Citrus Sinensis ID: 016851

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-
MSFARNYRQQGGTYHDRHWSSFNRDNCSSNSYNNYNYNRSWNDNHVRNYNNFHSYSGKFREHYQYDNPSYITASYVQPNNAPSFKRRKFSASAWGDSARNYLQVPNEYETAVSSSNKTLVPPVSISNIEVSTSMSCKRDRSKLEDDEPVFMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKLGLSQTVLVNLALNLVSEGLRSSLWLQFKPNHIAAGAAYLAAKFLNWDLAAYQNIWHEFQTTPAILQDVAQQLMELF
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEccHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccccccccccEEEcccHHHHHHHHHHHHHHc
cccHEEcccccccccccccccccccccccccccccccEEEcccccccccccccccccccHHccccccccccccccccccccccHHHcccccccccccccEEEEccccHccccccccccccccccccccccccccccccccccccccccEEEcHHHHHcccccccccccHHHHHHHHHHHHHHHHHHccHccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccEEEEccccHHHHHHHHHHcccHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHHHHHcccccccccHHHHccccHHHHHHHHHHHHHHc
msfarnyrqqggtyhdrhwssfnrdncssnsynnynynrswndnhvrnynnfhsysgkfrehyqydnpsyitasyvqpnnapsfkrrkfsasawgdsarnylqvpneyETAVsssnktlvppvsisnievstsmsckrdrskleddepvfmsrdeierfspsrkdGIDALRETHLRYSYCAFIQNLglrlelpqttiGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAkseetprplnDVLRASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFelnvqhpydpLTSILNKLGLSQTVLVNLALNLVSEGLRsslwlqfkpnhIAAGAAYLAAKFLNWDLAAYQNIWHEFQTTPAILQDVAQQLMELF
msfarnyrqqggtyhdrhwssfnrDNCSSNSYNNYNYNRSWNDNHVRNYNNFHSYSGKFREHYQYDNPSYITASYVQPNNAPSFKRRKFSASAWGDSARNYLQVPNEYETAvsssnktlvppvsisnievstsmsckrdrskleddepvfmsrdeierfspsrkdGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKLGLSQTVLVNLALNLVSEGLRSSLWLQFKPNHIAAGAAYLAAKFLNWDLAAYQNIWHEFQTTPAILQDVAQQLMELF
MSFARNYRQQGGTYHDRHWSSFnrdncssnsynnynynrswndnHVRNYNNFHSYSGKFREHYQYDNPSYITASYVQPNNAPSFKRRKFSASAWGDSARNYLQVPNEYETAVSSSNKTLVPPVSISNIEVSTSMSCKRDRSKLEDDEPVFMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRfiiataalflaaKSEETPRPLNDVLRASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKLGLSQTVLVNLALNLVSEGLRSSLWLQFKPNHIaagaaylaaKFLNWDLAAYQNIWHEFQTTPAILQDVAQQLMELF
****************RHWSSFNRDNCSSNSYNNYNYNRSWNDNHVRNYNNFHSYSGKFREHYQYDNPSYITASYVQ****************W******YL****************************************************************IDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAK********NDVLRASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKLGLSQTVLVNLALNLVSEGLRSSLWLQFKPNHIAAGAAYLAAKFLNWDLAAYQNIWHEFQTTPAILQDVA*******
*****************HWSSFNR***************************************************************************************************************************PVFMSRDE**************LRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKLGLSQTVLVNLALNLVSEGLRSSLWLQFKPNHIAAGAAYLAAKFLNWDLAAYQNIWHEFQTTPAILQDVAQQLMELF
*************YHDRHWSSFNRDNCSSNSYNNYNYNRSWNDNHVRNYNNFHSYSGKFREHYQYDNPSYITASYVQPNNAPSFKRRKFSASAWGDSARNYLQVPNEY********KTLVPPVSISNIEVS*************DDEPVFMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKLGLSQTVLVNLALNLVSEGLRSSLWLQFKPNHIAAGAAYLAAKFLNWDLAAYQNIWHEFQTTPAILQDVAQQLMELF
*SFARNYRQQGGTYHDRHWSSFNRDNCSSNSYNNYNYNRSWNDNHVRNYNNFHSYSGKFREHYQYDNPSYITASYVQPNNAPSFKRRKFSASAWGDSARNYLQVPNEYETAVSSSNKT****************************EPVFMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKLGLSQTVLVNLALNLVSEGLRSSLWLQFKPNHIAAGAAYLAAKFLNWDLAAYQNIWHEFQTTPAILQDVAQQLMELF
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSFARNYRQQGGTYHDRHWSSFNRDNCSSNSYNNYNYNRSWNDNHVRNYNNFHSYSGKFREHYQYDNPSYITASYVQPNNAPSFKRRKFSASAWGDSARNYLQVPNEYETAVSSSNKTLVPPVSISNIEVSTSMSCKRDRSKLEDDEPVFMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKLGLSQTVLVNLALNLVSEGLRSSLWLQFKPNHIAAGAAYLAAKFLNWDLAAYQNIWHEFQTTPAILQDVAQQLMELF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query381 2.2.26 [Sep-21-2011]
Q8GYM6 541 Cyclin-T1-4 OS=Arabidopsi yes no 0.608 0.428 0.5 2e-66
Q2QQS5 543 Cyclin-T1-4 OS=Oryza sati yes no 0.608 0.427 0.5 9e-66
Q9FKE6 579 Cyclin-T1-5 OS=Arabidopsi no no 0.608 0.400 0.5 1e-65
Q2RAC5 490 Cyclin-T1-3 OS=Oryza sati no no 0.608 0.473 0.5 3e-65
Q0E474 446 Cyclin-T1-1 OS=Oryza sati no no 0.608 0.520 0.446 4e-58
Q6Z7H3 630 Cyclin-T1-2 OS=Oryza sati no no 0.608 0.368 0.418 1e-52
Q56YF8 460 Cyclin-T1-2 OS=Arabidopsi no no 0.624 0.517 0.475 7e-52
Q8LBC0317 Cyclin-T1-3 OS=Arabidopsi no no 0.606 0.728 0.409 1e-47
Q9C8P7247 Putative cyclin-T1-1 OS=A no no 0.582 0.898 0.361 4e-35
Q5ZJP9 534 Cyclin-L1 OS=Gallus gallu yes no 0.587 0.419 0.311 8e-26
>sp|Q8GYM6|CCT14_ARATH Cyclin-T1-4 OS=Arabidopsis thaliana GN=CYCT1-4 PE=1 SV=1 Back     alignment and function desciption
 Score =  253 bits (645), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 117/234 (50%), Positives = 161/234 (68%), Gaps = 2/234 (0%)

