcc----ccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEcCee
Q 016838          291 VVEIQYSGD-GEIVEVAGSFNGWHH----RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQW  359 (381)
Q Consensus       291 ~VTF~W~g~-AkeVeVaGSFNnW~~----~IpM~Kd~~~~~~a~~~skesGvFsttL~-LpPG~YEYKFIVDGeW  359 (381)
                      .|+|+..++ |+.|.|. -|++|..    .++|.+.            ..|+|.+.+. +.+|.| |+|.|+|.|
T Consensus        15 g~~F~vwap~A~~V~L~-l~~~~~~~~~~~~~m~~~------------~~gvW~~~v~~~~~g~~-Y~yrv~g~~   75 (688)
T TIGR02100        15 GVNFALFSANAEKVELC-LFDAQGEKEEARLPLPER------------TDDIWHGYLPGAQPGQL-YGYRVHGPY   75 (688)
T ss_pred             cEEEEEECCCCCEEEEE-EEcCCCCceeeEEecccC------------CCCEEEEEECCCCCCCE-EEEEEeeee
Confidence            578977776 9999996 6766542    3567653            6799999995 778875 999999853

This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.

>PLN02950 4-alpha-glucanotransferase

Probab=92.46  E-value=0.82  Score=51.66  Aligned_cols=70  Identities=20%  Similarity=0.386  Sum_probs=52.0

Q ss_pred             cEEEEEEeec----CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe--eEEEEEEE--
Q 016838          289 LEVVEIQYSG----DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG--TYEIKFIV--  355 (381)
Q Consensus       289 Lk~VTF~W~g----~AkeVeVaGSF---NnW~~~--IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG--~YEYKFIV--  355 (381)
                      .++|+|....    .|+.|+|+|+-   .+|++.  ++|..            .....|.+++.++++  ..+|||++  
T Consensus       152 ~v~V~F~v~~~~~~~Gq~v~VvGs~~eLGnW~~~~a~~Ls~------------~~~p~W~~~v~lp~~~~~~EYKyv~~~  219 (909)
T PLN02950        152 EIVVRFKIACPRLEEGTSVYVTGSIAQLGNWQVDDGLKLNY------------TGDSIWEADCLVPKSDFPIKYKYALQT  219 (909)
T ss_pred             ceeEEEEEecCccCCCCeEEEEechhhcCCCCccccccccc------------CCCCcEEEEEEecCCCceEEEEEEEEc
Confidence            3678888644    48999999987   499864  34543            256889999999988  59999999  


Q ss_pred             -cC--eeecCCCCCeecc
Q 016838          356 -DG--QWKVDPQRESVTK  370 (381)
Q Consensus       356 -DG--eW~~DP~~PtVtD  370 (381)
                       +|  .|...++.-...+
T Consensus       220 ~~g~v~WE~g~NR~~~~p  237 (909)
T PLN02950        220 AEGLVSLELGVNRELSLD  237 (909)
T ss_pred             CCCceEEeeCCCceeecC
Confidence             44  3877776655554

>PF11806 DUF3327: Domain of unknown function (DUF3327); InterPro: IPR021764 This entry represents the N-terminal domain of enterochelin esterase

Probab=92.42  E-value=0.81  Score=39.72  Aligned_cols=79  Identities=22%  Similarity=0.282  Sum_probs=53.1

Q ss_pred             EEEEEEee----cCCceEEEEeeeCCCccc-----cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEEcCe-
Q 016838          290 EVVEIQYS----GDGEIVEVAGSFNGWHHR-----IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIVDGQ-  358 (381)
Q Consensus       290 k~VTF~W~----g~AkeVeVaGSFNnW~~~-----IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG-~YEYKFIVDGe-  358 (381)
                      ..|||-|.    +....|.|-|..|+....     ..|.+-           .+..+|..++.|+.+ +-.|.|+.+-. 
T Consensus         2 ~~VTFlWRdp~~~~~~~~~V~~~~ngvtD~~~~~~~~l~Rl-----------~gTDVW~~t~~lp~d~rgSY~~~p~~~~   70 (122)
T PF11806_consen    2 CLVTFLWRDPDEGASANVRVYGDINGVTDHHDPDPQSLQRL-----------PGTDVWYWTYRLPADWRGSYSFIPDVPD   70 (122)
T ss_dssp             -EEEEEEE-TSTTT----EEEEEETTTTCGGGT---BEEE------------TTSSEEEEEEEEETT-EEEEEEEEES-T
T ss_pred             cEEEEEEeCCCCCCCceeEEEEECCcccccccCChhhheeC-----------CCCceEEEEEEECcccEEEEEEEecCcc
Confidence            47999999    446889999999999653     346654           356899999999998 88999997533 


Q ss_pred             ---------------eecCCCCCeec-c----CCccceEEE
Q 016838          359 ---------------WKVDPQRESVT-K----GGICNNILR  379 (381)
Q Consensus       359 ---------------W~~DP~~PtVt-D----~GnvNNVL~  379 (381)
                                     -+.||-||... .    .|+.-++++
T Consensus        71 ~~~~~r~~~r~~l~~~~~DPlNp~~~~~~~~~~g~~~S~l~  111 (122)
T PF11806_consen   71 ARGAQREWWRAILAQAQADPLNPRPWPNGAQDRGNAASVLE  111 (122)
T ss_dssp             -HHHHHHHHHHHGGG-B--TTSSSEEE-TT---SSEEEEEE
T ss_pred             cchhHHHHHHHHHhccCCCCCCCCCCCCCccccccccCcee
Confidence                           35699999775 2    267777765

The activity of the enzyme has been characterised [, ]. Fes catalyses the hydrolysis of the 2,3-dihydroxy-N-benzoyl-L-serine trimer, enterochelin, forming 2,3-dihydroxybenzoylserine. It also catalyses hydrolysis of free enterobactin and ferric enterobactin. Upon hydrolysis of ferric enterobactin by Fes, released iron is probably reduced by a second enzyme. Enterochelin esterase represents a family of non-peptidase homologues belonging to the MEROPS peptidase family S9, clan SC. ; GO: 0005506 iron ion binding, 0008849 enterochelin esterase activity, 0006826 iron ion transport, 0005737 cytoplasm; PDB: 3MGA_B 3C87_B 3C8H_B 3C8D_A 2B20_A.

>PRK10439 enterobactin/ferric enterobactin esterase; Provisional

Probab=92.11  E-value=0.66  Score=47.45  Aligned_cols=81  Identities=20%  Similarity=0.225  Sum_probs=56.4

Q ss_pred             CCcEEEEEEeecC-C-------ceEEEEeeeCCCc------cccccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEE
Q 016838          287 SGLEVVEIQYSGD-G-------EIVEVAGSFNGWH------HRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEI  351 (381)
Q Consensus       287 sgLk~VTF~W~g~-A-------keVeVaGSFNnW~------~~IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG-~YEY  351 (381)
                      .+.+.|||-|+++ +       +.|+|.+  |+..      ....|.+-           ....+|..++.||.. +-.|
T Consensus        36 ~~~~~vTFlwr~~~~~~~~~~~~~v~~~~--n~~tdh~~~~~~~~l~rl-----------~~tDvW~~~~~~p~~~r~sY  102 (411)
T PRK10439         36 DGMVRVTFWWRDPQGDEEHSTIRRVWIYI--NGVTDHHQNSQPQSLQRI-----------AGTDVWQWSTELSANWRGSY  102 (411)
T ss_pred             CCcEEEEEEeeCCCCCcccccceeEEEeC--CCCCCcCccCCcchhhcc-----------CCCceEEEEEEECcccEEEE
Confidence            4568999999985 3       3588743  3333      22357775           367899999999999 8999


Q ss_pred             EEEEc---C-------------------------eeecCCCCCeeccC--CccceEEEe
Q 016838          352 KFIVD---G-------------------------QWKVDPQRESVTKG--GICNNILRV  380 (381)
Q Consensus       352 KFIVD---G-------------------------eW~~DP~~PtVtD~--GnvNNVL~V  380 (381)
                      +|+++   .                         .-+.||.||....+  |+..|+|++
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~l~~~~~~DP~N~~~~~~~~~~~~S~l~l  161 (411)
T PRK10439        103 CFIPTERDDIFSAFAPAPSPDRLELREGWRKLLPQAIADPLNPQSWRGGRGHAVSALEM  161 (411)
T ss_pred             EEEeccccccccccccccchhHHHHHHHHHHhhccccCCCCCCCCCCCCCccccccccC
Confidence            99993   1                         11479999987642  444577654

>PLN02960 alpha-amylase

Probab=91.97  E-value=0.14  Score=57.46  Aligned_cols=59  Identities=19%  Similarity=0.365  Sum_probs=43.1

Q ss_pred             EEEE-EeecCCceEEEEeeeCCCccccc-cCCCCCCCccccccccCCCcEEEEEE--eCCe-------eEEEEEEEc
Q 016838          291 VVEI-QYSGDGEIVEVAGSFNGWHHRIK-MDPLPSSSIIEPIRSRKSRLWSTVLW--LYPG-------TYEIKFIVD  356 (381)
Q Consensus       291 ~VTF-~W~g~AkeVeVaGSFNnW~~~Ip-M~Kd~~~~~~a~~~skesGvFsttL~--LpPG-------~YEYKFIVD  356 (381)
                      -|.| .|..+|..+.|+|+||||++... |.+       +-.++.+-|+|.++++  |.+|       .-||.|..|
T Consensus       129 ~~~~~~wap~a~~~~~~gdfn~w~~~~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (897)
T PLN02960        129 RVDFMEWAPGARYCSLVGDFNNWSPTENRARE-------GYFGHDDFGYWFIILEDKLREGEEPDELYFQEYNYVDD  198 (897)
T ss_pred             CeEEEEEcCCceeEEEeecccCCCcccchhhc-------ccccccccceEEEEechhhhcCCCcchhhhhhhccccc
Confidence            5666 66667999999999999998643 432       1134457899999984  7777       236888876

>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive

Probab=90.56  E-value=0.64  Score=53.57  Aligned_cols=66  Identities=15%  Similarity=0.231  Sum_probs=48.2

Q ss_pred             EEEEEeecC-CceEEEEee-eCCCcc---ccccCCCCCCCccccccccCCCcEEEEEE-eCCe-----eEEEEEEEcC--
Q 016838          291 VVEIQYSGD-GEIVEVAGS-FNGWHH---RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-----TYEIKFIVDG--  357 (381)
Q Consensus       291 ~VTF~W~g~-AkeVeVaGS-FNnW~~---~IpM~Kd~~~~~~a~~~skesGvFsttL~-LpPG-----~YEYKFIVDG--  357 (381)
                      .++|+..++ |++|.|.+- +++|..   .++|.+.            ..|+|++.+. +.+|     -|.|+|.|+|  
T Consensus       328 ~v~F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m~~~------------~~GvW~v~v~~~~~G~~d~~G~~Y~Y~V~~~~  395 (1111)
T TIGR02102       328 TVTLKLWSPSADHVSVVLYDKDDQDKVVGTVELKKG------------DRGVWEVQLTKENTGIDSLTGYYYHYEITRGG  395 (1111)
T ss_pred             CEEEEEECCCCCEEEEEEEeCCCCCCceeeEecccC------------CCCEEEEEECCcccCcccCCCceEEEEEECCC
Confidence            378977766 999999984 455653   4678763            6899999986 4443     4789999976  


Q ss_pred             --eeecCCCCCee
Q 016838          358 --QWKVDPQRESV  368 (381)
Q Consensus       358 --eW~~DP~~PtV  368 (381)
                        ..+.||-...+
T Consensus       396 ~~~~~~DPYA~al  408 (1111)
T TIGR02102       396 DKVLALDPYAKSL  408 (1111)
T ss_pred             ceEEEeChhheEE
Confidence              46778876644

Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).

>PLN02950 4-alpha-glucanotransferase

Probab=90.39  E-value=1.6  Score=49.45  Aligned_cols=67  Identities=18%  Similarity=0.440  Sum_probs=46.7

Q ss_pred             EEEEEEeec---CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---cC
Q 016838          290 EVVEIQYSG---DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG  357 (381)
Q Consensus       290 k~VTF~W~g---~AkeVeVaGSF---NnW~~~--IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG-~YEYKFIV---DG  357 (381)
                      ..|+|....   .|++|.|+|+-   .+|+..  ++|...         +......|++++.|++| ..+|||++   ||
T Consensus         9 V~V~F~i~y~T~~GQ~l~VvGs~~~LG~Wd~~kA~~Ls~~---------~~~d~~~W~~~v~lp~~~~ieYKYv~v~~~g   79 (909)
T PLN02950          9 VTLSFRIPYYTQWGQSLLVCGSEPLLGSWNVKKGLLLSPV---------HQGDELVWEGSVSVPEGFSCEYSYYVVDDNK   79 (909)
T ss_pred             EEEEEEeEEecCCCCeEEEEecchhcCCCCcccceecccc---------cCCCCCeEEEEEEecCCCeEEEEEEEEeCCC
Confidence            556666553   38999999988   489753  566432         11234589999999988 69999995   44


Q ss_pred             e---eecCCCC
Q 016838          358 Q---WKVDPQR  365 (381)
Q Consensus       358 e---W~~DP~~  365 (381)
                      .   |...++.
T Consensus        80 ~vi~WE~g~NR   90 (909)
T PLN02950         80 NVLRWEAGKKR   90 (909)
T ss_pred             ceeeeecCCCe
Confidence            3   7666643

>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type

Probab=89.99  E-value=1  Score=51.00  Aligned_cols=68  Identities=19%  Similarity=0.236  Sum_probs=48.2

Q ss_pred             EEEEEEeecC-CceEEEEeeeCCCc--cccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEc------Ce-
Q 016838          290 EVVEIQYSGD-GEIVEVAGSFNGWH--HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD------GQ-  358 (381)
Q Consensus       290 k~VTF~W~g~-AkeVeVaGSFNnW~--~~IpM~Kd~~~~~~a~~~skesGvFsttL~-LpPG~YEYKFIVD------Ge-  358 (381)
                      ..++|+..+| |+.|.|.+.+++|.  ..++|.++           ...|+|++.+. ...|.| |+|.|+      |+ 
T Consensus       135 ~gv~FrVWAPtA~~V~L~Ly~~~~~~~~~~~M~~~-----------~~~GVWsv~v~g~~~G~~-Y~Y~V~v~~p~~G~v  202 (898)
T TIGR02103       135 SGVTFRLWAPTAQQVKLHIYSASKKVETTLPMTRD-----------STSGVWSAEGGSSWKGAY-YRYEVTVYHPSTGKV  202 (898)
T ss_pred             CcEEEEEECCCCCEEEEEEEcCCCCccceEeCccC-----------CCCCEEEEEECcCCCCCE-eEEEEEEecCCCCeE
Confidence            4688977776 99999997776664  23578763           25799999985 456653 777775      54 


Q ss_pred             ---eecCCCCCeec
Q 016838          359 ---WKVDPQRESVT  369 (381)
Q Consensus       359 ---W~~DP~~PtVt  369 (381)
                         .+.||....+.
T Consensus       203 ~~~~v~DPYA~als  216 (898)
T TIGR02103       203 ETYLVTDPYSVSLS  216 (898)
T ss_pred             CCeEEeCcCcceEc
Confidence               37788776554

Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).

