Citrus Sinensis ID: 016859

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-
MLIQSSAPTSVEAAMTFAPSHGEQDLLCKWRPTERWKGYAECSELPKEVSELLIASNISENSGLNLVKRRKIQKNSVIVFPVEAETDEVRVEEGSSKSQVEYDNSVVIALPAPTSIVGSNKELRSKNIRSSKSKMGVGCCNRNTEGSDISNSDISRLEVLDEDPSAREFCVSVLRSNGLLGAVGECSVRSVASGEVSGTGHEISVIQSCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCSNLNSNVSQENSFLKSPNNSWMYGKPRSEMGRIALMLKYPEPYTSRVRIGESYQAEVPDWSDQISSNLDSFSEPLEMDPAETVGLNVQFSNQFSKPDSISNWLQCQEVLTNNDTNVCVEGTKCGKWRR
ccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccc
cccccccccHHHHccccccccccccEcccccccccccccccccccccccccccEEEcccccccccEEEEEHcccccEEEEEccccccccEEcccccccccEEccccEcccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccEccccccccccccccccccccccccHHcEEccccccccHEEEEccccccccEEccccccccccccccccccHcccccccccccccccHHHcccccccccccccHHHHHHcccccccccEEEcccEEEEcccccccccccccccccccccccHHHcccccccccccccccccccEEEEEEEccccccccccccEEEccccc
mliqssaptsVEAAMtfapshgeqdllckwrpterwkgyaecseLPKEVSELLIASNisensglnLVKRRKIqknsvivfpveaetdevrveegssksqveydnsvvialpaptsivgsnkelrsknirsskskmgvgccnrntegsdisnsdisrlevldedpsaREFCVSVLRSNgllgavgecsvrsvasgevsgtgHEISVIQScklcgkadntstmllcdycdeafhpsccnprikilptdnwlcqccsnlnsnvsqensflkspnnswmygkprsemGRIALMlkypepytsrvrigesyqaevpdwsdqissnldsfseplemdpaetvglnvqfsnqfskpdsisNWLQCQEVltnndtnvcvegtkcgkwrr
mliqssaptsvEAAMtfapshgeqdlLCKWRPTERWKGYAECSELPKEVSELLIASnisensglnlvkrrkiqknsvivfpveaetdevrveegssksqveydnSVVIAlpaptsivgsnkelrsknirsskskmgvgccnrntegsdisnsdisRLEVLDEDPSAREFCVSVLRSNGLLGAVGECSVRSVASGEVSGTGHEISVIQSCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCSNLNSNVSQENSflkspnnswmygkPRSEMGRIALMLKYPEPYTSRVRIGESYQAEVPDWSDQISSNLDSFSEPLEMDPAETVGLNVQFSNQFSKPDSISNWLQCQEvltnndtnvcvegtkcgkwrr
MLIQSSAPTSVEAAMTFAPSHGEQDLLCKWRPTERWKGYAECSELPKEVSELLIASNISENSGLNLVKRRKIQKNSVIVFPVEAETDEVRVEEGSSKSQVEYDNSVVIALPAPTSIVGSNKELRSKNIRSSKSKMGVGCCNRNTEGSDISNSDISRLEVLDEDPSAREFCVSVLRSNGLLGAVGECSVRSVASGEVSGTGHEISVIQSCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCSNLNSNVSQENSFLKSPNNSWMYGKPRSEMGRIALMLKYPEPYTSRVRIGESYQAEVPDWSDQISSNLDSFSEPLEMDPAETVGLNVQFSNQFSKPDSISNWLQCQEVLTNNDTNVCVEGTKCGKWRR
***********************QDLLCKWRPTERWKGYAECSELPKEVSELLIASNISENSGLNLVKRRKIQKNSVIVFPVE*********************SVVIAL********************************************************REFCVSVLRSNGLLGAVGECSVRSVASGEVSGTGHEISVIQSCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCSNLNS***************WMY******MGRIALMLKYPEPYTSRVRIGESY*******************************LNVQF*******DSISNWLQCQEVLTNNDTNVCVEGTKCG****
***************TFAPSHGEQDL*CKWR****************************************************************************************************************************************************************************SVIQSCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCS************************************************************************PLEMDPAETV****************SNWLQCQEVLTNNDTNVCVEGTKCGKWRR
***********EAAMTFAPSHGEQDLLCKWRPTERWKGYAECSELPKEVSELLIASNISENSGLNLVKRRKIQKNSVIVFPVEAE***************EYDNSVVIALPAPTSIVGSNKELRSKNIRSSKSKMGVGCCNRNTEGSDISNSDISRLEVLDEDPSAREFCVSVLRSNGLLGAVGECSVRS***********EISVIQSCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCSNLNSNVSQENSFLKSPNNSWMYGKPRSEMGRIALMLKYPEPYTSRVRIGESYQAEVPDWSDQISSNLDSFSEPLEMDPAETVGLNVQFSNQFSKPDSISNWLQCQEVLTNNDTNVCVEGTKCGKWRR
*****SAPTSVEAAMTFAPSHGEQDLLCKWRPTERWKGYAECSELPKEVSELLIASNISENSGLNLVKRRKIQKNSVIVFPVEAETDEVRVEEGSSKSQVEYDNSVVIALPAPTSIV*********************************************DPSAREFCVSVLRSNGLLGAVGECS*************HEISVIQSCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCSNL*************************EMGRIALMLKYPEPYTSRVRIGESYQAEVPDWSDQISSNLDSFSEPLEMDPAETVGLNVQFSNQFSKPDSISNWLQCQEVLTNNDTNVCVEGTKCGKWR*
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MLIQSSAPTSVEAAMTFAPSHGEQDLLCKWRPTERWKGYAECSELPKEVSELLIASNISENSGLNLVKRRKIQKNSVIVFPVEAETDEVRVEEGSSKSQVEYDNSVVIALPAPTSIVGSNKELRSKNIRSSKSKMGVGCCNRNTEGSDISNSDISRLEVLDEDPSAREFCVSVLRSNGLLGAVGECSVRSVASGEVSGTGHEISVIQSCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCSNLNSNVSQENSFLKSPNNSWMYGKPRSEMGRIALMLKYPEPYTSRVRIGESYQAEVPDWSDQISSNLDSFSEPLEMDPAETVGLNVQFSNQFSKPDSISNWLQCQEVLTNNDTNVCVEGTKCGKWRR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query381 2.2.26 [Sep-21-2011]
Q9P1Y6 1649 PHD and RING finger domai yes no 0.120 0.027 0.391 5e-07
A6H619 1682 PHD and RING finger domai yes no 0.120 0.027 0.391 6e-07
B7ZS371698 Bromodomain adjacent to z N/A no 0.162 0.036 0.393 7e-07
Q63625 1685 PHD and RING finger domai yes no 0.120 0.027 0.391 7e-07
Q9UIF82168 Bromodomain adjacent to z no no 0.118 0.020 0.422 1e-06
Q9DE132130 Bromodomain adjacent to z no no 0.118 0.021 0.422 1e-06
Q8BRB7 1872 Histone acetyltransferase no no 0.115 0.023 0.434 3e-06
Q9HDV4 1513 Lid2 complex component li yes no 0.123 0.031 0.404 3e-06
Q3UXZ9 1690 Lysine-specific demethyla no no 0.349 0.078 0.253 4e-06
Q5TKR9 1998 Histone acetyltransferase no no 0.225 0.043 0.310 5e-06
>sp|Q9P1Y6|PHRF1_HUMAN PHD and RING finger domain-containing protein 1 OS=Homo sapiens GN=PHRF1 PE=1 SV=3 Back     alignment and function desciption
 Score = 55.8 bits (133), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 29/46 (63%)