Query: 150 FMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFV 209
           +  R EIE  SPSR D ID  +ET+LR SYC F+Q+LG+RL++PQ TI TA++ CHRFF+
Sbjct: 34  YFGRKEIEENSPSRLDSIDLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFI 93

Query: 210 RRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASSELYHKQNITLLSYLLPIDWFEQ 269
           R+SHA +DR  IAT  +FLA K EETPRPL DV+  S E+ HK++ T    +   + +EQ
Sbjct: 94  RQSHARNDRRTIATVCMFLAGKVEETPRPLKDVIVVSYEIIHKKDPTTAQKIKQKEVYEQ 153

Query: 270 YRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKLGLSQTVLVNLALNLVSEGLRSSLW 329
            +E ++  E+++L+TL F+ NV HPY PL   + K  ++Q  L  +A N V++GLR+SL 
Sbjct: 154 QKELILNGEKIVLSTLGFDFNVYHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLC 213

Query: 330 LQFKPNHIAAGAAYLAAKFLNWDLAAYQNI--WHEFQTTPAILQDVAQQLMELF 381
           LQFKP+HIAAGA +LAAKFL   L +      W EF  TP  L+DV+ Q++EL+
Sbjct: 214 LQFKPHHIAAGAIFLAAKFLKVKLPSDGEKVWWQEFDVTPRQLEDVSNQMLELY 267

Arabidopsis thaliana (taxid: 3702)
>sp|Q2QQS5|CCT14_ORYSJ Cyclin-T1-4 OS=Oryza sativa subsp. japonica GN=CYCT1-1 PE=2 SV=1 Back     alignment and function description
>sp|Q9FKE6|CCT15_ARATH Cyclin-T1-5 OS=Arabidopsis thaliana GN=CYCT1-5 PE=2 SV=2 Back     alignment and function description
>sp|Q2RAC5|CCT13_ORYSJ Cyclin-T1-3 OS=Oryza sativa subsp. japonica GN=CYCT1-3 PE=3 SV=2 Back     alignment and function description
>sp|Q0E474|CCT11_ORYSJ Cyclin-T1-1 OS=Oryza sativa subsp. japonica GN=CYCT1-1 PE=3 SV=2 Back     alignment and function description
>sp|Q6Z7H3|CCT12_ORYSJ Cyclin-T1-2 OS=Oryza sativa subsp. japonica GN=CYCT1_2 PE=2 SV=2 Back     alignment and function description
>sp|Q56YF8|CCT12_ARATH Cyclin-T1-2 OS=Arabidopsis thaliana GN=CYCT1-2 PE=2 SV=2 Back     alignment and function description
>sp|Q8LBC0|CCT13_ARATH Cyclin-T1-3 OS=Arabidopsis thaliana GN=CYCT1-3 PE=1 SV=2 Back     alignment and function description
>sp|Q9C8P7|CCT11_ARATH Putative cyclin-T1-1 OS=Arabidopsis thaliana GN=CYCT1-1 PE=3 SV=1 Back     alignment and function description
>sp|Q5ZJP9|CCNL1_CHICK Cyclin-L1 OS=Gallus gallus GN=CCNL1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query381
255552333403 Cyclin-L1, putative [Ricinus communis] g 0.984 0.930 0.710 1e-145
225432602363 PREDICTED: cyclin-T1-4 [Vitis vinifera] 0.952 1.0 0.724 1e-143
449444781378 PREDICTED: cyclin-T1-4-like [Cucumis sat 0.984 0.992 0.645 1e-136
449512870378 PREDICTED: LOW QUALITY PROTEIN: cyclin-T 0.984 0.992 0.643 1e-135
147794477443 hypothetical protein VITISV_012971 [Viti 0.926 0.796 0.714 1e-135
356536023372 PREDICTED: cyclin-T1-4-like [Glycine max 0.973 0.997 0.664 1e-125
224099767323 predicted protein [Populus trichocarpa] 0.818 0.965 0.688 1e-123
297737019315 unnamed protein product [Vitis vinifera] 0.813 0.984 0.689 1e-117
357444297433 Cyclin T1 [Medicago truncatula] gi|35548 0.971 0.854 0.626 1e-117
37703718372 cyclin T1 [Medicago truncatula] 0.971 0.994 0.626 1e-117
>gi|255552333|ref|XP_002517211.1| Cyclin-L1, putative [Ricinus communis] gi|223543846|gb|EEF45374.1| Cyclin-L1, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  520 bits (1338), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 280/394 (71%), Positives = 322/394 (81%), Gaps = 19/394 (4%)

Query: 1   MSFA-RNYRQQGGTYHDRHWSSFNRDNCSSNSYNNYNYNRSWNDNHVRNYNNFH------ 53
           MSFA RNY  QG T HD    +FNR+N ++N   N N +R  +++    +N  +      
Sbjct: 16  MSFAARNYHSQGSTLHDDRCHTFNRNNYNNNRNRNINTHRHNSNSTNNTHNYNYNYNYNN 75