>PRK03705 glycogen debranching enzyme; Provisional

Probab=89.90  E-value=0.71  Score=50.29  Aligned_cols=65  Identities=26%  Similarity=0.446  Sum_probs=47.0

Q ss_pred             EEEEEeecC-CceEEEEeeeCCCc--cccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEcCee-------
Q 016838          291 VVEIQYSGD-GEIVEVAGSFNGWH--HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQW-------  359 (381)
Q Consensus       291 ~VTF~W~g~-AkeVeVaGSFNnW~--~~IpM~Kd~~~~~~a~~~skesGvFsttL~-LpPG~YEYKFIVDGeW-------  359 (381)
                      .|+|+..++ |+.|.|.. |+++.  ..++|.+            ...|+|.+.+. +.+|. .|+|.|+|.|       
T Consensus        20 g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~------------~~~gvW~~~v~~~~~G~-~Y~yrv~g~~~p~~g~~   85 (658)
T PRK03705         20 GVNFTLFSAHAERVELCV-FDENGQEQRYDLPA------------RSGDIWHGYLPGARPGL-RYGYRVHGPWQPAQGHR   85 (658)
T ss_pred             CEEEEEECCCCCEEEEEE-EcCCCCeeeEeeee------------ccCCEEEEEECCCCCCC-EEEEEEccccCcccCcc
Confidence            588977666 99999997 77653  2457765            26799999985 66775 5999999853       


Q ss_pred             ------ecCCCCCeec
Q 016838          360 ------KVDPQRESVT  369 (381)
Q Consensus       360 ------~~DP~~PtVt  369 (381)
                            ..||-...+.
T Consensus        86 ~~~~~~~~DPYA~~~~  101 (658)
T PRK03705         86 FNPAKLLIDPCARQVE  101 (658)
T ss_pred             cCCCcEecCcCceEEc
Confidence                  4677665543

>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain

Probab=85.80  E-value=3.7  Score=33.28  Aligned_cols=58  Identities=14%  Similarity=0.055  Sum_probs=38.0

Q ss_pred             EEEEEEeec---CCceEEEEeeeCC--Cc-cccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEE
Q 016838          290 EVVEIQYSG---DGEIVEVAGSFNG--WH-HRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV  355 (381)
Q Consensus       290 k~VTF~W~g---~AkeVeVaGSFNn--W~-~~IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG~YEYKFIV  355 (381)
                      .+|+|+...   +...|.|.---+.  |. ..++|.+..        .+.....|++++.++.|++.|.|+|
T Consensus        16 ~~v~irlr~~~~~v~~v~l~~~~~~~~~~~~~~~M~~~~--------~~~~~~~~~~~i~~~~~~~~Y~F~l   79 (116)
T cd02857          16 DTLHIRLRTKKGDVAKVYLRYGDPYDKGEEEEVPMRKDG--------SDELFDYWEATLPPPTGRLRYYFEL   79 (116)
T ss_pred             CEEEEEEEecCCCccEEEEEEECCCCCCCceEEEEEEee--------eCCceeEEEEEEecCCcEEEEEEEE
Confidence            456666643   3678888655443  22 246887641        1112346999999888999999999

Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of

>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional

Probab=81.95  E-value=4.8  Score=47.01  Aligned_cols=56  Identities=25%  Similarity=0.388  Sum_probs=42.8

Q ss_pred             EEEEEEeecC-CceEEEEeeeCCCccc----cccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEcCee
Q 016838          290 EVVEIQYSGD-GEIVEVAGSFNGWHHR----IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQW  359 (381)
Q Consensus       290 k~VTF~W~g~-AkeVeVaGSFNnW~~~----IpM~Kd~~~~~~a~~~skesGvFsttL~-LpPG~YEYKFIVDGeW  359 (381)
                      ..|+|+...+ |+.|.|+ .|+.|...    ++|..            +..|+|.+.+. +.+|. .|+|.|+|.|
T Consensus        23 ~gv~F~v~ap~A~~V~L~-lf~~~~~~~~~~~~l~~------------~~g~vW~~~i~~~~~g~-~Ygyrv~g~~   84 (1221)
T PRK14510         23 GGVNLALFSGAAERVEFC-LFDLWGVREEARIKLPG------------RTGDVWHGFIVGVGPGA-RYGNRQEGPG   84 (1221)
T ss_pred             CeEEEEEECCCCCEEEEE-EEECCCCCeeEEEECCC------------CcCCEEEEEEccCCCCc-EEEEEeccCC
Confidence            4689977665 9999997 89988643    45543            36799999875 78887 6999999854

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	381
1z0n_A	96	5'-AMP-activated protein kinase, beta-1 subunit; b	4e-19
2qlv_B	252	Protein SIP2, protein SPM2; heterotrimer, ATP-bind	6e-19
3nme_A	294	Ptpkis1 protein, SEX4 glucan phosphatase; dual spe	5e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
4aee_A	696	Alpha amylase, catalytic region; hydrolase, hypert	8e-05

>1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A Length = 96

 Score = 80.7 bits (199), Expect = 4e-19
 Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 15/101 (14%)

Query: 281 AAEESLSGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWST 340
             E++ +       +++G G+ V ++GSFN W  ++ M              R    +  
Sbjct: 2   VNEKAPAQARPTVFRWTGGGKEVYLSGSFNNWS-KLPMT-------------RSQNNFVA 47

Query: 341 VLWLYPGTYEIKFIVDGQWKVDPQRESVTKG-GICNNILRV 380
           +L L  G ++ KF VDGQW  DP    VT   G  NNI++V
Sbjct: 48  ILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQV 88

>2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} SCOP: b.1.18.21 d.353.1.1 Length = 252

 Score = 84.7 bits (208), Expect = 6e-19
 Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 11/90 (12%)

Query: 292 VEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEI 351
           VEI++   G  V V GSF  W   I + P              +  +   L L PGT+  
Sbjct: 6   VEIRWQQGGSKVYVTGSFTKWRKMIGLIPDS----------DNNGSFHVKLRLLPGTHRF 55

Query: 352 KFIVDGQWKVDPQRESVT-KGGICNNILRV 380
           +FIVD + +V     + T + G   N + V
Sbjct: 56  RFIVDNELRVSDFLPTATDQMGNFVNYIEV 85

>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana} Length = 294

 Score = 68.3 bits (166), Expect = 5e-13
 Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 13/91 (14%)

Query: 293 EIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIK 352
                     VE++G   GW  RI +              + +  W     L  G +E K
Sbjct: 174 LTLKDKGFSRVEISGLDIGWGQRIPL-----------TLGKGTGFWILKRELPEGQFEYK 222

Query: 353 FIVDGQWKVDPQRESVT--KGGICNNILRVI 381
           +I+DG+W  +     +   K G  NN  +V+
Sbjct: 223 YIIDGEWTHNEAEPFIGPNKDGHTNNYAKVV 253

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 4e-06
 Identities = 60/373 (16%), Positives = 113/373 (30%), Gaps = 125/373 (33%)

Query: 62  EELYNDLREFLSTVGLSESHVPSMK-ELSAHGRDDLAN---------IVRRRGYKFIRQL 111
           EE+     +FL +   +E   PSM   +    RD L N         + R + Y  +RQ 
Sbjct: 84  EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA 143

Query: 112 L------------------KSS------------TKPGFNGF---VAEKSLAESL----- 133
           L                  K+              K  F  F   +   +  E++     
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203

Query: 134 -----SDPSFVGEVSPNLNGHYEKADMEEKVANFIQNGD----LDIIED-------RAM- 176
                 DP++      + N       ++ ++   +++      L ++ +        A  
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN 263

Query: 177 ----ILNGSALTS--KQIASF---ATVNHPLSEDHLGTGVEGADFDSSEARRRENQLEID 227
               IL    LT+  KQ+  F   AT  H   + H  T          E         + 
Sbjct: 264 LSCKIL----LTTRFKQVTDFLSAATTTHISLDHHSMT------LTPDEV------KSL- 306

Query: 228 HLKFMLHQKEMELSRLKEQIEKEK-LALSVLQTKAVTEINKAE---KLISDKDEELIAAE 283
            LK++    +     L  ++       LS++       +   +    +  DK   +I  E
Sbjct: 307 LLKYL----DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII--E 360

Query: 284 ESLSGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLW 343
            SL+ LE  E +                     ++   P S+ I         L  +++W
Sbjct: 361 SSLNVLEPAEYR-----------------KMFDRLSVFPPSAHIPT-----ILL--SLIW 396

Query: 344 LYPGTYEIKFIVD 356
                 ++  +V+
Sbjct: 397 FDVIKSDVMVVVN 409

>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus} Length = 696

 Score = 43.6 bits (103), Expect = 8e-05
 Identities = 11/80 (13%), Positives = 25/80 (31%), Gaps = 14/80 (17%)

Query: 292 VEIQYSGDGEIVEVAGSFNGWH-HRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYE 350
               +    + + + G F   +   +K+              +        L L+PG Y 
Sbjct: 22  FTRHWPQYAKNIYLIGEFTSLYPGFVKL-------------RKIEEQGIVYLKLWPGEYG 68

Query: 351 IKFIVDGQWKVDPQRESVTK 370
             F +D  ++     ++  K
Sbjct: 69  YGFQIDNDFENVLDPDNEEK 88

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	381
1z0n_A	96	5'-AMP-activated protein kinase, beta-1 subunit; b	99.88
3nme_A	294	Ptpkis1 protein, SEX4 glucan phosphatase; dual spe	99.87
2qlv_B	252	Protein SIP2, protein SPM2; heterotrimer, ATP-bind	99.86
4aee_A	696	Alpha amylase, catalytic region; hydrolase, hypert	99.49
4aef_A	645	Neopullulanase (alpha-amylase II); hydrolase, ther	99.2
2z0b_A	131	GDE5, KIAA1434, putative glycerophosphodiester pho	98.31
3c8d_A	403	Enterochelin esterase; alpha-beta-alpha sandwich,	98.22
1ac0_A	108	Glucoamylase; hydrolase, starch binding domain; HE	97.96
1m7x_A	617	1,4-alpha-glucan branching enzyme; alpha/beta barr	97.67
3k1d_A	722	1,4-alpha-glucan-branching enzyme; mycobacterium t	97.5
3aml_A	755	OS06G0726400 protein; starch-branching, transferas	97.32
1bf2_A	750	Isoamylase; hydrolase, glycosidase, debranching en	96.35
1qho_A	686	Alpha-amylase; glycoside hydrolase, starch degrada	96.19
3vgf_A	558	Malto-oligosyltrehalose trehalohydrolase; alpha/be	96.13
1cyg_A	680	Cyclodextrin glucanotransferase; glycosyltransfera	96.09
2wsk_A	657	Glycogen debranching enzyme; carbohydrate metaboli	95.99
2vn4_A	599	Glucoamylase; hydrolase, carbohydrate binding, gly	95.93
2bhu_A	602	Maltooligosyltrehalose trehalohydrolase; alpha-amy	95.89
2vr5_A	718	Glycogen operon protein GLGX; hydrolase, glycosida	95.85
2laa_A	104	Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Pa	95.71
3bmv_A	683	Cyclomaltodextrin glucanotransferase; glycosidase,	95.52
1d3c_A	686	Cyclodextrin glycosyltransferase; alpha-amylase, p	95.24
2e8y_A	718	AMYX protein, pullulanase; multiple domain, beta-a	94.87
1wzl_A	585	Alpha-amylase II; pullulan, GH-13, alpha-amylase f	94.63
1vem_A	516	Beta-amylase; beta-alpha-barrels, optimum PH, hydr	94.54
2fhf_A	1083	Pullulanase; multiple domain, beta-alpha-barrel, a	94.17
1j0h_A	588	Neopullulanase; beta-alpha-barrels, hydrolase; 1.9	93.98
3m07_A	618	Putative alpha amylase; IDP00968, csgid, structura	93.34
4aio_A	884	Limit dextrinase; hydrolase, pullulanase, glycosid	93.04
2ya0_A	714	Putative alkaline amylopullulanase; hydrolase, gly	93.03
3faw_A	877	Reticulocyte binding protein; TIM barrel, beta bar	92.97
2wan_A	921	Pullulanase; hydrolase, glycoside hydrolase, polys	92.29
1gcy_A	527	Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-b	91.71
1ji1_A	637	Alpha-amylase I; beta/alpha barrel, hydrolase; 1.6	90.01
1ea9_C	583	Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A	89.38
2wan_A	921	Pullulanase; hydrolase, glycoside hydrolase, polys	89.33
2ya1_A	1014	Putative alkaline amylopullulanase; hydrolase, gly	88.27

>1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A

Probab=99.88  E-value=1e-22  Score=165.54  Aligned_cols=81  Identities=35%  Similarity=0.593  Sum_probs=73.5

Q ss_pred             CCcEEEEEEeecCCceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEcCeeecCCCCC
Q 016838          287 SGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRE  366 (381)
Q Consensus       287 sgLk~VTF~W~g~AkeVeVaGSFNnW~~~IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG~YEYKFIVDGeW~~DP~~P  366 (381)
                      ...++|+|+|..+|++|+|+|+||+|+ .++|.++             .|.|++++.|++|.|+|||+|||+|++||.+|
T Consensus         8 ~~~~~v~F~wap~a~~V~v~GdFn~W~-~~~m~~~-------------~g~w~~~v~l~~G~~~YKf~VdG~~~~DP~~~   73 (96)
T 1z0n_A            8 AQARPTVFRWTGGGKEVYLSGSFNNWS-KLPMTRS-------------QNNFVAILDLPEGEHQYKFFVDGQWTHDPSEP   73 (96)
T ss_dssp             --CEEEEEEECSCCSCEEEEEGGGTTC-CEECEEE-------------TTEEEEEEEECSEEEEEEEEETTEEECCTTSC
T ss_pred             CCceEEEEEECCCCcEEEEEEEeCCCc-cccCEEC-------------CCEEEEEEEccCCCEEEEEEECCeEEcCCCCC
Confidence            456899999998899999999999999 7899862             48999999999999999999999999999999


Q ss_pred             eecc-CCccceEEEeC
Q 016838          367 SVTK-GGICNNILRVI  381 (381)
Q Consensus       367 tVtD-~GnvNNVL~V~  381 (381)
                      ++.+ .|+.||+|.|.
T Consensus        74 ~~~d~~G~~Nnvi~V~   89 (96)
T 1z0n_A           74 IVTSQLGTVNNIIQVK   89 (96)
T ss_dssp             EEECTTSCEEEEEEEC
T ss_pred             eEECCCCCEeEEEEEc
Confidence            9987 79999999984

>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana}

Probab=99.87  E-value=1.1e-22  Score=192.14  Aligned_cols=108  Identities=25%  Similarity=0.421  Sum_probs=86.0

Q ss_pred             hhccccccccccchH------HHHHHHhh-cC--CcEEEEEEeec-CCceEEEEeeeCCCccccccCCCCCCCccccccc
Q 016838          263 TEINKAEKLISDKDE------ELIAAEES-LS--GLEVVEIQYSG-DGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRS  332 (381)
Q Consensus       263 ~ei~~a~kLl~eKd~------~Ld~Ae~a-Ls--gLk~VTF~W~g-~AkeVeVaGSFNnW~~~IpM~Kd~~~~~~a~~~s  332 (381)
                      ..+.+|-..+.++++      .+..+... |.  ..++|+|+|.+ +|++|+|+|+||||+..++|.++           
T Consensus       134 ~s~~~A~~~v~~~Rp~~Pn~~~l~~~~~~~L~~~~k~~v~f~~~~~~~~~V~v~GsF~~W~~~~~l~k~-----------  202 (294)
T 3nme_A          134 YKLMEAHKLLMSKRSCFPKLDAIRNATIDILTGLKRKTVTLTLKDKGFSRVEISGLDIGWGQRIPLTLG-----------  202 (294)
T ss_dssp             CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECSSCSCEEEEETTTEEEEEEECEEC-----------
T ss_pred             CCHHHHHHHHHHhCCCCCChhhhhHHHHHhhhccccccceeeeccCCCCEEEEEEeccCCCCcccceEc-----------
Confidence            345556655555554      12222222 33  34899999999 59999999999999988999986           


Q ss_pred             cCCCcEEEEEEeCCeeEEEEEEEcCeeecCCCCCee-cc-CCccceEEEeC
Q 016838          333 RKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESV-TK-GGICNNILRVI  381 (381)
Q Consensus       333 kesGvFsttL~LpPG~YEYKFIVDGeW~~DP~~PtV-tD-~GnvNNVL~V~  381 (381)
                      ..+|.|++++.||||.|+|||+|||+|++||++|.+ .| .|++||+|.|.
T Consensus       203 ~~~g~~~~~~~L~~G~y~YkFiVDG~w~~d~~~~~~~~d~~G~~nn~~~v~  253 (294)
T 3nme_A          203 KGTGFWILKRELPEGQFEYKYIIDGEWTHNEAEPFIGPNKDGHTNNYAKVV  253 (294)
T ss_dssp             TTTCEEEEEEEECSEEEEEEEEETTEEECCTTSCEECSCTTSCCEEEEEEC
T ss_pred             CCCCEEEEEEECCCceEEEEEEECCEEeeCCCCCeeeECCCCCEeEEEEEC
Confidence            247999999999999999999999999999999987 45 79999999984

>2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} SCOP: b.1.18.21 d.353.1.1

Probab=99.86  E-value=4e-22  Score=187.34  Aligned_cols=84  Identities=31%  Similarity=0.438  Sum_probs=77.1

Q ss_pred             CcEEEEEEeecCCceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEcCeeecCCCCCe
Q 016838          288 GLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRES  367 (381)
Q Consensus       288 gLk~VTF~W~g~AkeVeVaGSFNnW~~~IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG~YEYKFIVDGeW~~DP~~Pt  367 (381)
                      .+++|+|+|.++|++|+|+|+|++|++.++|.+..          .++|.|++++.|+||.|+|||+|||+|++||++|+
T Consensus         2 ~~vpv~f~W~~~a~~V~V~GsF~~W~~~~~m~k~~----------~~~G~f~~tv~LppG~y~YKFiVDG~w~~Dp~~p~   71 (252)
T 2qlv_B            2 LMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDS----------DNNGSFHVKLRLLPGTHRFRFIVDNELRVSDFLPT   71 (252)
T ss_dssp             CCEEEEEEECSCCSCEEEEEGGGTTSSCEECEECS----------SSTTCEEEEEEECSEEEEEEEEETTEEECCTTSCE
T ss_pred             CcEEEEEEEeCCCcEEEEEEEeCCCcCcccceecc----------CCCCcEEEEEECCCCEEEEEEEECCEEEeCCCCCE
Confidence            46899999999999999999999999888998731          25799999999999999999999999999999999