Query: 209 CKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCS 254
           C++CG++D    +LLCD CD  +H  C +P ++ +P D W C  C+
Sbjct: 186 CEVCGRSDREDRLLLCDGCDAGYHMECLDPPLQEVPVDEWFCPECA 231

Homo sapiens (taxid: 9606)
>sp|A6H619|PHRF1_MOUSE PHD and RING finger domain-containing protein 1 OS=Mus musculus GN=Phrf1 PE=1 SV=2 Back     alignment and function description
>sp|B7ZS37|BAZ2A_XENLA Bromodomain adjacent to zinc finger domain protein 2A OS=Xenopus laevis GN=baz2a PE=2 SV=1 Back     alignment and function description
>sp|Q63625|PHRF1_RAT PHD and RING finger domain-containing protein 1 OS=Rattus norvegicus GN=Phrf1 PE=1 SV=2 Back     alignment and function description
>sp|Q9UIF8|BAZ2B_HUMAN Bromodomain adjacent to zinc finger domain protein 2B OS=Homo sapiens GN=BAZ2B PE=1 SV=3 Back     alignment and function description
>sp|Q9DE13|BAZ2B_CHICK Bromodomain adjacent to zinc finger domain protein 2B OS=Gallus gallus GN=BAZ2B PE=2 SV=1 Back     alignment and function description
>sp|Q8BRB7|KAT6B_MOUSE Histone acetyltransferase KAT6B OS=Mus musculus GN=Kat6b PE=2 SV=3 Back     alignment and function description
>sp|Q9HDV4|LID2_SCHPO Lid2 complex component lid2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lid2 PE=1 SV=1 Back     alignment and function description
>sp|Q3UXZ9|KDM5A_MOUSE Lysine-specific demethylase 5A OS=Mus musculus GN=Kdm5a PE=1 SV=2 Back     alignment and function description
>sp|Q5TKR9|KAT6A_RAT Histone acetyltransferase KAT6A OS=Rattus norvegicus GN=Kat6a PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query381
224121224 486 predicted protein [Populus trichocarpa] 0.908 0.711 0.444 1e-71
255574123412 conserved hypothetical protein [Ricinus 0.923 0.854 0.417 4e-70
356517838 487 PREDICTED: uncharacterized protein LOC10 0.973 0.761 0.310 1e-42
449457271 512 PREDICTED: uncharacterized protein LOC10 0.774 0.576 0.363 8e-40
224087304 651 predicted protein [Populus trichocarpa] 0.656 0.384 0.392 9e-37
357465269475 PHD and RING finger domain-containing pr 0.971 0.778 0.307 1e-36
218194845470 hypothetical protein OsI_15901 [Oryza sa 0.564 0.457 0.365 3e-32
224142701 714 predicted protein [Populus trichocarpa] 0.650 0.347 0.369 1e-31
222628869465 hypothetical protein OsJ_14815 [Oryza sa 0.564 0.462 0.365 1e-31
297602727437 Os04g0425100 [Oryza sativa Japonica Grou 0.564 0.491 0.365 1e-31
>gi|224121224|ref|XP_002330774.1| predicted protein [Populus trichocarpa] gi|222872576|gb|EEF09707.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  276 bits (705), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 171/385 (44%), Positives = 223/385 (57%), Gaps = 39/385 (10%)