Query: 54  ------SYSGKFREHYQYDNPSYITASYVQPNNAPSFKRRKFSASAWGDSARNYLQVPNE 107
                  +SGKFR+H   +N +Y+      PN+APS KRRKFSA  W D  R ++Q P  
Sbjct: 76  NWNYNHDFSGKFRDHIDSENNNYV----YPPNDAPSLKRRKFSAGTWEDVRREFVQ-PVS 130

Query: 108 YETAVSSSNKTLVPPVSISNIEVSTSMSCKRDRSKLEDDEPVFMSRDEIERFSPSRKDGI 167
           YE+A SS+   LVP ++ SN E STS SCKRDRSKLEDD+PVFMSRDEIER SPSRKDGI
Sbjct: 131 YESAASSAYNNLVP-LTRSNAETSTSTSCKRDRSKLEDDDPVFMSRDEIERHSPSRKDGI 189

Query: 168 DALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALF 227
           DALRE+HLRYSYCAF+QNLG+RL+LPQTTIGTAMVLCHRFFVRRSHACHDRF+IATAALF
Sbjct: 190 DALRESHLRYSYCAFLQNLGVRLDLPQTTIGTAMVLCHRFFVRRSHACHDRFLIATAALF 249

Query: 228 LAAKSEETPRPLNDVLRASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNF 287
           LA+KSEETPRPLN++LRASSE+ HKQ+++LLSYLLP+DWFEQYRERVIEAEQMILTTLNF
Sbjct: 250 LASKSEETPRPLNNMLRASSEILHKQDMSLLSYLLPVDWFEQYRERVIEAEQMILTTLNF 309

Query: 288 ELNVQHPYDPLTSILNKLGLSQTVLVNLALNLVSEGLRSSLWLQFKPNHIAAGAAYLAAK 347
           ELNVQHPY PLTS+LNK+G SQTVLVNLALNL+SEGLRSSLWLQFKP+HIAAGAAYLAA+
Sbjct: 310 ELNVQHPYAPLTSVLNKIGFSQTVLVNLALNLISEGLRSSLWLQFKPHHIAAGAAYLAAR 369

Query: 348 FLNWDLAAYQNIWHEFQTTPAILQDVAQQLMELF 381
           FLN DLA YQNIW EFQTTPAI+QDVAQQLMELF
Sbjct: 370 FLNLDLACYQNIWQEFQTTPAIIQDVAQQLMELF 403

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225432602|ref|XP_002277920.1| PREDICTED: cyclin-T1-4 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449444781|ref|XP_004140152.1| PREDICTED: cyclin-T1-4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449512870|ref|XP_004164165.1| PREDICTED: LOW QUALITY PROTEIN: cyclin-T1-4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|147794477|emb|CAN71612.1| hypothetical protein VITISV_012971 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356536023|ref|XP_003536540.1| PREDICTED: cyclin-T1-4-like [Glycine max] Back     alignment and taxonomy information
>gi|224099767|ref|XP_002311610.1| predicted protein [Populus trichocarpa] gi|222851430|gb|EEE88977.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297737019|emb|CBI26220.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357444297|ref|XP_003592426.1| Cyclin T1 [Medicago truncatula] gi|355481474|gb|AES62677.1| Cyclin T1 [Medicago truncatula] Back     alignment and taxonomy information
>gi|37703718|gb|AAR01224.1| cyclin T1 [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query381
TAIR|locus:2122975 541 CYCT1;4 [Arabidopsis thaliana 0.664 0.467 0.419 4.4e-52
TAIR|locus:2153358 590 AT5G45190 [Arabidopsis thalian 0.664 0.428 0.402 1.6e-47
TAIR|locus:2122940 460 CYCT1;2 [Arabidopsis thaliana 0.624 0.517 0.426 7.9e-46
TAIR|locus:2196919317 CYCT1;3 "cyclin T 1;3" [Arabid 0.603 0.725 0.363 4.8e-39
TAIR|locus:2008698247 CYCT1;1 "cyclin T1;1" [Arabido 0.587 0.906 0.333 2.4e-28
DICTYBASE|DDB_G0286617 405 cycK "putative K-type cyclin" 0.564 0.530 0.305 1.6e-24
UNIPROTKB|C9JPL0 428 CCNL1 "Cyclin-L1" [Homo sapien 0.590 0.525 0.293 7.1e-20
RGD|620864 527 Ccnl1 "cyclin L1" [Rattus norv 0.727 0.525 0.269 8.5e-20
UNIPROTKB|Q9R1Q2 527 Ccnl1 "Cyclin-L1" [Rattus norv 0.727 0.525 0.269 8.5e-20
UNIPROTKB|F1MIJ6 520 CCNL2 "Uncharacterized protein 0.595 0.436 0.278 1.4e-19
TAIR|locus:2122975 CYCT1;4 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
 Identities = 107/255 (41%), Positives = 154/255 (60%)

Query:   129 EVSTSMSCKRDRSKLEDDEPVFMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGL 188
             E   S   +    K ++    +  R EIE  SPSR D ID  +ET+LR SYC F+Q+LG+
Sbjct:    13 ESGVSSYSRNSNEKQDEVARWYFGRKEIEENSPSRLDSIDLKKETYLRKSYCTFLQDLGM 72

Query:   189 RLELPQTTIGTAMVLCHRFFVRRSHACHDRXXXXXXXXXXXXKSEETPRPLNDVLRASSE 248
             RL++PQ TI TA++ CHRFF+R+SHA +DR            K EETPRPL DV+  S E
Sbjct:    73 RLKVPQVTIATAIIFCHRFFIRQSHARNDRRTIATVCMFLAGKVEETPRPLKDVIVVSYE 132