Q ss_pred             ecc-CCccceEEEeC
Q 016838          368 VTK-GGICNNILRVI  381 (381)
Q Consensus       368 VtD-~GnvNNVL~V~  381 (381)
                      +.+ .|+.||+|.|.
T Consensus        72 ~~d~~G~~nNvi~V~   86 (252)
T 2qlv_B           72 ATDQMGNFVNYIEVR   86 (252)
T ss_dssp             EBCSSCCCEEEEEEC
T ss_pred             EecCCCcCcceeecc
Confidence            987 79999999984

>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus}

Probab=99.49  E-value=2.7e-14  Score=147.47  Aligned_cols=79  Identities=19%  Similarity=0.230  Sum_probs=67.1

Q ss_pred             CCcEEEEEEeec--CCceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEcCeee--c
Q 016838          287 SGLEVVEIQYSG--DGEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWK--V  361 (381)
Q Consensus       287 sgLk~VTF~W~g--~AkeVeVaGSFNnW~~~-IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG~YEYKFIVDGeW~--~  361 (381)
                      .+..+|+|++..  +|++|+|+||||+|++. .+|.+             .+|.|++++.||||+|+|||+|||+|.  +
T Consensus        15 ~~~~~v~f~~~~~~~~~~v~~~G~Fn~w~~~~~~~~~-------------~~~~~~~~~~L~~g~~~y~f~vdg~~~~~~   81 (696)
T 4aee_A           15 KGRYIVKFTRHWPQYAKNIYLIGEFTSLYPGFVKLRK-------------IEEQGIVYLKLWPGEYGYGFQIDNDFENVL   81 (696)
T ss_dssp             EEEEEEEEEEECCTTCSCEEEEETTSCSSTTSCBCEE-------------ETTEEEEEEEECSEEEEEEEEETTCCSCCC
T ss_pred             CCcEEEEEEEECCCCCcEEEEEEecCCCCCCCcceEe-------------cCCeEEEEEEcCCceEEEEEEECCEEeecC
Confidence            355789999887  58999999999999763 57765             489999999999999999999999999  8


Q ss_pred             CCCCCeec---c-CCccceEE
Q 016838          362 DPQRESVT---K-GGICNNIL  378 (381)
Q Consensus       362 DP~~PtVt---D-~GnvNNVL  378 (381)
                      ||++|...   + .|+.|+|.
T Consensus        82 d~~~~~~~y~~~~~g~~n~~~  102 (696)
T 4aee_A           82 DPDNEEKKCVHTSFFPEYKKC  102 (696)
T ss_dssp             CTTCCCEEEEECSSCTTSEEE
T ss_pred             CCCCCcccccccCCcccccee
Confidence            88888554   3 58899885

>4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus}

Probab=99.20  E-value=2.2e-11  Score=124.32  Aligned_cols=68  Identities=22%  Similarity=0.510  Sum_probs=59.8

Q ss_pred             cEEEEEEeecCCceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEcCeeecCCCCCe
Q 016838          289 LEVVEIQYSGDGEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRES  367 (381)
Q Consensus       289 Lk~VTF~W~g~AkeVeVaGSFNnW~~~-IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG~YEYKFIVDGeW~~DP~~Pt  367 (381)
                      +..|.|.++..|+.|+|+|+||+|.+. .+|++             .+|.|.+++.||||.|+|||+|||+|..||.+|.
T Consensus        16 ~~~~~~~~~~~~~~~yl~G~Fn~w~~~~~~m~~-------------~g~~~~~~v~L~~G~y~Y~f~vdg~~~~dp~n~~   82 (645)
T 4aef_A           16 VAEVEFSLIREGSYAYLLGDFNAFNEGSFRMEQ-------------EGKNWKIKIALPEGVWHYAFSIDGKFVLDPDNPE   82 (645)
T ss_dssp             EEEEEEEEECCSSCEEEEETTTTTCTTSSEEEE-------------CSSEEEEEEEECSEEEEEEEEETTEEECCTTCCC
T ss_pred             EEEEEEecCCCCeEEEEEEcCCCCCCCcccceE-------------cCCEEEEEEEeCCceEEEEEEECCeEecCCCCCC
Confidence            357888899889999999999999864 56764             5689999999999999999999999999999986


Q ss_pred             ec
Q 016838          368 VT  369 (381)
Q Consensus       368 Vt  369 (381)
                      ..
T Consensus        83 ~~   84 (645)
T 4aef_A           83 RR   84 (645)
T ss_dssp             EE
T ss_pred             cc
Confidence            64

>2z0b_A GDE5, KIAA1434, putative glycerophosphodiester phosphodiesterase; CBM20 domain, starch-binding, hydrolase, STR genomics, NPPSFA; 2.00A {Homo sapiens}

Probab=98.31  E-value=1.8e-06  Score=73.60  Aligned_cols=71  Identities=25%  Similarity=0.578  Sum_probs=54.1

Q ss_pred             CCcEEEEEEeec---CCceEEEEee---eCCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE--
Q 016838          287 SGLEVVEIQYSG---DGEIVEVAGS---FNGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV--  355 (381)
Q Consensus       287 sgLk~VTF~W~g---~AkeVeVaGS---FNnW~~~--IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG-~YEYKFIV--  355 (381)
                      +....|+|+...   .++.|+|+|+   +.+|++.  ++|....        .+.....|++++.||+| .+||||+|  
T Consensus         6 ~~~v~V~F~v~~~~~~ge~v~vvGs~~~LG~W~p~~av~L~~~~--------~~~~~~~W~~~v~lp~~~~~eYKyvi~~   77 (131)
T 2z0b_A            6 SGPSQVAFEIRGTLLPGEVFAICGSCDALGNWNPQNAVALLPEN--------DTGESMLWKATIVLSRGVSVQYRYFKGY   77 (131)
T ss_dssp             CCCEEEEEEEECCCCTTCEEEEEESSGGGTTTCGGGCEECEECC--------TTCCSSEEEEEEEECTTCCEEEEEEEEE
T ss_pred             CCeEEEEEEEeeecCCCCEEEEEeCCCcCCCCCccccccccccc--------cCCCCCeEEEEEEcCCCCcEEEEEEEEe
Confidence            345789998876   3799999999   8999974  5786531        12367899999999998 59999999  


Q ss_pred             ------c-C-------eeecCCCC
Q 016838          356 ------D-G-------QWKVDPQR  365 (381)
Q Consensus       356 ------D-G-------eW~~DP~~  365 (381)
                            + |       .|...+.+
T Consensus        78 ~~~~~~~~g~~~v~~~~WE~g~~N  101 (131)
T 2z0b_A           78 FLEPKTIGGPCQVIVHKWETHLQP  101 (131)
T ss_dssp             EECCCC----CEEEEEEECCSSCC
T ss_pred             ecCccccCCccccceeeECCCCCC
Confidence                  5 3       68887744

>3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron aquisition, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.80A {Shigella flexneri 2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A* 3c8h_A 3mga_A*

Probab=98.22  E-value=2.7e-06  Score=82.04  Aligned_cols=80  Identities=21%  Similarity=0.207  Sum_probs=63.7

Q ss_pred             CcEEEEEEeecC-C-------ceEEEEeeeCCCcc------ccccCCCCCCCccccccccCCCcEEEEEEeCCeeE-EEE
Q 016838          288 GLEVVEIQYSGD-G-------EIVEVAGSFNGWHH------RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTY-EIK  352 (381)
Q Consensus       288 gLk~VTF~W~g~-A-------keVeVaGSFNnW~~------~IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG~Y-EYK  352 (381)
                      +.+.|||.|.++ |       ++|+|.  +++|..      ..+|.|.           ...|+|+.++.|++|.| .|.
T Consensus        29 ~~~~vtF~~~~p~a~~~~~~~~~V~~~--~~~~~d~~~~~~~~~m~r~-----------~~~~~W~~t~~l~~~~~~~Y~   95 (403)
T 3c8d_A           29 EMFEVTFWWRDPQGSEEYSTIKRVWVY--ITGVTDHHQNSQPQSMQRI-----------AGTDVWQWTTQLNANWRGSYC   95 (403)
T ss_dssp             SEEEEEEEEECTTCSTTTCCCCEEEEE--ETTTC-------CCBCEEC-----------TTSSEEEEEEEEETTCEEEEE
T ss_pred             CcEEEEEEeeCCCcccccCccceEEEE--CcCCCccccccCccccccC-----------CCCCeEEEEEEECCCcEEEEE
Confidence            457999999987 5       789998  344332      2368773           36899999999999999 999


Q ss_pred             EEEc------------------------CeeecCCCCCeecc-C-CccceEEEe
Q 016838          353 FIVD------------------------GQWKVDPQRESVTK-G-GICNNILRV  380 (381)
Q Consensus       353 FIVD------------------------GeW~~DP~~PtVtD-~-GnvNNVL~V  380 (381)
                      |+||                        |..+.||.||.... . |...|+++|
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~r~~w~~~~~~~~~DP~n~~~~~~~~~~~~s~~~~  149 (403)
T 3c8d_A           96 FIPTERDDIFSAPSPDRLELREGWRKLLPQAIADPLNPQSWKGGLGHAVSALEM  149 (403)
T ss_dssp             EEEESCCSTTCCC--CHHHHHHHHHHHGGGCBCCTTCSSEECCSSSSCEEEEEC
T ss_pred             EEecCcccccccccchHHHHHHHHHHhhcccccCCCCCCCCCCCCCcccccccC
Confidence            9999                        78899999998774 4 777788875

>1ac0_A Glucoamylase; hydrolase, starch binding domain; HET: GLC BGC GLO; NMR {Aspergillus niger} SCOP: b.3.1.1 PDB: 1acz_A* 1kul_A 1kum_A

Probab=97.96  E-value=5.3e-06  Score=67.56  Aligned_cols=75  Identities=27%  Similarity=0.509  Sum_probs=55.9

Q ss_pred             CcEEEEEEeecC---CceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEEc--
Q 016838          288 GLEVVEIQYSGD---GEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIVD--  356 (381)
Q Consensus       288 gLk~VTF~W~g~---AkeVeVaGSF---NnW~~~--IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG-~YEYKFIVD--  356 (381)
                      +...|+|.....   ++.|+|+|+.   .+|++.  ++|....        .+.+++.|++++.||+| .+||||+|.  
T Consensus         5 ~~v~V~F~v~~~t~~Ge~v~vvGs~~~LG~W~~~~a~~l~~~~--------~~~~~~~W~~~v~lp~~~~~eYKy~v~~~   76 (108)
T 1ac0_A            5 TAVAVTFDLTATTTYGENIYLVGSISQLGDWETSDGIALSADK--------YTSSDPLWYVTVTLPAGESFEYKFIRIES   76 (108)
T ss_dssp             CCCCEEEEEECCCCSSCCEECCCSSSTTCSSSGGGSCCBBCSS--------SSSSCSSCEEEECCCSSSCEECCCEECCS
T ss_pred             CeEEEEEEEeeECCCCCEEEEEeCcHHHCCCCHHHCccccccc--------cCCcCCeEEEEEEeCCCCeEEEEEEEEcC
Confidence            446788887663   8999999986   589964  5787531        11256899999999998 599999993  


Q ss_pred             -C--eeecCCCCCeecc
Q 016838          357 -G--QWKVDPQRESVTK  370 (381)
Q Consensus       357 -G--eW~~DP~~PtVtD  370 (381)
                       |  .|..+|+.-....
T Consensus        77 ~g~~~WE~g~nR~~~~p   93 (108)
T 1ac0_A           77 DDSVEWESDPNREYTVP   93 (108)
T ss_dssp             SSCCCCCCSSCCEECCC
T ss_pred             CCCEEeccCCCEEEECC
Confidence             4  5888887765554

>1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich, transferase; 2.30A {Escherichia coli} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A*

Probab=97.67  E-value=0.00012  Score=74.92  Aligned_cols=68  Identities=24%  Similarity=0.357  Sum_probs=53.2

Q ss_pred             EEEEEEeecC-CceEEEEeeeCCCcc-ccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEE---cCee--ec
Q 016838          290 EVVEIQYSGD-GEIVEVAGSFNGWHH-RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIV---DGQW--KV  361 (381)
Q Consensus       290 k~VTF~W~g~-AkeVeVaGSFNnW~~-~IpM~Kd~~~~~~a~~~skesGvFsttL~-LpPG~YEYKFIV---DGeW--~~  361 (381)
                      ..|+|+..++ |+.|.|.|+|++|.. .++|.+.           ...|+|++++. +.+|.+ |+|.|   ||.+  ..
T Consensus        25 ~gv~F~vwAP~A~~V~L~gdfn~~~~~~~~M~~~-----------~~~GvW~~~v~~~~~g~~-Y~f~i~~~~g~~~~~~   92 (617)
T 1m7x_A           25 TGTRFSVWAPNARRVSVVGQFNYWDGRRHPMRLR-----------KESGIWELFIPGAHNGQL-YKYEMIDANGNLRLKS   92 (617)
T ss_dssp             EEEEEEEECSSCSCEEEEEGGGTSCTTTCBCCCC-----------TTTTEEEEEEETCCTTCE-EEEEEECTTSCEEEEC
T ss_pred             CcEEEEEECCCCCEEEEEEEeCCCCCceeEeEEC-----------CCCCEEEEEEcCCCCCCE-EEEEEEcCCCcEEEec
Confidence            5789976665 999999999999975 4688863           25799999997 788875 99999   6775  67


Q ss_pred             CCCCCeec
Q 016838          362 DPQRESVT  369 (381)
Q Consensus       362 DP~~PtVt  369 (381)
                      ||-...+.
T Consensus        93 DPya~~~~  100 (617)
T 1m7x_A           93 DPYAFEAQ  100 (617)
T ss_dssp             CTTCSSEE
T ss_pred             Cccceeec
Confidence            88766544

>3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV, mesophilic human pathogen, RV1326C gene, glycosyl transferase; 2.33A {Mycobacterium tuberculosis}

Probab=97.50  E-value=0.00016  Score=76.67  Aligned_cols=69  Identities=26%  Similarity=0.343  Sum_probs=53.2

Q ss_pred             cEEEEEEeecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEE---cCee--e
Q 016838          289 LEVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIV---DGQW--K  360 (381)
Q Consensus       289 Lk~VTF~W~g~-AkeVeVaGSFNnW~~~-IpM~Kd~~~~~~a~~~skesGvFsttL~-LpPG~YEYKFIV---DGeW--~  360 (381)
                      ..-|+|+..++ |+.|.|+|+||+|+.. .+|.+.           ...|+|.+.+. +.+|. .|||.|   ||+|  +
T Consensus       135 ~~g~~F~vwAP~A~~V~l~gdfn~w~~~~~~m~~~-----------~~~GvW~~~i~~~~~g~-~Y~y~i~~~~g~~~~~  202 (722)
T 3k1d_A          135 VSGVSFAVWAPNAKGVSLIGEFNGWNGHEAPMRVL-----------GPSGVWELFWPDFPCDG-LYKFRVHGADGVVTDR  202 (722)
T ss_dssp             EEEEEEEEECTTCSEEEEEEGGGTTCCCSCBCEEC-----------GGGCEEEEEEETCCTTC-EEEEEEECTTSCEEEE
T ss_pred             CceEEEEEECCCCCEEEEEeecCCCCCCcccCEEc-----------CCCCEEEEEeCCCCCCC-EEEEEEEcCCCcEEEe
Confidence            35688976665 9999999999999864 678763           24699999996 88885 588888   5664  6


Q ss_pred             cCCCCCeec
Q 016838          361 VDPQRESVT  369 (381)
Q Consensus       361 ~DP~~PtVt  369 (381)
                      .||-...+.
T Consensus       203 ~DPya~~~~  211 (722)
T 3k1d_A          203 ADPFAFGTE  211 (722)
T ss_dssp             CCTTCSSBC
T ss_pred             ecccceeec
Confidence            788776554

>3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A

Probab=97.32  E-value=0.00032  Score=74.35  Aligned_cols=65  Identities=18%  Similarity=0.354  Sum_probs=49.8