Query: 1   MLIQSSAPTSVEAAMTFAPSHGEQDLLCKWRPTERWKGYAECSELPKEVSELLIASNISE 60
           +++ S  P+SVEAA+ FAP++  QDL  +W P + WK          + S  LIA N  E
Sbjct: 78  IMLHSLIPSSVEAALPFAPNYSRQDLFSEWVPEKAWK----------DGSNPLIAGNCYE 127

Query: 61  NSGLNLVKRRKIQKNSVIVFPVEAETDEVRVEEGSSKSQVEYDNSVVIALPAPTSIVGSN 120
             G  + ++R+  K S I+  VE ETD+      +    V  D+ V              
Sbjct: 128 IPGSYVARKRR--KKSAIMSSVEPETDKAPTNAVNCDPPVVNDDGV-------------- 171

Query: 121 KELRSKNIRS----SKSKMGVGCCNRNTEGSDISNSDISRLEVLDEDPSAREFCVSVLRS 176
              R++ I S    SKS MGVG        S+I     S LEV  +D S RE C SVLRS
Sbjct: 172 ---RARTIPSVVAKSKSGMGVGSITARINISNIVELPDSELEVSGDDLSIRELCTSVLRS 228

Query: 177 NGLLGAVGECSVRSVASGEVSGTGHEISVIQSCKLCGKADNTSTMLLCDYCDEAFHPSCC 236
           +GLL   G+C V + A  EV G     +  QSC+LCG  +    MLLCD+C+EAFH SCC
Sbjct: 229 HGLLA--GDCPVSNSAPIEVLGNIKNNNFFQSCELCGNLEKALNMLLCDHCEEAFHLSCC 286

Query: 237 NPRIKILPTDNWLCQCCSNLNSNVSQENSFLKSPNNSWMYGKPRSEMGRIALMLKYPEPY 296
           N  +++LPTD W C  CS LN NVSQE SFLK+ + SW   K  S++G IA MLKYPE +
Sbjct: 287 NLNMEMLPTDLWFCPSCSKLNHNVSQETSFLKTCSISWWNEK--SKLGPIASMLKYPEAH 344

Query: 297 TSRVRIGESYQAEVPDWSDQISSNLDSFSEPLEMDPAETVGLNVQFSNQFSKPDSISNWL 356
           TSRVRIG SYQA VP+WSDQ+S + D F EP+E+D ++TV L+    ++ S    +SNWL
Sbjct: 345 TSRVRIGTSYQATVPEWSDQLSMDSDCFGEPIEIDTSQTVCLHECPQDRSSNAKPMSNWL 404

Query: 357 QCQEVLTNNDTNVCVEGTKCGKWRR 381
           QC+EVL  +D    +EGT CGKWRR
Sbjct: 405 QCREVL--HDDARGIEGTICGKWRR 427

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255574123|ref|XP_002527977.1| conserved hypothetical protein [Ricinus communis] gi|223532603|gb|EEF34389.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|356517838|ref|XP_003527593.1| PREDICTED: uncharacterized protein LOC100800660 [Glycine max] Back     alignment and taxonomy information
>gi|449457271|ref|XP_004146372.1| PREDICTED: uncharacterized protein LOC101212408 [Cucumis sativus] Back     alignment and taxonomy information
>gi|224087304|ref|XP_002308115.1| predicted protein [Populus trichocarpa] gi|222854091|gb|EEE91638.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357465269|ref|XP_003602916.1| PHD and RING finger domain-containing protein [Medicago truncatula] gi|355491964|gb|AES73167.1| PHD and RING finger domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|218194845|gb|EEC77272.1| hypothetical protein OsI_15901 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|224142701|ref|XP_002324693.1| predicted protein [Populus trichocarpa] gi|222866127|gb|EEF03258.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|222628869|gb|EEE61001.1| hypothetical protein OsJ_14815 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|297602727|ref|NP_001052802.2| Os04g0425100 [Oryza sativa Japonica Group] gi|255675461|dbj|BAF14716.2| Os04g0425100 [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query381
TAIR|locus:2047630631 AT2G19260 "AT2G19260" [Arabido 0.461 0.278 0.287 9.1e-13
UNIPROTKB|B7ZS371698 baz2a "Bromodomain adjacent to 0.162 0.036 0.393 2.2e-07
ZFIN|ZDB-GENE-120215-90 1263 si:ch73-39g20.1 "si:ch73-39g20 0.154 0.046 0.355 2.2e-06
UNIPROTKB|F1MG251456 BAZ2B "Uncharacterized protein 0.157 0.041 0.380 6.8e-06
UNIPROTKB|J3QQU3129 PHF12 "PHD finger protein 12" 0.115 0.341 0.387 1.5e-05
POMBASE|SPBP19A11.06 1513 lid2 "Lid2 complex subunit, pr 0.304 0.076 0.272 1.7e-05
TAIR|locus:2195945 522 AT1G77250 "AT1G77250" [Arabido 0.160 0.116 0.377 2e-05
FB|FBgn0263667 1482 Lpt "Lost PHDs of trr" [Drosop 0.152 0.039 0.377 2.2e-05
ZFIN|ZDB-GENE-041014-190391 dpf3 "D4, zinc and double PHD 0.131 0.127 0.4 2.7e-05
CGD|CAL0000662 723 orf19.5651 [Candida albicans ( 0.120 0.063 0.434 3.2e-05
TAIR|locus:2047630 AT2G19260 "AT2G19260" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 190 (71.9 bits), Expect = 9.1e-13, Sum P(2) = 9.1e-13
 Identities = 57/198 (28%), Positives = 82/198 (41%)