Query:   249 LYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKLGLS 308
             + HK++ T    +   + +EQ +E ++  E+++L+TL F+ NV HPY PL   + K  ++
Sbjct:   133 IIHKKDPTTAQKIKQKEVYEQQKELILNGEKIVLSTLGFDFNVYHPYKPLVEAIKKFKVA 192

Query:   309 QTVLVNLALNLVSEGLRSSLWLQFKPNHIXXXXXXXXXKFLNWDLAAY-QNIW-HEFQTT 366
             Q  L  +A N V++GLR+SL LQFKP+HI         KFL   L +  + +W  EF  T
Sbjct:   193 QNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGEKVWWQEFDVT 252

Query:   367 PAILQDVAQQLMELF 381
             P  L+DV+ Q++EL+
Sbjct:   253 PRQLEDVSNQMLELY 267
GO:0000079 "regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=IEA
GO:0004693 "cyclin-dependent protein serine/threonine kinase activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
GO:0019901 "protein kinase binding" evidence=IEA
GO:0051726 "regulation of cell cycle" evidence=ISS
GO:0009615 "response to virus" evidence=IEP
GO:0010090 "trichome morphogenesis" evidence=IMP
GO:0048366 "leaf development" evidence=IGI
GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA
GO:0006366 "transcription from RNA polymerase II promoter" evidence=RCA
GO:0008284 "positive regulation of cell proliferation" evidence=RCA
TAIR|locus:2153358 AT5G45190 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122940 CYCT1;2 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2196919 CYCT1;3 "cyclin T 1;3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008698 CYCT1;1 "cyclin T1;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0286617 cycK "putative K-type cyclin" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|C9JPL0 CCNL1 "Cyclin-L1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|620864 Ccnl1 "cyclin L1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q9R1Q2 Ccnl1 "Cyclin-L1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1MIJ6 CCNL2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query381
COG5333297 COG5333, CCL1, Cdk activating kinase (CAK)/RNA pol 3e-22
pfam00134127 pfam00134, Cyclin_N, Cyclin, N-terminal domain 5e-13
cd0004388 cd00043, CYCLIN, Cyclin box fold 1e-10
smart0038583 smart00385, CYCLIN, domain present in cyclins, TFI 1e-07
TIGR00569305 TIGR00569, ccl1, cyclin ccl1 1e-05
cd0004388 cd00043, CYCLIN, Cyclin box fold 2e-04
COG1405285 COG1405, SUA7, Transcription initiation factor TFI 4e-04
smart0038583 smart00385, CYCLIN, domain present in cyclins, TFI 0.003
>gnl|CDD|227640 COG5333, CCL1, Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information 
 Score = 95.2 bits (237), Expect = 3e-22
 Identities = 58/196 (29%), Positives = 95/196 (48%), Gaps = 26/196 (13%)

Query: 172 ETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAK 231
           E +L   Y   I +L  RL LPQT + TA++   RF+++ S      + + T  ++LA K
Sbjct: 41  ELNLVIYYLKLIMDLCTRLNLPQTVLATAILFFSRFYLKNSVEEISLYSVVTTCVYLACK 100

Query: 232 SEETPRPLNDVLRASSELYHKQNITLLSYLLPIDWFEQY---RERVIEAEQMILTTLNFE 288
            E+TPR                +I++ S+     W E+    RER++E E  +L  L+F+
Sbjct: 101 VEDTPR----------------DISIESFEARDLWSEEPKSSRERILEYEFELLEALDFD 144

Query: 289 LNVQHPYDPLTSILNKLGLSQ-TVLVNLALNLVSEGLRSSLWLQFKPNHIAAGAAYLAAK 347
           L+V HPY  L   L  L       L+ +A  ++++ LR+ L L + P+ IA  A  +A +
Sbjct: 145 LHVHHPYKYLEGFLKDLQEKDKYKLLQIAWKIINDALRTDLCLLYPPHIIALAALLIACE 204

Query: 348 FLN------WDLAAYQ 357
            L        D  +Y+
Sbjct: 205 VLGMPIIKLLDFVSYE 220

Length = 297
>gnl|CDD|215740 pfam00134, Cyclin_N, Cyclin, N-terminal domain Back     alignment and domain information
>gnl|CDD|238003 cd00043, CYCLIN, Cyclin box fold Back     alignment and domain information
>gnl|CDD|214641 smart00385, CYCLIN, domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>gnl|CDD|129660 TIGR00569, ccl1, cyclin ccl1 Back     alignment and domain information
>gnl|CDD|238003 cd00043, CYCLIN, Cyclin box fold Back     alignment and domain information
>gnl|CDD|224323 COG1405, SUA7, Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>gnl|CDD|214641 smart00385, CYCLIN, domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 381
KOG0834323 consensus CDK9 kinase-activating protein cyclin T 100.0
KOG0835 367 consensus Cyclin L [General function prediction on 100.0
TIGR00569305 ccl1 cyclin ccl1. University). 100.0
KOG0794264 consensus CDK8 kinase-activating protein cyclin C 100.0
KOG0655408 consensus G1/S-specific cyclin E [Cell cycle contr 99.97
COG5333297 CCL1 Cdk activating kinase (CAK)/RNA polymerase II 99.95
KOG0656335 consensus G1/S-specific cyclin D [Cell cycle contr 99.93
KOG0653391 consensus Cyclin B and related kinase-activating p 99.9
COG5024440 Cyclin [Cell division and chromosome partitioning] 99.87
PRK00423310 tfb transcription initiation factor IIB; Reviewed 99.84
KOG2496325 consensus Cdk activating kinase (CAK)/RNA polymera 99.84
KOG0654359 consensus G2/Mitotic-specific cyclin A [Cell cycle 99.77
PF00134127 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR 99.77
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 99.55
KOG1597308 consensus Transcription initiation factor TFIIB [T 99.54
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 99.42
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 99.29
PF02984118 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR 99.0
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 98.59
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 98.48
KOG1598 521 consensus Transcription initiation factor TFIIIB, 98.27
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 98.26
PF08613149 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eu 98.06
KOG4164497 consensus Cyclin ik3-1/CABLES [Cell cycle control, 98.02
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 97.79
PRK00423310 tfb transcription initiation factor IIB; Reviewed 97.29
PF00134127 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR 95.81
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 95.16
KOG1597308 consensus Transcription initiation factor TFIIB [T 92.89
KOG1674218 consensus Cyclin [General function prediction only 92.16
TIGR00569 305 ccl1 cyclin ccl1. University). 89.35
PF01857135 RB_B: Retinoblastoma-associated protein B domain; 88.38
PF02984118 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR 87.46
PF08613149 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eu 81.99
>KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=3.3e-45  Score=354.08  Aligned_cols=230  Identities=38%  Similarity=0.672  Sum_probs=215.9