Q ss_pred             EEEEEeecC-CceEEEEeeeCCCcc-ccccCCCCCCCccccccccCCCcEEEEEE-------eCCeeEEEEEEEcC---e
Q 016838          291 VVEIQYSGD-GEIVEVAGSFNGWHH-RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-------LYPGTYEIKFIVDG---Q  358 (381)
Q Consensus       291 ~VTF~W~g~-AkeVeVaGSFNnW~~-~IpM~Kd~~~~~~a~~~skesGvFsttL~-------LpPG~YEYKFIVDG---e  358 (381)
                      .|+|+..++ |+.|.|+|+||+|.. .++|.+.            ..|+|.+.+.       +++|.+ |||.|+|   .
T Consensus        66 gv~F~vwAP~A~~V~l~gdfn~w~~~~~~m~~~------------~~GvW~~~v~~~~g~~~i~~g~~-Y~y~i~~~~g~  132 (755)
T 3aml_A           66 ATIYREWAPAAQEAQLIGEFNNWNGAKHKMEKD------------KFGIWSIKISHVNGKPAIPHNSK-VKFRFRHGGGA  132 (755)
T ss_dssp             EEEEEEECTTCSEEEEEEGGGTTCCTTCBCEEC------------TTSEEEEEEECBTTBCSSCTTEE-EEEEEECTTCC
T ss_pred             eEEEEEECCCCCEEEEEEecCCCCCceeeceeC------------CCCEEEEEEcccccccCCCCCCE-EEEEEECCCCc
Confidence            688866554 999999999999975 3678763            5799999998       688875 8998864   5


Q ss_pred             e--ecCCCCCee
Q 016838          359 W--KVDPQRESV  368 (381)
Q Consensus       359 W--~~DP~~PtV  368 (381)
                      |  +.||-...+
T Consensus       133 ~~~~~dpya~~~  144 (755)
T 3aml_A          133 WVDRIPAWIRYA  144 (755)
T ss_dssp             CEEECCTTCSCE
T ss_pred             EEecCCcchheE
Confidence            5  347755544

>1bf2_A Isoamylase; hydrolase, glycosidase, debranching enzyme; 2.00A {Pseudomonas amyloderamosa} SCOP: b.1.18.2 b.71.1.1 c.1.8.1

Probab=96.35  E-value=0.0036  Score=65.91  Aligned_cols=55  Identities=9%  Similarity=0.118  Sum_probs=43.5

Q ss_pred             EEEEEeecC-CceEEEEeeeCCCcc-----ccccCCCCCCCccccccccCCCcEEEEEE-eC------CeeEEEEEEEcC
Q 016838          291 VVEIQYSGD-GEIVEVAGSFNGWHH-----RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LY------PGTYEIKFIVDG  357 (381)
Q Consensus       291 ~VTF~W~g~-AkeVeVaGSFNnW~~-----~IpM~Kd~~~~~~a~~~skesGvFsttL~-Lp------PG~YEYKFIVDG  357 (381)
                      .|+|+..++ |+.|.|.+ |++|..     .++|.+.            ..|+|.+.+. +.      +|.|.|+|.|+|
T Consensus        17 ~~~F~vwap~A~~V~l~l-~~~~~~~~~~~~~~m~~~------------~~gvW~~~v~~~~~~~~~~~g~y~Y~y~v~g   83 (750)
T 1bf2_A           17 NITFRVYSSQATRIVLYL-YSAGYGVQESATYTLSPA------------GSGVWAVTVPVSSIKAAGITGAVYYGYRAWG   83 (750)
T ss_dssp             EEEEEEECSSCSEEEEEE-ESSSSSCCCSEEEECEEC------------STTEEEEEEEHHHHHHTTCCSCCEEEEEEEB
T ss_pred             EEEEEEECCCCCEEEEEE-EccCCCCccceEEecccC------------CCCEEEEEECCcccccccCCCCEEEEEEEEe
Confidence            388976655 99999998 987653     3567652            5699999986 66      999999999997


Q ss_pred             e
Q 016838          358 Q  358 (381)
Q Consensus       358 e  358 (381)
                      .
T Consensus        84 ~   84 (750)
T 1bf2_A           84 P   84 (750)
T ss_dssp             T
T ss_pred             e
Confidence            5

>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A*

Probab=96.19  E-value=0.014  Score=60.41  Aligned_cols=70  Identities=21%  Similarity=0.392  Sum_probs=52.8

Q ss_pred             cEEEEEEeec-----CCceEEEEeeeC---CCcc--------cc-ccCCCCCCCccccccccCCCcEEEEEEeCCe-eEE
Q 016838          289 LEVVEIQYSG-----DGEIVEVAGSFN---GWHH--------RI-KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYE  350 (381)
Q Consensus       289 Lk~VTF~W~g-----~AkeVeVaGSFN---nW~~--------~I-pM~Kd~~~~~~a~~~skesGvFsttL~LpPG-~YE  350 (381)
                      ...|+|+...     .++.|+|+|+-.   +|++        .+ +|..            .....|++++.||+| .+|
T Consensus       581 ~v~v~F~v~~~~t~~~G~~l~v~G~~~~LG~W~~~~~~~~~~a~~~l~~------------~~~~~W~~~v~l~~~~~~e  648 (686)
T 1qho_A          581 QTSVVFTVKSAPPTNLGDKIYLTGNIPELGNWSTDTSGAVNNAQGPLLA------------PNYPDWFYVFSVPAGKTIQ  648 (686)
T ss_dssp             EEEEEEEEESCCCCCTTCEEEEEESSGGGTTTCCCCSSCSSCCBCCCBC------------TTTTSEEEEEEEETTCEEE
T ss_pred             eEEEEEEEecccCCCCCCEEEEEeChHHhCCCCCccccchhhhhccccc------------CCCCcEEEEEEeCCCCeEE
Confidence            4678887765     478999999984   8987        23 4432            356899999999998 599


Q ss_pred             EEEEE---cC--eeecCCCCCeecc
Q 016838          351 IKFIV---DG--QWKVDPQRESVTK  370 (381)
Q Consensus       351 YKFIV---DG--eW~~DP~~PtVtD  370 (381)
                      |||+|   +|  .|...|+.-...+
T Consensus       649 yKy~~~~~~~~~~We~~~nr~~~~~  673 (686)
T 1qho_A          649 FKFFIKRADGTIQWENGSNHVATTP  673 (686)
T ss_dssp             EEEEEECTTSCEEECCSSCEEEECC
T ss_pred             EEEEEEcCCCCEEeCCCCCeeEECC
Confidence            99999   34  4888877665554

>3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel, alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A* 3vgh_A* 3vgg_A* 1eha_A

Probab=96.13  E-value=0.0041  Score=62.95  Aligned_cols=61  Identities=13%  Similarity=0.073  Sum_probs=50.1

Q ss_pred             EEEEEeecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEcCe-eecCCCCCe
Q 016838          291 VVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQ-WKVDPQRES  367 (381)
Q Consensus       291 ~VTF~W~g~-AkeVeVaGSFNnW~~~IpM~Kd~~~~~~a~~~skesGvFsttL~-LpPG~YEYKFIVDGe-W~~DP~~Pt  367 (381)
                      .|+|+..++ |+.|.|.|.|+   ..++|.+.            ..|+|.+.+. +.+|. .|+|.|||. ...||....
T Consensus        10 ~~~f~vwap~a~~v~l~~~~~---~~~~m~~~------------~~g~w~~~~~~~~~g~-~Y~~~~~~~~~~~DP~~~~   73 (558)
T 3vgf_A           10 EVIFTLWAPYQKSVKLKVLEK---GLYEMERD------------EKGYFTITLNNVKVRD-RYKYVLDDASEIPDPASRY   73 (558)
T ss_dssp             EEEEEEECTTCSCCEEEETTT---EEEECEEC------------TTCEEEEEESSCCTTC-EEEEECTTSCEECCTTCSC
T ss_pred             cEEEEEECCCCCEEEEEEecC---ceeecccC------------CCCEEEEEECCCCCCC-EEEEEEeCCccccCcchhh
Confidence            578876665 99999999987   56889874            5799999996 88895 699999997 888997654

>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1

Probab=96.09  E-value=0.022  Score=58.78  Aligned_cols=74  Identities=22%  Similarity=0.315  Sum_probs=54.7

Q ss_pred             CcEEEEEEeec----CCceEEEEeeeC---CCccc--c-ccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE-
Q 016838          288 GLEVVEIQYSG----DGEIVEVAGSFN---GWHHR--I-KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV-  355 (381)
Q Consensus       288 gLk~VTF~W~g----~AkeVeVaGSFN---nW~~~--I-pM~Kd~~~~~~a~~~skesGvFsttL~LpPG-~YEYKFIV-  355 (381)
                      +...|+|+...    .++.|+|+|+-.   +|++.  + +|...         .+.....|++++.||.| .+||||++ 
T Consensus       578 ~~v~v~f~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~~l~~~---------~~~~~~~W~~~v~lp~~~~~eyK~v~~  648 (680)
T 1cyg_A          578 DQVSVRFVVNNATTNLGQNIYIVGNVYELGNWDTSKAIGPMFNQ---------VVYSYPTWYIDVSVPEGKTIEFKFIKK  648 (680)
T ss_dssp             CEEEEEEEEESCCCCSSCEEEEEESSGGGBTTCGGGCBCCCBCS---------SSSCTTCEEEEEEEESSCEEEEEEEEE
T ss_pred             CeEEEEEEEeeccCCCCCEEEEEeCcHHhCCCChhhhhhhhccc---------cCCCCCcEEEEEEeCCCCcEEEEEEEE
Confidence            34678888865    389999999875   99874  4 56541         01256899999999988 79999998 


Q ss_pred             --cC--eeecCCCCCeecc
Q 016838          356 --DG--QWKVDPQRESVTK  370 (381)
Q Consensus       356 --DG--eW~~DP~~PtVtD  370 (381)
                        +|  .|...++.-....
T Consensus       649 ~~~~~~~WE~g~Nr~~~~~  667 (680)
T 1cyg_A          649 DSQGNVTWESGSNHVYTTP  667 (680)
T ss_dssp             CTTSCEEECCSSCEEEECC
T ss_pred             eCCCCeEeCCCCCeeEECC
Confidence              34  4887776655554

>2wsk_A Glycogen debranching enzyme; carbohydrate metabolism, hydrolase, glycosidase, ISO-amylase glycosyl hydrolase, glycogen metabolism; 2.25A {Escherichia coli k-12}

Probab=95.99  E-value=0.0088  Score=61.94  Aligned_cols=54  Identities=24%  Similarity=0.334  Sum_probs=43.2

Q ss_pred             EEEEEeecC-CceEEEEeeeCCCc--cccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEcCe
Q 016838          291 VVEIQYSGD-GEIVEVAGSFNGWH--HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQ  358 (381)
Q Consensus       291 ~VTF~W~g~-AkeVeVaGSFNnW~--~~IpM~Kd~~~~~~a~~~skesGvFsttL~-LpPG~YEYKFIVDGe  358 (381)
                      .|+|+..++ |+.|.|.+ |+++.  ..++|.+.            ..|+|.+.+. +.+|.+ |+|.|+|.
T Consensus        20 g~~F~vwap~A~~V~l~~-f~~~~~~~~~~m~~~------------~~g~w~~~v~~~~~g~~-Y~y~v~~~   77 (657)
T 2wsk_A           20 GVNFTLFSAHAERVELCV-FDANGQEHRYDLPGH------------SGDIWHGYLPDARPGLR-YGYRVHGP   77 (657)
T ss_dssp             EEEEEEECSSCSEEEEEE-ECTTCCEEEEECCEE------------ETTEEEEEEETCCTTCE-EEEEEECC
T ss_pred             eEEEEEECCCCCEEEEEE-ECCCCCEEEEeCcCC------------CCCEEEEEECCCCCCCE-EEEEEeee
Confidence            588976655 99999999 98765  35788752            5699999985 788987 99999983

>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A*

Probab=95.93  E-value=0.029  Score=58.24  Aligned_cols=73  Identities=27%  Similarity=0.487  Sum_probs=53.3

Q ss_pred             EEEEEEeec---CCceEEEEeeeC---CCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---cC
Q 016838          290 EVVEIQYSG---DGEIVEVAGSFN---GWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG  357 (381)
Q Consensus       290 k~VTF~W~g---~AkeVeVaGSFN---nW~~~--IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG-~YEYKFIV---DG  357 (381)
                      ..|+|....   .++.|+|+|+-.   +|++.  ++|...        ..+..+..|++++.||+| .+||||+|   +|
T Consensus       497 v~v~F~v~~~t~~Ge~l~vvGs~~~LG~W~~~~a~~L~~~--------~~t~~~~~W~~~v~lp~~~~~eYKyvv~~~~g  568 (599)
T 2vn4_A          497 VAVTFHELVSTQFGQTVKVAGNAAALGNWSTSAAVALDAV--------NYADNHPLWIGTVNLEAGDVVEYKYINVGQDG  568 (599)
T ss_dssp             EEEEEEEECCCCTTCEEEEEESSGGGTTTCTTTSEECBCT--------TCBTTBCEEEEEEEEETTCEEEEEEEEECTTC
T ss_pred             EEEEEEEeEEcCCCCEEEEEecccCCCCcChhheeecccc--------cCCCCCCcEEEEEEcCCCCcEEEEEEEECCCC
Confidence            568888766   389999999874   89863  678753        111235799999999998 59999999   34


Q ss_pred             --eeecCCCCCeecc
Q 016838          358 --QWKVDPQRESVTK  370 (381)
Q Consensus       358 --eW~~DP~~PtVtD  370 (381)
                        .|...|+.-...+
T Consensus       569 ~~~WE~g~NR~~~~p  583 (599)
T 2vn4_A          569 SVTWESDPNHTYTVP  583 (599)
T ss_dssp             CEEECCSSCEEEECC
T ss_pred             ceEeCCCCCEEEecC
Confidence              3877776655544

>2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A*

Probab=95.89  E-value=0.0082  Score=61.64  Aligned_cols=62  Identities=19%  Similarity=0.201  Sum_probs=49.1

Q ss_pred             EEEEEeecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEcCeeecCCCCCeec
Q 016838          291 VVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVT  369 (381)
Q Consensus       291 ~VTF~W~g~-AkeVeVaGSFNnW~~~IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG~YEYKFIVDGeW~~DP~~PtVt  369 (381)
                      .|+|+..++ |+.|.|.|.    ...++|.+.            ..|+|.+.+.+.+|.+ |+|.|||....||....+.
T Consensus        35 ~~~f~vwap~a~~v~l~~~----~~~~~m~~~------------~~g~w~~~~~~~~g~~-Y~~~v~g~~~~DPya~~~~   97 (602)
T 2bhu_A           35 GTRFRLWTSTARTVAVRVN----GTEHVMTSL------------GGGIYELELPVGPGAR-YLFVLDGVPTPDPYARFLP   97 (602)
T ss_dssp             CEEEEEECSSCSSEEEEET----TEEEECEEE------------ETTEEEEEESCCTTCE-EEEEETTEEECCTTCSCCT
T ss_pred             eEEEEEECCCCCEEEEEEc----CCEEeCeeC------------CCcEEEEEEECCCCcE-EEEEECCeEecCCCccccC
Confidence            688866555 999999994    245789763            5799999999889986 9999999777888776543

>2vr5_A Glycogen operon protein GLGX; hydrolase, glycosidase, glycosyl hydrolase, glycogen debraching; HET: GLC A16; 2.8A {Sulfolobus solfataricus} PDB: 2vnc_A* 2vuy_A

Probab=95.85  E-value=0.011  Score=61.91  Aligned_cols=55  Identities=20%  Similarity=0.318  Sum_probs=42.9

Q ss_pred             EEEEEeecC-CceEEEEeeeCCCc-----cccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEcCee
Q 016838          291 VVEIQYSGD-GEIVEVAGSFNGWH-----HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQW  359 (381)
Q Consensus       291 ~VTF~W~g~-AkeVeVaGSFNnW~-----~~IpM~Kd~~~~~~a~~~skesGvFsttL~-LpPG~YEYKFIVDGeW  359 (381)
                      .|+|+..++ |+.|.|.+ |+.+.     ..++|.+.            ..|+|.+.+. +.+|.+ |+|.|+|.|
T Consensus        30 g~~F~vwap~A~~V~l~l-f~~~~~~~~~~~~~m~~~------------~~gvw~~~v~~~~~g~~-Y~y~v~g~~   91 (718)
T 2vr5_A           30 GVNFSLFSENAEKVELLL-YSLTNQKYPKEIIEVKNK------------TGDIWHVFVPGLRPGQL-YAYRVYGPY   91 (718)
T ss_dssp             EEEEEEECSSCSEEEEEE-CCSSCCSSCSEEEEECEE------------SSSEEEEEEETCCTTCE-EEEEEECCE
T ss_pred             eEEEEEECCCCCEEEEEE-EcCCCCCCcceEEeCccC------------CCCEEEEEeCCCCCCCE-EEEEEeeec
Confidence            588976655 99999999 87654     24678752            5799999985 789987 999999853

>2laa_A Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Paenibacillus polymyxa} PDB: 2lab_A

Probab=95.71  E-value=0.023  Score=47.41  Aligned_cols=67  Identities=16%  Similarity=0.223  Sum_probs=51.2