Query:   142 RNTEGSDISNSDISRLEVLDEDPSAREFCVSVLRS---NGLLGAVGECSVRSVASG-EVS 197
             R+T  S     D    EV        + C S+  S   N       E    S  SG   +
Sbjct:   341 RSTVSSRELLDDTQVTEVTCSSDGTNDSCSSLKSSSEVNSTSSKSREDDCYSSDSGVSET 400

Query:   198 GTGHEISVIQSCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIK-ILPTDNWLCQCCSNL 256
              T    S  + CK C K      ML+CD C+EA+H  CC  ++K +   D WLC  C   
Sbjct:   401 DTDGSSSPFRQCKHCDKPGTVEKMLICDECEEAYHTRCCGVQMKDVAEIDEWLCPSCLKN 460

Query:   257 NSNVSQENSFLKSPNNSWMYGKPRSEMGRIALMLKYPEPYTSRVRIGESYQAEVPDWSDQ 316
              S+ ++    + S    W          R+ +      P+   +RIG+ +QA+VPDWS  
Sbjct:   461 QSSKTKTKGRI-SHERKW----------RVTV------PFVIGIRIGKMFQADVPDWSGP 503

Query:   317 ISSNLDSFSEPLEMDPAE 334
               S+     EPLE+  +E
Sbjct:   504 TMSDTSFVGEPLEIGQSE 521
GO:0003677 "DNA binding" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS
GO:0008270 "zinc ion binding" evidence=IEA
UNIPROTKB|B7ZS37 baz2a "Bromodomain adjacent to zinc finger domain protein 2A" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-120215-90 si:ch73-39g20.1 "si:ch73-39g20.1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1MG25 BAZ2B "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|J3QQU3 PHF12 "PHD finger protein 12" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
POMBASE|SPBP19A11.06 lid2 "Lid2 complex subunit, predicted histone demethylase Lid2" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
TAIR|locus:2195945 AT1G77250 "AT1G77250" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0263667 Lpt "Lost PHDs of trr" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041014-190 dpf3 "D4, zinc and double PHD fingers, family 3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
CGD|CAL0000662 orf19.5651 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query381
pfam0062851 pfam00628, PHD, PHD-finger 4e-09
smart0024947 smart00249, PHD, PHD zinc finger 1e-08
>gnl|CDD|201356 pfam00628, PHD, PHD-finger Back     alignment and domain information 
 Score = 51.7 bits (124), Expect = 4e-09
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 209 CKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKI--LPTDNWLCQCCSN 255
           C +CGK D+   +LLCD CD  FH +C  P ++   +P   W C  C  
Sbjct: 2   CAVCGKVDDDGELLLCDGCDRWFHLACLGPPLEPEEIPEGEWYCPECKP 50

PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner to that of the RING and FYVE domains. Several PHD fingers have been identified as binding modules of methylated histone H3. Length = 51
>gnl|CDD|214584 smart00249, PHD, PHD zinc finger Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 381
KOG0825 1134 consensus PHD Zn-finger protein [General function 99.46
KOG1244336 consensus Predicted transcription factor Requiem/N 99.38
PF0062851 PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( 98.87
KOG1512381 consensus PHD Zn-finger protein [General function 98.83
KOG4299 613 consensus PHD Zn-finger protein [General function 98.66
smart0024947 PHD PHD zinc finger. The plant homeodomain (PHD) f 98.56
KOG4443 694 consensus Putative transcription factor HALR/MLL3, 98.54
cd04718148 BAH_plant_2 BAH, or Bromo Adjacent Homology domain 98.46
KOG0383 696 consensus Predicted helicase [General function pre 98.25
KOG0957707 consensus PHD finger protein [General function pre 98.16
KOG1245 1404 consensus Chromatin remodeling complex WSTF-ISWI, 98.07
KOG0955 1051 consensus PHD finger protein BR140/LIN-49 [General 98.03
KOG1973274 consensus Chromatin remodeling protein, contains P 97.84
COG5141 669 PHD zinc finger-containing protein [General functi 97.65
KOG4323 464 consensus Polycomb-like PHD Zn-finger protein [Gen 97.26
COG5034271 TNG2 Chromatin remodeling protein, contains PhD zi 97.02
KOG0956 900 consensus PHD finger protein AF10 [General functio 96.96
KOG0954 893 consensus PHD finger protein [General function pre 96.61
PF1383136 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A. 96.54
KOG1246 904 consensus DNA-binding protein jumonji/RBP2/SMCY, c 95.28
KOG1473 1414 consensus Nucleosome remodeling factor, subunit NU 94.99
PF0144855 ELM2: ELM2 domain; InterPro: IPR000949 The ELM2 (E 92.38
KOG4299 613 consensus PHD Zn-finger protein [General function 87.73
PF15446175 zf-PHD-like: PHD/FYVE-zinc-finger like domain 83.99
KOG4443 694 consensus Putative transcription factor HALR/MLL3, 83.23
>KOG0825 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information 
Probab=99.46  E-value=1.7e-14  Score=153.81  Aligned_cols=107  Identities=25%  Similarity=0.470  Sum_probs=85.4

Q ss_pred             CCCCCCCccccccCCC-----CCccchhhhhhhccccccccccccccccccccccC--------C---------------
Q 016859          148 DISNSDISRLEVLDED-----PSAREFCVSVLRSNGLLGAVGECSVRSVASGEVSG--------T---------------  199 (381)
Q Consensus       148 d~~eCp~~~~~~~~ee-----~s~~~~Cl~~l~~~~l~~~~~~Cp~~~~t~~~~~~--------~---------------  199 (381)
                      +...||+|+..++.++     .++|.||.+|+.+|....  .+||+++..|.+...        |               
T Consensus       122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~a--qTCPiDR~EF~~v~V~eS~~~~~~vR~lP~EEs~~~~e~  199 (1134)
T KOG0825|consen  122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCA--QTCPVDRGEFGEVKVLESTGIEANVRCLPSEESENILEK  199 (1134)
T ss_pred             hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhc--ccCchhhhhhheeeeeccccccceeEecchhhhhhhhhh
Confidence            3368999998864333     478899999999988555  999999988753110        1               


Q ss_pred             ---------ccccccccccccccccCCCCCeEEeccCCCC-CCCcccCCCCCCCCCCCccCccccCC
Q 016859          200 ---------GHEISVIQSCKLCGKADNTSTMLLCDYCDEA-FHPSCCNPRIKILPTDNWLCQCCSNL  256 (381)
Q Consensus       200 ---------~~~~~~~~~C~vC~~~~~~~~LLlCD~Cd~a-yH~~CL~PPL~~iP~G~W~Cp~C~~~  256 (381)
                               .........|.+|...+.++.||+||.|+.+ ||+|||+|+|.++|.++|||+.|.-.
T Consensus       200 ~~d~~~d~~~~~~~E~~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~dL  266 (1134)
T KOG0825|consen  200 GGDEKQDQISGLSQEEVKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSLL  266 (1134)
T ss_pred             ccccccccccCcccccccceeeccCChHHhheeecccccceeeccccCcccccccccceecCcchhh
Confidence                     0011123569999999999999999999999 99999999999999999999999644

>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription] Back     alignment and domain information
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG1512 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG4299 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>smart00249 PHD PHD zinc finger Back     alignment and domain information
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only] Back     alignment and domain information
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function Back     alignment and domain information
>KOG0383 consensus Predicted helicase [General function prediction only] Back     alignment and domain information
>KOG0957 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] Back     alignment and domain information
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics] Back     alignment and domain information
>COG5141 PHD zinc finger-containing protein [General function prediction only] Back     alignment and domain information
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0956 consensus PHD finger protein AF10 [General function prediction only] Back     alignment and domain information
>KOG0954 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A Back     alignment and domain information
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only] Back     alignment and domain information
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>PF01448 ELM2: ELM2 domain; InterPro: IPR000949 The ELM2 (Egl-27 and MTA1 homology 2) domain is a small domain of unknown function Back     alignment and domain information
>KOG4299 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain Back     alignment and domain information
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query381
4gy5_A241 Crystal Structure Of The Tandem Tudor Domain And Pl 3e-05
3ask_A226 Structure Of Uhrf1 In Complex With Histone Tail Len 4e-05
3zvz_B57 Phd Finger Of Human Uhrf1 Length = 57 4e-05
3v43_A112 Crystal Structure Of Moz Length = 112 7e-05
2ln0_A110 Structure Of Moz Length = 110 7e-05
2kwj_A114 Solution Structures Of The Double Phd Fingers Of Hu 1e-04
1f62_A51 Wstf-Phd Length = 51 2e-04
2ysm_A111 Solution Structure Of The First And Second Phd Doma 3e-04
>pdb|4GY5|A Chain A, Crystal Structure Of The Tandem Tudor Domain And Plant Homeodomain Of Uhrf1 With Histone H3k9me3 Length = 241 Back     alignment and structure 
Iteration: 1

 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 208 SCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPT-DNWLCQCCSN 255
           +C LCG   +    L+CD CD AFH  C +P +  +P+ D W C  C N
Sbjct: 192 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 240
>pdb|3ASK|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail Length = 226 Back     alignment and structure
>pdb|3ZVZ|B Chain B, Phd Finger Of Human Uhrf1 Length = 57 Back     alignment and structure
>pdb|3V43|A Chain A, Crystal Structure Of Moz Length = 112 Back     alignment and structure
>pdb|2LN0|A Chain A, Structure Of Moz Length = 110 Back     alignment and structure
>pdb|2KWJ|A Chain A, Solution Structures Of The Double Phd Fingers Of Human Transcriptional Protein Dpf3 Bound To A Histone Peptide Containing Acetylation At Lysine 14 Length = 114 Back     alignment and structure
>pdb|1F62|A Chain A, Wstf-Phd Length = 51 Back     alignment and structure
>pdb|2YSM|A Chain A, Solution Structure Of The First And Second Phd Domain From MyeloidLYMPHOID OR MIXED-Lineage Leukemia Protein 3 Homolog Length = 111 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query381
1f62_A51 Transcription factor WSTF; Zn-finger; NMR {Homo sa 4e-13
2e6r_A92 Jumonji/ARID domain-containing protein 1D; PHD dom 2e-12
2kwj_A114 Zinc finger protein DPF3; acetyl-lysine, transcrip 3e-12
3asl_A70 E3 ubiquitin-protein ligase UHRF1; histone reader 9e-12
2e6s_A77 E3 ubiquitin-protein ligase UHRF2; PHD domain, str 1e-11
3shb_A77 E3 ubiquitin-protein ligase UHRF1; unmodified hist 2e-11
2yql_A56 PHD finger protein 21A; PHD domain, structural gen 2e-11
2puy_A60 PHD finger protein 21A; PHD finger, histone CODE, 3e-11
3ask_A226 E3 ubiquitin-protein ligase UHRF1; histone reader 3e-11
2k16_A75 Transcription initiation factor TFIID subunit 3; p 4e-11
3v43_A112 Histone acetyltransferase KAT6A; MOZ, PHD finger, 9e-11
3v43_A112 Histone acetyltransferase KAT6A; MOZ, PHD finger, 2e-04
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 9e-11
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 2e-09
1mm2_A61 MI2-beta; PHD, zinc finger, protein scaffold, DNA 3e-10
2l5u_A61 Chromodomain-helicase-DNA-binding protein 4; CHD4, 4e-10
1xwh_A66 Autoimmune regulator; PHD domain, Zn binding domai 6e-10
1fp0_A88 KAP-1 corepressor; PHD domain, C3HC4 type zinc bin 9e-10
2ro1_A189 Transcription intermediary factor 1-beta; KAP, TIF 3e-08
1wev_A88 Riken cDNA 1110020M19; structural genomics, PHD do 3e-08
2yt5_A66 Metal-response element-binding transcription facto 4e-08
2ku3_A71 Bromodomain-containing protein 1; PHD finger, chro 1e-07
2l43_A88 N-teminal domain from histone H3.3, linker, PHD1 f 3e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
3o7a_A52 PHD finger protein 13 variant; PHF13, zinc finger, 7e-06
3o70_A68 PHD finger protein 13; PHF13, structural genomics 2e-05
2ri7_A174 Nucleosome-remodeling factor subunit BPTF; zinc fi 3e-05
1wem_A76 Death associated transcription factor 1; structura 5e-05
3o36_A184 Transcription intermediary factor 1-alpha; TRIM24, 1e-04
2kgg_A52 Histone demethylase jarid1A; PHD finger, histone m 2e-04
1we9_A64 PHD finger family protein; structural genomics, PH 2e-04
3u5n_A207 E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b 2e-04
2lbm_A142 Transcriptional regulator ATRX; metal binding prot 2e-04
3ql9_A129 Transcriptional regulator ATRX; zinc finger, trans 4e-04
1wep_A79 PHF8; structural genomics, PHD domain, riken struc 5e-04
3kqi_A75 GRC5, PHD finger protein 2; metal-binding, zinc-fi 6e-04
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2 Length = 51 Back     alignment and structure
 Score = 62.4 bits (152), Expect = 4e-13
 Identities = 17/46 (36%), Positives = 24/46 (52%)

Query: 209 CKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCS 254
           CK+C K      ++LCD C++AFH  C  P +  +P   W C  C 
Sbjct: 3   CKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQ 48
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 92 Back     alignment and structure
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Length = 114 Back     alignment and structure
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B Length = 70 Back     alignment and structure
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 77 Back     alignment and structure
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens} Length = 77 Back     alignment and structure
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 56 Back     alignment and structure
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens} Length = 60 Back     alignment and structure
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens} Length = 226 Back     alignment and structure
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Length = 75 Back     alignment and structure
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Length = 112 Back     alignment and structure
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Length = 112 Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Length = 111 Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Length = 111 Back     alignment and structure
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A Length = 61 Back     alignment and structure
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} Length = 61 Back     alignment and structure
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A Length = 66 Back     alignment and structure
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2 Length = 88 Back     alignment and structure
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} Length = 189 Back     alignment and structure
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 Length = 88 Back     alignment and structure
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} Length = 66 Back     alignment and structure
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} Length = 71 Back     alignment and structure
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} Length = 88 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} Length = 52 Back     alignment and structure
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Length = 68 Back     alignment and structure
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Length = 174 Back     alignment and structure
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Length = 76 Back     alignment and structure
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A Length = 184 Back     alignment and structure
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* Length = 52 Back     alignment and structure
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 64 Back     alignment and structure
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* Length = 207 Back     alignment and structure
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A Length = 142 Back     alignment and structure
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A Length = 129 Back     alignment and structure
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 Length = 79 Back     alignment and structure
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} Length = 75 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query381
1f62_A51 Transcription factor WSTF; Zn-finger; NMR {Homo sa 99.53
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 99.52
3asl_A70 E3 ubiquitin-protein ligase UHRF1; histone reader 99.5
2e6s_A77 E3 ubiquitin-protein ligase UHRF2; PHD domain, str 99.5
3shb_A77 E3 ubiquitin-protein ligase UHRF1; unmodified hist 99.49
2e6r_A92 Jumonji/ARID domain-containing protein 1D; PHD dom 99.48
1mm2_A61 MI2-beta; PHD, zinc finger, protein scaffold, DNA 99.48
2kwj_A114 Zinc finger protein DPF3; acetyl-lysine, transcrip 99.47
1xwh_A66 Autoimmune regulator; PHD domain, Zn binding domai 99.44
2lri_C66 Autoimmune regulator; Zn binding protein domain, a 99.44
1fp0_A88 KAP-1 corepressor; PHD domain, C3HC4 type zinc bin 99.44
2yql_A56 PHD finger protein 21A; PHD domain, structural gen 99.43
3v43_A112 Histone acetyltransferase KAT6A; MOZ, PHD finger, 99.42
2l5u_A61 Chromodomain-helicase-DNA-binding protein 4; CHD4, 99.41
1wev_A88 Riken cDNA 1110020M19; structural genomics, PHD do 99.4
2puy_A60 PHD finger protein 21A; PHD finger, histone CODE, 99.39
2yt5_A66 Metal-response element-binding transcription facto 99.36
3ask_A226 E3 ubiquitin-protein ligase UHRF1; histone reader 99.35
3o36_A184 Transcription intermediary factor 1-alpha; TRIM24, 99.28
2ku3_A71 Bromodomain-containing protein 1; PHD finger, chro 99.28
3u5n_A207 E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b 99.26
2l43_A88 N-teminal domain from histone H3.3, linker, PHD1 f 99.26
2ro1_A189 Transcription intermediary factor 1-beta; KAP, TIF 99.24
2k16_A75 Transcription initiation factor TFIID subunit 3; p 99.12
4gne_A107 Histone-lysine N-methyltransferase NSD3; zinc fing 98.94
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 98.85
2lv9_A98 Histone-lysine N-methyltransferase MLL5; zinc fing 98.84
1wen_A71 Inhibitor of growth family, member 4; ING1-like pr 98.83
2vnf_A60 ING 4, P29ING4, inhibitor of growth protein 4; ace 98.77
1weu_A91 Inhibitor of growth family, member 4; structural g 98.74
3c6w_A59 P28ING5, inhibitor of growth protein 5; chromatin, 98.72
2g6q_A62 Inhibitor of growth protein 2; protein-peptide com 98.66
2lbm_A142 Transcriptional regulator ATRX; metal binding prot 98.65
2jmi_A90 Protein YNG1, ING1 homolog 1; PHD, histone, recogn 98.58
3ql9_A129 Transcriptional regulator ATRX; zinc finger, trans 98.36
1x4i_A70 Inhibitor of growth protein 3; structural genomics 98.3
3o70_A68 PHD finger protein 13; PHF13, structural genomics 98.28
2kwj_A114 Zinc finger protein DPF3; acetyl-lysine, transcrip 98.18
1we9_A64 PHD finger family protein; structural genomics, PH 98.16
3v43_A112 Histone acetyltransferase KAT6A; MOZ, PHD finger, 98.06
1wee_A72 PHD finger family protein; structural genomics, PH 98.0
2xb1_A105 Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; 97.92
2vpb_A65 Hpygo1, pygopus homolog 1; gene regulation, WNT si 97.92
1wem_A76 Death associated transcription factor 1; structura 97.87
1wew_A78 DNA-binding family protein; structural genomics, P 97.84
3o7a_A52 PHD finger protein 13 variant; PHF13, zinc finger, 97.83
1wep_A79 PHF8; structural genomics, PHD domain, riken struc 97.83
2rsd_A68 E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant 97.8
2ri7_A174 Nucleosome-remodeling factor subunit BPTF; zinc fi 97.77
2kgg_A52 Histone demethylase jarid1A; PHD finger, histone m 97.65
3kqi_A75 GRC5, PHD finger protein 2; metal-binding, zinc-fi 97.38
1wil_A89 KIAA1045 protein; ring finger domain, structural g 97.35
3lqh_A183 Histone-lysine N-methyltransferase MLL; PHD finger 97.12
3kv5_D 488 JMJC domain-containing histone demethylation prote 96.74
4bbq_A117 Lysine-specific demethylase 2A; oxidoreductase, ub 96.7
4gne_A107 Histone-lysine N-methyltransferase NSD3; zinc fing 96.33
3pur_A 528 Lysine-specific demethylase 7 homolog; oxidoreduct 96.23
3kv4_A 447 PHD finger protein 8; epigenetics, histone CODE, c 94.98
4ap4_A133 E3 ubiquitin ligase RNF4; ligase-signalling protei 93.83
2e61_A69 Zinc finger CW-type PWWP domain protein 1; ZF-CW d 92.32
2ku7_A140 MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio 91.01
2pv0_B 386 DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, 90.57
2l7p_A100 Histone-lysine N-methyltransferase ASHH2; CW-domai 89.2
3a1b_A159 DNA (cytosine-5)-methyltransferase 3A, histone H3; 85.25
4bbq_A117 Lysine-specific demethylase 2A; oxidoreductase, ub 83.01
3rsn_A177 SET1/ASH2 histone methyltransferase complex subun; 80.56
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
Probab=99.53  E-value=2.4e-15  Score=109.88  Aligned_cols=49  Identities=35%  Similarity=0.946  Sum_probs=46.2

Q ss_pred             ccccccccCCCCCeEEeccCCCCCCCcccCCCCCCCCCCCccCccccCC
Q 016859          208 SCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCSNL  256 (381)
Q Consensus       208 ~C~vC~~~~~~~~LLlCD~Cd~ayH~~CL~PPL~~iP~G~W~Cp~C~~~  256 (381)
                      +|.+|+++++.+.||+||.|+++||++|+.|+|.++|.|+|+|+.|...
T Consensus         2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~~   50 (51)
T 1f62_A            2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPA   50 (51)
T ss_dssp             CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred             CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCcccc
Confidence            5999999998889999999999999999999999999999999999753
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Back     alignment and structure
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B Back     alignment and structure
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens} Back     alignment and structure
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A Back     alignment and structure
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Back     alignment and structure
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A Back     alignment and structure
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens} Back     alignment and structure
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Back     alignment and structure
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens} Back     alignment and structure
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} Back     alignment and structure
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens} Back     alignment and structure
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A Back     alignment and structure
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} Back     alignment and structure
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* Back     alignment and structure
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} Back     alignment and structure
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} Back     alignment and structure
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Back     alignment and structure
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A* Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Back     alignment and structure
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens} Back     alignment and structure
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A Back     alignment and structure
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A* Back     alignment and structure
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A* Back     alignment and structure
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus} Back     alignment and structure
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A Back     alignment and structure
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A* Back     alignment and structure
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A Back     alignment and structure
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Back     alignment and structure
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Back     alignment and structure
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Back     alignment and structure
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens} Back     alignment and structure
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A* Back     alignment and structure
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} Back     alignment and structure
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group} Back     alignment and structure
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Back     alignment and structure
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* Back     alignment and structure
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3 Back     alignment and structure
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A Back     alignment and structure
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Back     alignment and structure
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens} Back     alignment and structure
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A* Back     alignment and structure
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Back     alignment and structure
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} Back     alignment and structure
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Back     alignment and structure
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A* Back     alignment and structure
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens} Back     alignment and structure
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B* Back     alignment and structure
>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana} Back     alignment and structure
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A* Back     alignment and structure
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens} Back     alignment and structure
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 381
d1f62a_51 g.50.1.2 (A:) Williams-Beuren syndrome transcripti 4e-12
d1fp0a170 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF- 4e-11
d1mm2a_61 g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens 2e-09
d1weva_88 g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus mu 3e-08
d1weea_72 g.50.1.2 (A:) PHD finger protein At1g33420 {Thale 7e-08
d1we9a_64 g.50.1.2 (A:) PHD finger protein At5g26210 {Thale 4e-07
d1wema_76 g.50.1.2 (A:) Death associated transcription facto 3e-06
d1wepa_79 g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus mus 1e-04
d2pnxa151 g.50.1.2 (A:195-245) Inhibitor of growth protein 4 0.004
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Length = 51 Back     information, alignment and structure

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (141), Expect = 4e-12
 Identities = 17/45 (37%), Positives = 24/45 (53%)

Query: 209 CKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCC 253
           CK+C K      ++LCD C++AFH  C  P +  +P   W C  C
Sbjct: 3   CKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPAC 47
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Length = 70 Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Length = 61 Back     information, alignment and structure
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88 Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 72 Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64 Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 76 Back     information, alignment and structure
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Length = 79 Back     information, alignment and structure
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Length = 51 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query381
d1f62a_51 Williams-Beuren syndrome transcription factor, WST 99.39
d1fp0a170 Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo 99.3
d1mm2a_61 Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 99.21
d1weva_88 PHD finger protein 22 {Mouse (Mus musculus) [TaxId 98.89
d1wesa_71 PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu 98.65
d2pnxa151 Inhibitor of growth protein 4, Ing4 {Homo sapiens 98.6
d1weea_72 PHD finger protein At1g33420 {Thale cress (Arabido 98.58
d1we9a_64 PHD finger protein At5g26210 {Thale cress (Arabido 98.52
d1wepa_79 PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 98.26
d1wema_76 Death associated transcription factor 1, Datf1 (DI 98.07
d1wewa_78 Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop 97.76
d1vyxa_60 IE1B protein (ORF K3), N-terminal domain {Kaposi's 81.31
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=5.1e-14  Score=101.17  Aligned_cols=49  Identities=35%  Similarity=0.946  Sum_probs=46.1

Q ss_pred             ccccccccCCCCCeEEeccCCCCCCCcccCCCCCCCCCCCccCccccCC
Q 016859          208 SCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCSNL  256 (381)
Q Consensus       208 ~C~vC~~~~~~~~LLlCD~Cd~ayH~~CL~PPL~~iP~G~W~Cp~C~~~  256 (381)
                      .|.+|++.++.+.||+||.|+++||++|+.||+..+|.++|+|+.|+..
T Consensus         2 ~C~vC~~~~~~~~~i~Cd~C~~~~H~~C~~p~~~~~p~~~W~C~~C~~~   50 (51)
T d1f62a_           2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPA   50 (51)
T ss_dssp             CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred             CCcCcCCCCCCCCEEEcCCCCCCCCCCCCCCCCCcCCCCCEECcCCcCc
Confidence            4899999999999999999999999999999999999999999999754
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Back     information, alignment and structure