Q ss_pred             CCCccccHHHHHHhCCCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcCccchhhhhHHH
Q 016851          146 DEPVFMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAA  225 (381)
Q Consensus       146 ~~~~yft~~e~~~~sPs~~~~i~~~~e~~~R~~~v~~I~~v~~~L~L~~~t~~~Ai~~fdRF~~~~si~~~~~~lva~ac  225 (381)
                      ..+|||+++++++.+||+..|++.+.|...|..++.||+++|.+|++++.|+++|++||||||+.+++++++++.||++|
T Consensus         9 ~~~w~~s~e~~~~~tpSr~~g~~~~~E~~~r~~~~~fI~elg~~L~~~~~ti~tA~~~~hRFy~~~s~~~~~~~~vA~sc   88 (323)
T KOG0834|consen    9 TSRWYFSKEQLEENTPSRRDGIDLKKELRLRQEGAKFIQELGVRLKMPQKTIATAIVIFHRFYMFHSFKKFDPYTVAASC   88 (323)
T ss_pred             ccccccCHHHHccCChhhccCCchhHHHHHHHHHHHHHHHHHHHcCCCccchhhhhhhhhhhhhhcccccCcHHHHHHHH
Confidence            45799999999989999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhccCCCCChHHHHHHHHHHHhhhhhhhhcccCChhHHhHHHHHHHHHHHHHHHHcCcccccCChHHHHHHHHHHc
Q 016851          226 LFLAAKSEETPRPLNDVLRASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKL  305 (381)
Q Consensus       226 LfLA~K~EE~p~~l~dii~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~Il~~E~~IL~~L~FdL~v~tP~~~L~~~l~~l  305 (381)
                      ||||+|+||+|++++||+.++++.+++.+      ....+.|+..++.|+.+|++||++|+|||.+.+||.||.+|++.+
T Consensus        89 lfLAgKvEetp~kl~dIi~~s~~~~~~~~------~~~~~~~~~~~~~Iv~~E~~lL~tl~Fdl~v~hPy~~ll~~~k~l  162 (323)
T KOG0834|consen   89 LFLAGKVEETPRKLEDIIKVSYRYLNPKD------LELEEVYWELKERIVQLELLLLETLGFDLNVEHPYKYLLKYLKKL  162 (323)
T ss_pred             HHHHhhcccCcccHHHHHHHHHHHcCccc------ccHHHHHHHHHHHHHHHHHHHHHHccCceeccCchHHHHHHHHHh
Confidence            99999999999999999999999887644      234567999999999999999999999999999999999999999


Q ss_pred             CCCHH---HHHHHHHHHHHHHhccccccCcCHHHHHHHHHHHHHHHcCCCccc--hhhhhhhcc--cCHHHHHHHHHHHH
Q 016851          306 GLSQT---VLVNLALNLVSEGLRSSLWLQFKPNHIAAGAAYLAAKFLNWDLAA--YQNIWHEFQ--TTPAILQDVAQQLM  378 (381)
Q Consensus       306 ~~~~~---~i~~lA~~ll~dsl~t~~~L~y~Ps~IAaAaI~lA~~~~~~~l~~--~~~w~~~~~--~~~~~I~e~~~~Ll  378 (381)
                      +....   .+.+.||.+++|++.+.+||+|+|.+||+|||++|+++.++..+.  .+.||+.++  ++.++|++++.+++
T Consensus       163 ~~~~~~~~~~a~~Aw~~~nD~~~t~~cL~y~p~~IAva~i~lA~~~~~~~~~~~~~~~w~~~~d~~vt~e~l~~i~~~~l  242 (323)
T KOG0834|consen  163 KADENLKQPLAQAAWNFVNDSLRTTLCLQYSPHSIAVACIHLAAKLLGVELPSDTDKRWWREFDETVTNELLDDICHEFL  242 (323)
T ss_pred             hhhhhccccHHHHHHHHhchhheeeeeEeecCcEEEeehhhHHHHHcCCCCCCCcccchhhhhcccCCHHHHHHHHHHHH
Confidence            87654   589999999999999999999999999999999999999997664  347999999  99999999999999


Q ss_pred             hhC
Q 016851          379 ELF  381 (381)
Q Consensus       379 ~Ly  381 (381)
                      ++|
T Consensus       243 ~~y  245 (323)
T KOG0834|consen  243 DLY  245 (323)
T ss_pred             HHH
Confidence            987