Q ss_pred             EEEEEEeecCCceEEEEeeeC--CCccc--cccCCCCCCCccccccccCCCcE-EEEEEeCCe-eEEEEEEEcCe--eec
Q 016838          290 EVVEIQYSGDGEIVEVAGSFN--GWHHR--IKMDPLPSSSIIEPIRSRKSRLW-STVLWLYPG-TYEIKFIVDGQ--WKV  361 (381)
Q Consensus       290 k~VTF~W~g~AkeVeVaGSFN--nW~~~--IpM~Kd~~~~~~a~~~skesGvF-sttL~LpPG-~YEYKFIVDGe--W~~  361 (381)
                      ..|+|.|..++++|+|...+.  +|...  ++|.+.            .-..| +.++.|+.| .++|+|. ||.  |-.
T Consensus         5 ~~vtiyY~~g~~~vylHyg~~~g~Wt~~~~v~M~~~------------~~~gw~~~TI~l~~g~~~~~~F~-dG~~~WDN   71 (104)
T 2laa_A            5 NKVTIYYKKGFNSPYIHYRPAGGSWTAAPGVKMQDA------------EISGYAKITVDIGSASQLEAAFN-DGNNNWDS   71 (104)
T ss_dssp             CEEEEEEECSSSSCEEEEEETTSCCCSSSCEECEEE------------TTTTEEEEEEECTTCSCEEEEEE-CSSSCEES
T ss_pred             CEEEEEEcCCCCcEEEEEcCCCCCCCcCCccccccc------------cCCCeEEEEEECCCCCEEEEEEe-CCCCcCcC
Confidence            578899988899999999984  89874  578652            21247 699999976 8999995 874  998


Q ss_pred             CCCCCeec
Q 016838          362 DPQRESVT  369 (381)
Q Consensus       362 DP~~PtVt  369 (381)
                      ++..-+..
T Consensus        72 n~g~Nyt~   79 (104)
T 2laa_A           72 NNTKNYSF   79 (104)
T ss_dssp             TTTSCEEE
T ss_pred             CCCccEEe
Confidence            87765443

>3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas; 1.60A {Thermoanaerobacterium thermosulfurigenorganism_taxid} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A

Probab=95.52  E-value=0.029  Score=58.04  Aligned_cols=73  Identities=21%  Similarity=0.288  Sum_probs=53.0

Q ss_pred             cEEEEEEeec----CCceEEEEeeeC---CCccc--c-ccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEEcC
Q 016838          289 LEVVEIQYSG----DGEIVEVAGSFN---GWHHR--I-KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIVDG  357 (381)
Q Consensus       289 Lk~VTF~W~g----~AkeVeVaGSFN---nW~~~--I-pM~Kd~~~~~~a~~~skesGvFsttL~LpPG-~YEYKFIVDG  357 (381)
                      ...|+|+...    .++.|+|+|+-.   +|++.  + +|...         .+.....|++++.||+| .+||||++=.
T Consensus       583 ~v~v~f~v~~~~~~~g~~v~v~G~~~~LG~W~~~~a~~~l~~~---------~~~~~~~W~~~v~lp~~~~~eyK~~~~~  653 (683)
T 3bmv_A          583 QICVRFVVNNASTVYGENVYLTGNVAELGNWDTSKAIGPMFNQ---------VVYQYPTWYYDVSVPAGTTIQFKFIKKN  653 (683)
T ss_dssp             EEEEEEEEESCCCCTTCEEEEEESSGGGTTTCGGGCBCSCBCS---------SSSCTTSEEEEEEEETTCEEEEEEEEES
T ss_pred             eEEEEEEEEeccCCCCCEEEEEeCcHHhCCCChhhhhhhhccc---------CCCCCCcEEEEEEeCCCCcEEEEEEEEc
Confidence            4678888865    389999999885   99863  5 66541         01256899999999988 7999999831


Q ss_pred             ----eeecCCCCCeecc
Q 016838          358 ----QWKVDPQRESVTK  370 (381)
Q Consensus       358 ----eW~~DP~~PtVtD  370 (381)
                          .|...++.-...+
T Consensus       654 ~~~~~WE~g~Nr~~~~~  670 (683)
T 3bmv_A          654 GNTITWEGGSNHTYTVP  670 (683)
T ss_dssp             SSCCEECCSSCEEEECC
T ss_pred             CCceEecCCCCeeEECC
Confidence                4766665544444

>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ...

Probab=95.24  E-value=0.04  Score=56.98  Aligned_cols=73  Identities=21%  Similarity=0.281  Sum_probs=52.3

Q ss_pred             cEEEEEEeec----CCceEEEEeeeC---CCccc--c-ccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEEc-
Q 016838          289 LEVVEIQYSG----DGEIVEVAGSFN---GWHHR--I-KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIVD-  356 (381)
Q Consensus       289 Lk~VTF~W~g----~AkeVeVaGSFN---nW~~~--I-pM~Kd~~~~~~a~~~skesGvFsttL~LpPG-~YEYKFIVD-  356 (381)
                      ...|+|+...    .++.|+|+|+-.   +|++.  + +|...         .+.....|++++.||.| .+||||++= 
T Consensus       586 ~v~v~f~v~~~~~~~g~~~~v~G~~~~LG~W~~~~a~~~l~~~---------~~~~~~~W~~~v~lp~~~~~eyK~~~~~  656 (686)
T 1d3c_A          586 QVSVRFVVNNATTALGQNVYLTGSVSELGNWDPAKAIGPMYNQ---------VVYQYPNWYYDVSVPAGKTIEFKFLKKQ  656 (686)
T ss_dssp             EEEEEEEEECCCCCTTCEEEEEESSGGGTTTCGGGCBCCCBCS---------SSSCTTCEEEEEEEETTCEEEEEEEEEE
T ss_pred             eEEEEEEEeeccCCCCCEEEEEeCcHHhCCCChhhhhhhhccc---------cCCCCCeEEEEEEeCCCCcEEEEEEEEc
Confidence            4678888865    389999999875   99874  4 56541         01256899999999988 799999982 


Q ss_pred             -C--eeecCCCCCeecc
Q 016838          357 -G--QWKVDPQRESVTK  370 (381)
Q Consensus       357 -G--eW~~DP~~PtVtD  370 (381)
                       +  .|...++.-...+
T Consensus       657 ~~~~~WE~g~Nr~~~~~  673 (686)
T 1d3c_A          657 GSTVTWEGGSNHTFTAP  673 (686)
T ss_dssp             TTEEEECCSSCEEEECC
T ss_pred             CCceEecCCCCeEEECC
Confidence             2  3666665544443

>2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, HY; 2.11A {Bacillus subtilis} PDB: 2e8z_A* 2e9b_A*

Probab=94.87  E-value=0.034  Score=58.08  Aligned_cols=66  Identities=18%  Similarity=0.201  Sum_probs=48.8

Q ss_pred             EEEEEeecC-CceEEEEeeeCCCcc-ccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEc--Cee--ecCC
Q 016838          291 VVEIQYSGD-GEIVEVAGSFNGWHH-RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD--GQW--KVDP  363 (381)
Q Consensus       291 ~VTF~W~g~-AkeVeVaGSFNnW~~-~IpM~Kd~~~~~~a~~~skesGvFsttL~-LpPG~YEYKFIVD--GeW--~~DP  363 (381)
                      .|+|+..++ |+.|.|.+.|++|.. .++|.+.            ..|+|.+.+. +.+|. .|+|.|+  |.|  ..||
T Consensus       114 ~~~f~vwap~a~~V~l~~~~~~~~~~~~~m~~~------------~~g~w~~~v~~~~~g~-~Y~f~v~~~g~~~~~~DP  180 (718)
T 2e8y_A          114 HTVFKVWAPAATSAAVKLSHPNKSGRTFQMTRL------------EKGVYAVTVTGDLHGY-EYLFCICNNSEWMETVDQ  180 (718)
T ss_dssp             EEEEEEECTTCSEEEEEEECTTSCCEEEECEEC------------GGGEEEEEEESCCTTC-EEEEEEEETTEEEEECCT
T ss_pred             cEEEEEECCCCCEEEEEEEcCCCcceEEeCccC------------CCCEEEEEECCCCCCC-eEEEEEEeCCeEEEecCC
Confidence            688976665 999999999998864 4789864            4699999987 46663 4667665  764  5688


Q ss_pred             CCCeec
Q 016838          364 QRESVT  369 (381)
Q Consensus       364 ~~PtVt  369 (381)
                      ....+.
T Consensus       181 ya~~~~  186 (718)
T 2e8y_A          181 YAKAVT  186 (718)
T ss_dssp             TCSSBC
T ss_pred             cccccc
Confidence            776544

>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A

Probab=94.63  E-value=0.042  Score=55.66  Aligned_cols=59  Identities=12%  Similarity=0.044  Sum_probs=42.6

Q ss_pred             EEEEEE-eecCCceEEE-EeeeCCCcc----ccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEc
Q 016838          290 EVVEIQ-YSGDGEIVEV-AGSFNGWHH----RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVD  356 (381)
Q Consensus       290 k~VTF~-W~g~AkeVeV-aGSFNnW~~----~IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG~YEYKFIVD  356 (381)
                      ..+.|+ |...+++|.| .|+|++|+.    .++|.+..        .+...|+|++++......+.|||.|.
T Consensus        23 ~~i~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~~m~~~~--------~~~~~~~w~~~i~~~~~~~~Y~f~i~   87 (585)
T 1wzl_A           23 LRVRLRAKKGDVVRCEVLYADRYASPEEELAHALAGKAG--------SDERFDYFEALLECSTKRVKYVFLLT   87 (585)
T ss_dssp             EEEEEEEETTTCSEEEEEEECTTCCTTSCCEEEECEEEE--------ECSSEEEEEEEEECTTSCEEEEEEEE
T ss_pred             EEEEEEECCCCccEEEEEECCCcCCCCCceEEEEEEEee--------cCCCEEEEEEEEECCCCeEEEEEEEE
Confidence            455553 3446999999 799999975    46887631        11224679999998777899999995

>1vem_A Beta-amylase; beta-alpha-barrels, optimum PH, hydrolase; HET: GLC; 1.85A {Bacillus cereus} SCOP: b.3.1.1 c.1.8.1 PDB: 1b90_A* 1j0y_A* 1j0z_A* 1j10_A* 1b9z_A* 1j12_A* 1j18_A* 1j11_A* 5bca_A 1veo_A* 1itc_A* 1ven_A* 1vep_A* 1cqy_A

Probab=94.54  E-value=0.075  Score=54.27  Aligned_cols=74  Identities=20%  Similarity=0.282  Sum_probs=52.3

Q ss_pred             cCC-cEEEEEEeec----CCceEEEEeeeC---CCccc---cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEE
Q 016838          286 LSG-LEVVEIQYSG----DGEIVEVAGSFN---GWHHR---IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKF  353 (381)
Q Consensus       286 Lsg-Lk~VTF~W~g----~AkeVeVaGSFN---nW~~~---IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG-~YEYKF  353 (381)
                      +++ ...|+|....    .|++|+|+|+-.   +|++.   ++|...           ..++.|++++.||+| .+||||
T Consensus       415 Vt~~~v~V~F~v~~~~t~~Ge~v~vvGs~~eLG~W~~~~a~~~l~~~-----------~~p~~W~~~v~lp~~~~~eYKy  483 (516)
T 1vem_A          415 LGVTPVMQTIVVKNVPTTIGDTVYITGNRAELGSWDTKQYPIQLYYD-----------SHSNDWRGNVVLPAERNIEFKA  483 (516)
T ss_dssp             TSCCEEEEEEEEESCCCCTTCEEEEEESSGGGTTTCSSSSCEECEEE-----------TTTTEEEEEEEEETTCCEEEEE
T ss_pred             cccCccceEEEEeeccCCCCCEEEEEeChhhhCCCChhhhceecccC-----------CCCCEEEEEEEECCCCcEEEEE
Confidence            444 4788898764    389999999884   89874   245421           234599999999988 599999


Q ss_pred             EE-c--C---eeecCCCCCeecc
Q 016838          354 IV-D--G---QWKVDPQRESVTK  370 (381)
Q Consensus       354 IV-D--G---eW~~DP~~PtVtD  370 (381)
                      +| |  |   .|...++.-...+
T Consensus       484 v~~~~~g~v~~WE~g~NR~~~~p  506 (516)
T 1vem_A          484 FIKSKDGTVKSWQTIQQSWNPVP  506 (516)
T ss_dssp             EEECTTSCEEEECSSCEEESSCC
T ss_pred             EEEeCCCCeeEEeCCCCEEEecC
Confidence            98 2  3   4777665544443

>2fhf_A Pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, complex with maltotetraose, hydrolase; HET: GLC; 1.65A {Klebsiella aerogenes} SCOP: b.1.18.2 b.1.18.2 b.3.1.3 b.71.1.1 c.1.8.1 PDB: 2fh6_A* 2fh8_A* 2fhb_A* 2fhc_A* 2fgz_A*

Probab=94.17  E-value=0.048  Score=60.37  Aligned_cols=67  Identities=18%  Similarity=0.105  Sum_probs=50.3

Q ss_pred             EEEEEeecC-CceEEEEe-eeCCCcc-ccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEc------Ce--
Q 016838          291 VVEIQYSGD-GEIVEVAG-SFNGWHH-RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD------GQ--  358 (381)
Q Consensus       291 ~VTF~W~g~-AkeVeVaG-SFNnW~~-~IpM~Kd~~~~~~a~~~skesGvFsttL~-LpPG~YEYKFIVD------Ge--  358 (381)
                      .|+|+..++ |+.|.|.+ +|++|.. .++|.+.           ...|+|.+.+. +.+|.| |+|.|+      |.  
T Consensus       305 gv~F~vwAP~A~~V~L~l~d~~~~~~~~~~m~~~-----------~~~GvW~~~v~~~~~G~~-Y~y~v~~~~p~~g~~~  372 (1083)
T 2fhf_A          305 GVTFRVWAPTAQQVELVIYSADKKVIASHPMTRD-----------SASGAWSWQGGSDLKGAF-YRYAMTVYHPQSRKVE  372 (1083)
T ss_dssp             EEEEEEECTTCSEEEEEEECTTCCEEEEEECEEC-----------TTTCEEEEEECGGGTTCE-EEEEEEEEETTTTEEE
T ss_pred             eEEEEEECCCCCEEEEEEEcCCCCccceEECeEC-----------CCCCEEEEEECCCCCCCE-EEEEEEeecCCCCccc
Confidence            588976665 99999999 8899975 4688753           25699999985 788876 888885      43  


Q ss_pred             --eecCCCCCeec
Q 016838          359 --WKVDPQRESVT  369 (381)
Q Consensus       359 --W~~DP~~PtVt  369 (381)
                        ...||....+.
T Consensus       373 ~~~~~DPYa~~~~  385 (1083)
T 2fhf_A          373 QYEVTDPYAHSLS  385 (1083)
T ss_dssp             EEEECCTTCSCBC
T ss_pred             cceecCCccceec
Confidence              47788776554

>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*

Probab=93.98  E-value=0.04  Score=55.88  Aligned_cols=60  Identities=13%  Similarity=0.159  Sum_probs=43.2

Q ss_pred             cEEEEEE-eecCCceEEE-EeeeCCCcc------ccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEc
Q 016838          289 LEVVEIQ-YSGDGEIVEV-AGSFNGWHH------RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVD  356 (381)
Q Consensus       289 Lk~VTF~-W~g~AkeVeV-aGSFNnW~~------~IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG~YEYKFIVD  356 (381)
                      ..++.|+ |...+++|.| .|+|++|+.      .++|.+..        .+...|+|++++......+.|+|.|+
T Consensus        22 ~~~i~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~~~~m~~~~--------~~~~~~~w~~~v~~~~~~~~Y~f~i~   89 (588)
T 1j0h_A           22 TLHLRLRTKKDDIDRVELLHGDPYDWQNGAWQFQMMPMRKTG--------SDELFDYWFAEVKPPYRRLRYGFVLY   89 (588)
T ss_dssp             CEEEEEEEETTTCSEEEEEEECTTCEETTEECCEEEECEEEE--------ECSSEEEEEEEECCTTSCEEEEEEEE
T ss_pred             EEEEEEEECCCCccEEEEEECCCCCccccccceEEEEeEEee--------cCCCeEEEEEEEECCCcEEEEEEEEE
Confidence            3566665 3446999999 699999964      47888641        11124679999988777889999885

>3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp}

Probab=93.34  E-value=0.12  Score=53.47  Aligned_cols=62  Identities=19%  Similarity=0.232  Sum_probs=46.9

Q ss_pred             EEEEEeecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEE-EeCCeeEEEEEEEc-CeeecCCCCCe
Q 016838          291 VVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVL-WLYPGTYEIKFIVD-GQWKVDPQRES  367 (381)
Q Consensus       291 ~VTF~W~g~-AkeVeVaGSFNnW~~~IpM~Kd~~~~~~a~~~skesGvFsttL-~LpPG~YEYKFIVD-GeW~~DP~~Pt  367 (381)
                      .|.|+..++ |+.|.|++   +|. .++|.+.            ..|.|.+.+ .+.+|. .|+|.|+ |....||....
T Consensus        43 ~~~F~vwap~a~~v~l~~---~~~-~~~m~~~------------~~g~~~~~~~~~~~g~-~Y~y~v~~~~~~~DP~a~~  105 (618)
T 3m07_A           43 VVRFRLWATGQQKVMLRL---AGK-DQEMQAN------------GDGWFTLDVAGVTPGT-EYNFVLSDGMVVPDPASRA  105 (618)
T ss_dssp             EEEEEEECTTCSCEEEEE---TTE-EEECEEC------------STTEEEEEEETCCTTC-EEEEEETTSCEECCTTCSC
T ss_pred             cEEEEEECCCCCEEEEEE---CCC-cccCeec------------CCEEEEEEeCCCCCCC-EEEEEEeCCeEecccccee
Confidence            578976665 99999998   343 4789864            568999988 478886 5899995 56888998765


Q ss_pred             ec
Q 016838          368 VT  369 (381)
Q Consensus       368 Vt  369 (381)
                      ..
T Consensus       106 ~~  107 (618)
T 3m07_A          106 QK  107 (618)
T ss_dssp             BS
T ss_pred             ee
Confidence            44

>4aio_A Limit dextrinase; hydrolase, pullulanase, glycoside hydrolase family 13; 1.90A {Hordeum vulgare} PDB: 2x4c_A* 2y4s_A* 2y5e_A* 2x4b_A

Probab=93.04  E-value=0.11  Score=53.90  Aligned_cols=66  Identities=17%  Similarity=0.081  Sum_probs=45.4

Q ss_pred             EEEEEeecC-CceEEEEeeeCCCcccc--ccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEcCe--------
Q 016838          291 VVEIQYSGD-GEIVEVAGSFNGWHHRI--KMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQ--------  358 (381)
Q Consensus       291 ~VTF~W~g~-AkeVeVaGSFNnW~~~I--pM~Kd~~~~~~a~~~skesGvFsttL~-LpPG~YEYKFIVDGe--------  358 (381)
                      .|+|+..++ |+.|.|++-+++|....  .|.+            ...|+|++.+. +.+|.| |+|.|+|.        
T Consensus       137 g~~F~vwAp~A~~V~l~l~~~~~~~~~~~~~~~------------~~~g~W~~~~~~~~~g~~-Y~y~v~~~~~~~~~~~  203 (884)
T 4aio_A          137 SVSLHLWAPTAQGVSVCFFDGPAGPALETVQLK------------ESNGVWSVTGPREWENRY-YLYEVDVYHPTKAQVL  203 (884)
T ss_dssp             EEEEEEECTTCSEEEEEEESTTTSCEEEEEECE------------EETTEEEEEEEGGGTTCE-EEEEEEEEETTTTEEE
T ss_pred             EEEEEEECCCCCEEEEEEEeCCCCCeeeeeeec------------CCCCEEEEEECCCCCCCE-EEEEEeCCCCCccccc
Confidence            589976555 99999999656665543  2322            36799999996 677754 88889752        


Q ss_pred             --eecCCCCCeec
Q 016838          359 --WKVDPQRESVT  369 (381)
Q Consensus       359 --W~~DP~~PtVt  369 (381)
                        ...||....+.
T Consensus       204 ~~~~~DPya~~~~  216 (884)
T 4aio_A          204 KCLAGDPYARSLS  216 (884)
T ss_dssp             EEEECCTTCSEES
T ss_pred             CccccCCCeeeec
Confidence              35688665443

>2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; 1.85A {Streptococcus pneumoniae} PDB: 2ya2_A*

Probab=93.03  E-value=0.13  Score=53.81  Aligned_cols=65  Identities=18%  Similarity=0.309  Sum_probs=47.1

Q ss_pred             EEEEeecC-CceEEEEe-eeCCCcc---ccccCCCCCCCccccccccCCCcEEEEEEe--CCe-----eEEEEEEEc--C
Q 016838          292 VEIQYSGD-GEIVEVAG-SFNGWHH---RIKMDPLPSSSIIEPIRSRKSRLWSTVLWL--YPG-----TYEIKFIVD--G  357 (381)
Q Consensus       292 VTF~W~g~-AkeVeVaG-SFNnW~~---~IpM~Kd~~~~~~a~~~skesGvFsttL~L--pPG-----~YEYKFIVD--G  357 (381)
                      |.|+..++ |+.|.|.+ +|++|..   .++|.+.            ..|+|.+.+.-  .+|     -+.|+|.|+  |
T Consensus        26 v~F~vwap~A~~V~l~l~~~~~~~~~~~~~~m~~~------------~~gvW~~~v~~~~~~g~~~~~g~~Y~y~v~~~~   93 (714)
T 2ya0_A           26 VDLTLWSPSADKVSVVVYDKNDPDKVVGTVALEKG------------ERGTWKQTLDSTNKLGITDFTGYYYQYQIERQG   93 (714)
T ss_dssp             EEEEEECTTCSEEEEEEECSSCTTSEEEEEECEEC------------GGGEEEEEECTTCSSSCSCCTTCEEEEEEEETT
T ss_pred             EEEEEECCCCCEEEEEEEeCCCCCccceEEeCccC------------CCCEEEEEECCccCCCccccCCcEEEEEEEeCC
Confidence            88976655 99999999 8888864   4788763            56999998863  134     267888886  6


Q ss_pred             e--eecCCCCCee
Q 016838          358 Q--WKVDPQRESV  368 (381)
Q Consensus       358 e--W~~DP~~PtV  368 (381)
                      .  -..||....+
T Consensus        94 ~~~~~~DPya~~~  106 (714)
T 2ya0_A           94 KTVLALDPYAKSL  106 (714)
T ss_dssp             EEEEECCTTCSEE
T ss_pred             ceEEecCCceeee
Confidence            4  4579976543

>3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase, cell WALL, peptidoglycan-anchor, secreted; 2.10A {Streptococcus agalactiae COH1} PDB: 3fax_A*

Probab=92.97  E-value=0.074  Score=57.67  Aligned_cols=65  Identities=17%  Similarity=0.197  Sum_probs=48.9

Q ss_pred             EEEEeecC-CceEEEEe-eeCCCcc---ccccCCCCCCCccccccccCCCcEEEEEEeCCee-----EEEEEEEcC--e-
Q 016838          292 VEIQYSGD-GEIVEVAG-SFNGWHH---RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGT-----YEIKFIVDG--Q-  358 (381)
Q Consensus       292 VTF~W~g~-AkeVeVaG-SFNnW~~---~IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG~-----YEYKFIVDG--e-  358 (381)
                      |.|+..++ |+.|+|.+ ++++|..   .++|.+.            ..|+|.+.+.+.||.     +.|+|.|++  . 
T Consensus       146 v~F~vwAP~A~~V~L~l~d~~~~~~~~~~~~m~~~------------~~gvW~~~v~~~~G~~~~~g~~Y~yrv~~~~~~  213 (877)
T 3faw_A          146 VEASLWSPSADSVTMIIYDKDNQNRVVATTPLVKN------------NKGVWQTILDTKLGIKNYTGYYYLYEIKRGKDK  213 (877)
T ss_dssp             EEEEEECTTCSEEEEEEEETTEEEEEEEEEECEEC------------TTSEEEEEECGGGTCSCCTTCEEEEEEEETTEE
T ss_pred             EEEEEECCCCCEEEEEEEeCCCCccceeeeccccC------------CCCEEEEEECCCCCCccCCCeEEEEEEeeCCce
Confidence            88977665 99999998 6778853   5788763            679999999766662     678888863  3 


Q ss_pred             -eecCCCCCee
Q 016838          359 -WKVDPQRESV  368 (381)
Q Consensus       359 -W~~DP~~PtV  368 (381)
                       ...||-...+
T Consensus       214 ~~~~DPYA~~~  224 (877)
T 3faw_A          214 VKILDPYAKSL  224 (877)
T ss_dssp             EEECCTTCSCB
T ss_pred             eEecCccceec
Confidence             5678887544

>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus}

Probab=92.29  E-value=0.17  Score=54.82  Aligned_cols=64  Identities=16%  Similarity=0.255  Sum_probs=46.8

Q ss_pred             EEEEEeecC-CceEEEEeeeCCCc----cccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEE--cCe--ee
Q 016838          291 VVEIQYSGD-GEIVEVAGSFNGWH----HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIV--DGQ--WK  360 (381)
Q Consensus       291 ~VTF~W~g~-AkeVeVaGSFNnW~----~~IpM~Kd~~~~~~a~~~skesGvFsttL~-LpPG~YEYKFIV--DGe--W~  360 (381)
                      .|+|+..++ |+.|.|.+ |++|.    ..++|.+.            ..|+|.+.+. +.+|.+ |+|.|  +|.  ..
T Consensus       326 gv~F~vwaP~A~~V~l~l-f~~~~~~~~~~~~m~~~------------~~gvW~~~v~~~~~g~~-Y~y~v~~~g~~~~~  391 (921)
T 2wan_A          326 ATSFRVWAPTASNVQLLL-YNSEKGSITKQLEMQKS------------DNGTWKLQVSGNLENWY-YLYQVTVNGTTQTA  391 (921)
T ss_dssp             EEEEEEECTTCSEEEEEE-ESSSSSCCSEEEECEEC------------GGGEEEEEEESCCTTCE-EEEEEECSSCEEEE
T ss_pred             eEEEEEECCCCCEEEEEE-EeCCCCCcCeEEeCeeC------------CCCEEEEEEccCCCCCE-EEEEEEeCCeEEEe
Confidence            688877665 99999997 99994    34788763            4699999986 567753 77776  565  45


Q ss_pred             cCCCCCee
Q 016838          361 VDPQRESV  368 (381)
Q Consensus       361 ~DP~~PtV  368 (381)
                      .||-...+
T Consensus       392 ~DPya~~~  399 (921)
T 2wan_A          392 VDPYARAI  399 (921)
T ss_dssp             CCTTCSSB
T ss_pred             cCCcceee
Confidence            68876543

>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A*

Probab=91.71  E-value=0.032  Score=55.81  Aligned_cols=70  Identities=20%  Similarity=0.411  Sum_probs=0.0

Q ss_pred             cEEEEEEe-ec---CCceEEEEeeeC---CCcc--ccccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE-c-
Q 016838          289 LEVVEIQY-SG---DGEIVEVAGSFN---GWHH--RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV-D-  356 (381)
Q Consensus       289 Lk~VTF~W-~g---~AkeVeVaGSFN---nW~~--~IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG-~YEYKFIV-D-  356 (381)
                      ...|+|+. ..   .++.|+|+|+-.   +|++  .++|...           .....|++++.||+| .+||||+| | 
T Consensus       430 ~v~v~F~v~~~~t~~G~~v~v~G~~~~LG~W~~~~a~~l~~~-----------~~~~~W~~~v~lp~~~~~eyKy~~~~~  498 (527)
T 1gcy_A          430 LVSVSFRCDNGATQMGDSVYAVGNVSQLGNWSPAAALRLTDT-----------SGYPTWKGSIALPAGQNEEWKCLIRNE  498 (527)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEEEEEEecccCCCCCeEEEEcChhHhCCCCcccCccCccC-----------CCCCeEEEEEEeCCCCcEEEEEEEEeC
Confidence            35677776 33   389999999885   8987  3677521           246789999999999 59999997 3 


Q ss_pred             -C-----eeecCCCCCeec
Q 016838          357 -G-----QWKVDPQRESVT  369 (381)
Q Consensus       357 -G-----eW~~DP~~PtVt  369 (381)
                       |     .|...|+.-...
T Consensus       499 ~~~~~~~~We~g~nr~~~~  517 (527)
T 1gcy_A          499 ANATQVRQWQGGANNSLTP  517 (527)
T ss_dssp             -------------------
T ss_pred             CCCcceeEecCCCCeeEEC
Confidence             3     376666554443

>1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A* 2d0g_A* 2d0h_A* 1izk_A

Probab=90.01  E-value=0.14  Score=52.40  Aligned_cols=60  Identities=10%  Similarity=0.129  Sum_probs=41.4

Q ss_pred             EEEEEEee----c-CCceEEEEeeeCCCccccccCC--CCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEcC
Q 016838          290 EVVEIQYS----G-DGEIVEVAGSFNGWHHRIKMDP--LPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDG  357 (381)
Q Consensus       290 k~VTF~W~----g-~AkeVeVaGSFNnW~~~IpM~K--d~~~~~~a~~~skesGvFsttL~LpPG~YEYKFIVDG  357 (381)
                      ..|+|+..    + .++.|.|.+.|++-...++|.+  ..        .+...|+|++.+........|+|.|+|
T Consensus        30 ~~v~f~v~~~~~ap~a~~V~l~~~~~~~~~~~~m~~~~~~--------~~~~~~~w~~~i~~~~~g~~Y~f~i~~   96 (637)
T 1ji1_A           30 QSVTLKLRTFKGDITSANIKYWDTADNAFHWVPMVWDSND--------PTGTFDYWKGTIPASPSIKYYRFQIND   96 (637)
T ss_dssp             CCEEEEEEEETTCCSEEEEEEEETTTTEEEEEECEEEEEC--------TTSSEEEEEEEECCCSSCEEEEEEEEE
T ss_pred             CEEEEEEEEecCcCCeeEEEEEEecCCCEEEEEeEEeecc--------ccCCeeEEEEEEECCCceEEEEEEEEE
Confidence            35778655    4 4899999999875223478876  21        112458999999866566779999975

>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1

Probab=89.38  E-value=0.092  Score=53.25  Aligned_cols=59  Identities=19%  Similarity=0.231  Sum_probs=41.6

Q ss_pred             EEEEEE-eecCCceEEE-EeeeCCCcc---ccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEc
Q 016838          290 EVVEIQ-YSGDGEIVEV-AGSFNGWHH---RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVD  356 (381)
Q Consensus       290 k~VTF~-W~g~AkeVeV-aGSFNnW~~---~IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG~YEYKFIVD  356 (381)
                      ..+.|+ |...+++|.| .|+|++|+.   .++|.+..        .+...|+|++.+......+.|||.|.
T Consensus        23 ~~~~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~M~~~~--------~~~~~~~w~~~i~~~~~~~~Y~f~i~   86 (583)
T 1ea9_C           23 VHLRIRTKKDDMTAVYALAGDKYMWDHTMEYVPMTKLA--------TDELFDYWECEVTPPYRRVKYGFLLQ   86 (583)
T ss_dssp             EECCCEECTTCCSBEEEEEECSSSCTTTCEEEEECEEE--------ECSSCEEECCEECCTTSCEEECBCCE
T ss_pred             EEEEEEECCCCccEEEEEECCCcCCCCcEEEEEEEEEe--------ccCCeEEEEEEEECCCceEEEEEEEE
Confidence            445554 4446899999 799999975   46898641        11234679999987777788888874

>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus}

Probab=89.33  E-value=0.49  Score=51.24  Aligned_cols=55  Identities=22%  Similarity=0.398  Sum_probs=38.5

Q ss_pred             ecCCceEEEEeee-------CCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEcCeee
Q 016838          297 SGDGEIVEVAGSF-------NGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWK  360 (381)
Q Consensus       297 ~g~AkeVeVaGSF-------NnW~~~IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG~YEYKFIVDGeW~  360 (381)
                      ......+.+.|+|       .+|.+.-....         .....+|.|+.+-.||+|.||||+.++|.|.
T Consensus       160 ~~~~~~~~~~g~~~~~~g~~~~w~p~~~~~~---------~~~~~~~~y~~~~~l~~g~y~~kv~~~~~w~  221 (921)
T 2wan_A          160 SANPVTAVLVGDLQQALGAANNWSPDDDHTL---------LKKINPNLYQLSGTLPAGTYQYKIALDHSWN  221 (921)
T ss_dssp             ECCCCCEEEEETTSGGGTCSSSSCTTCGGGB---------CEEEETTEEEEEEEECSEEEEEEEEETTSSS
T ss_pred             cccccccccccchhhhccccccCCCCCCcce---------eeccCCcceeeeeccCCcceeEEEeecCccc
Confidence            3345678888876       46776422110         1112478999999999999999999998874

>2ya1_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; HET: BGC GLC; 2.25A {Streptococcus pneumoniae}

Probab=88.27  E-value=0.45  Score=52.14  Aligned_cols=64  Identities=19%  Similarity=0.306  Sum_probs=45.9

Q ss_pred             EEEEeecC-CceEEEEe-eeCCCcc---ccccCCCCCCCccccccccCCCcEEEEEEeC--Ce-----eEEEEEEEc--C
Q 016838          292 VEIQYSGD-GEIVEVAG-SFNGWHH---RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLY--PG-----TYEIKFIVD--G  357 (381)
Q Consensus       292 VTF~W~g~-AkeVeVaG-SFNnW~~---~IpM~Kd~~~~~~a~~~skesGvFsttL~Lp--PG-----~YEYKFIVD--G  357 (381)
                      |.|+..++ |+.|.|++ +|++|..   .++|.+.            ..|+|.+.+.-.  +|     -+.|+|.|+  |
T Consensus       333 v~F~vwAP~A~~V~L~l~d~~~~~~~~~~~~m~~~------------~~gvW~~~v~~~~~~g~~~~~G~~Y~y~i~~~~  400 (1014)
T 2ya1_A          333 VDLTLWSPSADKVSVVVYDKNDPDKVVGTVALEKG------------ERGTWKQTLDSTNKLGITDFTGYYYQYQIERQG  400 (1014)
T ss_dssp             EEEEEECTTCSEEEEEEECSSCTTSEEEEEECEEC------------GGGEEEEEECTTCSSCCSCCTTCEEEEEEEETT
T ss_pred             EEEEEECCCCCEEEEEEEECCCCCccceEEecccC------------CCCEEEEEEcccccCCccccCCcEEEEEEEeCC
Confidence            78976665 99999999 8888864   4788763            569999988631  23     266888886  5


Q ss_pred             e--eecCCCCCe
Q 016838          358 Q--WKVDPQRES  367 (381)
Q Consensus       358 e--W~~DP~~Pt  367 (381)
                      .  ...||-...
T Consensus       401 ~~~~~~DPYa~~  412 (1014)
T 2ya1_A          401 KTVLALDPYAKS  412 (1014)
T ss_dssp             EEEEECCTTCSS
T ss_pred             eEEEecCcccee
Confidence            4  467886543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	381
d1z0na1	87	b.1.18.21 (A:77-163) 5'-AMP-activated protein kina	3e-18
d2qlvb1	87	b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisi	1e-15

>d1z0na1 b.1.18.21 (A:77-163) 5'-AMP-activated protein kinase subunit beta-1 {Rattus norvegicus [TaxId: 10116]} Length = 87

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: 5'-AMP-activated protein kinase subunit beta-1
species: Rattus norvegicus [TaxId: 10116]

 Score = 76.9 bits (189), Expect = 3e-18
 Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 15/90 (16%)

Query: 292 VEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEI 351
              +++G G+ V ++GSFN W               +   +R    +  +L L  G ++ 
Sbjct: 4   TVFRWTGGGKEVYLSGSFNNWS--------------KLPMTRSQNNFVAILDLPEGEHQY 49

Query: 352 KFIVDGQWKVDPQRESVTKG-GICNNILRV 380
           KF VDGQW  DP    VT   G  NNI++V
Sbjct: 50  KFFVDGQWTHDPSEPIVTSQLGTVNNIIQV 79

>d2qlvb1 b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 87

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: SIP2
species: Saccharomyces cerevisiae [TaxId: 4932]

 Score = 69.7 bits (170), Expect = 1e-15
 Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 11/95 (11%)

Query: 287 SGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYP 346
           S +  VEI++   G  V V GSF  W   I + P   ++            +   L L P
Sbjct: 1   SLMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGS----------FHVKLRLLP 50

Query: 347 GTYEIKFIVDGQWKVDPQRESVTKG-GICNNILRV 380
           GT+  +FIVD + +V     + T   G   N + V
Sbjct: 51  GTHRFRFIVDNELRVSDFLPTATDQMGNFVNYIEV 85

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	381
d2qlvb1	87	SIP2 {Saccharomyces cerevisiae [TaxId: 4932]}	99.93
d1z0na1	87	5'-AMP-activated protein kinase subunit beta-1 {Ra	99.92
d2bhua1	97	Glycosyltrehalose trehalohydrolase, N-terminal dom	98.4
d1m7xa1	110	1,4-alpha-glucan branching enzyme, N-terminal doma	98.35
d1qhoa2	110	Cyclodextrin glycosyltransferase, C-terminal domai	97.97
d1kula_	108	Glucoamylase, granular starch-binding domain {Aspe	97.93
d1cyga2	106	Cyclodextrin glycosyltransferase, C-terminal domai	97.86
d3bmva2	105	Cyclodextrin glycosyltransferase, C-terminal domai	97.78
d1eh9a1	90	Glycosyltrehalose trehalohydrolase, N-terminal dom	97.6
d1vema1	99	beta-amylase {Bacillus cereus [TaxId: 1396]}	97.12
d2fhfa1	115	Pullulanase PulA {Klebsiella pneumoniae [TaxId: 57	96.06
d1bf2a1	162	Isoamylase, N-terminal domain N {Pseudomonas amylo	95.22
d3c8da1	145	Enterochelin esterase {Shigella flexneri 2a str. 2	84.5

>d2qlvb1 b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisiae [TaxId: 4932]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: SIP2
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=99.93  E-value=2.1e-26  Score=181.31  Aligned_cols=85  Identities=32%  Similarity=0.441  Sum_probs=76.7

Q ss_pred             CCcEEEEEEeecCCceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEcCeeecCCCCC
Q 016838          287 SGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRE  366 (381)
Q Consensus       287 sgLk~VTF~W~g~AkeVeVaGSFNnW~~~IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG~YEYKFIVDGeW~~DP~~P  366 (381)
                      +.+.||+|+|.++|++|+|+|+||+|++.++|.+..          ..+|.|.+++.|+||.|+|||+|||+|++||++|
T Consensus         1 s~~vpv~f~w~~~g~~V~v~GsFn~W~~~~~~~~~~----------~~~g~~~~~l~l~~G~y~YKFiVDG~w~~d~~~p   70 (87)
T d2qlvb1           1 SLMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDS----------DNNGSFHVKLRLLPGTHRFRFIVDNELRVSDFLP   70 (87)
T ss_dssp             CCCEEEEEEECSCCSCEEEEEGGGTTSSCEECEECS----------SSTTCEEEEEEECSEEEEEEEEETTEEECCTTSC
T ss_pred             CeEEEEEEEECCCCeEEEEEEEecCcCccccccccc----------CCCccEEEEEeCCCCCEEEEEEECCcEEcCCCCC
Confidence            357899999999999999999999999887765531          3679999999999999999999999999999999


Q ss_pred             eecc-CCccceEEEeC
Q 016838          367 SVTK-GGICNNILRVI  381 (381)
Q Consensus       367 tVtD-~GnvNNVL~V~  381 (381)
                      ++.+ .|+.||+|.|+
T Consensus        71 ~~~d~~G~~nnvi~V~   86 (87)
T d2qlvb1          71 TATDQMGNFVNYIEVR   86 (87)
T ss_dssp             EEBCSSCCCEEEEEEC
T ss_pred             eeECCCCCEeEEEEEE
Confidence            9887 69999999985

>d1z0na1 b.1.18.21 (A:77-163) 5'-AMP-activated protein kinase subunit beta-1 {Rattus norvegicus [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: 5'-AMP-activated protein kinase subunit beta-1
species: Rattus norvegicus [TaxId: 10116]

Probab=99.92  E-value=2.5e-25  Score=176.14  Aligned_cols=78  Identities=36%  Similarity=0.621  Sum_probs=72.0

Q ss_pred             EEEEEEeecCCceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEcCeeecCCCCCeec
Q 016838          290 EVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVT  369 (381)
Q Consensus       290 k~VTF~W~g~AkeVeVaGSFNnW~~~IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG~YEYKFIVDGeW~~DP~~PtVt  369 (381)
                      +||+|+|+++|++|+|+|||++|++ .+|.+             .+|.|++++.|+||.|+|||+|||+|++||+.|++.
T Consensus         2 ~P~~f~w~~~a~~V~v~Gsfn~W~~-~~~~~-------------~~g~~~~tl~L~~G~y~YKFiVDG~w~~d~~~~~~~   67 (87)
T d1z0na1           2 RPTVFRWTGGGKEVYLSGSFNNWSK-LPMTR-------------SQNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVT   67 (87)
T ss_dssp             EEEEEEECSCCSCEEEEEGGGTTCC-EECEE-------------ETTEEEEEEEECSEEEEEEEEETTEEECCTTSCEEE
T ss_pred             CCEEEEEcCCCEEEEEEEEeCCCCc-ccccc-------------CCCcEEEEEECCCceEEEEEEECCEEEeCCCCCeeE
Confidence            7999999999999999999999985 56653             579999999999999999999999999999999998


Q ss_pred             c-CCccceEEEeC
Q 016838          370 K-GGICNNILRVI  381 (381)
Q Consensus       370 D-~GnvNNVL~V~  381 (381)
                      + .|+.||+|.|+
T Consensus        68 d~~G~~Nnvi~V~   80 (87)
T d1z0na1          68 SQLGTVNNIIQVK   80 (87)
T ss_dssp             CTTSCEEEEEEEC
T ss_pred             CCCCCEEEEEEEC
Confidence            7 79999999985

>d2bhua1 b.1.18.2 (A:14-110) Glycosyltrehalose trehalohydrolase, N-terminal domain N {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Glycosyltrehalose trehalohydrolase, N-terminal domain N
species: Deinococcus radiodurans [TaxId: 1299]

Probab=98.40  E-value=1.1e-07  Score=75.75  Aligned_cols=64  Identities=19%  Similarity=0.182  Sum_probs=52.4

Q ss_pred             EEEEEEeecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEcCeeecCCCCCee
Q 016838          290 EVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESV  368 (381)
Q Consensus       290 k~VTF~W~g~-AkeVeVaGSFNnW~~~IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG~YEYKFIVDGeW~~DP~~PtV  368 (381)
                      ..|+|+..++ |++|.|.|.+.    .++|.++            ..|.|.+++.+.+|.+ |+|.|||.|+.||.....
T Consensus        21 ~g~~FrvwAP~A~~V~l~~~~~----~~~m~~~------------~~G~w~~~~~~~~G~~-Y~y~vdg~~~~DPyar~~   83 (97)
T d2bhua1          21 AGTRFRLWTSTARTVAVRVNGT----EHVMTSL------------GGGIYELELPVGPGAR-YLFVLDGVPTPDPYARFL   83 (97)
T ss_dssp             CCEEEEEECSSCSSEEEEETTE----EEECEEE------------ETTEEEEEESCCTTCE-EEEEETTEEECCTTCSCC
T ss_pred             CeEEEEEECCCCCEeEEEeeCC----ccCCEEc------------cCEEEEEEcCCCCCCE-EEEEECCeEccCCchhcC
Confidence            3588987776 99999999643    3578874            6799999999999986 999999999999987654


Q ss_pred             cc
Q 016838          369 TK  370 (381)
Q Consensus       369 tD  370 (381)
                      .+
T Consensus        84 ~~   85 (97)
T d2bhua1          84 PD   85 (97)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

>d1m7xa1 b.1.18.2 (A:117-226) 1,4-alpha-glucan branching enzyme, N-terminal domain N {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: 1,4-alpha-glucan branching enzyme, N-terminal domain N
species: Escherichia coli [TaxId: 562]

Probab=98.35  E-value=7.6e-07  Score=71.36  Aligned_cols=69  Identities=20%  Similarity=0.290  Sum_probs=52.1

Q ss_pred             EEEEEEeec-CCceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEE---cCeee--cC
Q 016838          290 EVVEIQYSG-DGEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV---DGQWK--VD  362 (381)
Q Consensus       290 k~VTF~W~g-~AkeVeVaGSFNnW~~~-IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG~YEYKFIV---DGeW~--~D  362 (381)
                      .-|+|+..+ .|+.|+|+|+||+|... .+|.+.           ...|+|++.+.....-..|||.|   ||+|.  .|
T Consensus        20 ~Gv~FrvwAP~A~~V~l~gdfn~~~~~~~~m~~~-----------~~~G~W~~~i~~~~~G~~Y~y~v~~~~G~~~~~~D   88 (110)
T d1m7xa1          20 TGTRFSVWAPNARRVSVVGQFNYWDGRRHPMRLR-----------KESGIWELFIPGAHNGQLYKYEMIDANGNLRLKSD   88 (110)
T ss_dssp             EEEEEEEECSSCSCEEEEEGGGTSCTTTCBCCCC-----------TTTTEEEEEEETCCTTCEEEEEEECTTSCEEEECC
T ss_pred             ceEEEEEECCCCCEEEEEEECCCCCCceEEeEEe-----------cCCCcEEEEecCCCCCCEEEEEEEcCCCcEeEEcC
Confidence            448897555 49999999999999764 577653           36799999998655556788887   78866  48


Q ss_pred             CCCCeec
Q 016838          363 PQRESVT  369 (381)
Q Consensus       363 P~~PtVt  369 (381)
                      |-.-...
T Consensus        89 PYA~~~e   95 (110)
T d1m7xa1          89 PYAFEAQ   95 (110)
T ss_dssp             TTCSSEE
T ss_pred             hhhcccc
Confidence            8776543

>d1qhoa2 b.3.1.1 (A:577-686) Cyclodextrin glycosyltransferase, C-terminal domain {Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: Cyclodextrin glycosyltransferase, C-terminal domain
species: Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]

Probab=97.97  E-value=3.7e-05  Score=61.23  Aligned_cols=74  Identities=19%  Similarity=0.397  Sum_probs=50.4

Q ss_pred             EEEEEEeec-----CCceEEEEeeeC---CCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---
Q 016838          290 EVVEIQYSG-----DGEIVEVAGSFN---GWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---  355 (381)
Q Consensus       290 k~VTF~W~g-----~AkeVeVaGSFN---nW~~~--IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG-~YEYKFIV---  355 (381)
                      ..|+|++..     .|+.|+|+|+..   +|++.  ++|....     ........+.|++++.||+| .+||||+|   
T Consensus         6 ~~V~f~v~~~~~T~~Gq~v~ivG~~~~LG~W~~~~a~~l~~~~-----~~~~~~~~~~W~~~v~lp~~~~~eYKyvi~~~   80 (110)
T d1qhoa2           6 TSVVFTVKSAPPTNLGDKIYLTGNIPELGNWSTDTSGAVNNAQ-----GPLLAPNYPDWFYVFSVPAGKTIQFKFFIKRA   80 (110)
T ss_dssp             EEEEEEEESCCCCCTTCEEEEEESSGGGTTTCCCCSSCSSCCB-----CCCBCTTTTSEEEEEEEETTCEEEEEEEEECT
T ss_pred             eEEEEEEeCcccCCCCCEEEEEeCcHHHCCCChhhcccccccc-----CccccccCCeEEEEEEECCCCEEEEEEEEEcC
Confidence            578888754     379999999974   89875  4665421     01112245789999999998 69999987   


Q ss_pred             cCe--eecCCCCCee
Q 016838          356 DGQ--WKVDPQRESV  368 (381)
Q Consensus       356 DGe--W~~DP~~PtV  368 (381)
                      ||.  |.-.|+.-..
T Consensus        81 ~g~~~WE~g~NR~~~   95 (110)
T d1qhoa2          81 DGTIQWENGSNHVAT   95 (110)
T ss_dssp             TSCEEECCSSCEEEE
T ss_pred             CCCEEEcCCCCEEEE
Confidence            453  6555544333

>d1kula_ b.3.1.1 (A:) Glucoamylase, granular starch-binding domain {Aspergillus niger [TaxId: 5061]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: Glucoamylase, granular starch-binding domain
species: Aspergillus niger [TaxId: 5061]

Probab=97.93  E-value=8.6e-06  Score=64.75  Aligned_cols=76  Identities=28%  Similarity=0.524  Sum_probs=55.1

Q ss_pred             CCcEEEEEEeec---CCceEEEEeeeC---CCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE--
Q 016838          287 SGLEVVEIQYSG---DGEIVEVAGSFN---GWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV--  355 (381)
Q Consensus       287 sgLk~VTF~W~g---~AkeVeVaGSFN---nW~~~--IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG-~YEYKFIV--  355 (381)
                      +....|+|....   .|+.|+|+|+..   +|++.  ++|....        .....+.|+.++.|++| .+||||+|  
T Consensus         4 ~~~v~V~F~v~~~t~~Gq~v~vvGs~~~LG~W~~~~a~~l~~~~--------~~~~~~~w~~~v~~~~~~~~eYKyvi~~   75 (108)
T d1kula_           4 PTAVAVTFDLTATTTYGENIYLVGSISQLGDWETSDGIALSADK--------YTSSDPLWYVTVTLPAGESFEYKFIRIE   75 (108)
T ss_dssp             TTCCCEEEECCCCCCSSCEEEEECSSGGGTTTCTTTSEECBCTT--------CSSSSCCCBCEECCCSCCEECCEEEEEC
T ss_pred             CCEEEEEEEEEeEcCCCCEEEEEeChHHhCCCCHHHCccceEcc--------ccCCCCCEEEEEEeCCCCeEEEEEEEEC
Confidence            345678888865   389999999964   99764  6776531        11356799999999998 69999999  


Q ss_pred             -cCe--eecCCCCCeecc
Q 016838          356 -DGQ--WKVDPQRESVTK  370 (381)
Q Consensus       356 -DGe--W~~DP~~PtVtD  370 (381)
                       ||.  |...++.-...+
T Consensus        76 ~~g~~~WE~g~NR~~~~p   93 (108)
T d1kula_          76 SDDSVEWESDPNREYTVP   93 (108)
T ss_dssp             SSSCEEECCSSCCCEECC
T ss_pred             CCCCEEEccCCCEEEEeC
Confidence             463  776665554443

>d1cyga2 b.3.1.1 (A:575-680) Cyclodextrin glycosyltransferase, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: Cyclodextrin glycosyltransferase, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.86  E-value=5.4e-05  Score=59.93  Aligned_cols=74  Identities=20%  Similarity=0.283  Sum_probs=53.4

Q ss_pred             CcEEEEEEeec----CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE--
Q 016838          288 GLEVVEIQYSG----DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV--  355 (381)
Q Consensus       288 gLk~VTF~W~g----~AkeVeVaGSF---NnW~~~--IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG-~YEYKFIV--  355 (381)
                      ...+|+|....    .|+.|+|+|+.   .+|++.  ++|....        +....+.|.+++.++.| .+||||+|  
T Consensus         4 ~~v~V~F~v~~~~t~~Gq~v~vvGs~~~LG~W~~~~a~~l~~~~--------~~~~~~~w~~~v~~~~~~~~eYKyvi~~   75 (106)
T d1cyga2           4 DQVSVRFVVNNATTNLGQNIYIVGNVYELGNWDTSKAIGPMFNQ--------VVYSYPTWYIDVSVPEGKTIEFKFIKKD   75 (106)
T ss_dssp             CEEEEEEEEESCCCCSSCEEEEEESSGGGBTTCGGGCBCCCBCS--------SSSCTTCEEEEEEEESSCEEEEEEEEEC
T ss_pred             CEEEEEEEEcceEcCCCCEEEEEcCHHHHCCCCHHHCccceecc--------CcCCCCeEEEEEEeCCCCeEEEEEEEEc
Confidence            34789998853    48999999996   699864  6787531        11235789999999999 79999998  


Q ss_pred             -cCe--eecCCCCCeec
Q 016838          356 -DGQ--WKVDPQRESVT  369 (381)
Q Consensus       356 -DGe--W~~DP~~PtVt  369 (381)
                       ||.  |...|+.-...
T Consensus        76 ~~g~~~WE~g~NR~~~~   92 (106)
T d1cyga2          76 SQGNVTWESGSNHVYTT   92 (106)
T ss_dssp             TTSCEEECCSSCEEEEC
T ss_pred             CCCCEEEcCCCCEEEEe
Confidence             564  66555554433

>d3bmva2 b.3.1.1 (A:579-683) Cyclodextrin glycosyltransferase, C-terminal domain {Thermoanaerobacterium [TaxId: 28895]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: Cyclodextrin glycosyltransferase, C-terminal domain
species: Thermoanaerobacterium [TaxId: 28895]

Probab=97.78  E-value=3.6e-05  Score=61.09  Aligned_cols=73  Identities=19%  Similarity=0.248  Sum_probs=52.3

Q ss_pred             cEEEEEEeec----CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEEc--
Q 016838          289 LEVVEIQYSG----DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIVD--  356 (381)
Q Consensus       289 Lk~VTF~W~g----~AkeVeVaGSF---NnW~~~--IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG-~YEYKFIVD--  356 (381)
                      ...|+|....    .|+.|+|+|+-   .+|++.  ++|....        +....+.|++++.||+| .+||||++.  
T Consensus         5 ~v~V~F~v~~~~t~~Gq~v~vvGs~~~LG~W~~~~a~~l~~~~--------~~~~~~~W~~~v~lp~~~~~eYKyv~~~~   76 (105)
T d3bmva2           5 QICVRFVVNNASTVYGENVYLTGNVAELGNWDTSKAIGPMFNQ--------VVYQYPTWYYDVSVPAGTTIQFKFIKKNG   76 (105)
T ss_dssp             EEEEEEEEESCCCCTTCEEEEEESSGGGTTTCGGGCBCSCBCS--------SSSCTTSEEEEEEEETTCEEEEEEEEESS
T ss_pred             EEEEEEEEcccccCCCCEEEEEeCcHHHCCCCHHHCccccccc--------ccCCCCeEEEEEEECCCCeEEEEEEEEcC
Confidence            3678898763    48999999996   499763  6776531        12245789999999999 599999983  


Q ss_pred             C--eeecCCCCCeec
Q 016838          357 G--QWKVDPQRESVT  369 (381)
Q Consensus       357 G--eW~~DP~~PtVt  369 (381)
                      |  .|...|+.-...
T Consensus        77 ~~~~WE~g~NR~~~~   91 (105)
T d3bmva2          77 NTITWEGGSNHTYTV   91 (105)
T ss_dssp             SCCEECCSSCEEEEC
T ss_pred             CeEEEcCCCCEEEEc
Confidence            3  276666554433

>d1eh9a1 b.1.18.2 (A:1-90) Glycosyltrehalose trehalohydrolase, N-terminal domain N {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Glycosyltrehalose trehalohydrolase, N-terminal domain N
species: Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]

Probab=97.60  E-value=1e-05  Score=62.98  Aligned_cols=62  Identities=15%  Similarity=0.100  Sum_probs=48.5

Q ss_pred             EEEEEeecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEE-EeCCeeEEEEEEEcCe-eecCCCCCe
Q 016838          291 VVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVL-WLYPGTYEIKFIVDGQ-WKVDPQRES  367 (381)
Q Consensus       291 ~VTF~W~g~-AkeVeVaGSFNnW~~~IpM~Kd~~~~~~a~~~skesGvFsttL-~LpPG~YEYKFIVDGe-W~~DP~~Pt  367 (381)
                      .|+|+..++ |+.|.|.|.+.+|   ++|.+.            .+|+|++++ .+.+| +.|+|.|||. .+.||....
T Consensus        10 gv~FrvwAP~A~~V~l~~~~~~~---~~m~~~------------~~G~W~~~v~~~~~G-~~Y~y~v~~~~~~~DP~s~~   73 (90)
T d1eh9a1          10 EVIFTLWAPYQKSVKLKVLEKGL---YEMERD------------EKGYFTITLNNVKVR-DRYKYVLDDASEIPDPASRY   73 (90)
T ss_dssp             CEECCEECTTCSCCBCCCSSSCC---CCCCCC------------TTSEECCEESSCCSC-CEECEECTTSCEECCTTCSC
T ss_pred             CEEEEEECCCCCEEEEEeecCCc---ccceeC------------CCCEEEEEeCCCCCC-ceeEEEEeCCcCcCCccHhc
Confidence            478977776 9999999875443   578874            689999999 48888 5699999875 677987654


Q ss_pred             e
Q 016838          368 V  368 (381)
Q Consensus       368 V  368 (381)
                      .
T Consensus        74 ~   74 (90)
T d1eh9a1          74 Q   74 (90)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1vema1 b.3.1.1 (A:418-516) beta-amylase {Bacillus cereus [TaxId: 1396]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: beta-amylase
species: Bacillus cereus [TaxId: 1396]

Probab=97.12  E-value=0.0005  Score=53.93  Aligned_cols=71  Identities=20%  Similarity=0.259  Sum_probs=47.5

Q ss_pred             EEEEEEeec----CCceEEEEeeeC---CCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---c
Q 016838          290 EVVEIQYSG----DGEIVEVAGSFN---GWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---D  356 (381)
Q Consensus       290 k~VTF~W~g----~AkeVeVaGSFN---nW~~~--IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG-~YEYKFIV---D  356 (381)
                      ..++|...+    .|+.|+|+|+..   +|++.  +.|..          .....+.|++.+.||+| .+||||+|   |
T Consensus         3 v~~~~~v~~~~T~~Gq~v~vvGs~~eLG~W~~~ka~~l~~----------~~~~~~~W~~~v~lp~~~~~eYKyvi~~~~   72 (99)
T d1vema1           3 VMQTIVVKNVPTTIGDTVYITGNRAELGSWDTKQYPIQLY----------YDSHSNDWRGNVVLPAERNIEFKAFIKSKD   72 (99)
T ss_dssp             EEEEEEEESCCCCTTCEEEEEESSGGGTTTCSSSSCEECE----------EETTTTEEEEEEEEETTCCEEEEEEEECTT
T ss_pred             eeEEEEEeeeEcCCCCEEEEEeCcHHHCCCChhhheeeee----------ccCCCCCEEEEEEEcCCCcEEEEEEEEeCC
Confidence            345665544    489999999976   99864  22221          11355689999999999 59999998   5


Q ss_pred             Ce---eecCCCCCeecc
Q 016838          357 GQ---WKVDPQRESVTK  370 (381)
Q Consensus       357 Ge---W~~DP~~PtVtD  370 (381)
                      |.   |...++.-...+
T Consensus        73 g~~~~WE~g~Nr~~~~p   89 (99)
T d1vema1          73 GTVKSWQTIQQSWNPVP   89 (99)
T ss_dssp             SCEEEECSSCEEESSCC
T ss_pred             CCEEEecCCCCEEEECC
Confidence            53   655554433333

>d2fhfa1 b.1.18.2 (A:288-402) Pullulanase PulA {Klebsiella pneumoniae [TaxId: 573]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Pullulanase PulA
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.06  E-value=0.0037  Score=49.44  Aligned_cols=69  Identities=16%  Similarity=0.053  Sum_probs=45.4

Q ss_pred             EEEEEeecC-CceEEEEeeeCCCccc--cccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEcCe--------
Q 016838          291 VVEIQYSGD-GEIVEVAGSFNGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQ--------  358 (381)
Q Consensus       291 ~VTF~W~g~-AkeVeVaGSFNnW~~~--IpM~Kd~~~~~~a~~~skesGvFsttL~-LpPG~YEYKFIVDGe--------  358 (381)
                      .|.|+..++ |++|.|.--..++...  ..|..+           ...|+|.+.+. +.+|.+ |+|.|+|.        
T Consensus        18 g~~F~lwAP~A~~V~L~l~~~~~~~~~~~~~~~~-----------~~~GvW~~~i~~~~~G~~-Y~y~v~~~~~~~~~~~   85 (115)
T d2fhfa1          18 GVTFRVWAPTAQQVELVIYSADKKVIASHPMTRD-----------SASGAWSWQGGSDLKGAF-YRYAMTVYHPQSRKVE   85 (115)
T ss_dssp             EEEEEEECTTCSEEEEEEECTTCCEEEEEECEEC-----------TTTCEEEEEECGGGTTCE-EEEEEEEEETTTTEEE
T ss_pred             cEEEEEECCCCCEEEEEEECCCCCccceeeeeEc-----------CCCCEEEEEECCCCCCCE-EEEEEEcccccccCCc
Confidence            588977776 9999998443333322  234332           35799999995 788876 88888753        


Q ss_pred             --eecCCCCCeeccC
Q 016838          359 --WKVDPQRESVTKG  371 (381)
Q Consensus       359 --W~~DP~~PtVtD~  371 (381)
                        ...||-...+..+
T Consensus        86 ~~~~~DPYA~a~~~~  100 (115)
T d2fhfa1          86 QYEVTDPYAHSLSTN  100 (115)
T ss_dssp             EEEECCTTCSCBCGG
T ss_pred             ceEecceeeEEEccC
Confidence              3467777655533

>d1bf2a1 b.1.18.2 (A:1-162) Isoamylase, N-terminal domain N {Pseudomonas amyloderamosa [TaxId: 32043]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Isoamylase, N-terminal domain N
species: Pseudomonas amyloderamosa [TaxId: 32043]

Probab=95.22  E-value=0.014  Score=48.55  Aligned_cols=56  Identities=11%  Similarity=0.176  Sum_probs=42.1

Q ss_pred             EEEEEeecC-CceEEEEeeeCCCccc----cccCCCCCCCccccccccCCCcEEEEEE--------eCCeeEEEEEEEcC
Q 016838          291 VVEIQYSGD-GEIVEVAGSFNGWHHR----IKMDPLPSSSIIEPIRSRKSRLWSTVLW--------LYPGTYEIKFIVDG  357 (381)
Q Consensus       291 ~VTF~W~g~-AkeVeVaGSFNnW~~~----IpM~Kd~~~~~~a~~~skesGvFsttL~--------LpPG~YEYKFIVDG  357 (381)
                      .|+|+..++ |+.|.|.--.+++...    ++|.+            ...|+|.+.+.        +.+|.| |.|.|||
T Consensus        17 ~v~F~vwAp~A~~V~L~ly~~~~~~~~~~~~~l~~------------~~~gvW~~~v~~~~~~~~g~~~G~~-Y~yrv~G   83 (162)
T d1bf2a1          17 NITFRVYSSQATRIVLYLYSAGYGVQESATYTLSP------------AGSGVWAVTVPVSSIKAAGITGAVY-YGYRAWG   83 (162)
T ss_dssp             EEEEEEECSSCSEEEEEEESSSSSCCCSEEEECEE------------CSTTEEEEEEEHHHHHHTTCCSCCE-EEEEEEB
T ss_pred             eEEEEEECCCCCEEEEEEEcCCCCCcceeEEEccc------------ccccEEEEEecccccccccCCCCcE-EEEEEcc
Confidence            478976665 9999999876667532    45654            36899999985        778865 8899998


Q ss_pred             ee
Q 016838          358 QW  359 (381)
Q Consensus       358 eW  359 (381)
                      .|
T Consensus        84 p~   85 (162)
T d1bf2a1          84 PN   85 (162)
T ss_dssp             TT
T ss_pred             cc
Confidence            65

>d3c8da1 b.1.18.20 (A:6-150) Enterochelin esterase {Shigella flexneri 2a str. 2457T [TaxId: 198215]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Enterochelin esterase N-terminal domain-like
domain: Enterochelin esterase
species: Shigella flexneri 2a str. 2457T [TaxId: 198215]

Probab=84.50  E-value=2.5  Score=35.00  Aligned_cols=82  Identities=20%  Similarity=0.159  Sum_probs=54.9

Q ss_pred             CCcEEEEEEeecC--------CceEEEEeeeCCCccc----cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEE
Q 016838          287 SGLEVVEIQYSGD--------GEIVEVAGSFNGWHHR----IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKF  353 (381)
Q Consensus       287 sgLk~VTF~W~g~--------AkeVeVaGSFNnW~~~----IpM~Kd~~~~~~a~~~skesGvFsttL~LpPG-~YEYKF  353 (381)
                      .+...|||-|+++        ...|+|.+.-...+.+    ..|.+-           ....+|..++.||.. +-.|.|
T Consensus        20 ~~~~~VTFlWR~~~~~~~~sa~~~Vyl~~n~vtDh~~~~~~~~m~rl-----------~gTDVW~~s~~vpad~rgsY~f   88 (145)
T d3c8da1          20 DEMFEVTFWWRDPQGSEEYSTIKRVWVYITGVTDHHQNSQPQSMQRI-----------AGTDVWQWTTQLNANWRGSYCF   88 (145)
T ss_dssp             SSEEEEEEEEECTTCSTTTCCCCEEEEEETTTC-------CCBCEEC-----------TTSSEEEEEEEEETTCEEEEEE
T ss_pred             CCCEEEEEEEcCccccccccccceEEEecccccccccccChhhhhcC-----------CCCCeEEEEEEECcccEEEEEE
Confidence            4568999999873        3569998875444321    236654           367999999999987 899999


Q ss_pred             EE-c---------C------e-e-------ecCCCCCeecc--CCccceEEE
Q 016838          354 IV-D---------G------Q-W-------KVDPQRESVTK--GGICNNILR  379 (381)
Q Consensus       354 IV-D---------G------e-W-------~~DP~~PtVtD--~GnvNNVL~  379 (381)
                      +. .         |      . |       +.||-||.-.-  -|+--++++
T Consensus        89 ip~~~~~~~~~~~~~~~~~R~~wr~l~~~a~~DPlNp~~~~~~~g~~~S~l~  140 (145)
T d3c8da1          89 IPTERDDIFSAPSPDRLELREGWRKLLPQAIADPLNPQSWKGGLGHAVSALE  140 (145)
T ss_dssp             EEESCCSTTCCC--CHHHHHHHHHHHGGGCBCCTTCSSEECCSSSSCEEEEE
T ss_pred             EecCcccCCCcCCccHHHHHHHHHHhhhcccCCCCCCCCCcCCCCCcccccc
Confidence            85 1         1      1 2       57999996542  355556665