>KOG0835 consensus Cyclin L [General function prediction only] Back     alignment and domain information
>TIGR00569 ccl1 cyclin ccl1 Back     alignment and domain information
>KOG0794 consensus CDK8 kinase-activating protein cyclin C [Transcription] Back     alignment and domain information
>KOG0655 consensus G1/S-specific cyclin E [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5333 CCL1 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0656 consensus G1/S-specific cyclin D [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0653 consensus Cyclin B and related kinase-activating proteins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5024 Cyclin [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>KOG2496 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG0654 consensus G2/Mitotic-specific cyclin A [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>KOG1597 consensus Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>KOG1598 consensus Transcription initiation factor TFIIIB, Brf1 subunit [Transcription] Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG4164 consensus Cyclin ik3-1/CABLES [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>KOG1597 consensus Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>KOG1674 consensus Cyclin [General function prediction only] Back     alignment and domain information
>TIGR00569 ccl1 cyclin ccl1 Back     alignment and domain information
>PF01857 RB_B: Retinoblastoma-associated protein B domain; InterPro: IPR002719 Retinoblastoma-like and retinoblastoma-associated proteins may have a function in cell cycle regulation Back     alignment and domain information
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query381
2i53_A258 Crystal Structure Of Cyclin K Length = 258 2e-16
2ivx_A257 Crystal Structure Of Human Cyclin T2 At 1.8 A Resol 3e-15
2w2h_A264 Structural Basis Of Transcription Activation By The 9e-14
3tnh_B259 Cdk9CYCLIN T IN COMPLEX WITH CAN508 Length = 259 2e-13
3mi9_B266 Crystal Structure Of Hiv-1 Tat Complexed With Human 4e-13
2pk2_A 358 Cyclin Box Structure Of The P-Tefb Subunit Cyclin T 4e-13
3blh_B260 Crystal Structure Of Human Cdk9CYCLINT1 Length = 26 1e-12
3rgf_B285 Crystal Structure Of Human Cdk8CYCC Length = 285 5e-07
>pdb|2I53|A Chain A, Crystal Structure Of Cyclin K Length = 258 Back     alignment and structure 
Iteration: 1

 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 107/233 (45%), Gaps = 19/233 (8%)
Query: 160 SPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRX 219
           +PS+ +G+D   E   R     FI ++G RL L   T+ T ++  HRF++  S     R 
Sbjct: 25  TPSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRY 84
Query: 220 XXXXXXXXXXXKSEETPRPLNDVLRASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQ 279
                      K EETP+   D+++ +  L +                +  +E V+  E+
Sbjct: 85  VTGACCLFLAGKVEETPKKCKDIIKTARSLLNDVQFGQFG--------DDPKEEVMVLER 136
Query: 280 MILTTLNFELNVQHPYDPLTSILNKL-GLSQTV--LVNLALNLVSEGLRSSLWLQFKPNH 336
           ++L T+ F+L V+HPY  L     +L G    +  LV +A   V++ L ++L LQ++P  
Sbjct: 137 ILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEI 196
Query: 337 IXXXXXXXXXKFLNWDL------AAYQNIWHEF-QTTPA-ILQDVAQQLMELF 381
           I         +   +++        Y+  W +F Q  P  +L+D+  Q+++L+
Sbjct: 197 IAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQDVPVDVLEDICHQILDLY 249
>pdb|2IVX|A Chain A, Crystal Structure Of Human Cyclin T2 At 1.8 A Resolution (Casp Target) Length = 257 Back     alignment and structure
>pdb|2W2H|A Chain A, Structural Basis Of Transcription Activation By The Cyclin T1-Tat-Tar Rna Complex From Eiav Length = 264 Back     alignment and structure
>pdb|3TNH|B Chain B, Cdk9CYCLIN T IN COMPLEX WITH CAN508 Length = 259 Back     alignment and structure
>pdb|3MI9|B Chain B, Crystal Structure Of Hiv-1 Tat Complexed With Human P-Tefb Length = 266 Back     alignment and structure
>pdb|2PK2|A Chain A, Cyclin Box Structure Of The P-Tefb Subunit Cyclin T1 Derived From A Fusion Complex With Eiav Tat Length = 358 Back     alignment and structure
>pdb|3BLH|B Chain B, Crystal Structure Of Human Cdk9CYCLINT1 Length = 260 Back     alignment and structure
>pdb|3RGF|B Chain B, Crystal Structure Of Human Cdk8CYCC Length = 285 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query381
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 3e-61
2pk2_A 358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 1e-58
2ivx_A257 Cyclin-T2; transcription regulation, cell division 9e-55
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 2e-53
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 3e-51
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 8e-50
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 4e-11
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 1e-10
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 2e-10
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 3e-10
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 5e-10
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 1e-09
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 9e-09
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 2e-08
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 7e-07
1ais_B200 TFB TFIIB, protein (transcription initiation facto 3e-06
1c9b_A207 General transcription factor IIB; protein-DNA comp 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 258 Back     alignment and structure
 Score =  197 bits (501), Expect = 3e-61
 Identities = 64/243 (26%), Positives = 119/243 (48%), Gaps = 20/243 (8%)

Query: 150 FMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFV 209
           +  + ++   +PS+ +G+D   E   R     FI ++G RL L   T+ T ++  HRF++
Sbjct: 16  YWDKKDLAH-TPSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYM 74

Query: 210 RRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASSELYHKQNITLLSYLLPIDWFEQ 269
             S     R++     LFLA K EETP+   D+++ +  L +              + + 
Sbjct: 75  FHSFKQFPRYVTGACCLFLAGKVEETPKKCKDIIKTARSLLNDVQ--------FGQFGDD 126

Query: 270 YRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKLGLSQ---TVLVNLALNLVSEGLRS 326
            +E V+  E+++L T+ F+L V+HPY  L     +L   +     LV +A   V++ L +
Sbjct: 127 PKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCT 186

Query: 327 SLWLQFKPNHIAAGAAYLAAKFLNWDL------AAYQNIWHEFQ--TTPAILQDVAQQLM 378
           +L LQ++P  IA    YLA +   +++        Y+  W +F       +L+D+  Q++
Sbjct: 187 TLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQDVPVDVLEDICHQIL 246

Query: 379 ELF 381
           +L+
Sbjct: 247 DLY 249
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Length = 358 Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Length = 257 Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 285 Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Length = 323 Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Length = 235 Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Length = 271 Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 306 Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Length = 252 Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Length = 257 Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Length = 260 Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Length = 254 Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Length = 269 Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Length = 345 Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 283 Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Length = 200 Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Length = 207 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query381
2ivx_A257 Cyclin-T2; transcription regulation, cell division 100.0
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 100.0
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 100.0
2pk2_A 358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 100.0
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 100.0
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 100.0
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 100.0
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 100.0
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 100.0
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 100.0
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 100.0
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 100.0
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 100.0
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 99.97
1c9b_A207 General transcription factor IIB; protein-DNA comp 99.97
1ais_B200 TFB TFIIB, protein (transcription initiation facto 99.94
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 99.89
4bbr_M345 Transcription initiation factor IIB; RNA polymeras 99.74
2pmi_B293 PHO85 cyclin PHO80, aminoglycoside anti; cyclin-de 97.73
1ais_B200 TFB TFIIB, protein (transcription initiation facto 97.66
1c9b_A207 General transcription factor IIB; protein-DNA comp 96.97
4bbr_M 345 Transcription initiation factor IIB; RNA polymeras 95.26
1zp2_A 235 RNA polymerase II holoenzyme cyclin-like subunit; 94.88
2b9r_A 269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 94.42
3rgf_B 285 Cyclin-C; protein kinase complex, transferase,tran 94.08
3h4c_A260 Transcription factor TFIIB-like; cyclin, transcrip 93.98
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 93.87
2cch_B 260 Cyclin A2, cyclin-A; complex(transferase/cell divi 93.7
2f2c_A 254 Cyclin homolog, V-cyclin; small molecule inhibitor 93.61
1g3n_C 257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 93.6
3g33_B 306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 93.04
1w98_B 283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 92.96
1jkw_A 323 Cyclin H; cell cycle, cell division, nuclear prote 92.81
2w96_A 271 G1/S-specific cyclin-D1; serine/threonine-protein 92.56
2ivx_A 257 Cyclin-T2; transcription regulation, cell division 91.95
1f5q_B 252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 90.96
2i53_A 258 Cyclin K; cell cycle, transcription, cyclin BOX, C 90.8
2pk2_A 358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 89.3
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
Probab=100.00  E-value=1.2e-44  Score=343.03  Aligned_cols=230  Identities=29%  Similarity=0.502  Sum_probs=208.5

Q ss_pred             CCccccHHHHHHhCCCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcCccchhhhhHHHH
Q 016851          147 EPVFMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAAL  226 (381)
Q Consensus       147 ~~~yft~~e~~~~sPs~~~~i~~~~e~~~R~~~v~~I~~v~~~L~L~~~t~~~Ai~~fdRF~~~~si~~~~~~lva~acL  226 (381)
                      ++||||++|++ .+||+.+|++++.|..+|..+++||.++|.+|+|+++|+++|++|||||++++++.+.++++||+|||
T Consensus         3 ~~w~~t~e~l~-~~ps~~~g~~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL   81 (257)
T 2ivx_A            3 SRWFFTREQLE-NTPSRRCGVEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTAL   81 (257)
T ss_dssp             GGGSCCHHHHH-SCHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHH
T ss_pred             CCeeecHHHHH-hChHhhcCCCHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHH
Confidence            57999999995 89999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhccCCCCChHHHHHHHHHHHhhhhhhhhcccCChhHHhHHHHHHHHHHHHHHHHcCcccccCChHHHHHHHHHHcC
Q 016851          227 FLAAKSEETPRPLNDVLRASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKLG  306 (381)
Q Consensus       227 fLA~K~EE~p~~l~dii~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~Il~~E~~IL~~L~FdL~v~tP~~~L~~~l~~l~  306 (381)
                      |||||+||+|+++++++.++..+.++....   .....+.|...+++|+.||+.||++|||+|.++||+.||.+|++.++
T Consensus        82 ~lA~K~EE~p~~l~d~~~~~~~~~~~~~~~---~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~  158 (257)
T 2ivx_A           82 FLAAKVEEQARKLEHVIKVAHACLHPLEPL---LDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQLVR  158 (257)
T ss_dssp             HHHHHHTTCCCCHHHHHHHHHHHHCTTSCC---CCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTT
T ss_pred             HHHhccccCCcCHHHHHHHHHHHhccCCCC---CCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHHHHHHHHhC
Confidence            999999999999999999988766543211   11234567778999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhc-cccccCcCHHHHHHHHHHHHHHHcCCCccc---hhhhhhhcc--cCHHHHHHHHHHHHhh
Q 016851          307 LSQTVLVNLALNLVSEGLR-SSLWLQFKPNHIAAGAAYLAAKFLNWDLAA---YQNIWHEFQ--TTPAILQDVAQQLMEL  380 (381)
Q Consensus       307 ~~~~~i~~lA~~ll~dsl~-t~~~L~y~Ps~IAaAaI~lA~~~~~~~l~~---~~~w~~~~~--~~~~~I~e~~~~Ll~L  380 (381)
                      .+.+ +.+.|++++++++. +..|+.|+|+.||+|||++|+.++|.++|.   .++||+.++  +++++|++|+++|+++
T Consensus       159 ~~~~-~~~~A~~~~~~sl~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~~~~~~~l~~~~~~i~~~  237 (257)
T 2ivx_A          159 ASKD-LAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTLELLDELTHEFLQI  237 (257)
T ss_dssp             CCHH-HHHHHHHHHHHHHHHCCGGGTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSSCCHHHHHHHHHHHHHH
T ss_pred             CCcH-HHHHHHHHHHhhhhcccHHHcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhCCCCCHHHHHHHHHHHHHH
Confidence            8875 88999999999984 788999999999999999999999988764   357999884  8999999999999998


Q ss_pred             C
Q 016851          381 F  381 (381)
Q Consensus       381 y  381 (381)
                      |
T Consensus       238 ~  238 (257)
T 2ivx_A          238 L  238 (257)
T ss_dssp             H
T ss_pred             H
Confidence            6
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B* Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei} Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 381
d2ivxa1143 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) 3e-39
d2i53a1144 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) 8e-39
d1jkwa1151 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo s 9e-27
d2i53a2110 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens 2e-17
d2ivxa2113 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapien 4e-16
d1jkwa2126 a.74.1.1 (A:162-287) Cyclin H (mcs2) {Human (Homo 9e-09
d1f5qb1141 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesviru 4e-08
d1w98b2140 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human 4e-06
d1g3nc1132 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma 4e-06
d1bu2a1127 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saim 6e-06
d1aisb198 a.74.1.2 (B:1108-1205) Transcription factor IIB (T 1e-04
d2cchb1128 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [T 1e-04
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Length = 143 Back     information, alignment and structure

class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Cyclin-T2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  134 bits (339), Expect = 3e-39
 Identities = 49/142 (34%), Positives = 78/142 (54%), Gaps = 4/142 (2%)

Query: 150 FMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFV 209
           F +R+++E  +PSR+ G++A +E   R      IQ +G RL + Q TI TA+V  HRF++
Sbjct: 6   FFTREQLEN-TPSRRCGVEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYM 64

Query: 210 RRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASSELYHKQNITLLSYLLPIDWFEQ 269
             S    ++ II++ ALFLAAK EE  R L  V++ +    H     L +     D + Q
Sbjct: 65  HHSFTKFNKNIISSTALFLAAKVEEQARKLEHVIKVAHACLHPLEPLLDTK---CDAYLQ 121

Query: 270 YRERVIEAEQMILTTLNFELNV 291
               ++  E ++L TL FE+ +
Sbjct: 122 QTRELVILETIMLQTLGFEITI 143
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Length = 144 Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Length = 151 Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Length = 110 Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Length = 113 Back     information, alignment and structure
>d1jkwa2 a.74.1.1 (A:162-287) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Length = 126 Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Length = 141 Back     information, alignment and structure
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Length = 140 Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Length = 132 Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Length = 127 Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Length = 98 Back     information, alignment and structure
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Length = 128 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query381
d2ivxa1143 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 99.97
d2i53a1144 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 99.96
d1jkwa1151 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 99.91
d1bu2a1127 Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} 99.84
d1g3nc1132 Viral cyclin {Kaposi's sarcoma-associated herpesvi 99.82
d2cchb1128 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 99.82
d1f5qb1141 Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] 99.82
d1w98b2140 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 99.81
d2i53a2110 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 99.74
d2ivxa2113 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 99.73
d1jkwa2126 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 99.04
d2cchb2124 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 98.86
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 98.69
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 98.62
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 98.39
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 98.39
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 98.33
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 98.11
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 98.01
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 97.98
d1w98b1130 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 97.25
d2ivxa2113 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 95.56
d2cchb1128 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 95.19
d1bu2a1127 Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} 94.71
d1g3nc1132 Viral cyclin {Kaposi's sarcoma-associated herpesvi 94.61
d1w98b2140 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 94.6
d1f5qb1141 Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] 94.46
d2ivxa1143 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 94.22
d2i53a1144 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 93.98
d1jkwa1151 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 93.74
d2i53a2110 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 87.55
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Cyclin-T2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.3e-30  Score=223.58  Aligned_cols=142  Identities=34%  Similarity=0.523  Sum_probs=128.5

Q ss_pred             CCCccccHHHHHHhCCCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcCccchhhhhHHH
Q 016851          146 DEPVFMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAA  225 (381)
Q Consensus       146 ~~~~yft~~e~~~~sPs~~~~i~~~~e~~~R~~~v~~I~~v~~~L~L~~~t~~~Ai~~fdRF~~~~si~~~~~~lva~ac  225 (381)
                      .++||||+++++ .+||+.+|++++.|..+|..+++||.++|.+|+||++|+++|++|||||++++++.++++++||+||
T Consensus         2 ~~~w~~t~~~l~-~~pS~~~gi~~~~E~~~R~~~~~~i~~~~~~l~l~~~t~~~A~~l~~Rf~~~~s~~~~~~~~va~ac   80 (143)
T d2ivxa1           2 SSRWFFTREQLE-NTPSRRCGVEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTA   80 (143)
T ss_dssp             CGGGSCCHHHHH-SCHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHH
T ss_pred             CCCCCCCHHHHH-hCcccccCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCccccCHHHHHHHH
Confidence            357999999996 6999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhccCCCCChHHHHHHHHHHHhhhhhhhhcccCChhHHhHHHHHHHHHHHHHHHHcCccccc
Q 016851          226 LFLAAKSEETPRPLNDVLRASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNV  291 (381)
Q Consensus       226 LfLA~K~EE~p~~l~dii~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~Il~~E~~IL~~L~FdL~v  291 (381)
                      ||||||+||+++++++++.++..+..+....   .....+.++.++++|+.||+.||++|||||.|
T Consensus        81 l~LA~K~eE~~~~~~~ii~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~E~~iL~~L~Fdl~V  143 (143)
T d2ivxa1          81 LFLAAKVEEQARKLEHVIKVAHACLHPLEPL---LDTKCDAYLQQTRELVILETIMLQTLGFEITI  143 (143)
T ss_dssp             HHHHHHHTTCCCCHHHHHHHHHHHHCTTSCC---CCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred             HHHHHHhccccccHHHHHHHHHHHhcccchh---hhhchhhhHHHHHHHHHHHHHHHHHcCCeeeC
Confidence            9999999999999999999988776543321   12235678889999999999999999999975
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Back     information, alignment and structure
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Back     information, alignment and structure
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa2 a.74.1.1 (A:162-287) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cchb2 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1w98b1 a.74.1.1 (B:228-357) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Back     information, alignment and structure
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure