Citrus Sinensis ID: 016866

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-
Protein Sequence
MFVLRETAWCRMINVKTTFREDYLDRTFEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccEEEEEccccHHHHHHHHHHccccEEEEEEcccccEEEEccHHHHHHHHHHHccccccccHHHHHHcHHHHHHHHHHHHHHcccccccccccccccEEccccccHHHHHHHHHHccccEEEEEccccccccccEEEEEEcHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEcccccHHHHHHHHHHccccEEEEEcccccEEEEEEcccHHHHHccccccccccccccHHHHHHHcccccccccccccccEEEcccccHHHHHHHHHHccccEEEEEEccccEEEEEEEHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccEEEHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHccccEEEcccccEEEEEEccHHHHHHHHHHHHcccEEcccccccccEEEEEEEHHHHHHHHHHHHcccccccHHHHHHccHHHHHHHHHHHccHHHHHHHcccccccEEEEccccHHHHHHHHHHHHccccccEEcccccccccccEEEEEcHHHHHHHHHHHHHccccccHHHcccHHHcccccEcccccccccccEEEEccccHHHHHHHHHHHHcccEcEEEccccEEEEHHHHHHHHHHHHcccccccccccccHHHHHHHccccccccccccccEEEEcccccHHHHHHHHHHcccEEEEEEEccccEEEEEEEHHHHHHHHHcc
Coil and Loop (DISEMBL)
MFVLRETAWCRMINVKTTFREDYLDRTFEGFAQYSEADLQLSRDRISSFLSTHTVYEllpdsgkvtaLDVNLAVKQAFHVLYeqglpmvplwddfkgRFVGVLSALDFILILRElgtngsnlteeeLETHTISAWKVGKLQLNLKrqmdgngrpcprplvqagpydsLKEVALKILQnkvatvpiihstgpagscqEILYLASLSDILKCICRhfkhsssslpilqqpvssiqlgtwvprigeangrpfamlrPTASLGSALALLVQadvssipivddndslldiysrsDITALAKDKAYAQIHLDEMNIHQALqlgqdanpslgfngqrcqmclrsdpLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV
Flexible Loop (DISEMBL)
mfvlretawcrminvkttfredYLDRTFEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSsipivddndslLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMErlanpgvrRLVIVEagskrvegiislsdVFRFLLGV
Low Complexity Region (SEG)
MFVLRETAWCRMINVKTTFREDYLDRTFEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV
Disordered region (IsUnstruct)
*FVLRETAWCRMINVKTTFREDYLDRTFEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKR**********RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL**
Disordered Region (DISOPRED)
MFVLR**************************************DRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQ*********GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV
Disordered Region (DISEMBL)
MFVLRETAWCRMINVKTTFREDYLDRTFEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV
Disordered Region (DISPRO)
MFVLRETAWCRMINVKTTFREDYLDRT*EGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFVLRETAWCRMINVKTTFREDYLDRTFEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	381	2.2.26 [Sep-21-2011]
Q944A6	487	Sucrose nonfermenting 4-l	yes	no	0.931	0.728	0.768	1e-155
P58108	330	5'-AMP-activated protein	yes	no	0.769	0.887	0.320	4e-33
P54619	331	5'-AMP-activated protein	yes	no	0.769	0.885	0.320	4e-33
Q09138	330	5'-AMP-activated protein	yes	no	0.769	0.887	0.320	4e-33
O54950	330	5'-AMP-activated protein	yes	no	0.769	0.887	0.320	5e-33
P80385	330	5'-AMP-activated protein	yes	no	0.769	0.887	0.317	1e-32
Q8T277	577	5'-AMP-activated protein	yes	no	0.818	0.540	0.292	2e-30
Q91WG5	566	5'-AMP-activated protein	no	no	0.763	0.514	0.301	9e-30
Q9UGJ0	569	5'-AMP-activated protein	no	no	0.763	0.511	0.301	2e-29
Q5R4S0	524	5'-AMP-activated protein	no	no	0.763	0.555	0.298	8e-29

>sp|Q944A6|SNF4_ARATH Sucrose nonfermenting 4-like protein OS=Arabidopsis thaliana GN=SNF4 PE=1 SV=1

 Score =  548 bits (1413), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 275/358 (76%), Positives = 310/358 (86%), Gaps = 3/358 (0%)

Query: 25  DRTFEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQ 84
           D + E   + S  DL+LSR RIS  LST T YELLP+SGKV ALDVNL VKQAFH+LYEQ
Sbjct: 132 DPSQEAVPRMSGVDLELSRHRISVLLSTRTAYELLPESGKVIALDVNLPVKQAFHILYEQ 191

Query: 85  GLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNL 144
           G+P+ PLWD  KG+FVGVL  LDFILILRELGT+GSNLTEEELETHTI+AWK GK  ++ 
Sbjct: 192 GIPLAPLWDFGKGQFVGVLGPLDFILILRELGTHGSNLTEEELETHTIAAWKEGKAHIS- 250

Query: 145 KRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASL 204
            RQ DG+GRP PRPLVQ GPYD+LK+VALKILQNKVA VP+I+S+   GS  ++L+LASL
Sbjct: 251 -RQYDGSGRPYPRPLVQVGPYDNLKDVALKILQNKVAAVPVIYSSLQDGSYPQLLHLASL 309

Query: 205 SDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALAL 264
           S ILKCICR+F+HSSSSLPILQQP+ SI LGTWVPRIGE++ +P A LRP ASLGSALAL
Sbjct: 310 SGILKCICRYFRHSSSSLPILQQPICSIPLGTWVPRIGESSSKPLATLRPHASLGSALAL 369

Query: 265 LVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSL 324
           LVQA+VSSIP+VDDNDSL+DIYSRSDITALAKDKAYAQIHLD+M +HQALQLGQDA+P  
Sbjct: 370 LVQAEVSSIPVVDDNDSLIDIYSRSDITALAKDKAYAQIHLDDMTVHQALQLGQDASPPY 429

Query: 325 G-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV 381
           G FNGQRC MCLRSD L KVMERLANPGVRRLVIVEAGSKRVEGIISLSDVF+FLLG+
Sbjct: 430 GIFNGQRCHMCLRSDSLVKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFQFLLGL 487

Regulatory subunit of the probable trimeric SNF1-related protein kinase (SnRK) complex, which may play a role in a signal transduction cascade regulating gene expression and carbohydrate metabolism in higher plants.
Arabidopsis thaliana (taxid: 3702)

>sp|P58108|AAKG1_BOVIN 5'-AMP-activated protein kinase subunit gamma-1 OS=Bos taurus GN=PRKAG1 PE=2 SV=2

 Score =  142 bits (359), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 107/334 (32%), Positives = 166/334 (49%), Gaps = 41/334 (12%)

Query: 47  SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSAL 106
           +SF+ +H  Y+L+P S K+   D +L VK+AF  L   G+   PLWD  K  FVG+L+  
Sbjct: 30  TSFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT 89

Query: 107 DFILILRELGTNGSNLTE-EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPY 165
           DFI IL       S L +  ELE H I  W+   LQ + K            PLV   P 
Sbjct: 90  DFINILHRYY--KSALVQIYELEEHKIETWREVYLQDSFK------------PLVCISPN 135

Query: 166 DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPIL 225
            SL +    +++NK+  +P+I     +G+   IL    +   LK     F         +
Sbjct: 136 ASLFDAVSSLIRNKIHRLPVI--DPESGNTLYILTHKRILKFLKLFITEFPKPE----FM 189

Query: 226 QQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDI 285
            + +  +Q+GT+      AN    AM+R T  +  AL + VQ  VS++P+VD+   ++DI
Sbjct: 190 SKSLEELQIGTY------AN---IAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDI 240

Query: 286 YSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVME 345
           YS+ D+  LA +K Y  +   ++++ +ALQ     + S  F G     C   + L  ++ 
Sbjct: 241 YSKFDVINLAAEKTYNNL---DVSVTKALQ-----HRSHYFEG--VLKCYLHETLETIIN 290

Query: 346 RLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 379
           RL    V RLV+V+     V+GI+SLSD+ + L+
Sbjct: 291 RLVEAEVHRLVVVDEND-VVKGIVSLSDILQALV 323

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Bos taurus (taxid: 9913)

>sp|P54619|AAKG1_HUMAN 5'-AMP-activated protein kinase subunit gamma-1 OS=Homo sapiens GN=PRKAG1 PE=1 SV=1

 Score =  142 bits (358), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 107/334 (32%), Positives = 166/334 (49%), Gaps = 41/334 (12%)

Query: 47  SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSAL 106
           +SF+ +H  Y+L+P S K+   D +L VK+AF  L   G+   PLWD  K  FVG+L+  
Sbjct: 30  TSFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT 89

Query: 107 DFILILRELGTNGSNLTE-EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPY 165
           DFI IL       S L +  ELE H I  W+   LQ + K            PLV   P 
Sbjct: 90  DFINILHRYY--KSALVQIYELEEHKIETWREVYLQDSFK------------PLVCISPN 135

Query: 166 DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPIL 225
            SL +    +++NK+  +P+I     +G+   IL    +   LK     F         +
Sbjct: 136 ASLFDAVSSLIRNKIHRLPVI--DPESGNTLYILTHKRILKFLKLFITEFPKPE----FM 189

Query: 226 QQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDI 285
            + +  +Q+GT+      AN    AM+R T  +  AL + VQ  VS++P+VD+   ++DI
Sbjct: 190 SKSLEELQIGTY------AN---IAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDI 240

Query: 286 YSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVME 345
           YS+ D+  LA +K Y  +   ++++ +ALQ     + S  F G     C   + L  ++ 
Sbjct: 241 YSKFDVINLAAEKTYNNL---DVSVTKALQ-----HRSHYFEG--VLKCYLHETLETIIN 290

Query: 346 RLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 379
           RL    V RLV+V+     V+GI+SLSD+ + L+
Sbjct: 291 RLVEAEVHRLVVVDEND-VVKGIVSLSDILQALV 323

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Homo sapiens (taxid: 9606)

>sp|Q09138|AAKG1_PIG 5'-AMP-activated protein kinase subunit gamma-1 OS=Sus scrofa GN=PRKAG1 PE=1 SV=2

 Score =  142 bits (358), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 107/334 (32%), Positives = 166/334 (49%), Gaps = 41/334 (12%)

Query: 47  SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSAL 106
           +SF+ +H  Y+L+P S K+   D +L VK+AF  L   G+   PLWD  K  FVG+L+  
Sbjct: 30  TSFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT 89

Query: 107 DFILILRELGTNGSNLTE-EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPY 165
           DFI IL       S L +  ELE H I  W+   LQ + K            PLV   P 
Sbjct: 90  DFINILHRYY--KSALVQIYELEEHKIETWREVYLQDSFK------------PLVCISPN 135

Query: 166 DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPIL 225
            SL +    +++NK+  +P+I     +G+   IL    +   LK     F         +
Sbjct: 136 ASLFDAVSSLIRNKIHRLPVI--DPESGNTLYILTHKRILKFLKLFITEFPKPE----FM 189

Query: 226 QQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDI 285
            + +  +Q+GT+      AN    AM+R T  +  AL + VQ  VS++P+VD+   ++DI
Sbjct: 190 SKSLEELQIGTY------AN---IAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDI 240

Query: 286 YSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVME 345
           YS+ D+  LA +K Y  +   ++++ +ALQ     + S  F G     C   + L  ++ 
Sbjct: 241 YSKFDVINLAAEKTYNNL---DVSVTKALQ-----HRSHYFEG--VLKCYLHETLETIIN 290

Query: 346 RLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 379
           RL    V RLV+V+     V+GI+SLSD+ + L+
Sbjct: 291 RLVEAEVHRLVVVDEND-VVKGIVSLSDILQALV 323

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Sus scrofa (taxid: 9823)

>sp|O54950|AAKG1_MOUSE 5'-AMP-activated protein kinase subunit gamma-1 OS=Mus musculus GN=Prkag1 PE=1 SV=2

 Score =  142 bits (357), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 107/334 (32%), Positives = 166/334 (49%), Gaps = 41/334 (12%)

Query: 47  SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSAL 106
           +SF+ +H  Y+L+P S K+   D +L VK+AF  L   G+   PLWD  K  FVG+L+  
Sbjct: 29  TSFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT 88

Query: 107 DFILILRELGTNGSNLTE-EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPY 165
           DFI IL       S L +  ELE H I  W+   LQ + K            PLV   P 
Sbjct: 89  DFINILHRY--YKSALVQIYELEEHKIETWREVYLQDSFK------------PLVCISPN 134

Query: 166 DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPIL 225
            SL +    +++NK+  +P+I     +G+   IL    +   LK     F         +
Sbjct: 135 ASLFDAVSSLIRNKIHRLPVI--DPESGNTLYILTHKRILKFLKLFITEFPKPE----FM 188

Query: 226 QQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDI 285
            + +  +Q+GT+      AN    AM+R T  +  AL + VQ  VS++P+VD+   ++DI
Sbjct: 189 SKSLQELQIGTY------AN---IAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDI 239

Query: 286 YSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVME 345
           YS+ D+  LA +K Y  +   ++++ +ALQ     + S  F G     C   + L  ++ 
Sbjct: 240 YSKFDVINLAAEKTYNNL---DVSVTKALQ-----HRSHYFEG--VLKCYLHETLETIIN 289

Query: 346 RLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 379
           RL    V RLV+V+     V+GI+SLSD+ + L+
Sbjct: 290 RLVEAEVHRLVVVDEHD-VVKGIVSLSDILQALV 322

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Mus musculus (taxid: 10090)

>sp|P80385|AAKG1_RAT 5'-AMP-activated protein kinase subunit gamma-1 OS=Rattus norvegicus GN=Prkag1 PE=1 SV=3

 Score =  140 bits (354), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 106/334 (31%), Positives = 166/334 (49%), Gaps = 41/334 (12%)

Query: 47  SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSAL 106
           ++F+ +H  Y+L+P S K+   D +L VK+AF  L   G+   PLWD  K  FVG+L+  
Sbjct: 29  TTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT 88

Query: 107 DFILILRELGTNGSNLTE-EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPY 165
           DFI IL       S L +  ELE H I  W+   LQ + K            PLV   P 
Sbjct: 89  DFINILHRY--YKSALVQIYELEEHKIETWREVYLQDSFK------------PLVCISPN 134

Query: 166 DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPIL 225
            SL +    +++NK+  +P+I     +G+   IL    +   LK     F         +
Sbjct: 135 ASLFDAVSSLIRNKIHRLPVI--DPESGNTLYILTHKRILKFLKLFITEFPKPE----FM 188

Query: 226 QQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDI 285
            + +  +Q+GT+      AN    AM+R T  +  AL + VQ  VS++P+VD+   ++DI
Sbjct: 189 SKSLEELQIGTY------AN---IAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDI 239

Query: 286 YSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVME 345
           YS+ D+  LA +K Y  +   ++++ +ALQ     + S  F G     C   + L  ++ 
Sbjct: 240 YSKFDVINLAAEKTYNNL---DVSVTKALQ-----HRSHYFEG--VLKCYLHETLEAIIN 289

Query: 346 RLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 379
           RL    V RLV+V+     V+GI+SLSD+ + L+
Sbjct: 290 RLVEAEVHRLVVVDEHD-VVKGIVSLSDILQALV 322

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Rattus norvegicus (taxid: 10116)

>sp|Q8T277|PRKAG_DICDI 5'-AMP-activated protein kinase subunit gamma OS=Dictyostelium discoideum GN=prkag PE=3 SV=3

 Score =  134 bits (336), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 102/349 (29%), Positives = 172/349 (49%), Gaps = 37/349 (10%)

Query: 35  SEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDD 94
           +E  ++  +    +FL  HT Y+++P SGKV  LD  LAVK AF+ L E G+   PLW+ 
Sbjct: 256 TEKYIEEGKQVFVNFLKGHTCYDVIPISGKVVVLDTKLAVKSAFYALEENGIKSAPLWNS 315

Query: 95  FKGRFVGVLSALDFI-LILRELGTNGSNLTEEELETHTISA-WKVGKLQLNLKRQMDGNG 152
            +  F G+++  DFI ++L       SN   +++  H I   W+    +++++R      
Sbjct: 316 EQHDFTGMITVSDFIDILLYYYKKPKSNNIFQDMGIHRIETFWR----EISVER------ 365

Query: 153 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCIC 212
              P  L+   P  +L + A  +L  K+  +P++           IL++ + S IL  + 
Sbjct: 366 ---PSSLISTEPETNLYDAASLLLCYKIHRLPVVD----KKDTNSILHILTHSRILAFMM 418

Query: 213 RHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSS 272
           + F      L  L  P+ S+ +GT+   +      P         L   L LL +  +S+
Sbjct: 419 KSFPQLPEKL--LSIPIGSLGIGTFATVVTVMTHTP---------LVEVLELLSEKKISA 467

Query: 273 IPIVDDNDS-LLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRC 331
           +PI+D   S ++D+YS+SD+T ++K    +   L+ + +HQ L         L    ++ 
Sbjct: 468 VPIIDSETSKIVDVYSKSDVTLMSKQGILSPSDLN-LPVHQVLS----TFTKLWQRPEQI 522

Query: 332 QMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 380
             C R D L  V+ER     V RLV +++ SK+VEGI+SLSD+  +LL 
Sbjct: 523 YTCTRFDKLGDVIERCIKKRVHRLVCIDS-SKKVEGILSLSDILNYLLN 570

AMPK may be responsible for the regulation of fatty acid synthesis by phosphorylation of acetyl-CoA carboxylase.

Dictyostelium discoideum (taxid: 44689)

>sp|Q91WG5|AAKG2_MOUSE 5'-AMP-activated protein kinase subunit gamma-2 OS=Mus musculus GN=Prkag2 PE=1 SV=2

 Score =  131 bits (329), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 100/332 (30%), Positives = 163/332 (49%), Gaps = 41/332 (12%)

Query: 49  FLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDF 108
           F+ +H  Y+++P S K+   D  L VK+AF  L   G+   PLW+  K  FVG+L+  DF
Sbjct: 261 FMRSHKCYDIVPTSSKLVVFDTTLQVKKAFFALVANGVRAAPLWESKKQSFVGMLTITDF 320

Query: 109 ILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSL 168
           I IL         +   ELE H I  W+   LQ   K            PLV   P  SL
Sbjct: 321 INILHRY-YKSPMVQIYELEEHKIETWRELYLQETFK------------PLVNISPDASL 367

Query: 169 KEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP 228
            +    +++NK+  +P+I     +G+    LY+ +   ILK + + F         ++Q 
Sbjct: 368 FDAVYSLIKNKIHRLPVIDPI--SGNA---LYILTHKRILKFL-QLFMSDMPKPAFMKQN 421

Query: 229 VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSR 288
           +  + +GT+            A + P   +  AL + V+  +S++P+VD++  ++DIYS+
Sbjct: 422 LDELGIGTY---------HNIAFIHPDTPIIKALNIFVERRISALPVVDESGKVVDIYSK 472

Query: 289 SDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLA 348
            D+  LA +K Y  +   ++ + QALQ     + S  F G     C + + L  +++R+ 
Sbjct: 473 FDVINLAAEKTYNNL---DITVTQALQ-----HRSQYFEG--VVKCSKLETLETIVDRIV 522

Query: 349 NPGVRRLVIV-EAGSKRVEGIISLSDVFRFLL 379
              V RLV+V EA S  + GIISLSD+ + L+
Sbjct: 523 RAEVHRLVVVNEADS--IVGIISLSDILQALI 552

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Mus musculus (taxid: 10090)

>sp|Q9UGJ0|AAKG2_HUMAN 5'-AMP-activated protein kinase subunit gamma-2 OS=Homo sapiens GN=PRKAG2 PE=1 SV=1

 Score =  129 bits (325), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 100/332 (30%), Positives = 163/332 (49%), Gaps = 41/332 (12%)

Query: 49  FLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDF 108
           F+ +H  Y+++P S K+   D  L VK+AF  L   G+   PLW+  K  FVG+L+  DF
Sbjct: 264 FMRSHKCYDIVPTSSKLVVFDTTLQVKKAFFALVANGVRAAPLWESKKQSFVGMLTITDF 323

Query: 109 ILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSL 168
           I IL         +   ELE H I  W+   LQ   K            PLV   P  SL
Sbjct: 324 INILHRY-YKSPMVQIYELEEHKIETWRELYLQETFK------------PLVNISPDASL 370

Query: 169 KEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP 228
            +    +++NK+  +P+I     +G+    LY+ +   ILK + + F         ++Q 
Sbjct: 371 FDAVYSLIKNKIHRLPVIDPI--SGNA---LYILTHKRILKFL-QLFMSDMPKPAFMKQN 424

Query: 229 VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSR 288
           +  + +GT+            A + P   +  AL + V+  +S++P+VD++  ++DIYS+
Sbjct: 425 LDELGIGTY---------HNIAFIHPDTPIIKALNIFVERRISALPVVDESGKVVDIYSK 475

Query: 289 SDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLA 348
            D+  LA +K Y  +   ++ + QALQ     + S  F G     C + + L  +++R+ 
Sbjct: 476 FDVINLAAEKTYNNL---DITVTQALQ-----HRSQYFEG--VVKCNKLEILETIVDRIV 525

Query: 349 NPGVRRLVIV-EAGSKRVEGIISLSDVFRFLL 379
              V RLV+V EA S  + GIISLSD+ + L+
Sbjct: 526 RAEVHRLVVVNEADS--IVGIISLSDILQALI 555

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Homo sapiens (taxid: 9606)

>sp|Q5R4S0|AAKG2_PONAB 5'-AMP-activated protein kinase subunit gamma-2 OS=Pongo abelii GN=PRKAG2 PE=2 SV=1

 Score =  128 bits (321), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 99/332 (29%), Positives = 162/332 (48%), Gaps = 41/332 (12%)

Query: 49  FLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDF 108
           F+ +H  Y+++P S K+   D  L VK+AF  L   G+   PLW+  K  FVG+L+  DF
Sbjct: 219 FMRSHKCYDIVPTSSKLVVFDTTLQVKKAFFALVANGVRAAPLWESKKQSFVGMLTITDF 278

Query: 109 ILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSL 168
           I IL         +   ELE H I  W+   LQ   K            PLV   P  SL
Sbjct: 279 INILHRY-YKSPMVQIYELEEHKIETWRELYLQETFK------------PLVNISPDASL 325

Query: 169 KEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP 228
            +    +++NK+  +P+I     +G+    LY+ +   ILK + + F         ++Q 
Sbjct: 326 LDAVYSLIKNKIHRLPVIDPI--SGNA---LYILTHKRILKFL-QLFMSDMPKPAFMKQN 379

Query: 229 VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSR 288
           +  + +GT+            A + P   +  AL + V+  +S++P+VD++  ++DIYS+
Sbjct: 380 LDELGIGTY---------HNIAFIHPDTPIIKALNIFVERRISALPVVDESGKVVDIYSK 430

Query: 289 SDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLA 348
            D+  LA +K Y  +   ++ + QALQ     + S  F G     C + + L  +++R+ 
Sbjct: 431 FDVINLAAEKTYNNL---DITVTQALQ-----HRSQYFEG--VVKCNKLEILETIVDRIV 480

Query: 349 NPGVRRLVIV-EAGSKRVEGIISLSDVFRFLL 379
              V RLV+  EA S  + GIISLSD+ + L+
Sbjct: 481 RAEVHRLVVANEADS--IVGIISLSDILQALI 510

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	381
225450904	488	PREDICTED: sucrose nonfermenting 4-like	0.916	0.715	0.810	1e-161
359487759	482	PREDICTED: sucrose nonfermenting 4-like	0.916	0.724	0.810	1e-161
224123152	488	predicted protein [Populus trichocarpa]	0.926	0.723	0.767	1e-155
9965729	382	putative activator subunit of SNF1-relat	0.931	0.929	0.768	1e-154
255542654	540	AMP-activated protein kinase, gamma regu	0.968	0.683	0.752	1e-154
224123752	475	predicted protein [Populus trichocarpa]	0.905	0.726	0.775	1e-154
18390971	487	sucrose nonfermenting 4-like protein [Ar	0.931	0.728	0.768	1e-153
312281727	487	unnamed protein product [Thellungiella h	0.931	0.728	0.762	1e-153
297849192	479	hypothetical protein ARALYDRAFT_470981 [	0.934	0.743	0.763	1e-152
449450664	491	PREDICTED: sucrose nonfermenting 4-like	0.926	0.718	0.726	1e-143

>gi|225450904|ref|XP_002284480.1| PREDICTED: sucrose nonfermenting 4-like protein-like isoform 1 [Vitis vinifera]

 Score =  573 bits (1476), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 286/353 (81%), Positives = 314/353 (88%), Gaps = 4/353 (1%)

Query: 29  EGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPM 88
           E   + SEADL++SR R+S FLSTH  YELLP+SGKV ALDVNL VKQAFH LYEQG+P+
Sbjct: 139 EVIPRISEADLEVSRHRVSEFLSTHIAYELLPESGKVIALDVNLPVKQAFHTLYEQGIPV 198

Query: 89  VPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQM 148
            PLWD  KG+FVGVLSALDFILILRELG +GSNLTEEELETHTISAWK GKL L   RQ+
Sbjct: 199 APLWDFCKGQFVGVLSALDFILILRELGNHGSNLTEEELETHTISAWKEGKLHL---RQI 255

Query: 149 DGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDIL 208
           DG+GR CPR LV AGPYDSLK+V LKILQNKVATVPIIHS    GS  ++L+LASLS IL
Sbjct: 256 DGSGRLCPRHLVHAGPYDSLKDVTLKILQNKVATVPIIHSASQDGSFPQLLHLASLSGIL 315

Query: 209 KCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQA 268
           KCICRHF+HSSSSLPILQQP+ SI +GTWVP+IGE+NG+PFAMLRP ASLG+AL+LLVQA
Sbjct: 316 KCICRHFRHSSSSLPILQQPICSIPVGTWVPKIGESNGQPFAMLRPNASLGAALSLLVQA 375

Query: 269 DVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF-N 327
           +VSSIPIVDDNDSLLDIYSRSDITALAKD+AYAQIHLD M+IHQALQLGQDAN   GF +
Sbjct: 376 EVSSIPIVDDNDSLLDIYSRSDITALAKDRAYAQIHLDNMSIHQALQLGQDANSPYGFIS 435

Query: 328 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 380
           GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEG+ISLSDVFRFLLG
Sbjct: 436 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGVISLSDVFRFLLG 488

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487759|ref|XP_003633645.1| PREDICTED: sucrose nonfermenting 4-like protein-like isoform 2 [Vitis vinifera] gi|296088362|emb|CBI36807.3| unnamed protein product [Vitis vinifera]

 Score =  572 bits (1474), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 286/353 (81%), Positives = 314/353 (88%), Gaps = 4/353 (1%)

Query: 29  EGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPM 88
           E   + SEADL++SR R+S FLSTH  YELLP+SGKV ALDVNL VKQAFH LYEQG+P+
Sbjct: 133 EVIPRISEADLEVSRHRVSEFLSTHIAYELLPESGKVIALDVNLPVKQAFHTLYEQGIPV 192

Query: 89  VPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQM 148
            PLWD  KG+FVGVLSALDFILILRELG +GSNLTEEELETHTISAWK GKL L   RQ+
Sbjct: 193 APLWDFCKGQFVGVLSALDFILILRELGNHGSNLTEEELETHTISAWKEGKLHL---RQI 249

Query: 149 DGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDIL 208
           DG+GR CPR LV AGPYDSLK+V LKILQNKVATVPIIHS    GS  ++L+LASLS IL
Sbjct: 250 DGSGRLCPRHLVHAGPYDSLKDVTLKILQNKVATVPIIHSASQDGSFPQLLHLASLSGIL 309

Query: 209 KCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQA 268
           KCICRHF+HSSSSLPILQQP+ SI +GTWVP+IGE+NG+PFAMLRP ASLG+AL+LLVQA
Sbjct: 310 KCICRHFRHSSSSLPILQQPICSIPVGTWVPKIGESNGQPFAMLRPNASLGAALSLLVQA 369

Query: 269 DVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF-N 327
           +VSSIPIVDDNDSLLDIYSRSDITALAKD+AYAQIHLD M+IHQALQLGQDAN   GF +
Sbjct: 370 EVSSIPIVDDNDSLLDIYSRSDITALAKDRAYAQIHLDNMSIHQALQLGQDANSPYGFIS 429

Query: 328 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 380
           GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEG+ISLSDVFRFLLG
Sbjct: 430 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGVISLSDVFRFLLG 482

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123152|ref|XP_002319007.1| predicted protein [Populus trichocarpa] gi|222857383|gb|EEE94930.1| predicted protein [Populus trichocarpa]

 Score =  553 bits (1424), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 274/357 (76%), Positives = 315/357 (88%), Gaps = 4/357 (1%)

Query: 27  TFEGFAQ-YSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQG 85
           TF+   Q  S ADL++SR RIS+FLSTHT YELLP+SGKV ALDV L VK+AFH+LYEQG
Sbjct: 133 TFQEVIQGMSAADLEVSRHRISAFLSTHTAYELLPESGKVIALDVTLPVKRAFHILYEQG 192

Query: 86  LPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLK 145
           +P  PLWD  KG+FVGVL+ALDFILILRELGT+GSNLTEEELETHTISAWK GK+ L+  
Sbjct: 193 IPTAPLWDFCKGQFVGVLAALDFILILRELGTHGSNLTEEELETHTISAWKEGKMHLS-- 250

Query: 146 RQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLS 205
           RQ+DG+GR   + L+ AGPYDSLK+VA KILQN ++TVPI+HS+   GS  ++L+LASLS
Sbjct: 251 RQIDGSGRAYSKHLIHAGPYDSLKDVASKILQNSISTVPILHSSAQDGSFPQLLHLASLS 310

Query: 206 DILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALL 265
            ILKCICR+F+HS+ SLPILQQP+ SI LGTWVP+IGE N RPFAML+P ASLG+AL+LL
Sbjct: 311 GILKCICRYFRHSAGSLPILQQPICSIPLGTWVPKIGEPNRRPFAMLKPNASLGAALSLL 370

Query: 266 VQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLG 325
           VQA+VSSIPIV+DNDSLLD+YSRSDITALAKDKAYAQIHLDE++IHQALQLGQDAN S G
Sbjct: 371 VQANVSSIPIVNDNDSLLDVYSRSDITALAKDKAYAQIHLDEISIHQALQLGQDANSSYG 430

Query: 326 -FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV 381
            FNGQRCQMCLR+D LHKVMERLANPGVRRL+IVEAGSKRVEG+ISLSDVFRFLLGV
Sbjct: 431 FFNGQRCQMCLRTDSLHKVMERLANPGVRRLLIVEAGSKRVEGVISLSDVFRFLLGV 487

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9965729|gb|AAG10141.1|AF250335_1 putative activator subunit of SNF1-related protein kinase SNF4 [Arabidopsis thaliana]

 Score =  551 bits (1419), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 275/358 (76%), Positives = 310/358 (86%), Gaps = 3/358 (0%)

Query: 25  DRTFEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQ 84
           D + E   + S  DL+LSR RIS  LST T YELLP+SGKV ALDVNL VKQAFH+LYEQ
Sbjct: 27  DPSQEAVPRMSGVDLELSRHRISVLLSTRTAYELLPESGKVIALDVNLPVKQAFHILYEQ 86

Query: 85  GLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNL 144
           G+P+ PLWD  KG+FVGVL  LDFILILRELGT+GSNLTEEELETHTI+AWK GK  ++ 
Sbjct: 87  GIPLAPLWDFGKGQFVGVLGPLDFILILRELGTHGSNLTEEELETHTIAAWKEGKAHIS- 145

Query: 145 KRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASL 204
            RQ DG+GRP PRPLVQ GPYD+LK+VALKILQNKVA VP+I+S+   GS  ++L+LASL
Sbjct: 146 -RQYDGSGRPYPRPLVQVGPYDNLKDVALKILQNKVAAVPVIYSSLQDGSYPQLLHLASL 204

Query: 205 SDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALAL 264
           S ILKCICR+F+HSSSSLPILQQP+ SI LGTWVPRIGE++ +P A LRP ASLGSALAL
Sbjct: 205 SGILKCICRYFRHSSSSLPILQQPICSIPLGTWVPRIGESSSKPLATLRPHASLGSALAL 264

Query: 265 LVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSL 324
           LVQA+VSSIP+VDDNDSL+DIYSRSDITALAKDKAYAQIHLD+M +HQALQLGQDA+P  
Sbjct: 265 LVQAEVSSIPVVDDNDSLIDIYSRSDITALAKDKAYAQIHLDDMTVHQALQLGQDASPPY 324

Query: 325 G-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV 381
           G FNGQRC MCLRSD L KVMERLANPGVRRLVIVEAGSKRVEGIISLSDVF+FLLG+
Sbjct: 325 GIFNGQRCHMCLRSDSLVKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFQFLLGL 382

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542654|ref|XP_002512390.1| AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis] gi|223548351|gb|EEF49842.1| AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis]

 Score =  550 bits (1418), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 283/376 (75%), Positives = 318/376 (84%), Gaps = 7/376 (1%)

Query: 1   MFVLRETAWCRMI-NVKTTFREDYLDRTF---EGFAQYSEADLQLSRDRISSFLSTHTVY 56
           +F+ RE      I N +T      LD  F   E   + SEADL++SR R S+FLSTHT Y
Sbjct: 94  VFLPREPNMVPPIPNSETAGSNMELDEVFLRPEVSPRGSEADLEVSRHRFSAFLSTHTAY 153

Query: 57  ELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELG 116
           ELLP+SGKV ALDVNL VKQAFHVLYEQG+P+ PLWD  KG+FVGVLSALDFILILRELG
Sbjct: 154 ELLPESGKVIALDVNLPVKQAFHVLYEQGVPLAPLWDFCKGQFVGVLSALDFILILRELG 213

Query: 117 TNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKIL 176
            +GSNLTEEELETHTISAWK GKL LN  RQ+DG+GR  PR L+ AGPYDSLK+VALKIL
Sbjct: 214 NHGSNLTEEELETHTISAWKEGKLHLN--RQIDGDGRAYPRSLIHAGPYDSLKDVALKIL 271

Query: 177 QNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 236
           QN V+T+PIIHS+   GS  ++L+LASLS ILKCICRHF+HS+SSLP+LQQP+ SI LGT
Sbjct: 272 QNNVSTIPIIHSSSRDGSFPQLLHLASLSGILKCICRHFRHSASSLPVLQQPICSIPLGT 331

Query: 237 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 296
           WVP+IGE+N RPFAMLRP ASLG AL+LLVQA+VSSIPIVDDNDSLLDIYSRSDITALAK
Sbjct: 332 WVPKIGESNVRPFAMLRPNASLGDALSLLVQAEVSSIPIVDDNDSLLDIYSRSDITALAK 391

Query: 297 DKAYAQIHLDEMNIHQALQLGQDANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRL 355
           DKAYAQIHLD+++IHQALQLGQDAN   G FNGQRCQMCL SDPLHKVMERLANPGVRRL
Sbjct: 392 DKAYAQIHLDKISIHQALQLGQDANSPYGFFNGQRCQMCLGSDPLHKVMERLANPGVRRL 451

Query: 356 VIVEAGSKRVEGIISL 371
           +IVEAGSKRVEG+ISL
Sbjct: 452 LIVEAGSKRVEGVISL 467

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123752|ref|XP_002330199.1| predicted protein [Populus trichocarpa] gi|222871655|gb|EEF08786.1| predicted protein [Populus trichocarpa]

 Score =  549 bits (1415), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 270/348 (77%), Positives = 309/348 (88%), Gaps = 3/348 (0%)

Query: 35  SEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDD 94
           S  +L++SR RIS+FLSTHT YELLP+SGKV ALDV L VKQAFH+LYEQG+PM PLWD 
Sbjct: 130 SATELEVSRHRISAFLSTHTAYELLPESGKVIALDVTLPVKQAFHILYEQGIPMAPLWDF 189

Query: 95  FKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRP 154
            KG+FVGVL+ALDFILILRELGT+GSNLTEEELETHTISAWK GK+ LN  RQ+DG+GR 
Sbjct: 190 CKGQFVGVLTALDFILILRELGTHGSNLTEEELETHTISAWKEGKMHLN--RQIDGSGRA 247

Query: 155 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRH 214
             + L+ AGPYDS+K+V+LKILQN V+TVPIIHS    GS  ++L+LASLS ILKCICR+
Sbjct: 248 YSKHLIHAGPYDSMKDVSLKILQNSVSTVPIIHSASQDGSFPQLLHLASLSGILKCICRY 307

Query: 215 FKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIP 274
           F+HS+ SLPILQQP+ SI LGTWVP+IGE N RPFAMLRP ASLG+AL+LL QA+VSSIP
Sbjct: 308 FRHSAGSLPILQQPICSIPLGTWVPKIGEPNRRPFAMLRPNASLGAALSLLAQANVSSIP 367

Query: 275 IVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF-NGQRCQM 333
           IV+DNDSLLD+YSRSDITALAKDKAYAQIHLDE++IHQALQLGQ+AN S  F NGQRCQM
Sbjct: 368 IVNDNDSLLDVYSRSDITALAKDKAYAQIHLDEISIHQALQLGQNANSSNAFYNGQRCQM 427

Query: 334 CLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV 381
           CLR+D LHKVMERLANPGVRRL+IVEAGSKRVEG+ISLSDVFRFLLG+
Sbjct: 428 CLRTDSLHKVMERLANPGVRRLLIVEAGSKRVEGVISLSDVFRFLLGI 475

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18390971|ref|NP_563834.1| sucrose nonfermenting 4-like protein [Arabidopsis thaliana] gi|75249553|sp|Q944A6.1|SNF4_ARATH RecName: Full=Sucrose nonfermenting 4-like protein; Short=SNF4; AltName: Full=CBS domain-containing protein CBSCBS3; AltName: Full=SNF1-related protein kinase regulatory subunit betagamma; Short=AKIN subunit betagamma; Short=AKINbetagamma gi|16612255|gb|AAL27498.1|AF439826_1 At1g09020/F7G19_11 [Arabidopsis thaliana] gi|23308443|gb|AAN18191.1| At1g09020/F7G19_11 [Arabidopsis thaliana] gi|75037070|gb|ABA12450.1| AKINbetagamma [Arabidopsis thaliana] gi|332190262|gb|AEE28383.1| sucrose nonfermenting 4-like protein [Arabidopsis thaliana]

 Score =  548 bits (1413), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 275/358 (76%), Positives = 310/358 (86%), Gaps = 3/358 (0%)

Query: 25  DRTFEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQ 84
           D + E   + S  DL+LSR RIS  LST T YELLP+SGKV ALDVNL VKQAFH+LYEQ
Sbjct: 132 DPSQEAVPRMSGVDLELSRHRISVLLSTRTAYELLPESGKVIALDVNLPVKQAFHILYEQ 191

Query: 85  GLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNL 144
           G+P+ PLWD  KG+FVGVL  LDFILILRELGT+GSNLTEEELETHTI+AWK GK  ++ 
Sbjct: 192 GIPLAPLWDFGKGQFVGVLGPLDFILILRELGTHGSNLTEEELETHTIAAWKEGKAHIS- 250

Query: 145 KRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASL 204
            RQ DG+GRP PRPLVQ GPYD+LK+VALKILQNKVA VP+I+S+   GS  ++L+LASL
Sbjct: 251 -RQYDGSGRPYPRPLVQVGPYDNLKDVALKILQNKVAAVPVIYSSLQDGSYPQLLHLASL 309

Query: 205 SDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALAL 264
           S ILKCICR+F+HSSSSLPILQQP+ SI LGTWVPRIGE++ +P A LRP ASLGSALAL
Sbjct: 310 SGILKCICRYFRHSSSSLPILQQPICSIPLGTWVPRIGESSSKPLATLRPHASLGSALAL 369

Query: 265 LVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSL 324
           LVQA+VSSIP+VDDNDSL+DIYSRSDITALAKDKAYAQIHLD+M +HQALQLGQDA+P  
Sbjct: 370 LVQAEVSSIPVVDDNDSLIDIYSRSDITALAKDKAYAQIHLDDMTVHQALQLGQDASPPY 429

Query: 325 G-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV 381
           G FNGQRC MCLRSD L KVMERLANPGVRRLVIVEAGSKRVEGIISLSDVF+FLLG+
Sbjct: 430 GIFNGQRCHMCLRSDSLVKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFQFLLGL 487

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312281727|dbj|BAJ33729.1| unnamed protein product [Thellungiella halophila]

 Score =  546 bits (1408), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 273/358 (76%), Positives = 309/358 (86%), Gaps = 3/358 (0%)

Query: 25  DRTFEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQ 84
           D   E   + S  DL++SR RIS  LST T YELLP+SGKV ALDVNL VKQAFH+LYEQ
Sbjct: 132 DSPQESIPRMSSVDLEVSRHRISVLLSTRTAYELLPESGKVIALDVNLPVKQAFHILYEQ 191

Query: 85  GLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNL 144
           G+P+ PLWD  KG+FVGVL  LDFILILRELGT+GSNLTEEELETHTI+AWK GK  ++ 
Sbjct: 192 GIPLAPLWDFGKGQFVGVLGPLDFILILRELGTHGSNLTEEELETHTIAAWKEGKAHIS- 250

Query: 145 KRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASL 204
            RQ DG+GRP PRPLVQ GPYD+LK+VALKILQNKVA VP+I+S+   GS  ++L+LASL
Sbjct: 251 -RQFDGSGRPYPRPLVQVGPYDNLKDVALKILQNKVAAVPVIYSSLQDGSYPQLLHLASL 309

Query: 205 SDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALAL 264
           S ILKCICR+F+HSSSSLPILQQP+ SI LGTWVPRIGE++ +P A LRP ASLGSAL+L
Sbjct: 310 SGILKCICRYFRHSSSSLPILQQPICSIPLGTWVPRIGESSSKPLATLRPHASLGSALSL 369

Query: 265 LVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSL 324
           LVQA+VSSIP+VDDNDSL+DIYSRSDITALAKDKAYAQIHLD+M +HQALQLGQDA+P  
Sbjct: 370 LVQAEVSSIPVVDDNDSLIDIYSRSDITALAKDKAYAQIHLDDMTVHQALQLGQDASPPY 429

Query: 325 G-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV 381
           G FNGQRC MCLRSD L KVMERLANPGVRRLVIVEAGSKRVEGIISLSDVF+FLLG+
Sbjct: 430 GIFNGQRCHMCLRSDSLLKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFQFLLGL 487

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297849192|ref|XP_002892477.1| hypothetical protein ARALYDRAFT_470981 [Arabidopsis lyrata subsp. lyrata] gi|297338319|gb|EFH68736.1| hypothetical protein ARALYDRAFT_470981 [Arabidopsis lyrata subsp. lyrata]

 Score =  545 bits (1405), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 274/359 (76%), Positives = 310/359 (86%), Gaps = 3/359 (0%)

Query: 24  LDRTFEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYE 83
           +D  F   A  S  DL++SR RIS  LST T YELLP+SGKV ALDVNL VKQAFH+LYE
Sbjct: 123 VDDVFLRTADPSGVDLEVSRHRISVLLSTRTAYELLPESGKVIALDVNLPVKQAFHILYE 182

Query: 84  QGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 143
           QG+P+ PLWD  KG+FVGVL  LDFILILRELGT+GSNLTEEELETHTI+AWK GK  ++
Sbjct: 183 QGIPLAPLWDFGKGQFVGVLGPLDFILILRELGTHGSNLTEEELETHTIAAWKEGKAHIS 242

Query: 144 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLAS 203
             RQ DG+GRP PRPLVQ GPYD+LK+VALKILQNKVA VP+I+S+   GS  ++L+LAS
Sbjct: 243 --RQFDGSGRPYPRPLVQVGPYDNLKDVALKILQNKVAAVPVIYSSLQDGSYPQLLHLAS 300

Query: 204 LSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALA 263
           LS ILKCICR+F+HSSSSLPILQQP+ SI LGTWVPRIGE++ +P A LRP ASLGSALA
Sbjct: 301 LSGILKCICRYFRHSSSSLPILQQPICSIPLGTWVPRIGESSSKPLATLRPHASLGSALA 360

Query: 264 LLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPS 323
           LLVQA+VSSIP+VDDNDSL+DIYSRSDITALAKDKAYAQIHLD+M +HQALQLGQD++P 
Sbjct: 361 LLVQAEVSSIPVVDDNDSLIDIYSRSDITALAKDKAYAQIHLDDMTVHQALQLGQDSSPP 420

Query: 324 LG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV 381
            G FNGQRC MCLRSD L KVMERLANPGVRRLVIVEAGSKRVEGIISLSDVF+FLLG+
Sbjct: 421 YGIFNGQRCHMCLRSDSLVKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFQFLLGL 479

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450664|ref|XP_004143082.1| PREDICTED: sucrose nonfermenting 4-like protein-like [Cucumis sativus] gi|449523153|ref|XP_004168589.1| PREDICTED: sucrose nonfermenting 4-like protein-like [Cucumis sativus]

 Score =  515 bits (1327), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 258/355 (72%), Positives = 295/355 (83%), Gaps = 2/355 (0%)

Query: 26  RTFEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQG 85
           R  E     SEADLQ SR RIS+FLSTHTVYELLP+SGKV ALD++L VKQAFH+L+EQG
Sbjct: 139 RLSEAVHSISEADLQCSRHRISAFLSTHTVYELLPESGKVVALDIDLPVKQAFHILHEQG 198

Query: 86  LPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLK 145
           +P  PLWD  KG+FVGVLSA DFILIL+ELG  GSNLTEEELETHTISAWK GK  LN +
Sbjct: 199 IPTAPLWDFSKGQFVGVLSASDFILILKELGKRGSNLTEEELETHTISAWKEGKAYLNGR 258

Query: 146 RQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLS 205
             +DG GR   R  + A P+D+LK+VALKILQN+VATVPIIHS+   GS  ++L+LASLS
Sbjct: 259 --VDGQGRFLSRQFIHAEPFDNLKDVALKILQNQVATVPIIHSSAEDGSFPQLLHLASLS 316

Query: 206 DILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALL 265
            ILKCICR+F+H SS LP+LQ P+ +I +GTWVP+IGE+NGRP AMLRP+ASL SAL LL
Sbjct: 317 GILKCICRYFRHCSSLLPVLQLPIFAIPVGTWVPKIGESNGRPLAMLRPSASLSSALNLL 376

Query: 266 VQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLG 325
           +QA VSSIPIVDDNDSLLD+Y RSDITALAKD+AY  I+LDEM IHQALQLGQD+     
Sbjct: 377 IQAQVSSIPIVDDNDSLLDVYCRSDITALAKDRAYTHINLDEMTIHQALQLGQDSFSLYE 436

Query: 326 FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 380
              QRCQMCLRSD LHKVM+RLANPGVRRLVIVEAGSKRVEGIISLSD+F+FLLG
Sbjct: 437 PRSQRCQMCLRSDSLHKVMDRLANPGVRRLVIVEAGSKRVEGIISLSDIFKFLLG 491

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	381
TAIR|locus:2036079	487	SNF4 "homolog of yeast sucrose	0.931	0.728	0.768	2.6e-141
RGD|727782	326	Prkag2 "protein kinase, AMP-ac	0.514	0.601	0.285	3.5e-30
UNIPROTKB|F1LLY5	528	Prkag2 "Protein Prkag2" [Rattu	0.514	0.371	0.285	1e-28
MGI|MGI:1336153	566	Prkag2 "protein kinase, AMP-ac	0.514	0.346	0.285	1.7e-28
UNIPROTKB|Q9UGJ0	569	PRKAG2 "5'-AMP-activated prote	0.514	0.344	0.285	4.1e-28
UNIPROTKB|F1NXL4	565	PRKAG2 "Uncharacterized protei	0.511	0.345	0.284	4.3e-28
ZFIN|ZDB-GENE-060421-6938	342	zgc:136850 "zgc:136850" [Danio	0.506	0.564	0.291	2.7e-27
DICTYBASE|DDB_G0272542	577	prkag "AMP-activated protein k	0.433	0.285	0.311	3.1e-26
UNIPROTKB|F1P1P1	382	PRKAG3 "Uncharacterized protei	0.514	0.513	0.258	1.4e-24
CGD|CAL0001497	336	SNF4 [Candida albicans (taxid:	0.501	0.568	0.262	4.7e-18

TAIR|locus:2036079 SNF4 "homolog of yeast sucrose nonfermenting 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1382 (491.5 bits), Expect = 2.6e-141, P = 2.6e-141
 Identities = 275/358 (76%), Positives = 310/358 (86%)

Query:    25 DRTFEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQ 84
             D + E   + S  DL+LSR RIS  LST T YELLP+SGKV ALDVNL VKQAFH+LYEQ
Sbjct:   132 DPSQEAVPRMSGVDLELSRHRISVLLSTRTAYELLPESGKVIALDVNLPVKQAFHILYEQ 191

Query:    85 GLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNL 144
             G+P+ PLWD  KG+FVGVL  LDFILILRELGT+GSNLTEEELETHTI+AWK GK  ++ 
Sbjct:   192 GIPLAPLWDFGKGQFVGVLGPLDFILILRELGTHGSNLTEEELETHTIAAWKEGKAHIS- 250

Query:   145 KRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASL 204
              RQ DG+GRP PRPLVQ GPYD+LK+VALKILQNKVA VP+I+S+   GS  ++L+LASL
Sbjct:   251 -RQYDGSGRPYPRPLVQVGPYDNLKDVALKILQNKVAAVPVIYSSLQDGSYPQLLHLASL 309

Query:   205 SDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALAL 264
             S ILKCICR+F+HSSSSLPILQQP+ SI LGTWVPRIGE++ +P A LRP ASLGSALAL
Sbjct:   310 SGILKCICRYFRHSSSSLPILQQPICSIPLGTWVPRIGESSSKPLATLRPHASLGSALAL 369

Query:   265 LVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSL 324
             LVQA+VSSIP+VDDNDSL+DIYSRSDITALAKDKAYAQIHLD+M +HQALQLGQDA+P  
Sbjct:   370 LVQAEVSSIPVVDDNDSLIDIYSRSDITALAKDKAYAQIHLDDMTVHQALQLGQDASPPY 429

Query:   325 G-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV 381
             G FNGQRC MCLRSD L KVMERLANPGVRRLVIVEAGSKRVEGIISLSDVF+FLLG+
Sbjct:   430 GIFNGQRCHMCLRSDSLVKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFQFLLGL 487

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0030295 "protein kinase activator activity" evidence=ISS

GO:0042149 "cellular response to glucose starvation" evidence=IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IDA

GO:0046777 "protein autophosphorylation" evidence=IDA

RGD|727782 Prkag2 "protein kinase, AMP-activated, gamma 2 non-catalytic subunit" [Rattus norvegicus (taxid:10116)]

 Score = 207 (77.9 bits), Expect = 3.5e-30, Sum P(2) = 3.5e-30
 Identities = 64/224 (28%), Positives = 115/224 (51%)

Query:   157 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 216
             +PLV   P  SL +    +++NK+  +P+I     +G+    LY+ +   ILK + + F 
Sbjct:   116 KPLVNISPDASLFDAVYSLIKNKIHRLPVIDPI--SGNA---LYILTHKRILKFL-QLFM 169

Query:   217 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 276
                     ++Q +  + +GT+            A + P   +  AL + V+  +S++P+V
Sbjct:   170 SDMPKPAFMKQNLDELGIGTY---------HNIAFIHPNTPIIKALNIFVERRISALPVV 220

Query:   277 DDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLR 336
             D++  ++DIYS+ D+  LA +K Y  +   ++ + QALQ     + S  F G     C +
Sbjct:   221 DESGKVVDIYSKFDVINLAAEKTYNNL---DITVTQALQ-----HRSQYFEG--VVKCSK 270

Query:   337 SDPLHKVMERLANPGVRRLVIV-EAGSKRVEGIISLSDVFRFLL 379
              + L  +++R+    V RLV+V EA S  + GIISLSD+ + L+
Sbjct:   271 LETLETIVDRIVRAEVHRLVVVNEADS--IVGIISLSDILQALI 312

GO:0004862 "cAMP-dependent protein kinase inhibitor activity" evidence=ISO

GO:0005524 "ATP binding" evidence=ISO

GO:0005977 "glycogen metabolic process" evidence=ISO

GO:0006110 "regulation of glycolysis" evidence=ISO

GO:0006469 "negative regulation of protein kinase activity" evidence=ISO

GO:0007243 "intracellular protein kinase cascade" evidence=ISO

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=ISO

GO:0008607 "phosphorylase kinase regulator activity" evidence=ISO

GO:0010800 "positive regulation of peptidyl-threonine phosphorylation" evidence=ISO

GO:0016208 "AMP binding" evidence=IDA

GO:0019217 "regulation of fatty acid metabolic process" evidence=ISO

GO:0019901 "protein kinase binding" evidence=ISO;IPI

GO:0030295 "protein kinase activator activity" evidence=ISO

GO:0031588 "AMP-activated protein kinase complex" evidence=ISO;IDA

GO:0043531 "ADP binding" evidence=ISO

GO:0045860 "positive regulation of protein kinase activity" evidence=ISO

GO:0050790 "regulation of catalytic activity" evidence=IDA

GO:0004679 "AMP-activated protein kinase activity" evidence=IMP;IDA

UNIPROTKB|F1LLY5 Prkag2 "Protein Prkag2" [Rattus norvegicus (taxid:10116)]

 Score = 207 (77.9 bits), Expect = 1.0e-28, Sum P(2) = 1.0e-28
 Identities = 64/224 (28%), Positives = 115/224 (51%)

Query:   157 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 216
             +PLV   P  SL +    +++NK+  +P+I     +G+    LY+ +   ILK + + F 
Sbjct:   318 KPLVNISPDASLFDAVYSLIKNKIHRLPVIDPI--SGNA---LYILTHKRILKFL-QLFM 371

Query:   217 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 276
                     ++Q +  + +GT+            A + P   +  AL + V+  +S++P+V
Sbjct:   372 SDMPKPAFMKQNLDELGIGTY---------HNIAFIHPNTPIIKALNIFVERRISALPVV 422

Query:   277 DDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLR 336
             D++  ++DIYS+ D+  LA +K Y  +   ++ + QALQ     + S  F G     C +
Sbjct:   423 DESGKVVDIYSKFDVINLAAEKTYNNL---DITVTQALQ-----HRSQYFEG--VVKCSK 472

Query:   337 SDPLHKVMERLANPGVRRLVIV-EAGSKRVEGIISLSDVFRFLL 379
              + L  +++R+    V RLV+V EA S  + GIISLSD+ + L+
Sbjct:   473 LETLETIVDRIVRAEVHRLVVVNEADS--IVGIISLSDILQALI 514

GO:0004862 "cAMP-dependent protein kinase inhibitor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005977 "glycogen metabolic process" evidence=IEA

GO:0006110 "regulation of glycolysis" evidence=IEA

GO:0007243 "intracellular protein kinase cascade" evidence=IEA

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

GO:0008607 "phosphorylase kinase regulator activity" evidence=IEA

GO:0010800 "positive regulation of peptidyl-threonine phosphorylation" evidence=IEA

GO:0019217 "regulation of fatty acid metabolic process" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0030295 "protein kinase activator activity" evidence=IEA

GO:0031588 "AMP-activated protein kinase complex" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

MGI|MGI:1336153 Prkag2 "protein kinase, AMP-activated, gamma 2 non-catalytic subunit" [Mus musculus (taxid:10090)]

 Score = 206 (77.6 bits), Expect = 1.7e-28, Sum P(2) = 1.7e-28
 Identities = 64/224 (28%), Positives = 115/224 (51%)

Query:   157 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 216
             +PLV   P  SL +    +++NK+  +P+I     +G+    LY+ +   ILK + + F 
Sbjct:   356 KPLVNISPDASLFDAVYSLIKNKIHRLPVIDPI--SGNA---LYILTHKRILKFL-QLFM 409

Query:   217 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 276
                     ++Q +  + +GT+            A + P   +  AL + V+  +S++P+V
Sbjct:   410 SDMPKPAFMKQNLDELGIGTY---------HNIAFIHPDTPIIKALNIFVERRISALPVV 460

Query:   277 DDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLR 336
             D++  ++DIYS+ D+  LA +K Y  +   ++ + QALQ     + S  F G     C +
Sbjct:   461 DESGKVVDIYSKFDVINLAAEKTYNNL---DITVTQALQ-----HRSQYFEG--VVKCSK 510

Query:   337 SDPLHKVMERLANPGVRRLVIV-EAGSKRVEGIISLSDVFRFLL 379
              + L  +++R+    V RLV+V EA S  + GIISLSD+ + L+
Sbjct:   511 LETLETIVDRIVRAEVHRLVVVNEADS--IVGIISLSDILQALI 552

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004679 "AMP-activated protein kinase activity" evidence=ISO;TAS

GO:0004862 "cAMP-dependent protein kinase inhibitor activity" evidence=ISO

GO:0005524 "ATP binding" evidence=ISO

GO:0005977 "glycogen metabolic process" evidence=ISO

GO:0006110 "regulation of glycolysis" evidence=ISO

GO:0006468 "protein phosphorylation" evidence=TAS

GO:0006469 "negative regulation of protein kinase activity" evidence=ISO

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0006950 "response to stress" evidence=TAS

GO:0007243 "intracellular protein kinase cascade" evidence=ISO

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=ISO

GO:0008607 "phosphorylase kinase regulator activity" evidence=ISO

GO:0010800 "positive regulation of peptidyl-threonine phosphorylation" evidence=ISO

GO:0016208 "AMP binding" evidence=ISO

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0019217 "regulation of fatty acid metabolic process" evidence=ISO

GO:0019901 "protein kinase binding" evidence=ISO

GO:0030295 "protein kinase activator activity" evidence=ISO

GO:0031588 "AMP-activated protein kinase complex" evidence=ISO

GO:0043531 "ADP binding" evidence=ISO

GO:0045860 "positive regulation of protein kinase activity" evidence=ISO

GO:0050790 "regulation of catalytic activity" evidence=ISO

UNIPROTKB|Q9UGJ0 PRKAG2 "5'-AMP-activated protein kinase subunit gamma-2" [Homo sapiens (taxid:9606)]

 Score = 203 (76.5 bits), Expect = 4.1e-28, Sum P(2) = 4.1e-28
 Identities = 64/224 (28%), Positives = 115/224 (51%)

Query:   157 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 216
             +PLV   P  SL +    +++NK+  +P+I     +G+    LY+ +   ILK + + F 
Sbjct:   359 KPLVNISPDASLFDAVYSLIKNKIHRLPVIDPI--SGNA---LYILTHKRILKFL-QLFM 412

Query:   217 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 276
                     ++Q +  + +GT+            A + P   +  AL + V+  +S++P+V
Sbjct:   413 SDMPKPAFMKQNLDELGIGTY---------HNIAFIHPDTPIIKALNIFVERRISALPVV 463

Query:   277 DDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLR 336
             D++  ++DIYS+ D+  LA +K Y  +   ++ + QALQ     + S  F G     C +
Sbjct:   464 DESGKVVDIYSKFDVINLAAEKTYNNL---DITVTQALQ-----HRSQYFEG--VVKCNK 513

Query:   337 SDPLHKVMERLANPGVRRLVIV-EAGSKRVEGIISLSDVFRFLL 379
              + L  +++R+    V RLV+V EA S  + GIISLSD+ + L+
Sbjct:   514 LEILETIVDRIVRAEVHRLVVVNEADS--IVGIISLSDILQALI 555

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006112 "energy reserve metabolic process" evidence=TAS

GO:0006853 "carnitine shuttle" evidence=TAS

GO:0007050 "cell cycle arrest" evidence=TAS

GO:0008286 "insulin receptor signaling pathway" evidence=TAS

GO:0042304 "regulation of fatty acid biosynthetic process" evidence=TAS

GO:0044255 "cellular lipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0046320 "regulation of fatty acid oxidation" evidence=TAS

GO:0004862 "cAMP-dependent protein kinase inhibitor activity" evidence=IDA

GO:0006469 "negative regulation of protein kinase activity" evidence=IDA

GO:0005977 "glycogen metabolic process" evidence=IMP

GO:0006110 "regulation of glycolysis" evidence=IMP

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IMP

GO:0008607 "phosphorylase kinase regulator activity" evidence=IMP

GO:0019901 "protein kinase binding" evidence=IDA

GO:0031588 "AMP-activated protein kinase complex" evidence=IDA

GO:0043531 "ADP binding" evidence=IDA

GO:0045860 "positive regulation of protein kinase activity" evidence=IMP

GO:0046324 "regulation of glucose import" evidence=TAS

GO:0010800 "positive regulation of peptidyl-threonine phosphorylation" evidence=IMP

GO:0005524 "ATP binding" evidence=IDA

GO:0030295 "protein kinase activator activity" evidence=IMP

GO:0007243 "intracellular protein kinase cascade" evidence=IMP

GO:0006754 "ATP biosynthetic process" evidence=TAS

GO:0016126 "sterol biosynthetic process" evidence=TAS

GO:0019217 "regulation of fatty acid metabolic process" evidence=IMP

UNIPROTKB|F1NXL4 PRKAG2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 201 (75.8 bits), Expect = 4.3e-28, Sum P(2) = 4.3e-28
 Identities = 64/225 (28%), Positives = 116/225 (51%)

Query:   157 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 216
             +PLV   P  SL +    +++NK+  +P+I     +G+    LY+ +   ILK + + F 
Sbjct:   355 KPLVNISPDASLFDAVYSLIKNKIHRLPVIDPV--SGNA---LYILTHKRILKFL-QLFM 408

Query:   217 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 276
                     +++ +  + +GT+            A + P   +  AL + V+  +S++P+V
Sbjct:   409 SEMPKPAFMKKNLDELGIGTY---------HNIAFIHPDTPIIKALNIFVERRISALPVV 459

Query:   277 DDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQ-RCQMCL 335
             D++  ++DIYS+ D+  LA +K Y  +   ++ + QALQ     + S  F G  +C M  
Sbjct:   460 DESGKVVDIYSKFDVINLAAEKTYNNL---DITVTQALQ-----HRSQYFEGVVKCSML- 510

Query:   336 RSDPLHKVMERLANPGVRRLVIV-EAGSKRVEGIISLSDVFRFLL 379
               + L  +++R+    V RLV+V EA S  + GIISLSD+ + L+
Sbjct:   511 --ETLETIVDRIVKAEVHRLVVVNEADS--IVGIISLSDILQALV 551

GO:0004862 "cAMP-dependent protein kinase inhibitor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005977 "glycogen metabolic process" evidence=IEA

GO:0006110 "regulation of glycolysis" evidence=IEA

GO:0007243 "intracellular protein kinase cascade" evidence=IEA

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

GO:0008607 "phosphorylase kinase regulator activity" evidence=IEA

GO:0010800 "positive regulation of peptidyl-threonine phosphorylation" evidence=IEA

GO:0019217 "regulation of fatty acid metabolic process" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0030295 "protein kinase activator activity" evidence=IEA

GO:0031588 "AMP-activated protein kinase complex" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

ZFIN|ZDB-GENE-060421-6938 zgc:136850 "zgc:136850" [Danio rerio (taxid:7955)]

 Score = 186 (70.5 bits), Expect = 2.7e-27, Sum P(2) = 2.7e-27
 Identities = 65/223 (29%), Positives = 113/223 (50%)

Query:   159 LVQAGPYDSLKEVALKILQNKVATVPIIH-STGPAGSCQEILYLASLSDILKCICRHFKH 217
             L+   P  SL E    +L+NK+  +P+I   TG       +L++ +   ILK +  H   
Sbjct:   137 LISIAPDSSLFEAIYSLLKNKIHRLPVIDPETG------NVLHILTHKRILKFL--HIFG 188

Query:   218 SSSSLP-ILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 276
             S    P  LQ+ +  +++GT+         +  A ++ T ++  AL + V+  VS++P+V
Sbjct:   189 SMIPKPRFLQKRIEEVEIGTF---------KSIATVKETETVYDALTIFVERRVSALPVV 239

Query:   277 DDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLR 336
             ++   ++ +YSR D+  LA  K Y   HL+ M + +A+Q G+         G     C  
Sbjct:   240 NEQGKVVALYSRFDVINLAAQKTYN--HLN-MTMAEAIQ-GRWCC----IEG--VLKCYP 289

Query:   337 SDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 379
              + L  V++R+A   V RLV+V+     V GI+SLSD+ + L+
Sbjct:   290 HETLETVIDRIAEAEVHRLVLVDTEDV-VRGIVSLSDLLQALV 331

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0272542 prkag "AMP-activated protein kinase gamma subunit" [Dictyostelium discoideum (taxid:44689)]

 Score = 190 (71.9 bits), Expect = 3.1e-26, Sum P(2) = 3.1e-26
 Identities = 57/183 (31%), Positives = 93/183 (50%)

Query:   198 ILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTAS 257
             IL++ + S IL  + + F      L  L  P+ S+ +GT+   +      P         
Sbjct:   404 ILHILTHSRILAFMMKSFPQLPEKL--LSIPIGSLGIGTFATVVTVMTHTP--------- 452

Query:   258 LGSALALLVQADVSSIPIVDDNDS-LLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL 316
             L   L LL +  +S++PI+D   S ++D+YS+SD+T ++K    +   L+ + +HQ L  
Sbjct:   453 LVEVLELLSEKKISAVPIIDSETSKIVDVYSKSDVTLMSKQGILSPSDLN-LPVHQVLS- 510

Query:   317 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 376
                    L    ++   C R D L  V+ER     V RLV +++ SK+VEGI+SLSD+  
Sbjct:   511 ---TFTKLWQRPEQIYTCTRFDKLGDVIERCIKKRVHRLVCIDS-SKKVEGILSLSDILN 566

Query:   377 FLL 379
             +LL
Sbjct:   567 YLL 569

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

UNIPROTKB|F1P1P1 PRKAG3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 175 (66.7 bits), Expect = 1.4e-24, Sum P(2) = 1.4e-24
 Identities = 58/224 (25%), Positives = 116/224 (51%)

Query:   157 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 216
             +PLV   P DSL +    ++++K+  +P+I     +G+   +L++ +   ILK +  H  
Sbjct:   175 KPLVYISPSDSLFDAVYSLIKHKIHRLPVIEPI--SGN---VLHILTHKRILKFL--HIF 227

Query:   217 HSSSSLP-ILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPI 275
              S+   P  L++ V  + +GT+         R  A++   A + +AL + V   VS++P+
Sbjct:   228 GSTIPKPRFLKKTVQELCVGTF---------RDVAVVPENAPVYAALEIFVDRRVSALPV 278

Query:   276 VDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCL 335
             V+    ++ +YSR D+  LA  K Y  +   ++++ +AL+       ++   G     C 
Sbjct:   279 VNAAGQVVGLYSRFDVIHLAAQKTYNNL---DISVREALR-----QRTVCLEG--VLTCY 328

Query:   336 RSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 379
               + +  +++R+A   V RLV+V+  ++   GI+SLSD+ + L+
Sbjct:   329 PHETMEDIIDRIAEEQVHRLVLVDE-NRYPRGIVSLSDILQALV 371

GO:0005978 "glycogen biosynthetic process" evidence=IEA

GO:0015758 "glucose transport" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

CGD|CAL0001497 SNF4 [Candida albicans (taxid:5476)]

 Score = 152 (58.6 bits), Expect = 4.7e-18, Sum P(2) = 4.7e-18
 Identities = 57/217 (26%), Positives = 102/217 (47%)

Query:   164 PYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLP 223
             P+ SL E  +K+L++K   +P+I         + ++ + +   ILK +  + K +     
Sbjct:   141 PFKSLYEACVKMLESKARRIPLIDEDEKTKR-EIVVSVLTQYRILKFVALNCKETK---- 195

Query:   224 ILQQPVSSIQ-LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSL 282
             +L +P+ ++  LG  V ++         M  P   +   + LL +  VSSIPIVD    L
Sbjct:   196 MLLKPLKNLSGLGD-VKKLSTCT-----MDTPVIEV---IHLLTENSVSSIPIVDGQGKL 246

Query:   283 LDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHK 342
             +++Y   DI AL K   Y  +   ++++  AL        S  F G     C  +D L  
Sbjct:   247 INVYEAVDILALVKGGMYTDL---DLSVGDAL-----LRRSEEFEG--VHTCTLNDRLST 296

Query:   343 VMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 379
             +M+ +    + RL +V+   K V  +I+LSD+  ++L
Sbjct:   297 IMDTIRKSRLHRLFVVDDEGKLVS-VITLSDILNYIL 332

GO:0031588 "AMP-activated protein kinase complex" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005641 "nuclear envelope lumen" evidence=IEA

GO:0030447 "filamentous growth" evidence=IMP

GO:0007031 "peroxisome organization" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0001302 "replicative cell aging" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0045722 "positive regulation of gluconeogenesis" evidence=IEA

GO:0009267 "cellular response to starvation" evidence=IMP

GO:0036170 "filamentous growth of a population of unicellular organisms in response to starvation" evidence=IMP

GO:0036180 "filamentous growth of a population of unicellular organisms in response to biotic stimulus" evidence=IMP

GO:0071216 "cellular response to biotic stimulus" evidence=IMP

GO:0004679 "AMP-activated protein kinase activity" evidence=IEA

GO:0043539 "protein serine/threonine kinase activator activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q944A6	SNF4_ARATH	No assigned EC number	0.7681	0.9317	0.7289	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	381
cd04641	120	cd04641, CBS_pair_28, The CBS domain, named after	7e-37
cd04618	98	cd04618, CBS_pair_5, The CBS domain, named after h	1e-19
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	6e-11
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	2e-07
smart00116	49	smart00116, CBS, Domain in cystathionine beta-synt	3e-07
cd04623	113	cd04623, CBS_pair_10, The CBS domain, named after	8e-06
cd04612	111	cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont	1e-05
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	2e-05
pfam00571	57	pfam00571, CBS, CBS domain	2e-05
cd04588	110	cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This c	2e-05
cd04593	115	cd04593, CBS_pair_EriC_assoc_bac_arch, This cd con	4e-05
cd04622	113	cd04622, CBS_pair_9, The CBS domain, named after h	5e-05
cd04802	112	cd04802, CBS_pair_3, The CBS domain, named after h	9e-05
cd04800	111	cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This c	2e-04
cd04627	123	cd04627, CBS_pair_14, The CBS domain, named after	4e-04
cd04642	126	cd04642, CBS_pair_29, The CBS domain, named after	7e-04
cd04601	110	cd04601, CBS_pair_IMPDH, This cd contains two tand	8e-04
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	0.001
cd04631	125	cd04631, CBS_pair_18, The CBS domain, named after	0.001
pfam00571	57	pfam00571, CBS, CBS domain	0.002
cd04621	135	cd04621, CBS_pair_8, The CBS domain, named after h	0.002
cd04612	111	cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont	0.003
cd04611	111	cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd co	0.003
cd04595	110	cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd con	0.003
cd04638	106	cd04638, CBS_pair_25, The CBS domain, named after	0.003
cd04635	122	cd04635, CBS_pair_22, The CBS domain, named after	0.003

>gnl|CDD|240012 cd04641, CBS_pair_28, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score =  129 bits (326), Expect = 7e-37
 Identities = 52/134 (38%), Positives = 72/134 (53%), Gaps = 17/134 (12%)

Query: 247 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLD 306
           +  A  RP   L   L +LV+  VS++PIVD+N  ++D+YSR D+  LAK+ AY  + L 
Sbjct: 1   KNIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAYNNLDLT 60

Query: 307 EMNIHQALQLGQDANPSLGFNG-QRCQ--MCLRSDPLHKVMERLANPGVRRLVIVEAGSK 363
                +AL+          F G + C    CLR+     V  R     V RLV+V+   K
Sbjct: 61  VG---EALERRSQ-----DFEGVRTCSPDDCLRTIFDLIVKAR-----VHRLVVVDEN-K 106

Query: 364 RVEGIISLSDVFRF 377
           RVEGIISLSD+ +F
Sbjct: 107 RVEGIISLSDILQF 120

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 120

>gnl|CDD|239990 cd04618, CBS_pair_5, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 83.1 bits (206), Expect = 1e-19
 Identities = 44/147 (29%), Positives = 59/147 (40%), Gaps = 50/147 (34%)

Query: 63  GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNL 122
            K+   D  L VK+AF+ L E G+   PLWD  K +FVG+L+  DFILILR         
Sbjct: 1   SKLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR--------- 51

Query: 123 TEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVAT 182
                                               LV   P  SL + AL +L+NK+  
Sbjct: 52  ------------------------------------LVSIHPERSLFDAALLLLKNKIHR 75

Query: 183 VPIIHSTGPAGSCQEILYLASLSDILK 209
           +P+I       S    LY+ +   ILK
Sbjct: 76  LPVIDP-----STGTGLYILTSRRILK 97

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 98

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 58.6 bits (142), Expect = 6e-11
 Identities = 30/132 (22%), Positives = 59/132 (44%), Gaps = 20/132 (15%)

Query: 247 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDKAYAQIHL 305
           R    + P  ++  AL L+++  +S +P+VDD+  L+ I +  D+  ALA+      + +
Sbjct: 1   RDVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLDPLVTV 60

Query: 306 DEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRV 365
            ++     + +  D                    L +  E +   G+RRL +V+    R+
Sbjct: 61  GDVMTRDVVTVSPD------------------TSLEEAAELMLEHGIRRLPVVD-DEGRL 101

Query: 366 EGIISLSDVFRF 377
            GI++ SD+ R 
Sbjct: 102 VGIVTRSDILRA 113

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 49.0 bits (117), Expect = 2e-07
 Identities = 27/135 (20%), Positives = 56/135 (41%), Gaps = 25/135 (18%)

Query: 157 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 216
           R +V   P D++ E    +L++ ++ +P++   G       ++ + +  D+L+ +     
Sbjct: 1   RDVVTVSPDDTVAEALRLMLEHGISGLPVVDDDG------RLVGIVTERDLLRALAEGGL 54

Query: 217 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 276
                                   +G+   R    + P  SL  A  L+++  +  +P+V
Sbjct: 55  DPL-------------------VTVGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVV 95

Query: 277 DDNDSLLDIYSRSDI 291
           DD   L+ I +RSDI
Sbjct: 96  DDEGRLVGIVTRSDI 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|214522 smart00116, CBS, Domain in cystathionine beta-synthase and other proteins

 Score = 46.0 bits (110), Expect = 3e-07
 Identities = 14/44 (31%), Positives = 23/44 (52%)

Query: 248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI 291
               + P  +L  AL LL +  +  +P+VD+   L+ I +R DI
Sbjct: 1   DVVTVSPDTTLEEALELLRENGIRRLPVVDEEGRLVGIVTRRDI 44

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. Length = 49

>gnl|CDD|239995 cd04623, CBS_pair_10, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 44.0 bits (105), Expect = 8e-06
 Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 20/126 (15%)

Query: 253 RPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDKAYAQIHLDEMNIH 311
           RP A++  A  L+ + ++ ++ +VDD   L+ I+S  DI   +A   A A     +  + 
Sbjct: 7   RPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGASA----LDTPVS 62

Query: 312 QALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISL 371
           + +      N                D + + M  +     R L +V+ G  ++ GI+S+
Sbjct: 63  EIMT----RNV---------ITVTPDDTVDEAMALMTERRFRHLPVVDGG--KLVGIVSI 107

Query: 372 SDVFRF 377
            DV + 
Sbjct: 108 GDVVKA 113

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 20/124 (16%)

Query: 254 PTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQA 313
              ++   LAL+        P+VDD   L+ I + +DI  +  +   A + L    + + 
Sbjct: 8   VDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVPAEGREATV-LVGDVMTRD 65

Query: 314 LQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSD 373
                 A+P               + L   ++R+A   + RL +V+  S R+ GI+S SD
Sbjct: 66  PVT---ASPD--------------ETLRDALKRMAERDIGRLPVVD-DSGRLVGIVSRSD 107

Query: 374 VFRF 377
           + R 
Sbjct: 108 LLRA 111

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 30/130 (23%), Positives = 56/130 (43%), Gaps = 20/130 (15%)

Query: 247 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLD 306
           +    ++P  S+  AL L+ +  VS++P+VDD   L+ I +  DI           + + 
Sbjct: 7   KDVITVKPDTSVRDALLLMSENGVSAVPVVDD-GKLVGIITERDILRALAAGGKRLLPVK 65

Query: 307 EMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLA-NPGVRRLVIVEAGSKRV 365
           E+     + +  D                   PL + +E +     +RRL +V+    ++
Sbjct: 66  EVMTKPVVTVDPD------------------TPLEEALELMVERHKIRRLPVVDDDGGKL 107

Query: 366 EGIISLSDVF 375
            GII+LSD+ 
Sbjct: 108 VGIITLSDIL 117

Length = 117

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 41.8 bits (99), Expect = 2e-05
 Identities = 13/45 (28%), Positives = 24/45 (53%)

Query: 247 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI 291
                + P  SL  AL L+ +  +S +P+VD++  L+ I +  D+
Sbjct: 7   PDVVTVPPDTSLEEALELMRENGISRLPVVDEDGKLVGIVTLRDL 51

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|239961 cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 33/133 (24%), Positives = 56/133 (42%), Gaps = 27/133 (20%)

Query: 247 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDKAYAQIHL 305
           +P   L P A+L  A  L     +   P+VDD   L+ I + SDI  A+A+    A++  
Sbjct: 1   KPLITLNPNATLREAARLFNTHHIHGAPVVDDGK-LVGIVTLSDIAHAIARGLELAKVK- 58

Query: 306 DEM--NIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSK 363
           D M  ++        D +  L             D +  + +      V RL++ +   +
Sbjct: 59  DVMTKDVITI-----DEDEQL------------YDAIRLMNKH----NVGRLIVTDDEGR 97

Query: 364 RVEGIISLSDVFR 376
            V GII+ +D+ R
Sbjct: 98  PV-GIITRTDILR 109

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239966 cd04593, CBS_pair_EriC_assoc_bac_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 30/125 (24%), Positives = 58/125 (46%), Gaps = 20/125 (16%)

Query: 252 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDKAYAQIHLDEMNI 310
           L  T  L  A   L+++   S  +VD +  ++ I +  D+  AL  D+A     +DE+  
Sbjct: 6   LSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADEAGEPSAVDEVAT 65

Query: 311 HQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSK-RVEGII 369
              L +  D                  +PL   ++R+A+ G+R+L +V+ G+  +V G++
Sbjct: 66  PPLLTVHPD------------------EPLAHALDRMASRGLRQLPVVDRGNPGQVLGLL 107

Query: 370 SLSDV 374
           +  +V
Sbjct: 108 TRENV 112

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in CLC chloride channel family members have been associated with classic Bartter syndrome, Osteopetrosis, Dent's disease, idiopathic generalized epilepsy, and myotonia. Length = 115

>gnl|CDD|239994 cd04622, CBS_pair_9, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 42.1 bits (100), Expect = 5e-05
 Identities = 26/127 (20%), Positives = 52/127 (40%), Gaps = 22/127 (17%)

Query: 250 AMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT--ALAKDKAYAQIHLDE 307
             + P  ++  A  L+ + DV ++P+ + ND L+ I +  DI   A+A+ +      + +
Sbjct: 4   VTVSPDDTIREAARLMREHDVGALPVCE-NDRLVGIVTDRDIVVRAVAEGRDPDTTTVGD 62

Query: 308 MNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEG 367
           +     +                       D + +    +    VRRL +V+    R+ G
Sbjct: 63  VMTRGVV------------------TVTEDDDVDEAARLMREHQVRRLPVVD-DDGRLVG 103

Query: 368 IISLSDV 374
           I+SL D+
Sbjct: 104 IVSLGDL 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|240115 cd04802, CBS_pair_3, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 41.2 bits (97), Expect = 9e-05
 Identities = 32/136 (23%), Positives = 57/136 (41%), Gaps = 26/136 (19%)

Query: 157 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 216
           + ++   P  ++ E A  + +N +  + ++ +  P G   E        D++K      K
Sbjct: 1   KNVITVDPDTTVYEAANIMTENNIGRLIVVDNEKPVGIITE-------RDLVK------K 47

Query: 217 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 276
             S +L   + PV            GE    P   + P ASL  A  L+ +  +  +P+V
Sbjct: 48  VVSRNLKPREVPV------------GEVMSTPLITIDPNASLNEAAKLMAKHGIKRLPVV 95

Query: 277 DDNDSLLDIYSRSDIT 292
           DD D L+ I + +DI 
Sbjct: 96  DD-DELVGIVTTTDIV 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|240113 cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score = 40.2 bits (95), Expect = 2e-04
 Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 24/133 (18%)

Query: 247 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT--ALAKDKAYAQIH 304
           RP     P  ++  A  L+ +  VSS+ +V D+  L+ I +  D+    +A+        
Sbjct: 1   RPPVTCSPDTTIREAARLMTEHRVSSL-LVVDDGRLVGIVTDRDLRNRVVAEGLDPDTP- 58

Query: 305 LDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKR 364
           + E+     + +  DA                 + L  ++ER    G+  L +V+ G  R
Sbjct: 59  VSEVMTAPPITIPPDA--------------TVFEALLLMLER----GIHHLPVVDDG--R 98

Query: 365 VEGIISLSDVFRF 377
           + G+IS +D+ R 
Sbjct: 99  LVGVISATDLLRL 111

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239999 cd04627, CBS_pair_14, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 13/44 (29%), Positives = 22/44 (50%)

Query: 336 RSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 379
            +  L + +E L + G+ R+ + E  S  V GI+S   +  FL 
Sbjct: 8   STASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLW 51

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 123

>gnl|CDD|240013 cd04642, CBS_pair_29, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.8 bits (91), Expect = 7e-04
 Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 7/118 (5%)

Query: 261 ALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDA 320
           A  L+ + ++S +P+VD+   L+   S SD+  L          L    I          
Sbjct: 15  AFKLMRKNNISGLPVVDEKGKLIGNISASDLKGL---LLSPDDLLLYRTITFKELSE--K 69

Query: 321 NPSLGFNGQRCQM-CLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 377
                    R  + C  S  L +V+ +L    V R+ +V+   K   G+I+L+D+   
Sbjct: 70  FTDSDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGK-PIGVITLTDIISI 126

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 126

>gnl|CDD|239974 cd04601, CBS_pair_IMPDH, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 38.2 bits (90), Expect = 8e-04
 Identities = 13/40 (32%), Positives = 25/40 (62%)

Query: 252 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI 291
           + P A++  AL L+ +  +S +P+VDD+  L+ I +  D+
Sbjct: 7   VSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDL 46

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 110

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.8 bits (88), Expect = 0.001
 Identities = 30/146 (20%), Positives = 59/146 (40%), Gaps = 35/146 (23%)

Query: 64  KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLT 123
            V  +  +  V +A  ++ E G+  +P+ DD  GR VG+++  D +  L E G +     
Sbjct: 2   DVVTVSPDDTVAEALRLMLEHGISGLPVVDD-DGRLVGIVTERDLLRALAEGGLDPLVTV 60

Query: 124 EEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATV 183
            + +                             R +V   P  SL+E A  +L++ +  +
Sbjct: 61  GDVMT----------------------------RDVVTVSPDTSLEEAAELMLEHGIRRL 92

Query: 184 PIIHSTGPAGSCQEILYLASLSDILK 209
           P++   G       ++ + + SDIL+
Sbjct: 93  PVVDDEG------RLVGIVTRSDILR 112

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.0 bits (89), Expect = 0.001
 Identities = 29/136 (21%), Positives = 57/136 (41%), Gaps = 21/136 (15%)

Query: 160 VQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRH--FKH 217
           V   P   + E A  +++N    +P++          +++ + + +DILK +     F  
Sbjct: 4   VTVPPTTPIMEAAKIMVRNGFRRLPVVDE-----GTGKLVGIITATDILKYLGGGEKFNK 58

Query: 218 SSS--SLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPI 275
             +   L  + +PV SI              R    + P  S+  A  L+++  V  +P+
Sbjct: 59  IKTGNGLEAINEPVRSIMT------------RNVITITPDDSIKDAAELMLEKRVGGLPV 106

Query: 276 VDDNDSLLDIYSRSDI 291
           VDD+  L+ I +  D+
Sbjct: 107 VDDDGKLVGIVTERDL 122

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 35.6 bits (83), Expect = 0.002
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 337 SDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 380
              L + +E +   G+ RL +V     ++ GI++L D+ R LL 
Sbjct: 15  DTSLEEALELMRENGISRLPVV-DEDGKLVGIVTLRDLLRALLE 57

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|239993 cd04621, CBS_pair_8, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 12/45 (26%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 247 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI 291
                + P   +  A  L+++A++S +P+V DND+++ + +++DI
Sbjct: 89  EEIITVSPNDDVVDAAKLMLEANISGLPVV-DNDNIVGVITKTDI 132

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 135

>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 36.8 bits (86), Expect = 0.003
 Identities = 17/53 (32%), Positives = 28/53 (52%)

Query: 239 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI 291
             +G+   R      P  +L  AL  + + D+  +P+VDD+  L+ I SRSD+
Sbjct: 56  VLVGDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDL 108

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239984 cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

 Score = 36.8 bits (86), Expect = 0.003
 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 24/132 (18%)

Query: 247 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLD 306
                  P  SL  A + + +  +SSI +V D+   L I +  DI  L            
Sbjct: 1   TQILTCPPDTSLAEAASRMRERRISSI-VVVDDGRPLGIVTERDILRL------------ 47

Query: 307 EMNIHQALQLGQDANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIV-EAGSKR 364
                  L  G D    +G               L+   + +   G+R LV+V + G   
Sbjct: 48  -------LASGPDLQTPVGEVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDG--E 98

Query: 365 VEGIISLSDVFR 376
           + G++S +D+ +
Sbjct: 99  LLGLLSQTDLLQ 110

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239968 cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

 Score = 36.8 bits (86), Expect = 0.003
 Identities = 31/131 (23%), Positives = 57/131 (43%), Gaps = 22/131 (16%)

Query: 247 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLD 306
            P   +RP A++  A  LL++   +++P+V+    ++ I SR D+     +KA   +   
Sbjct: 2   SPVKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDV-----EKA---LRHG 52

Query: 307 EMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVE 366
                    LG    P   +            PL +V E +    + R+ +VE G  R+ 
Sbjct: 53  ---------LGHA--PVKDYMSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVEDG--RLV 99

Query: 367 GIISLSDVFRF 377
           GI++ +D+ R 
Sbjct: 100 GIVTRTDLLRT 110

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|240009 cd04638, CBS_pair_25, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 36.6 bits (85), Expect = 0.003
 Identities = 24/120 (20%), Positives = 52/120 (43%), Gaps = 31/120 (25%)

Query: 260 SALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD 319
             L LL +  VS +P+V  +  L+ I +R D+            + +E  +  AL + +D
Sbjct: 14  DVLELLKEYKVSGVPVVKKSGELVGIITRKDLL----------RNPEEEQL--ALLMTRD 61

Query: 320 ---ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 376
               +P               D + +  + +    +RR+ +V+    ++ GI++++D+ R
Sbjct: 62  PPTVSPD--------------DDVKEAAKLMVENNIRRVPVVD--DGKLVGIVTVADIVR 105

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 106

>gnl|CDD|240006 cd04635, CBS_pair_22, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.1 bits (86), Expect = 0.003
 Identities = 13/44 (29%), Positives = 27/44 (61%)

Query: 248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI 291
           P   + P  S+ +A+ L+++ D+  +P+V++ D L+ I  R D+
Sbjct: 76  PVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDV 119

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	381
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	100.0
COG2524	294	Predicted transcriptional regulator, contains C-te	99.79
COG2524	294	Predicted transcriptional regulator, contains C-te	99.7
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.69
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.66
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.65
COG3620	187	Predicted transcriptional regulator with C-termina	99.65
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.62
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.61
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.61
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.58
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.58
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.58
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.57
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.57
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.57
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.57
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.56
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.55
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.54
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.54
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.54
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.53
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.53
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.53
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.53
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.53
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.53
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.53
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.53
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.52
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.52
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.52
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.52
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.52
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.51
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.51
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.51
PRK14869	546	putative manganese-dependent inorganic pyrophospha	99.51
COG2905	610	Predicted signal-transduction protein containing c	99.51
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.5
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.5
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.5
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.5
PRK14869	546	putative manganese-dependent inorganic pyrophospha	99.49
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.49
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.49
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.49
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.49
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.49
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.49
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.49
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.49
COG3620	187	Predicted transcriptional regulator with C-termina	99.48
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.48
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.48
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.48
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.48
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.48
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.48
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.47
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.47
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.47
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.47
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.47
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	99.47
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.47
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.46
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.46
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.46
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	99.45
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.44
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	99.44
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.44
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.43
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.43
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.43
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.43
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	99.43
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.42
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.42
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.42
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.42
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.42
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	99.41
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	99.41
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.41
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.41
COG4109	432	Predicted transcriptional regulator containing CBS	99.41
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	99.4
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.4
COG0517	117	FOG: CBS domain [General function prediction only]	99.39
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.39
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.39
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.39
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.38
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.38
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.38
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	99.38
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.38
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.37
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.37
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	99.37
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.37
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.37
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.36
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.36
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.36
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.36
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.36
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.35
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.35
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.35
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.35
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	99.34
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.34
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	99.34
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.34
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.34
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.34
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.33
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.33
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.33
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	99.33
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.33
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.33
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.32
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.32
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.32
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.32
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.32
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.31
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.31
COG0517	117	FOG: CBS domain [General function prediction only]	99.31
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.3
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.3
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	99.3
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.29
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.29
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.29
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.29
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.28
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.28
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.28
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	99.27
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.27
COG2905	610	Predicted signal-transduction protein containing c	99.27
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	99.27
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.26
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.26
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.26
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.25
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.25
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.25
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	99.25
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	99.25
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.25
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.24
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.24
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	99.24
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	99.23
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.22
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.22
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.19
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	99.19
PRK11573	413	hypothetical protein; Provisional	99.19
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	99.19
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.17
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	99.16
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	99.15
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	99.13
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	99.08
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	99.06
COG4109	432	Predicted transcriptional regulator containing CBS	99.06
COG1253	429	TlyC Hemolysins and related proteins containing CB	99.06
PRK11573	413	hypothetical protein; Provisional	99.04
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	99.03
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	99.01
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	98.99
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	98.98
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	98.97
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.81
COG1253	429	TlyC Hemolysins and related proteins containing CB	98.76
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.66
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	98.65
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	98.61
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	98.59
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	98.55
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	98.49
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	98.46
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.45
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.28
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	98.07
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	98.06
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	97.96
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	97.95
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	97.86
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	97.81
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	97.63
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	97.32
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	96.89
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	96.81
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	96.14
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	95.39
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	94.4
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	93.88
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	91.6
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	86.43

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=100.00  E-value=6.5e-37  Score=293.10  Aligned_cols=303  Identities=30%  Similarity=0.543  Sum_probs=259.9

Q ss_pred             HHHHHHHHhhhCcccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeecccCCCCcEEEEeehHHHHHHHHHhccCCCC
Q 016866           42 SRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSN  121 (381)
Q Consensus        42 ~~~~~~~~l~~~~~~d~~p~s~~vi~ld~~~~v~~A~~~l~~~~i~~~pV~d~~~~~~vGilt~~D~~~il~~~~~~~~~  121 (381)
                      +...++.|+..++||+.+|.+++++.+|..+++.+||++|..++.+++|+||....+++|+++..||+.++..++..+..
T Consensus        55 ~~~~~~~~~~~~~~~~~~p~~~~l~~~d~~~~v~~a~~~l~~~~~~~~p~~~~~~~~~~g~~~~~d~i~~~~~~~~~~~~  134 (381)
T KOG1764|consen   55 AVDTLSKFMKSHTCYDLLPTSSKLVVFDTKLSVKKAFNALVQNGVRAAPLWDSKKQQFVGMLTITDFITVLLRYYKSKSS  134 (381)
T ss_pred             hhHHHHHHHhccCcccccCCcceeEEeeCCCcHHHHHHHHHhhceeeeccccCccceeEEEEEHHHHHHHHHHhhccCCc
Confidence            66899999999999999999999999999999999999999999999999999999999999999999998877764221


Q ss_pred             C-ChhHHhhccHHHHHHHHHhhhccccCCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEE
Q 016866          122 L-TEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILY  200 (381)
Q Consensus       122 ~-~~~~l~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~g  200 (381)
                      . ..+.++...+..|++.....+         ....++++.+.|..++.++...+.+++++++||.|  .+.+   .+.+
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d--~~~~---~v~~  200 (381)
T KOG1764|consen  135 LDNIEVLEDSQLSKRREVECLLK---------ETLKPPFVSISPESSLLDAVLLLIKSRIHRVPVID--PETG---EVLY  200 (381)
T ss_pred             HHHHhhhhhhhccccchhhhhhc---------cccCCCceeecCcHHHHHHHHHHHhCCccceeeec--cccc---ceee
Confidence            1 223444444555554422221         12344559999999999999999999999999996  4567   8999


Q ss_pred             EeehhhHHHHHhhhcccCCCCCccccCccccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCC
Q 016866          201 LASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDND  280 (381)
Q Consensus       201 ils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g  280 (381)
                      ++|++.|++++..+.+..+ ...++..++.++.+|+|.         .+..+..++++.+|+++|.+.+++++||||+.|
T Consensus       201 ilt~~rIl~~l~~~~~~~~-~~~~l~~s~~dl~ig~~~---------~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g  270 (381)
T KOG1764|consen  201 ILTQRRILKFLWLNGRLLP-LPSLLSKSLSDLGIGTWS---------NIASISEDTPVIEALKIMSERRISALPVVDENG  270 (381)
T ss_pred             ehhHHHHHHHHHHhhcccc-cHHHhhCCHHHhCcchhh---------hheeecCCCcHHHHHHHHHhcCcCcceEEcCCC
Confidence            9999999999999887766 567889999999999997         688999999999999999999999999999999


Q ss_pred             cEEEEEeHHHHHHHHhhhhhccccccccc-HHHHHhcCCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEe
Q 016866          281 SLLDIYSRSDITALAKDKAYAQIHLDEMN-IHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVE  359 (381)
Q Consensus       281 ~lvGiis~~Di~~l~~~~~~~~~~~~~~~-v~~~l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd  359 (381)
                      ..+|+++..|+..+...+.|....   .+ +.+++..+.       .-..++++|++++||.+++++|..+++||+||||
T Consensus       271 ~~v~~~s~~Dv~~l~~~~~~~~~~---~~~l~~~~~~~~-------~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd  340 (381)
T KOG1764|consen  271 KKVGNYSRFDVIHLAREGTYNNLD---LSCLSEALSHRP-------IRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVD  340 (381)
T ss_pred             ceecceehhhhhhhhhcCccCccc---hhHHHHHhhhcc-------cccCccEEEeecchHHHHHHHHHhcCceEEEEEc
Confidence            999999999999999888776654   45 777776543       2234589999999999999999999999999999


Q ss_pred             CCCCeEEEEEehHHHHHHhh
Q 016866          360 AGSKRVEGIISLSDVFRFLL  379 (381)
Q Consensus       360 ~~~~~liGiIs~~DIl~~l~  379 (381)
                      + +|+++|+||++||+.++.
T Consensus       341 ~-~~~l~GvvSLsDil~~l~  359 (381)
T KOG1764|consen  341 E-DGVLVGVISLSDILSYLV  359 (381)
T ss_pred             C-CCcEEEEeeHHHHHHHHH
Confidence            4 799999999999999985

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.79  E-value=1e-18  Score=152.74  Aligned_cols=122  Identities=18%  Similarity=0.383  Sum_probs=111.9

Q ss_pred             cccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCC
Q 016866          239 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQ  318 (381)
Q Consensus       239 ~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~  318 (381)
                      .+++++|.++++++.+++|+.+|.++|.++++++.||+|+ ++++|++|.+|+..+++++.+      +..|++      
T Consensus       172 ~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~-dk~vGiit~~dI~~aia~g~~------~~kV~~------  238 (294)
T COG2524         172 EKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD-DKIVGIITLSDIAKAIANGNL------DAKVSD------  238 (294)
T ss_pred             chhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecC-CceEEEEEHHHHHHHHHcCCc------cccHHH------
Confidence            3567899999999999999999999999999999999995 599999999999998887654      367777      


Q ss_pred             CCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhcC
Q 016866          319 DANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV  381 (381)
Q Consensus       319 ~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~~  381 (381)
                             +|.++++++..++.+.+|++.|..+++.||.|+|. +|+++|+||++||++.++++
T Consensus       239 -------~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds-~gkpvGiITrTDIL~~ia~~  293 (294)
T COG2524         239 -------YMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDS-NGKPVGIITRTDILTRIAGL  293 (294)
T ss_pred             -------HhccCCceEcCchhHHHHHHHHHhcCcceEEEEcc-CCcEEEEEehHHHHHHhhcc
Confidence                   78889999999999999999999999999999994 79999999999999999864

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.70  E-value=1.5e-16  Score=139.27  Aligned_cols=118  Identities=19%  Similarity=0.329  Sum_probs=106.2

Q ss_pred             CCCCCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccc
Q 016866          151 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVS  230 (381)
Q Consensus       151 ~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~  230 (381)
                      ++..|+++++++.+++|+.+|++++.+++++..||+|+    +   +++|++|.+||...+...                
T Consensus       174 V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~----d---k~vGiit~~dI~~aia~g----------------  230 (294)
T COG2524         174 VKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD----D---KIVGIITLSDIAKAIANG----------------  230 (294)
T ss_pred             hhhhccCCceEecCCccHHHHHHHHHHcCccCCceecC----C---ceEEEEEHHHHHHHHHcC----------------
Confidence            45589999999999999999999999999999999975    4   799999999999977642                


Q ss_pred             cccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHh
Q 016866          231 SIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  296 (381)
Q Consensus       231 ~l~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~  296 (381)
                           ....+|+++|+++++++..++.+.||+++|..+++.++.|+|.+|+++|++|+.|++..++
T Consensus       231 -----~~~~kV~~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia  291 (294)
T COG2524         231 -----NLDAKVSDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIA  291 (294)
T ss_pred             -----CccccHHHHhccCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhh
Confidence                 2334677789999999999999999999999999999999999999999999999998554

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.69  E-value=1e-15  Score=123.98  Aligned_cols=119  Identities=39%  Similarity=0.661  Sum_probs=96.5

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866          248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  327 (381)
Q Consensus       248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m  327 (381)
                      ++.++.+++++.+|++.|.+++.+++||+|++|+++|+++.+|+..+...+.....   ..++.+.+....       .|
T Consensus         2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~~~~~~~---~~~~~~~~~~~~-------~~   71 (120)
T cd04641           2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAYNNL---DLTVGEALERRS-------QD   71 (120)
T ss_pred             CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhcCccccc---cCCHHHHHhhcc-------cC
Confidence            57789999999999999999999999999989999999999999986543322111   123443222111       45


Q ss_pred             CCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866          328 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  377 (381)
Q Consensus       328 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~  377 (381)
                      ..++.++.+++++.++++.|.+++.+++||+|+ +|+++|+||.+|++++
T Consensus        72 ~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-~~~~~Givt~~di~~~  120 (120)
T cd04641          72 FEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDE-NKRVEGIISLSDILQF  120 (120)
T ss_pred             CCCCeEEcCCCcHHHHHHHHHhcCccEEEEECC-CCCEEEEEEHHHhhcC
Confidence            557889999999999999999999999999994 6899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.66  E-value=6.6e-16  Score=137.67  Aligned_cols=127  Identities=19%  Similarity=0.371  Sum_probs=108.6

Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCC
Q 016866          240 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  319 (381)
Q Consensus       240 ~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~  319 (381)
                      +..++|+++++++++++++.+|.++|.++++..+||+|++.+++|+++++|+.+-..-..+.++.           .-  
T Consensus       246 tcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~~~p~qrlr-----------~~--  312 (382)
T COG3448         246 TCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARPSPFQRLR-----------FL--  312 (382)
T ss_pred             cHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccCcchHHHhh-----------cc--
Confidence            45788999999999999999999999999999999999999999999999999854433332221           11  


Q ss_pred             CCCCcc-cCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866          320 ANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  380 (381)
Q Consensus       320 ~~~~~~-~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~  380 (381)
                      .....+ +|+.++.|+.++++..+.+-++.+.+.|.+||+|+ .|+++||||.+|++.+++.
T Consensus       313 ~~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~-~g~lvGIvsQtDliaal~r  373 (382)
T COG3448         313 RPPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDA-AGKLVGIVSQTDLIAALYR  373 (382)
T ss_pred             CCCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEcC-CCcEEEEeeHHHHHHHHHH
Confidence            111232 99999999999999999999999999999999994 7999999999999998753

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.65  E-value=2.4e-15  Score=134.05  Aligned_cols=173  Identities=17%  Similarity=0.258  Sum_probs=129.4

Q ss_pred             cEEEEeehHHHHHHHHHhccCCCCCChhHHhhccHHH-HHHHHHhhhccccCCCCCCCCCCCceEeCCCCCHHHHHHHHH
Q 016866           98 RFVGVLSALDFILILRELGTNGSNLTEEELETHTISA-WKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKIL  176 (381)
Q Consensus        98 ~~vGilt~~D~~~il~~~~~~~~~~~~~~l~~~~i~~-~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~~a~~~m~  176 (381)
                      +-+|+ +..|+-..++.++.-- ++..++++...-+. +....+..+.-.|    .++|+++++++.+++++.+|.++|.
T Consensus       199 ~rvgf-s~~Dld~aL~~~~E~l-DIdrddLe~llr~~elqa~~R~~~~Ltc----adIMSrdVvtv~~~ts~dhA~~ll~  272 (382)
T COG3448         199 QRVGF-SSEDLDAALQRLGETL-DIDRDDLERLLRETELQALRRRMGELTC----ADIMSRDVVTVSTDTSIDHARKLLQ  272 (382)
T ss_pred             hccCC-CHHHHHHHHHhcCcee-cCCHHHHHHHHHHHHHHHHHHHhccccH----HHhcCccceecCCcCChHHHHHHHH
Confidence            44565 7789999998876532 34566666542211 1111111111122    2389999999999999999999999


Q ss_pred             hCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccccccccccccccccccCCCceEecCCC
Q 016866          177 QNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTA  256 (381)
Q Consensus       177 ~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~~~~v~~~~~~~~~~v~~~~  256 (381)
                      ++++..+||+|+   ..   +++|+++++|+++....          ...+.++.+    -.++++.+|+.++.++.+++
T Consensus       273 ~H~ikaLPV~d~---~~---rl~GiVt~~dl~~~a~~----------~p~qrlr~~----~~~~vk~imt~~v~tv~pdt  332 (382)
T COG3448         273 EHRIKALPVLDE---HR---RLVGIVTQRDLLKHARP----------SPFQRLRFL----RPPTVKGIMTTPVVTVRPDT  332 (382)
T ss_pred             HcCccccccccc---cc---ceeeeeeHHHHhhccCc----------chHHHhhcc----CCCcccccccCcceeecCCC
Confidence            999999999976   44   79999999999883211          111222222    23577888999999999999


Q ss_pred             CHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHh
Q 016866          257 SLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  296 (381)
Q Consensus       257 ~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~  296 (381)
                      +..+.+-.+.+.+.+++||+|++|+++|++|+.|++..+.
T Consensus       333 pa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~  372 (382)
T COG3448         333 PAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALY  372 (382)
T ss_pred             cHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHH
Confidence            9999999999999999999999999999999999998554

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.65  E-value=1.2e-15  Score=124.09  Aligned_cols=120  Identities=18%  Similarity=0.385  Sum_probs=102.2

Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCC
Q 016866          240 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  319 (381)
Q Consensus       240 ~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~  319 (381)
                      ++..+|..+++++.+++++.++.++|.++++|.+||+++ |+++|-||..++.++.-++.   ..+.+..+.+       
T Consensus        66 ta~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le~~---e~i~~~~vr~-------  134 (187)
T COG3620          66 TAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLEGM---ESIRSLRVRE-------  134 (187)
T ss_pred             eHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHhccc---cchhhhhHHH-------
Confidence            344569999999999999999999999999999999985 99999999999999765432   1222456666       


Q ss_pred             CCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866          320 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  380 (381)
Q Consensus       320 ~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~  380 (381)
                            +|+.++++++++.++..+-+++..++.  +.|++  +|+++||||+.||++.+.+
T Consensus       135 ------vM~e~fP~Vs~~~~l~vI~~LL~~~~A--VlV~e--~G~~vGIITk~DI~k~~~~  185 (187)
T COG3620         135 ------VMGEPFPTVSPDESLNVISQLLEEHPA--VLVVE--NGKVVGIITKADIMKLLAG  185 (187)
T ss_pred             ------HhcCCCCcCCCCCCHHHHHHHHhhCCe--EEEEe--CCceEEEEeHHHHHHHHhc
Confidence                  889999999999999999988887764  77886  5999999999999999865

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.62  E-value=9.3e-15  Score=116.72  Aligned_cols=110  Identities=12%  Similarity=0.271  Sum_probs=92.9

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866          248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  327 (381)
Q Consensus       248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m  327 (381)
                      ++.++.+++++.+|++.|.+.+.+.+||+|++|+++|+++..|+.+...+ ..     .+.++.+             +|
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~-~~-----~~~~v~~-------------~~   62 (111)
T cd04603           2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEIGPN-DY-----ETLKVCE-------------VY   62 (111)
T ss_pred             ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhhccc-cc-----cccChhh-------------ee
Confidence            35688999999999999999999999999989999999999999874221 11     1234554             56


Q ss_pred             CCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866          328 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  377 (381)
Q Consensus       328 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~  377 (381)
                      ..++.++.+++++.+|++.|.+++.+++||+|+ +|+++|+||.+|++++
T Consensus        63 ~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~-~~~~~Giit~~di~~~  111 (111)
T cd04603          63 IVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDK-EGKLVGTIYERELLRF  111 (111)
T ss_pred             ecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcC-CCeEEEEEEhHHhhcC
Confidence            667889999999999999999999999999994 6899999999999863

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.61  E-value=1.7e-14  Score=115.76  Aligned_cols=111  Identities=16%  Similarity=0.293  Sum_probs=94.0

Q ss_pred             ceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccCC
Q 016866          249 FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNG  328 (381)
Q Consensus       249 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m~  328 (381)
                      +.++.+++++.++++.|.+.+...+||+|++|+++|+++.+|+.+........   ..+.++.+             +|.
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~~~~---~~~~~v~~-------------~~~   66 (114)
T cd04619           3 LAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRCGGP---GCTAPVEN-------------VMT   66 (114)
T ss_pred             eEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhcCCC---cccCCHHH-------------Hhc
Confidence            56889999999999999999999999999999999999999998754321101   11345666             555


Q ss_pred             CcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 016866          329 QRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  376 (381)
Q Consensus       329 ~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~  376 (381)
                      .++.++.+++++.++++.|.+++.+++||+|+ +|+++|+||.+|+++
T Consensus        67 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~~~Gvi~~~dl~~  113 (114)
T cd04619          67 RAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDE-NARPLGVLNARDALK  113 (114)
T ss_pred             CCCeeECCCCCHHHHHHHHHHcCCCeEEEECC-CCcEEEEEEhHhhcc
Confidence            67889999999999999999999999999994 689999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.61  E-value=9e-15  Score=114.34  Aligned_cols=95  Identities=15%  Similarity=0.262  Sum_probs=85.3

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCcEEEEEcCC-CcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCccc
Q 016866          248 PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF  326 (381)
Q Consensus       248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~  326 (381)
                      .++++++++++.+|++.|.+++++++||+|++ |+++|++|..|+.+...                              
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~------------------------------   51 (98)
T cd04618           2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR------------------------------   51 (98)
T ss_pred             eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee------------------------------
Confidence            46789999999999999999999999999974 89999999999976211                              


Q ss_pred             CCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCC-CeEEEEEehHHHHHH
Q 016866          327 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGS-KRVEGIISLSDVFRF  377 (381)
Q Consensus       327 m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~-~~liGiIs~~DIl~~  377 (381)
                          +.++.+++++.+|++.|.+++++++||+|+ + |+++|+||.+|++++
T Consensus        52 ----~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~~~~giit~~d~~~~   98 (98)
T cd04618          52 ----LVSIHPERSLFDAALLLLKNKIHRLPVIDP-STGTGLYILTSRRILKF   98 (98)
T ss_pred             ----eEEeCCCCcHHHHHHHHHHCCCCEeeEEEC-CCCCceEEeehhhhhcC
Confidence                458999999999999999999999999994 5 899999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.58  E-value=5.5e-14  Score=112.62  Aligned_cols=112  Identities=21%  Similarity=0.257  Sum_probs=94.1

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCcEEEEEcCC-CcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCccc
Q 016866          248 PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF  326 (381)
Q Consensus       248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~  326 (381)
                      ++.++.+++++.++++.|.+++.+.+||+|++ |+++|+++.+|+++.+......   ..+.++.+             +
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~---~~~~~v~~-------------~   65 (114)
T cd04630           2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRD---PDRVNVYE-------------I   65 (114)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCC---CCccCHHH-------------H
Confidence            56789999999999999999999999999987 8999999999998854322111   11245665             5


Q ss_pred             CCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866          327 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  377 (381)
Q Consensus       327 m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~  377 (381)
                      |..++.++++++++.++++.|.+.+.+.+||+| + |+++|+||..|++++
T Consensus        66 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~-~~~~Gvi~~~dl~~~  114 (114)
T cd04630          66 MTKPLISVSPDMDIKYCARLMERTNIRRAPVVE-N-NELIGIISLTDIFLA  114 (114)
T ss_pred             hcCCCeeECCCCCHHHHHHHHHHcCCCEeeEee-C-CEEEEEEEHHHhhcC
Confidence            556789999999999999999999999999999 4 899999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.58  E-value=3.1e-14  Score=135.81  Aligned_cols=120  Identities=15%  Similarity=0.221  Sum_probs=103.8

Q ss_pred             cccccccCC--CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhc
Q 016866          239 PRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  316 (381)
Q Consensus       239 ~~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~  316 (381)
                      .+++++|.+  ++.++.+++++.+|++.|.+++.+.+||+|++|+++|++|.+|+.+....+.    .+.+.++.+    
T Consensus       202 ~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~~~~----~~~~~~v~~----  273 (326)
T PRK10892        202 LRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFDMGI----DLRQASIAD----  273 (326)
T ss_pred             CcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHhcCC----CcccCCHHH----
Confidence            467888987  8999999999999999999999988899998999999999999987544221    122356666    


Q ss_pred             CCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866          317 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  377 (381)
Q Consensus       317 ~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~  377 (381)
                               +|..++.++.+++++.+|++.|.+++++++||+|  +++++|+||.+||+++
T Consensus       274 ---------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~--~~~lvGiit~~dil~~  323 (326)
T PRK10892        274 ---------VMTPGGIRVRPGILAVDALNLMQSRHITSVLVAD--GDHLLGVLHMHDLLRA  323 (326)
T ss_pred             ---------hcCCCCEEECCCCCHHHHHHHHHHCCCcEEEEee--CCEEEEEEEhHHhHhc
Confidence                     7777899999999999999999999999999998  3799999999999975

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.58  E-value=6.2e-14  Score=113.14  Aligned_cols=112  Identities=21%  Similarity=0.311  Sum_probs=93.2

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866          248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  327 (381)
Q Consensus       248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m  327 (381)
                      ++.++.+++++.++++.|..++.+++||+|++|+++|+++..|+.+....+.    .+.+.++.+             +|
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~~----~~~~~~~~~-------------~~   64 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGGA----DLQKVPVGV-------------IM   64 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcCC----CccCCCHHH-------------Hh
Confidence            5678999999999999999999999999998899999999999988654221    111345555             44


Q ss_pred             CC--cceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCC--CeEEEEEehHHHHH
Q 016866          328 GQ--RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGS--KRVEGIISLSDVFR  376 (381)
Q Consensus       328 ~~--~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~--~~liGiIs~~DIl~  376 (381)
                      ..  ++.++++++++.++++.|.+++++++||+|+++  |+++|+||.+|+++
T Consensus        65 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~  117 (118)
T cd04617          65 TRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK  117 (118)
T ss_pred             CCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence            32  578999999999999999999999999999532  69999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.57  E-value=2.4e-14  Score=111.89  Aligned_cols=97  Identities=44%  Similarity=0.732  Sum_probs=85.6

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHcCCCeeecccCCCCcEEEEeehHHHHHHHHHhccCCCCCChhHHhhccHHHHHHHHHhh
Q 016866           63 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL  142 (381)
Q Consensus        63 ~~vi~ld~~~~v~~A~~~l~~~~i~~~pV~d~~~~~~vGilt~~D~~~il~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~  142 (381)
                      +++++++++.|+.+|++.|.++++.++||+|+++++++|++|..|+.+.+                              
T Consensus         1 ~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~------------------------------   50 (98)
T cd04618           1 SKLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILIL------------------------------   50 (98)
T ss_pred             CeEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhe------------------------------
Confidence            36899999999999999999999999999997657799999999986421                              


Q ss_pred             hccccCCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHH
Q 016866          143 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  209 (381)
Q Consensus       143 ~~~~~~~~~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~  209 (381)
                                   .  ++++.+++++.+|+++|.+++++++||++++  +|   +++|++|.+|+++
T Consensus        51 -------------~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--~~---~~~giit~~d~~~   97 (98)
T cd04618          51 -------------R--LVSIHPERSLFDAALLLLKNKIHRLPVIDPS--TG---TGLYILTSRRILK   97 (98)
T ss_pred             -------------e--eEEeCCCCcHHHHHHHHHHCCCCEeeEEECC--CC---CceEEeehhhhhc
Confidence                         1  5689999999999999999999999999762  36   8999999999976

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.57  E-value=8.9e-14  Score=111.51  Aligned_cols=112  Identities=20%  Similarity=0.346  Sum_probs=94.1

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866          248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  327 (381)
Q Consensus       248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m  327 (381)
                      ++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+.+...+....    ...++.+             +|
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~~~----~~~~~~~-------------~~   64 (115)
T cd04593           2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADEAG----EPSAVDE-------------VA   64 (115)
T ss_pred             CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHhccccc----ccccHHH-------------hc
Confidence            466889999999999999999999999999899999999999999865432110    0233444             55


Q ss_pred             CCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCC--CeEEEEEehHHHHHH
Q 016866          328 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGS--KRVEGIISLSDVFRF  377 (381)
Q Consensus       328 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~--~~liGiIs~~DIl~~  377 (381)
                      ..++.++.+++++.++++.|.+++.+++||+|+ +  |+++|+||.+||+++
T Consensus        65 ~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~-~~~~~~~Gvit~~di~~~  115 (115)
T cd04593          65 TPPLLTVHPDEPLAHALDRMASRGLRQLPVVDR-GNPGQVLGLLTRENVLLA  115 (115)
T ss_pred             cCCceEECCCCCHHHHHHHHHHcCCceeeEEeC-CCCCeEEEEEEhHHhhcC
Confidence            567899999999999999999999999999994 5  799999999999864

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.57  E-value=2.1e-14  Score=117.21  Aligned_cols=113  Identities=14%  Similarity=0.232  Sum_probs=94.4

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866          248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  327 (381)
Q Consensus       248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m  327 (381)
                      ++.++.+++++.++++.|.+++++++||+|++|+++|+++..|+++....+....    +.++.+             +|
T Consensus         3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~~~~----~~~v~~-------------im   65 (124)
T cd04608           3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGKVQP----SDPVSK-------------AL   65 (124)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhccCC----CCcHHH-------------Hh
Confidence            5778999999999999999999999999998899999999999987544322111    356776             67


Q ss_pred             CCcceEEcCCCCHHHHHHHHH---------hCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 016866          328 GQRCQMCLRSDPLHKVMERLA---------NPGVRRLVIVEAGSKRVEGIISLSDVFRFL  378 (381)
Q Consensus       328 ~~~~~~v~~~~tl~~~~~~m~---------~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l  378 (381)
                      ..++.++.+++++.++.+.|.         ..+.+++||+| ++|+++|+||..||++++
T Consensus        66 ~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~Givt~~Dl~~~~  124 (124)
T cd04608          66 YKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKE-KQEKPIGIVTKIDLLSYI  124 (124)
T ss_pred             hccceecCCCCCHHHHHhhcccCCceEEEeccccccccccc-cccceEEEEehhHhhhhC
Confidence            778999999999999999653         33678888998 468999999999999875

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.57  E-value=7e-14  Score=113.57  Aligned_cols=117  Identities=21%  Similarity=0.372  Sum_probs=95.5

Q ss_pred             CCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhccc------ccccccHHHHHhcCCCC
Q 016866          247 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI------HLDEMNIHQALQLGQDA  320 (381)
Q Consensus       247 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~------~~~~~~v~~~l~~~~~~  320 (381)
                      +++.++.+++++.++++.|.+.+++++||+|++|+++|+++..|++...........      .....++.+        
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~--------   73 (124)
T cd04600           2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGD--------   73 (124)
T ss_pred             CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHH--------
Confidence            367889999999999999999999999999988999999999999876543221000      000123333        


Q ss_pred             CCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866          321 NPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  377 (381)
Q Consensus       321 ~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~  377 (381)
                           +|..++.++.+++++.++++.|.+++.+++||+|+ +|+++|+||..|++++
T Consensus        74 -----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~-~g~~~Gvit~~di~~~  124 (124)
T cd04600          74 -----IMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDE-DRRLVGIVTQTDLIAA  124 (124)
T ss_pred             -----hccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcC-CCCEEEEEEhHHhhcC
Confidence                 66678999999999999999999999999999994 7999999999999864

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.56  E-value=1.5e-13  Score=109.41  Aligned_cols=112  Identities=21%  Similarity=0.404  Sum_probs=94.2

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866          248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  327 (381)
Q Consensus       248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m  327 (381)
                      ++.++.++.++.++++.|.+.+++.+||+|++++++|+++..|+.+.+.......   ...++.+             +|
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~---~~~~~~~-------------~~   65 (113)
T cd04623           2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGASA---LDTPVSE-------------IM   65 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCCCc---cccCHHH-------------hc
Confidence            4667899999999999999999999999998899999999999998554321110   0235555             56


Q ss_pred             CCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866          328 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  377 (381)
Q Consensus       328 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~  377 (381)
                      ..++.++.+++++.++++.|.+.+.+++||++ + |+++|+||..|++++
T Consensus        66 ~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~-~-~~~~Gvit~~di~~~  113 (113)
T cd04623          66 TRNVITVTPDDTVDEAMALMTERRFRHLPVVD-G-GKLVGIVSIGDVVKA  113 (113)
T ss_pred             CCCcEEECCCCcHHHHHHHHHHcCCCEeEEEe-C-CEEEEEEEHHHhhcC
Confidence            66789999999999999999999999999999 4 899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.55  E-value=6.2e-14  Score=133.51  Aligned_cols=120  Identities=13%  Similarity=0.184  Sum_probs=104.1

Q ss_pred             cccccccCCC--ceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhc
Q 016866          239 PRIGEANGRP--FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  316 (381)
Q Consensus       239 ~~v~~~~~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~  316 (381)
                      .+|+++|.++  +.++++++++.+|++.|.+.+...+||+|++|+++|+++..|+.+....+...     +.++.+    
T Consensus       197 ~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~~~~~-----~~~v~~----  267 (321)
T PRK11543        197 NKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGGGAL-----TTPVNE----  267 (321)
T ss_pred             hHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHhCCCCc-----CCcHHH----
Confidence            4678889988  99999999999999999999999999999999999999999998855422110     234555    


Q ss_pred             CCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866          317 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  377 (381)
Q Consensus       317 ~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~  377 (381)
                               +|..++.++.+++++.+|++.|.++++.++||||+ +|+++|+||..|++++
T Consensus       268 ---------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~lvGvIt~~di~~~  318 (321)
T PRK11543        268 ---------AMTRGGTTLQAQSRAIDAKEILMKRKITAAPVVDE-NGKLTGAINLQDFYQA  318 (321)
T ss_pred             ---------hcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHhc
Confidence                     67778999999999999999999999999999994 6899999999999975

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.54  E-value=1.6e-13  Score=111.56  Aligned_cols=119  Identities=20%  Similarity=0.291  Sum_probs=91.1

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCcEEEEEcCC-CcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCccc
Q 016866          248 PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF  326 (381)
Q Consensus       248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~  326 (381)
                      ++.++.+++++.+|++.|.+++++++||+|++ |+++|+++..|++++...+....... +......+..       ..+
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~-~~~~~~~~~~-------~~~   73 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGL-DPLYPIPLRD-------LTI   73 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccch-hhhhhhhhhh-------ccc
Confidence            56789999999999999999999999999987 99999999999988654221110000 0000000000       014


Q ss_pred             CCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHH
Q 016866          327 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVF  375 (381)
Q Consensus       327 m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl  375 (381)
                      |..++.++.+++++.+|++.|.+++.+++||+|+ +++++|+||.+|+-
T Consensus        74 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~~vGiit~~di~  121 (123)
T cd04627          74 GTSDVISINGDQPLIDALHLMHNEGISSVAVVDN-QGNLIGNISVTDVR  121 (123)
T ss_pred             CcCCceEeCCCCCHHHHHHHHHHcCCceEEEECC-CCcEEEEEeHHHhh
Confidence            6678899999999999999999999999999994 68999999999973

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.54  E-value=1.1e-13  Score=112.94  Aligned_cols=121  Identities=21%  Similarity=0.309  Sum_probs=93.2

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHH---HHhcCCCCCCCc
Q 016866          248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQ---ALQLGQDANPSL  324 (381)
Q Consensus       248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~---~l~~~~~~~~~~  324 (381)
                      .+.++.+++++.++++.|.+++++++||+|++|+++|+++..|+++....+....    ..+...   ......   ...
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~~~~~~~----~~~~~~~~~~~~~~~---~~~   74 (126)
T cd04642           2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLSPDDLL----LYRTITFKELSEKFT---DSD   74 (126)
T ss_pred             CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhcCcchhh----cccchhhhhhhhhcc---ccc
Confidence            4678999999999999999999999999998999999999999988654221110    001000   000000   001


Q ss_pred             ccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 016866          325 GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  376 (381)
Q Consensus       325 ~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~  376 (381)
                      ..|..++.++.+++++.+|++.|.+++.+++||+|+ +++++|+||.+||++
T Consensus        75 ~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~-~~~~~Giit~~dil~  125 (126)
T cd04642          75 GVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDE-EGKPIGVITLTDIIS  125 (126)
T ss_pred             ccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECC-CCCEEEEEEHHHHhc
Confidence            145668899999999999999999999999999994 689999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.54  E-value=1.1e-13  Score=107.64  Aligned_cols=95  Identities=15%  Similarity=0.347  Sum_probs=85.9

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866          248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  327 (381)
Q Consensus       248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m  327 (381)
                      ++.++.++.++.+|++.|.+.+++.+||+|++|+++|+++.+|+.+..                                
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~--------------------------------   49 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAKS--------------------------------   49 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcCC--------------------------------
Confidence            567899999999999999999999999999899999999999998721                                


Q ss_pred             CCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866          328 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  377 (381)
Q Consensus       328 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~  377 (381)
                        .+.++.+++++.++++.|.+++.+++||+|+ +|+++|+||.+|++++
T Consensus        50 --~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~-~~~~~Giit~~di~~~   96 (96)
T cd04614          50 --EVVTATKRTTVSECAQKMKRNRIEQIPIING-NDKLIGLLRDHDLLKP   96 (96)
T ss_pred             --CcEEecCCCCHHHHHHHHHHhCCCeeeEECC-CCcEEEEEEHHHhhcC
Confidence              1568999999999999999999999999994 5899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.53  E-value=2.1e-13  Score=110.38  Aligned_cols=116  Identities=19%  Similarity=0.322  Sum_probs=94.9

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhccc-----ccccccHHHHHhcCCCCCC
Q 016866          248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI-----HLDEMNIHQALQLGQDANP  322 (381)
Q Consensus       248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~-----~~~~~~v~~~l~~~~~~~~  322 (381)
                      ++.++.+++++.++++.|.+.+++.+||+|++|+++|+++..|+.+..........     .....++.+          
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~----------   71 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAE----------   71 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhccccccccccccccccCcCHHH----------
Confidence            56789999999999999999999999999988999999999999886543221100     001234444          


Q ss_pred             CcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866          323 SLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  377 (381)
Q Consensus       323 ~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~  377 (381)
                         +|..++.++.+++++.++++.|.+.+.+.+||+|+ +|+++|+||..|++++
T Consensus        72 ---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~dl~~~  122 (122)
T cd04803          72 ---VMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDD-KGTLVGIITRSDFLRL  122 (122)
T ss_pred             ---hhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcC-CCCEEEEEEHHHhhcC
Confidence               55567899999999999999999999999999994 6899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.53  E-value=3.9e-13  Score=106.74  Aligned_cols=108  Identities=21%  Similarity=0.436  Sum_probs=93.0

Q ss_pred             CCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCccc
Q 016866          247 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF  326 (381)
Q Consensus       247 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~  326 (381)
                      +++.++.++.++.++++.|.+++.+.+||+|++|+++|+++..|+++....+.        .++.+             +
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~--------~~~~~-------------~   60 (110)
T cd04605           2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVARDK--------KSVED-------------I   60 (110)
T ss_pred             CCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHhhCc--------cCHHH-------------h
Confidence            36778999999999999999999999999998899999999999987544221        23444             4


Q ss_pred             CCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 016866          327 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  376 (381)
Q Consensus       327 m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~  376 (381)
                      |..++.++.+++++.++++.|.+++.+.+||+++ +|+++|+||..|+++
T Consensus        61 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~G~v~~~di~~  109 (110)
T cd04605          61 MTRNVITATPDEPIDVAARKMERHNISALPVVDA-ENRVIGIITSEDISK  109 (110)
T ss_pred             cCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECC-CCcEEEEEEHHHhhh
Confidence            5567889999999999999999999999999994 689999999999975

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.53  E-value=1.6e-13  Score=109.60  Aligned_cols=113  Identities=20%  Similarity=0.293  Sum_probs=94.1

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866          248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  327 (381)
Q Consensus       248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m  327 (381)
                      ++.++.++.++.++++.|.+.+.+.+||+|++|+++|+++..|+.+.+....+...  .+.++.+             +|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~--~~~~v~~-------------~~   66 (114)
T cd04629           2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSYHCD--GVATVRD-------------IM   66 (114)
T ss_pred             CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhhhccC--CCccHHH-------------Hh
Confidence            46788999999999999999999999999989999999999999875543222110  1245555             55


Q ss_pred             CCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866          328 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  377 (381)
Q Consensus       328 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~  377 (381)
                      ..++.++.+++++.++++.|.+++.+++||+| + |+++|+||..||+++
T Consensus        67 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~Gvit~~di~~~  114 (114)
T cd04629          67 TTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVD-D-GKLVGQISRRDVLRA  114 (114)
T ss_pred             ccCceEECCCCcHHHHHHHHHHhCCCccCEEE-C-CEEEEEEEHHHHhcC
Confidence            55788999999999999999999999999999 4 899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.53  E-value=2.7e-13  Score=108.35  Aligned_cols=110  Identities=18%  Similarity=0.271  Sum_probs=92.9

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866          248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  327 (381)
Q Consensus       248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m  327 (381)
                      .+.++.++.++.++++.|.+.+.+.+||+|++|+++|+++.+|+.+....+...     +.++.+             +|
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~~~-----~~~v~~-------------~~   64 (113)
T cd04607           3 KQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLKGLSL-----DDPVSE-------------VM   64 (113)
T ss_pred             cceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHhcCCCc-----CCCHHH-------------hh
Confidence            356789999999999999999999999999899999999999998754422110     235665             45


Q ss_pred             CCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 016866          328 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  376 (381)
Q Consensus       328 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~  376 (381)
                      ..++.++.+++++.++++.|.+++.+++||+|+ +|+++|+||.+||+.
T Consensus        65 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~di~~  112 (113)
T cd04607          65 NRNPITAKVGSSREEILALMRERSIRHLPILDE-EGRVVGLATLDDLLS  112 (113)
T ss_pred             cCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECC-CCCEEEEEEhHHhcc
Confidence            557889999999999999999999999999994 689999999999974

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.53  E-value=2.5e-13  Score=107.05  Aligned_cols=104  Identities=18%  Similarity=0.226  Sum_probs=90.0

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866          248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  327 (381)
Q Consensus       248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m  327 (381)
                      ++.+++++.++.+|++.|.+.+.+.+||+|++|+++|+++..|+.+...           .++.+             +|
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~~-----------~~~~~-------------~~   57 (106)
T cd04582           2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARASG-----------GCCGD-------------HA   57 (106)
T ss_pred             CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhcc-----------cchhh-------------hc
Confidence            4678899999999999999999999999998899999999999986421           12333             45


Q ss_pred             CCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 016866          328 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  376 (381)
Q Consensus       328 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~  376 (381)
                      ...+.++.+++++.++++.|.+++...+||+| ++++++|+||..|+++
T Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvi~~~~l~~  105 (106)
T cd04582          58 EPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVD-EDGRYVGEVTQRSIAD  105 (106)
T ss_pred             ccCCEEECCCCCHHHHHHHHHHCCCCeeeEEC-CCCcEEEEEEHHHhhc
Confidence            55678899999999999999999999999999 4689999999999975

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.53  E-value=2.5e-13  Score=108.88  Aligned_cols=114  Identities=18%  Similarity=0.292  Sum_probs=91.6

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhccc-ccccccHHHHHhcCCCCCCCccc
Q 016866          248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI-HLDEMNIHQALQLGQDANPSLGF  326 (381)
Q Consensus       248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~-~~~~~~v~~~l~~~~~~~~~~~~  326 (381)
                      ++.++.+++++.++++.|.+.+++.+||+|++|+++|+++.+|+.+.......... .+.+.++.+             +
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~-------------~   68 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLENLDLERLVDLKVID-------------V   68 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHH-------------H
Confidence            46789999999999999999999999999988999999999999886543211110 000234554             5


Q ss_pred             CCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866          327 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  377 (381)
Q Consensus       327 m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~  377 (381)
                      |..++.++.+++++.++++.|.+.+  .+||+| ++|+++|+||..|++++
T Consensus        69 ~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~-~~~~~~Gvit~~dil~~  116 (116)
T cd04643          69 MNTDVPVIIDDADIEEILHLLIDQP--FLPVVD-DDGIFIGIITRREILKA  116 (116)
T ss_pred             hcCCCceecCCCCHHHHHHHHhcCC--ceeEEe-CCCeEEEEEEHHHhhcC
Confidence            5567889999999999999998865  599999 47899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.53  E-value=1.7e-13  Score=109.74  Aligned_cols=111  Identities=22%  Similarity=0.346  Sum_probs=90.3

Q ss_pred             CceEecCCCCHHHHHHHHHhCC-CcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCccc
Q 016866          248 PFAMLRPTASLGSALALLVQAD-VSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF  326 (381)
Q Consensus       248 ~~~~v~~~~~l~~a~~~m~~~~-~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~  326 (381)
                      ++.++++++++.++++.|.+++ .+.+||+|++|+++|+++..|+.........      +.++.+++..          
T Consensus         2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~~------~~~v~~~~~~----------   65 (114)
T cd04801           2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPTSQWA------QTTVIQVMTP----------   65 (114)
T ss_pred             CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHHhhcc------ccchhhhhcc----------
Confidence            5678999999999999997775 8999999988999999999999886542211      2345553211          


Q ss_pred             CCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 016866          327 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  376 (381)
Q Consensus       327 m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~  376 (381)
                       ..++.++.+++++.++++.|.+++.+++||+|+ +++++|++|..||++
T Consensus        66 -~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~-~~~~~Gvl~~~di~~  113 (114)
T cd04801          66 -AAKLVTVLSEESLAEVLKLLEEQGLDELAVVED-SGQVIGLITEADLLR  113 (114)
T ss_pred             -cccceEECCCCcHHHHHHHHHHCCCCeeEEEcC-CCcEEEEEeccceec
Confidence             013668999999999999999999999999994 689999999999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.53  E-value=3.9e-13  Score=107.10  Aligned_cols=110  Identities=18%  Similarity=0.357  Sum_probs=94.1

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866          248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  327 (381)
Q Consensus       248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m  327 (381)
                      ++.++.++.++.++++.|.+.+.+++||+|++|+++|+++..|+++.+..+...     +.++.+             +|
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~~~~~-----~~~v~~-------------~~   63 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAAGIDL-----DTPVSE-------------IM   63 (112)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhccCCC-----ccCHHH-------------hc
Confidence            466889999999999999999999999999889999999999998865533211     234554             55


Q ss_pred             CCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 016866          328 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  376 (381)
Q Consensus       328 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~  376 (381)
                      ..++.++.+++++.++++.|.+++...+||+|+ +|++.|++|..|+++
T Consensus        64 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-~g~~~Gilt~~dl~~  111 (112)
T cd04624          64 TRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDK-GGELVGVISIRDLVR  111 (112)
T ss_pred             cCCCEEECCCCcHHHHHHHHHHcCccEEEEEcC-CCcEEEEEEHHHhcc
Confidence            567889999999999999999999999999994 689999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.52  E-value=2.6e-13  Score=107.97  Aligned_cols=109  Identities=20%  Similarity=0.357  Sum_probs=93.0

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866          248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  327 (381)
Q Consensus       248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m  327 (381)
                      ++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+.+.......      +.++.+             +|
T Consensus         2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~------~~~v~~-------------~~   62 (111)
T cd04639           2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALAEGGP------DAPVRG-------------VM   62 (111)
T ss_pred             CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHHhcCC------CCcHHH-------------Hh
Confidence            46678999999999999998999999999988999999999999886543211      234555             45


Q ss_pred             CCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 016866          328 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  376 (381)
Q Consensus       328 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~  376 (381)
                      ..++.++.+++++.++++.|.+++.+++||+|+ +|+++|++|..|+.+
T Consensus        63 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~~G~it~~dl~~  110 (111)
T cd04639          63 RRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDG-SGRLVGLVTLENVGE  110 (111)
T ss_pred             cCCCcEECCCCcHHHHHHHHHhcCCceeeEEcC-CCCEEEEEEHHHhhc
Confidence            557889999999999999999999999999994 589999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.52  E-value=2.4e-13  Score=110.52  Aligned_cols=116  Identities=17%  Similarity=0.288  Sum_probs=94.1

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCcEEEEEcCC-CcEEEEEeHHHHHHHHhhhhhcc-c------ccccccHHHHHhcCCC
Q 016866          248 PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQ-I------HLDEMNIHQALQLGQD  319 (381)
Q Consensus       248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiis~~Di~~l~~~~~~~~-~------~~~~~~v~~~l~~~~~  319 (381)
                      ++.++.++.++.+++++|.+.+.+.+||+|++ |+++|+++..|+...+.+..... .      ...+.++.+       
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------   74 (125)
T cd04631           2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRS-------   74 (125)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHH-------
Confidence            46788999999999999999999999999987 99999999999998655322100 0      000123333       


Q ss_pred             CCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866          320 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  377 (381)
Q Consensus       320 ~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~  377 (381)
                            +|..++.++++++++.++++.|.+.+.+.+||+|+ +|+++|+||..||+++
T Consensus        75 ------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~~Gvit~~di~~~  125 (125)
T cd04631          75 ------IMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDD-DGKLVGIVTERDLLKA  125 (125)
T ss_pred             ------HhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcC-CCcEEEEEEHHHhhcC
Confidence                  55567899999999999999999999999999994 5899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.52  E-value=3.8e-13  Score=107.05  Aligned_cols=109  Identities=17%  Similarity=0.332  Sum_probs=92.9

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866          248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  327 (381)
Q Consensus       248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m  327 (381)
                      ++.+++++.++.++++.|.+.+.+++||+|++|+++|+++..|+..+......     .+.++.+             +|
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~~-----~~~~v~~-------------~~   63 (111)
T cd04626           2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDLFESF-----LEKKVFN-------------IV   63 (111)
T ss_pred             CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHhhccc-----ccCcHHH-------------Hh
Confidence            46789999999999999999999999999988999999999999875442211     1235555             45


Q ss_pred             CCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 016866          328 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  376 (381)
Q Consensus       328 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~  376 (381)
                      ..++.++.+++++.++++.|.+++.+++||+| + |+++|+||..|++.
T Consensus        64 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~G~it~~di~~  110 (111)
T cd04626          64 SQDVFYVNEEDTIDEALDIMREKQIGRLPVVD-D-NKLIGVVRTKDILD  110 (111)
T ss_pred             cCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeE-C-CEEEEEEEhHHhcc
Confidence            56788999999999999999999999999999 4 89999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.52  E-value=4.7e-13  Score=106.80  Aligned_cols=111  Identities=20%  Similarity=0.346  Sum_probs=93.1

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866          248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  327 (381)
Q Consensus       248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m  327 (381)
                      ++..+.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+.+.......    +.+.++.+             +|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~~~~----~~~~~i~~-------------~~   64 (113)
T cd04615           2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALESEE----LKDAKVRE-------------VM   64 (113)
T ss_pred             CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhhhhh----hcCCcHHH-------------hc
Confidence            35678999999999999999999999999988999999999999874332211    11245555             55


Q ss_pred             CCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 016866          328 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  376 (381)
Q Consensus       328 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~  376 (381)
                      ..++.++.+++++.++++.|.+++.+++||+|+ +|+++|++|..|+++
T Consensus        65 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~g~~~Gvvt~~dl~~  112 (113)
T cd04615          65 NSPVITIDANDSIAKARWLMSNNNISRLPVLDD-KGKVGGIVTEDDILR  112 (113)
T ss_pred             cCCceEECCCCcHHHHHHHHHHcCCCeeeEECC-CCeEEEEEEHHHhhc
Confidence            567899999999999999999999999999994 689999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.52  E-value=4.1e-13  Score=109.88  Aligned_cols=117  Identities=23%  Similarity=0.385  Sum_probs=93.1

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhh-ccc--------ccccccHHHHHhcCC
Q 016866          248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAY-AQI--------HLDEMNIHQALQLGQ  318 (381)
Q Consensus       248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~-~~~--------~~~~~~v~~~l~~~~  318 (381)
                      ++.++.++.++.+++++|.+.+.+.+||+|++|+++|+++..|+..++....+ ...        ...+.++.+      
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------   75 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYD------   75 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHH------
Confidence            46688999999999999999999999999988999999999999875432111 000        000122333      


Q ss_pred             CCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeC-CCCeEEEEEehHHHHHH
Q 016866          319 DANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEA-GSKRVEGIISLSDVFRF  377 (381)
Q Consensus       319 ~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~-~~~~liGiIs~~DIl~~  377 (381)
                             +|..+++++.+++++.++++.|.+++.+.+||++. ++++++|+||.+|++++
T Consensus        76 -------~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~~  128 (128)
T cd04632          76 -------AMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLRA  128 (128)
T ss_pred             -------HhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhcC
Confidence                   66678899999999999999999999999999852 46899999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.51  E-value=3.2e-13  Score=109.23  Aligned_cols=119  Identities=22%  Similarity=0.295  Sum_probs=92.9

Q ss_pred             CCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccccccccc
Q 016866          157 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  236 (381)
Q Consensus       157 ~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~  236 (381)
                      ++++++.+++++.+|++.|.+++.+++||+++   +|   +++|+++..|++.+.......      ....++...    
T Consensus         1 ~~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~---~~---~~~Giv~~~dl~~~~~~~~~~------~~~~~~~~~----   64 (120)
T cd04641           1 KNIATARPDTPLIDVLDMLVERRVSALPIVDE---NG---KVVDVYSRFDVINLAKEGAYN------NLDLTVGEA----   64 (120)
T ss_pred             CCcEEEcCCCCHHHHHHHHHHcCCCeeeEECC---CC---eEEEEEeHHHHHHHHhcCccc------cccCCHHHH----
Confidence            36789999999999999999999999999975   56   899999999999865322110      001111110    


Q ss_pred             cccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866          237 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  293 (381)
Q Consensus       237 ~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  293 (381)
                        ......|..++.++.+++++.++++.|.+++.+.+||+|++|+++|++|++|+++
T Consensus        65 --~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~  119 (120)
T cd04641          65 --LERRSQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ  119 (120)
T ss_pred             --HhhcccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence              0011234557789999999999999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.51  E-value=4.2e-13  Score=111.24  Aligned_cols=115  Identities=15%  Similarity=0.221  Sum_probs=93.6

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhccc-------------------ccccc
Q 016866          248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI-------------------HLDEM  308 (381)
Q Consensus       248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~-------------------~~~~~  308 (381)
                      ++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+++..........                   ...+.
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
T cd04621           2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVPL   81 (135)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccccccccc
Confidence            46688999999999999999999999999999999999999999986542211000                   00012


Q ss_pred             cHHHHHhcCCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866          309 NIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  377 (381)
Q Consensus       309 ~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~  377 (381)
                      ++.+             +|..++.++.+++++.++++.|.+++.+++||++ + |+++|+||.+|++++
T Consensus        82 ~v~~-------------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~-~-~~~~Gvit~~di~~~  135 (135)
T cd04621          82 VAED-------------IMTEEIITVSPNDDVVDAAKLMLEANISGLPVVD-N-DNIVGVITKTDICRE  135 (135)
T ss_pred             cHHH-------------hcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEe-C-CEEEEEEEHHHHhhC
Confidence            3333             6777888999999999999999999999999999 4 899999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.51  E-value=2.8e-13  Score=107.42  Aligned_cols=105  Identities=20%  Similarity=0.299  Sum_probs=91.9

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866          248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  327 (381)
Q Consensus       248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m  327 (381)
                      ++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+.....          +.++.+             +|
T Consensus         3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~----------~~~v~~-------------~~   59 (108)
T cd04596           3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGKDP----------DTTIEK-------------VM   59 (108)
T ss_pred             ccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhcccc----------cccHHH-------------Hh
Confidence            5778999999999999999999999999999999999999999975311          245666             45


Q ss_pred             CCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 016866          328 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  376 (381)
Q Consensus       328 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~  376 (381)
                      ..++.++.+++++.++++.|.+++.+.+||+| ++|+++|++|..|+++
T Consensus        60 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~G~it~~di~~  107 (108)
T cd04596          60 TKNPITVNPKTSVASVAHMMIWEGIEMLPVVD-DNKKLLGIISRQDVLK  107 (108)
T ss_pred             cCCCeEECCCCCHHHHHHHHHHcCCCeeeEEc-CCCCEEEEEEHHHhhc
Confidence            55788999999999999999999999999999 4689999999999986

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=99.51  E-value=9.5e-14  Score=141.41  Aligned_cols=289  Identities=13%  Similarity=0.169  Sum_probs=179.5

Q ss_pred             Hhhh--CcccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeecccCCCCcEEEEeehHHHHHHHHHhccCCCCCChhH
Q 016866           49 FLST--HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEE  126 (381)
Q Consensus        49 ~l~~--~~~~d~~p~s~~vi~ld~~~~v~~A~~~l~~~~i~~~pV~d~~~~~~vGilt~~D~~~il~~~~~~~~~~~~~~  126 (381)
                      ++.+  .++.|++-  .+++++++++++.+|++.|.+++++.+||+|++ ++++|++|..|+.+.+......      +.
T Consensus        62 ll~~~~~~V~dim~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~l~Givt~~di~~~~~~~~~~------~~  132 (546)
T PRK14869         62 LIEDVKPQVRDLEI--DKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEE-GKLLGLVSLSDLARAYMDILDP------EI  132 (546)
T ss_pred             hhhccCCcHHHhcC--CCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHhhcch------hh
Confidence            4444  56778773  479999999999999999999999999999965 5699999999999866532210      00


Q ss_pred             Hhh--ccHHHHHHHHHhhhcccc------CCCCC-------------CCCC-CCceEeCCCCCHHHHHHHHHhCCcceEE
Q 016866          127 LET--HTISAWKVGKLQLNLKRQ------MDGNG-------------RPCP-RPLVQAGPYDSLKEVALKILQNKVATVP  184 (381)
Q Consensus       127 l~~--~~i~~~~~~~~~~~~~~~------~~~~g-------------~~~~-~~~i~v~~~~sl~~a~~~m~~~~i~~lp  184 (381)
                      +..  .++..+.+   .++.+..      ....+             ..+. ..++.+....   +....+.+.+++.++
T Consensus       133 ~~~~~~t~~~i~~---~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~---d~~~~ai~~~~~~lI  206 (546)
T PRK14869        133 LSKSPTSLENIIR---TLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDRE---DIQLAAIEAGVRLLI  206 (546)
T ss_pred             hhhcCCCHHHHHH---hcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcH---HHHHHHHHcCCCEEE
Confidence            100  01111111   0000000      00000             0112 2355554443   334457888999999


Q ss_pred             EEecCCCCCC------ccceEEEeehhhHHHHHhhhcccCCCCCccccCccccccccccccccccccC-CCceEecCCCC
Q 016866          185 IIHSTGPAGS------CQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANG-RPFAMLRPTAS  257 (381)
Q Consensus       185 Vvd~d~~~g~------~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~~~~v~~~~~-~~~~~v~~~~~  257 (381)
                      |+.+......      -..+..+.|..|.......-.         ...            .++++|. +++.+++++++
T Consensus       207 lt~g~~~~~~v~~la~~~~i~ii~t~~dt~~t~~~l~---------~~~------------~V~~iM~~~~~~~~~~~~~  265 (546)
T PRK14869        207 ITGGAPVSEDVLELAKENGVTVISTPYDTFTTARLIN---------QSI------------PVSYIMTTEDLVTFSKDDY  265 (546)
T ss_pred             ECCCCCCCHHHHHHHHhCCCeEEEecccHHHHHHHhh---------cCC------------CHHHhccCCCcEEECCCCc
Confidence            9865321100      003778888888877543211         122            3456698 88999999999


Q ss_pred             HHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhc--ccccccccHHHHHhcCC----CCCCCcc-cCCCc
Q 016866          258 LGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYA--QIHLDEMNIHQALQLGQ----DANPSLG-FNGQR  330 (381)
Q Consensus       258 l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~--~~~~~~~~v~~~l~~~~----~~~~~~~-~m~~~  330 (381)
                      +.++.+.|.+++++.+||+|++|+++|++|.+|++........-  .... ...... +....    ....+.+ +++..
T Consensus       266 ~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~~~~~~iLVD~~e~-~q~~~~-~~~~~i~~iiDHH~~~~~~~~~  343 (546)
T PRK14869        266 LEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLSPVRKKVILVDHNEK-SQAVEG-IEEAEILEIIDHHRLGDIQTSN  343 (546)
T ss_pred             HHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhccccCceEEEcCccc-cccccc-hhhceEEEEecCCccCCCCCCC
Confidence            99999999999999999999999999999999999854421100  0000 000000 00000    0011122 55555


Q ss_pred             ceEE---cCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866          331 CQMC---LRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  377 (381)
Q Consensus       331 ~~~v---~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~  377 (381)
                      ++.+   +...+..-+.+.|.+.++...|++.  +.-+.||+|-++.+++
T Consensus       344 pi~~~~~~~gst~tiv~~~~~~~~i~~~~~ia--~~ll~gIlsDT~~f~~  391 (546)
T PRK14869        344 PIFFRNEPVGSTSTIVARMYRENGIEPSPEIA--GLLLAAILSDTLLFKS  391 (546)
T ss_pred             CcEEEeeeeeeHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHHHhcCccC
Confidence            5444   4456777888999999998888776  3568899888887653

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.51  E-value=1.1e-13  Score=133.73  Aligned_cols=121  Identities=25%  Similarity=0.377  Sum_probs=106.6

Q ss_pred             cccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHh-hhhhcccccccccHHHHHhcC
Q 016866          239 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK-DKAYAQIHLDEMNIHQALQLG  317 (381)
Q Consensus       239 ~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~-~~~~~~~~~~~~~v~~~l~~~  317 (381)
                      .++++++..+++++++.+++.+|.+.|.+.|++++.++++++...||+|++|+....- ++...     ..+|++     
T Consensus       149 trv~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~~~-----~~~V~e-----  218 (610)
T COG2905         149 TRVGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGRSK-----TQKVSE-----  218 (610)
T ss_pred             HHHHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCCCc-----ccchhh-----
Confidence            4677888999999999999999999999999999999999999999999999998543 22111     245555     


Q ss_pred             CCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 016866          318 QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  379 (381)
Q Consensus       318 ~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~  379 (381)
                              +|+.|++++..++-+.+|+-+|..+++++|||++  +|+++|+||.+||++.+-
T Consensus       219 --------vmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e--~gq~~Gilt~~dIl~l~s  270 (610)
T COG2905         219 --------VMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE--DGQPLGILTLTDILRLFS  270 (610)
T ss_pred             --------hhccCceeecCcchHHHHHHHHHHhCCceeeeec--CCeeeEEeeHHHHHHhhC
Confidence                    8999999999999999999999999999999998  499999999999998764

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.50  E-value=5.4e-13  Score=106.39  Aligned_cols=113  Identities=19%  Similarity=0.339  Sum_probs=94.9

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866          248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  327 (381)
Q Consensus       248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m  327 (381)
                      ++.++.+++++.++++.|.+.+++.+||+|++|+++|+++..|+.+...+...    ....++.+             +|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~----~~~~~v~~-------------~~   64 (114)
T cd04613           2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILFDPSL----YDLVVASD-------------IM   64 (114)
T ss_pred             CceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHhcccc----cccEEHHH-------------hc
Confidence            46789999999999999999999999999988999999999999886543211    11245665             56


Q ss_pred             CCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866          328 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  377 (381)
Q Consensus       328 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~  377 (381)
                      ..++.++.+++++.++++.|...+.+++||+|++.++++|+++..|++++
T Consensus        65 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~~  114 (114)
T cd04613          65 TKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLSA  114 (114)
T ss_pred             cCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhcC
Confidence            66789999999999999999999999999998315899999999999863

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.50  E-value=3.5e-13  Score=109.05  Aligned_cols=116  Identities=16%  Similarity=0.296  Sum_probs=93.1

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhh-hccc----ccccccHHHHHhcCCCCCC
Q 016866          248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKA-YAQI----HLDEMNIHQALQLGQDANP  322 (381)
Q Consensus       248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~-~~~~----~~~~~~v~~~l~~~~~~~~  322 (381)
                      ++.++.++.++.++++.|.+.+.+++||+|++|+++|+++..|+++...... ....    .....++.+          
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------   71 (122)
T cd04635           2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEK----------   71 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHH----------
Confidence            5678999999999999999999999999998899999999999987421110 0000    001233333          


Q ss_pred             CcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866          323 SLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  377 (381)
Q Consensus       323 ~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~  377 (381)
                         +|..++.++.+++++.++++.|.+++.+++||+|+ +|+++|++|..|++++
T Consensus        72 ---~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~g~~~Gvit~~dl~~~  122 (122)
T cd04635          72 ---IMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNE-KDQLVGIVDRHDVLKA  122 (122)
T ss_pred             ---HhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcC-CCcEEEEEEhHHhhcC
Confidence               55667899999999999999999999999999994 6899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.50  E-value=3e-13  Score=133.78  Aligned_cols=115  Identities=16%  Similarity=0.242  Sum_probs=100.7

Q ss_pred             cccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCC
Q 016866          241 IGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDA  320 (381)
Q Consensus       241 v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~  320 (381)
                      +.++|.++++++.+++++.++++.|.+++++++||+|++++++|+++.+|+....      .    ..++.+        
T Consensus        91 v~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~~------~----~~~V~d--------  152 (479)
T PRK07807         91 SRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGVD------R----FTQVRD--------  152 (479)
T ss_pred             cccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcCc------c----CCCHHH--------
Confidence            3456888999999999999999999999999999999999999999999985421      0    134665        


Q ss_pred             CCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 016866          321 NPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  379 (381)
Q Consensus       321 ~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~  379 (381)
                           +|..++.++++++++.+|++.|.+++++++||+|+ +++++|+||.+||++...
T Consensus       153 -----iMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~-~g~lvGIIT~~DIl~~~~  205 (479)
T PRK07807        153 -----VMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDA-DGRLVGVLTRTGALRATI  205 (479)
T ss_pred             -----hccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcC-CCeEEEEEEHHHHHHHhh
Confidence                 67778999999999999999999999999999994 689999999999998653

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.50  E-value=5.5e-13  Score=109.82  Aligned_cols=126  Identities=16%  Similarity=0.281  Sum_probs=93.3

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccc--cccccH--HHHHhcCCCCCCC
Q 016866          248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIH--LDEMNI--HQALQLGQDANPS  323 (381)
Q Consensus       248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~--~~~~~v--~~~l~~~~~~~~~  323 (381)
                      ++.++.+++++.++++.|.+.+++++||+|++|+++|+++..|+.+...........  ......  ++..+  +....+
T Consensus         2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~   79 (132)
T cd04636           2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIK--KLLGKK   79 (132)
T ss_pred             CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHH--HHcCCC
Confidence            467899999999999999999999999999889999999999998865422110000  000000  00000  000001


Q ss_pred             cc-cCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866          324 LG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  377 (381)
Q Consensus       324 ~~-~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~  377 (381)
                      +. +|.+++..+.+++++.++++.|.+.+.+++||+| + |+++|++|..|++++
T Consensus        80 v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~iGvit~~dl~~~  132 (132)
T cd04636          80 VEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVD-D-GKLVGIISRGDIIRS  132 (132)
T ss_pred             HHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEE-C-CEEEEEEEHHHhhcC
Confidence            21 5667889999999999999999999999999999 4 899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=99.49  E-value=9.3e-13  Score=134.16  Aligned_cols=194  Identities=18%  Similarity=0.177  Sum_probs=136.4

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCc-----
Q 016866          154 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP-----  228 (381)
Q Consensus       154 ~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~-----  228 (381)
                      +|.++++++.+++++.+|++.|.+++++.+||+|+   +|   +++|++|..|+.+++.......  .......+     
T Consensus        73 im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g---~l~Givt~~di~~~~~~~~~~~--~~~~~~~t~~~i~  144 (546)
T PRK14869         73 LEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDE---EG---KLLGLVSLSDLARAYMDILDPE--ILSKSPTSLENII  144 (546)
T ss_pred             hcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---EEEEEEEHHHHHHHHHhhcchh--hhhhcCCCHHHHH
Confidence            67889999999999999999999999999999976   57   8999999999999776433110  00000011     


Q ss_pred             -----------------cccccccccc-cccccccCCC-ceEecCCCCHHHHHHHHHhCCCcEEEEEcCC----------
Q 016866          229 -----------------VSSIQLGTWV-PRIGEANGRP-FAMLRPTASLGSALALLVQADVSSIPIVDDN----------  279 (381)
Q Consensus       229 -----------------i~~l~ig~~~-~~v~~~~~~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~----------  279 (381)
                                       .+.+.+|.-. ..+.+.+.+. ++.+ .+.  .++...+.+.++++++|+...          
T Consensus       145 ~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~-gdr--~d~~~~ai~~~~~~lIlt~g~~~~~~v~~la  221 (546)
T PRK14869        145 RTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIV-GDR--EDIQLAAIEAGVRLLIITGGAPVSEDVLELA  221 (546)
T ss_pred             HhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEE-cCc--HHHHHHHHHcCCCEEEECCCCCCCHHHHHHH
Confidence                             1111111100 1112233443 4444 333  344446788999999988643          


Q ss_pred             --CcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccCC-CcceEEcCCCCHHHHHHHHHhCCCCEEE
Q 016866          280 --DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNG-QRCQMCLRSDPLHKVMERLANPGVRRLV  356 (381)
Q Consensus       280 --g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m~-~~~~~v~~~~tl~~~~~~m~~~~~~~l~  356 (381)
                        +.+.++.|..|.......-..      ..++.+             +|+ +++.++++++++.++.+.|.+++.+++|
T Consensus       222 ~~~~i~ii~t~~dt~~t~~~l~~------~~~V~~-------------iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~P  282 (546)
T PRK14869        222 KENGVTVISTPYDTFTTARLINQ------SIPVSY-------------IMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYP  282 (546)
T ss_pred             HhCCCeEEEecccHHHHHHHhhc------CCCHHH-------------hccCCCcEEECCCCcHHHHHHHHHhcCCCceE
Confidence              247778888887765432110      356666             787 7899999999999999999999999999


Q ss_pred             EEeCCCCeEEEEEehHHHHHHh
Q 016866          357 IVEAGSKRVEGIISLSDVFRFL  378 (381)
Q Consensus       357 Vvd~~~~~liGiIs~~DIl~~l  378 (381)
                      ||| ++|+++|+||..|+++..
T Consensus       283 Vvd-~~g~lvGiit~~dl~~~~  303 (546)
T PRK14869        283 VVD-EDGKVVGVISRYHLLSPV  303 (546)
T ss_pred             EEc-CCCCEEEEEEHHHhhccc
Confidence            999 479999999999998753

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.49  E-value=4e-13  Score=111.13  Aligned_cols=115  Identities=23%  Similarity=0.376  Sum_probs=93.2

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhc------cc------------cccccc
Q 016866          248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYA------QI------------HLDEMN  309 (381)
Q Consensus       248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~------~~------------~~~~~~  309 (381)
                      ++.++.++.++.++++.|.+.+.+++||+|++|+++|+++..|+.+....+...      ..            .....+
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (135)
T cd04586           3 DVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHGRK   82 (135)
T ss_pred             CCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcCCC
Confidence            677899999999999999999999999999889999999999998754322100      00            000122


Q ss_pred             HHHHHhcCCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866          310 IHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  377 (381)
Q Consensus       310 v~~~l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~  377 (381)
                      +.+             +|..++.++.+++++.++++.|.+.+.+++||+|  +|+++|+||..|++++
T Consensus        83 v~~-------------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd--~g~~~Gvit~~di~~~  135 (135)
T cd04586          83 VAD-------------VMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR--GGRLVGIVSRADLLRA  135 (135)
T ss_pred             HHH-------------HhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec--CCEEEEEEEhHhhhcC
Confidence            222             5666789999999999999999999999999999  4899999999999864

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.49  E-value=8.3e-13  Score=105.01  Aligned_cols=108  Identities=16%  Similarity=0.361  Sum_probs=91.5

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCcEEEEEcCC-CcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCccc
Q 016866          248 PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF  326 (381)
Q Consensus       248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~  326 (381)
                      ++.++.+++++.++++.|.+.+.+++||+|++ |+++|+++..|+.+....+..      ..++..             +
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~~------~~~~~~-------------~   62 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEE------DLDLRD-------------L   62 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCCC------cCCHHH-------------H
Confidence            46789999999999999999999999999987 999999999999986653221      123333             2


Q ss_pred             CCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 016866          327 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  376 (381)
Q Consensus       327 m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~  376 (381)
                      | .++.++.+++++.++++.|.+++.+++||+|+ +|+++|+||..|+++
T Consensus        63 ~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~di~~  110 (111)
T cd04590          63 L-RPPLFVPESTPLDDLLEEMRKERSHMAIVVDE-YGGTAGLVTLEDILE  110 (111)
T ss_pred             h-cCCeecCCCCcHHHHHHHHHhcCCcEEEEEEC-CCCEEEEeEHHHhhc
Confidence            3 35789999999999999999999999999994 789999999999975

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.49  E-value=1e-12  Score=103.99  Aligned_cols=106  Identities=19%  Similarity=0.309  Sum_probs=91.6

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866          248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  327 (381)
Q Consensus       248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m  327 (381)
                      ++..+.++.++.++++.|.+.+..++||+|++|+++|+++..|+......         ..++.+             +|
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~---------~~~v~~-------------~~   60 (109)
T cd04583           3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAYKE---------AKSLED-------------IM   60 (109)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHhhc---------CCcHhH-------------hh
Confidence            56788999999999999999999999999988999999999999875421         124444             45


Q ss_pred             CCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 016866          328 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  376 (381)
Q Consensus       328 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~  376 (381)
                      ...+.++++++++.++++.|.+.+.+++||+|+ +|+++|++|..|+++
T Consensus        61 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~-~g~~~Gvit~~~l~~  108 (109)
T cd04583          61 LEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDE-DGKLVGLITRSSLVD  108 (109)
T ss_pred             cCCceEECCCCcHHHHHHHHHHcCCceeeEECC-CCeEEEEEehHHhhc
Confidence            557889999999999999999999999999994 689999999999975

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.49  E-value=1e-12  Score=104.36  Aligned_cols=108  Identities=24%  Similarity=0.372  Sum_probs=92.5

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866          248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  327 (381)
Q Consensus       248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m  327 (381)
                      ++.++.+++++.++++.|.+.+++++||+|+ |+++|+++..|+++....+..      ..++.+             +|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~~l~~~~~~~~~------~~~v~~-------------~~   61 (110)
T cd04588           2 PLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHAIARGLE------LAKVKD-------------VM   61 (110)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhcccc------ccCHHH-------------Hh
Confidence            5678999999999999999999999999997 999999999999986543211      134555             44


Q ss_pred             CCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 016866          328 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  376 (381)
Q Consensus       328 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~  376 (381)
                      ..++.++.+++++.++++.|.+.+.+++||+|+ +|+++|+||..|+++
T Consensus        62 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~i~~~dl~~  109 (110)
T cd04588          62 TKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDD-EGRPVGIITRTDILR  109 (110)
T ss_pred             cCCceEECCCCCHHHHHHHHHhcCCCEEEEECC-CCCEEEEEEhHHhhc
Confidence            557899999999999999999999999999994 689999999999975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.49  E-value=1.4e-12  Score=130.47  Aligned_cols=173  Identities=18%  Similarity=0.231  Sum_probs=127.7

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccc
Q 016866          154 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  233 (381)
Q Consensus       154 ~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~  233 (381)
                      .|..+++++.+++++.+|++.|.+++++++||+|+   .+   +++|+++.+|+....            ....      
T Consensus        92 im~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~---~g---~lvGiVt~~DL~~~~------------~~~~------  147 (486)
T PRK05567         92 GVVTDPVTVTPDTTLAEALALMARYGISGVPVVDE---NG---KLVGIITNRDVRFET------------DLSQ------  147 (486)
T ss_pred             cccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEcc---CC---EEEEEEEHHHhhhcc------------cCCC------
Confidence            67889999999999999999999999999999975   56   899999999996410            0111      


Q ss_pred             ccccccccccccC-CCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHH
Q 016866          234 LGTWVPRIGEANG-RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQ  312 (381)
Q Consensus       234 ig~~~~~v~~~~~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~  312 (381)
                            .+.++|. .+++++.+++++.++++.|.+++++.+||+|++|+++|++|.+|+++...........-..+.+..
T Consensus       148 ------~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~a  221 (486)
T PRK05567        148 ------PVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEFPNACKDEQGRLRVGA  221 (486)
T ss_pred             ------cHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhhCCCcccccCCCEEEEe
Confidence                  2344476 688999999999999999999999999999999999999999999986431100000000011111


Q ss_pred             HHhcCCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866          313 ALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  377 (381)
Q Consensus       313 ~l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~  377 (381)
                                   .|     ...+  .-.+.++.|.+.+++. +++|..+++..|+++..+.++.
T Consensus       222 -------------ai-----~~~~--~~~e~a~~L~~agvdv-ivvD~a~g~~~~vl~~i~~i~~  265 (486)
T PRK05567        222 -------------AV-----GVGA--DNEERAEALVEAGVDV-LVVDTAHGHSEGVLDRVREIKA  265 (486)
T ss_pred             -------------ec-----ccCc--chHHHHHHHHHhCCCE-EEEECCCCcchhHHHHHHHHHh
Confidence                         12     2222  2278888999999994 5777546888888777666654

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.49  E-value=7.7e-13  Score=105.54  Aligned_cols=111  Identities=15%  Similarity=0.301  Sum_probs=93.9

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866          248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  327 (381)
Q Consensus       248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m  327 (381)
                      ++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..++.+++.....    ....++.+             +|
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~~~~~----~~~~~v~~-------------~~   65 (114)
T cd04604           3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEKGLD----ILTLPVAD-------------VM   65 (114)
T ss_pred             cccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHhccCc----cccCCHHH-------------hh
Confidence            46678999999999999998889999999988999999999999987653221    11234555             45


Q ss_pred             CCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 016866          328 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  376 (381)
Q Consensus       328 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~  376 (381)
                      ..++.++.+++++.++++.|..++.+.+||+|+ +++++|+|+..||++
T Consensus        66 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~iG~it~~di~~  113 (114)
T cd04604          66 TRNPKTIDPDALAAEALELMEENKITALPVVDD-NGRPVGVLHIHDLLR  113 (114)
T ss_pred             ccCCeEECCCCcHHHHHHHHHHcCCCEEEEECC-CCCEEEEEEHHHhhc
Confidence            557889999999999999999999999999994 689999999999986

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.49  E-value=7.2e-13  Score=105.65  Aligned_cols=111  Identities=17%  Similarity=0.308  Sum_probs=91.7

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866          248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  327 (381)
Q Consensus       248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m  327 (381)
                      ++.++.++.++.++++.|.+++.+.+||+|+ |+++|+++..|++..........   ...++.+             +|
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~~~---~~~~v~~-------------i~   64 (113)
T cd04587           2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG-NKLVGIFTSKDIALRVVAQGLDP---ESTLVER-------------VM   64 (113)
T ss_pred             CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHHhcCCCc---CcCCHHH-------------hc
Confidence            5678899999999999999999999999997 99999999999985332111110   0135555             56


Q ss_pred             CCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 016866          328 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  376 (381)
Q Consensus       328 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~  376 (381)
                      ..++.++.+++++.++++.|..++.+++||+|+ +++++|+||..|++.
T Consensus        65 ~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~~Gvvs~~dl~~  112 (113)
T cd04587          65 TPNPVCATSDTPVLEALHLMVQGKFRHLPVVDK-SGQVVGLLDVTKLTH  112 (113)
T ss_pred             CCCCeEEcCCCCHHHHHHHHHHcCCCcccEECC-CCCEEEEEEHHHhcc
Confidence            667889999999999999999999999999994 689999999999975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.49  E-value=5.7e-13  Score=108.83  Aligned_cols=112  Identities=21%  Similarity=0.402  Sum_probs=88.2

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHH-----hhhhhcccccccccHHHHHhcCCCCCC
Q 016866          248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA-----KDKAYAQIHLDEMNIHQALQLGQDANP  322 (381)
Q Consensus       248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~-----~~~~~~~~~~~~~~v~~~l~~~~~~~~  322 (381)
                      ++.++.+++++.++++.|.+++...+||+|++|+++|+++..|+.+..     ..+.   ..+.+.++.+          
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~---~~~~~~~v~~----------   68 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQEGG---ISRSELTVAD----------   68 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHHHcC---CCchheEHHH----------
Confidence            467899999999999999999999999999889999999999998621     1110   0111345655          


Q ss_pred             CcccCCCcceEE------cCCCCHHHHHHHHHhCCCCEEEEEeCCC-CeEEEEEehHHHHH
Q 016866          323 SLGFNGQRCQMC------LRSDPLHKVMERLANPGVRRLVIVEAGS-KRVEGIISLSDVFR  376 (381)
Q Consensus       323 ~~~~m~~~~~~v------~~~~tl~~~~~~m~~~~~~~l~Vvd~~~-~~liGiIs~~DIl~  376 (381)
                         +|..+...+      .+++++.++++.|.+++.+++||+|+ + |+++|+||++||++
T Consensus        69 ---im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~-~~~~~~G~it~~di~~  125 (126)
T cd04640          69 ---VMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDR-EHHQIRGIISTSDIAR  125 (126)
T ss_pred             ---hcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEEC-CCCEEEEEEeHHHHhh
Confidence               454444333      36899999999999999999999994 5 79999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.48  E-value=2.2e-13  Score=110.99  Aligned_cols=117  Identities=23%  Similarity=0.445  Sum_probs=99.7

Q ss_pred             CCCCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccc
Q 016866          152 GRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  231 (381)
Q Consensus       152 g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~  231 (381)
                      ..+|..|++++.|++++.+|+++|.++|++.+||+++    +   +++|-+|..+|.+.+.+..           ..+.+
T Consensus        68 ~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~----~---k~VGsItE~~iv~~~le~~-----------e~i~~  129 (187)
T COG3620          68 KTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE----D---KVVGSITENDIVRALLEGM-----------ESIRS  129 (187)
T ss_pred             hhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC----C---eeeeeecHHHHHHHHhccc-----------cchhh
Confidence            3489999999999999999999999999999999975    4   7999999999999775432           22233


Q ss_pred             ccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHh
Q 016866          232 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  296 (381)
Q Consensus       232 l~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~  296 (381)
                      +       ++.++|..+++++++++++..+.+++..+  .++.|+ ++|+++|+||+.|++++..
T Consensus       130 ~-------~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~--~AVlV~-e~G~~vGIITk~DI~k~~~  184 (187)
T COG3620         130 L-------RVREVMGEPFPTVSPDESLNVISQLLEEH--PAVLVV-ENGKVVGIITKADIMKLLA  184 (187)
T ss_pred             h-------hHHHHhcCCCCcCCCCCCHHHHHHHHhhC--CeEEEE-eCCceEEEEeHHHHHHHHh
Confidence            3       56778999999999999999998888765  577788 5899999999999999765

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.48  E-value=5.1e-13  Score=124.76  Aligned_cols=120  Identities=13%  Similarity=0.361  Sum_probs=100.9

Q ss_pred             ccccccCC--CceEecCCCCHHHHHHHHHhCCCcEEEEEcCC-CcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhc
Q 016866          240 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  316 (381)
Q Consensus       240 ~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~  316 (381)
                      +++++|.+  ++.++.+++++.++++.+.+++++++||++++ ++++|+++.+|++........      ..++.+    
T Consensus        68 ~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~~------~~~l~~----  137 (292)
T PRK15094         68 RVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAE------AFSMDK----  137 (292)
T ss_pred             EEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccCC------cCCHHH----
Confidence            55667887  68999999999999999999999999999875 799999999999864431110      123444    


Q ss_pred             CCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866          317 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  380 (381)
Q Consensus       317 ~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~  380 (381)
                               +|. ++.++++++++.++++.|.+++.+.++|+| +.|.++|+||+.||+..++|
T Consensus       138 ---------l~r-~~~~V~e~~~l~~~L~~m~~~~~~~a~VvD-e~G~viGiVTleDIle~ivG  190 (292)
T PRK15094        138 ---------VLR-QAVVVPESKRVDRMLKEFRSQRYHMAIVID-EFGGVSGLVTIEDILELIVG  190 (292)
T ss_pred             ---------HcC-CCcCcCCCCcHHHHHHHHHhcCCEEEEEEe-CCCCEEEEeEHHHHHHHHhC
Confidence                     443 456899999999999999999999999999 47889999999999999986

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.48  E-value=1.3e-12  Score=103.76  Aligned_cols=107  Identities=23%  Similarity=0.454  Sum_probs=92.6

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866          248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  327 (381)
Q Consensus       248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m  327 (381)
                      ++.++..+.++.++.+.|.+.+.+++||+|+ |+++|+++..|+.+....+.      ...++.+             +|
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~dl~~~~~~~~------~~~~~~~-------------~~   62 (110)
T cd04595           3 PVKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDVEKALRHGL------GHAPVKD-------------YM   62 (110)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-CEEEEEEEHHHHHHHHhccc------ccCcHHH-------------Hh
Confidence            6778999999999999999999999999997 99999999999987553221      1356666             55


Q ss_pred             CCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 016866          328 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  376 (381)
Q Consensus       328 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~  376 (381)
                      ..++.++.+++++.++++.|.+++.+++||+|  +|+++|+||..|+++
T Consensus        63 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~~Gvvt~~di~~  109 (110)
T cd04595          63 STDVVTVPPDTPLSEVQELMVEHDIGRVPVVE--DGRLVGIVTRTDLLR  109 (110)
T ss_pred             cCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe--CCEEEEEEEhHHhhc
Confidence            56788999999999999999999999999999  489999999999975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.48  E-value=6.1e-13  Score=106.15  Aligned_cols=109  Identities=15%  Similarity=0.194  Sum_probs=90.6

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866          158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  237 (381)
Q Consensus       158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~  237 (381)
                      +++++.+++++.+|++.|.+++.+.+||+++   +|   +++|+++..|+.+....   .      ....          
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~dl~~~~~~---~------~~~~----------   56 (111)
T cd04603           2 QTVSVNCENPLREAIKMINELGARAVVVVDE---EN---KVLGQVTLSDLLEIGPN---D------YETL----------   56 (111)
T ss_pred             ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcC---CC---CEEEEEEHHHHHhhccc---c------cccc----------
Confidence            3578899999999999999999999999975   56   89999999999872110   0      0111          


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866          238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  293 (381)
Q Consensus       238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  293 (381)
                        .+.++|..++.++.+++++.+|+++|.+++.+.+||+|++|+++|++|.+|+++
T Consensus        57 --~v~~~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~  110 (111)
T cd04603          57 --KVCEVYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR  110 (111)
T ss_pred             --ChhheeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence              234457778889999999999999999999999999998899999999999975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.48  E-value=7.1e-13  Score=107.12  Aligned_cols=114  Identities=16%  Similarity=0.346  Sum_probs=92.6

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcc------cccccccHHHHHhcCCCCC
Q 016866          248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQ------IHLDEMNIHQALQLGQDAN  321 (381)
Q Consensus       248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~------~~~~~~~v~~~l~~~~~~~  321 (381)
                      ++.++.+++++.++++.|.+.+.+++||+|+ |+++|+++..|+.+.........      ..+...++.+         
T Consensus         2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------   71 (121)
T cd04633           2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG-GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSD---------   71 (121)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC-CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHH---------
Confidence            5678999999999999999999999999996 99999999999987544211100      0011223333         


Q ss_pred             CCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866          322 PSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  377 (381)
Q Consensus       322 ~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~  377 (381)
                          +|..++.++.+++++.++++.|.+.+.+++||+| + |+++|+||..|++++
T Consensus        72 ----~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~Gvi~~~dl~~~  121 (121)
T cd04633          72 ----IMTRPVITIEPDTSVSDVASLMLENNIGGLPVVD-D-GKLVGIVTRTDILRY  121 (121)
T ss_pred             ----HccCCceEECCCCcHHHHHHHHHHcCCCcccEEE-C-CEEEEEEEHHHhhcC
Confidence                5666889999999999999999999999999999 4 899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.48  E-value=1e-12  Score=104.28  Aligned_cols=110  Identities=24%  Similarity=0.356  Sum_probs=92.7

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866          248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  327 (381)
Q Consensus       248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m  327 (381)
                      ++.++.+++++.++++.|.+.+.+.+||+|+ |+++|+++..|+.+....+...     ..++.+             +|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~~-----~~~~~~-------------~~   62 (111)
T cd04612           2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVPAEGREA-----TVLVGD-------------VM   62 (111)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC-CeEEEEEEHHHHHHHHhcCccc-----ccCHHH-------------hc
Confidence            5678999999999999999999999999997 9999999999998755432110     123333             55


Q ss_pred             CCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866          328 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  377 (381)
Q Consensus       328 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~  377 (381)
                      ..++.++.+++++.++++.|.+++.+++||+|+ +++++|+||..|++++
T Consensus        63 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~it~~di~~~  111 (111)
T cd04612          63 TRDPVTASPDETLRDALKRMAERDIGRLPVVDD-SGRLVGIVSRSDLLRA  111 (111)
T ss_pred             cCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcC-CCCEEEEEEHHHhhhC
Confidence            668899999999999999999999999999994 6899999999999863

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.48  E-value=1.4e-12  Score=103.72  Aligned_cols=109  Identities=20%  Similarity=0.333  Sum_probs=91.6

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866          248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  327 (381)
Q Consensus       248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m  327 (381)
                      ++.++.++.++.++.+.|.+.+.+.+||+|+ |+++|+++..|+.+........    .+.++.+             +|
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~~----~~~~i~~-------------~~   63 (111)
T cd04800           2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD-GRLVGIVTDRDLRNRVVAEGLD----PDTPVSE-------------VM   63 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHhccCCC----ccCCHHH-------------Hh
Confidence            5678999999999999999999999999997 9999999999998743322111    1245555             45


Q ss_pred             CCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 016866          328 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  376 (381)
Q Consensus       328 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~  376 (381)
                      ..++.++.+++++.++++.|.+++.+++||++ + |+++|++|..|+++
T Consensus        64 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~Giit~~di~~  110 (111)
T cd04800          64 TAPPITIPPDATVFEALLLMLERGIHHLPVVD-D-GRLVGVISATDLLR  110 (111)
T ss_pred             CCCCeEECCCCcHHHHHHHHHHcCCCeeeEeE-C-CEEEEEEEHHHhhc
Confidence            56788999999999999999999999999999 4 89999999999985

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.47  E-value=3.6e-13  Score=133.48  Aligned_cols=172  Identities=13%  Similarity=0.151  Sum_probs=133.4

Q ss_pred             ccCCCCCCCCCCCceEeCCCCCHHHHHHHHHh-----CCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCC
Q 016866          146 RQMDGNGRPCPRPLVQAGPYDSLKEVALKILQ-----NKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSS  220 (381)
Q Consensus       146 ~~~~~~g~~~~~~~i~v~~~~sl~~a~~~m~~-----~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~  220 (381)
                      +..+.+|++|..+++++++++++.+|++.|.+     ++...++|+|+   ++   +++|+++.+|++..      .   
T Consensus       128 ~~e~tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~---~~---~l~GvV~l~dLl~a------~---  192 (449)
T TIGR00400       128 YSDDSAGRIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNE---SK---HLKGVLSIRDLILA------K---  192 (449)
T ss_pred             CCcchHHHhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECC---CC---eEEEEEEHHHHhcC------C---
Confidence            66677888999999999999999999999975     45678899965   46   79999999998651      0   


Q ss_pred             CCccccCccccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhh
Q 016866          221 SLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAY  300 (381)
Q Consensus       221 ~~~~~~~~i~~l~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~  300 (381)
                          ...            .++++|.+++.++.+++++.+|++.|.+++...+||+|++|+++|++|.+|+++...+.. 
T Consensus       193 ----~~~------------~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~~-  255 (449)
T TIGR00400       193 ----PEE------------ILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQSEA-  255 (449)
T ss_pred             ----CCC------------cHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHhhh-
Confidence                011            244558888999999999999999999999999999999999999999999999765322 


Q ss_pred             cccccccccHHHHHhcCCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866          301 AQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  377 (381)
Q Consensus       301 ~~~~~~~~~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~  377 (381)
                               .++++.             ....+..+++.+.+++..|.+++..+++|.     .+.|++| ..++..
T Consensus       256 ---------~ed~~~-------------~~gv~~~~~~~l~~~~~~~~~~R~~wL~v~-----~~~~~~t-~~ii~~  304 (449)
T TIGR00400       256 ---------TEDFYM-------------IAAVKPLDDSYFDTSILVMAKNRIIWLLVL-----LVSSTFT-ATIISN  304 (449)
T ss_pred             ---------HHHHHH-------------hcCCCCCcchhhhchHHHHHHhccchHHHH-----HHHHHHH-HHHHHH
Confidence                     133222             123344567888999999999999887765     2456665 555443

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.47  E-value=9.4e-13  Score=106.98  Aligned_cols=121  Identities=17%  Similarity=0.249  Sum_probs=92.7

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866          158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  237 (381)
Q Consensus       158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~  237 (381)
                      ++.++.+++++.+|++.|.+++++++||+|+  .+|   +++|+++..|+++++................++        
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~--~~~---~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~--------   68 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEE--ESG---EVIGILSQRRLVEFLWENARSFPGLDPLYPIPL--------   68 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEEeC--CCC---cEEEEEEHHHHHHHHHHhHHhccchhhhhhhhh--------
Confidence            5678999999999999999999999999976  226   799999999999876543211100000000000        


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866          238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  293 (381)
Q Consensus       238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  293 (381)
                        ...+.|..++.++.+++++.+|++.|.+++.+++||+|++|+++|+||.+|+..
T Consensus        69 --~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~~  122 (123)
T cd04627          69 --RDLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVRL  122 (123)
T ss_pred             --hhcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhhc
Confidence              112236678889999999999999999999999999998899999999999853

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.47  E-value=1.1e-12  Score=105.84  Aligned_cols=115  Identities=23%  Similarity=0.329  Sum_probs=92.9

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccc------cccccHHHHHhcCCCCC
Q 016866          248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIH------LDEMNIHQALQLGQDAN  321 (381)
Q Consensus       248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~------~~~~~v~~~l~~~~~~~  321 (381)
                      ++.++.++.++.++++.|.+.+.+.+||+|+ |+++|+++..|+.............      ..+.++.+         
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------   71 (122)
T cd04585           2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR-GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSD---------   71 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHhCCcceeeEecC-CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHH---------
Confidence            4678999999999999999999999999997 9999999999998865422110000      00122333         


Q ss_pred             CCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866          322 PSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  377 (381)
Q Consensus       322 ~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~  377 (381)
                          +|..++.++.+++++.++++.|.+.+.+++||+|+ +|+++|+||..||+++
T Consensus        72 ----~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvvt~~di~~~  122 (122)
T cd04585          72 ----IMTRDPITVSPDASVEEAAELMLERKISGLPVVDD-QGRLVGIITESDLFRA  122 (122)
T ss_pred             ----hccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECC-CCcEEEEEEHHHhhhC
Confidence                56678899999999999999999999999999994 6899999999999863

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.47  E-value=1.3e-12  Score=104.59  Aligned_cols=111  Identities=18%  Similarity=0.312  Sum_probs=89.6

Q ss_pred             CceEecCCCCHHHHHHHHHhCC-CcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCccc
Q 016866          248 PFAMLRPTASLGSALALLVQAD-VSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF  326 (381)
Q Consensus       248 ~~~~v~~~~~l~~a~~~m~~~~-~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~  326 (381)
                      ++.++.++.++.++++.|.+.+ ...+||+| +|+++|+++..|+.+....+..    ..+.++.+             +
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~~----~~~~~i~~-------------~   63 (115)
T cd04620           2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE-KGRLLGIFTERDIVRLTAIGKD----LSDLPIGE-------------V   63 (115)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC-CCcEEEEEeHHHHHHHHhcCCC----ccccCHHH-------------h
Confidence            4567899999999999998888 66777777 6999999999999885543211    11245555             5


Q ss_pred             CCCcceEEcCC--CCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866          327 NGQRCQMCLRS--DPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  377 (381)
Q Consensus       327 m~~~~~~v~~~--~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~  377 (381)
                      |..++.++.++  +++.++++.|.+++.+++||+|+ +|+++|+||..|++++
T Consensus        64 ~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~-~~~~~Gvit~~dl~~~  115 (115)
T cd04620          64 MTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDD-QGQLIGLVTAESIRQV  115 (115)
T ss_pred             cCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcC-CCCEEEEEEhHHhhcC
Confidence            55577888887  79999999999999999999994 6899999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.47  E-value=1.8e-12  Score=103.17  Aligned_cols=110  Identities=18%  Similarity=0.288  Sum_probs=92.2

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866          248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  327 (381)
Q Consensus       248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m  327 (381)
                      +++++.++.++.++++.|.+.+.+.+||+|+ |+++|+++..|+......+...    .+.++.+             +|
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~~----~~~~i~~-------------~~   63 (111)
T cd04589           2 PPLIVDASTSIRDAARLMREHGADALLVRDG-DPRLGIVTRTDLLDAVLLDGLP----SSTPVGE-------------IA   63 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEecC-CeEEEEEEHHHHHHHHHcCCCC----CCCCHHH-------------Hh
Confidence            4567899999999999999999999999997 8999999999998755422111    1245555             45


Q ss_pred             CCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866          328 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  377 (381)
Q Consensus       328 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~  377 (381)
                      ..++.++++++++.++++.|.+++.+++||+| + ++++|+||..|++++
T Consensus        64 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~G~it~~dl~~~  111 (111)
T cd04589          64 TFPLITVDPDDFLFNALLLMTRHRIHRVVVRE-G-GEVVGVLEQTDLLSF  111 (111)
T ss_pred             CCCcEEECCCCcHHHHHHHHHHhCccEEEEee-C-CEEEEEEEhHHhhcC
Confidence            55788999999999999999999999999999 3 899999999999864

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=99.47  E-value=3.2e-12  Score=123.10  Aligned_cols=195  Identities=17%  Similarity=0.177  Sum_probs=147.1

Q ss_pred             EEEEcCCCCHHHHHHHHHHcCCCeeecccCCCCcEEEEeehHHHHHHHHHhccCCCCCChhHHhhccHHHHHHHHHhhhc
Q 016866           65 VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNL  144 (381)
Q Consensus        65 vi~ld~~~~v~~A~~~l~~~~i~~~pV~d~~~~~~vGilt~~D~~~il~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~  144 (381)
                      .+.+.+..++.+|...|.++++.++||.|.+.+..++++|..-+++.+.......   ....+...++..+         
T Consensus       164 ~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~---~~~~~l~~s~~dl---------  231 (381)
T KOG1764|consen  164 FVSISPESSLLDAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLL---PLPSLLSKSLSDL---------  231 (381)
T ss_pred             ceeecCcHHHHHHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhccc---ccHHHhhCCHHHh---------
Confidence            4999999999999999999999999999977789999999999988876554321   1122222222221         


Q ss_pred             cccCCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCcc
Q 016866          145 KRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPI  224 (381)
Q Consensus       145 ~~~~~~~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~  224 (381)
                           +.  .....+..+..++++.+|++.|.+++++.+||++.   .|   ..+|..+..|+........-      ..
T Consensus       232 -----~i--g~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~---~g---~~v~~~s~~Dv~~l~~~~~~------~~  292 (381)
T KOG1764|consen  232 -----GI--GTWSNIASISEDTPVIEALKIMSERRISALPVVDE---NG---KKVGNYSRFDVIHLAREGTY------NN  292 (381)
T ss_pred             -----Cc--chhhhheeecCCCcHHHHHHHHHhcCcCcceEEcC---CC---ceecceehhhhhhhhhcCcc------Cc
Confidence                 01  12347899999999999999999999999999976   56   67999999999775543221      11


Q ss_pred             ccCc-cccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHh
Q 016866          225 LQQP-VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  296 (381)
Q Consensus       225 ~~~~-i~~l~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~  296 (381)
                      +... ++.     +.. ....-..+++++.++.++.+++..|..++++++.|||++|.++|++|.+|++..+.
T Consensus       293 ~~~~~l~~-----~~~-~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~  359 (381)
T KOG1764|consen  293 LDLSCLSE-----ALS-HRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLV  359 (381)
T ss_pred             cchhHHHH-----Hhh-hcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHH
Confidence            1111 111     110 00111235899999999999999999999999999999999999999999999665

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.47  E-value=1.9e-12  Score=102.78  Aligned_cols=109  Identities=22%  Similarity=0.306  Sum_probs=92.9

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866          248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  327 (381)
Q Consensus       248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m  327 (381)
                      ++.++.++.++.++++.|.+.+.+.+||+|+ |+++|+++..|+.+....+..     .+.++.+             +|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~~l~~~~~~~~~-----~~~~v~~-------------~~   62 (111)
T cd04611           2 QILTCPPDTSLAEAASRMRERRISSIVVVDD-GRPLGIVTERDILRLLASGPD-----LQTPVGE-------------VM   62 (111)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEeHHHHHHHHhcCCC-----CCcCHHH-------------hc
Confidence            4668899999999999999999999999986 999999999999986543221     1345665             55


Q ss_pred             CCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 016866          328 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  376 (381)
Q Consensus       328 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~  376 (381)
                      ..++.++.+++++.++++.|.+.+.+.+||+|+ +|+++|+||.+|+++
T Consensus        63 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~-~~~~~Gvi~~~di~~  110 (111)
T cd04611          63 SSPLLTVPADTSLYDARQLMREHGIRHLVVVDD-DGELLGLLSQTDLLQ  110 (111)
T ss_pred             CCCceEECCCCCHHHHHHHHHHcCCeEEEEECC-CCcEEEEEEhHHhhc
Confidence            567889999999999999999999999999994 689999999999975

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.46  E-value=7.4e-13  Score=135.60  Aligned_cols=123  Identities=18%  Similarity=0.232  Sum_probs=104.0

Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCC
Q 016866          240 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  319 (381)
Q Consensus       240 ~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~  319 (381)
                      +++++|.+++.++++++++.++.+.|.+++.+.+||+|++|+++|+++.+|+.+.......    ..+.++.+       
T Consensus       448 ~V~dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~~~----~~~~~v~d-------  516 (574)
T PRK01862        448 QMRELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDKRD----TTDKTAAD-------  516 (574)
T ss_pred             cHHHHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhcccc----cccchHHH-------
Confidence            5678899999999999999999999999999999999999999999999999874432111    01234555       


Q ss_pred             CCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCC-CeEEEEEehHHHHHHhh
Q 016866          320 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGS-KRVEGIISLSDVFRFLL  379 (381)
Q Consensus       320 ~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~-~~liGiIs~~DIl~~l~  379 (381)
                            +|.+++.++++++++.++++.|.+++.+++||+|+++ ++++|+||++|+++++.
T Consensus       517 ------im~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~  571 (574)
T PRK01862        517 ------YAHTPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYR  571 (574)
T ss_pred             ------hccCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHH
Confidence                  6667889999999999999999999999999999532 58999999999999875

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.46  E-value=1.4e-12  Score=104.57  Aligned_cols=111  Identities=17%  Similarity=0.225  Sum_probs=92.2

Q ss_pred             ceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccccccccccc
Q 016866          159 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWV  238 (381)
Q Consensus       159 ~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~~  238 (381)
                      +.++.+++++.+|++.|.+++...+||+|+   +|   +++|+++..++.+++......      ...            
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~---~g---~~~G~vt~~dl~~~~~~~~~~------~~~------------   58 (114)
T cd04619           3 LAKIDVNATLQRAAKILGEPGIDLVVVCDP---HG---KLAGVLTKTDVVRQMGRCGGP------GCT------------   58 (114)
T ss_pred             eEEECCCCcHHHHHHHHHhcCCCEEEEECC---CC---CEEEEEehHHHHHHHhhcCCC------ccc------------
Confidence            567889999999999999999999999976   56   899999999998855321100      011            


Q ss_pred             cccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866          239 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  293 (381)
Q Consensus       239 ~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  293 (381)
                      ..+.++|..++.++.+++++.++++.|.+++...+||+|++|+++|+++.+|+++
T Consensus        59 ~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~  113 (114)
T cd04619          59 APVENVMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK  113 (114)
T ss_pred             CCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence            2334557778999999999999999999999999999998899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.46  E-value=2.5e-12  Score=102.35  Aligned_cols=111  Identities=15%  Similarity=0.292  Sum_probs=90.3

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866          248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  327 (381)
Q Consensus       248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m  327 (381)
                      .+.++.+++++.++++.|.+++.+.++|.+ +|+++|+++.+|+.+.......   .+.+.++.+             +|
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~~---~~~~~~v~~-------------~~   64 (112)
T cd04625           2 TIYTVAPETLLSEAVATMAEQDLGSLVVME-RGELVGLLTFREVLQAMAQHGA---GVLDTTVRA-------------IM   64 (112)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeEEEee-CCEEEEEEEHHHHHHHHHhcCC---chhcCCHHH-------------Hh
Confidence            456789999999999999888888887776 5999999999999875542111   011245665             45


Q ss_pred             CCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866          328 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  377 (381)
Q Consensus       328 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~  377 (381)
                      ..++.++.+++++.++++.|.+++..++||+| + |+++|+||.+|++++
T Consensus        65 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~-~~~~Gvvt~~dl~~~  112 (112)
T cd04625          65 NPEPIVASPDDSIDEVRRLMVERHLRYLPVLD-G-GTLLGVISFHDVAKA  112 (112)
T ss_pred             CCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE-C-CEEEEEEEHHHhhcC
Confidence            55788999999999999999999999999999 3 899999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=99.45  E-value=1e-12  Score=104.26  Aligned_cols=103  Identities=21%  Similarity=0.307  Sum_probs=87.2

Q ss_pred             ecCCCCHHHHHHHHHhCC-----CcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCccc
Q 016866          252 LRPTASLGSALALLVQAD-----VSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF  326 (381)
Q Consensus       252 v~~~~~l~~a~~~m~~~~-----~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~  326 (381)
                      +.+++++.++++.|.+++     +..+||+|++|+++|+++.+|+.+..       .   +.++.+             +
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~~-------~---~~~v~~-------------~   58 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLAD-------P---DTPVSD-------------I   58 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcCC-------C---cchHHH-------------H
Confidence            578899999999998877     47899999889999999999987520       0   245555             4


Q ss_pred             CCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 016866          327 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  378 (381)
Q Consensus       327 m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l  378 (381)
                      |..++.++.+++++.++++.|..++.+.+||+|+ +++++|+||..|+++++
T Consensus        59 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~dll~~~  109 (109)
T cd04606          59 MDTDVISVSADDDQEEVARLFEKYDLLALPVVDE-EGRLVGIITVDDVIDVI  109 (109)
T ss_pred             hCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECC-CCcEEEEEEhHHhhhhC
Confidence            4457889999999999999999999999999994 68999999999999864

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.44  E-value=1.7e-12  Score=105.33  Aligned_cols=122  Identities=19%  Similarity=0.358  Sum_probs=96.4

Q ss_pred             CCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccccccccc
Q 016866          157 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  236 (381)
Q Consensus       157 ~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~  236 (381)
                      ++++++.+++++.++++.|.+++++++||+++   +|   +++|+++..++++++.......  ....+.       ...
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~Giv~~~~l~~~~~~~~~~~--~~~~~~-------~~~   66 (124)
T cd04600           2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDG---DR---RLVGIVTQRDLLRHARPDGRRP--LRGRLR-------GRD   66 (124)
T ss_pred             CCcEEeCCCCCHHHHHHHHHHcCCceeeEECC---CC---CEEEEEEHHHHHhhhcccccch--hhhhhh-------ccc
Confidence            46789999999999999999999999999975   46   8999999999988654321100  000000       111


Q ss_pred             cccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866          237 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  293 (381)
Q Consensus       237 ~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  293 (381)
                      ....++++|..++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+++
T Consensus        67 ~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~  123 (124)
T cd04600          67 KPETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA  123 (124)
T ss_pred             ccccHHHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence            122455668888999999999999999999999999999998999999999999875

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.44  E-value=1.8e-12  Score=104.97  Aligned_cols=115  Identities=14%  Similarity=0.194  Sum_probs=92.2

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhc-cc-----ccccccHHHHHhcCCCCC
Q 016866          248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYA-QI-----HLDEMNIHQALQLGQDAN  321 (381)
Q Consensus       248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~-~~-----~~~~~~v~~~l~~~~~~~  321 (381)
                      ++.++.+++++.++++.|.+.+++++||+|+ |+++|+++..|+.+........ ..     .....++.+         
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------   71 (122)
T cd04637           2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED-NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQ---------   71 (122)
T ss_pred             CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHH---------
Confidence            4678999999999999999999999999996 9999999999998754321100 00     000122333         


Q ss_pred             CCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866          322 PSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  377 (381)
Q Consensus       322 ~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~  377 (381)
                          +|..++.++.+++++.++++.|.+++..++||+|+ +++++|++|+.|++++
T Consensus        72 ----~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~-~~~~~Gvit~~dll~~  122 (122)
T cd04637          72 ----IMTRDPITVSPDTPVDEASKLLLENSISCLPVVDE-NGQLIGIITWKDLLKY  122 (122)
T ss_pred             ----hhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECC-CCCEEEEEEHHHhhhC
Confidence                55667899999999999999999999999999994 6899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.44  E-value=3.2e-12  Score=101.89  Aligned_cols=110  Identities=23%  Similarity=0.389  Sum_probs=91.1

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH-HHhhhhhcccccccccHHHHHhcCCCCCCCccc
Q 016866          248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA-LAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF  326 (381)
Q Consensus       248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~-l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~  326 (381)
                      ++.++.+++++.++++.|.+.+.+++||+|+ |+++|+++..|++. ....+..    ....++.+             +
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~i~~~~l~~~~~~~~~~----~~~~~~~~-------------~   63 (113)
T cd04622           2 DVVTVSPDDTIREAARLMREHDVGALPVCEN-DRLVGIVTDRDIVVRAVAEGRD----PDTTTVGD-------------V   63 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEhHHHHHHHhhccCC----cccCCHHH-------------h
Confidence            4678999999999999999999999999997 99999999999873 3322111    11123554             5


Q ss_pred             CCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 016866          327 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  376 (381)
Q Consensus       327 m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~  376 (381)
                      |...+.++.+++++.++++.|.+.+.+++||+|+ +|+++|+||..|+++
T Consensus        64 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~it~~di~~  112 (113)
T cd04622          64 MTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDD-DGRLVGIVSLGDLAR  112 (113)
T ss_pred             ccCCccEECCCCCHHHHHHHHHHcCCCeeeEECC-CCcEEEEEEHHHhhc
Confidence            6667889999999999999999999999999994 689999999999976

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.43  E-value=1.8e-12  Score=104.62  Aligned_cols=111  Identities=19%  Similarity=0.309  Sum_probs=90.9

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866          158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  237 (381)
Q Consensus       158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~  237 (381)
                      +++++.+++++.+|++.|.+++...+||+|+   +|   +++|+++..++++...... .      ...           
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~---~~---~~~Givt~~dl~~~~~~~~-~------~~~-----------   57 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDE---DG---DLVGVVSRKDLLKASIGGA-D------LQK-----------   57 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CC---CEEEEEEHHHHHHHHHcCC-C------ccC-----------
Confidence            5788999999999999999999999999975   56   7999999999988653211 0      001           


Q ss_pred             ccccccccCC--CceEecCCCCHHHHHHHHHhCCCcEEEEEcCC---CcEEEEEeHHHHHH
Q 016866          238 VPRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDN---DSLLDIYSRSDITA  293 (381)
Q Consensus       238 ~~~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~---g~lvGiis~~Di~~  293 (381)
                       ..++++|..  ++.++.+++++.+++++|.+++++.+||+|++   |+++|++|.+|+.+
T Consensus        58 -~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~  117 (118)
T cd04617          58 -VPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK  117 (118)
T ss_pred             -CCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence             123334653  68899999999999999999999999999976   69999999999865

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.43  E-value=8.8e-12  Score=123.38  Aligned_cols=206  Identities=12%  Similarity=0.135  Sum_probs=140.7

Q ss_pred             CeeecccCCCCcEEEEeehHHHHHHHHHhccCC---CCCChhHHhhccHHHHHHHHHhhhccccCCCCCCCCCCCceEeC
Q 016866           87 PMVPLWDDFKGRFVGVLSALDFILILRELGTNG---SNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAG  163 (381)
Q Consensus        87 ~~~pV~d~~~~~~vGilt~~D~~~il~~~~~~~---~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~i~v~  163 (381)
                      ..+|++-+    -..-+|..++...+...+..+   .++.        +..+.+......       +...|..+++++.
T Consensus        43 l~~Pi~sa----~Mdtvt~~~MAiaLAr~GGiGvih~nl~--------~~~q~~~l~~VK-------v~~iMi~~pvtv~  103 (479)
T PRK07807         43 TTIPLVVA----NMTAVAGRRMAETVARRGGLVVLPQDIP--------IDVVAEVVAWVK-------SRDLVFDTPVTLS  103 (479)
T ss_pred             cccceeec----CCcchhHHHHHHHHHHCCCceEeeCCCC--------HHHHHHHHhhcc-------cccccccCCeEEC
Confidence            34677754    335567777777666554211   1222        222222222221       1236888999999


Q ss_pred             CCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccccccccc
Q 016866          164 PYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGE  243 (381)
Q Consensus       164 ~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~~~~v~~  243 (381)
                      +++++.+|++.|.+++++.+||+|+   ++   +++|++|..|+...        .     ...            .+.+
T Consensus       104 ~d~tv~eA~~~m~~~~~s~l~VVD~---~g---klvGIVT~rDL~~~--------~-----~~~------------~V~d  152 (479)
T PRK07807        104 PDDTVGDALALLPKRAHGAVVVVDE---EG---RPVGVVTEADCAGV--------D-----RFT------------QVRD  152 (479)
T ss_pred             CCCCHHHHHHHHHhcCCceEEEECC---CC---eEEEEEeHHHHhcC--------c-----cCC------------CHHH
Confidence            9999999999999999999999975   56   89999999998431        0     011            2445


Q ss_pred             ccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCC
Q 016866          244 ANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPS  323 (381)
Q Consensus       244 ~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~  323 (381)
                      +|..+++++.+++++.+|+++|.++++..+||+|++|+++|+||.+||++........... ....+..           
T Consensus       153 iMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~~~~~~~-g~l~V~a-----------  220 (479)
T PRK07807        153 VMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYTPAVDAA-GRLRVAA-----------  220 (479)
T ss_pred             hccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCCchhhhh-hccchHh-----------
Confidence            5888999999999999999999999999999999889999999999999965532110000 0112222           


Q ss_pred             cccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCe
Q 016866          324 LGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKR  364 (381)
Q Consensus       324 ~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~  364 (381)
                             ...+  .....+.++.|.+.+++. .++|..+|.
T Consensus       221 -------av~~--~~~~~~~a~~Lv~aGvd~-i~~D~a~~~  251 (479)
T PRK07807        221 -------AVGI--NGDVAAKARALLEAGVDV-LVVDTAHGH  251 (479)
T ss_pred             -------hhcc--ChhHHHHHHHHHHhCCCE-EEEeccCCc
Confidence                   1112  234667888888899887 577754454

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.43  E-value=3.4e-12  Score=102.22  Aligned_cols=106  Identities=22%  Similarity=0.324  Sum_probs=88.5

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCcEEEEEcC---CCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCc
Q 016866          248 PFAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSL  324 (381)
Q Consensus       248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~  324 (381)
                      ++.++.+++++.++++.|.+.+.+.+||+|+   +|+++|+++..|+..... .        ..++.+            
T Consensus         3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~-~--------~~~v~~------------   61 (114)
T cd04602           3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTD-S--------ETPLSE------------   61 (114)
T ss_pred             CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhc-c--------CCCHHH------------
Confidence            4678899999999999999999999999997   799999999999875321 0        134555            


Q ss_pred             ccCCCcceEEcC--CCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 016866          325 GFNGQRCQMCLR--SDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  376 (381)
Q Consensus       325 ~~m~~~~~~v~~--~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~  376 (381)
                       +|..++.++..  ++++.++++.|.+++.+++||+| ++|+++|+||..|+++
T Consensus        62 -~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~-~~~~~~Gvit~~di~~  113 (114)
T cd04602          62 -VMTPREVLVVAPTGITLEEANEILRESKKGKLPIVN-DDGELVALVTRSDLKK  113 (114)
T ss_pred             -hcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEEC-CCCeEEEEEEHHHhhc
Confidence             45455667755  99999999999999999999999 4689999999999975

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.43  E-value=5.6e-12  Score=100.36  Aligned_cols=110  Identities=15%  Similarity=0.314  Sum_probs=90.8

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866          248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  327 (381)
Q Consensus       248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m  327 (381)
                      ++.++.++.++.++++.|.+.+.+.+||+|+ ++++|+++..|+.+....+....   .+.++.+             +|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~~~---~~~~~~~-------------~~   64 (112)
T cd04802           2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN-EKPVGIITERDLVKKVVSRNLKP---REVPVGE-------------VM   64 (112)
T ss_pred             CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHHHHhhccCCc---ccCCHHH-------------hc
Confidence            4677899999999999999999999999995 59999999999998543221101   1245555             55


Q ss_pred             CCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 016866          328 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  376 (381)
Q Consensus       328 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~  376 (381)
                      ..++.++.+++++.++++.|.+.+.+.+||+|+  ++++|+||..|+++
T Consensus        65 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~di~~  111 (112)
T cd04802          65 STPLITIDPNASLNEAAKLMAKHGIKRLPVVDD--DELVGIVTTTDIVM  111 (112)
T ss_pred             CCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeC--CEEEEEEEhhhhhc
Confidence            567889999999999999999999999999994  48999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.43  E-value=2.2e-12  Score=102.24  Aligned_cols=106  Identities=20%  Similarity=0.409  Sum_probs=89.1

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866          248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  327 (381)
Q Consensus       248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m  327 (381)
                      ++.++.++.++.++++.|.+.+.+.+||+|++|+++|+++.+++.....      .   +.++.+             +|
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~------~---~~~v~~-------------~~   60 (110)
T cd04601           3 DPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFETD------L---DKPVSE-------------VM   60 (110)
T ss_pred             CCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeeccc------C---CCCHHH-------------hc
Confidence            5678899999999999999999999999998899999999999864211      0   245555             44


Q ss_pred             CCcceEEcC-CCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 016866          328 GQRCQMCLR-SDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  376 (381)
Q Consensus       328 ~~~~~~v~~-~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~  376 (381)
                      ..++.++.+ ++++.++++.|.+.+.+++||+| ++|+++|+||.+|+++
T Consensus        61 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvi~~~dil~  109 (110)
T cd04601          61 TPENLLTTVEGTSLEEALELLHEHKIEKLPVVD-DEGKLKGLITVKDIEK  109 (110)
T ss_pred             ccCceEEecCCCCHHHHHHHHHHhCCCeeeEEc-CCCCEEEEEEhhhhhc
Confidence            445666666 99999999999999999999999 4789999999999985

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.42  E-value=3.7e-12  Score=100.84  Aligned_cols=109  Identities=19%  Similarity=0.366  Sum_probs=88.6

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866          248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  327 (381)
Q Consensus       248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m  327 (381)
                      ++.++.+++++.++++.|.+++++.+||+|+ |+++|+++..|+.+........ .   +.++.+             +|
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~~-~---~~~~~~-------------~~   63 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALIEGKAK-F---SLPVRE-------------VM   63 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHHhccccc-c---CcCHHH-------------Hh
Confidence            4678899999999999999999999999997 9999999999999865432111 0   234555             45


Q ss_pred             CCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866          328 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  377 (381)
Q Consensus       328 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~  377 (381)
                      ..++.++++++++.++++.|.+ .. .+||++ ++|+++|+||.+||++|
T Consensus        64 ~~~~~~v~~~~~l~~~~~~~~~-~~-~~~vv~-~~~~~~Gvvt~~di~~~  110 (110)
T cd04609          64 GEPLPTVDPDAPIEELSELLDR-GN-VAVVVD-EGGKFVGIITRADLLKY  110 (110)
T ss_pred             cCCCceeCCCCcHHHHHHHHHh-CC-ceeEEe-cCCeEEEEEeHHHhhcC
Confidence            5578899999999999999988 33 478888 46999999999999875

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.42  E-value=2.7e-12  Score=125.48  Aligned_cols=118  Identities=12%  Similarity=0.244  Sum_probs=101.0

Q ss_pred             ccccccCC--CceEecCCCCHHHHHHHHHhCCCcEEEEEcCC-CcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhc
Q 016866          240 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  316 (381)
Q Consensus       240 ~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~  316 (381)
                      +++++|.+  ++.+++.++++.++++.+.+++++++||++++ ++++|+++.+|++.....+        ...+.+    
T Consensus       192 ~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~~--------~~~l~~----  259 (408)
T TIGR03520       192 DTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNKK--------NFDWQS----  259 (408)
T ss_pred             EeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhccC--------CCCHHH----
Confidence            56777986  78999999999999999999999999999864 6999999999998643321        123444    


Q ss_pred             CCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866          317 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  380 (381)
Q Consensus       317 ~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~  380 (381)
                               +|. ++.++++++++.++++.|.+++.|..+|+| +.|.++|+||..||+..++|
T Consensus       260 ---------~~~-~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvD-E~G~~~GiVT~eDileeivg  312 (408)
T TIGR03520       260 ---------LLR-EPYFVPENKKLDDLLRDFQEKKNHLAIVVD-EYGGTSGLVTLEDIIEEIVG  312 (408)
T ss_pred             ---------HcC-CCeEeCCCCcHHHHHHHHHhcCceEEEEEc-CCCCEEEEEEHHHHHHHHhC
Confidence                     332 578999999999999999999999999999 57999999999999999976

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.42  E-value=4.7e-12  Score=101.34  Aligned_cols=111  Identities=16%  Similarity=0.273  Sum_probs=92.0

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCC-CCccceEEEeehhhHHHHHhhhcccCCCCCccccCccccccccc
Q 016866          158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPA-GSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  236 (381)
Q Consensus       158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~-g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~  236 (381)
                      +++++.+++++.+|++.|.+++.+.+||+++   + |   +++|+++..|+++++......      ....         
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~~---~~~G~v~~~dl~~~~~~~~~~------~~~~---------   60 (114)
T cd04630           2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKR---RES---DAYGIVTMRDILKKVVAEGRD------PDRV---------   60 (114)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCEEEEEEC---CCC---cEEEEEehHHHHHHHHhCCCC------CCcc---------
Confidence            5688999999999999999999999999975   4 6   799999999999866432110      0011         


Q ss_pred             cccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866          237 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  293 (381)
Q Consensus       237 ~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  293 (381)
                         .+.++|..++.++.+++++.++++.|.+.+...+||+|+ |+++|+++..|+++
T Consensus        61 ---~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~  113 (114)
T cd04630          61 ---NVYEIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVEN-NELIGIISLTDIFL  113 (114)
T ss_pred             ---CHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence               234457778999999999999999999999999999997 99999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.42  E-value=4.4e-12  Score=99.62  Aligned_cols=103  Identities=16%  Similarity=0.276  Sum_probs=88.9

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866          248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  327 (381)
Q Consensus       248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m  327 (381)
                      ++.++.+++++.++++.|.+++.+.+||+| +|+++|+++..|+.+...          +.++.+             +|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~~~~~Giv~~~~l~~~~~----------~~~~~~-------------~~   57 (105)
T cd04599           2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-DGKLVGIITSRDVRRAHP----------NRLVAD-------------AM   57 (105)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEehHHhhcccc----------cCCHHH-------------Hc
Confidence            466789999999999999999999999998 699999999999986321          134555             45


Q ss_pred             CCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 016866          328 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  376 (381)
Q Consensus       328 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~  376 (381)
                      ..++.++.+++++.++++.|.+++..++||+| + |+++|+||..|++.
T Consensus        58 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~G~it~~~l~~  104 (105)
T cd04599          58 TREVVTISPEASLLEAKRLMEEKKIERLPVLR-E-RKLVGIITKGTIAL  104 (105)
T ss_pred             cCCCEEECCCCCHHHHHHHHHHcCCCEeeEEE-C-CEEEEEEEHHHhcc
Confidence            55788999999999999999999999999999 4 89999999999873

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.42  E-value=4.8e-12  Score=102.15  Aligned_cols=114  Identities=20%  Similarity=0.337  Sum_probs=92.6

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcc-----cccccccHHHHHhcCCCCCC
Q 016866          248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQ-----IHLDEMNIHQALQLGQDANP  322 (381)
Q Consensus       248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~-----~~~~~~~v~~~l~~~~~~~~  322 (381)
                      ++.++.+++++.+|.+.|.+.+.+++||+|++|+++|+++..|+.+.........     ......++.+          
T Consensus         2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~----------   71 (121)
T cd04584           2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKE----------   71 (121)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHH----------
Confidence            4678899999999999999999999999998899999999999987543211000     0011234444          


Q ss_pred             CcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 016866          323 SLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  376 (381)
Q Consensus       323 ~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~  376 (381)
                         +|..++.++.+++++.++++.|.+.+.+.+||+| + ++++|++|..||++
T Consensus        72 ---~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~~Gvv~~~di~~  120 (121)
T cd04584          72 ---IMTKDVITVHPLDTVEEAALLMREHRIGCLPVVE-D-GRLVGIITETDLLR  120 (121)
T ss_pred             ---HhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEee-C-CEEEEEEEHHHhhc
Confidence               4556788999999999999999999999999999 4 89999999999986

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=99.41  E-value=4.2e-12  Score=100.14  Aligned_cols=105  Identities=16%  Similarity=0.344  Sum_probs=90.1

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866          248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  327 (381)
Q Consensus       248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m  327 (381)
                      ++.++..+.++.++++.|.+.+.+.+||+|+ ++++|+++..|++...      .    +.++.+             +|
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~g~v~~~~l~~~~------~----~~~~~~-------------~~   58 (107)
T cd04610           3 DVITVSPDNTVKDVIKLIKETGHDGFPVVDN-GKVVGIVSARDLLGKD------P----DETVEE-------------IM   58 (107)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhccC------c----cccHHH-------------hC
Confidence            5678999999999999999888889999996 9999999999997521      0    234555             55


Q ss_pred             CCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866          328 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  377 (381)
Q Consensus       328 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~  377 (381)
                      ..++.++.+++++.++++.|.+++.+++||+|+ +|+++|+|+..|++++
T Consensus        59 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~g~~~Gvi~~~di~~~  107 (107)
T cd04610          59 SKDLVVAVPEMDIMDAARVMFRTGISKLPVVDE-NNNLVGIITNTDVIRS  107 (107)
T ss_pred             CCCCeEECCCCCHHHHHHHHHHhCCCeEeEECC-CCeEEEEEEHHHhhcC
Confidence            567889999999999999999999999999994 6899999999999863

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=99.41  E-value=4.6e-12  Score=99.76  Aligned_cols=100  Identities=15%  Similarity=0.256  Sum_probs=86.4

Q ss_pred             eEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccCCC
Q 016866          250 AMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQ  329 (381)
Q Consensus       250 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m~~  329 (381)
                      +++.++.++.++++.|.+.+.+.+||+|+ |+++|+++..|+.+...           .++.+             +|..
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~-----------~~~~~-------------~~~~   58 (104)
T cd04594           4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-NKFLGAVYLKDIENATY-----------GDVVD-------------YIVR   58 (104)
T ss_pred             eEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHHhhhcc-----------cchhh-------------hhhc
Confidence            46899999999999999999999999997 99999999999976311           12333             4445


Q ss_pred             cceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 016866          330 RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  376 (381)
Q Consensus       330 ~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~  376 (381)
                      ++.++.+++++.++++.|.+++.+++||+| + |+++|+||..|+++
T Consensus        59 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~-~~~iGvit~~dl~~  103 (104)
T cd04594          59 GIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-D-GKFKGIVTLDSILD  103 (104)
T ss_pred             CCcEEcCCCCHHHHHHHHHHcCcceEEEEE-C-CEEEEEEEHHHhhc
Confidence            688999999999999999999999999998 3 89999999999975

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.41  E-value=1.7e-11  Score=121.24  Aligned_cols=205  Identities=15%  Similarity=0.143  Sum_probs=137.7

Q ss_pred             eeecccCCCCcEEEEeehHHHHHHHHHhccCC---CCCChhHHhhccHHHHHHHHHhhhccccCCCCCCCCCCCceEeCC
Q 016866           88 MVPLWDDFKGRFVGVLSALDFILILRELGTNG---SNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGP  164 (381)
Q Consensus        88 ~~pV~d~~~~~~vGilt~~D~~~il~~~~~~~---~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~  164 (381)
                      .+|++.+    ..--+|.....-.+...+..+   .++        ++..|.+......       +...|..+++++.+
T Consensus        43 ~~P~vsa----~mdtvTe~~MAi~~A~~GGigvIh~n~--------~i~~qae~v~~VK-------v~eim~~~pvtv~p  103 (475)
T TIGR01303        43 TIPLVVA----NMTAVAGRRMAETVARRGGIVILPQDL--------PIPAVKQTVAFVK-------SRDLVLDTPITLAP  103 (475)
T ss_pred             ccceeec----cchhhHHHHHHHHHHHCCCEEEEeCCC--------CHHHHHHHHhhcc-------hhhccccCCeEECC
Confidence            4677754    233456666665555444311   122        4444544443322       11256788999999


Q ss_pred             CCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccccccccccccccccc
Q 016866          165 YDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEA  244 (381)
Q Consensus       165 ~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~~~~v~~~  244 (381)
                      ++++.+|++.|.+++++.+||+|+    +   +++|++|.+|+...            . ...            .+.++
T Consensus       104 ~~tI~eA~~lm~~~~~~~~vVvD~----g---klvGIVT~rDL~~~------------~-~~~------------~V~dI  151 (475)
T TIGR01303       104 HDTVSDAMALIHKRAHGAAVVILE----D---RPVGLVTDSDLLGV------------D-RFT------------QVRDI  151 (475)
T ss_pred             CCCHHHHHHHHHhcCCeEEEEEEC----C---EEEEEEEHHHhhcC------------C-CCC------------CHHHH
Confidence            999999999999999999999863    5   79999999998420            0 011            24455


Q ss_pred             cCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCc
Q 016866          245 NGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSL  324 (381)
Q Consensus       245 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~  324 (381)
                      |..+++++.+++++.+|+++|.+++++.+||+|++|+++|+||.+||++........... ....+..            
T Consensus       152 Mt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~~~~~d~~-grl~Vga------------  218 (475)
T TIGR01303       152 MSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIYTPATDAA-GRLRIGA------------  218 (475)
T ss_pred             ccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhCCchhhhc-cCceehh------------
Confidence            888999999999999999999999999999999899999999999999865532110000 0111111            


Q ss_pred             ccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeE
Q 016866          325 GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRV  365 (381)
Q Consensus       325 ~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~l  365 (381)
                              -+.......+-++.|.+.+++.+ ++|..+|+.
T Consensus       219 --------av~~~~~~~~ra~~Lv~aGVd~i-~~D~a~g~~  250 (475)
T TIGR01303       219 --------AVGINGDVGGKAKALLDAGVDVL-VIDTAHGHQ  250 (475)
T ss_pred             --------eeeeCccHHHHHHHHHHhCCCEE-EEeCCCCCc
Confidence                    12233455677777888888764 666545554

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.41  E-value=4e-12  Score=98.85  Aligned_cols=94  Identities=13%  Similarity=0.238  Sum_probs=84.2

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866          158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  237 (381)
Q Consensus       158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~  237 (381)
                      +++++.+++++.+|++.|.+++++.+||+|+   +|   +++|+++..|+.+..                          
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~---~~---~~~Giv~~~dl~~~~--------------------------   49 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVLDD---DG---KLSGIITERDLIAKS--------------------------   49 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEECC---CC---CEEEEEEHHHHhcCC--------------------------
Confidence            5678999999999999999999999999975   56   799999999997611                          


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866          238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  293 (381)
Q Consensus       238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  293 (381)
                                .+.++.+++++.++++.|.+++.+.+||+|++|+++|++|.+|+++
T Consensus        50 ----------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~   95 (96)
T cd04614          50 ----------EVVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK   95 (96)
T ss_pred             ----------CcEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence                      1568899999999999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=99.41  E-value=1.3e-12  Score=119.60  Aligned_cols=115  Identities=17%  Similarity=0.260  Sum_probs=103.3

Q ss_pred             ccccccC--CCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcC
Q 016866          240 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLG  317 (381)
Q Consensus       240 ~v~~~~~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~  317 (381)
                      .|.++|.  .+...+.+++++.+..++-.+.+.+++||+|...+++|++|.+|+.....          +.++..     
T Consensus       189 ~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~~~----------~t~ieK-----  253 (432)
T COG4109         189 TVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDKKP----------STTIEK-----  253 (432)
T ss_pred             eHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhhcCCC----------CccHHH-----
Confidence            5567777  57788999999999999999999999999999999999999999987322          345555     


Q ss_pred             CCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 016866          318 QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  378 (381)
Q Consensus       318 ~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l  378 (381)
                              +|+++|+++.+.+|+..+.++|.-.++.-+||+| ++.+++|+||++|+++.+
T Consensus       254 --------VMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~-~n~~llGiitR~dvlk~l  305 (432)
T COG4109         254 --------VMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVD-SNNTLLGIITRQDVLKSL  305 (432)
T ss_pred             --------HhccCCeeecccchHHHHHHHHHhccceeeeEEc-CCceEEEEEEHHHHHHHH
Confidence                    8899999999999999999999999999999999 589999999999999986

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.40  E-value=9.1e-12  Score=98.24  Aligned_cols=112  Identities=22%  Similarity=0.437  Sum_probs=92.8

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866          248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  327 (381)
Q Consensus       248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m  327 (381)
                      ++.++.++.++.++.+.|.+.+.+.+||+|++++++|+++..|+............    ..+.+             +|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~~~----~~~~~-------------~~   64 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLDPL----VTVGD-------------VM   64 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhccCCcc----ccHHH-------------Hh
Confidence            46678999999999999999999999999988999999999999986653221110    11333             44


Q ss_pred             CCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866          328 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  377 (381)
Q Consensus       328 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~  377 (381)
                      ..++.++.+++++.++++.|...+.+.+||+|+ +++++|+++..|++++
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~i~~~dl~~~  113 (113)
T cd02205          65 TRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDD-EGRLVGIVTRSDILRA  113 (113)
T ss_pred             cCCceecCCCcCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEEHHHhhcC
Confidence            557889999999999999999999999999994 6999999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.40  E-value=5.2e-12  Score=103.06  Aligned_cols=124  Identities=15%  Similarity=0.229  Sum_probs=92.5

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866          158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  237 (381)
Q Consensus       158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~  237 (381)
                      .++++++++++.+|++.|.++++..+||+|+   .|   +++|+++..|++++.........    ....+...+.  ..
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~---~~---~~~Giv~~~dl~~~~~~~~~~~~----~~~~~~~~~~--~~   69 (126)
T cd04642           2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDE---KG---KLIGNISASDLKGLLLSPDDLLL----YRTITFKELS--EK   69 (126)
T ss_pred             CeEEECCCccHHHHHHHHHHhCCCcccEECC---CC---cEEEEEEHHHhhhhhcCcchhhc----ccchhhhhhh--hh
Confidence            4678999999999999999999999999976   46   89999999999886532111000    0000000000  00


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866          238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  293 (381)
Q Consensus       238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  293 (381)
                      .....+.+..++.++.+++++.+|++.|.+++.+.+||+|++|+++|++|..|+++
T Consensus        70 ~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~  125 (126)
T cd04642          70 FTDSDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS  125 (126)
T ss_pred             cccccccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence            01122346678899999999999999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG0517 FOG: CBS domain [General function prediction only]

Probab=99.39  E-value=1.2e-11  Score=99.09  Aligned_cols=111  Identities=24%  Similarity=0.427  Sum_probs=94.1

Q ss_pred             cCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCc
Q 016866          245 NGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSL  324 (381)
Q Consensus       245 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~  324 (381)
                      +.+.+.++.++.++.+|...|.++++..+||++ .++++|++|.+|+.+....+....     .++.+            
T Consensus         5 ~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~-~~~l~Giit~~di~~~~~~~~~~~-----~~v~~------------   66 (117)
T COG0517           5 MTKDVITVKPDTSVRDALLLMSENGVSAVPVVD-DGKLVGIITERDILRALAAGGKRL-----LPVKE------------   66 (117)
T ss_pred             ccCCCEEECCCCcHHHHHHHHHHcCCCEEEEee-CCEEEEEEEHHHHHHHHhccCCcc-----ccHHH------------
Confidence            446789999999999999999999999999997 458999999999999766433211     13444            


Q ss_pred             ccCCCcceEEcCCCCHHHHHHHHHh-CCCCEEEEEeCCCC-eEEEEEehHHHH
Q 016866          325 GFNGQRCQMCLRSDPLHKVMERLAN-PGVRRLVIVEAGSK-RVEGIISLSDVF  375 (381)
Q Consensus       325 ~~m~~~~~~v~~~~tl~~~~~~m~~-~~~~~l~Vvd~~~~-~liGiIs~~DIl  375 (381)
                       +|..++.++.+++++.++++.|.. ++++++||+|+ ++ +++|++|.+|++
T Consensus        67 -v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~-~~~~lvGivt~~di~  117 (117)
T COG0517          67 -VMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDD-DGGKLVGIITLSDIL  117 (117)
T ss_pred             -hccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEEC-CCCeEEEEEEHHHcC
Confidence             676789999999999999999999 79999999994 55 999999999974

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.39  E-value=8.7e-12  Score=98.19  Aligned_cols=104  Identities=13%  Similarity=0.195  Sum_probs=88.6

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866          158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  237 (381)
Q Consensus       158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~  237 (381)
                      +++++.+++++.+|++.|.+++.+.+||+++   +|   +++|+++..|+++...              .+         
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~---~g---~~~Giv~~~dl~~~~~--------------~~---------   52 (106)
T cd04582           2 EPITVRPDDPLSDALGLMDDSDLRALTVVDA---DG---QPLGFVTRREAARASG--------------GC---------   52 (106)
T ss_pred             CCcEecCCCcHHHHHHHHHhcCCCEEEEECC---CC---CEEEEEeHHHHHHhcc--------------cc---------
Confidence            4678899999999999999999999999975   57   8999999999987311              11         


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866          238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  293 (381)
Q Consensus       238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  293 (381)
                         ++++|.+.+..+.+++++.++++.|.+++.+.+||+|++|+++|+++.+|+++
T Consensus        53 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~  105 (106)
T cd04582          53 ---CGDHAEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD  105 (106)
T ss_pred             ---hhhhcccCCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence               22336667788999999999999999999999999998899999999999875

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.39  E-value=6.6e-12  Score=99.75  Aligned_cols=109  Identities=20%  Similarity=0.422  Sum_probs=91.5

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866          158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  237 (381)
Q Consensus       158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~  237 (381)
                      ++.++.+++++.+|++.|.+.+...+||+++   +|   +++|+++..++.+++....         ...+         
T Consensus         2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~---~~---~~~G~v~~~~l~~~~~~~~---------~~~~---------   57 (111)
T cd04639           2 HFETLSPADTLDDAADALLATTQHEFPVVDG---DG---HLVGLLTRDDLIRALAEGG---------PDAP---------   57 (111)
T ss_pred             CceEcCCCCcHHHHHHHHHHcCCCcceEECC---CC---cEEEEeeHHHHHHHHHhcC---------CCCc---------
Confidence            4678899999999999998889999999975   56   8999999999998664321         0112         


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866          238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  293 (381)
Q Consensus       238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  293 (381)
                         +.++|..++.++.+++++.++++.|.+++...+||+|++|+++|++|.+|+..
T Consensus        58 ---v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~  110 (111)
T cd04639          58 ---VRGVMRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE  110 (111)
T ss_pred             ---HHHHhcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence               23446678889999999999999999999999999998899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.39  E-value=1e-11  Score=98.77  Aligned_cols=111  Identities=20%  Similarity=0.364  Sum_probs=92.1

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866          158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  237 (381)
Q Consensus       158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~  237 (381)
                      +++.+.+++++.+|++.|.+++++.+||+++   ++   +++|+++..++++++.......      ..           
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~Giv~~~~l~~~~~~~~~~~------~~-----------   58 (113)
T cd04623           2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDD---GG---RLVGIFSERDIVRKVALRGASA------LD-----------   58 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEECC---CC---CEEEEEehHHHHHHHhhcCCCc------cc-----------
Confidence            5678899999999999999999999999975   46   7999999999998664321100      01           


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866          238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  293 (381)
Q Consensus       238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  293 (381)
                       ..+.++|..++.++.++.++.++++.|.+.+.+.+||+++ |+++|+++.+|+++
T Consensus        59 -~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~  112 (113)
T cd04623          59 -TPVSEIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK  112 (113)
T ss_pred             -cCHHHhcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence             1244557778899999999999999999999999999986 99999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.38  E-value=1.1e-11  Score=98.40  Aligned_cols=108  Identities=21%  Similarity=0.430  Sum_probs=91.7

Q ss_pred             CCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccccccccc
Q 016866          157 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  236 (381)
Q Consensus       157 ~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~  236 (381)
                      ++++++.+++++.+|++.|.+++...+||+++   +|   +++|+++..++++.+....           .+        
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~~~~~-----------~~--------   56 (110)
T cd04605           2 RPVVTISEDASIKEAAKLMIEENINHLPVVDE---DG---RLVGIVTSWDISKAVARDK-----------KS--------   56 (110)
T ss_pred             CCCEEECCCCCHHHHHHHHHhCCCceEEEECC---CC---cEEEEEeHHHHHHHHhhCc-----------cC--------
Confidence            46788999999999999999999999999975   57   8999999999987543210           11        


Q ss_pred             cccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866          237 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  293 (381)
Q Consensus       237 ~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  293 (381)
                          +.++|..++.++.+++++.++++.|.+++...+||++++|+++|+++..|+.+
T Consensus        57 ----~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~  109 (110)
T cd04605          57 ----VEDIMTRNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK  109 (110)
T ss_pred             ----HHHhcCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence                23346668889999999999999999999999999998899999999999865

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.38  E-value=9.7e-12  Score=99.26  Aligned_cols=109  Identities=19%  Similarity=0.312  Sum_probs=90.7

Q ss_pred             ceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccccccccccc
Q 016866          159 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWV  238 (381)
Q Consensus       159 ~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~~  238 (381)
                      .+++.+++++.+|++.|.+++.+.+||+++   +|   +++|+++..|+++.+.....        ...           
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~dl~~~~~~~~~--------~~~-----------   58 (113)
T cd04607           4 QLLVSPDASILDALRKIDKNALRIVLVVDE---NG---RLLGTVTDGDIRRALLKGLS--------LDD-----------   58 (113)
T ss_pred             ceEECCCCCHHHHHHHHHhcCcCEEEEECC---CC---CEEEEEEcHHHHHHHhcCCC--------cCC-----------
Confidence            467899999999999999999999999975   56   89999999999875532110        011           


Q ss_pred             cccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866          239 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  293 (381)
Q Consensus       239 ~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  293 (381)
                       .+.++|..++.++.+++++.++++.|.+++.+.+||+|++|+++|++|.+|++.
T Consensus        59 -~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~  112 (113)
T cd04607          59 -PVSEVMNRNPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLLS  112 (113)
T ss_pred             -CHHHhhcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence             233447778889999999999999999999999999998899999999999863

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.38  E-value=3.6e-12  Score=126.87  Aligned_cols=107  Identities=16%  Similarity=0.190  Sum_probs=92.7

Q ss_pred             ceEecCCCCHHHHHHHHHhCCCcEEEEEcC---CCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcc
Q 016866          249 FAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLG  325 (381)
Q Consensus       249 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~  325 (381)
                      ++++.+++++.+|+++|.+++++.+||+|+   +|+++|++|..|+....  .      ..+.++.+             
T Consensus       107 ~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~--~------~~~~~V~d-------------  165 (502)
T PRK07107        107 DSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISR--M------SLDTKVKD-------------  165 (502)
T ss_pred             CCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccc--c------CCCCCHHH-------------
Confidence            458999999999999999999999999996   58999999999996421  0      11456777             


Q ss_pred             cCCC--cceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866          326 FNGQ--RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  377 (381)
Q Consensus       326 ~m~~--~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~  377 (381)
                      +|+.  +++++.+++++.+|++.|.+++++++|||| ++++++|+||..|+++.
T Consensus       166 IMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD-~~g~LvGIIT~~Dilk~  218 (502)
T PRK07107        166 FMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVD-KNGNLVYLVFRKDYDSH  218 (502)
T ss_pred             HhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEc-CCCeEEEEEEhHHHHhc
Confidence            5654  688999999999999999999999999999 47899999999999885

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=99.38  E-value=4.5e-12  Score=117.56  Aligned_cols=113  Identities=17%  Similarity=0.291  Sum_probs=96.8

Q ss_pred             cccccccCCC-ceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcC
Q 016866          239 PRIGEANGRP-FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLG  317 (381)
Q Consensus       239 ~~v~~~~~~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~  317 (381)
                      .+++++|.++ +.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+.+....+..     .+.++.+     
T Consensus       155 ~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~~~~~-----~~~~v~~-----  224 (268)
T TIGR00393       155 VKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLGGGS-----LKSEVRD-----  224 (268)
T ss_pred             hhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHhcCCc-----ccCcHHH-----
Confidence            3677888888 9999999999999999999999999999989999999999999885432111     1345666     


Q ss_pred             CCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEe
Q 016866          318 QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIIS  370 (381)
Q Consensus       318 ~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs  370 (381)
                              +|..++.++.+++++.+|++.|.+.+.+++||+|+ +|+++|+|+
T Consensus       225 --------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~l~GvI~  268 (268)
T TIGR00393       225 --------FMTLGPKTFKLDALLLEALEFLERRKITSLVVVDD-HNKVLGVLH  268 (268)
T ss_pred             --------hCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEECC-CCeEEEEEC
Confidence                    66678899999999999999999999999999994 689999985

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.38  E-value=5.5e-12  Score=124.70  Aligned_cols=113  Identities=13%  Similarity=0.172  Sum_probs=97.4

Q ss_pred             ccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCC
Q 016866          242 GEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDAN  321 (381)
Q Consensus       242 ~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~  321 (381)
                      .+.|.++++++.+++++.+++++|.+++++.+||+| +++++|++|.+|+....       .   ..++.+         
T Consensus        91 ~eim~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD-~gklvGIVT~rDL~~~~-------~---~~~V~d---------  150 (475)
T TIGR01303        91 RDLVLDTPITLAPHDTVSDAMALIHKRAHGAAVVIL-EDRPVGLVTDSDLLGVD-------R---FTQVRD---------  150 (475)
T ss_pred             hhccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEE-CCEEEEEEEHHHhhcCC-------C---CCCHHH---------
Confidence            344777889999999999999999999999999998 57999999999984321       0   235666         


Q ss_pred             CCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 016866          322 PSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  379 (381)
Q Consensus       322 ~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~  379 (381)
                          +|..+++++.+++++.+|++.|.+++++++||||+ +++++|+||.+||+++..
T Consensus       151 ----IMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~-~g~LvGIIT~~DLl~~~~  203 (475)
T TIGR01303       151 ----IMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDA-DGTLAGILTRTGALRATI  203 (475)
T ss_pred             ----HccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHHh
Confidence                67778999999999999999999999999999994 689999999999998653

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.37  E-value=7.9e-12  Score=100.04  Aligned_cols=114  Identities=18%  Similarity=0.289  Sum_probs=90.9

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866          158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  237 (381)
Q Consensus       158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~  237 (381)
                      +++++.+++++.+|++.|.+++++.+||+|+   +|   +++|+++..++++++.......     ..     .+    +
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~Giv~~~dl~~~~~~~~~~~-----~~-----~~----~   61 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDK---EG---KYVGTISLTDILWKLKGLENLD-----LE-----RL----V   61 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECC---CC---cEEEEEeHHHHHHHhhccCchh-----HH-----HH----h
Confidence            4678999999999999999999999999975   56   7999999999998774322110     00     00    0


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866          238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  293 (381)
Q Consensus       238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  293 (381)
                      ...+.++|.+++.++.+++++.++++.|.+.+  .+||+|++|+++|++|.+|+++
T Consensus        62 ~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~  115 (116)
T cd04643          62 DLKVIDVMNTDVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK  115 (116)
T ss_pred             CCcHHHHhcCCCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence            12344557778999999999999999998765  5999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.37  E-value=1.4e-11  Score=98.04  Aligned_cols=110  Identities=19%  Similarity=0.361  Sum_probs=92.2

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866          158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  237 (381)
Q Consensus       158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~  237 (381)
                      ++.++.+++++.+|++.|.+.+.+.+||+++   +|   +++|+++..++++++.....        ...          
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~~l~~~~~~~~~--------~~~----------   57 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDP---DE---RPIGIVTERDIVRAVAAGID--------LDT----------   57 (112)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEECC---CC---CEEEEeeHHHHHHHHhccCC--------Ccc----------
Confidence            4678899999999999999999999999976   46   89999999999886643211        111          


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866          238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  293 (381)
Q Consensus       238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  293 (381)
                        .+.++|..++.++.+++++.++++.|.+++...+||++++|+++|+++.+|+++
T Consensus        58 --~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~  111 (112)
T cd04624          58 --PVSEIMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR  111 (112)
T ss_pred             --CHHHhccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence              233447778899999999999999999999999999998899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.37  E-value=1.6e-11  Score=102.76  Aligned_cols=126  Identities=19%  Similarity=0.301  Sum_probs=92.5

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhh-ccc------ccccccHHHHHhc----
Q 016866          248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAY-AQI------HLDEMNIHQALQL----  316 (381)
Q Consensus       248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~-~~~------~~~~~~v~~~l~~----  316 (381)
                      +++++.+++++.++++.|.+.+++.+||+|+ |+++|+++..|+.+.+..... ...      .....++.++++.    
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (143)
T cd04634           2 NPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEETK   80 (143)
T ss_pred             CcEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHHH
Confidence            5678999999999999999999999999997 999999999999886543221 000      0000111111000    


Q ss_pred             ---CCCCCCCcc-cCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 016866          317 ---GQDANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  376 (381)
Q Consensus       317 ---~~~~~~~~~-~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~  376 (381)
                         ......+.. +|..++.++.+++++.+++..|.+.+.+++||++ + ++++|+||..|+++
T Consensus        81 ~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~-~~~~Gvvt~~dl~~  142 (143)
T cd04634          81 RALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVE-D-GRLVGIVTRGDIIE  142 (143)
T ss_pred             HHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE-C-CEEEEEEEHHHhhc
Confidence               000011121 5667899999999999999999999999999999 4 89999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.37  E-value=3e-12  Score=104.48  Aligned_cols=113  Identities=15%  Similarity=0.225  Sum_probs=92.0

Q ss_pred             CCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccccccccc
Q 016866          157 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  236 (381)
Q Consensus       157 ~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~  236 (381)
                      .+++++.+++++.+|++.|.+++++.+||+|+   +|   +++|+++..++++.+......       ..          
T Consensus         2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~---~~---~~~Gii~~~dl~~~~~~~~~~-------~~----------   58 (124)
T cd04608           2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDE---SG---KILGMVTLGNLLSSLSSGKVQ-------PS----------   58 (124)
T ss_pred             CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CC---CEEEEEEHHHHHHHHHHhccC-------CC----------
Confidence            36788999999999999999999999999976   46   799999999998765432110       11          


Q ss_pred             cccccccccCCCceEecCCCCHHHHHHHHH---------hCCCcEEEEEcCCCcEEEEEeHHHHHHH
Q 016866          237 WVPRIGEANGRPFAMLRPTASLGSALALLV---------QADVSSIPIVDDNDSLLDIYSRSDITAL  294 (381)
Q Consensus       237 ~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~---------~~~~~~lpVvd~~g~lvGiis~~Di~~l  294 (381)
                        ..++++|.+++.++.+++++.++.+++.         +.+...+||+|++|+++|++|.+|++++
T Consensus        59 --~~v~~im~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~  123 (124)
T cd04608          59 --DPVSKALYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSY  123 (124)
T ss_pred             --CcHHHHhhccceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhh
Confidence              2355669999999999999999999653         3367888999988999999999999874

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.37  E-value=7.7e-12  Score=123.84  Aligned_cols=112  Identities=17%  Similarity=0.323  Sum_probs=97.5

Q ss_pred             ccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCC---CcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCC
Q 016866          244 ANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN---DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDA  320 (381)
Q Consensus       244 ~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~---g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~  320 (381)
                      .|.+++.++.+++++.+++++|.+++++++||+|++   ++++|+++.+|+.....         .+.++.+        
T Consensus        85 ~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~~---------~~~~V~d--------  147 (450)
T TIGR01302        85 GIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVKD---------KGKPVSE--------  147 (450)
T ss_pred             ceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhhc---------CCCCHHH--------
Confidence            356688999999999999999999999999999987   79999999999975321         0245666        


Q ss_pred             CCCcccCC-CcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 016866          321 NPSLGFNG-QRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  378 (381)
Q Consensus       321 ~~~~~~m~-~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l  378 (381)
                           +|. .++.++++++++.++++.|.+++.+.+||+| ++|+++|+||..||++.+
T Consensus       148 -----vm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVD-e~G~lvGiVT~~DIl~~~  200 (450)
T TIGR01302       148 -----VMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVD-KNGELVGLITMKDIVKRR  200 (450)
T ss_pred             -----hhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEc-CCCcEEEEEEhHHhhhcc
Confidence                 555 3789999999999999999999999999999 479999999999999875

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.36  E-value=8.1e-12  Score=99.88  Aligned_cols=109  Identities=15%  Similarity=0.242  Sum_probs=87.7

Q ss_pred             CceEeCCCCCHHHHHHHHHhCC-cceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccccccccc
Q 016866          158 PLVQAGPYDSLKEVALKILQNK-VATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  236 (381)
Q Consensus       158 ~~i~v~~~~sl~~a~~~m~~~~-i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~  236 (381)
                      ++.++.+++++.+|++.|.+++ .+.+||+|+   +|   +++|+++..|+++......         ...++       
T Consensus         2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~dl~~~~~~~~---------~~~~v-------   59 (114)
T cd04801           2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDN---EG---RYVGIISLADLRAIPTSQW---------AQTTV-------   59 (114)
T ss_pred             CcceeCCCCCHHHHHHHHhccCCceeEEEEcC---CC---cEEEEEEHHHHHHHHHhhc---------cccch-------
Confidence            5678899999999999987775 889999975   56   7999999999988553210         01122       


Q ss_pred             cccccccccCC--CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866          237 WVPRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  293 (381)
Q Consensus       237 ~~~~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  293 (381)
                           .++|..  ++.++.+++++.+|++.|.+++.+.+||+|++|+++|+++.+|+++
T Consensus        60 -----~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~  113 (114)
T cd04801          60 -----IQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR  113 (114)
T ss_pred             -----hhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence                 233442  3568999999999999999999999999998899999999999864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.36  E-value=9.6e-12  Score=124.02  Aligned_cols=111  Identities=14%  Similarity=0.154  Sum_probs=96.6

Q ss_pred             cCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcC---CCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCC
Q 016866          245 NGRPFAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDAN  321 (381)
Q Consensus       245 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~  321 (381)
                      |.++++++.+++++.+++++|.+++++.+||+|+   +|+++|++|.+|+.....         .+.++.+         
T Consensus       106 mi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~~---------~~~~V~e---------  167 (505)
T PLN02274        106 FVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVND---------RETKLSE---------  167 (505)
T ss_pred             ccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhccc---------cCCcHHH---------
Confidence            5568899999999999999999999999999997   489999999999965321         1356777         


Q ss_pred             CCcccCCCc--ceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 016866          322 PSLGFNGQR--CQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  378 (381)
Q Consensus       322 ~~~~~m~~~--~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l  378 (381)
                          +|..+  +.++.+++++.+|++.|.+++++++||||+ +++++|+||.+||++++
T Consensus       168 ----IMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~-~g~LvGvITr~DIlk~~  221 (505)
T PLN02274        168 ----VMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNE-DGELVDLVTRTDVKRVK  221 (505)
T ss_pred             ----HhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHh
Confidence                55544  789999999999999999999999999994 68999999999999886

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.36  E-value=6.6e-12  Score=124.52  Aligned_cols=117  Identities=14%  Similarity=0.239  Sum_probs=100.5

Q ss_pred             cccccccCCCceEecCCCCHHHHHHHHHh-----CCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHH
Q 016866          239 PRIGEANGRPFAMLRPTASLGSALALLVQ-----ADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQA  313 (381)
Q Consensus       239 ~~v~~~~~~~~~~v~~~~~l~~a~~~m~~-----~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~  313 (381)
                      .+++++|.+++.+++++.++.++++.|.+     ++...++|+|++++++|+++.+|++...          .+.++++ 
T Consensus       131 ~tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~a~----------~~~~v~~-  199 (449)
T TIGR00400       131 DSAGRIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLILAK----------PEEILSS-  199 (449)
T ss_pred             chHHHhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhcCC----------CCCcHHH-
Confidence            35677799999999999999999999975     4567899999899999999999987521          0245666 


Q ss_pred             HhcCCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 016866          314 LQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  379 (381)
Q Consensus       314 l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~  379 (381)
                                  +|.++++++++++++.+|++.|.+++...+|||| ++|+++|+||..|+++.+.
T Consensus       200 ------------im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD-~~g~lvGiIt~~Dil~~l~  252 (449)
T TIGR00400       200 ------------IMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVD-NEGRLVGIVTVDDIIDVIQ  252 (449)
T ss_pred             ------------HhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEc-CCCeEEEEEEHHHHHHHHH
Confidence                        5666788999999999999999999999999999 4799999999999998874

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.36  E-value=1.3e-11  Score=99.78  Aligned_cols=120  Identities=20%  Similarity=0.370  Sum_probs=94.8

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866          158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  237 (381)
Q Consensus       158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~  237 (381)
                      +++++.+++++.+|++.|.+.+++.+||+++   +|   +++|+++..++++++........   .......       .
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~G~v~~~~l~~~~~~~~~~~~---~~~~~~~-------~   65 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVVNE---DG---KLVGLLTQRDLLRAALSSLSDNG---EESLTKE-------R   65 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEECC---CC---CEEEEEEHHHHHHHhcccccccc---ccccccc-------c
Confidence            5678999999999999999999999999975   46   89999999999987653321100   0000000       1


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866          238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  293 (381)
Q Consensus       238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  293 (381)
                      ...+.+++..++..+.+++++.++++.|.+.+.+.+||+|++|+++|++|..|++.
T Consensus        66 ~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~  121 (122)
T cd04803          66 DVPVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR  121 (122)
T ss_pred             CcCHHHhhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence            11344557778999999999999999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.36  E-value=9.5e-12  Score=124.44  Aligned_cols=115  Identities=21%  Similarity=0.368  Sum_probs=99.8

Q ss_pred             cccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCC
Q 016866          241 IGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDA  320 (381)
Q Consensus       241 v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~  320 (381)
                      +++.|..++.++.+++++.+++++|.+++++++||+|++++++|+++.+|+.....      .   ..++.+        
T Consensus        89 ~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~~------~---~~~V~d--------  151 (486)
T PRK05567         89 SESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFETD------L---SQPVSE--------  151 (486)
T ss_pred             hhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhccc------C---CCcHHH--------
Confidence            34557789999999999999999999999999999999999999999999964211      0   245665        


Q ss_pred             CCCcccCC-CcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 016866          321 NPSLGFNG-QRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  378 (381)
Q Consensus       321 ~~~~~~m~-~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l  378 (381)
                           +|. .+++++.+++++.++++.|.+++++.+||+| ++|+++|+||..||++.+
T Consensus       152 -----im~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVD-e~g~lvGiIT~~DLl~~~  204 (486)
T PRK05567        152 -----VMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVD-DNGRLKGLITVKDIEKAE  204 (486)
T ss_pred             -----HcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEc-CCCcEEEEEEhHHhhhhh
Confidence                 555 5789999999999999999999999999999 479999999999999875

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.35  E-value=1.2e-11  Score=100.48  Aligned_cols=123  Identities=21%  Similarity=0.343  Sum_probs=94.7

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866          158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  237 (381)
Q Consensus       158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~  237 (381)
                      +++++.+++++.+|+++|.+.+.+.+||+++  .+|   +++|+++..++++++.........    .....    ....
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~--~~~---~~~G~v~~~dl~~~~~~~~~~~~~----~~~~~----~~~~   68 (125)
T cd04631           2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDE--GTG---KLVGIITATDILKYLGGGEKFNKI----KTGNG----LEAI   68 (125)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCcccceeEeC--CCC---EEEEEEEHHHHHHHhhccchhccc----ccccc----chhh
Confidence            5678899999999999999999999999975  237   899999999999877532211000    00000    0001


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866          238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  293 (381)
Q Consensus       238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  293 (381)
                      ...+.+++..++.++.+++++.++++.|.+.+.+.+||+|++|+++|+||..|+++
T Consensus        69 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~  124 (125)
T cd04631          69 NEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK  124 (125)
T ss_pred             hcCHHHHhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence            12344557778999999999999999999999999999998799999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.35  E-value=1.9e-11  Score=97.90  Aligned_cols=111  Identities=18%  Similarity=0.367  Sum_probs=91.4

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866          158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  237 (381)
Q Consensus       158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~  237 (381)
                      ++..+.+++++.+|++.|.+.+.+.+||+|+   .|   +++|+++..|+++.+......       ...          
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~dl~~~~~~~~~~-------~~~----------   58 (115)
T cd04593           2 PPPVLSATTPLREAAEQLIESKHGSALVVDR---DG---GVVGIITLPDLLRALEADEAG-------EPS----------   58 (115)
T ss_pred             CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcC---CC---CEEEEEEHHHHHHHHhccccc-------ccc----------
Confidence            4567889999999999999999999999975   56   899999999998865421100       001          


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCC--CcEEEEEeHHHHHH
Q 016866          238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN--DSLLDIYSRSDITA  293 (381)
Q Consensus       238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--g~lvGiis~~Di~~  293 (381)
                        .+.++|..++.++.+++++.+++++|.+++...+||+|++  |+++|++|.+|+++
T Consensus        59 --~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~  114 (115)
T cd04593          59 --AVDEVATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL  114 (115)
T ss_pred             --cHHHhccCCceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence              1334467788999999999999999999999999999977  89999999999875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.35  E-value=1.5e-11  Score=97.44  Aligned_cols=105  Identities=18%  Similarity=0.264  Sum_probs=89.9

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866          158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  237 (381)
Q Consensus       158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~  237 (381)
                      ++.++.+++++.+|++.|.+++.+.+||+|+   +|   +++|+++..+++...             ...+         
T Consensus         3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~-------------~~~~---------   54 (108)
T cd04596           3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDE---KN---KVVGIVTSKDVAGKD-------------PDTT---------   54 (108)
T ss_pred             ccEEeCCCCCHHHHHHHHHHcCCCceeEECC---CC---eEEEEecHHHHhccc-------------cccc---------
Confidence            5788999999999999999999999999975   57   899999999997521             0112         


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866          238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  293 (381)
Q Consensus       238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  293 (381)
                         +.++|..++.++.+++++.++++.|.+++...+||+|++|+++|+++..|+++
T Consensus        55 ---v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~  107 (108)
T cd04596          55 ---IEKVMTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK  107 (108)
T ss_pred             ---HHHHhcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence               33446677889999999999999999999999999998999999999999875

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.35  E-value=6.9e-12  Score=119.42  Aligned_cols=116  Identities=16%  Similarity=0.199  Sum_probs=98.6

Q ss_pred             CCCCCC--ceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccc
Q 016866          153 RPCPRP--LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVS  230 (381)
Q Consensus       153 ~~~~~~--~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~  230 (381)
                      .+|.++  ++++++++++.+|++.|.+++...+||+|+   +|   +++|+++..|+.+++....        ..     
T Consensus       201 ~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~---~g---~~iG~vt~~dl~~~~~~~~--------~~-----  261 (321)
T PRK11543        201 HLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDA---QQ---QVQGVFTDGDLRRWLVGGG--------AL-----  261 (321)
T ss_pred             HHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEecHHHHHHHHhCCC--------Cc-----
Confidence            367777  999999999999999999999999999976   57   8999999999987553210        01     


Q ss_pred             cccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHH
Q 016866          231 SIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL  294 (381)
Q Consensus       231 ~l~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l  294 (381)
                             ...+.++|.+++.++.+++++.+|++.|.+++...+||+|++|+++|++|++|++++
T Consensus       262 -------~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~  318 (321)
T PRK11543        262 -------TTPVNEAMTRGGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA  318 (321)
T ss_pred             -------CCcHHHhcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence                   123456688899999999999999999999999999999988999999999999863

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.34  E-value=2.5e-11  Score=97.71  Aligned_cols=113  Identities=17%  Similarity=0.240  Sum_probs=89.1

Q ss_pred             CceEecCCCCHHHHHHHHHhCC-CcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCccc
Q 016866          248 PFAMLRPTASLGSALALLVQAD-VSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF  326 (381)
Q Consensus       248 ~~~~v~~~~~l~~a~~~m~~~~-~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~  326 (381)
                      ++.++.+++++.++++.|.+.+ .+.+||+|+ |+++|+++..|+..+........ ...+.++.+             +
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~~~~~~~~~-~~~~~~v~~-------------~   66 (119)
T cd04598           2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMELLSTPYGRA-LYGKKPVSE-------------V   66 (119)
T ss_pred             CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHHHhchhhHH-HHcCCcHHH-------------h
Confidence            4567899999999999998877 899999998 99999999999987544211000 001234555             6


Q ss_pred             CCCcceEEcCCCCHHHHHHHHHhCCCCE---EEEEeCCCCeEEEEEehHHHHH
Q 016866          327 NGQRCQMCLRSDPLHKVMERLANPGVRR---LVIVEAGSKRVEGIISLSDVFR  376 (381)
Q Consensus       327 m~~~~~~v~~~~tl~~~~~~m~~~~~~~---l~Vvd~~~~~liGiIs~~DIl~  376 (381)
                      |..++.++.+++++.++++.|.+.+..+   .+||++ +|+++|+||..|+++
T Consensus        67 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~-~~~~~Gvvs~~di~~  118 (119)
T cd04598          67 MDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTE-EGRYLGIGTVKDLLR  118 (119)
T ss_pred             cCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEee-CCeEEEEEEHHHHhc
Confidence            6678899999999999999999998643   468884 699999999999975

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.34  E-value=2.3e-11  Score=96.96  Aligned_cols=111  Identities=19%  Similarity=0.349  Sum_probs=92.7

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866          158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  237 (381)
Q Consensus       158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~  237 (381)
                      ++.++.+++++.++++.|.+.+.+.+||+++   +|   +++|+++..++.+++......       ..           
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~~i~~~~~~~~~~-------~~-----------   58 (114)
T cd04604           3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDE---DG---RLVGIFTDGDLRRALEKGLDI-------LT-----------   58 (114)
T ss_pred             cccccCCCCcHHHHHHHHHhcCccEEEEEcC---CC---CEEEEechHHHHHHHhccCcc-------cc-----------
Confidence            4667899999999999998888999999976   46   899999999999876532211       00           


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866          238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  293 (381)
Q Consensus       238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  293 (381)
                       ..++++|..++.++.+++++.++++.|.+++...+||++++|+++|+++..|+++
T Consensus        59 -~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~  113 (114)
T cd04604          59 -LPVADVMTRNPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR  113 (114)
T ss_pred             -CCHHHhhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence             1244557778889999999999999999999999999998899999999999875

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=99.34  E-value=2.2e-11  Score=96.30  Aligned_cols=100  Identities=22%  Similarity=0.344  Sum_probs=87.0

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCcEEEEEcC---CCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCc
Q 016866          248 PFAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSL  324 (381)
Q Consensus       248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~  324 (381)
                      ....+.+++++.++.+.|.+.+...+||+|+   +|+++|+++..|+.+...+                           
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~---------------------------   55 (105)
T cd04591           3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN---------------------------   55 (105)
T ss_pred             ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH---------------------------
Confidence            4567899999999999999998999999997   6999999999999875431                           


Q ss_pred             ccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866          325 GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  377 (381)
Q Consensus       325 ~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~  377 (381)
                       +|..++.++.+++++.++++.|.+++.+++||++  +|+++|+||..|++++
T Consensus        56 -~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~--~~~~~Gvvt~~dl~~~  105 (105)
T cd04591          56 -YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD--EGRLVGIITRKDLLKA  105 (105)
T ss_pred             -hccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE--CCeEEEEEEhhhhhcC
Confidence             1223578999999999999999999999999997  4899999999999864

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.34  E-value=2.3e-11  Score=96.10  Aligned_cols=106  Identities=20%  Similarity=0.336  Sum_probs=89.9

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866          158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  237 (381)
Q Consensus       158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~  237 (381)
                      ++..+.+++++.+|++.|.+++...+||+++   +|   +++|+++..|+++....            ..+         
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~dl~~~~~~------------~~~---------   55 (109)
T cd04583           3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDK---DN---KLLGIVSLESLEQAYKE------------AKS---------   55 (109)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCceEEEEcC---CC---cEEEEEEHHHHHHHhhc------------CCc---------
Confidence            5678899999999999999999999999976   46   79999999999874321            012         


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866          238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  293 (381)
Q Consensus       238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  293 (381)
                         +.++|...+.++.+++++.++++.|.+.+.+.+||++++|+++|++|.+|+++
T Consensus        56 ---v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~  108 (109)
T cd04583          56 ---LEDIMLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD  108 (109)
T ss_pred             ---HhHhhcCCceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence               22346667889999999999999999999999999998899999999999864

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.34  E-value=2.5e-11  Score=96.77  Aligned_cols=111  Identities=14%  Similarity=0.242  Sum_probs=90.8

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866          158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  237 (381)
Q Consensus       158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~  237 (381)
                      +...+.+++++.+|++.|.+.+.+.+||+|+   +|   +++|+++..++.+......       .....          
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~---~~---~~~G~v~~~dl~~~~~~~~-------~~~~~----------   58 (113)
T cd04615           2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDD---KK---RLVGIITRYDVLSYALESE-------ELKDA----------   58 (113)
T ss_pred             CCEEeeCCCcHHHHHHHHHHcCCceEeEEcC---CC---CEEEEEEHHHHHHhhhhhh-------hhcCC----------
Confidence            3567899999999999999999999999976   46   7999999999987432210       00111          


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866          238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  293 (381)
Q Consensus       238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  293 (381)
                        .+.++|..++.++.+++++.++++.|.+.+...+||+|++|+++|+++..|+++
T Consensus        59 --~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~  112 (113)
T cd04615          59 --KVREVMNSPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR  112 (113)
T ss_pred             --cHHHhccCCceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence              233447778899999999999999999999999999998899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.34  E-value=2.6e-11  Score=97.73  Aligned_cols=120  Identities=19%  Similarity=0.288  Sum_probs=94.2

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866          158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  237 (381)
Q Consensus       158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~  237 (381)
                      ++.++++++++.+|++.|.+.+...+||+++    |   +++|+++..+++++.........         ..+...+..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~G~i~~~~l~~~~~~~~~~~~---------~~~~~~~~~   65 (122)
T cd04585           2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR----G---KLVGIVTDRDLKLASPSKATTLD---------IWELYYLLS   65 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHhCCcceeeEecC----C---eEEEEEeHHHHHHhhhccccccc---------chhhhhhhc
Confidence            4678899999999999999999999999964    5   79999999999986643221110         000000011


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866          238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  293 (381)
Q Consensus       238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  293 (381)
                      ...+.++|.+++.++.+++++.++++.|.+.+.+.+||+|++|+++|++|..|+++
T Consensus        66 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~  121 (122)
T cd04585          66 KIKVSDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR  121 (122)
T ss_pred             ccCHHHhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence            12345667788999999999999999999999999999998899999999999875

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.33  E-value=1.3e-11  Score=98.53  Aligned_cols=112  Identities=23%  Similarity=0.300  Sum_probs=91.7

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866          158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  237 (381)
Q Consensus       158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~  237 (381)
                      +++++.+++++.+|++.|.+++.+.+||+++   ++   +++|+++..++++.+.......     ...           
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~G~v~~~~l~~~~~~~~~~~-----~~~-----------   59 (114)
T cd04629           2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDD---NG---NLVGFLSEQDCLKQLLESSYHC-----DGV-----------   59 (114)
T ss_pred             CCeEeCCCCCHHHHHHHHHhcCCCCccEECC---CC---eEEEEeehHHHHHHhhhhhhcc-----CCC-----------
Confidence            4678899999999999999999999999975   56   7999999999998664321000     001           


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866          238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  293 (381)
Q Consensus       238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  293 (381)
                       ..+.++|..++.++.+++++.++++.|.+++.+.+||+|+ |+++|++|.+|+++
T Consensus        60 -~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~  113 (114)
T cd04629          60 -ATVRDIMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR  113 (114)
T ss_pred             -ccHHHHhccCceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence             1234557778889999999999999999999999999996 99999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.33  E-value=9.7e-12  Score=118.66  Aligned_cols=116  Identities=16%  Similarity=0.174  Sum_probs=97.0

Q ss_pred             CCCCCC--CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcc
Q 016866          152 GRPCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPV  229 (381)
Q Consensus       152 g~~~~~--~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i  229 (381)
                      +.+|.+  +++++.+++++.+|++.|.+++.+.+||+|+   +|   +++|++|..|+.+.+....              
T Consensus       205 ~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~---~g---~lvGivt~~Dl~~~~~~~~--------------  264 (326)
T PRK10892        205 SDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDD---NM---KIEGIFTDGDLRRVFDMGI--------------  264 (326)
T ss_pred             HHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcC---CC---cEEEEEecHHHHHHHhcCC--------------
Confidence            346776  8999999999999999999999888888875   57   8999999999987432110              


Q ss_pred             cccccccc-ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHH
Q 016866          230 SSIQLGTW-VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL  294 (381)
Q Consensus       230 ~~l~ig~~-~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l  294 (381)
                            .| ...++++|.+++.++.+++++.+|++.|.+++++.+||++ +|+++|++|++|+++.
T Consensus       265 ------~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~  323 (326)
T PRK10892        265 ------DLRQASIADVMTPGGIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRA  323 (326)
T ss_pred             ------CcccCCHHHhcCCCCEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence                  11 1235566999999999999999999999999999999997 6899999999999873

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.33  E-value=2.5e-11  Score=96.38  Aligned_cols=109  Identities=16%  Similarity=0.242  Sum_probs=89.2

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866          158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  237 (381)
Q Consensus       158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~  237 (381)
                      +++++.+++++.+|++.|.+++...+||++++  +|   +++|+++..+++++......         ..++.       
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~--~~---~~~G~v~~~~l~~~~~~~~~---------~~~~~-------   60 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVYDGD--LD---NIIGVVHVKDLLRALAEGEE---------DLDLR-------   60 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhCCCceEEEECCC--Cc---eEEEEEEHHHHHHHHHcCCC---------cCCHH-------
Confidence            46789999999999999999999999999761  26   89999999999986642110         01111       


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866          238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  293 (381)
Q Consensus       238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  293 (381)
                           +.+ .++.++.+++++.++++.|.+++.+.+||+|++|+++|++|.+|++.
T Consensus        61 -----~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~  110 (111)
T cd04590          61 -----DLL-RPPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE  110 (111)
T ss_pred             -----HHh-cCCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence                 223 35788999999999999999999999999998899999999999864

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.33  E-value=4e-11  Score=94.51  Aligned_cols=104  Identities=19%  Similarity=0.366  Sum_probs=88.2

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866          248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  327 (381)
Q Consensus       248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m  327 (381)
                      ++.++.++.++.+++..|.+.+.+.+||++++|+++|+++..++.....          +.++.+             +|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~~~----------~~~~~~-------------~~   58 (106)
T cd04638           2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRNPE----------EEQLAL-------------LM   58 (106)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhccc----------cchHHH-------------Hh
Confidence            4567889999999999999999999999998899999999999975211          123333             44


Q ss_pred             CCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 016866          328 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  376 (381)
Q Consensus       328 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~  376 (381)
                      ..++.++.+++++.++++.|.+++.+.+||+| + |+++|+||..|+++
T Consensus        59 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~-~~~~G~it~~d~~~  105 (106)
T cd04638          59 TRDPPTVSPDDDVKEAAKLMVENNIRRVPVVD-D-GKLVGIVTVADIVR  105 (106)
T ss_pred             cCCCceECCCCCHHHHHHHHHHcCCCEEEEEE-C-CEEEEEEEHHHhhc
Confidence            45788999999999999999999999999999 3 79999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.33  E-value=2.4e-11  Score=96.55  Aligned_cols=109  Identities=15%  Similarity=0.277  Sum_probs=90.3

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866          158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  237 (381)
Q Consensus       158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~  237 (381)
                      ++..+.+++++.+|++.|.+++.+.+||+++   +|   +++|+++..|+..+.....        ....          
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~dl~~~~~~~~--------~~~~----------   57 (111)
T cd04626           2 DFPTIDEDASIREALHEMLKYNTNEIIVKDN---EE---KLKGVVTFTDILDLDLFES--------FLEK----------   57 (111)
T ss_pred             CceEECCCccHHHHHHHHHHhCCCeEEEEcC---CC---CEEEEEehHHhHHHHhhcc--------cccC----------
Confidence            5678899999999999999999999999975   56   7999999999987542110        0111          


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866          238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  293 (381)
Q Consensus       238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  293 (381)
                        .+.++|.+++.++.+++++.++++.|.+++...+||+|+ |+++|++|..|++.
T Consensus        58 --~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~  110 (111)
T cd04626          58 --KVFNIVSQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKDILD  110 (111)
T ss_pred             --cHHHHhcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence              233447778899999999999999999999999999997 99999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.33  E-value=3e-11  Score=96.65  Aligned_cols=110  Identities=19%  Similarity=0.328  Sum_probs=87.0

Q ss_pred             CceEeCCCCCHHHHHHHHHhCC-cceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccccccccc
Q 016866          158 PLVQAGPYDSLKEVALKILQNK-VATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  236 (381)
Q Consensus       158 ~~i~v~~~~sl~~a~~~m~~~~-i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~  236 (381)
                      +.+.+.+++++.+|++.|.+++ ...+||.++    |   +++|+++..|+++++.....       ....         
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~---~~~G~v~~~dl~~~~~~~~~-------~~~~---------   58 (115)
T cd04620           2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEK----G---RLLGIFTERDIVRLTAIGKD-------LSDL---------   58 (115)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCC----C---cEEEEEeHHHHHHHHhcCCC-------cccc---------
Confidence            4567899999999999998888 566777742    6   79999999999986542110       0011         


Q ss_pred             cccccccccCCCceEecCC--CCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866          237 WVPRIGEANGRPFAMLRPT--ASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  293 (381)
Q Consensus       237 ~~~~v~~~~~~~~~~v~~~--~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  293 (381)
                         .+.++|..++.++.++  +++.++++.|.+++...+||+|++|+++|++|++|+++
T Consensus        59 ---~i~~~~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~  114 (115)
T cd04620          59 ---PIGEVMTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ  114 (115)
T ss_pred             ---CHHHhcCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence               2334477778888887  78999999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.32  E-value=2.2e-11  Score=100.17  Aligned_cols=127  Identities=19%  Similarity=0.314  Sum_probs=94.1

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCC---CCccccCccccccc
Q 016866          158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSS---SLPILQQPVSSIQL  234 (381)
Q Consensus       158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~---~~~~~~~~i~~l~i  234 (381)
                      +++++.+++++.+|++.|.+++++++||+|+   ++   +++|+++..++++++.........   .......  .....
T Consensus         2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~---~~---~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~   73 (132)
T cd04636           2 DVITVKKDDTLRDVVEILLTGKISGVPVVDN---EG---RVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLD--ESKIK   73 (132)
T ss_pred             CCeEeCCCCcHHHHHHHHHHhCCCccceECC---CC---CEEEEEeHHHHHHHHhccCCcccccccccccccc--hHHHH
Confidence            5678999999999999999999999999975   56   799999999999877532211000   0000000  00000


Q ss_pred             cccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866          235 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  293 (381)
Q Consensus       235 g~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  293 (381)
                      ......+.++|.+++..+.+++++.++++.|.+.+.+.+||+|+ |+++|++|..|+++
T Consensus        74 ~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~  131 (132)
T cd04636          74 KLLGKKVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR  131 (132)
T ss_pred             HHcCCCHHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence            00011345667778899999999999999999999999999997 99999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.32  E-value=1.3e-11  Score=102.08  Aligned_cols=130  Identities=18%  Similarity=0.325  Sum_probs=94.9

Q ss_pred             CCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccccc--c-
Q 016866          157 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI--Q-  233 (381)
Q Consensus       157 ~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l--~-  233 (381)
                      +++.++.+++++.+|++.|.+++.+++||+|+   ++   +++|+++..++.++....+.................  . 
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~---~~---~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (135)
T cd04586           2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDD---DG---RLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAF   75 (135)
T ss_pred             CCCEEeCCCCCHHHHHHHHHHcCCCCceEECC---CC---CEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHH
Confidence            46788999999999999999999999999975   56   799999999998865432210000000000000000  0 


Q ss_pred             ccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866          234 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  293 (381)
Q Consensus       234 ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  293 (381)
                      .......+.++|.+++.++.+++++.++++.|.+.+.+.+||+| +|+++|++|..|+++
T Consensus        76 ~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~  134 (135)
T cd04586          76 VRSHGRKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR  134 (135)
T ss_pred             HHhcCCCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence            00011235566778899999999999999999999999999999 899999999999875

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.32  E-value=3.1e-11  Score=95.87  Aligned_cols=109  Identities=20%  Similarity=0.370  Sum_probs=90.1

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866          158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  237 (381)
Q Consensus       158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~  237 (381)
                      ++.++.++.++.+|++.|.+++.+.+||+++    +   +++|+++..++.+.+.....       ....          
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~----~---~~~G~v~~~~l~~~~~~~~~-------~~~~----------   57 (111)
T cd04800           2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD----G---RLVGIVTDRDLRNRVVAEGL-------DPDT----------   57 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC----C---EEEEEEEhHHHHHHHhccCC-------CccC----------
Confidence            5678899999999999999999999999964    5   79999999999875432100       0011          


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866          238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  293 (381)
Q Consensus       238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  293 (381)
                        .+.++|..++.++.+++++.++++.|.+++.+.+||+++ |+++|+++.+|+++
T Consensus        58 --~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~  110 (111)
T cd04800          58 --PVSEVMTAPPITIPPDATVFEALLLMLERGIHHLPVVDD-GRLVGVISATDLLR  110 (111)
T ss_pred             --CHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence              233447778899999999999999999999999999986 99999999999975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.32  E-value=4.8e-11  Score=94.59  Aligned_cols=109  Identities=24%  Similarity=0.421  Sum_probs=91.1

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866          158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  237 (381)
Q Consensus       158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~  237 (381)
                      ++..+.+++++.+|++.|.+++.+.+||+++    +   +++|+++..++.++......        ..           
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~----~---~~~G~v~~~~l~~~~~~~~~--------~~-----------   55 (111)
T cd04611           2 QILTCPPDTSLAEAASRMRERRISSIVVVDD----G---RPLGIVTERDILRLLASGPD--------LQ-----------   55 (111)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEeeC----C---EEEEEEeHHHHHHHHhcCCC--------CC-----------
Confidence            4678999999999999999989999999964    6   89999999999886642110        11           


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866          238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  293 (381)
Q Consensus       238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  293 (381)
                       ..++++|..++..+.+++++.++++.|.+.+.+.+||+|++|+++|+++.+|+++
T Consensus        56 -~~v~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~  110 (111)
T cd04611          56 -TPVGEVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ  110 (111)
T ss_pred             -cCHHHhcCCCceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence             1234457778899999999999999999999999999998899999999999874

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.32  E-value=3.2e-11  Score=99.88  Aligned_cols=129  Identities=16%  Similarity=0.228  Sum_probs=94.7

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccC-CCCCccc---cCcccccc
Q 016866          158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHS-SSSLPIL---QQPVSSIQ  233 (381)
Q Consensus       158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~-~~~~~~~---~~~i~~l~  233 (381)
                      +++++.+++++.+|++.|.+++.+.+||+|+   +|   +++|+++..++++++....... +.....+   ..+-....
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~---~~---~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (135)
T cd04621           2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDD---NG---KPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRY   75 (135)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCcceEECC---CC---CEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccc
Confidence            4577899999999999999999999999976   57   8999999999998764221110 0000000   00000000


Q ss_pred             ccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866          234 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  293 (381)
Q Consensus       234 ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  293 (381)
                      .......+.++|.+++..+.+++++.++++.|.+++.+.+||+++ |+++|+++.+|+++
T Consensus        76 ~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~  134 (135)
T cd04621          76 VKEVPLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR  134 (135)
T ss_pred             cccccccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence            011122466778888999999999999999999999999999986 99999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.31  E-value=5.3e-11  Score=94.31  Aligned_cols=108  Identities=22%  Similarity=0.423  Sum_probs=90.1

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866          158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  237 (381)
Q Consensus       158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~  237 (381)
                      +++++.+++++.+|++.|.+++++.+||+++    +   +++|+++..+++++......         ..          
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~---~~~G~v~~~~l~~~~~~~~~---------~~----------   55 (110)
T cd04588           2 PLITLNPNATLREAARLFNTHHIHGAPVVDD----G---KLVGIVTLSDIAHAIARGLE---------LA----------   55 (110)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC----C---EEEEEEEHHHHHHHHhcccc---------cc----------
Confidence            5678999999999999999999999999963    5   79999999999985432110         01          


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866          238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  293 (381)
Q Consensus       238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  293 (381)
                        .+.++|..++.++.+++++.++++.|.+.+...+||++++|+++|+++..|+++
T Consensus        56 --~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  109 (110)
T cd04588          56 --KVKDVMTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR  109 (110)
T ss_pred             --CHHHHhcCCceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence              223346678899999999999999999999999999998899999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.31  E-value=8e-11  Score=110.04  Aligned_cols=164  Identities=14%  Similarity=0.201  Sum_probs=121.9

Q ss_pred             hhhCcccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeecccCCCCcEEEEeehHHHHHHHHHhccCCCCCChhHHhh
Q 016866           50 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELET  129 (381)
Q Consensus        50 l~~~~~~d~~p~s~~vi~ld~~~~v~~A~~~l~~~~i~~~pV~d~~~~~~vGilt~~D~~~il~~~~~~~~~~~~~~l~~  129 (381)
                      |...++.++|-+-.++++++.+.|+.++++.+.+++.+.+||++.+.++++|+++..|++..+..   .....       
T Consensus        64 l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~---~~~~~-------  133 (292)
T PRK15094         64 IADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRS---DAEAF-------  133 (292)
T ss_pred             cCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhc---cCCcC-------
Confidence            44679999997767899999999999999999999999999998765679999999999864421   00000       


Q ss_pred             ccHHHHHHHHHhhhccccCCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHH
Q 016866          130 HTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  209 (381)
Q Consensus       130 ~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~  209 (381)
                       .+.   +                +|. +.+++.+++++.++++.|.+++.+.+||+|+   .|   .++|++|..||+.
T Consensus       134 -~l~---~----------------l~r-~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe---~G---~viGiVTleDIle  186 (292)
T PRK15094        134 -SMD---K----------------VLR-QAVVVPESKRVDRMLKEFRSQRYHMAIVIDE---FG---GVSGLVTIEDILE  186 (292)
T ss_pred             -CHH---H----------------HcC-CCcCcCCCCcHHHHHHHHHhcCCEEEEEEeC---CC---CEEEEeEHHHHHH
Confidence             111   1                233 4558999999999999999999999999976   56   7999999999999


Q ss_pred             HHhhhcccCCCCCccccCccccccccccccccccccCCCceEecCCCCHHHHHHHH
Q 016866          210 CICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALL  265 (381)
Q Consensus       210 ~l~~~~~~~~~~~~~~~~~i~~l~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m  265 (381)
                      .+..........  .....+..++-|             -+.+....++.+..+.+
T Consensus       187 ~ivGei~de~d~--~~~~~i~~~~~~-------------~~~v~G~~~l~dl~~~l  227 (292)
T PRK15094        187 LIVGEIEDEYDE--EDDIDFRQLSRH-------------TWTVRALASIEDFNEAF  227 (292)
T ss_pred             HHhCCCcccccc--ccccccEEeCCC-------------eEEEEeccCHHHHHHHh
Confidence            988654332110  001123333222             34678888888887776

>COG0517 FOG: CBS domain [General function prediction only]

Probab=99.31  E-value=5.8e-11  Score=95.08  Aligned_cols=112  Identities=26%  Similarity=0.472  Sum_probs=95.4

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccc
Q 016866          154 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  233 (381)
Q Consensus       154 ~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~  233 (381)
                      .|.+.++++.++.++.+|+..|.++++..+||++.    +   +++|++|.+|+++++........              
T Consensus         4 ~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~----~---~l~Giit~~di~~~~~~~~~~~~--------------   62 (117)
T COG0517           4 IMTKDVITVKPDTSVRDALLLMSENGVSAVPVVDD----G---KLVGIITERDILRALAAGGKRLL--------------   62 (117)
T ss_pred             cccCCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC----C---EEEEEEEHHHHHHHHhccCCccc--------------
Confidence            34578899999999999999999999999999965    2   59999999999997764432210              


Q ss_pred             ccccccccccccCCCceEecCCCCHHHHHHHHHh-CCCcEEEEEcCCC-cEEEEEeHHHHH
Q 016866          234 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQ-ADVSSIPIVDDND-SLLDIYSRSDIT  292 (381)
Q Consensus       234 ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~-~~~~~lpVvd~~g-~lvGiis~~Di~  292 (381)
                            .+.++|..++.++.++.++.++.+.|.+ ++++++||+++++ +++|++|.+|++
T Consensus        63 ------~v~~v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~  117 (117)
T COG0517          63 ------PVKEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL  117 (117)
T ss_pred             ------cHHHhccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence                  2445577789999999999999999999 7999999999886 999999999973

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.30  E-value=5.2e-11  Score=94.79  Aligned_cols=111  Identities=14%  Similarity=0.202  Sum_probs=90.2

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866          158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  237 (381)
Q Consensus       158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~  237 (381)
                      +++.+.+++++.++++.|.+++.+.+||+++    |   +++|+++..+++..+......      ....+         
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~----~---~~~G~v~~~dl~~~~~~~~~~------~~~~~---------   59 (113)
T cd04587           2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG----N---KLVGIFTSKDIALRVVAQGLD------PESTL---------   59 (113)
T ss_pred             CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC----C---EEEEEEEhHHHHHHHHhcCCC------cCcCC---------
Confidence            5678899999999999999999999999963    5   799999999998644321100      00112         


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866          238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  293 (381)
Q Consensus       238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  293 (381)
                         +.++|..++.++.+++++.++++.|.+++...+||++++|+++|+++..|++.
T Consensus        60 ---v~~i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~  112 (113)
T cd04587          60 ---VERVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH  112 (113)
T ss_pred             ---HHHhcCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence               33447778889999999999999999999999999998899999999999864

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.30  E-value=3.2e-11  Score=97.33  Aligned_cols=119  Identities=19%  Similarity=0.426  Sum_probs=92.9

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866          158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  237 (381)
Q Consensus       158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~  237 (381)
                      +++++.+++++.+|++.|.+++.+.+||+++    |   +++|+++..++.+++........  ......+...      
T Consensus         2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~----~---~~~G~v~~~~l~~~~~~~~~~~~--~~~~~~~~~~------   66 (121)
T cd04633           2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG----G---KLVGIVTEKDIADALRSFRPLVR--DRHQERRIRN------   66 (121)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC----C---EEEEEEchHHHHHhhhhhhhccc--chhhhhhhhc------
Confidence            5778999999999999999999999999963    6   89999999999986653221100  0000111111      


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866          238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  293 (381)
Q Consensus       238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  293 (381)
                       ..+.++|..++.++.+++++.++++.|.+.+.+.+||+|+ |+++|+++.+|+++
T Consensus        67 -~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~  120 (121)
T cd04633          67 -LPVSDIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR  120 (121)
T ss_pred             -cCHHHHccCCceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence             1344557778999999999999999999999999999997 99999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=99.30  E-value=3.9e-11  Score=119.74  Aligned_cols=118  Identities=14%  Similarity=0.240  Sum_probs=97.3

Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCC
Q 016866          240 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  319 (381)
Q Consensus       240 ~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~  319 (381)
                      +++++|.+++.++.+++++.++++.|.+++++.+||+|++|+++|+++..|+.+.........    +.++.+       
T Consensus       336 ~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~----~~~v~~-------  404 (454)
T TIGR01137       336 TVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAGKANP----DDAVSK-------  404 (454)
T ss_pred             CHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhccCCCc----CCCHHH-------
Confidence            567889999999999999999999999999999999998899999999999988544221100    235666       


Q ss_pred             CCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 016866          320 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  378 (381)
Q Consensus       320 ~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l  378 (381)
                            +|..++.++++++++.++++.|.+++   .+||++ +++++|+||.+||+++|
T Consensus       405 ------im~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~-~g~liGvvt~~dll~~l  453 (454)
T TIGR01137       405 ------VMSKKFIQIGEGEKLSDLSKFLEKNS---SAIVTE-EGKPIGVVTKIDLLSFL  453 (454)
T ss_pred             ------hcCCCCeEECCcCcHHHHHHHHHHCC---eeEEEE-CCEEEEEEEHHHHHHhh
Confidence                  56667889999999999999998864   355553 58999999999999986

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.29  E-value=9.3e-11  Score=114.73  Aligned_cols=161  Identities=16%  Similarity=0.183  Sum_probs=122.4

Q ss_pred             hhCcccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeecccCCCCcEEEEeehHHHHHHHHHhccCCCCCChhHHhhc
Q 016866           51 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETH  130 (381)
Q Consensus        51 ~~~~~~d~~p~s~~vi~ld~~~~v~~A~~~l~~~~i~~~pV~d~~~~~~vGilt~~D~~~il~~~~~~~~~~~~~~l~~~  130 (381)
                      ++.++.|+|-+-.++++++.+.|+.++++.+.+++.+.+||++++..+++|+++.+|++..+.   .  ...        
T Consensus       189 ~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~---~--~~~--------  255 (408)
T TIGR03520       189 GNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLN---K--KNF--------  255 (408)
T ss_pred             CCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhc---c--CCC--------
Confidence            368899999887899999999999999999999999999999977678999999999975331   1  000        


Q ss_pred             cHHHHHHHHHhhhccccCCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHH
Q 016866          131 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  210 (381)
Q Consensus       131 ~i~~~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~  210 (381)
                      .+.   +                .+ +++..|++++++.++++.|.+++.|.++|+|+   .|   ...|++|..||+..
T Consensus       256 ~l~---~----------------~~-~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE---~G---~~~GiVT~eDilee  309 (408)
T TIGR03520       256 DWQ---S----------------LL-REPYFVPENKKLDDLLRDFQEKKNHLAIVVDE---YG---GTSGLVTLEDIIEE  309 (408)
T ss_pred             CHH---H----------------Hc-CCCeEeCCCCcHHHHHHHHHhcCceEEEEEcC---CC---CEEEEEEHHHHHHH
Confidence            111   1                22 46789999999999999999999999999976   56   79999999999998


Q ss_pred             HhhhcccCCCCCccccCccccccccccccccccccCCCceEecCCCCHHHHHHHHH
Q 016866          211 ICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLV  266 (381)
Q Consensus       211 l~~~~~~~~~~~~~~~~~i~~l~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~  266 (381)
                      +.........   .....+..++             .....++...++.++.+.|.
T Consensus       310 ivgei~de~d---~~~~~i~~~~-------------~~~~~v~G~~~l~~l~~~l~  349 (408)
T TIGR03520       310 IVGDISDEFD---DEDLIYSKID-------------DNNYVFEGKTSLKDFYKILK  349 (408)
T ss_pred             HhCCCCCcCC---cCccceEEeC-------------CCeEEEEeccCHHHHHHHhC
Confidence            8754332110   0111222222             23456778889998888873

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=99.29  E-value=2.9e-11  Score=120.58  Aligned_cols=112  Identities=20%  Similarity=0.182  Sum_probs=96.3

Q ss_pred             ccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCC---CcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCC
Q 016866          244 ANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN---DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDA  320 (381)
Q Consensus       244 ~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~---g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~  320 (381)
                      .+..+++++.+++++.+++++|.+++++.+||+|++   ++++|+++.+|+.....         .+.++.+        
T Consensus       101 g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~~---------~~~~V~d--------  163 (495)
T PTZ00314        101 GFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVKD---------KSTPVSE--------  163 (495)
T ss_pred             ccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhccc---------CCCCHHH--------
Confidence            355678899999999999999999999999999963   89999999999874211         1356776        


Q ss_pred             CCCcccCCC--cceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 016866          321 NPSLGFNGQ--RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  378 (381)
Q Consensus       321 ~~~~~~m~~--~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l  378 (381)
                           +|..  ++.++.+++++.++++.|.+++++.+||+|+ +++++|+||.+||++..
T Consensus       164 -----iMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~-~g~liGIIT~~DIl~~~  217 (495)
T PTZ00314        164 -----VMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVND-NGELVALVSRSDLKKNR  217 (495)
T ss_pred             -----hhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcC-CCcEEEEEEehHhhhcc
Confidence                 5654  7899999999999999999999999999994 78999999999999764

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.29  E-value=4.9e-11  Score=94.95  Aligned_cols=111  Identities=25%  Similarity=0.366  Sum_probs=92.3

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866          158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  237 (381)
Q Consensus       158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~  237 (381)
                      +++++.+++++.++++.|.+++...+||+++   .|   +++|+++..++.+++.....        ..           
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~---~~~G~v~~~~l~~~~~~~~~--------~~-----------   56 (114)
T cd04613           2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDD---DG---RLVGIVSLDDIREILFDPSL--------YD-----------   56 (114)
T ss_pred             CceeeCCCCcHHHHHHHHHhCCCcceeEECC---CC---CEEEEEEHHHHHHHHhcccc--------cc-----------
Confidence            4678999999999999999999999999976   46   79999999999886532100        00           


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcC-CCcEEEEEeHHHHHH
Q 016866          238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDD-NDSLLDIYSRSDITA  293 (381)
Q Consensus       238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGiis~~Di~~  293 (381)
                      ...+.++|.+++.++.+++++.++++.|.+.+.+.+||+|+ +|+++|+++..|++.
T Consensus        57 ~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~  113 (114)
T cd04613          57 LVVASDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS  113 (114)
T ss_pred             cEEHHHhccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence            01344557788999999999999999999999999999997 799999999999874

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.29  E-value=5.8e-11  Score=94.98  Aligned_cols=109  Identities=18%  Similarity=0.277  Sum_probs=87.2

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866          158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  237 (381)
Q Consensus       158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~  237 (381)
                      +++++.+++++.+|++.|.+++...+||+|++..+|   +++|+++..|++... .           ...+         
T Consensus         3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~---~~~G~v~~~dl~~~~-~-----------~~~~---------   58 (114)
T cd04602           3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGG---KLLGIVTSRDIDFLT-D-----------SETP---------   58 (114)
T ss_pred             CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCC---EEEEEEEhHHhhhhh-c-----------cCCC---------
Confidence            467888999999999999999999999997422246   899999999986411 0           0111         


Q ss_pred             ccccccccCCCceEecC--CCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866          238 VPRIGEANGRPFAMLRP--TASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  293 (381)
Q Consensus       238 ~~~v~~~~~~~~~~v~~--~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  293 (381)
                         +.++|...+..+..  ++++.++++.|.+++...+||+|++|+++|++|.+|+++
T Consensus        59 ---v~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~  113 (114)
T cd04602          59 ---LSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK  113 (114)
T ss_pred             ---HHHhcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence               23446666667755  999999999999999999999998899999999999874

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.28  E-value=5.4e-11  Score=96.13  Aligned_cols=120  Identities=22%  Similarity=0.396  Sum_probs=93.0

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866          158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  237 (381)
Q Consensus       158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~  237 (381)
                      +++++.+++++.+|++.|.+++.+.+||+|+   +|   +++|+++..++++..........   .....       ..+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~~~~~~~~~---~~~~~-------~~~   65 (122)
T cd04635           2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQK---AG---ELIGIITRRDIIRAGSVRTSVED---QQRTQ-------TKA   65 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcccEECC---CC---cEEEEEEcHHHHhhccccccccc---hhhhh-------hhc
Confidence            5678999999999999999999999999975   57   89999999999874311100000   00000       011


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866          238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  293 (381)
Q Consensus       238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  293 (381)
                      ...+.++|..++.++.+++++.++++.|.+.+.+.+||+|++|+++|++|..|+++
T Consensus        66 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~  121 (122)
T cd04635          66 SPTVEKIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK  121 (122)
T ss_pred             cCcHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence            22345567778899999999999999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.28  E-value=8.3e-11  Score=93.28  Aligned_cols=108  Identities=19%  Similarity=0.421  Sum_probs=90.3

Q ss_pred             CCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccccccccc
Q 016866          157 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  236 (381)
Q Consensus       157 ~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~  236 (381)
                      ++++++.+++++.+|++.|.+++...+||+++    |   +++|+++..++.+.+....         ...+        
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~G~v~~~dl~~~~~~~~---------~~~~--------   57 (110)
T cd04595           2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG----G---RVVGIISRRDVEKALRHGL---------GHAP--------   57 (110)
T ss_pred             CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC----C---EEEEEEEHHHHHHHHhccc---------ccCc--------
Confidence            36788999999999999999889999999964    5   7999999999987542210         1112        


Q ss_pred             cccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866          237 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  293 (381)
Q Consensus       237 ~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  293 (381)
                          +.++|..++.++.+++++.++++.|.+++.+.+||++ +|+++|++|..|+++
T Consensus        58 ----~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~  109 (110)
T cd04595          58 ----VKDYMSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR  109 (110)
T ss_pred             ----HHHHhcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence                3344777889999999999999999999999999999 899999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.28  E-value=6.5e-11  Score=117.93  Aligned_cols=110  Identities=17%  Similarity=0.202  Sum_probs=92.1

Q ss_pred             ceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccccccccccc
Q 016866          159 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWV  238 (381)
Q Consensus       159 ~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~~  238 (381)
                      .+++.+++++.+|++.|.+++.+.+||+|+..+++   +++|++|..|+....           ...+.           
T Consensus       107 ~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~g---kLvGIVT~~DLr~~~-----------~~~~~-----------  161 (502)
T PRK07107        107 DSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHG---KLLGIVTSRDYRISR-----------MSLDT-----------  161 (502)
T ss_pred             CCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCC---EEEEEEEcHHhhccc-----------cCCCC-----------
Confidence            36899999999999999999999999997522346   899999999995310           01122           


Q ss_pred             cccccccCC--CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHH
Q 016866          239 PRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL  294 (381)
Q Consensus       239 ~~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l  294 (381)
                       .+.++|.+  +++++.+++++.+|+++|.++++..+||+|++|+++|+||.+|+++.
T Consensus       162 -~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~  218 (502)
T PRK07107        162 -KVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSH  218 (502)
T ss_pred             -CHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhc
Confidence             34455875  78899999999999999999999999999988999999999999984

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.27  E-value=7.3e-11  Score=95.45  Aligned_cols=120  Identities=23%  Similarity=0.324  Sum_probs=94.7

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866          158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  237 (381)
Q Consensus       158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~  237 (381)
                      +++++.+++++.+|++.|.+++++.+||+++    |   +++|+++..++.+.+........       ....+  .+.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~G~v~~~~l~~~~~~~~~~~~-------~~~~~--~~~~   65 (122)
T cd04637           2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED----N---ELVGVISDRDYLKAISPFLGTAG-------ETEKD--LATL   65 (122)
T ss_pred             CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC----C---eEEEEEEHHHHHHHHHHHhcccc-------chHHH--HHHH
Confidence            5678999999999999999999999999963    5   79999999999987654322100       00000  0111


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866          238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  293 (381)
Q Consensus       238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  293 (381)
                      ...+.++|..+++.+.+++++.++++.|.+++...+||+|++|+++|+++..|+++
T Consensus        66 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~  121 (122)
T cd04637          66 NRRAHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK  121 (122)
T ss_pred             HhHHHHhhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence            22345667788999999999999999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.27  E-value=6.9e-11  Score=96.56  Aligned_cols=124  Identities=15%  Similarity=0.269  Sum_probs=92.4

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866          158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  237 (381)
Q Consensus       158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~  237 (381)
                      +++.+.+++++.+|++.|.+.+.+.+||+++   ++   +++|++|..++..++........     ........ ....
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~---~~~G~it~~dl~~~~~~~~~~~~-----~~~~~~~~-~~~~   69 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVVDD---NG---KLTGIVTRHDIVDFVVRDRDKAR-----TGDRSGEK-ERML   69 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEECC---CC---cEEEEEEHHHHHHHHhhhhhhcc-----hhhhhhhh-hhhc
Confidence            4678899999999999999999999999976   46   89999999999876532110000     00000000 0001


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEc--CCCcEEEEEeHHHHHH
Q 016866          238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVD--DNDSLLDIYSRSDITA  293 (381)
Q Consensus       238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~g~lvGiis~~Di~~  293 (381)
                      ...+.++|..+++++.+++++.++++.|.+.+...+||++  ++|+++|+||.+|+++
T Consensus        70 ~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~  127 (128)
T cd04632          70 DLPVYDAMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR  127 (128)
T ss_pred             cCcHHHHhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence            1234556888899999999999999999999999999984  4699999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.27  E-value=2.5e-11  Score=117.76  Aligned_cols=119  Identities=18%  Similarity=0.314  Sum_probs=104.4

Q ss_pred             CCCCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccc
Q 016866          152 GRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  231 (381)
Q Consensus       152 g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~  231 (381)
                      +..+..+.++++|.+|+.+|+..|.++|++.+.+++.   ++   ...||+|.+|+...+....+.       ..     
T Consensus       152 ~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~---~~---~~~GIvT~~dl~~~v~~~g~~-------~~-----  213 (610)
T COG2905         152 GEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDD---SG---PLLGIVTRKDLRSRVIADGRS-------KT-----  213 (610)
T ss_pred             HHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcC---CC---CccceeehHHHHHHHHhcCCC-------cc-----
Confidence            4477899999999999999999999999999999975   56   799999999999977653322       12     


Q ss_pred             ccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHh
Q 016866          232 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  296 (381)
Q Consensus       232 l~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~  296 (381)
                             .+|+++|+.|++++...+.+.+|.-+|.++++.++||++ +|+++|++|..||+++..
T Consensus       214 -------~~V~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~s  270 (610)
T COG2905         214 -------QKVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRLFS  270 (610)
T ss_pred             -------cchhhhhccCceeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHHHHHhhC
Confidence                   356667999999999999999999999999999999997 799999999999999776

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.27  E-value=6.6e-11  Score=93.64  Aligned_cols=107  Identities=21%  Similarity=0.350  Sum_probs=87.0

Q ss_pred             CCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccccccccc
Q 016866          157 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  236 (381)
Q Consensus       157 ~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~  236 (381)
                      ++++.+.+++++.++++.|.+++...+||+++   .|   +++|+++..+++...     .       ...+        
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~-----~-------~~~~--------   55 (110)
T cd04601           2 RDPITVSPDATVAEALELMAEYGISGLPVVDD---DG---KLVGIVTNRDLRFET-----D-------LDKP--------   55 (110)
T ss_pred             CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcC---CC---EEEEEEEhhHeeecc-----c-------CCCC--------
Confidence            35678899999999999999999999999976   46   899999999986410     0       1112        


Q ss_pred             cccccccccCCCceEecC-CCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866          237 WVPRIGEANGRPFAMLRP-TASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  293 (381)
Q Consensus       237 ~~~~v~~~~~~~~~~v~~-~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  293 (381)
                          +.++|...+..+.+ ++++.++++.|.+.+.+.+||+|++|+++|+++.+|+++
T Consensus        56 ----v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~  109 (110)
T cd04601          56 ----VSEVMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK  109 (110)
T ss_pred             ----HHHhcccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence                33446555666666 999999999999999999999998899999999999874

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.26  E-value=1.3e-10  Score=92.44  Aligned_cols=110  Identities=17%  Similarity=0.364  Sum_probs=88.5

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866          158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  237 (381)
Q Consensus       158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~  237 (381)
                      .+.++.+++++.+|++.|.+++.+.++|.+    +|   +++|+++..++++++......      ...           
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~----~~---~~~G~v~~~dl~~~~~~~~~~------~~~-----------   57 (112)
T cd04625           2 TIYTVAPETLLSEAVATMAEQDLGSLVVME----RG---ELVGLLTFREVLQAMAQHGAG------VLD-----------   57 (112)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeEEEee----CC---EEEEEEEHHHHHHHHHhcCCc------hhc-----------
Confidence            467889999999999999888887777764    36   899999999999866431100      001           


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866          238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  293 (381)
Q Consensus       238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  293 (381)
                       ..+.++|..++.++.+++++.++++.|.+++...+||++ +|+++|++|.+|+++
T Consensus        58 -~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~  111 (112)
T cd04625          58 -TTVRAIMNPEPIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVISFHDVAK  111 (112)
T ss_pred             -CCHHHHhCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence             124455777888999999999999999999999999998 699999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.26  E-value=1.2e-10  Score=92.59  Aligned_cols=110  Identities=20%  Similarity=0.373  Sum_probs=89.5

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHH-HHhhhcccCCCCCccccCccccccccc
Q 016866          158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK-CICRHFKHSSSSLPILQQPVSSIQLGT  236 (381)
Q Consensus       158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~-~l~~~~~~~~~~~~~~~~~i~~l~ig~  236 (381)
                      +++++.+++++.+|++.|.+++.+.+||+++    |   +++|+++..+++. .+....       . ..          
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~----~---~~~G~i~~~~l~~~~~~~~~-------~-~~----------   56 (113)
T cd04622           2 DVVTVSPDDTIREAARLMREHDVGALPVCEN----D---RLVGIVTDRDIVVRAVAEGR-------D-PD----------   56 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC----C---EEEEEEEhHHHHHHHhhccC-------C-cc----------
Confidence            4678999999999999999999999999963    6   8999999999873 221110       0 00          


Q ss_pred             cccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866          237 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  293 (381)
Q Consensus       237 ~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  293 (381)
                       ...+.++|...+.++.+++++.++++.|.+.+.+++||++++|+++|+++..|+++
T Consensus        57 -~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  112 (113)
T cd04622          57 -TTTVGDVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR  112 (113)
T ss_pred             -cCCHHHhccCCccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence             01234457778889999999999999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.26  E-value=2.7e-10  Score=112.84  Aligned_cols=116  Identities=18%  Similarity=0.277  Sum_probs=97.0

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccc
Q 016866          154 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  233 (381)
Q Consensus       154 ~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~  233 (381)
                      .|..+++++.+++++.+|++.|.+++++++||+|++...+   +++|+++.+|++...            ....+     
T Consensus        85 ~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~---~lvGIVt~rDL~~~~------------~~~~~-----  144 (450)
T TIGR01302        85 GIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTG---KLVGIITKRDIRFVK------------DKGKP-----  144 (450)
T ss_pred             ceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCC---eEEEEEEHHHHhhhh------------cCCCC-----
Confidence            5677899999999999999999999999999997621115   799999999996411            01122     


Q ss_pred             ccccccccccccC-CCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHh
Q 016866          234 LGTWVPRIGEANG-RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  296 (381)
Q Consensus       234 ig~~~~~v~~~~~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~  296 (381)
                             +.++|. .+++++.+++++.++++.|.+++.+.+||+|++|+++|++|..|+++...
T Consensus       145 -------V~dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~  201 (450)
T TIGR01302       145 -------VSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRK  201 (450)
T ss_pred             -------HHHhhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhccc
Confidence                   344577 48999999999999999999999999999999999999999999998643

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.25  E-value=1.5e-10  Score=91.71  Aligned_cols=109  Identities=23%  Similarity=0.369  Sum_probs=90.5

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866          158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  237 (381)
Q Consensus       158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~  237 (381)
                      +++.+.+++++.+|++.|.+.+.+.+||+++    +   +++|+++..|+.+.......        ..           
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~---~~~G~v~~~dl~~~~~~~~~--------~~-----------   55 (111)
T cd04612           2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD----G---RLVGIVTLADIRRVPAEGRE--------AT-----------   55 (111)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC----C---eEEEEEEHHHHHHHHhcCcc--------cc-----------
Confidence            5678999999999999999999999999964    5   79999999999875432110        00           


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866          238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  293 (381)
Q Consensus       238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  293 (381)
                       ..+.+.|.+++.++.+++++.++++.|.+++.+.+||+|++|+++|++|..|+++
T Consensus        56 -~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  110 (111)
T cd04612          56 -VLVGDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR  110 (111)
T ss_pred             -cCHHHhccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence             1233447778999999999999999999999999999998899999999999875

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.25  E-value=8.6e-11  Score=117.27  Aligned_cols=115  Identities=14%  Similarity=0.179  Sum_probs=96.9

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccccccc
Q 016866          155 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  234 (381)
Q Consensus       155 ~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i  234 (381)
                      |..+++++.+++++.+|+++|.+++++.+||+|++...+   +++|++|..|+....            ....       
T Consensus       106 mi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~G---klvGIVT~~DL~~v~------------~~~~-------  163 (505)
T PLN02274        106 FVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGS---KLLGYVTKRDWDFVN------------DRET-------  163 (505)
T ss_pred             ccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCC---eEEEEEEHHHHhhcc------------ccCC-------
Confidence            678899999999999999999999999999997522236   899999999995410            1122       


Q ss_pred             cccccccccccCCC--ceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHh
Q 016866          235 GTWVPRIGEANGRP--FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  296 (381)
Q Consensus       235 g~~~~~v~~~~~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~  296 (381)
                           .+.++|+++  ++++.+++++.+|+++|.+++...+||+|++++++|+||++|+++...
T Consensus       164 -----~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~  222 (505)
T PLN02274        164 -----KLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKG  222 (505)
T ss_pred             -----cHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhh
Confidence                 244557766  889999999999999999999999999999999999999999999665

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.25  E-value=5.8e-11  Score=96.88  Aligned_cols=115  Identities=15%  Similarity=0.133  Sum_probs=86.2

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhh--hcccCCCCCccccCcccccccc
Q 016866          158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICR--HFKHSSSSLPILQQPVSSIQLG  235 (381)
Q Consensus       158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~--~~~~~~~~~~~~~~~i~~l~ig  235 (381)
                      +++++.+++++.+|++.|.+++.+.+||+++   .|   +++|+++..|+.+....  .....   ......        
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~---~~---~~~Giv~~~dl~~~~~~~~~~~~~---~~~~~~--------   64 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVVDS---DD---NFIGVITAVDLLGEEPIKRIQEGG---ISRSEL--------   64 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCcEEEEEcC---CC---cEEEEEEHHHHhhChhhHHHHHcC---CCchhe--------
Confidence            4678899999999999999999999999975   56   79999999999862210  00000   000111        


Q ss_pred             ccccccccccCCCceEe------cCCCCHHHHHHHHHhCCCcEEEEEcCC-CcEEEEEeHHHHHH
Q 016866          236 TWVPRIGEANGRPFAML------RPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITA  293 (381)
Q Consensus       236 ~~~~~v~~~~~~~~~~v------~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiis~~Di~~  293 (381)
                          .+.++|.+++..+      .+++++.++++.|.+++.+.+||+|++ |+++|+||.+|+++
T Consensus        65 ----~v~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~  125 (126)
T cd04640          65 ----TVADVMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR  125 (126)
T ss_pred             ----EHHHhcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence                2344466554333      368899999999999999999999986 79999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.25  E-value=2e-10  Score=90.50  Aligned_cols=111  Identities=23%  Similarity=0.457  Sum_probs=92.0

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866          158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  237 (381)
Q Consensus       158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~  237 (381)
                      +++.+.+++++.++++.|.+++.+.+||+++   ++   +++|+++..++++++........       .          
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~---~~~G~v~~~~l~~~~~~~~~~~~-------~----------   58 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDD---DG---RLVGIVTERDLLRALAEGGLDPL-------V----------   58 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECC---CC---CEEEEEeHHHHHHHHHhccCCcc-------c----------
Confidence            4677899999999999999999999999976   46   89999999999987754322110       0          


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866          238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  293 (381)
Q Consensus       238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  293 (381)
                        .+.++|..++..+.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+++
T Consensus        59 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  112 (113)
T cd02205          59 --TVGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR  112 (113)
T ss_pred             --cHHHHhcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence              022346667888999999999999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=99.25  E-value=9.9e-11  Score=96.76  Aligned_cols=110  Identities=22%  Similarity=0.325  Sum_probs=80.5

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccc-------cccHHHHHhcCCCC
Q 016866          248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLD-------EMNIHQALQLGQDA  320 (381)
Q Consensus       248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~-------~~~v~~~l~~~~~~  320 (381)
                      ++.++.+++++.+|++.|.+++++++||+|++|+++|+++..|+++.............       ...+.++.....  
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--   79 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGI--   79 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhh--
Confidence            56789999999999999999999999999999999999999999986543221110000       001112111000  


Q ss_pred             CCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCC
Q 016866          321 NPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAG  361 (381)
Q Consensus       321 ~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~  361 (381)
                        -.+.|..+++++.+++++.+|++.|.+++++++||+|++
T Consensus        80 --~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~  118 (133)
T cd04592          80 --SYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG  118 (133)
T ss_pred             --hhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence              001245678999999999999999999999999999953

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.25  E-value=1.9e-10  Score=91.43  Aligned_cols=110  Identities=21%  Similarity=0.387  Sum_probs=89.2

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866          158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  237 (381)
Q Consensus       158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~  237 (381)
                      +++++.+++++.++++.|.+.+.+.+||+++    +   +++|+++..++++++......      ....          
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~---~~~G~v~~~dl~~~~~~~~~~------~~~~----------   58 (112)
T cd04802           2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN----E---KPVGIITERDLVKKVVSRNLK------PREV----------   58 (112)
T ss_pred             CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC----C---EEEEEEEHHHHHHHHhhccCC------cccC----------
Confidence            4677899999999999999999999999964    3   699999999999865421100      0111          


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866          238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  293 (381)
Q Consensus       238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  293 (381)
                        .+.++|.+++.++.+++++.++++.|.+++...+||+|++ +++|+++.+|+++
T Consensus        59 --~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~  111 (112)
T cd04802          59 --PVGEVMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM  111 (112)
T ss_pred             --CHHHhcCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence              2334477788899999999999999999999999999865 9999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.24  E-value=1.5e-10  Score=90.88  Aligned_cols=102  Identities=19%  Similarity=0.394  Sum_probs=86.5

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866          158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  237 (381)
Q Consensus       158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~  237 (381)
                      +++.+.+++++.++++.|.+++.+.+||+++    +   +++|+++..++++..             ...+         
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~Giv~~~~l~~~~-------------~~~~---------   52 (105)
T cd04599           2 DPITIDPLDSVGRAARLMEKHRIGGLPVVED----G---KLVGIITSRDVRRAH-------------PNRL---------   52 (105)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEEC----C---EEEEEEehHHhhccc-------------ccCC---------
Confidence            4677899999999999999999999999953    5   799999999997621             0111         


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHH
Q 016866          238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT  292 (381)
Q Consensus       238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~  292 (381)
                         +.++|..++.++.+++++.++++.|.+++...+||+|+ |+++|++|..|++
T Consensus        53 ---~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~  103 (105)
T cd04599          53 ---VADAMTREVVTISPEASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIA  103 (105)
T ss_pred             ---HHHHccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhc
Confidence               23446778899999999999999999999999999996 9999999999986

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.24  E-value=1.7e-10  Score=91.66  Aligned_cols=109  Identities=14%  Similarity=0.235  Sum_probs=88.8

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866          158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  237 (381)
Q Consensus       158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~  237 (381)
                      +.+.+.+++++.+|++.|.+++...+||+++    |   +++|+++..++++.+.....       ...           
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~G~v~~~~l~~~~~~~~~-------~~~-----------   56 (111)
T cd04589           2 PPLIVDASTSIRDAARLMREHGADALLVRDG----D---PRLGIVTRTDLLDAVLLDGL-------PSS-----------   56 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEecC----C---eEEEEEEHHHHHHHHHcCCC-------CCC-----------
Confidence            3568899999999999999999999999953    5   69999999999885532100       011           


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866          238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  293 (381)
Q Consensus       238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  293 (381)
                       ..+.++|.+++..+.+++++.++++.|.+++...+||+|+ |+++|++|..|+++
T Consensus        57 -~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~  110 (111)
T cd04589          57 -TPVGEIATFPLITVDPDDFLFNALLLMTRHRIHRVVVREG-GEVVGVLEQTDLLS  110 (111)
T ss_pred             -CCHHHHhCCCcEEECCCCcHHHHHHHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence             1233457778899999999999999999999999999984 89999999999875

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=99.24  E-value=1e-10  Score=92.70  Aligned_cols=102  Identities=16%  Similarity=0.252  Sum_probs=84.5

Q ss_pred             eCCCCCHHHHHHHHHhCC-----cceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccccccccc
Q 016866          162 AGPYDSLKEVALKILQNK-----VATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  236 (381)
Q Consensus       162 v~~~~sl~~a~~~m~~~~-----i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~  236 (381)
                      +.+++++.++++.|.+++     +..+||+++   +|   +++|+++..++++.            . .+.         
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~---~~---~~~G~v~~~~l~~~------------~-~~~---------   53 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVVDE---EG---RLLGVVSLRDLLLA------------D-PDT---------   53 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEECC---CC---CEEEEEEHHHHhcC------------C-Ccc---------
Confidence            568899999999998777     478999975   46   79999999988651            0 011         


Q ss_pred             cccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHH
Q 016866          237 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL  294 (381)
Q Consensus       237 ~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l  294 (381)
                         .+++++..++..+.+++++.++++.|.+++...+||+|++|+++|+++..|+++.
T Consensus        54 ---~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~  108 (109)
T cd04606          54 ---PVSDIMDTDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV  108 (109)
T ss_pred             ---hHHHHhCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence               2334467788999999999999999999999999999988999999999999864

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=99.23  E-value=2e-10  Score=90.38  Aligned_cols=105  Identities=20%  Similarity=0.431  Sum_probs=88.3

Q ss_pred             CCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccccccccc
Q 016866          157 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  236 (381)
Q Consensus       157 ~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~  236 (381)
                      ++++++.++.++.++++.|.+++...+||+++    +   +++|+++..+++..        .     ...         
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~----~---~~~g~v~~~~l~~~--------~-----~~~---------   52 (107)
T cd04610           2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDN----G---KVVGIVSARDLLGK--------D-----PDE---------   52 (107)
T ss_pred             CCcEEECCCCcHHHHHHHHHHcCCCeeeEeEC----C---EEEEEEEHHHhhcc--------C-----ccc---------
Confidence            45778999999999999998888889999953    5   79999999999751        0     011         


Q ss_pred             cccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866          237 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  293 (381)
Q Consensus       237 ~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  293 (381)
                         .++++|...+.++.+++++.++++.|.+++.+.+||++++|+++|+++..|+++
T Consensus        53 ---~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~  106 (107)
T cd04610          53 ---TVEEIMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR  106 (107)
T ss_pred             ---cHHHhCCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence               233447777889999999999999999999999999998899999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=99.22  E-value=2.1e-10  Score=114.52  Aligned_cols=115  Identities=19%  Similarity=0.183  Sum_probs=96.4

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccc
Q 016866          154 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  233 (381)
Q Consensus       154 ~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~  233 (381)
                      .+..+++++.+++++.+|+++|.+++++.+||++++..++   +++|+++.+|+.. ..           ....      
T Consensus       101 g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~g---kLvGIVt~~DL~~-~~-----------~~~~------  159 (495)
T PTZ00314        101 GFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGG---KLLGIVTSRDIDF-VK-----------DKST------  159 (495)
T ss_pred             ccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCC---eEEEEEEHHHHhh-cc-----------cCCC------
Confidence            4567889999999999999999999999999997532246   8999999999963 10           0112      


Q ss_pred             ccccccccccccCC--CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHH
Q 016866          234 LGTWVPRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  295 (381)
Q Consensus       234 ig~~~~~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~  295 (381)
                            .+.++|.+  +++++.+++++.+++++|.+++...+||+|++++++|+||++|+++..
T Consensus       160 ------~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~  217 (495)
T PTZ00314        160 ------PVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNR  217 (495)
T ss_pred             ------CHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcc
Confidence                  24455876  789999999999999999999999999999999999999999999853

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.22  E-value=1.8e-10  Score=91.01  Aligned_cols=108  Identities=19%  Similarity=0.383  Sum_probs=86.8

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866          158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  237 (381)
Q Consensus       158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~  237 (381)
                      +++++.+++++.+|++.|.+++++.+||+++    +   +++|+++..++.+++......       ...          
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~----~---~~~G~v~~~dl~~~~~~~~~~-------~~~----------   57 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD----G---RVVGSIDESDLLDALIEGKAK-------FSL----------   57 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeC----C---eeEEEEeHHHHHHHHhccccc-------cCc----------
Confidence            5678899999999999999999999999963    5   799999999999866432110       011          


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866          238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  293 (381)
Q Consensus       238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  293 (381)
                        .+.++|.+++.++.+++++.+++++|.+ . ..+||++++|+++|++|.+|+++
T Consensus        58 --~~~~~~~~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~~~~~~Gvvt~~di~~  109 (110)
T cd04609          58 --PVREVMGEPLPTVDPDAPIEELSELLDR-G-NVAVVVDEGGKFVGIITRADLLK  109 (110)
T ss_pred             --CHHHHhcCCCceeCCCCcHHHHHHHHHh-C-CceeEEecCCeEEEEEeHHHhhc
Confidence              2334466778899999999999999988 3 34788988899999999999875

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.19  E-value=2.9e-10  Score=91.61  Aligned_cols=119  Identities=16%  Similarity=0.292  Sum_probs=92.1

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866          158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  237 (381)
Q Consensus       158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~  237 (381)
                      ++.++.+++++.+|++.|.+.+...+||+|+   +|   +++|+++..++.+..........         ..++ ...+
T Consensus         2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~~~~~~~~~---------~~~~-~~~~   65 (121)
T cd04584           2 DVVTITPTTTIAEALELMREHKIRHLPVVDE---EG---RLVGIVTDRDLRDASPSPFTTLS---------EHEL-YLLL   65 (121)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcccEECC---CC---cEEEEEEHHHHHHHhhhhcccch---------hhhh-hhhc
Confidence            4678899999999999999999999999976   56   89999999999875432211100         0000 0011


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866          238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  293 (381)
Q Consensus       238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  293 (381)
                      ...+.++|..++.++.+++++.++++.|.+.+.+.+||+++ |+++|+++..|+++
T Consensus        66 ~~~v~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~  120 (121)
T cd04584          66 KMPVKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR  120 (121)
T ss_pred             CcCHHHHhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence            12344557778899999999999999999999999999986 99999999999875

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=99.19  E-value=3.2e-10  Score=89.16  Aligned_cols=100  Identities=18%  Similarity=0.293  Sum_probs=84.7

Q ss_pred             eEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccccc
Q 016866          160 VQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVP  239 (381)
Q Consensus       160 i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~~~  239 (381)
                      +++.+++++.+|++.|.+.+.+.+||+++    |   +++|+++..++.+...              .+           
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~G~v~~~~l~~~~~--------------~~-----------   51 (104)
T cd04594           4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY----N---KFLGAVYLKDIENATY--------------GD-----------   51 (104)
T ss_pred             eEECCCCCHHHHHHHHHHcCCcEEEEEEC----C---EEEEEEEHHHHhhhcc--------------cc-----------
Confidence            56789999999999999999999999963    5   7999999999976210              11           


Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866          240 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  293 (381)
Q Consensus       240 ~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  293 (381)
                       +.++|..++.++.++.++.++++.|.+++.+.+||+| +|+++|++|.+|++.
T Consensus        52 -~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~  103 (104)
T cd04594          52 -VVDYIVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD  103 (104)
T ss_pred             -hhhhhhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence             2233666788999999999999999999999999998 699999999999875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>PRK11573 hypothetical protein; Provisional

Probab=99.19  E-value=4.8e-10  Score=109.78  Aligned_cols=122  Identities=13%  Similarity=0.224  Sum_probs=99.8

Q ss_pred             ccccccCC--CceEecCCCCHHHHHHHHHhCCCcEEEEEcC-CCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhc
Q 016866          240 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDD-NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  316 (381)
Q Consensus       240 ~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~  316 (381)
                      +++++|.+  ++.+++.++++.++++.+.+++++++||.++ .+.++|++..+|++.....+.       +.......+ 
T Consensus       188 ~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~-------~~~~~~l~~-  259 (413)
T PRK11573        188 TVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKK-------EFTKENMLR-  259 (413)
T ss_pred             ChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhccC-------cCCHHHHHh-
Confidence            55667864  6899999999999999999999999999976 378999999999987543211       011221111 


Q ss_pred             CCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866          317 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  380 (381)
Q Consensus       317 ~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~  380 (381)
                               ++ +++..++++.++.++++.|.+++.|-..|+| +.|...|+||..||+..++|
T Consensus       260 ---------~~-r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvD-EyG~~~GiVTleDilEeivG  312 (413)
T PRK11573        260 ---------AA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVD-EYGDIQGLVTVEDILEEIVG  312 (413)
T ss_pred             ---------hc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEe-cCCCeEEEeeHHHHHHHHhC
Confidence                     22 3688999999999999999999999999999 58999999999999999986

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=99.19  E-value=2.6e-10  Score=111.30  Aligned_cols=122  Identities=17%  Similarity=0.266  Sum_probs=106.2

Q ss_pred             cccCCCCCCCCCCCceEeCCCCCHHHHHHHHHh-----CCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCC
Q 016866          145 KRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQ-----NKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSS  219 (381)
Q Consensus       145 ~~~~~~~g~~~~~~~i~v~~~~sl~~a~~~m~~-----~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~  219 (381)
                      +|..+.+|+.|...++++.++.|+.+|+..+.+     ..+..+.|+|.   ++   ++.|+++.++++.          
T Consensus       128 ~y~e~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~---~~---~L~Gvvsl~~Ll~----------  191 (451)
T COG2239         128 SYPEDTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDE---KG---KLLGVVSLRDLLT----------  191 (451)
T ss_pred             CCChhhhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECC---cc---ceEEEeeHHHHhc----------
Confidence            389999999999999999999999999999874     34788999976   56   8999999999985          


Q ss_pred             CCCccccCccccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 016866          220 SSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  297 (381)
Q Consensus       220 ~~~~~~~~~i~~l~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~  297 (381)
                         ...+.+            +.++|.+.++++.+++...++.+.+.+++.-++||||++++++|++|..|++..+.+
T Consensus       192 ---a~~~~~------------i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~e  254 (451)
T COG2239         192 ---AEPDEL------------LKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEE  254 (451)
T ss_pred             ---CCcHhH------------HHHHhcccceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHHH
Confidence               112223            344588889999999999999999999999999999999999999999999997664

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.17  E-value=1.8e-10  Score=118.02  Aligned_cols=119  Identities=16%  Similarity=0.259  Sum_probs=98.7

Q ss_pred             CCCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccccc
Q 016866          153 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  232 (381)
Q Consensus       153 ~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l  232 (381)
                      +.|.++..++++++++.++++.|.+++.+.+||+|+   ++   +++|+++.+|+.+.+......       ..      
T Consensus       451 dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~---~g---~lvGiVt~~dL~~~l~~~~~~-------~~------  511 (574)
T PRK01862        451 ELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDD---DG---RFRGAVALKDITSDLLDKRDT-------TD------  511 (574)
T ss_pred             HHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcC---CC---eEEEEEEHHHHHHHhhccccc-------cc------
Confidence            367888899999999999999999999999999976   56   899999999998854321100       01      


Q ss_pred             cccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCC--CcEEEEEeHHHHHHHHh
Q 016866          233 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN--DSLLDIYSRSDITALAK  296 (381)
Q Consensus       233 ~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--g~lvGiis~~Di~~l~~  296 (381)
                            ..+.++|.+++.++++++++.++++.|.+++.+.+||+|++  ++++|++|++|+++...
T Consensus       512 ------~~v~dim~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~  571 (574)
T PRK01862        512 ------KTAADYAHTPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYR  571 (574)
T ss_pred             ------chHHHhccCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHH
Confidence                  12345588889999999999999999999999999999876  58999999999998654

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.16  E-value=6.1e-10  Score=93.08  Aligned_cols=126  Identities=25%  Similarity=0.466  Sum_probs=95.8

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcc-c---CCCCCccccCcccccc
Q 016866          158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK-H---SSSSLPILQQPVSSIQ  233 (381)
Q Consensus       158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~-~---~~~~~~~~~~~i~~l~  233 (381)
                      +++++.+++++.+|++.|.+++++.+||+++    +   +++|+++..++++++..... .   .+........++.++ 
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~----~---~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   73 (143)
T cd04634           2 NPITCNADDTISDAARLLRENKISGAPVLDG----G---KLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREF-   73 (143)
T ss_pred             CcEEecCCCCHHHHHHHHHHcCCCcceEeEC----C---eEEEEecHHHHHHHHHhccCccccccCCcceeeeccchhe-
Confidence            5678999999999999999999999999963    5   79999999999987753321 0   001111122222221 


Q ss_pred             cccc-----------ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866          234 LGTW-----------VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  293 (381)
Q Consensus       234 ig~~-----------~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  293 (381)
                       ..|           ...+.++|..++.++.+++++.++++.|.+.+.+.+||+++ |+++|+++.+|++.
T Consensus        74 -~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~  142 (143)
T cd04634          74 -INWEETKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE  142 (143)
T ss_pred             -eehHHHHHHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence             111           12355678888999999999999999999999999999987 99999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=99.15  E-value=2.7e-10  Score=105.58  Aligned_cols=109  Identities=16%  Similarity=0.226  Sum_probs=91.6

Q ss_pred             CCCCCC-ceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccc
Q 016866          153 RPCPRP-LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  231 (381)
Q Consensus       153 ~~~~~~-~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~  231 (381)
                      .+|.++ ++.+.+++++.+|++.|.+.+.+.+||+|+   +|   +++|+++..|+.+++....        ....    
T Consensus       159 ~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~---~g---~~~Givt~~dl~~~~~~~~--------~~~~----  220 (268)
T TIGR00393       159 DLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDE---NN---QLVGVFTDGDLRRALLGGG--------SLKS----  220 (268)
T ss_pred             HHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeC---CC---CEEEEEEcHHHHHHHhcCC--------cccC----
Confidence            367777 899999999999999999999999999976   56   8999999999988543110        0112    


Q ss_pred             ccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEe
Q 016866          232 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYS  287 (381)
Q Consensus       232 l~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis  287 (381)
                              .+.++|.+++.++.+++++.+|++.|.+++...+||+|++|+++|+|+
T Consensus       221 --------~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~  268 (268)
T TIGR00393       221 --------EVRDFMTLGPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH  268 (268)
T ss_pred             --------cHHHhCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence                    244558888999999999999999999999999999998899999985

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=99.13  E-value=7.9e-10  Score=87.30  Aligned_cols=102  Identities=15%  Similarity=0.179  Sum_probs=86.3

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866          158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  237 (381)
Q Consensus       158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~  237 (381)
                      ....+.+++++.++.+.|.+.+...+||+++...+|   +++|+++..++.+....                        
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~---~~~G~v~~~dl~~~~~~------------------------   55 (105)
T cd04591           3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESP---RLVGYILRSQLVVALKN------------------------   55 (105)
T ss_pred             ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCC---EEEEEEeHHHHHHHHHH------------------------
Confidence            456789999999999999999889999996411136   79999999999875421                        


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866          238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  293 (381)
Q Consensus       238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  293 (381)
                            +|..++.++.+++++.++++.|.+++.+.+||++ +|+++|+++.+|+++
T Consensus        56 ------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~  104 (105)
T cd04591          56 ------YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK  104 (105)
T ss_pred             ------hccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhc
Confidence                  2555788999999999999999999999999995 799999999999875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.08  E-value=1.4e-09  Score=87.42  Aligned_cols=113  Identities=12%  Similarity=0.193  Sum_probs=87.8

Q ss_pred             CceEeCCCCCHHHHHHHHHhCC-cceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccccccccc
Q 016866          158 PLVQAGPYDSLKEVALKILQNK-VATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  236 (381)
Q Consensus       158 ~~i~v~~~~sl~~a~~~m~~~~-i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~  236 (381)
                      ++.++.+++++.+|++.|.+++ .+.+||+++    |   +++|+++..++++++......     ...           
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~----~---~~~G~v~~~~l~~~~~~~~~~-----~~~-----------   58 (119)
T cd04598           2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD----G---RPVGLIMREALMELLSTPYGR-----ALY-----------   58 (119)
T ss_pred             CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC----C---eeEEEEEHHHHHHHHhchhhH-----HHH-----------
Confidence            4567889999999999998877 899999963    5   799999999998755421100     000           


Q ss_pred             cccccccccCCCceEecCCCCHHHHHHHHHhCCCc---EEEEEcCCCcEEEEEeHHHHHH
Q 016866          237 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVS---SIPIVDDNDSLLDIYSRSDITA  293 (381)
Q Consensus       237 ~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~---~lpVvd~~g~lvGiis~~Di~~  293 (381)
                      ....++++|..++.++.+++++.++++.|.+++..   ..||++++|+++|++|..|+++
T Consensus        59 ~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~  118 (119)
T cd04598          59 GKKPVSEVMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR  118 (119)
T ss_pred             cCCcHHHhcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence            01134556888899999999999999999988753   4578888899999999999864

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.06  E-value=3.3e-09  Score=83.41  Aligned_cols=104  Identities=21%  Similarity=0.368  Sum_probs=86.0

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866          158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  237 (381)
Q Consensus       158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~  237 (381)
                      ++.++.+++++.+++..|.+.+.+.+||+++   .+   +++|+++..+++...    .         ..+         
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~---~~~g~v~~~~l~~~~----~---------~~~---------   53 (106)
T cd04638           2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKK---SG---ELVGIITRKDLLRNP----E---------EEQ---------   53 (106)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCeEEEEcC---CC---cEEEEEEHHHHHhcc----c---------cch---------
Confidence            4678889999999999999989999999975   46   799999999997510    0         011         


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866          238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  293 (381)
Q Consensus       238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  293 (381)
                         +.++|..++.++.+++++.++++.|.+.+.+.+||+| +|+++|+++..|+++
T Consensus        54 ---~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~~~~~G~it~~d~~~  105 (106)
T cd04638          54 ---LALLMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVD-DGKLVGIVTVADIVR  105 (106)
T ss_pred             ---HHHHhcCCCceECCCCCHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHhhc
Confidence               2233666788899999999999999999999999998 479999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=99.06  E-value=1.1e-09  Score=100.66  Aligned_cols=112  Identities=14%  Similarity=0.256  Sum_probs=96.8

Q ss_pred             CCC--CCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccc
Q 016866          154 PCP--RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  231 (381)
Q Consensus       154 ~~~--~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~  231 (381)
                      +|.  .....+.+++++.+-.++-.+.|.+|+||+|.   ..   +++|++|.+|++..             .-+.++  
T Consensus       193 i~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~---~~---kvvGvVt~rDv~~~-------------~~~t~i--  251 (432)
T COG4109         193 IMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNR---SM---KVVGVVTMRDVLDK-------------KPSTTI--  251 (432)
T ss_pred             hccccccceeccccccHHHHHHHHHHcCCCccceecc---cc---eEEEEEEehhhhcC-------------CCCccH--
Confidence            444  66778899999999999999999999999987   45   89999999999761             112233  


Q ss_pred             ccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHh
Q 016866          232 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  296 (381)
Q Consensus       232 l~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~  296 (381)
                                ..+|+++++++.+.+++..+.++|.-.++.-+||+|++.+++|++|++|+++.+.
T Consensus       252 ----------eKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq  306 (432)
T COG4109         252 ----------EKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQ  306 (432)
T ss_pred             ----------HHHhccCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHH
Confidence                      3449999999999999999999999999999999999999999999999998665

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=99.06  E-value=2.1e-09  Score=106.17  Aligned_cols=120  Identities=18%  Similarity=0.324  Sum_probs=99.2

Q ss_pred             ccccccCC--CceEecCCCCHHHHHHHHHhCCCcEEEEEc-CCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhc
Q 016866          240 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVD-DNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  316 (381)
Q Consensus       240 ~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~  316 (381)
                      .++++|.+  ++..++.+.++.++.+.+.+++++++||++ +.+.++|++..+|++.....+.. .     .....    
T Consensus       207 ~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~-~-----~~~~~----  276 (429)
T COG1253         207 TVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS-D-----LDLRV----  276 (429)
T ss_pred             EeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc-c-----cchhh----
Confidence            34455754  688899999999999999999999999999 56799999999999996653321 0     11111    


Q ss_pred             CCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866          317 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  380 (381)
Q Consensus       317 ~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~  380 (381)
                               .. .++..++++.++.++++.|.+.+.|-..|+| +.|.+.|+||..||+..++|
T Consensus       277 ---------~~-~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvD-EyG~~~GlVTleDIiEeIvG  329 (429)
T COG1253         277 ---------LV-RPPLFVPETLSLSDLLEEFREERTHMAIVVD-EYGGVEGLVTLEDIIEEIVG  329 (429)
T ss_pred             ---------cc-cCCeEecCCCcHHHHHHHHHHhCCeEEEEEE-cCCCeEEEeEHHHHHHHHhC
Confidence                     11 2688999999999999999999999999999 58999999999999999987

>PRK11573 hypothetical protein; Provisional

Probab=99.04  E-value=9.2e-09  Score=100.80  Aligned_cols=165  Identities=18%  Similarity=0.197  Sum_probs=122.4

Q ss_pred             hhCcccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeecccCCCCcEEEEeehHHHHHHHHHhccCCCCCChhHHhhc
Q 016866           51 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETH  130 (381)
Q Consensus        51 ~~~~~~d~~p~s~~vi~ld~~~~v~~A~~~l~~~~i~~~pV~d~~~~~~vGilt~~D~~~il~~~~~~~~~~~~~~l~~~  130 (381)
                      ++.++.|+|-+-.+++.++.+.|+.++++.+.+.+.+..||++.+..+++|++..+|++..+..   . ...        
T Consensus       185 ~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~---~-~~~--------  252 (413)
T PRK11573        185 EKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTE---K-KEF--------  252 (413)
T ss_pred             CCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhc---c-CcC--------
Confidence            4688999998889999999999999999999999999999998877789999999999864321   0 011        


Q ss_pred             cHHHHHHHHHhhhccccCCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHH
Q 016866          131 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  210 (381)
Q Consensus       131 ~i~~~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~  210 (381)
                      ....+.+                 ..+++..|+++.++.++++.|.+++.|-..|+|+   -|   ...|++|..||+..
T Consensus       253 ~~~~l~~-----------------~~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDE---yG---~~~GiVTleDilEe  309 (413)
T PRK11573        253 TKENMLR-----------------AADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDE---YG---DIQGLVTVEDILEE  309 (413)
T ss_pred             CHHHHHh-----------------hccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEec---CC---CeEEEeeHHHHHHH
Confidence            0111111                 1357889999999999999999999999999987   67   79999999999998


Q ss_pred             HhhhcccCCCCCccccCccccccccccccccccccCCCceEecCCCCHHHHHHHH
Q 016866          211 ICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALL  265 (381)
Q Consensus       211 l~~~~~~~~~~~~~~~~~i~~l~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m  265 (381)
                      +.........  ......+...+-             ..+.++...++.+..+.+
T Consensus       310 ivGei~de~d--~~~~~~i~~~~~-------------~~~~v~G~~~l~d~~~~l  349 (413)
T PRK11573        310 IVGDFTTSMS--PTLAEEVTPQND-------------GSVIIDGTANVREINKAF  349 (413)
T ss_pred             HhCCCCcccC--cccccceEEecC-------------CEEEEEeeeEHHHHHHHh
Confidence            8765543210  000111222222             234567777777777766

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=99.03  E-value=1.6e-09  Score=105.86  Aligned_cols=117  Identities=17%  Similarity=0.277  Sum_probs=101.7

Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhC-----CCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHH
Q 016866          238 VPRIGEANGRPFAMLRPTASLGSALALLVQA-----DVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQ  312 (381)
Q Consensus       238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~-----~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~  312 (381)
                      ..++|..|...++++.++.|+.+++..+.+.     .+..+.|+|++++++|+++.++++..-.          +..+.+
T Consensus       131 e~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a~~----------~~~i~~  200 (451)
T COG2239         131 EDTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTAEP----------DELLKD  200 (451)
T ss_pred             hhhhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhcCCc----------HhHHHH
Confidence            3467788999999999999999999999843     5678999999999999999999886221          234555


Q ss_pred             HHhcCCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 016866          313 ALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  378 (381)
Q Consensus       313 ~l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l  378 (381)
                                   +|.+.++++.+++..+++.+.+.+++.-.+|||| ++++++|+||..|++..+
T Consensus       201 -------------im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd-~~~~LiG~itiDDiidvi  252 (451)
T COG2239         201 -------------LMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVD-EDNRLIGIITIDDIIDVI  252 (451)
T ss_pred             -------------HhcccceeecccCCHHHHHHHHHHhCCeecceEC-CCCceeeeeeHHHHHHHH
Confidence                         6777899999999999999999999999999999 479999999999998765

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=99.01  E-value=2.7e-09  Score=106.53  Aligned_cols=116  Identities=12%  Similarity=0.215  Sum_probs=92.7

Q ss_pred             CCCCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccc
Q 016866          152 GRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  231 (381)
Q Consensus       152 g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~  231 (381)
                      +.+|.+++.++.+++++.+|++.|.+++++.+||+|+   ++   +++|+++..|+++.+.....       ....    
T Consensus       338 ~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~~-------~~~~----  400 (454)
T TIGR01137       338 KDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTE---AG---KVLGSVTLRELLSALFAGKA-------NPDD----  400 (454)
T ss_pred             HHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---eEEEEEEHHHHHHHHhccCC-------CcCC----
Confidence            3478889999999999999999999999999999975   56   79999999999986542110       0111    


Q ss_pred             ccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHH
Q 016866          232 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  295 (381)
Q Consensus       232 l~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~  295 (381)
                              .+.++|.+++.++.+++++.++++.|.+++   .|+|+++|+++|+||.+|+++.+
T Consensus       401 --------~v~~im~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~~g~liGvvt~~dll~~l  453 (454)
T TIGR01137       401 --------AVSKVMSKKFIQIGEGEKLSDLSKFLEKNS---SAIVTEEGKPIGVVTKIDLLSFL  453 (454)
T ss_pred             --------CHHHhcCCCCeEECCcCcHHHHHHHHHHCC---eeEEEECCEEEEEEEHHHHHHhh
Confidence                    234457778889999999999999998764   35555579999999999998853

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=98.99  E-value=4.8e-09  Score=86.66  Aligned_cols=113  Identities=19%  Similarity=0.179  Sum_probs=79.5

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCC-cccc---Ccccccc
Q 016866          158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSL-PILQ---QPVSSIQ  233 (381)
Q Consensus       158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~-~~~~---~~i~~l~  233 (381)
                      .++++.+++++.+|++.|.+++.+.+||+|+   +|   +++|++|..|+++++........... ....   ..+.++.
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~---~g---~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~   75 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDS---DD---FLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVC   75 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECC---CC---eEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHh
Confidence            4688999999999999999999999999976   56   89999999999997753221100000 0000   0000010


Q ss_pred             ccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCC
Q 016866          234 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN  279 (381)
Q Consensus       234 ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~  279 (381)
                         -...+.+.|..+++++.+++++.+|++.|.+++++++||+|++
T Consensus        76 ---~~~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~  118 (133)
T cd04592          76 ---TKGISYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG  118 (133)
T ss_pred             ---hhhhhhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence               0001112245678999999999999999999999999999864

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>PF00571 CBS: CBS domain CBS domain web page

Probab=98.98  E-value=1.5e-09  Score=75.47  Aligned_cols=55  Identities=31%  Similarity=0.509  Sum_probs=51.5

Q ss_pred             ccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHh
Q 016866          242 GEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  296 (381)
Q Consensus       242 ~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~  296 (381)
                      +++|.++++++.+++++.++++.|.+++++++||+|++|+++|++|.+|+++++.
T Consensus         2 ~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~   56 (57)
T PF00571_consen    2 GDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALL   56 (57)
T ss_dssp             HHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHH
T ss_pred             eECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhh
Confidence            5678889999999999999999999999999999999999999999999998653

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>PF00571 CBS: CBS domain CBS domain web page

Probab=98.97  E-value=1.8e-09  Score=75.16  Aligned_cols=54  Identities=28%  Similarity=0.413  Sum_probs=50.5

Q ss_pred             cCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866          326 FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  380 (381)
Q Consensus       326 ~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~  380 (381)
                      +|.++++++++++++.++++.|.+++++++||+|+ +|+++|+||.+||++++++
T Consensus         4 ~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~-~~~~~G~is~~dl~~~l~~   57 (57)
T PF00571_consen    4 IMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDE-DGKLVGIISRSDLLKALLD   57 (57)
T ss_dssp             HSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEEST-TSBEEEEEEHHHHHHHHHG
T ss_pred             CCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEec-CCEEEEEEEHHHHHhhhhC
Confidence            67778999999999999999999999999999994 7999999999999999864

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.81  E-value=2.6e-07  Score=89.02  Aligned_cols=110  Identities=16%  Similarity=0.241  Sum_probs=91.1

Q ss_pred             CCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCccc
Q 016866          247 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF  326 (381)
Q Consensus       247 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~  326 (381)
                      .......++.+..++++.|...+...+.|+|+++++.|.++..++.......         .++.+             .
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---------~~~~~-------------~  307 (363)
T TIGR01186       250 TGPITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIKQARKKA---------QGLQD-------------V  307 (363)
T ss_pred             ccceeecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHHHHhhcC---------Cchhh-------------h
Confidence            3444566778899999999999999999999999999999999988755421         12333             2


Q ss_pred             CCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866          327 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  380 (381)
Q Consensus       327 m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~  380 (381)
                      +.....++.++++|.+++..|.+++.. +||+|+ +|+++|+||..++++++.+
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~~g~i~~~~~~~~~~~  359 (363)
T TIGR01186       308 LIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDE-DQRLVGIVTRGSLVDALYD  359 (363)
T ss_pred             hccCCceECCCCcHHHHHHHHHhCCCC-EEEECC-CCcEEEEEEHHHHHHHHHh
Confidence            234567999999999999999999998 999994 7999999999999999864

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=98.76  E-value=3.2e-07  Score=90.67  Aligned_cols=129  Identities=19%  Similarity=0.320  Sum_probs=106.9

Q ss_pred             hhCcccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeecccCCCCcEEEEeehHHHHHHHHHhccCCCCCChhHHhhc
Q 016866           51 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETH  130 (381)
Q Consensus        51 ~~~~~~d~~p~s~~vi~ld~~~~v~~A~~~l~~~~i~~~pV~d~~~~~~vGilt~~D~~~il~~~~~~~~~~~~~~l~~~  130 (381)
                      .+.++.++|-+..+++.++.+.++.++...+.+.+.+..||++.....++|++..+|++.....-..   ...       
T Consensus       204 ~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~---~~~-------  273 (429)
T COG1253         204 DDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS---DLD-------  273 (429)
T ss_pred             CCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc---ccc-------
Confidence            4688899998888999999999999999999999999999999667789999999999875532110   000       


Q ss_pred             cHHHHHHHHHhhhccccCCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHH
Q 016866          131 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  210 (381)
Q Consensus       131 ~i~~~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~  210 (381)
                       ..                    ..-.+++.|+++.++.++++.|.+.+.|-..|+|+   -|   .+.|++|..||+..
T Consensus       274 -~~--------------------~~~~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDE---yG---~~~GlVTleDIiEe  326 (429)
T COG1253         274 -LR--------------------VLVRPPLFVPETLSLSDLLEEFREERTHMAIVVDE---YG---GVEGLVTLEDIIEE  326 (429)
T ss_pred             -hh--------------------hcccCCeEecCCCcHHHHHHHHHHhCCeEEEEEEc---CC---CeEEEeEHHHHHHH
Confidence             00                    01237899999999999999999999999999987   57   79999999999998


Q ss_pred             Hhhhcc
Q 016866          211 ICRHFK  216 (381)
Q Consensus       211 l~~~~~  216 (381)
                      +.....
T Consensus       327 IvGei~  332 (429)
T COG1253         327 IVGEIP  332 (429)
T ss_pred             HhCCCc
Confidence            876554

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.66  E-value=3.6e-07  Score=89.12  Aligned_cols=105  Identities=17%  Similarity=0.191  Sum_probs=87.4

Q ss_pred             ecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccCCCcc
Q 016866          252 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRC  331 (381)
Q Consensus       252 v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m~~~~  331 (381)
                      ..++.+..+++..|...+.+.++|+|++++++|+++..++......+         .++.++             +....
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---------~~~~~~-------------~~~~~  347 (400)
T PRK10070        290 KTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTALTQQ---------QGLDAA-------------LIDAP  347 (400)
T ss_pred             cCCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHHhhhhcC---------Cchhhh-------------hccCC
Confidence            34667889999999999999999999999999999999997754421         123332             22356


Q ss_pred             eEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866          332 QMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  380 (381)
Q Consensus       332 ~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~  380 (381)
                      .++.++++|.+++..|.+.... +||||+ +|+++|+||..++++++.+
T Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~~g~~~~~~~~~~~~~  394 (400)
T PRK10070        348 LAVDAQTPLSELLSHVGQAPCA-VPVVDE-DQQYVGIISKGMLLRALDR  394 (400)
T ss_pred             ceeCCCCCHHHHHHHHHhCCCc-EEEECC-CCcEEEEEEHHHHHHHHHh
Confidence            7999999999999999998776 999994 7999999999999999864

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=98.65  E-value=2.1e-07  Score=86.74  Aligned_cols=121  Identities=14%  Similarity=0.285  Sum_probs=101.1

Q ss_pred             ccccccCC--CceEecCCCCHHHHHHHHHhCCCcEEEEEcC-CCcEEEEEeHHHHHHHHhhhh-hcccccccccHHHHHh
Q 016866          240 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDD-NDSLLDIYSRSDITALAKDKA-YAQIHLDEMNIHQALQ  315 (381)
Q Consensus       240 ~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGiis~~Di~~l~~~~~-~~~~~~~~~~v~~~l~  315 (381)
                      +|.|+|.+  .+..+..+++..++.+.+....+.++|+..+ -+.++|++..+|+.+++.++. +..     ..+..+. 
T Consensus       201 tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~~~k-----~d~~~~a-  274 (423)
T COG4536         201 TVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNEFTK-----EDILRAA-  274 (423)
T ss_pred             eeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCcccH-----hHHHHHh-
Confidence            67777854  6888999999999999999999999999864 356999999999999877544 222     1222221 


Q ss_pred             cCCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866          316 LGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  380 (381)
Q Consensus       316 ~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~  380 (381)
                                   .+++++++++++.+-+..|..++-|--.||| |.|.+.|+||+.||+..++|
T Consensus       275 -------------~epyFVPe~Tpl~~QL~~F~~~k~hialVVD-EYG~i~GLVTLEDIlEEIVG  325 (423)
T COG4536         275 -------------DEPYFVPEGTPLSDQLVAFQRNKKHIALVVD-EYGDIQGLVTLEDILEEIVG  325 (423)
T ss_pred             -------------cCCeecCCCCcHHHHHHHHHHhcceEEEEEe-ccCcEEeeeeHHHHHHHHhc
Confidence                         2588999999999999999999999999999 58999999999999999886

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=98.61  E-value=8.7e-08  Score=94.23  Aligned_cols=137  Identities=20%  Similarity=0.322  Sum_probs=106.0

Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCC-----CcEEEEEeHHHHHHHHhhhhhccc--ccc------
Q 016866          240 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN-----DSLLDIYSRSDITALAKDKAYAQI--HLD------  306 (381)
Q Consensus       240 ~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-----g~lvGiis~~Di~~l~~~~~~~~~--~~~------  306 (381)
                      +++++|+++++++..-+.+..+.+.+.....+.+||||+.     +++.|+|-++.++.+++++.+...  .-.      
T Consensus       583 ~a~ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~~~~~  662 (762)
T KOG0474|consen  583 TAGEVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRSTFDLPVRR  662 (762)
T ss_pred             hHhhhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccccCcchhh
Confidence            5689999999999999999999999999999999999961     589999999999998876554311  000      


Q ss_pred             cccHHHHHhcCC---------CCCC---Ccc-cCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHH
Q 016866          307 EMNIHQALQLGQ---------DANP---SLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSD  373 (381)
Q Consensus       307 ~~~v~~~l~~~~---------~~~~---~~~-~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~D  373 (381)
                      ..+..++.....         ....   ... +|+..++++.+++++..+...+.+-+.+++.||+. .++++|++|++|
T Consensus       663 ~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~-~~~~~gilTR~D  741 (762)
T KOG0474|consen  663 KFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPK-TNRVVGILTRKD  741 (762)
T ss_pred             cCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecC-CCceeEEEehhh
Confidence            112222221100         0000   111 78899999999999999999999999999999994 678899999999


Q ss_pred             HHHH
Q 016866          374 VFRF  377 (381)
Q Consensus       374 Il~~  377 (381)
                      +.++
T Consensus       742 ~~~~  745 (762)
T KOG0474|consen  742 LARY  745 (762)
T ss_pred             hhhH
Confidence            9854

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=98.59  E-value=1.9e-07  Score=81.55  Aligned_cols=112  Identities=14%  Similarity=0.383  Sum_probs=96.3

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCcEEEEEcC-CCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCccc
Q 016866          248 PFAMLRPTASLGSALALLVQADVSSIPIVDD-NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF  326 (381)
Q Consensus       248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~  326 (381)
                      ..+++..+.++.+++..+.+...|++||+.+ .+.+.|++-.+|+++++.....      ...+.+.|            
T Consensus        78 QM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~------~F~i~~lL------------  139 (293)
T COG4535          78 QMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAE------PFDIKELL------------  139 (293)
T ss_pred             HheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcc------cccHHHhc------------
Confidence            5678999999999999999999999999975 5689999999999997653321      13455533            


Q ss_pred             CCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866          327 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  380 (381)
Q Consensus       327 m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~  380 (381)
                        +|...++++-.+-..++-+...+.|...|+| +-|-+-|.||..||+..++|
T Consensus       140 --RPav~VPESKrvd~lLkeFR~~RnHMAIViD-EfGgVsGLVTIEDiLEqIVG  190 (293)
T COG4535         140 --RPAVVVPESKRVDRLLKEFRSQRNHMAIVID-EFGGVSGLVTIEDILEQIVG  190 (293)
T ss_pred             --ccceecccchhHHHHHHHHHhhcCceEEEEe-ccCCeeeeEEHHHHHHHHhc
Confidence              3688999999999999999999999999999 58999999999999999986

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=98.55  E-value=1.7e-07  Score=87.97  Aligned_cols=107  Identities=19%  Similarity=0.280  Sum_probs=92.3

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCcEEEEEcC---CCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCc
Q 016866          248 PFAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSL  324 (381)
Q Consensus       248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~  324 (381)
                      +++.+.|+.++.++++....++++.+||.++   .++++|+||.+|+-.+ .+.        ...+.+            
T Consensus       117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~-~~~--------~~~~~~------------  175 (503)
T KOG2550|consen  117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL-EDN--------SLLVSD------------  175 (503)
T ss_pred             CCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh-hcc--------cchhhh------------
Confidence            5778999999999999999999999999964   4699999999999776 211        234444            


Q ss_pred             ccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866          325 GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  377 (381)
Q Consensus       325 ~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~  377 (381)
                       +|..++++.+.+.+|.++-+.|.+++...+||||+ +|.++.+|+++|+.+.
T Consensus       176 -vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~-~gelva~~~rtDl~k~  226 (503)
T KOG2550|consen  176 -VMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDD-KGELVAMLSRTDLMKN  226 (503)
T ss_pred             -hcccccccccccccHHHHHHHHHhhhcCCcceecc-CCceeeeeehhhhhhh
Confidence             77777889999999999999999999999999994 7999999999999874

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=98.49  E-value=2.3e-06  Score=79.91  Aligned_cols=130  Identities=22%  Similarity=0.333  Sum_probs=107.4

Q ss_pred             hCcccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeecccCCCCcEEEEeehHHHHHHHHHhccCCCCCChhHHhhcc
Q 016866           52 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT  131 (381)
Q Consensus        52 ~~~~~d~~p~s~~vi~ld~~~~v~~A~~~l~~~~i~~~pV~d~~~~~~vGilt~~D~~~il~~~~~~~~~~~~~~l~~~~  131 (381)
                      .-|+.|+|-....+..+|.++|.++..+.+...-...+|+|..+-.+++|++-++|+++.+.+..+    .+.+++    
T Consensus       199 ~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~----~~k~d~----  270 (423)
T COG4536         199 NLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNE----FTKEDI----  270 (423)
T ss_pred             cceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCc----ccHhHH----
Confidence            467889988788999999999999999999999999999998887789999999999887753211    222221    


Q ss_pred             HHHHHHHHHhhhccccCCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHH
Q 016866          132 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI  211 (381)
Q Consensus       132 i~~~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l  211 (381)
                              ..             ...+++.|+..+++.+-+..|.+++-|-..|+|+   -|   .+.|++|..||+.-+
T Consensus       271 --------~~-------------~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDE---YG---~i~GLVTLEDIlEEI  323 (423)
T COG4536         271 --------LR-------------AADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDE---YG---DIQGLVTLEDILEEI  323 (423)
T ss_pred             --------HH-------------HhcCCeecCCCCcHHHHHHHHHHhcceEEEEEec---cC---cEEeeeeHHHHHHHH
Confidence                    11             1246789999999999999999999999999987   67   899999999999977


Q ss_pred             hhhcc
Q 016866          212 CRHFK  216 (381)
Q Consensus       212 ~~~~~  216 (381)
                      ...+.
T Consensus       324 VGdft  328 (423)
T COG4536         324 VGDFT  328 (423)
T ss_pred             hcccc
Confidence            75554

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=98.46  E-value=1.9e-06  Score=81.06  Aligned_cols=166  Identities=16%  Similarity=0.206  Sum_probs=119.1

Q ss_pred             HcCCCeeecccCCCCcEEEEeehHHHHHHHHHhccCC---CCCChhHHhhccHHHHHHHHHhhhccccCCCCCCCCCCCc
Q 016866           83 EQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNG---SNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPL  159 (381)
Q Consensus        83 ~~~i~~~pV~d~~~~~~vGilt~~D~~~il~~~~~~~---~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~  159 (381)
                      .+.....|++.+    ...-+|..+....+..++..+   .+-+.++ ....+..|+.....             ...++
T Consensus        57 r~itl~tPlvsS----pMDTVtes~MAiaMAl~ggIg~IHhNctpe~-QA~~v~~vK~~~~g-------------~~~~p  118 (503)
T KOG2550|consen   57 RNITLNTPLVSS----PMDTVTESEMAIAMALLGGIGFIHHNCTPED-QADMVRRVKNYENG-------------FINNP  118 (503)
T ss_pred             hcccccCceecc----CCcccchhHHHHHHHhcCCceeeecCCCHHH-HHHHHHHHHHhhcc-------------cccCC
Confidence            344455587754    445678888877766554321   1222221 12234445544332             23567


Q ss_pred             eEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccccc
Q 016866          160 VQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVP  239 (381)
Q Consensus       160 i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~~~  239 (381)
                      +.+.|+.++.++++.-..+++..+||.....-.+   +++|++|-+|+ .|+.++           ..            
T Consensus       119 ~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~---KLvG~vtsrdi-~f~~~~-----------~~------------  171 (503)
T KOG2550|consen  119 IVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGS---KLVGIITSRDI-QFLEDN-----------SL------------  171 (503)
T ss_pred             cccCCcccchhhhhhcccccccccccccCCcccc---eeEEEEehhhh-hhhhcc-----------cc------------
Confidence            8899999999999999999999999997533334   89999999999 444211           11            


Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866          240 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  293 (381)
Q Consensus       240 ~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  293 (381)
                      .+.++|.+..++.+...++.++-+++.+.+...+||||++|+++.++++.|+.+
T Consensus       172 ~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k  225 (503)
T KOG2550|consen  172 LVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMK  225 (503)
T ss_pred             hhhhhcccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhh
Confidence            233457777789999999999999999999999999999999999999999987

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.45  E-value=3.8e-06  Score=80.96  Aligned_cols=109  Identities=10%  Similarity=0.192  Sum_probs=88.6

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866          158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  237 (381)
Q Consensus       158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~  237 (381)
                      ..+...++.+..+++..|...+...+.|++.   .+   ++.|.++..++..+.....            .+        
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~g~~~~~~~~~~~~~~~------------~~--------  304 (363)
T TIGR01186       251 GPITKTADKGPRSALQLMRDERVDSLYVVDR---QN---KLVGVVDVESIKQARKKAQ------------GL--------  304 (363)
T ss_pred             cceeecCCCCHHHHHHHHHhcCCceEEEEcC---CC---CEEEEEeHHHHHHHhhcCC------------ch--------
Confidence            3445667788999999999999999999976   55   7999999999987553210            11        


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 016866          238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  297 (381)
Q Consensus       238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~  297 (381)
                          .+.+...+.++.+++++.+++..|.+++.. +||+|++|+++|+|+..+++..+..
T Consensus       305 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~  359 (363)
T TIGR01186       305 ----QDVLIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALYD  359 (363)
T ss_pred             ----hhhhccCCceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHHh
Confidence                122444677899999999999999999998 9999999999999999999987654

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.28  E-value=9.4e-06  Score=79.23  Aligned_cols=105  Identities=13%  Similarity=0.148  Sum_probs=85.1

Q ss_pred             eCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccccccc
Q 016866          162 AGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRI  241 (381)
Q Consensus       162 v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~~~~v  241 (381)
                      ..++.+..+|+..|..++...+.|+|+   ++   +++|+++..++.+.....            .++.           
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~g~~~~~~~~~~~~~~------------~~~~-----------  340 (400)
T PRK10070        290 KTPGFGPRSALKLLQDEDREYGYVIER---GN---KFVGAVSIDSLKTALTQQ------------QGLD-----------  340 (400)
T ss_pred             cCCCCCHHHHHHHHHhcCCceEEEEcC---CC---cEEEEEeHHHHHhhhhcC------------Cchh-----------
Confidence            446678999999999999999999976   67   899999999997754211            1111           


Q ss_pred             ccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 016866          242 GEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  297 (381)
Q Consensus       242 ~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~  297 (381)
                       +.+.....++.+++++.+++..+.+.... +||+|++|+++|+|+..++++.+..
T Consensus       341 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~  394 (400)
T PRK10070        341 -AALIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDR  394 (400)
T ss_pred             -hhhccCCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHHh
Confidence             12344577899999999999999987766 9999999999999999999997653

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=98.07  E-value=2.8e-05  Score=68.23  Aligned_cols=146  Identities=18%  Similarity=0.291  Sum_probs=109.9

Q ss_pred             CcccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeecccCCCCcEEEEeehHHHHHHHHHhccCCCCCChhHHhhccH
Q 016866           53 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI  132 (381)
Q Consensus        53 ~~~~d~~p~s~~vi~ld~~~~v~~A~~~l~~~~i~~~pV~d~~~~~~vGilt~~D~~~il~~~~~~~~~~~~~~l~~~~i  132 (381)
                      -.+-|+|-+.++++++..+.++.+.+..+.+...+.-||..+++..+.|++-++|++.+++   ++....        .+
T Consensus        67 l~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~---~~~~~F--------~i  135 (293)
T COG4535          67 LRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMR---SDAEPF--------DI  135 (293)
T ss_pred             hhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhc---CCcccc--------cH
Confidence            3445566556789999999999999999999999999999888888999999999987654   211111        11


Q ss_pred             HHHHHHHHhhhccccCCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHh
Q 016866          133 SAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCIC  212 (381)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~  212 (381)
                         ++                 +-+|.+.|+++-.+...++-+..++.|...|+|+   =|   -+-|++|..||+.-++
T Consensus       136 ---~~-----------------lLRPav~VPESKrvd~lLkeFR~~RnHMAIViDE---fG---gVsGLVTIEDiLEqIV  189 (293)
T COG4535         136 ---KE-----------------LLRPAVVVPESKRVDRLLKEFRSQRNHMAIVIDE---FG---GVSGLVTIEDILEQIV  189 (293)
T ss_pred             ---HH-----------------hcccceecccchhHHHHHHHHHhhcCceEEEEec---cC---CeeeeEEHHHHHHHHh
Confidence               11                 2468899999999999999999999999999987   56   5899999999999887


Q ss_pred             hhcccCCCCCccccCcccccccccc
Q 016866          213 RHFKHSSSSLPILQQPVSSIQLGTW  237 (381)
Q Consensus       213 ~~~~~~~~~~~~~~~~i~~l~ig~~  237 (381)
                      ...........  ...+..+.-++|
T Consensus       190 GdIEDE~Deee--~~dI~~ls~~~~  212 (293)
T COG4535         190 GDIEDEYDEEE--DADIRQLSRHTW  212 (293)
T ss_pred             cccccccchhh--hhhhHhhcCCce
Confidence            65543321111  222555554555

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.06  E-value=9.7e-06  Score=64.74  Aligned_cols=54  Identities=26%  Similarity=0.468  Sum_probs=49.2

Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866          240 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  293 (381)
Q Consensus       240 ~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  293 (381)
                      +++++|.+++.++.+++++.++++.|.+.+...+||+|++|+++|+++..|+.+
T Consensus        59 ~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~  112 (113)
T cd04597          59 RVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE  112 (113)
T ss_pred             hHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence            456678888999999999999999999999999999998999999999999864

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=97.96  E-value=2.3e-05  Score=77.59  Aligned_cols=143  Identities=15%  Similarity=0.218  Sum_probs=104.5

Q ss_pred             CCCCCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhc-c-cCCC--CCcc--
Q 016866          151 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHF-K-HSSS--SLPI--  224 (381)
Q Consensus       151 ~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~-~-~~~~--~~~~--  224 (381)
                      ++++|.++++++..-+.+....+.+.....+..||+|+...+. ...+.|++-.+.++..+.+.. . +.+.  ..+.  
T Consensus       584 a~ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~-~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~~~~~  662 (762)
T KOG0474|consen  584 AGEVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNE-AGRLHGLILRSHLLVLLKKRVFVEESRSTFDLPVRR  662 (762)
T ss_pred             HhhhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCcc-chhhhHHHHHHHHHHHHHhhhhhccCccccCcchhh
Confidence            3558999999999999999999999999999999998733221 126899999999988775432 1 1000  0000  


Q ss_pred             ---------ccCccccccccccc----cccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHH
Q 016866          225 ---------LQQPVSSIQLGTWV----PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI  291 (381)
Q Consensus       225 ---------~~~~i~~l~ig~~~----~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di  291 (381)
                               -..+++++.+....    .....+|.+.+.++.+++++..++.++.+-+.+++.||++.++++|++|++|+
T Consensus       663 ~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D~  742 (762)
T KOG0474|consen  663 KFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILTRKDL  742 (762)
T ss_pred             cCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEEEehhhh
Confidence                     01122232222111    12235678889999999999999999999999999999998999999999999


Q ss_pred             HHH
Q 016866          292 TAL  294 (381)
Q Consensus       292 ~~l  294 (381)
                      ...
T Consensus       743 ~~~  745 (762)
T KOG0474|consen  743 ARY  745 (762)
T ss_pred             hhH
Confidence            863

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=97.95  E-value=2.8e-05  Score=50.76  Aligned_cols=47  Identities=28%  Similarity=0.489  Sum_probs=42.9

Q ss_pred             ceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 016866          331 CQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  378 (381)
Q Consensus       331 ~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l  378 (381)
                      +.++.+++++.++++.|.+.+.+.+||+++ +++++|+++..|+++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~g~i~~~~l~~~~   48 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDE-EGRLVGIVTRRDIIKAL   48 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECC-CCeEEEEEEHHHHHHhh
Confidence            567899999999999999999999999994 58999999999998865

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.86  E-value=3.9e-05  Score=61.18  Aligned_cols=50  Identities=22%  Similarity=0.372  Sum_probs=45.6

Q ss_pred             cCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 016866          326 FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  376 (381)
Q Consensus       326 ~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~  376 (381)
                      +|..++.++.+++++.++++.|...+.+.+||+|+ +|+++|+||..||.+
T Consensus        63 im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~~~l~Givt~~dl~~  112 (113)
T cd04597          63 VINRKPVTARPNDPLREALNLMHEHNIRTLPVVDD-DGTPAGIITLLDLAE  112 (113)
T ss_pred             hcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECC-CCeEEEEEEHHHhhc
Confidence            66678889999999999999999999999999994 689999999999864

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=97.81  E-value=7.7e-05  Score=48.58  Aligned_cols=47  Identities=30%  Similarity=0.537  Sum_probs=42.5

Q ss_pred             ceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHH
Q 016866          249 FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  295 (381)
Q Consensus       249 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~  295 (381)
                      +.++.+++++.++++.|.+.+.+.+||++++++++|+++..++.+.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~   48 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL   48 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence            45788999999999999999999999999889999999999998753

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=97.63  E-value=0.00049  Score=68.55  Aligned_cols=127  Identities=17%  Similarity=0.235  Sum_probs=89.0

Q ss_pred             ceEecCC-CCHHHHHHHHHhCCCcEEEEEc--CCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCC--CC--C
Q 016866          249 FAMLRPT-ASLGSALALLVQADVSSIPIVD--DNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQ--DA--N  321 (381)
Q Consensus       249 ~~~v~~~-~~l~~a~~~m~~~~~~~lpVvd--~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~--~~--~  321 (381)
                      ..++..+ .++.+...+|.+..++.+||+=  +..+++|.+.++|+...+.+.........+.+. -+.+...  .+  .
T Consensus       558 L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~-~f~~~~~~~~~~~~  636 (696)
T KOG0475|consen  558 LIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSI-YFNDPSPSAVAGIP  636 (696)
T ss_pred             heeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceeccc-ccCCCCccccCCCC
Confidence            5566555 8999999999999999999874  367899999999987644321110000000111 0000000  00  1


Q ss_pred             CCcc---cCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 016866          322 PSLG---FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  378 (381)
Q Consensus       322 ~~~~---~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l  378 (381)
                      .+.+   +|+..++++...++...+++++.+-+++.+.|..  +|++.|+||..|++++.
T Consensus       637 ~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~--~G~l~Giitkkd~l~~~  694 (696)
T KOG0475|consen  637 SRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVTK--NGILLGIITKKDCLRHT  694 (696)
T ss_pred             CCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEcc--CCeeEeeeehHHHHHhh
Confidence            1222   7888899999999999999999999999887776  69999999999999864

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.32  E-value=0.0016  Score=60.29  Aligned_cols=169  Identities=18%  Similarity=0.200  Sum_probs=113.3

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccccccc
Q 016866          155 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  234 (381)
Q Consensus       155 ~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i  234 (381)
                      +.+.++.++-+  +.||+++     -+++.+..    +|   +++.+=|+.+|+.--...         +...-+.....
T Consensus       214 l~KTIvFitHD--LdEAlri-----G~rIaimk----dG---~ivQ~Gtp~eIl~~PAnd---------YV~~Fv~~v~~  270 (386)
T COG4175         214 LKKTIVFITHD--LDEALRI-----GDRIAIMK----DG---EIVQVGTPEEILLNPAND---------YVRDFVRNVDR  270 (386)
T ss_pred             hCCeEEEEecC--HHHHHhc-----cceEEEec----CC---eEEEeCCHHHHHcCccHH---------HHHHHHhcCCh
Confidence            34566666654  8888875     25677774    47   899999999998722111         11111111111


Q ss_pred             cccccccccccCC--CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHH
Q 016866          235 GTWVPRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQ  312 (381)
Q Consensus       235 g~~~~~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~  312 (381)
                      .. .-++.++|..  ....-.+...-..++..+.....+.+.+++..++.+|+++..++.....                
T Consensus       271 ~~-VltA~~IM~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~----------------  333 (386)
T COG4175         271 SR-VLTAKDIMRRPDLLIRKTPGDGPRVALKLLRDEGREYGYAVDRGNKFVGVVSIDSLVKAAL----------------  333 (386)
T ss_pred             hh-eeeHHHhhcccccccccccccccchhhhhhhhccchhhHHHhccCceeeEEeccchhcccc----------------
Confidence            00 1134455663  2222222333346778888888888888887888999999988776300                


Q ss_pred             HHhcCCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866          313 ALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  380 (381)
Q Consensus       313 ~l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~  380 (381)
                                     ..++.++..++++.+.+....+.... ++||| ++++++|+|+...++.+|.+
T Consensus       334 ---------------~~~~~~v~~d~~~~~~~~~~~~~~~p-~aVvd-e~~r~vG~i~~~~vl~aL~~  384 (386)
T COG4175         334 ---------------IDDVLTVDADTPLSEILARIRQAPCP-VAVVD-EDGRYVGIISRGELLEALAR  384 (386)
T ss_pred             ---------------cccccccCccchHHHHHHHHhcCCCc-eeEEc-CCCcEEEEecHHHHHHHHhc
Confidence                           12467889999999999999888874 78999 58999999999999999875

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=96.89  E-value=0.015  Score=58.24  Aligned_cols=133  Identities=13%  Similarity=0.125  Sum_probs=94.2

Q ss_pred             CceEeCCC-CCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCC---CCccccCcccccc
Q 016866          158 PLVQAGPY-DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSS---SLPILQQPVSSIQ  233 (381)
Q Consensus       158 ~~i~v~~~-~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~---~~~~~~~~i~~l~  233 (381)
                      +++.+..+ .++.|...+|.+...+..||+-+ .++.   .++|++..+++.-.+.........   .......+..+..
T Consensus       557 ~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~-~~sq---~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~~~~~~~  632 (696)
T KOG0475|consen  557 CLIVITQDSMTLEDLESLMEDTDFSGFPVVLS-EDSQ---RLVGFVLRRNLFLAILNARKIQSFIVTTSIYFNDPSPSAV  632 (696)
T ss_pred             hheeccccceeHHHHHHHHhhcccCCceEEEc-cccc---eeEEEEchHHHHHHHhhhccccccceecccccCCCCcccc
Confidence            46666665 79999999999999998998864 2234   799999999998877532211100   0012223322221


Q ss_pred             cccc-ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHH
Q 016866          234 LGTW-VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  295 (381)
Q Consensus       234 ig~~-~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~  295 (381)
                      -+.- .-...++|.-.+.++....+..-+++++.+-+++.+.|.. +|++.|+||.+|+++..
T Consensus       633 ~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~-~G~l~Giitkkd~l~~~  694 (696)
T KOG0475|consen  633 AGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVTK-NGILLGIITKKDCLRHT  694 (696)
T ss_pred             CCCCCCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEcc-CCeeEeeeehHHHHHhh
Confidence            1111 1234567777889999999999999999999999988764 89999999999998864

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=96.81  E-value=0.0053  Score=59.71  Aligned_cols=107  Identities=14%  Similarity=0.161  Sum_probs=72.5

Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCC
Q 016866          240 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  319 (381)
Q Consensus       240 ~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~  319 (381)
                      +++++|.+.......+-+  .+++.   ++.+.+.|+|+     |+++..+...+.....       +.++.+ +     
T Consensus       275 ~a~~~m~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-------~~~~~~-~-----  331 (382)
T TIGR03415       275 TARSLMRPLTDLEHVDGG--WCVSD---RRDTWLFTIDK-----QVRRRDAKLPVQAWAA-------EQEVES-L-----  331 (382)
T ss_pred             eHHHHhcccccccccCcc--hhhhh---cccceeEeecc-----ceecccchHhHhhccc-------ccchhh-h-----
Confidence            445667433333333322  44433   78899999985     8888777655443111       112222 1     


Q ss_pred             CCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866          320 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  380 (381)
Q Consensus       320 ~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~  380 (381)
                              .....++++++++.+++..+.+.+.. ++|+| + |+++|+|+..+++.++.+
T Consensus       332 --------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~-~-~~~~g~~~~~~~~~~~~~  381 (382)
T TIGR03415       332 --------EAAPTVINPDTLMRDVLAARHRTGGA-ILLVE-N-GRIVGVIGDDNIYHALLG  381 (382)
T ss_pred             --------cccCcccCCCCcHHHHHHHHhcCCCC-eEEee-C-CeEEEEEeHHHHHHHHhc
Confidence                    12467899999999999999888764 88898 4 999999999999999875

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=96.14  E-value=0.036  Score=56.76  Aligned_cols=59  Identities=10%  Similarity=0.091  Sum_probs=49.8

Q ss_pred             CCCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhc
Q 016866          153 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHF  215 (381)
Q Consensus       153 ~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~  215 (381)
                      .+|-+++..+..+++..|.-+.+....++.+|++++ .++-   -++|.+..+.+...+..+.
T Consensus       592 ~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s-~esm---iLlGSV~R~~L~~ll~~~i  650 (931)
T KOG0476|consen  592 HIMVTDVKYITKDTTYRELREALQTTTLRSFPLVES-KESM---ILLGSVARRYLTALLQRHI  650 (931)
T ss_pred             eeccccceeeeccCcHHHHHHHHHhCccceeccccC-cccc---eeeehhHHHHHHHHHHhhc
Confidence            589999999999999999988777766999999975 3333   6899999999999997654

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=95.39  E-value=0.14  Score=46.34  Aligned_cols=118  Identities=18%  Similarity=0.217  Sum_probs=69.5

Q ss_pred             CCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccc
Q 016866          156 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLG  235 (381)
Q Consensus       156 ~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig  235 (381)
                      .+-++.|.-+  +.||+++     ..++.|+++    |   +++.+-++.+|++.-...|-...  ...-....+.+...
T Consensus       186 ~kTivfVTHD--idEA~kL-----adri~vm~~----G---~i~Q~~~P~~il~~Pan~FV~~f--~g~~~~~~~~l~~~  249 (309)
T COG1125         186 GKTIVFVTHD--IDEALKL-----ADRIAVMDA----G---EIVQYDTPDEILANPANDFVEDF--FGESERGLRLLSLV  249 (309)
T ss_pred             CCEEEEEecC--HHHHHhh-----hceEEEecC----C---eEEEeCCHHHHHhCccHHHHHHH--hccccccccccchh
Confidence            3456666554  7888876     367888864    7   89999999888874333221100  00000011111110


Q ss_pred             ccccccccccCCCc----eEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866          236 TWVPRIGEANGRPF----AMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  293 (381)
Q Consensus       236 ~~~~~v~~~~~~~~----~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  293 (381)
                          .+.+.+....    -.+.......+++..+...+.+.+||+|++|+++|.++..+++.
T Consensus       250 ----~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~  307 (309)
T COG1125         250 ----SVADAVRRGEPADGEPLLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLD  307 (309)
T ss_pred             ----hHHHhhcccccccCCccccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhh
Confidence                1111121111    11223334456788888899999999999999999999999875

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=94.40  E-value=0.083  Score=49.29  Aligned_cols=91  Identities=15%  Similarity=0.188  Sum_probs=67.9

Q ss_pred             CCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccccccccccc
Q 016866          166 DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEAN  245 (381)
Q Consensus       166 ~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~~~~v~~~~  245 (381)
                      ..-..++..+.+.+.+.+.+++.   .+   +.+|+++..+....                                 .+
T Consensus       293 ~~~~~al~~~~~~~~~~~~~~~~---~~---~~~g~v~~~~~~~~---------------------------------~~  333 (386)
T COG4175         293 DGPRVALKLLRDEGREYGYAVDR---GN---KFVGVVSIDSLVKA---------------------------------AL  333 (386)
T ss_pred             cccchhhhhhhhccchhhHHHhc---cC---ceeeEEeccchhcc---------------------------------cc
Confidence            33455667776666666666643   44   68888888777652                                 12


Q ss_pred             CCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHh
Q 016866          246 GRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  296 (381)
Q Consensus       246 ~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~  296 (381)
                      ..++.++..++++.+.+..+.+... .+||+|++|+++|++++..++.++.
T Consensus       334 ~~~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde~~r~vG~i~~~~vl~aL~  383 (386)
T COG4175         334 IDDVLTVDADTPLSEILARIRQAPC-PVAVVDEDGRYVGIISRGELLEALA  383 (386)
T ss_pred             cccccccCccchHHHHHHHHhcCCC-ceeEEcCCCcEEEEecHHHHHHHHh
Confidence            3357788999999999988887654 6899999999999999999998765

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=93.88  E-value=0.56  Score=42.67  Aligned_cols=113  Identities=15%  Similarity=0.200  Sum_probs=69.9

Q ss_pred             CCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhc--------c-cccccccHHHHHhcC
Q 016866          247 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYA--------Q-IHLDEMNIHQALQLG  317 (381)
Q Consensus       247 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~--------~-~~~~~~~v~~~l~~~  317 (381)
                      +-++.+..+.  .||+++-     +++.|.+ +|+++-+-+..+++.--++..-.        . ..+...++.++....
T Consensus       187 kTivfVTHDi--dEA~kLa-----dri~vm~-~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~  258 (309)
T COG1125         187 KTIVFVTHDI--DEALKLA-----DRIAVMD-AGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRG  258 (309)
T ss_pred             CEEEEEecCH--HHHHhhh-----ceEEEec-CCeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhccc
Confidence            3456666654  7888664     5788888 79999999998887632211100        0 011122333322211


Q ss_pred             CCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866          318 QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  377 (381)
Q Consensus       318 ~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~  377 (381)
                      ..    .     .---........+++..+...+...+||+| ++|+++|.||..+++..
T Consensus       259 ~~----~-----~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd-~~g~~~G~vt~~~l~~~  308 (309)
T COG1125         259 EP----A-----DGEPLLEGFVDRDALSDFLARGRSVLPVVD-EDGRPLGTVTRADLLDE  308 (309)
T ss_pred             cc----c-----cCCccccchhhHHHHHHHHhcCCceeEEEC-CCCcEeeEEEHHHHhhh
Confidence            10    0     001122334445588888889999999999 47999999999999875

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=91.60  E-value=0.42  Score=46.61  Aligned_cols=48  Identities=13%  Similarity=0.211  Sum_probs=41.2

Q ss_pred             CCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHh
Q 016866          247 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  296 (381)
Q Consensus       247 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~  296 (381)
                      ....++++++++.+++..+.+.+.. +||+|+ |+++|+|++.+++..+.
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~g~~~~~~~~~~~~  380 (382)
T TIGR03415       333 AAPTVINPDTLMRDVLAARHRTGGA-ILLVEN-GRIVGVIGDDNIYHALL  380 (382)
T ss_pred             ccCcccCCCCcHHHHHHHHhcCCCC-eEEeeC-CeEEEEEeHHHHHHHHh
Confidence            3567899999999999999887754 888985 99999999999998654

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=86.43  E-value=1  Score=46.67  Aligned_cols=63  Identities=16%  Similarity=0.187  Sum_probs=54.3

Q ss_pred             cccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcC--CCcEEEEEeHHHHHHHHhh
Q 016866          235 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDD--NDSLLDIYSRSDITALAKD  297 (381)
Q Consensus       235 g~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~g~lvGiis~~Di~~l~~~  297 (381)
                      +.+...+.++|.+++..+..+.|..|..+.+....++.+|+||+  +--++|.|.++.+..++..
T Consensus       584 ~~h~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~  648 (931)
T KOG0476|consen  584 SVHTVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQR  648 (931)
T ss_pred             ceeEEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHh
Confidence            34455788999999999999999999999988877999999985  4579999999999887763

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	381
2v8q_E	330	Crystal Structure Of The Regulatory Fragment Of Mam		8e-34
2oox_G	333	Crystal Structure Of The Adenylate Sensor From Amp-		6e-24
2qr1_G	334	Crystal Structure Of The Adenylate Sensor From Amp-		6e-24
3t4n_C	323	Structure Of The Regulatory Fragment Of Saccharomyc		4e-23
2qlv_C	315	Crystal Structure Of The Heterotrimer Core Of The S		4e-23
2uv5_A	152	Crystal Structure Of A Cbs Domain Pair From The Reg		1e-13
2uv6_A	152	Crystal Structure Of A Cbs Domain Pair From The Reg		6e-13
2uv7_A	152	Crystal Structure Of A Cbs Domain Pair From The Reg		2e-12
2nyc_A	144	Crystal Structure Of The Bateman2 Domain Of Yeast S		2e-08
2nye_A	144	Crystal Structure Of The Bateman2 Domain Of Yeast S		6e-07
3fhm_A	165	Crystal Structure Of The Cbs-Domain Containing Prot		6e-04

>pdb|2V8Q|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian Ampk In Complexes With Amp Length = 330

Iteration: 1
 Score =  140 bits (354), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 106/334 (31%), Positives = 166/334 (49%), Gaps = 41/334 (12%)
Query: 47  SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSAL 106
           ++F+ +H  Y+L+P S K+   D +L VK+AF  L   G+   PLWD  K  FVG+L+  
Sbjct: 29  TTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT 88
Query: 107 DFILILRELGTNGSNLTE-EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPY 165
           DFI IL       S L +  ELE H I  W+   LQ + K            PLV   P 
Sbjct: 89  DFINILHRY--YKSALVQIYELEEHKIETWREVYLQDSFK------------PLVCISPN 134
Query: 166 DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPIL 225
            SL +    +++NK+  +P+I     +G+   IL    +   LK     F         +
Sbjct: 135 ASLFDAVSSLIRNKIHRLPVI--DPESGNTLYILTHKRILKFLKLFITEFPKPE----FM 188
Query: 226 QQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDI 285
            + +  +Q+GT+      AN    AM+R T  +  AL + VQ  VS++P+VD+   ++DI
Sbjct: 189 SKSLEELQIGTY------AN---IAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDI 239
Query: 286 YSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVME 345
           YS+ D+  LA +K Y  +   ++++ +ALQ     + S  F G     C   + L  ++ 
Sbjct: 240 YSKFDVINLAAEKTYNNL---DVSVTKALQ-----HRSHYFEG--VLKCYLHETLEAIIN 289
Query: 346 RLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 379
           RL    V RLV+V+     V+GI+SLSD+ + L+
Sbjct: 290 RLVEAEVHRLVVVDEHD-VVKGIVSLSDILQALV 322

>pdb|2OOX|G Chain G, Crystal Structure Of The Adenylate Sensor From Amp-activated Protein Kinase Complexed With Amp Length = 333

Iteration: 1
 Score =  108 bits (270), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 164/335 (48%), Gaps = 34/335 (10%)
Query: 45  RISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLS 104
            I +F+ + T Y++LP S ++   DV L VK +  +L    +   PLWD    +F G+L+
Sbjct: 13  EIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLT 72
Query: 105 ALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGP 164
             DF+ +++      S+  E   E        + K +L   R+++      P   +   P
Sbjct: 73  MADFVNVIKYY-YQSSSFPEAIAE--------IDKFRLLGLREVERKIGAIPPETIYVHP 123
Query: 165 YDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPI 224
             SL +  L + +++   +P+I   G  GS + I+ + +   ILK I  + K ++    +
Sbjct: 124 MHSLMDACLAMSKSRARRIPLIDVDGETGS-EMIVSVLTQYRILKFISMNCKETA----M 178
Query: 225 LQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLD 284
           L+ P++ + +GTW            A       +   + +L + ++S++PIV+   +LL+
Sbjct: 179 LRVPLNQMTIGTW---------SNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLN 229
Query: 285 IYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVM 344
           +Y   D+  L +D  Y+ +   ++++ +AL L + AN    F+G     C  +D L  + 
Sbjct: 230 VYESVDVMHLIQDGDYSNL---DLSVGEAL-LKRPAN----FDG--VHTCRATDRLDGIF 279
Query: 345 ERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 379
           + + +  V RL +V+   K +EGI+SL+D+  +++
Sbjct: 280 DAIKHSRVHRLFVVDENLK-LEGILSLADILNYII 313

>pdb|2QR1|G Chain G, Crystal Structure Of The Adenylate Sensor From Amp-Activated Protein Kinase In Complex With Adp Length = 334

Iteration: 1
 Score =  108 bits (269), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 164/335 (48%), Gaps = 34/335 (10%)
Query: 45  RISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLS 104
            I +F+ + T Y++LP S ++   DV L VK +  +L    +   PLWD    +F G+L+
Sbjct: 14  EIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLT 73
Query: 105 ALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGP 164
             DF+ +++      S+  E   E        + K +L   R+++      P   +   P
Sbjct: 74  MADFVNVIKYY-YQSSSFPEAIAE--------IDKFRLLGLREVERKIGAIPPETIYVHP 124
Query: 165 YDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPI 224
             SL +  L + +++   +P+I   G  GS + I+ + +   ILK I  + K ++    +
Sbjct: 125 MHSLMDACLAMSKSRARRIPLIDVDGETGS-EMIVSVLTQYRILKFISMNCKETA----M 179
Query: 225 LQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLD 284
           L+ P++ + +GTW            A       +   + +L + ++S++PIV+   +LL+
Sbjct: 180 LRVPLNQMTIGTW---------SNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLN 230
Query: 285 IYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVM 344
           +Y   D+  L +D  Y+ +   ++++ +AL L + AN    F+G     C  +D L  + 
Sbjct: 231 VYESVDVMHLIQDGDYSNL---DLSVGEAL-LKRPAN----FDG--VHTCRATDRLDGIF 280
Query: 345 ERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 379
           + + +  V RL +V+   K +EGI+SL+D+  +++
Sbjct: 281 DAIKHSRVHRLFVVDENLK-LEGILSLADILNYII 314

>pdb|3T4N|C Chain C, Structure Of The Regulatory Fragment Of Saccharomyces Cerevisiae Ampk In Complex With Adp Length = 323

Iteration: 1
 Score =  105 bits (262), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 95/354 (26%), Positives = 167/354 (47%), Gaps = 65/354 (18%)
Query: 40  QLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRF 99
           QL+ + I  FL++ T Y++LP S ++  LD +L VK++ +VL +  +   PLWD    RF
Sbjct: 17  QLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRF 76
Query: 100 VGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL----NLKR-----QMDG 150
            G+L+  DFI +++   +N       EL         V KLQL    +++R     Q+D 
Sbjct: 77  AGLLTTTDFINVIQYYFSNPDKF---EL---------VDKLQLDGLKDIERALGVDQLDT 124
Query: 151 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 210
                 RPL +A          LK+L+++   +P+I         + ++ + +   ILK 
Sbjct: 125 ASIHPSRPLFEA---------CLKMLESRSGRIPLIDQDEETHR-EIVVSVLTQYRILKF 174
Query: 211 I---CR--HFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALL 265
           +   CR  HF         L+ P+  + +      I + N +   M  P   +   + +L
Sbjct: 175 VALNCRETHF---------LKIPIGDLNI------ITQDNMKSCQMTTPVIDV---IQML 216
Query: 266 VQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLG 325
            Q  VSS+PI+D+N  L+++Y   D+  L K   Y  + L   ++ +AL    D      
Sbjct: 217 TQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSL---SVGEALMRRSD-----D 268
Query: 326 FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 379
           F G     C ++D L  +M+ +    V R  +V+    R+ G+++LSD+ +++L
Sbjct: 269 FEG--VYTCTKNDKLSTIMDNIRKARVHRFFVVD-DVGRLVGVLTLSDILKYIL 319

>pdb|2QLV|C Chain C, Crystal Structure Of The Heterotrimer Core Of The S. Cerevisiae Ampk Homolog Snf1 Length = 315

Iteration: 1
 Score =  105 bits (262), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 95/354 (26%), Positives = 167/354 (47%), Gaps = 65/354 (18%)
Query: 40  QLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRF 99
           QL+ + I  FL++ T Y++LP S ++  LD +L VK++ +VL +  +   PLWD    RF
Sbjct: 10  QLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRF 69
Query: 100 VGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL----NLKR-----QMDG 150
            G+L+  DFI +++   +N       EL         V KLQL    +++R     Q+D 
Sbjct: 70  AGLLTTTDFINVIQYYFSNPDKF---EL---------VDKLQLDGLKDIERALGVDQLDT 117
Query: 151 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 210
                 RPL +A          LK+L+++   +P+I         + ++ + +   ILK 
Sbjct: 118 ASIHPSRPLFEA---------CLKMLESRSGRIPLIDQDEETHR-EIVVSVLTQYRILKF 167
Query: 211 I---CR--HFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALL 265
           +   CR  HF         L+ P+  + +      I + N +   M  P   +   + +L
Sbjct: 168 VALNCRETHF---------LKIPIGDLNI------ITQDNMKSCQMTTPVIDV---IQML 209
Query: 266 VQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLG 325
            Q  VSS+PI+D+N  L+++Y   D+  L K   Y  + L   ++ +AL    D      
Sbjct: 210 TQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSL---SVGEALMRRSD-----D 261
Query: 326 FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 379
           F G     C ++D L  +M+ +    V R  +V+    R+ G+++LSD+ +++L
Sbjct: 262 FEG--VYTCTKNDKLSTIMDNIRKARVHRFFVVD-DVGRLVGVLTLSDILKYIL 312

>pdb|2NYC|A Chain A, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4 Length = 144

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 14/139 (10%)
Query: 241 IGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAY 300
           I + N +   M  P   +   + +L Q  VSS+PI+D+N  L+++Y   D+  L K   Y
Sbjct: 16  ITQDNMKSCQMTTPVIDV---IQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIY 72
Query: 301 AQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEA 360
             + L   ++ +AL    D      F G     C ++D L  +M+ +    V R  +V+ 
Sbjct: 73  NDLSL---SVGEALMRRSDD-----FEG--VYTCTKNDKLSTIMDNIRKARVHRFFVVDD 122
Query: 361 GSKRVEGIISLSDVFRFLL 379
              R+ G+++LSD+ +++L
Sbjct: 123 -VGRLVGVLTLSDILKYIL 140

>pdb|2NYE|A Chain A, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4 Length = 144

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 62/125 (49%), Gaps = 11/125 (8%)
Query: 255 TASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQAL 314
           T  +   +  L Q  VSS+PI+D+N  L+++Y   D+  L K   Y  + L   ++ +AL
Sbjct: 27  TTPVIDVIQXLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSL---SVGEAL 83
Query: 315 QLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDV 374
               D      F G     C ++D L  + + +    V R  +V+    R+ G+++LSD+
Sbjct: 84  XRRSDD-----FEG--VYTCTKNDKLSTIXDNIRKARVHRFFVVDD-VGRLVGVLTLSDI 135
Query: 375 FRFLL 379
            +++L
Sbjct: 136 LKYIL 140

>pdb|3FHM|A Chain A, Crystal Structure Of The Cbs-Domain Containing Protein Atu1752 From Agrobacterium Tumefaciens Length = 165

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 18/147 (12%)
Query: 234 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 293
           + T+V  + +  GR    + P  S+G A   L    + ++ + D +  +L I++  D+  
Sbjct: 22  MATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLV- 80
Query: 294 LAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVR 353
               KA A           A  L Q  + ++  N  RCQ    +D L ++M      G  
Sbjct: 81  ----KAVAG--------QGAASLQQSVSVAMTKNVVRCQHNSTTDQLMEIM----TGGRF 124
Query: 354 RLVIVEAGSKRVEGIISLSDVFRFLLG 380
           R V VE  + R+ GIIS+ DV +  +G
Sbjct: 125 RHVPVEE-NGRLAGIISIGDVVKARIG 150

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	381
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	5e-73
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	4e-66
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	2e-65
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	1e-35
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	1e-05
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	3e-31
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	3e-05
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	2e-04
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	7e-28
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	5e-07
3ddj_A	296	CBS domain-containing protein; structural genomics	1e-20
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	6e-12
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	2e-10
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	3e-10
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	7e-10
1pvm_A	184	Conserved hypothetical protein TA0289; structural	7e-10
1pvm_A	184	Conserved hypothetical protein TA0289; structural	3e-04
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	8e-10
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	3e-05
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	8e-10
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	1e-09
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	2e-09
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	8e-04
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	1e-08
4fry_A	157	Putative signal-transduction protein with CBS DOM;	1e-08
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	3e-08
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	3e-05
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	1e-07
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	9e-05
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	1e-07
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	1e-07
1pbj_A	125	Hypothetical protein; structural genomics, domain,	2e-07
1pbj_A	125	Hypothetical protein; structural genomics, domain,	3e-05
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	3e-07
1vr9_A	213	CBS domain protein/ACT domain protein; structural	1e-06
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	2e-06
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	5e-06
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	3e-04
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	7e-06
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	1e-05
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	4e-05
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	2e-05
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	2e-04
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	4e-05
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	6e-05
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	8e-05
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	1e-04
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	3e-04
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	9e-04

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score =  229 bits (586), Expect = 5e-73
 Identities = 73/345 (21%), Positives = 155/345 (44%), Gaps = 36/345 (10%)

Query: 36  EADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF 95
           +   + +   I +F+ + T Y++LP S ++   DV L VK +  +L    +   PLWD  
Sbjct: 5   QETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSE 64

Query: 96  KGRFVGVLSALDFILILRELGTNGSNLTE-EELETHTISAWKVGKLQLNLKRQMDGNGRP 154
             +F G+L+  DF+ +++    + S      E++   +   +  + ++            
Sbjct: 65  ANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAI--------- 115

Query: 155 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRH 214
            P   +   P  SL +  L + +++   +P+I   G  GS + I+ + +   ILK I  +
Sbjct: 116 -PPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGS-EMIVSVLTQYRILKFISMN 173

Query: 215 FKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIP 274
            K       +L+ P++ + +GTW                    +   + +L + ++S++P
Sbjct: 174 CKE----TAMLRVPLNQMTIGTWSNLA---------TASMETKVYDVIKMLAEKNISAVP 220

Query: 275 IVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMC 334
           IV+   +LL++Y   D+  L +D  Y+ + L   ++ +AL                   C
Sbjct: 221 IVNSEGTLLNVYESVDVMHLIQDGDYSNLDL---SVGEALLKRPANFD-------GVHTC 270

Query: 335 LRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 379
             +D L  + + + +  V RL +V+  + ++EGI+SL+D+  +++
Sbjct: 271 RATDRLDGIFDAIKHSRVHRLFVVDE-NLKLEGILSLADILNYII 314

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score =  212 bits (540), Expect = 4e-66
 Identities = 98/347 (28%), Positives = 164/347 (47%), Gaps = 39/347 (11%)

Query: 33  QYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLW 92
           ++S+   + +    ++F+ +H  Y+L+P S K+   D +L VK+AF  L   G+   PLW
Sbjct: 15  EHSQETPESNSSVYTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLW 74

Query: 93  DDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNG 152
           D  K  FVG+L+  DFI IL     + + +   ELE H I  W+   LQ           
Sbjct: 75  DSKKQSFVGMLTITDFINILHRYYKS-ALVQIYELEEHKIETWREVYLQD---------- 123

Query: 153 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCIC 212
               +PLV   P  SL +    +++NK+  +P+I            LY+ +   ILK + 
Sbjct: 124 --SFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDP-----ESGNTLYILTHKRILKFLK 176

Query: 213 RHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSS 272
                       + + +  +Q+GT+            AM+R T  +  AL + VQ  VS+
Sbjct: 177 LFITEFPKP-EFMSKSLEELQIGTY---------ANIAMVRTTTPVYVALGIFVQHRVSA 226

Query: 273 IPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQ 332
           +P+VD+   ++DIYS+ D+  LA +K Y  +    +++ +ALQ        +        
Sbjct: 227 LPVVDEKGRVVDIYSKFDVINLAAEKTYNNLD---VSVTKALQHRSHYFEGV-------L 276

Query: 333 MCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 379
            C   + L  ++ RL    V RLV+V+     V+GI+SLSD+ + L+
Sbjct: 277 KCYLHETLEAIINRLVEAEVHRLVVVDE-HDVVKGIVSLSDILQALV 322

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score =  209 bits (534), Expect = 2e-65
 Identities = 79/356 (22%), Positives = 158/356 (44%), Gaps = 37/356 (10%)

Query: 24  LDRTFEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYE 83
           + +  +   +    + QL+ + I  FL++ T Y++LP S ++  LD +L VK++ +VL +
Sbjct: 1   MAKPTQDSQEKVSIEQQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQ 60

Query: 84  QGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 143
             +   PLWD    RF G+L+  DFI +++   +N      E ++   +   K  +  L 
Sbjct: 61  NSIVSAPLWDSKTSRFAGLLTTTDFINVIQYYFSNPDKF--ELVDKLQLDGLKDIERALG 118

Query: 144 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLAS 203
           +                   P   L E  LK+L+++   +P+I         + ++ + +
Sbjct: 119 VD----------QLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHR-EIVVSVLT 167

Query: 204 LSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALA 263
              ILK +  + + +      L+ P+  + + T                + T  +   + 
Sbjct: 168 QYRILKFVALNCRET----HFLKIPIGDLNIITQ---------DNMKSCQMTTPVIDVIQ 214

Query: 264 LLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPS 323
           +L Q  VSS+PI+D+N  L+++Y   D+  L K   Y  + L   ++ +AL    D    
Sbjct: 215 MLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSL---SVGEALMRRSDDFE- 270

Query: 324 LGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 379
                     C ++D L  +M+ +    V R  +V+    R+ G+++LSD+ +++L
Sbjct: 271 ------GVYTCTKNDKLSTIMDNIRKARVHRFFVVDD-VGRLVGVLTLSDILKYIL 319

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score =  114 bits (289), Expect = 3e-31
 Identities = 36/157 (22%), Positives = 71/157 (45%), Gaps = 20/157 (12%)

Query: 223 PILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSL 282
             L+ P+  + + T                + T  +   + +L Q  VSS+PI+D+N  L
Sbjct: 4   HFLKIPIGDLNIITQ---------DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYL 54

Query: 283 LDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHK 342
           +++Y   D+  L K   Y  + L    + +AL    D       + +    C ++D L  
Sbjct: 55  INVYEAYDVLGLIKGGIYNDLSLS---VGEALMRRSD-------DFEGVYTCTKNDKLST 104

Query: 343 VMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 379
           +M+ +    V R  +V+    R+ G+++LSD+ +++L
Sbjct: 105 IMDNIRKARVHRFFVVDD-VGRLVGVLTLSDILKYIL 140

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 42.5 bits (101), Expect = 3e-05
 Identities = 26/142 (18%), Positives = 45/142 (31%), Gaps = 32/142 (22%)

Query: 157 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTG-PAGSCQEILYLASLSDILKCICRHF 215
             +        + +V   + Q +V++VPII   G        +       D+L  I    
Sbjct: 19  DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLIN----VY---EAYDVLGLIKGGI 71

Query: 216 KHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAML------RPTASLGSALALLVQAD 269
            +  S                    +GEA  R                L + +  + +A 
Sbjct: 72  YNDLSL------------------SVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKAR 113

Query: 270 VSSIPIVDDNDSLLDIYSRSDI 291
           V    +VDD   L+ + + SDI
Sbjct: 114 VHRFFVVDDVGRLVGVLTLSDI 135

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 40.2 bits (95), Expect = 2e-04
 Identities = 24/142 (16%), Positives = 44/142 (30%), Gaps = 36/142 (25%)

Query: 74  VKQAFHVLYEQ---GLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETH 130
           V     +L +     +P++    D  G  + V  A D + +++    N  +L+  E    
Sbjct: 30  VIDVIQMLTQGRVSSVPII----DENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMR 85

Query: 131 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTG 190
                                       +      D L  +   I + +V    ++   G
Sbjct: 86  R---------------------SDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVG 124

Query: 191 -PAGSCQEILYLASLSDILKCI 211
              G       + +LSDILK I
Sbjct: 125 RLVG-------VLTLSDILKYI 139

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score =  109 bits (275), Expect = 7e-28
 Identities = 40/317 (12%), Positives = 101/317 (31%), Gaps = 48/317 (15%)

Query: 62  SGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSN 121
           + K+  +     +++A   + E     +P+ +    + VG+++++D +  +         
Sbjct: 11  NKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSKYNLI 70

Query: 122 LTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVA 181
             + E          V ++       M          ++       + E     L   V 
Sbjct: 71  REKHERNFLAAINEPVREI-------M-------EENVITLKENADIDEAIETFLTKNVG 116

Query: 182 TVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRI 241
             PI++         +++ L +  D+++ +      +      + + V            
Sbjct: 117 GAPIVNDEN------QLISLITERDVIRALLDKIDENEVIDDYITRDVIVA--------- 161

Query: 242 GEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYA 301
                       P   L      +V+     +P+V +   L+ I + +D   L       
Sbjct: 162 -----------TPGERLKDVARTMVRNGFRRLPVVSEGR-LVGIITSTDFIKLLGSDWAF 209

Query: 302 QIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAG 361
             H+   N+ +   +            +        D L K+ E +    +  L +V+  
Sbjct: 210 N-HMQTGNVREITNV-----RMEEIMKRDVITAKEGDKLKKIAEIMVTNDIGALPVVDEN 263

Query: 362 SKRVEGIISLSDVFRFL 378
            + ++GII+  DV ++ 
Sbjct: 264 LR-IKGIITEKDVLKYF 279

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 49.8 bits (119), Expect = 5e-07
 Identities = 25/143 (17%), Positives = 51/143 (35%), Gaps = 5/143 (3%)

Query: 238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVD-DNDSLLDIYSRSDITALAK 296
           V  +  A  +    + PT ++  AL  + +     +P+V+  N+ ++ I +  DI     
Sbjct: 3   VRVMKIAQNKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDI---VD 59

Query: 297 DKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLV 356
                  +      H+   L     P      +       +  + + +E      V    
Sbjct: 60  FMGGGSKYNLIREKHERNFLAAINEPVREIMEENVITLKENADIDEAIETFLTKNVGGAP 119

Query: 357 IVEAGSKRVEGIISLSDVFRFLL 379
           IV   ++ +  +I+  DV R LL
Sbjct: 120 IVNDENQ-LISLITERDVIRALL 141

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 89.8 bits (223), Expect = 1e-20
 Identities = 33/321 (10%), Positives = 94/321 (29%), Gaps = 62/321 (19%)

Query: 62  SGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSN 121
                 L     +  AF  + E G+  + + ++   +  G+L+  D +  +        +
Sbjct: 27  IKNPPILSKEDRLGSAFKKINEGGIGRIIVANE---KIEGLLTTRDLLSTVESYCK--DS 81

Query: 122 LTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVA 181
            ++ +L  + IS   +          M           V              ++     
Sbjct: 82  CSQGDL--YHISTTPIIDY-------M-------TPNPVTVYNTSDEFTAINIMVTRNFG 125

Query: 182 TVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRI 241
           ++P++          + + + +  + L       +                        +
Sbjct: 126 SLPVVDIND------KPVGIVTEREFLLLYKDLDEIF---------------------PV 158

Query: 242 GEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDKAY 300
                     +     L  A+ L+++     +P++DD++ ++ I +  +    LAK    
Sbjct: 159 KVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDK 218

Query: 301 AQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEA 360
                    + + +        +L               +++    +    +  L+I+  
Sbjct: 219 LDPDYFYGKVVKDV-----MVTNL-------VTIDELASVNRAAAEMIVKRIGSLLILNK 266

Query: 361 GSKRVEGIISLSDVFRFLLGV 381
            +  + GII+  D+   L  +
Sbjct: 267 DNT-IRGIITERDLLIALHHI 286

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score = 61.8 bits (151), Expect = 6e-12
 Identities = 23/134 (17%), Positives = 50/134 (37%), Gaps = 22/134 (16%)

Query: 247 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT--ALAKDKAYAQIH 304
                +    +L +A   + + D+ ++PI  D+D L  + +  DI    LA         
Sbjct: 16  AGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTAT 75

Query: 305 LDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKR 364
             E+       +  +A                   + +++  +    VRR+ ++     R
Sbjct: 76  AGELARDSIYYVDANA------------------SIQEMLNVMEEHQVRRVPVISEH--R 115

Query: 365 VEGIISLSDVFRFL 378
           + GI++ +D+ R L
Sbjct: 116 LVGIVTEADIARHL 129

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score = 57.2 bits (139), Expect = 2e-10
 Identities = 26/136 (19%), Positives = 62/136 (45%), Gaps = 25/136 (18%)

Query: 247 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI-TALAKDKAYAQIHL 305
           +    ++P+ S+  A  L+++ DV S+ +++D+ +++  +++SDI   +        I +
Sbjct: 15  KKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYDIPV 74

Query: 306 DE-MNIHQALQLGQDANPSLGFNGQRCQMCLRSD-PLHKVMERLANPGVRRLVIVEAGSK 363
           +  M            N           +    + PL +V+ ++A   ++ ++I E G  
Sbjct: 75  ERIMT----------RNL----------ITANVNTPLGEVLRKMAEHRIKHILIEEEG-- 112

Query: 364 RVEGIISLSDVFRFLL 379
           ++ GI +LSD+     
Sbjct: 113 KIVGIFTLSDLLEASR 128

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164

 Score = 57.7 bits (139), Expect = 3e-10
 Identities = 22/138 (15%), Positives = 50/138 (36%), Gaps = 13/138 (9%)

Query: 247 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDS--LLDIYSRSDITALAKDKAYAQIH 304
                L     L   + ++   DV+  P+V+  +S  L+ I  R+ +    + +  ++  
Sbjct: 21  HSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPSRAP 80

Query: 305 LDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSD-PLHKVMERLANPGVRRLVIVEAGSK 363
             +  +   L  G    P          + L S+  LH+         ++ L +   G  
Sbjct: 81  GHQQCLQDILARGCPTEPV--------TLTLFSETTLHQAQNLFKLLNLQSLFVTSRG-- 130

Query: 364 RVEGIISLSDVFRFLLGV 381
           R  G +S  ++ + +  +
Sbjct: 131 RAVGCVSWVEMKKAISNL 148

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165

 Score = 56.5 bits (137), Expect = 7e-10
 Identities = 30/149 (20%), Positives = 57/149 (38%), Gaps = 24/149 (16%)

Query: 234 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT- 292
           + T+V  + +  GR    + P  S+G A   L    + ++ + D +  +L I++  D+  
Sbjct: 22  MATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVK 81

Query: 293 -ALAKDKAYAQIHLDE-MNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANP 350
               +  A  Q  +   M            N            C  +    ++ME +   
Sbjct: 82  AVAGQGAASLQQSVSVAM----------TKNV---------VRCQHNSTTDQLMEIMTGG 122

Query: 351 GVRRLVIVEAGSKRVEGIISLSDVFRFLL 379
             R + + E G  R+ GIIS+ DV +  +
Sbjct: 123 RFRHVPVEENG--RLAGIISIGDVVKARI 149

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 57.0 bits (138), Expect = 7e-10
 Identities = 21/130 (16%), Positives = 51/130 (39%), Gaps = 23/130 (17%)

Query: 252 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT--ALAKDKAYAQIHLDE-M 308
           +    ++  A+ ++ +  +  + + DDN + + + S   I    + ++K   ++ +   M
Sbjct: 22  VNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVM 81

Query: 309 NIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGI 368
                               +          +  V   L+  G+ R  +V+    RV GI
Sbjct: 82  R-------------------KPIPKVKSDYDVKDVAAYLSENGLERCAVVD-DPGRVVGI 121

Query: 369 ISLSDVFRFL 378
           ++L+D+ R+L
Sbjct: 122 VTLTDLSRYL 131

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 18/150 (12%), Positives = 46/150 (30%), Gaps = 27/150 (18%)

Query: 157 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTG-PAGSCQEILYLASLSDILKCICRHF 215
                     ++ +    + +N +  + +    G   G    +L   S   I+K      
Sbjct: 17  SNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVG----LL---SERSIIKRFIPRN 69

Query: 216 KHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPI 275
           K           P+  +              +P   ++    +    A L +  +    +
Sbjct: 70  KKPDE------VPIRLVM--R----------KPIPKVKSDYDVKDVAAYLSENGLERCAV 111

Query: 276 VDDNDSLLDIYSRSDIT-ALAKDKAYAQIH 304
           VDD   ++ I + +D++  L++      + 
Sbjct: 112 VDDPGRVVGIVTLTDLSRYLSRASITDILL 141

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 55.5 bits (134), Expect = 8e-10
 Identities = 18/132 (13%), Positives = 37/132 (28%), Gaps = 20/132 (15%)

Query: 247 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLD 306
             + +     S   A   L  +  +  P++D     L +   S +    K     +  L 
Sbjct: 13  TDYPVFTLGGSTADAARRLAASGCACAPVLDGE-RYLGMVHLSRLLEGRKGWPTVKEKLG 71

Query: 307 EMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVE 366
           E  +                           + L   +  +A      + + +    R E
Sbjct: 72  EELLETVRSYRPG------------------EQLFDNLISVAAAKCSVVPLADE-DGRYE 112

Query: 367 GIISLSDVFRFL 378
           G++S   +  FL
Sbjct: 113 GVVSRKRILGFL 124

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 23/132 (17%), Positives = 43/132 (32%), Gaps = 28/132 (21%)

Query: 166 DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPIL 225
            S  + A ++  +  A  P++      G       +  LS +L+             P +
Sbjct: 22  GSTADAARRLAASGCACAPVLDGERYLG-------MVHLSRLLE--------GRKGWPTV 66

Query: 226 QQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDI 285
           ++ +    L                  RP   L   L  +  A  S +P+ D++     +
Sbjct: 67  KEKLGEELL------------ETVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGV 114

Query: 286 YSRSDI-TALAK 296
            SR  I   LA+
Sbjct: 115 VSRKRILGFLAE 126

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score = 56.7 bits (137), Expect = 8e-10
 Identities = 32/140 (22%), Positives = 56/140 (40%), Gaps = 15/140 (10%)

Query: 252 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIH 311
           ++P+ S+  AL LLV+  V+ +P++DDN +L+ + S  D+  LA D    +   D     
Sbjct: 19  VKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDL--LALDSISGRSQNDTNLFP 76

Query: 312 QALQLGQDANPSLGFNGQRCQMCLR------------SDPLHKVMERLANPGVRRLVIVE 359
                 +  N       +     +             S  L      L     RRL +V+
Sbjct: 77  DVDSTWKTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVD 136

Query: 360 AGSKRVEGIISLSDVFRFLL 379
               ++ GI++  +V R  L
Sbjct: 137 -ADGKLIGILTRGNVVRAAL 155

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score = 55.8 bits (135), Expect = 1e-09
 Identities = 22/132 (16%), Positives = 52/132 (39%), Gaps = 21/132 (15%)

Query: 252 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDKAYAQIHLDE-MN 309
           +    S+  A+  +   DV ++ +VD +  L+ + SR D+  A    +    + +   M 
Sbjct: 29  IHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIGQQELTSVPVHIIMT 88

Query: 310 IHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSK--RVEG 367
                       P++         C R D +  + + L    +  L +++   K   V G
Sbjct: 89  ----------RMPNITV-------CRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIG 131

Query: 368 IISLSDVFRFLL 379
            ++ +++ + L+
Sbjct: 132 RVTKTNMTKILV 143

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 28/145 (19%), Positives = 53/145 (36%), Gaps = 24/145 (16%)

Query: 240 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV--DDNDSLLDIYSRSDIT-ALAK 296
           R  E   RP   L  TA++      L +  V    +   D+    + + S  DI  A+A+
Sbjct: 6   RTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQ 65

Query: 297 DKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLV 356
                   +   N           +P            L +DP+H   E++    +R +V
Sbjct: 66  RLDLDGPAMPIAN-----------SP---------ITVLDTDPVHVAAEKMRRHNIRHVV 105

Query: 357 IVEAGSKRVEGIISLSDVFRFLLGV 381
           +V   +  + G++S+ D+      +
Sbjct: 106 VVN-KNGELVGVLSIRDLCFERAIL 129

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score = 38.4 bits (90), Expect = 8e-04
 Identities = 23/145 (15%), Positives = 48/145 (33%), Gaps = 41/145 (28%)

Query: 155 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTG---PAGSCQEILYLASLSDILKCI 211
             RP V      +++EVA ++ +N+V    +        P      ++   S  DIL+ +
Sbjct: 11  LKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVA----VV---SERDILRAV 63

Query: 212 CRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAM-----LRPTASLGSALALLV 266
            +           L  P   I                        +  T  +  A   + 
Sbjct: 64  AQRLD--------LDGPAMPI------------------ANSPITVLDTDPVHVAAEKMR 97

Query: 267 QADVSSIPIVDDNDSLLDIYSRSDI 291
           + ++  + +V+ N  L+ + S  D+
Sbjct: 98  RHNIRHVVVVNKNGELVGVLSIRDL 122

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 Length = 135

 Score = 52.2 bits (126), Expect = 1e-08
 Identities = 22/145 (15%), Positives = 54/145 (37%), Gaps = 25/145 (17%)

Query: 238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT--ALA 295
           V  + +  G     + P  S+ +A+  +   ++ ++ ++ D + L+ I +  D +  +  
Sbjct: 8   VKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKD-EKLVGILTERDFSRKSYL 66

Query: 296 KDKAYAQIHLDE-MNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRR 354
            DK      + E M                            ++     M  +    VR 
Sbjct: 67  LDKPVKDTQVKEIM----------TRQV---------AYVDLNNTNEDCMALITEMRVRH 107

Query: 355 LVIVEAGSKRVEGIISLSDVFRFLL 379
           L +++ G  +V G++S+ D+ +  +
Sbjct: 108 LPVLDDG--KVIGLLSIGDLVKDAI 130

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} Length = 157

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 21/143 (14%), Positives = 57/143 (39%), Gaps = 25/143 (17%)

Query: 240 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT--ALAKD 297
           +    +GR    +     +  A+ L+ +  + ++ +VD +D +  I +  D     + ++
Sbjct: 14  KAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGDD-IAGIVTERDYARKVVLQE 72

Query: 298 KAYAQIHLDE-MNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLV 356
           ++     ++E M           A           +    S    + M  +    +R L 
Sbjct: 73  RSSKATRVEEIM----------TAKV---------RYVEPSQSTDECMALMTEHRMRHLP 113

Query: 357 IVEAGSKRVEGIISLSDVFRFLL 379
           +++ G  ++ G+IS+ D+ + ++
Sbjct: 114 VLDGG--KLIGLISIGDLVKSVI 134

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 51.9 bits (125), Expect = 3e-08
 Identities = 11/140 (7%), Positives = 45/140 (32%), Gaps = 26/140 (18%)

Query: 252 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIH 311
           +     +   +  +++  V+    V  ++ L+ +     +  ++    +  I  +E+   
Sbjct: 29  VEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFIPKEELIRS 88

Query: 312 QALQLGQD-----------ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEA 360
              +L               +                 PL + ++ + +  ++ + +V+ 
Sbjct: 89  SMKRLIAKNASEIMLDPVYVHM--------------DTPLEEALKLMIDNNIQEMPVVD- 133

Query: 361 GSKRVEGIISLSDVFRFLLG 380
               + G ++  ++   L  
Sbjct: 134 EKGEIVGDLNSLEILLALWK 153

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 22/144 (15%), Positives = 51/144 (35%), Gaps = 14/144 (9%)

Query: 157 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTG-PAGSCQEILYLASLSDILKCICRHF 215
                      ++E+  +IL++ V     +       G    ++    +  +LK    HF
Sbjct: 24  LKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVG----MI---PVMHLLKVSGFHF 76

Query: 216 KHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPI 275
                   +++  +  +          E    P   +     L  AL L++  ++  +P+
Sbjct: 77  FGFIPKEELIRSSMKRLIAKN----ASEIMLDP-VYVHMDTPLEEALKLMIDNNIQEMPV 131

Query: 276 VDDNDSLLDIYSRSDIT-ALAKDK 298
           VD+   ++   +  +I  AL K +
Sbjct: 132 VDEKGEIVGDLNSLEILLALWKGR 155

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 49.5 bits (119), Expect = 1e-07
 Identities = 26/141 (18%), Positives = 55/141 (39%), Gaps = 24/141 (17%)

Query: 240 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDK 298
            + E        +   A L     ++ + ++ S+ +VD  +  + I +  DI  A+ K K
Sbjct: 5   IVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDG-NKPVGIITERDIVKAIGKGK 63

Query: 299 AYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSD-PLHKVMERLANPGVRRLVI 357
           +      + M           A+           + +R D P+   +  +    +R L +
Sbjct: 64  SLETKAEEFMT----------ASL----------ITIREDSPITGALALMRQFNIRHLPV 103

Query: 358 VEAGSKRVEGIISLSDVFRFL 378
           V+     ++GIIS+ D+ R +
Sbjct: 104 VD-DKGNLKGIISIRDITRAI 123

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 41.0 bits (97), Expect = 9e-05
 Identities = 28/142 (19%), Positives = 52/142 (36%), Gaps = 39/142 (27%)

Query: 157 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 216
             ++       L ++A  + +  + +V ++    P G    I+   +  DI+K I +   
Sbjct: 12  TQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVG----II---TERDIVKAIGKGKS 64

Query: 217 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAM------LRPTASLGSALALLVQADV 270
                   L+                        M      +R  + +  ALAL+ Q ++
Sbjct: 65  --------LETKAEEF------------------MTASLITIREDSPITGALALMRQFNI 98

Query: 271 SSIPIVDDNDSLLDIYSRSDIT 292
             +P+VDD  +L  I S  DIT
Sbjct: 99  RHLPVVDDKGNLKGIISIRDIT 120

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 23/141 (16%), Positives = 55/141 (39%), Gaps = 39/141 (27%)

Query: 252 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI-TALAKDKAYAQIHLDE--- 307
            +    +  A   +++  +SS+P++DD + ++ I + +DI   L +DK   +  + +   
Sbjct: 21  AKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRDKYTLETTIGDVMT 80

Query: 308 ---------MNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIV 358
                     +I +A++                 M +                + +L +V
Sbjct: 81  KDVITIHEDASILEAIKK----------------MDISGKKEEI---------INQLPVV 115

Query: 359 EAGSKRVEGIISLSDVFRFLL 379
           +  + ++ GIIS  D+ R + 
Sbjct: 116 D-KNNKLVGIISDGDIIRTIS 135

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 26/138 (18%), Positives = 44/138 (31%), Gaps = 27/138 (19%)

Query: 252 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIH 311
           L  T +L  A  L+   D+  +PIVD N  LL I S+ D   L   +  +     + +  
Sbjct: 18  LLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRD---LLAAQESSLQRSAQGDSL 74

Query: 312 QALQLGQD--------ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSK 363
                  +          P                 L +    +    +  L +V     
Sbjct: 75  AFETPLFEVMHTDVTSVAP--------------QAGLKESAIYMQKHKIGCLPVVAKD-- 118

Query: 364 RVEGIISLSDVFRFLLGV 381
            + GII+ SD     + +
Sbjct: 119 VLVGIITDSDFVTIAINL 136

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 48.7 bits (117), Expect = 2e-07
 Identities = 25/130 (19%), Positives = 51/130 (39%), Gaps = 22/130 (16%)

Query: 252 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDKAYAQIHLDEMNI 310
           +  TASL   L   V+    S  +V +    + I +  D+  A+A+    A++ + E+  
Sbjct: 14  IDITASLEDVLRNYVENAKGSSVVVKEGV-RVGIVTTWDVLEAIAEGDDLAEVKVWEVME 72

Query: 311 HQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIIS 370
              + +   A                   + +  E++    V RL++ E     + G+IS
Sbjct: 73  RDLVTISPRA------------------TIKEAAEKMVKNVVWRLLVEEDD--EIIGVIS 112

Query: 371 LSDVFRFLLG 380
            +D+ R  + 
Sbjct: 113 ATDILRAKMA 122

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 42.1 bits (100), Expect = 3e-05
 Identities = 22/143 (15%), Positives = 50/143 (34%), Gaps = 28/143 (19%)

Query: 157 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 216
             +       SL++V    ++N   +  ++      G    I+   +  D+L+ I     
Sbjct: 9   TDVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVG----IV---TTWDVLEAIAEGDD 61

Query: 217 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 276
            +                     ++ E   R    + P A++  A   +V+  V  + + 
Sbjct: 62  LAEV-------------------KVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVE 102

Query: 277 DDNDSLLDIYSRSDIT-ALAKDK 298
           +D D ++ + S +DI  A    +
Sbjct: 103 ED-DEIIGVISATDILRAKMAKR 124

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* Length = 185

 Score = 49.5 bits (118), Expect = 3e-07
 Identities = 22/140 (15%), Positives = 53/140 (37%), Gaps = 11/140 (7%)

Query: 251 MLRPTASLGSALALLVQADVSSIPIVDDNDS--LLDIYSRSDITALAKDKAYAQIHLDEM 308
           + + + ++     ++ +   S  P+V   +S  L+    R D+    ++    Q  +   
Sbjct: 29  LTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVST 88

Query: 309 NIHQALQLGQDANPSLGFNGQRCQMCLRS-------DPLHKVMERLANPGVRRLVIVEAG 361
           +I    +      P      +   +   S        P+  V++     G+R+ ++   G
Sbjct: 89  SIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNG 148

Query: 362 SKRVEGIISLSDVFRFLLGV 381
             R+ GII+  DV + +  +
Sbjct: 149 --RLLGIITKKDVLKHIAQM 166

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 47.8 bits (114), Expect = 1e-06
 Identities = 15/128 (11%), Positives = 39/128 (30%), Gaps = 24/128 (18%)

Query: 252 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIH 311
           +  +A++   L  + Q   +   + D       + ++ D+     D        +++++ 
Sbjct: 26  VEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDL----LDLDLDSSVFNKVSLP 81

Query: 312 QALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISL 371
                                     D +   +          L +V+    R++G +SL
Sbjct: 82  D-------------------FFVHEEDNITHALLLFLEHQEPYLPVVD-EEMRLKGAVSL 121

Query: 372 SDVFRFLL 379
            D    L+
Sbjct: 122 HDFLEALI 129

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 45.6 bits (109), Expect = 2e-06
 Identities = 28/132 (21%), Positives = 59/132 (44%), Gaps = 28/132 (21%)

Query: 252 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDKAYAQIHLDEM-- 308
                S+  A  +L++ +++ +PIVD++  L+ I +  DI  ALA++K   +   + M  
Sbjct: 14  AHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQNKKTIE---EIMTR 70

Query: 309 NIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGI 368
           N+  A +                      +P+  V  +++   +  + +V+   +RV GI
Sbjct: 71  NVITAHE---------------------DEPVDHVAIKMSKYNISGVPVVD-DYRRVVGI 108

Query: 369 ISLSDVFRFLLG 380
           ++  D+ R   G
Sbjct: 109 VTSEDISRLFGG 120

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 46.3 bits (110), Expect = 7e-06
 Identities = 37/238 (15%), Positives = 89/238 (37%), Gaps = 42/238 (17%)

Query: 157 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 216
           R +      D+LK+ A  +L+     V ++ S G      + + + ++ DI++      +
Sbjct: 68  RDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKG------KPVGILTVGDIIRRYFAKSE 121

Query: 217 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 276
                                   I     R  +++     L +AL  L+ ++  ++P+V
Sbjct: 122 KYKGV------------------EIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVV 163

Query: 277 DDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLR 336
           D   +L+ I   +D+  L   +    +   E+      +   +++P+L F     Q+  +
Sbjct: 164 DSEGNLVGIVDETDL--LRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNK 221

Query: 337 ---------------SDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 379
                             +H+V  ++A   + +L ++      + G+I   D+ + L+
Sbjct: 222 PVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLI-GLIRDFDLLKVLV 278

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 34/253 (13%), Positives = 67/253 (26%), Gaps = 59/253 (23%)

Query: 65  VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTE 124
                 N  +K+A  ++ E     V + D  KG+ VG+L+  D I            +  
Sbjct: 71  PVV-KENDTLKKAAKLMLEYDYRRVVVVDS-KGKPVGILTVGDIIRRYFAKSEKYKGVEI 128

Query: 125 EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVP 184
           E                               R +        LK     +L +    +P
Sbjct: 129 EPYYQ---------------------------RYVSIVWEGTPLKAALKALLLSNSMALP 161

Query: 185 II----HSTG-------------PAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQ 227
           ++    +  G                     L  +S  + +             L +  +
Sbjct: 162 VVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNK 221

Query: 228 PVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYS 287
           PV+ I                     P  ++      + +  +  +P++     L+ +  
Sbjct: 222 PVAEI-----------MTRDVIVA-TPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIR 269

Query: 288 RSDIT-ALAKDKA 299
             D+   L K KA
Sbjct: 270 DFDLLKVLVKSKA 282

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 44.0 bits (104), Expect = 4e-05
 Identities = 25/131 (19%), Positives = 48/131 (36%), Gaps = 30/131 (22%)

Query: 252 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEM--- 308
           +   A+   AL L  +  V S P+V+    L+ I S   I  +  D    +  L  +   
Sbjct: 14  ITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRI-LVNPD----EEQLAMLVKR 68

Query: 309 NIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGI 368
           ++    +                     +D L K  + +     RR+V+V+    +  GI
Sbjct: 69  DVPVVKE---------------------NDTLKKAAKLMLEYDYRRVVVVD-SKGKPVGI 106

Query: 369 ISLSDVFRFLL 379
           +++ D+ R   
Sbjct: 107 LTVGDIIRRYF 117

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 27/154 (17%), Positives = 57/154 (37%), Gaps = 11/154 (7%)

Query: 64  KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI-LILRELGTNGSNL 122
            V+ +     +K A   L       +P+  D +G  VG++   D +           + L
Sbjct: 135 YVSIVWEGTPLKAALKALLLSNSMALPV-VDSEGNLVGIVDETDLLRDSEIVRIMKSTEL 193

Query: 123 TEEELETHTISAWKVGKLQLNLKRQMDGNGRP-CPRPLVQAGPYDSLKEVALKILQNKVA 181
                E   + +      +    +  +        R ++ A P+ ++ EVALK+ +  + 
Sbjct: 194 AASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIE 253

Query: 182 TVPIIHSTG-PAGSCQEILYLASLSDILKCICRH 214
            +P+I   G   G    ++      D+LK + + 
Sbjct: 254 QLPVIRGEGDLIG----LIR---DFDLLKVLVKS 280

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 2e-05
 Identities = 55/405 (13%), Positives = 113/405 (27%), Gaps = 118/405 (29%)

Query: 21  EDYLDRTFEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHV 80
             + D   + F      D +  +D   S LS   +  ++     V+           F  
Sbjct: 23  SVFEDAFVDNF------DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR------LFWT 70

Query: 81  LYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGT--NGSNLTEEELETHTISAWKVG 138
           L  +   MV        +FV  +  +++  ++  + T     ++            +   
Sbjct: 71  LLSKQEEMVQ-------KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123

Query: 139 KLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQ--NKVATVPIIHSTGPAGS-- 194
             Q+  K  +        R      PY  L++ AL  L+    V    +I   G  GS  
Sbjct: 124 --QVFAKYNV-------SRL----QPYLKLRQ-ALLELRPAKNV----LID--GVLGSGK 163

Query: 195 -------CQ----------EILYL--------ASLSDILKCICRHFKHSSSSLPILQQPV 229
                  C           +I +L         ++ ++L+ +      + +S        
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS---DHS 220

Query: 230 SSIQLGTWVPRIGEANGRP--FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYS 287
           S+I+L     RI             +P  +      LLV  +V +    +      ++  
Sbjct: 221 SNIKL-----RIHSIQAELRRLLKSKPYEN-----CLLVLLNVQNAKAWNA----FNLSC 266

Query: 288 R-------SDITALAKDKAYAQIHLDEMNI----HQALQL-----GQDAN--PSLGFNGQ 329
           +         +T          I LD  ++     +   L            P       
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR------ 320

Query: 330 RCQMCLRSDPLHKVM--ERLANPGVRRLVIVEAGSKRVEGIISLS 372
             ++   + P    +  E + +              ++  II  S
Sbjct: 321 --EVLTTN-PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 25/128 (19%), Positives = 48/128 (37%), Gaps = 17/128 (13%)

Query: 252 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDKAYAQIHLDEMNI 310
           ++    L  AL +LV++  S+IP++D    L  + S + I   +   +      L+EM +
Sbjct: 30  VQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGILGLERIEFERLEEMKV 89

Query: 311 HQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIIS 370
            Q +   +   P L             D   K +E   +      +         EGI++
Sbjct: 90  EQVM---KQDIPVLKLE----------DSFAKALEMTID---HPFICAVNEDGYFEGILT 133

Query: 371 LSDVFRFL 378
              + + L
Sbjct: 134 RRAILKLL 141

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 27/162 (16%), Positives = 56/162 (34%), Gaps = 32/162 (19%)

Query: 54  TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR 113
            V +L+  S KV  + +   ++ A  VL + G   +P+ D    +  G++S      IL 
Sbjct: 16  FVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDP-MYKLHGLISTAM---ILD 71

Query: 114 ELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVAL 173
            +      L  E +E   +   KV ++       M        + +      DS  +   
Sbjct: 72  GI------LGLERIEFERLEEMKVEQV-------MK-------QDIPVLKLEDSFAKALE 111

Query: 174 KILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHF 215
             + +    +  ++  G          + +   ILK + +  
Sbjct: 112 MTIDHPF--ICAVNEDG------YFEGILTRRAILKLLNKKV 145

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 42.8 bits (101), Expect = 4e-05
 Identities = 20/136 (14%), Positives = 50/136 (36%), Gaps = 24/136 (17%)

Query: 157 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTG-PAGSCQEILYLASLSDILKCICRHF 215
             +    P + L    L + +   + +P++ ++    G    ++   S++ ++  I    
Sbjct: 21  DKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHG----LI---SMTMMMDAILGLE 73

Query: 216 KHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPI 275
           +     L  +              ++ E   R    LR   SL  A+ L+V      + +
Sbjct: 74  RIEFERLETM--------------KVEEVMNRNIPRLRLDDSLMKAVGLIVNHPF--VCV 117

Query: 276 VDDNDSLLDIYSRSDI 291
            +D+     I++R ++
Sbjct: 118 ENDDGYFAGIFTRREV 133

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 42.0 bits (99), Expect = 6e-05
 Identities = 25/127 (19%), Positives = 49/127 (38%), Gaps = 15/127 (11%)

Query: 252 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIH 311
           ++P   L  AL +L +   S+IP++D +  L  + S + +  +       +I  + +   
Sbjct: 26  VQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMM--MDAILGLERIEFERLETM 83

Query: 312 QALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISL 371
           +  ++     P L  +          D L K +  + N      V VE       GI + 
Sbjct: 84  KVEEVMNRNIPRLRLD----------DSLMKAVGLIVN---HPFVCVENDDGYFAGIFTR 130

Query: 372 SDVFRFL 378
            +V + L
Sbjct: 131 REVLKQL 137

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 41.7 bits (98), Expect = 8e-05
 Identities = 27/130 (20%), Positives = 52/130 (40%), Gaps = 17/130 (13%)

Query: 250 AMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDKAYAQIHLDEM 308
           A ++   +L  AL +L +   ++IP++D +  L  +   + I  ++   +      LD++
Sbjct: 27  AHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEFEKLDQI 86

Query: 309 NIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGI 368
            + + +       P L  N          DP+ K    + N      V VE   +  EGI
Sbjct: 87  TVEEVM---LTDIPRLHIN----------DPIMKGFGMVIN---NGFVCVENDEQVFEGI 130

Query: 369 ISLSDVFRFL 378
            +   V + L
Sbjct: 131 FTRRVVLKEL 140

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 12/128 (9%), Positives = 38/128 (29%), Gaps = 22/128 (17%)

Query: 164 PYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLP 223
             ++L+   L + +     +P++  +        +  L   + I+  I    +     L 
Sbjct: 31  VGNNLEHALLVLTKTGYTAIPVLDPSY------RLHGLIGTNMIMNSIFGLERIEFEKLD 84

Query: 224 ILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLL 283
            +               + E        L     +     +++  +   + + +D     
Sbjct: 85  QI--------------TVEEVMLTDIPRLHINDPIMKGFGMVI--NNGFVCVENDEQVFE 128

Query: 284 DIYSRSDI 291
            I++R  +
Sbjct: 129 GIFTRRVV 136

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* Length = 245

 Score = 41.1 bits (95), Expect = 3e-04
 Identities = 37/262 (14%), Positives = 91/262 (34%), Gaps = 33/262 (12%)

Query: 52  THTVYELLPD--SGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI 109
           +H V   + D    K+  L   +++K A++++ ++ L  +P+ D      +G+LS  +  
Sbjct: 2   SHMVKLKVEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADG-NNHLLGMLSTSNIT 60

Query: 110 LILRELGTNGSNLTEEELETHTISAWK-------------VGKLQLNLKRQMDGNGRPCP 156
               ++  +           + +                  GK+ +   +          
Sbjct: 61  ATYMDIWDSNILAKSATSLDNILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISE 120

Query: 157 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 216
             +  AG    ++   ++        V ++  TG     +EI+ LA  ++I      H  
Sbjct: 121 GDIAIAGDRAEIQAELIE------LKVSLLIVTGGHTPSKEIIELAKKNNITVITTPHDS 174

Query: 217 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 276
            ++S L +   PV  +                   +     +      + +   S+ P++
Sbjct: 175 FTASRLIVQSLPVDYVM-----------TKDNLVAVSTDDLVEDVKVTMSETRYSNYPVI 223

Query: 277 DDNDSLLDIYSRSDITALAKDK 298
           D+N+ ++   +R  + +  K K
Sbjct: 224 DENNKVVGSIARFHLISTHKKK 245

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* Length = 245

 Score = 39.5 bits (91), Expect = 9e-04
 Identities = 21/92 (22%), Positives = 36/92 (39%)

Query: 239 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK 298
            ++ +      A L P  SL  A  ++   ++ SIP+ D N+ LL + S S+ITA   D 
Sbjct: 7   LKVEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMDI 66

Query: 299 AYAQIHLDEMNIHQALQLGQDANPSLGFNGQR 330
             + I          +     A        ++
Sbjct: 67  WDSNILAKSATSLDNILDTLSAEAQNINEERK 98

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	381
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	100.0
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	100.0
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	100.0
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	100.0
3ddj_A	296	CBS domain-containing protein; structural genomics	100.0
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.97
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.92
3ddj_A	296	CBS domain-containing protein; structural genomics	99.9
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.88
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.88
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.86
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.86
4esy_A	170	CBS domain containing membrane protein; structural	99.84
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.8
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.8
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.79
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.78
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.78
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.78
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.78
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.77
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.77
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.77
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.76
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.76
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.76
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.76
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.76
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.76
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.76
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.76
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.75
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.75
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.75
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.75
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.75
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.75
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.74
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.74
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.74
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.73
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.73
4esy_A	170	CBS domain containing membrane protein; structural	99.73
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.73
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.73
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.72
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.72
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.72
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.72
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.72
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.71
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.7
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.69
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.69
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.68
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.68
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.68
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.68
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.67
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.67
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.66
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.65
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.64
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.64
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.64
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.63
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.63
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.63
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.63
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.62
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.62
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.62
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.62
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.61
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.61
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.61
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.61
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.61
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.61
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.6
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.6
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.59
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.59
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.59
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.59
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.59
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.59
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.59
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.58
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.58
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.57
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.57
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.56
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.54
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.54
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.54
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.53
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.53
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.53
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.53
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.52
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.52
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.5
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.49
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.46
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.4
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.4
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.38
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.37
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.35
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.33
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.31
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.29
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.29
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.26
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.25
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.24
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.21
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.19
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.19
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	99.14
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	99.12
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	99.04
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	98.99
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	98.98
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	98.84
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.74
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.58

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=100.00  E-value=2.1e-42  Score=327.74  Aligned_cols=309  Identities=25%  Similarity=0.445  Sum_probs=248.4

Q ss_pred             cHHHHHHHHHHHHHHhhhCcccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeecccCCCCcEEEEeehHHHHHHHHH
Q 016866           35 SEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE  114 (381)
Q Consensus        35 ~~~~~~~~~~~~~~~l~~~~~~d~~p~s~~vi~ld~~~~v~~A~~~l~~~~i~~~pV~d~~~~~~vGilt~~D~~~il~~  114 (381)
                      .+.+.+...+++.+||++++|||+||.+.++++++.+.|+.+|++.|.+++++++||||++.++++|++|..|++.++..
T Consensus        12 ~~~~~~~~~~~i~~~l~~~~~~d~m~~~~~~v~v~~~~sv~~a~~~m~~~~~~~~pV~d~~~~~lvGilt~~Dl~~~l~~   91 (323)
T 3t4n_C           12 VSIEQQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFINVIQY   91 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHTTCSCEEEEETTTTEEEEEECHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHhCchHhhCCCCCcEEEEcCCCcHHHHHHHHHHcCCceEEEEeCCCCeEEEEEEHHHHHHHHHH
Confidence            34555668899999999999999999999999999999999999999999999999999887789999999999998876


Q ss_pred             hccCCCCCChhHHhhccHHHHHHHHHhhhccccCCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCC
Q 016866          115 LGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGS  194 (381)
Q Consensus       115 ~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~  194 (381)
                      +...+..  .+.++.+....|++.....+          .|.++++++.+++++.+|++.|.+++++++||++++..++ 
T Consensus        92 ~~~~~~~--~~~l~~~~~~~v~~i~~~~~----------~~~~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~-  158 (323)
T 3t4n_C           92 YFSNPDK--FELVDKLQLDGLKDIERALG----------VDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETH-  158 (323)
T ss_dssp             HHHCGGG--GGGGGGCBHHHHHHHHHHTT----------C----CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTTC-
T ss_pred             HHcCcch--hHHHHHHHHHHHHHHHHHhC----------CCCCCceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCCC-
Confidence            6553322  23555556666776655433          6788999999999999999999999999999998732222 


Q ss_pred             ccceEEEeehhhHHHHHhhhcccCCCCCccccCccccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEE
Q 016866          195 CQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIP  274 (381)
Q Consensus       195 ~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lp  274 (381)
                      .+.++|++|.+|+++++..+...    ......+++++.++         |.++++++.+++++.+|++.|.+++++++|
T Consensus       159 ~~~l~Givt~~di~~~l~~~~~~----~~~~~~~v~~~~~~---------m~~~~~~v~~~~~~~~~~~~m~~~~~~~~p  225 (323)
T 3t4n_C          159 REIVVSVLTQYRILKFVALNCRE----THFLKIPIGDLNII---------TQDNMKSCQMTTPVIDVIQMLTQGRVSSVP  225 (323)
T ss_dssp             CEEEEEEEEHHHHHHHHHHHCGG----GGGCCSBGGGTTCS---------BCTTCCCBCTTSBHHHHHHHHHHHTCSEEE
T ss_pred             ccceEEEecHHHHHHHHHhcCCc----hhhhhCcHHHcCCC---------CCCCcEEECCCCcHHHHHHHHHHcCCCEEE
Confidence            11299999999999998766533    12233344443221         667899999999999999999999999999


Q ss_pred             EEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCE
Q 016866          275 IVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRR  354 (381)
Q Consensus       275 Vvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~  354 (381)
                      |+|++|+++|++|.+|+++++..+.+...   +.++.+++.....       ...++++|.+++++.+|++.|.++++++
T Consensus       226 Vvd~~~~~~Giit~~dl~~~~~~~~~~~~---~~~v~~~m~~~~~-------~~~~~~~v~~~~~l~~~~~~m~~~~~~~  295 (323)
T 3t4n_C          226 IIDENGYLINVYEAYDVLGLIKGGIYNDL---SLSVGEALMRRSD-------DFEGVYTCTKNDKLSTIMDNIRKARVHR  295 (323)
T ss_dssp             EECTTCBEEEEEETTHHHHHHHTTHHHHT---TSBHHHHGGGSCT-------TCCCCEEECTTCBHHHHHHHHHHSCCCE
T ss_pred             EECCCCeEEEEEeHHHHHHHHhhchhhhc---cCCHHHHHhhccc-------cCCCCEEECCCCCHHHHHHHHHHhCCCE
Confidence            99999999999999999998775543332   4678885543110       0026899999999999999999999999


Q ss_pred             EEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866          355 LVIVEAGSKRVEGIISLSDVFRFLLG  380 (381)
Q Consensus       355 l~Vvd~~~~~liGiIs~~DIl~~l~~  380 (381)
                      +||+| ++|+++|+||.+||++++++
T Consensus       296 l~Vvd-~~~~l~Giit~~Dil~~l~~  320 (323)
T 3t4n_C          296 FFVVD-DVGRLVGVLTLSDILKYILL  320 (323)
T ss_dssp             EEEEC-TTSBEEEEEEHHHHHHHHHH
T ss_pred             EEEEC-CCCcEEEEEEHHHHHHHHHh
Confidence            99999 47999999999999999975

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=100.00  E-value=3.7e-36  Score=286.01  Aligned_cols=306  Identities=22%  Similarity=0.434  Sum_probs=237.6

Q ss_pred             HHHHHHHHHHHHHhhhCcccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeecccCCCCcEEEEeehHHHHHHHHHhc
Q 016866           37 ADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELG  116 (381)
Q Consensus        37 ~~~~~~~~~~~~~l~~~~~~d~~p~s~~vi~ld~~~~v~~A~~~l~~~~i~~~pV~d~~~~~~vGilt~~D~~~il~~~~  116 (381)
                      .+.+...+.+.+||...+++|+|+.+.++++++.+.|+.+|++.|.+++++++||||++.++++|+++..|++..+....
T Consensus         6 ~~~~~~~~~~~~~l~~~~v~dim~~~~~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d~~~~~~vGiv~~~Dl~~~~~~~~   85 (334)
T 2qrd_G            6 ETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYY   85 (334)
T ss_dssp             HHHHHHHHHHHHHHHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCchhhhCCCCCCEEEEcCCCCHHHHHHHHHHcCCeEEEEEeCCCCeEEEEEEHHHHHHHHHHHh
Confidence            34455788999999999999999999999999999999999999999999999999987678999999999998775442


Q ss_pred             cCC-CCCChhHHhhccHHHHHHHHHhhhccccCCCCCCCCCCCc--eEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCC
Q 016866          117 TNG-SNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPL--VQAGPYDSLKEVALKILQNKVATVPIIHSTGPAG  193 (381)
Q Consensus       117 ~~~-~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~--i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g  193 (381)
                      ... .....+.+....+..+.+....            +|..+.  +++.+++++.+|++.|.+++++++||+|++  .+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~i~~~l~~------------im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~--~~  151 (334)
T 2qrd_G           86 QSSSFPEAIAEIDKFRLLGLREVERK------------IGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVD--GE  151 (334)
T ss_dssp             HHCSCGGGGGGGGSCBHHHHHHHHHH------------HTCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEE--TT
T ss_pred             hccCCccHHHHHhhhchhhHHHHHHh------------hccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCC--CC
Confidence            210 0001123345566666655432            345566  999999999999999999999999999762  12


Q ss_pred             -CccceEEEeehhhHHHHHhhhcccCCCCCccccCccccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcE
Q 016866          194 -SCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSS  272 (381)
Q Consensus       194 -~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~  272 (381)
                       ..+.++|++|..|+++++.......    .....+++++         +.+|.+++.++.+++++.+|++.|.++++++
T Consensus       152 ~~~~~~~Givt~~dl~~~~~~~~~~~----~~~~~~v~~l---------~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~  218 (334)
T 2qrd_G          152 TGSEMIVSVLTQYRILKFISMNCKET----AMLRVPLNQM---------TIGTWSNLATASMETKVYDVIKMLAEKNISA  218 (334)
T ss_dssp             TTEEEEEEEEEHHHHHHHHHHHCGGG----GGCCCBGGGS---------SCSBCSSCCCBCTTSBHHHHHHHHHHHTCSE
T ss_pred             cCccceEEEeeHHHHHHHHHhhccch----hhhhCcHHHh---------CCcccCCceEECCCCcHHHHHHHHHHcCCcE
Confidence             0012999999999999887542210    1122233322         1137788999999999999999999999999


Q ss_pred             EEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCC
Q 016866          273 IPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGV  352 (381)
Q Consensus       273 lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~  352 (381)
                      +||+|++|+++|++|.+|+++.+..+.+...   +.++.+++.....   .  +  .++.+|.+++++.+|++.|.++++
T Consensus       219 ~~Vvd~~~~~~Giit~~dl~~~~~~~~~~~~---~~~v~~~m~~~~~---~--~--~~~~~v~~~~~l~~~~~~m~~~~~  288 (334)
T 2qrd_G          219 VPIVNSEGTLLNVYESVDVMHLIQDGDYSNL---DLSVGEALLKRPA---N--F--DGVHTCRATDRLDGIFDAIKHSRV  288 (334)
T ss_dssp             EEEECTTCBEEEEEETHHHHHHHTTSCGGGG---GSBHHHHHTTCCT---T--C--CCCCEECTTCBHHHHHHHHHHSCC
T ss_pred             EEEEcCCCcEEEEEEHHHHHHHhhccccccc---cCcHHHHHhcccc---c--C--CCCEEECCCCcHHHHHHHHHHcCC
Confidence            9999988999999999999997765433222   3677774432000   0  0  368899999999999999999999


Q ss_pred             CEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866          353 RRLVIVEAGSKRVEGIISLSDVFRFLLG  380 (381)
Q Consensus       353 ~~l~Vvd~~~~~liGiIs~~DIl~~l~~  380 (381)
                      +++||+| ++|+++|+||.+||++++.+
T Consensus       289 ~~l~Vvd-~~g~l~Giit~~dil~~~~~  315 (334)
T 2qrd_G          289 HRLFVVD-ENLKLEGILSLADILNYIIY  315 (334)
T ss_dssp             CEEEEEC-TTCBEEEEEEHHHHHHHHHS
T ss_pred             CEEEEEC-CCCeEEEEEeHHHHHHHHHh
Confidence            9999999 47999999999999999864

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=100.00  E-value=3.8e-36  Score=285.57  Aligned_cols=300  Identities=32%  Similarity=0.554  Sum_probs=239.6

Q ss_pred             HHHHHHHHHhhhCcccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeecccCCCCcEEEEeehHHHHHHHHHhccCCC
Q 016866           41 LSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGS  120 (381)
Q Consensus        41 ~~~~~~~~~l~~~~~~d~~p~s~~vi~ld~~~~v~~A~~~l~~~~i~~~pV~d~~~~~~vGilt~~D~~~il~~~~~~~~  120 (381)
                      ..++.+++||.+.+++|+|+.+.++++++.+.|+.+|++.|.+++++++||+|.+.++++|++|..|++..+......+.
T Consensus        23 ~~~~~~~~~l~~~~v~dim~p~~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~~~~~~vGivt~~Dll~~l~~~~~~~~  102 (330)
T 2v8q_E           23 SNSSVYTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSAL  102 (330)
T ss_dssp             CCSCHHHHHHHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHT
T ss_pred             hhhHHHHHHHHcCcHhhhccCCCcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeCCCCeEEEEEEHHHHHHHHHHHHhccc
Confidence            35678999999999999999999999999999999999999999999999999876789999999999987754331110


Q ss_pred             CCChhHHhhccHHHHHHHHHhhhccccCCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEE
Q 016866          121 NLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILY  200 (381)
Q Consensus       121 ~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~g  200 (381)
                       ....+++...+..|.....            .+|.++++++.+++++.+|++.|.+++++++||+|+  +.|   +++|
T Consensus       103 -~~~~~l~~~~~~~~~~~~~------------~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~--~~~---~~~G  164 (330)
T 2v8q_E          103 -VQIYELEEHKIETWREVYL------------QDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDP--ESG---NTLY  164 (330)
T ss_dssp             -TTCCCGGGCBHHHHHHHHS------------SSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECT--TTC---CEEE
T ss_pred             -cchhHHhhccHHHHHHHHh------------hcccCCceEeCCCCCHHHHHHHHHHCCCCeEEEEeC--CCC---cEEE
Confidence             1112344445666654322            268899999999999999999999999999999963  236   7999


Q ss_pred             EeehhhHHHHHhhhcccCCCCCccccCccccccccccccccccccC-CCceEecCCCCHHHHHHHHHhCCCcEEEEEcCC
Q 016866          201 LASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANG-RPFAMLRPTASLGSALALLVQADVSSIPIVDDN  279 (381)
Q Consensus       201 ils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~~~~v~~~~~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~  279 (381)
                      ++|..|+++++.......+ .......+++++.+          |. +++.++.+++++.++++.|.+++++++||+|++
T Consensus       165 ivt~~dl~~~~~~~~~~~~-~~~~~~~~v~~~~v----------~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~  233 (330)
T 2v8q_E          165 ILTHKRILKFLKLFITEFP-KPEFMSKSLEELQI----------GTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEK  233 (330)
T ss_dssp             EECHHHHHHHHHHHSCSSS-CCGGGGSBHHHHTC----------SBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTT
T ss_pred             EEcHHHHHHHHHHHhhccC-chhhhcCCHHHhcc----------cCcCCceEECCCCCHHHHHHHHHHcCCCeEEEECCC
Confidence            9999999998876543211 01123334444322          32 578899999999999999999999999999989


Q ss_pred             CcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEe
Q 016866          280 DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVE  359 (381)
Q Consensus       280 g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd  359 (381)
                      |+++|++|.+|+++....+.+...   +.++.+++..+.       .|..++.+|.+++++.+|++.|.+++++++||+|
T Consensus       234 ~~l~Giit~~dl~~~~~~~~~~~~---~~~v~~~~~~~~-------~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd  303 (330)
T 2v8q_E          234 GRVVDIYSKFDVINLAAEKTYNNL---DVSVTKALQHRS-------HYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVD  303 (330)
T ss_dssp             SBEEEEEEGGGTGGGGGSSCCCCC---SSBHHHHGGGCC-------SCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             CcEEEEEEHHHHHHHHhccccccc---cCcHHHHHhccc-------cccCCCeEECCCCcHHHHHHHHHHCCCcEEEEEc
Confidence            999999999999986654333222   467888664322       4567899999999999999999999999999999


Q ss_pred             CCCCeEEEEEehHHHHHHhhc
Q 016866          360 AGSKRVEGIISLSDVFRFLLG  380 (381)
Q Consensus       360 ~~~~~liGiIs~~DIl~~l~~  380 (381)
                      + +|+++|+||.+||++++..
T Consensus       304 ~-~g~l~Giit~~Dil~~~~~  323 (330)
T 2v8q_E          304 E-HDVVKGIVSLSDILQALVL  323 (330)
T ss_dssp             T-TSBEEEEEEHHHHHHHHHS
T ss_pred             C-CCcEEEEEeHHHHHHHHHh
Confidence            4 7999999999999999864

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=100.00  E-value=2.1e-33  Score=259.89  Aligned_cols=270  Identities=14%  Similarity=0.283  Sum_probs=208.7

Q ss_pred             cccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeecccCCCCcEEEEeehHHHHHHHHHhccCCCCCChhHHhhccHH
Q 016866           54 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTIS  133 (381)
Q Consensus        54 ~~~d~~p~s~~vi~ld~~~~v~~A~~~l~~~~i~~~pV~d~~~~~~vGilt~~D~~~il~~~~~~~~~~~~~~l~~~~i~  133 (381)
                      ++.+.+.. .++++++++.|+.+|++.|.+++++++||+|++.++++|++|..|++..+.....      ...++.....
T Consensus         4 ~v~~~i~~-~~~~~v~~~~sl~~a~~~m~~~~~~~lpV~d~~~~~~~Givt~~di~~~~~~~~~------~~~~~~~~~~   76 (280)
T 3kh5_A            4 RVMKIAQN-KKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSK------YNLIREKHER   76 (280)
T ss_dssp             BGGGTSCC-SCCCCBCTTSBHHHHHHHHHHHCCCEEEEECTTTCBEEEEEEHHHHHHHTTTSGG------GHHHHTTSTT
T ss_pred             hHHHHhcC-CCcEEECCCCcHHHHHHHHHhCCCcEeeEEECCCCeEEEEEEHHHHHHHhcccch------hhhhhhcccc
Confidence            34555554 3799999999999999999999999999999866789999999999986531110      0001100000


Q ss_pred             HHHHHHHhhhccccCCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhh
Q 016866          134 AWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICR  213 (381)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~  213 (381)
                      .+...        ....++.+|.++++++.+++++.+|++.|.+++++++||+|+   +|   +++|++|..|+++++..
T Consensus        77 ~~~~~--------~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~  142 (280)
T 3kh5_A           77 NFLAA--------INEPVREIMEENVITLKENADIDEAIETFLTKNVGGAPIVND---EN---QLISLITERDVIRALLD  142 (280)
T ss_dssp             CHHHH--------TTSBGGGTSBCSCCCEETTCBHHHHHHHHHHTTCSEEEEECT---TC---BEEEEEEHHHHHHHHGG
T ss_pred             chhHH--------hhhhHHHhcCCCCEEECCCCCHHHHHHHHHhCCCCEEEEEcC---CC---EEEEEEEHHHHHHHHhh
Confidence            00000        011123478889999999999999999999999999999976   57   89999999999997754


Q ss_pred             hcccCCCCCccccCccccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866          214 HFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  293 (381)
Q Consensus       214 ~~~~~~~~~~~~~~~i~~l~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  293 (381)
                      ....        .            ..++++|.+++.++.+++++.++++.|.+++++++||+ ++|+++|++|.+|+++
T Consensus       143 ~~~~--------~------------~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv-~~~~~~Givt~~dl~~  201 (280)
T 3kh5_A          143 KIDE--------N------------EVIDDYITRDVIVATPGERLKDVARTMVRNGFRRLPVV-SEGRLVGIITSTDFIK  201 (280)
T ss_dssp             GSCT--------T------------CBSGGGCBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEE-ETTEEEEEEEHHHHHH
T ss_pred             cCCC--------C------------CCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEE-ECCEEEEEEEHHHHHH
Confidence            3211        1            13455688889999999999999999999999999999 5899999999999998


Q ss_pred             HHhhhhh-cccc------cccccHHHHHhcCCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEE
Q 016866          294 LAKDKAY-AQIH------LDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVE  366 (381)
Q Consensus       294 l~~~~~~-~~~~------~~~~~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~li  366 (381)
                      ....+.. ....      ..+.++.+             +|..++.+|++++++.+|++.|.+++++++||+| ++|+++
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~v~~-------------~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~~g~~~  267 (280)
T 3kh5_A          202 LLGSDWAFNHMQTGNVREITNVRMEE-------------IMKRDVITAKEGDKLKKIAEIMVTNDIGALPVVD-ENLRIK  267 (280)
T ss_dssp             HHTSHHHHHHHHSCCTHHHHHCBHHH-------------HSBSSCCCBCTTCBHHHHHHHHHHHTCCEEEEEC-TTCBEE
T ss_pred             HHhhhhhhhhhcccchhhhhCCcHHH-------------HhcCCCEEECCCCCHHHHHHHHHHCCCCEEEEEC-CCCeEE
Confidence            7653221 1000      01234444             6777899999999999999999999999999999 468999


Q ss_pred             EEEehHHHHHHhh
Q 016866          367 GIISLSDVFRFLL  379 (381)
Q Consensus       367 GiIs~~DIl~~l~  379 (381)
                      |+||.+||++++.
T Consensus       268 Givt~~dil~~la  280 (280)
T 3kh5_A          268 GIITEKDVLKYFA  280 (280)
T ss_dssp             EEEEHHHHGGGGC
T ss_pred             EEEeHHHHHHhhC
Confidence            9999999999873

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=100.00  E-value=4.4e-33  Score=260.36  Aligned_cols=264  Identities=10%  Similarity=0.098  Sum_probs=209.8

Q ss_pred             hCcccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeecccCCCCcEEEEeehHHHHHHHHHhccCCCCCChhHHhhcc
Q 016866           52 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT  131 (381)
Q Consensus        52 ~~~~~d~~p~s~~vi~ld~~~~v~~A~~~l~~~~i~~~pV~d~~~~~~vGilt~~D~~~il~~~~~~~~~~~~~~l~~~~  131 (381)
                      ..++.|+|.  .++++++++.|+.+|++.|.+++++++||+|   ++++|++|..|++..+......          ...
T Consensus        19 ~~~V~dim~--~~~~~v~~~~~v~~a~~~m~~~~~~~~~V~d---~~l~GivT~~Di~~~~~~~~~~----------~~~   83 (296)
T 3ddj_A           19 GMNIETLMI--KNPPILSKEDRLGSAFKKINEGGIGRIIVAN---EKIEGLLTTRDLLSTVESYCKD----------SCS   83 (296)
T ss_dssp             CSSGGGTCE--ESCCEECTTSBHHHHHHHTTGGGCCEEEEES---SSEEEEEEHHHHHGGGTTCC-------------CC
T ss_pred             ccCHHHhcc--CCCcEECCCccHHHHHHHHHHCCCceEEEEC---CeEEEEEeHHHHHHHhcccccc----------ccc
Confidence            356778874  4799999999999999999999999999998   6699999999998765311100          001


Q ss_pred             HHHHHHHHHhhhccccCCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHH
Q 016866          132 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI  211 (381)
Q Consensus       132 i~~~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l  211 (381)
                      ...+....        ...++.+|.++++++.+++++.+|++.|.+++++++||+|+   +|   +++|++|..|+++++
T Consensus        84 ~~~~~~~~--------~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~---~~---~lvGivt~~dl~~~~  149 (296)
T 3ddj_A           84 QGDLYHIS--------TTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDI---ND---KPVGIVTEREFLLLY  149 (296)
T ss_dssp             HHHHHHHH--------TSBGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHGGGG
T ss_pred             chhhHHHh--------cccHHHhccCCCEEEcCCCCHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEEeHHHHHHhh
Confidence            11111110        01123478889999999999999999999999999999975   56   899999999999866


Q ss_pred             hhhcccCCCCCccccCccccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHH
Q 016866          212 CRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI  291 (381)
Q Consensus       212 ~~~~~~~~~~~~~~~~~i~~l~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di  291 (381)
                      .....         .            ..++++|.+++.++.+++++.++++.|.+++++++||+|++|+++|++|.+|+
T Consensus       150 ~~~~~---------~------------~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl  208 (296)
T 3ddj_A          150 KDLDE---------I------------FPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNA  208 (296)
T ss_dssp             GGSCC---------C------------CBHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHH
T ss_pred             hcccc---------c------------ccHHHhhcCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHH
Confidence            43211         1            24456688899999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhccc---ccccccHHHHHhcCCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEE
Q 016866          292 TALAKDKAYAQI---HLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGI  368 (381)
Q Consensus       292 ~~l~~~~~~~~~---~~~~~~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGi  368 (381)
                      ++.+..... .+   ...+.++.+             +|..++.+|.+++++.+|++.|.+++++++||+| ++|+++|+
T Consensus       209 ~~~~~~~~~-~~~~~~~~~~~v~~-------------~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~~g~~~Gi  273 (296)
T 3ddj_A          209 IKQLAKAVD-KLDPDYFYGKVVKD-------------VMVTNLVTIDELASVNRAAAEMIVKRIGSLLILN-KDNTIRGI  273 (296)
T ss_dssp             HHHHHHHHH-HTCTHHHHTCBHHH-------------HSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEE
T ss_pred             HHHHHHHHh-hcChhhhcCcCHHH-------------HhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEC-CCCeEEEE
Confidence            987653211 11   011345555             6777899999999999999999999999999999 47999999


Q ss_pred             EehHHHHHHhhc
Q 016866          369 ISLSDVFRFLLG  380 (381)
Q Consensus       369 Is~~DIl~~l~~  380 (381)
                      ||.+||++++.+
T Consensus       274 it~~Dil~~l~~  285 (296)
T 3ddj_A          274 ITERDLLIALHH  285 (296)
T ss_dssp             EEHHHHHHHHHH
T ss_pred             EcHHHHHHHHHH
Confidence            999999999863

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.97  E-value=1.1e-30  Score=242.05  Aligned_cols=257  Identities=16%  Similarity=0.224  Sum_probs=180.0

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHcCCCeeecccCCCCcEEEEeehHHHHHHHHHhccCCCCCChhHHhhccHHHHHHHHHhh
Q 016866           63 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL  142 (381)
Q Consensus        63 ~~vi~ld~~~~v~~A~~~l~~~~i~~~pV~d~~~~~~vGilt~~D~~~il~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~  142 (381)
                      .++++++++.|+.+|++.|.++++.++||+|++ ++++|++|..|++..+.       ..        .           
T Consensus         9 ~~~~~v~~~~~~~~a~~~~~~~~~~~~pV~d~~-~~~~Giv~~~dl~~~~~-------~~--------~-----------   61 (282)
T 2yzq_A            9 QNPVTITLPATRNYALELFKKYKVRSFPVVNKE-GKLVGIISVKRILVNPD-------EE--------Q-----------   61 (282)
T ss_dssp             ESCCCEESSCC------------CCEEEEECTT-CCEEEEEESSCC----------------------------------
T ss_pred             CCCeEECCCCcHHHHHHHHHHcCCCeEEEEcCC-CcEEEEEEHHHHHhhhc-------cC--------C-----------
Confidence            468889999999999999999999999999974 66999999999874321       00        0           


Q ss_pred             hccccCCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHH-HHhhhcccCCCC
Q 016866          143 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK-CICRHFKHSSSS  221 (381)
Q Consensus       143 ~~~~~~~~~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~-~l~~~~~~~~~~  221 (381)
                              ++.+|..+++++.+++++.+|++.|.+++++++||+|+   +|   +++|++|..|+++ ++....      
T Consensus        62 --------v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~---~~---~~~Giit~~di~~~~~~~~~------  121 (282)
T 2yzq_A           62 --------LAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDS---KG---KPVGILTVGDIIRRYFAKSE------  121 (282)
T ss_dssp             ----------CCCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHHHTTTTCS------
T ss_pred             --------HHHHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---EEEEEEEHHHHHHHHHhccC------
Confidence                    11256777899999999999999999999999999976   46   7999999999998 664320      


Q ss_pred             CccccCccccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHH------HHH
Q 016866          222 LPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT------ALA  295 (381)
Q Consensus       222 ~~~~~~~i~~l~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~------~l~  295 (381)
                       ....            ..++++|.++++++.+++++.++++.|.+++++++||+|++|+++|++|.+|++      +..
T Consensus       122 -~~~~------------~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~~Giit~~dl~~~~~~~~~~  188 (282)
T 2yzq_A          122 -KYKG------------VEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIM  188 (282)
T ss_dssp             -GGGG------------CBSTTTSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGCGGGCC--
T ss_pred             -Cccc------------CcHHHHhCCCCEEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHhhhhhhhhhh
Confidence             0011            234556888899999999999999999999999999999889999999999998      322


Q ss_pred             hhhh--hcc-ccccc-ccHHHHHhc--CCCCCCCcc-cCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEE
Q 016866          296 KDKA--YAQ-IHLDE-MNIHQALQL--GQDANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGI  368 (381)
Q Consensus       296 ~~~~--~~~-~~~~~-~~v~~~l~~--~~~~~~~~~-~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGi  368 (381)
                      ....  ... ..+.. .....+...  ......+.+ +|++++.+|.+++++.+|++.|.+++++++||+| ++|+++|+
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~lvGi  267 (282)
T 2yzq_A          189 KSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIR-GEGDLIGL  267 (282)
T ss_dssp             ------------------------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-TTTEEEEE
T ss_pred             ccchhhhhhhhhhhcccchHHHHhHhhhhhccCCHHHhcCCCCceeCCCCCHHHHHHHHHHcCcceeEEEC-CCCCEEEE
Confidence            1000  000 00000 000000000  000122333 8989999999999999999999999999999999 46899999


Q ss_pred             EehHHHHHHhhc
Q 016866          369 ISLSDVFRFLLG  380 (381)
Q Consensus       369 Is~~DIl~~l~~  380 (381)
                      ||.+||++++..
T Consensus       268 it~~Dil~~~~~  279 (282)
T 2yzq_A          268 IRDFDLLKVLVK  279 (282)
T ss_dssp             EEHHHHGGGGCC
T ss_pred             EeHHHHHHHHHh
Confidence            999999998753

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.92  E-value=5e-24  Score=196.70  Aligned_cols=195  Identities=18%  Similarity=0.330  Sum_probs=157.7

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccC-ccccc
Q 016866          154 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQ-PVSSI  232 (381)
Q Consensus       154 ~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~-~i~~l  232 (381)
                      +|.++++++++++|+.+|++.|.+++++++||+++  .+|   +++|++|.+|+++++......     ..+.. ....+
T Consensus         9 i~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpV~d~--~~~---~~~Givt~~di~~~~~~~~~~-----~~~~~~~~~~~   78 (280)
T 3kh5_A            9 AQNKKIVTVYPTTTIRKALMTMNENKYRRLPVVNA--GNN---KVVGIITSMDIVDFMGGGSKY-----NLIREKHERNF   78 (280)
T ss_dssp             SCCSCCCCBCTTSBHHHHHHHHHHHCCCEEEEECT--TTC---BEEEEEEHHHHHHHTTTSGGG-----HHHHTTSTTCH
T ss_pred             hcCCCcEEECCCCcHHHHHHHHHhCCCcEeeEEEC--CCC---eEEEEEEHHHHHHHhcccchh-----hhhhhccccch
Confidence            67889999999999999999999999999999963  246   899999999999977432211     00100 00111


Q ss_pred             cccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHH
Q 016866          233 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQ  312 (381)
Q Consensus       233 ~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~  312 (381)
                       .......++++|.++++++.+++++.+|++.|.+++++++||+|++|+++|++|.+|+++........     +.++.+
T Consensus        79 -~~~~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~-----~~~v~~  152 (280)
T 3kh5_A           79 -LAAINEPVREIMEENVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALLDKIDE-----NEVIDD  152 (280)
T ss_dssp             -HHHTTSBGGGTSBCSCCCEETTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHGGGSCT-----TCBSGG
T ss_pred             -hHHhhhhHHHhcCCCCEEECCCCCHHHHHHHHHhCCCCEEEEEcCCCEEEEEEEHHHHHHHHhhcCCC-----CCCHHH
Confidence             11123467788999999999999999999999999999999999999999999999999876533221     124444


Q ss_pred             HHhcCCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 016866          313 ALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  379 (381)
Q Consensus       313 ~l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~  379 (381)
                                   +|.+++.++++++++.++++.|.+++++++||++  +|+++|+||..|+++++.
T Consensus       153 -------------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~~~~~Givt~~dl~~~~~  204 (280)
T 3kh5_A          153 -------------YITRDVIVATPGERLKDVARTMVRNGFRRLPVVS--EGRLVGIITSTDFIKLLG  204 (280)
T ss_dssp             -------------GCBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHT
T ss_pred             -------------HhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE--CCEEEEEEEHHHHHHHHh
Confidence                         7777899999999999999999999999999996  489999999999999874

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.90  E-value=8.8e-24  Score=197.16  Aligned_cols=191  Identities=18%  Similarity=0.220  Sum_probs=157.3

Q ss_pred             CCCCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccc
Q 016866          152 GRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  231 (381)
Q Consensus       152 g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~  231 (381)
                      +.+|..+++++++++++.+|++.|.+++++++||++     |   +++|++|..||++++......        ....+.
T Consensus        23 ~dim~~~~~~v~~~~~v~~a~~~m~~~~~~~~~V~d-----~---~l~GivT~~Di~~~~~~~~~~--------~~~~~~   86 (296)
T 3ddj_A           23 ETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVAN-----E---KIEGLLTTRDLLSTVESYCKD--------SCSQGD   86 (296)
T ss_dssp             GGTCEESCCEECTTSBHHHHHHHTTGGGCCEEEEES-----S---SEEEEEEHHHHHGGGTTCC-----------CCHHH
T ss_pred             HHhccCCCcEECCCccHHHHHHHHHHCCCceEEEEC-----C---eEEEEEeHHHHHHHhcccccc--------cccchh
Confidence            347888999999999999999999999999999994     5   899999999999977532211        011111


Q ss_pred             ccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHH
Q 016866          232 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIH  311 (381)
Q Consensus       232 l~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~  311 (381)
                      + +.....+++++|.++++++.+++++.+|++.|.+++++++||+|++|+++|++|.+|+++......      ...++.
T Consensus        87 ~-~~~~~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~lvGivt~~dl~~~~~~~~------~~~~v~  159 (296)
T 3ddj_A           87 L-YHISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYKDLD------EIFPVK  159 (296)
T ss_dssp             H-HHHHTSBGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGGGGSC------CCCBHH
T ss_pred             h-HHHhcccHHHhccCCCEEEcCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHhhhccc------ccccHH
Confidence            1 001123567779889999999999999999999999999999999999999999999988654221      134676


Q ss_pred             HHHhcCCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 016866          312 QALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  379 (381)
Q Consensus       312 ~~l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~  379 (381)
                      +             +|.+++.++.+++++.++++.|.+++++++||+| ++|+++|+||..|+++++.
T Consensus       160 ~-------------~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd-~~~~~~Givt~~dl~~~~~  213 (296)
T 3ddj_A          160 V-------------FMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVID-DDNKVVGIVTVVNAIKQLA  213 (296)
T ss_dssp             H-------------HSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHHHHH
T ss_pred             H-------------hhcCCCeEECCCCCHHHHHHHHHHcCCCEEEEEc-CCCEEEEEEEHHHHHHHHH
Confidence            6             6667899999999999999999999999999999 4799999999999998864

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.88  E-value=6.3e-22  Score=186.83  Aligned_cols=200  Identities=17%  Similarity=0.262  Sum_probs=152.1

Q ss_pred             CCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccc
Q 016866          156 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLG  235 (381)
Q Consensus       156 ~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig  235 (381)
                      ..+++.+++++++.+|++.|.+++++++||+++  +.+   +++|++|..|++.++...+....     ....+......
T Consensus        39 ~~~~v~v~~~~sv~~a~~~m~~~~~~~~pV~d~--~~~---~lvGilt~~Dl~~~l~~~~~~~~-----~~~~l~~~~~~  108 (323)
T 3t4n_C           39 SYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDS--KTS---RFAGLLTTTDFINVIQYYFSNPD-----KFELVDKLQLD  108 (323)
T ss_dssp             EEEEEEEETTSBHHHHHHHHHHTTCSCEEEEET--TTT---EEEEEECHHHHHHHHHHHHHCGG-----GGGGGGGCBHH
T ss_pred             CCcEEEEcCCCcHHHHHHHHHHcCCceEEEEeC--CCC---eEEEEEEHHHHHHHHHHHHcCcc-----hhHHHHHHHHH
Confidence            356889999999999999999999999999975  345   79999999999998765432210     00111111111


Q ss_pred             ccc--cccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCc-----EEEEEeHHHHHHHHhhhhhcccccccc
Q 016866          236 TWV--PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDS-----LLDIYSRSDITALAKDKAYAQIHLDEM  308 (381)
Q Consensus       236 ~~~--~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~-----lvGiis~~Di~~l~~~~~~~~~~~~~~  308 (381)
                      .+.  ..+.++|.++++++.+++++.+|++.|.+++++++||+|+++.     ++|++|.+|+++.+...... ..+.+.
T Consensus       109 ~v~~i~~~~~~~~~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~~~l~Givt~~di~~~l~~~~~~-~~~~~~  187 (323)
T 3t4n_C          109 GLKDIERALGVDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRE-THFLKI  187 (323)
T ss_dssp             HHHHHHHHTTC----CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHHHCGG-GGGCCS
T ss_pred             HHHHHHHHhCCCCCCceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCCCccceEEEecHHHHHHHHHhcCCc-hhhhhC
Confidence            111  1234556788999999999999999999999999999998775     99999999999876532211 112234


Q ss_pred             cHHHHHhcCCCCCCCccc---CCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866          309 NIHQALQLGQDANPSLGF---NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  380 (381)
Q Consensus       309 ~v~~~l~~~~~~~~~~~~---m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~  380 (381)
                      ++.+             +   |..++.++.+++++.+|++.|.+++++++||+| ++|+++|+||.+|+++++.+
T Consensus       188 ~v~~-------------~~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd-~~~~~~Giit~~dl~~~~~~  248 (323)
T 3t4n_C          188 PIGD-------------LNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIID-ENGYLINVYEAYDVLGLIKG  248 (323)
T ss_dssp             BGGG-------------TTCSBCTTCCCBCTTSBHHHHHHHHHHHTCSEEEEEC-TTCBEEEEEETTHHHHHHHT
T ss_pred             cHHH-------------cCCCCCCCcEEECCCCcHHHHHHHHHHcCCCEEEEEC-CCCeEEEEEeHHHHHHHHhh
Confidence            5544             4   777899999999999999999999999999999 47999999999999998753

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.88  E-value=3e-22  Score=189.69  Aligned_cols=205  Identities=18%  Similarity=0.253  Sum_probs=159.8

Q ss_pred             CC--CCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccc
Q 016866          154 PC--PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  231 (381)
Q Consensus       154 ~~--~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~  231 (381)
                      +|  ..+++++++++++.+|++.|.+++++++||++++  .+   +++|++|.+|++.++...+....    .....+..
T Consensus        40 im~p~~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~~--~~---~~vGivt~~Dll~~l~~~~~~~~----~~~~~l~~  110 (330)
T 2v8q_E           40 LIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSK--KQ---SFVGMLTITDFINILHRYYKSAL----VQIYELEE  110 (330)
T ss_dssp             GSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETT--TT---EEEEEEEHHHHHHHHHHHHHHHT----TTCCCGGG
T ss_pred             hccCCCcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeCC--CC---eEEEEEEHHHHHHHHHHHHhccc----cchhHHhh
Confidence            67  7789999999999999999999999999999762  25   79999999999998765431100    00111222


Q ss_pred             ccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcC-CCcEEEEEeHHHHHHHHhhhhhc--ccccccc
Q 016866          232 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDD-NDSLLDIYSRSDITALAKDKAYA--QIHLDEM  308 (381)
Q Consensus       232 l~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGiis~~Di~~l~~~~~~~--~~~~~~~  308 (381)
                      ..+..|...++++|.++++++.+++++.+|++.|.+++++++||+|+ +|+++|++|.+|+++........  ...+...
T Consensus       111 ~~~~~~~~~~~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~  190 (330)
T 2v8q_E          111 HKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFPKPEFMSK  190 (330)
T ss_dssp             CBHHHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHHSCSSSCCGGGGS
T ss_pred             ccHHHHHHHHhhcccCCceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCCCcEEEEEcHHHHHHHHHHHhhccCchhhhcC
Confidence            33444444567789999999999999999999999999999999998 89999999999999876532110  0001123


Q ss_pred             cHHHHHhcCCCCCCCcccCC-CcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 016866          309 NIHQALQLGQDANPSLGFNG-QRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  379 (381)
Q Consensus       309 ~v~~~l~~~~~~~~~~~~m~-~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~  379 (381)
                      ++.+.           .+|. .++.++.+++++.++++.|.+++++++||+|+ +|+++|+||..|+++++.
T Consensus       191 ~v~~~-----------~v~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~-~~~l~Giit~~dl~~~~~  250 (330)
T 2v8q_E          191 SLEEL-----------QIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDE-KGRVVDIYSKFDVINLAA  250 (330)
T ss_dssp             BHHHH-----------TCSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECT-TSBEEEEEEGGGTGGGGG
T ss_pred             CHHHh-----------cccCcCCceEECCCCCHHHHHHHHHHcCCCeEEEECC-CCcEEEEEEHHHHHHHHh
Confidence            34331           1344 57889999999999999999999999999994 799999999999998765

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.86  E-value=1.4e-21  Score=180.64  Aligned_cols=173  Identities=16%  Similarity=0.232  Sum_probs=131.0

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccc
Q 016866          154 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  233 (381)
Q Consensus       154 ~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~  233 (381)
                      +|.++++++++++++.+|+++|.+++++++||+++   +|   +++|+++..|++..+.             .       
T Consensus         6 im~~~~~~v~~~~~~~~a~~~~~~~~~~~~pV~d~---~~---~~~Giv~~~dl~~~~~-------------~-------   59 (282)
T 2yzq_A            6 IMTQNPVTITLPATRNYALELFKKYKVRSFPVVNK---EG---KLVGIISVKRILVNPD-------------E-------   59 (282)
T ss_dssp             HSEESCCCEESSCC------------CCEEEEECT---TC---CEEEEEESSCC--------------------------
T ss_pred             hccCCCeEECCCCcHHHHHHHHHHcCCCeEEEEcC---CC---cEEEEEEHHHHHhhhc-------------c-------
Confidence            56778999999999999999999999999999975   56   8999999999986321             1       


Q ss_pred             ccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH-HHhhhhhcccccccccHHH
Q 016866          234 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA-LAKDKAYAQIHLDEMNIHQ  312 (381)
Q Consensus       234 ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~-l~~~~~~~~~~~~~~~v~~  312 (381)
                           ..++++|.+++.++.+++++.+|++.|.+++.+++||+|++|+++|++|.+|+++ ....+.. .   .+.++.+
T Consensus        60 -----~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~~~~-~---~~~~v~~  130 (282)
T 2yzq_A           60 -----EQLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKSEK-Y---KGVEIEP  130 (282)
T ss_dssp             ---------CCCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCSG-G---GGCBSTT
T ss_pred             -----CCHHHHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhccCC-c---ccCcHHH
Confidence                 1344557778899999999999999999999999999998899999999999998 6553210 0   0233333


Q ss_pred             HHhcCCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHH
Q 016866          313 ALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVF  375 (381)
Q Consensus       313 ~l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl  375 (381)
                                   +|..++.++.+++++.++++.|.+++++++||+|+ +|+++|+||..|++
T Consensus       131 -------------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~~~~~Giit~~dl~  179 (282)
T 2yzq_A          131 -------------YYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDS-EGNLVGIVDETDLL  179 (282)
T ss_dssp             -------------TSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECT-TSCEEEEEEGGGGG
T ss_pred             -------------HhCCCCEEECCCCCHHHHHHHHHHcCCcEEEEEcC-CCeEEEEEEHHHHh
Confidence                         77778999999999999999999999999999994 68999999999998

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.86  E-value=4.9e-21  Score=181.56  Aligned_cols=207  Identities=14%  Similarity=0.147  Sum_probs=152.6

Q ss_pred             CCC--CCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccc
Q 016866          154 PCP--RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  231 (381)
Q Consensus       154 ~~~--~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~  231 (381)
                      +|.  .+++++++++++.+|++.|.+++++++||+++  +.+   +++|+++.+|++.++......... .. ....+..
T Consensus        27 im~~~~~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d~--~~~---~~vGiv~~~Dl~~~~~~~~~~~~~-~~-~~~~~~~   99 (334)
T 2qrd_G           27 VLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDS--EAN---KFAGLLTMADFVNVIKYYYQSSSF-PE-AIAEIDK   99 (334)
T ss_dssp             GSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEET--TTT---EEEEEECHHHHHHHHHHHHHHCSC-GG-GGGGGGS
T ss_pred             hCCCCCCEEEEcCCCCHHHHHHHHHHcCCeEEEEEeC--CCC---eEEEEEEHHHHHHHHHHHhhccCC-cc-HHHHHhh
Confidence            564  35789999999999999999999999999975  236   899999999999987543211000 00 0001112


Q ss_pred             ccccccccccccccCCCc--eEecCCCCHHHHHHHHHhCCCcEEEEEcCCC-c----EEEEEeHHHHHHHHhhhhhcccc
Q 016866          232 IQLGTWVPRIGEANGRPF--AMLRPTASLGSALALLVQADVSSIPIVDDND-S----LLDIYSRSDITALAKDKAYAQIH  304 (381)
Q Consensus       232 l~ig~~~~~v~~~~~~~~--~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g-~----lvGiis~~Di~~l~~~~~~~~~~  304 (381)
                      .++..+....+++|..++  +++.+++++.++++.|.+++++++||+|++| +    ++|++|.+|+++....+... ..
T Consensus       100 ~~~~~i~~~l~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Givt~~dl~~~~~~~~~~-~~  178 (334)
T 2qrd_G          100 FRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCKE-TA  178 (334)
T ss_dssp             CBHHHHHHHHHHHTCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTTTEEEEEEEEEHHHHHHHHHHHCGG-GG
T ss_pred             hchhhHHHHHHhhccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCcCccceEEEeeHHHHHHHHHhhccc-hh
Confidence            222222222234455666  8999999999999999999999999999765 4    99999999999866532211 11


Q ss_pred             cccccHHHHHhcCCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 016866          305 LDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  379 (381)
Q Consensus       305 ~~~~~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~  379 (381)
                      +...++.+..          .+|..++.++.+++++.+|++.|.+++++++||+|+ +|+++|+||..|+++++.
T Consensus       179 ~~~~~v~~l~----------~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~-~~~~~Giit~~dl~~~~~  242 (334)
T 2qrd_G          179 MLRVPLNQMT----------IGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNS-EGTLLNVYESVDVMHLIQ  242 (334)
T ss_dssp             GCCCBGGGSS----------CSBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEETHHHHHHHT
T ss_pred             hhhCcHHHhC----------CcccCCceEECCCCcHHHHHHHHHHcCCcEEEEEcC-CCcEEEEEEHHHHHHHhh
Confidence            1123443310          037778999999999999999999999999999994 689999999999999875

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.84  E-value=4.1e-21  Score=164.54  Aligned_cols=137  Identities=16%  Similarity=0.273  Sum_probs=105.3

Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcc-ccc--ccccH---HHH
Q 016866          240 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQ-IHL--DEMNI---HQA  313 (381)
Q Consensus       240 ~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~-~~~--~~~~v---~~~  313 (381)
                      .++++|.++++++.+++++.+|++.|.+++++++||+|++|+++|++|.+|+++......... ..+  .....   ...
T Consensus        19 ~V~diM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dll~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (170)
T 4esy_A           19 PIRDILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHLVGIITESDFLRGSIPFWIYEASEILSRAIPAPEVEHL   98 (170)
T ss_dssp             BGGGGCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECTTSCEEEEEEGGGGGGGTCCTTHHHHHHHHTTTSCHHHHHHH
T ss_pred             CHHHhcCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCCccEEEEEEHHHHHHHHhhccccchhhhhhhccchhhHHhh
Confidence            456779999999999999999999999999999999999999999999999987433111000 000  00000   000


Q ss_pred             HhcCCCCCCCcc-cCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866          314 LQLGQDANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  380 (381)
Q Consensus       314 l~~~~~~~~~~~-~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~  380 (381)
                      ...  ....+.+ +|++++++|++++++.+|++.|.+++++++||+|  +|+++|+||.+||+++|+.
T Consensus        99 ~~~--~~~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd--~g~lvGivt~~Dil~~l~~  162 (170)
T 4esy_A           99 FET--GRKLTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQ--DGVPVGIVTRRDLLKLLLL  162 (170)
T ss_dssp             HHH--HTTCBHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEE--TTEEEEEEEHHHHTTTSCC
T ss_pred             hcc--ccccchhhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEE--CCEEEEEEEHHHHHHHHHh
Confidence            000  0011222 8999999999999999999999999999999999  3899999999999999864

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.80  E-value=5.1e-19  Score=147.71  Aligned_cols=119  Identities=16%  Similarity=0.305  Sum_probs=106.0

Q ss_pred             ccccccCC--CceEecCCCCHHHHHHHHHhCCCcEEEEEcCC-CcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhc
Q 016866          240 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  316 (381)
Q Consensus       240 ~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~  316 (381)
                      +++++|.+  +++++.+++++.+|++.|.+++++++||+|++ |+++|++|.+|+++....+.       +.++.+    
T Consensus        24 ~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~-------~~~v~~----   92 (148)
T 3lv9_A           24 KIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKINEN-------KIELEE----   92 (148)
T ss_dssp             BGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHHHHHHS-------CCCGGG----
T ss_pred             CHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhcCC-------CccHHH----
Confidence            56777987  89999999999999999999999999999987 89999999999998654331       245555    


Q ss_pred             CCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866          317 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  380 (381)
Q Consensus       317 ~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~  380 (381)
                               +| +++.++++++++.+|++.|.+++++++||+| ++|+++|+||..||++++++
T Consensus        93 ---------~m-~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd-~~g~~~Giit~~dil~~l~~  145 (148)
T 3lv9_A           93 ---------IL-RDIIYISENLTIDKALERIRKEKLQLAIVVD-EYGGTSGVVTIEDILEEIVG  145 (148)
T ss_dssp             ---------TC-BCCEEEETTSBHHHHHHHHHHHTCSEEEEEC-TTSSEEEEEEHHHHHHHHHH
T ss_pred             ---------hc-CCCeEECCCCCHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEEHHHHHHHHhC
Confidence                     77 7899999999999999999999999999999 47999999999999999976

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.80  E-value=1.9e-19  Score=152.09  Aligned_cols=122  Identities=18%  Similarity=0.276  Sum_probs=100.9

Q ss_pred             ccccC--CCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCC
Q 016866          242 GEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  319 (381)
Q Consensus       242 ~~~~~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~  319 (381)
                      .++|.  .++.++.+++++.+|+++|.+++++++||+|++|+++|++|.+|+++...........+.+.++.+       
T Consensus        18 ~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~~lvGiit~~Di~~~~~~~~~~~~~~~~~~v~~-------   90 (156)
T 3k6e_A           18 ETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEHDLSQEIMADTDIVH-------   90 (156)
T ss_dssp             GGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC-CBEEEEEEHHHHHHHHHHHTCCHHHHTTSBGGG-------
T ss_pred             HHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEecchhhhhhhcccccccccccCHHH-------
Confidence            34464  478999999999999999999999999999999999999999999986654332222222344444       


Q ss_pred             CCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 016866          320 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  379 (381)
Q Consensus       320 ~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~  379 (381)
                            +|.+++.++++++++.+|++.|.++++  +|||| ++|+++|+||.+||++++.
T Consensus        91 ------im~~~~~~v~~~~~l~~~~~~m~~~~~--lpVVd-~~g~l~GiiT~~Dil~~~~  141 (156)
T 3k6e_A           91 ------MTKTDVAVVSPDFTITEVLHKLVDESF--LPVVD-AEGIFQGIITRKSILKAVN  141 (156)
T ss_dssp             ------TCBCSCCCBCTTCCHHHHHHHTTTSSE--EEEEC-TTSBEEEEEEHHHHHHHHH
T ss_pred             ------hhcCCceecccccHHHHHHHHHHHcCC--eEEEe-cCCEEEEEEEHHHHHHHHH
Confidence                  888899999999999999999998764  99999 5799999999999999884

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.79  E-value=5.7e-19  Score=144.14  Aligned_cols=120  Identities=15%  Similarity=0.281  Sum_probs=104.8

Q ss_pred             ccccccC--CCceEecCCCCHHHHHHHHHhCCCcEEEEEcCC-CcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhc
Q 016866          240 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  316 (381)
Q Consensus       240 ~v~~~~~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~  316 (381)
                      +++++|.  .+++++.+++++.+|++.|.+++++++||+|++ |+++|++|.+|+++....+.      .+.++.+    
T Consensus         7 ~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~~------~~~~v~~----   76 (130)
T 3i8n_A            7 PVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQSGS------GQKQLGA----   76 (130)
T ss_dssp             CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHTTT------TTSBHHH----
T ss_pred             CHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhcCC------CcCCHHH----
Confidence            4667788  456789999999999999999999999999987 89999999999998765332      1356766    


Q ss_pred             CCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866          317 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  380 (381)
Q Consensus       317 ~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~  380 (381)
                               +| +++.++.+++++.+|++.|.+++++++||+| ++|+++|+||..||++++++
T Consensus        77 ---------~m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd-~~g~~vGivt~~dil~~l~g  129 (130)
T 3i8n_A           77 ---------VM-RPIQVVLNNTALPKVFDQMMTHRLQLALVVD-EYGTVLGLVTLEDIFEHLVG  129 (130)
T ss_dssp             ---------HS-EECCEEETTSCHHHHHHHHHHHTCCEEEEEC-TTSCEEEEEEHHHHHHHHHT
T ss_pred             ---------Hh-cCCcCcCCCCcHHHHHHHHHHcCCeEEEEEc-CCCCEEEEEEHHHHHHHHcC
Confidence                     56 4688999999999999999999999999999 47999999999999999986

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.78  E-value=3.6e-19  Score=144.74  Aligned_cols=120  Identities=13%  Similarity=0.369  Sum_probs=102.3

Q ss_pred             ccccccCCC--ceEecCCCCHHHHHHHHHhCCCcEEEEEcCC-CcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhc
Q 016866          240 RIGEANGRP--FAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  316 (381)
Q Consensus       240 ~v~~~~~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~  316 (381)
                      +++++|.++  ++++.+++++.+|++.|.+++++++||+|++ |+++|++|.+|+++......      .+.++.+    
T Consensus         4 ~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~------~~~~v~~----   73 (127)
T 3nqr_A            4 RVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDA------EAFSMDK----   73 (127)
T ss_dssp             BHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGSTTC------CCCCHHH----
T ss_pred             CHHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhccC------CCCCHHH----
Confidence            456778854  8999999999999999999999999999987 89999999999988554221      1356766    


Q ss_pred             CCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866          317 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  380 (381)
Q Consensus       317 ~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~  380 (381)
                               +|. ++.++.+++++.+|++.|.+++++++||+| ++|+++|+||.+||++++++
T Consensus        74 ---------~m~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~~~Giit~~dll~~l~g  126 (127)
T 3nqr_A           74 ---------VLR-TAVVVPESKRVDRMLKEFRSQRYHMAIVID-EFGGVSGLVTIEDILELIVG  126 (127)
T ss_dssp             ---------HCB-CCCEEETTCBHHHHHHHHHHTTCCEEEEEC-TTSCEEEEEEHHHHHHHC--
T ss_pred             ---------HcC-CCeEECCCCcHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEEHHHHHHHHhC
Confidence                     553 477999999999999999999999999999 47999999999999999876

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.78  E-value=1e-18  Score=140.65  Aligned_cols=119  Identities=19%  Similarity=0.372  Sum_probs=105.4

Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCC
Q 016866          240 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  319 (381)
Q Consensus       240 ~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~  319 (381)
                      +++++|.+++.++.+++++.+|++.|.+++.+++||+|++|+++|+++.+|+.+....+        ..++.+       
T Consensus         2 ~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~~--------~~~v~~-------   66 (122)
T 3kpb_A            2 LVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQN--------KKTIEE-------   66 (122)
T ss_dssp             BHHHHCCSCCCCEETTSBHHHHHHHHHHHTCSCEEEECTTSBEEEEECHHHHHHHHHTT--------CCBGGG-------
T ss_pred             chHHhhCCCCEEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHHHHHHhc--------ccCHHH-------
Confidence            45677999999999999999999999999999999999999999999999999866532        124554       


Q ss_pred             CCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866          320 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  380 (381)
Q Consensus       320 ~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~  380 (381)
                            +|.+++.++.+++++.++++.|.+++.+++||+| ++|+++|+||..||++++.+
T Consensus        67 ------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd-~~g~~~Givt~~dl~~~l~~  120 (122)
T 3kpb_A           67 ------IMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVD-DYRRVVGIVTSEDISRLFGG  120 (122)
T ss_dssp             ------TSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEEC-TTCBEEEEEEHHHHHHHHC-
T ss_pred             ------HhcCCCeEECCCCCHHHHHHHHHHhCCCeEEEEC-CCCCEEEEEeHHHHHHHhhc
Confidence                  6777889999999999999999999999999999 47999999999999999864

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.78  E-value=9.8e-19  Score=142.89  Aligned_cols=122  Identities=11%  Similarity=0.190  Sum_probs=103.6

Q ss_pred             ccccccC--CCceEecCCCCHHHHHHHHHhCCCcEEEEEcC-CCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhc
Q 016866          240 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDD-NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  316 (381)
Q Consensus       240 ~v~~~~~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~  316 (381)
                      +++++|.  .+++++.+++++.+|++.|.+++++++||+++ +|+++|++|.+|+++....+..    +...++.+    
T Consensus         3 ~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~~~----~~~~~v~~----   74 (130)
T 3hf7_A            3 SVNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKE----FTKEIMLR----   74 (130)
T ss_dssp             BHHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSSSC----CCHHHHHH----
T ss_pred             CHHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhccCc----cchhhHHH----
Confidence            4566785  46889999999999999999999999999975 6899999999999987654321    11234555    


Q ss_pred             CCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866          317 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  380 (381)
Q Consensus       317 ~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~  380 (381)
                               +| +++.++.+++++.+|++.|.+++++++||+| ++|+++|+||..||++++++
T Consensus        75 ---------~m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd-~~g~lvGiit~~Dil~~l~g  127 (130)
T 3hf7_A           75 ---------AA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVD-EYGDIQGLVTVEDILEEIVG  127 (130)
T ss_dssp             ---------HS-BCCCEEETTCBHHHHHHHHHHHCCCEEEEEC-TTSCEEEEEEHHHHHHHHHC
T ss_pred             ---------hc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEc-CCCCEEEEeeHHHHHHHHhC
Confidence                     55 4688999999999999999999999999999 47999999999999999986

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.78  E-value=2.4e-18  Score=147.58  Aligned_cols=119  Identities=18%  Similarity=0.329  Sum_probs=105.9

Q ss_pred             ccccccC--CCceEecCCCCHHHHHHHHHhCCCcEEEEEcCC-CcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhc
Q 016866          240 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  316 (381)
Q Consensus       240 ~v~~~~~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~  316 (381)
                      +++++|.  .+++++.+++++.+|++.|.+++++++||+|++ |+++|++|.+|+++....+.       +.++.+    
T Consensus        43 ~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~-------~~~v~~----  111 (172)
T 3lhh_A           43 TISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESIAGE-------RLELVD----  111 (172)
T ss_dssp             CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHHHHHHTTC-------CCCGGG----
T ss_pred             CHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHHHHHhhcC-------cccHHH----
Confidence            5677788  678999999999999999999999999999987 99999999999998665331       245555    


Q ss_pred             CCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866          317 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  380 (381)
Q Consensus       317 ~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~  380 (381)
                               +| ++++++.+++++.+|++.|.+++++++||+| ++|+++|+||..||++++++
T Consensus       112 ---------im-~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~g~lvGiit~~Dil~~l~~  164 (172)
T 3lhh_A          112 ---------LV-KNCNFVPNSLSGMELLEHFRTTGSQMVFVVD-EYGDLKGLVTLQDMMDALTG  164 (172)
T ss_dssp             ---------GC-BCCEEEETTCCHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHHHHHT
T ss_pred             ---------Hh-cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEe-CCCCEEEEeeHHHHHHHHhC
Confidence                     77 7899999999999999999999999999999 47999999999999999875

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.77  E-value=2e-18  Score=142.86  Aligned_cols=124  Identities=17%  Similarity=0.204  Sum_probs=105.3

Q ss_pred             ccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCC--cEEEEEeHHHHHHHHhhhhhcccccccccHHHH
Q 016866          236 TWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDND--SLLDIYSRSDITALAKDKAYAQIHLDEMNIHQA  313 (381)
Q Consensus       236 ~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g--~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~  313 (381)
                      .+..+++++|.+++.++.+++++.+|++.|.+++++++||+|++|  +++|++|.+|+++....+..     .+.++.+ 
T Consensus         2 ~~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~Givt~~dl~~~~~~~~~-----~~~~v~~-   75 (141)
T 2rih_A            2 AMAIRTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLD-----LDGPAMP-   75 (141)
T ss_dssp             ---CBGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCC-----TTSBSGG-
T ss_pred             CcceEHHHHhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCcceeEEEEEHHHHHHHHhcCCC-----CCCCHHH-
Confidence            344567888999999999999999999999999999999999888  99999999999986553211     0234444 


Q ss_pred             HhcCCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 016866          314 LQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  379 (381)
Q Consensus       314 l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~  379 (381)
                                  +|..++.++.++ ++.+|++.|.+++++++||+| ++|+++|+||.+||++++.
T Consensus        76 ------------~m~~~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd-~~g~~~Giit~~dll~~~~  127 (141)
T 2rih_A           76 ------------IANSPITVLDTD-PVHVAAEKMRRHNIRHVVVVN-KNGELVGVLSIRDLCFERA  127 (141)
T ss_dssp             ------------GCBCCCEEETTS-BHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHSCHH
T ss_pred             ------------HcCCCCeEEcCC-CHHHHHHHHHHcCCeEEEEEc-CCCcEEEEEEHHHHHHHHH
Confidence                        777789999999 999999999999999999999 4799999999999987654

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.77  E-value=9.9e-19  Score=142.59  Aligned_cols=118  Identities=14%  Similarity=0.325  Sum_probs=101.8

Q ss_pred             ccccccC--CCceEecCCCCHHHHHHHHHhCCCcEEEEEcCC-CcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhc
Q 016866          240 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  316 (381)
Q Consensus       240 ~v~~~~~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~  316 (381)
                      +++++|.  .+++++.+++++.+|++.|.+++++++||+|++ |+++|++|.+|+++.....        +.++.+    
T Consensus         6 ~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~--------~~~v~~----   73 (129)
T 3jtf_A            6 TVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYMLEP--------ALDIRS----   73 (129)
T ss_dssp             BHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGTCT--------TSCGGG----
T ss_pred             CHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhccC--------CcCHHH----
Confidence            5667787  678899999999999999999999999999985 8999999999998754321        244554    


Q ss_pred             CCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866          317 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  380 (381)
Q Consensus       317 ~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~  380 (381)
                               +|. ++.++.+++++.+|++.|.+++.+++||+| ++|+++|+||.+||++++++
T Consensus        74 ---------~m~-~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd-~~g~~~Giit~~Dil~~l~g  126 (129)
T 3jtf_A           74 ---------LVR-PAVFIPEVKRLNVLLREFRASRNHLAIVID-EHGGISGLVTMEDVLEQIVG  126 (129)
T ss_dssp             ---------GCB-CCCEEETTCBHHHHHHHHHTSSCCEEEEEC-C-CCEEEEEEHHHHHHHHHH
T ss_pred             ---------HhC-CCeEeCCCCcHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEEHHHHHHHHhC
Confidence                     553 578999999999999999999999999999 47999999999999999975

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.77  E-value=5.4e-18  Score=136.89  Aligned_cols=121  Identities=19%  Similarity=0.243  Sum_probs=105.2

Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCC
Q 016866          240 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  319 (381)
Q Consensus       240 ~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~  319 (381)
                      +++++|.+++.++.+++++.+|++.|.+++.+++||+| +|+++|+++.+|+.+....+..    ..+.++.+       
T Consensus         2 ~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~G~it~~dl~~~~~~~~~----~~~~~v~~-------   69 (125)
T 1pbj_A            2 RVEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAIAEGDD----LAEVKVWE-------   69 (125)
T ss_dssp             CHHHHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTEEEEEEEHHHHHHHHHHTCC----TTTSBHHH-------
T ss_pred             CHHHhcCCCceEECCCCcHHHHHHHHHHcCCCEEEEEe-CCeeEEEEeHHHHHHHHhcCCc----ccccCHHH-------
Confidence            35677888999999999999999999999999999999 8999999999999986553321    11356766       


Q ss_pred             CCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866          320 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  380 (381)
Q Consensus       320 ~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~  380 (381)
                            +|.+++.++.+++++.++++.|.+++++++||+| + |+++|+||.+|+++++.+
T Consensus        70 ------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd-~-~~~~Gvit~~dl~~~l~~  122 (125)
T 1pbj_A           70 ------VMERDLVTISPRATIKEAAEKMVKNVVWRLLVEE-D-DEIIGVISATDILRAKMA  122 (125)
T ss_dssp             ------HCBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHHC-
T ss_pred             ------HcCCCCeEECCCCCHHHHHHHHHhcCCcEEEEEE-C-CEEEEEEEHHHHHHHHHh
Confidence                  6667899999999999999999999999999999 4 899999999999998864

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.76  E-value=8.1e-19  Score=144.50  Aligned_cols=121  Identities=14%  Similarity=0.289  Sum_probs=101.9

Q ss_pred             ccccccC--CCceEecCCCCHHHHHHHHHhCCCcEEEEEcCC-CcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhc
Q 016866          240 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  316 (381)
Q Consensus       240 ~v~~~~~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~  316 (381)
                      +++++|.  .++.++.+++++.+|++.|.+++++++||+|++ |+++|++|.+|+++....+..     .+.++.+    
T Consensus         4 ~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~~-----~~~~v~~----   74 (136)
T 3lfr_A            4 QVRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILKADG-----DSDDVKK----   74 (136)
T ss_dssp             BHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGGSSSG-----GGCCGGG----
T ss_pred             ChHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHhccC-----CCcCHHH----
Confidence            4566787  568999999999999999999999999999987 899999999999986542111     1244554    


Q ss_pred             CCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866          317 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  380 (381)
Q Consensus       317 ~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~  380 (381)
                               +|. ++.++.+++++.+|++.|.+++++++||+| ++|+++|+||.+||++++++
T Consensus        75 ---------~m~-~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd-~~g~lvGiit~~Dil~~l~~  127 (136)
T 3lfr_A           75 ---------LLR-PATFVPESKRLNVLLREFRANHNHMAIVID-EYGGVAGLVTIEDVLEQIVG  127 (136)
T ss_dssp             ---------TCB-CCCEEETTCBHHHHHHHHHHHTCCEEEEEC-TTSCEEEEEEHHHHHTTC--
T ss_pred             ---------HcC-CCeEECCCCcHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEEHHHHHHHHhC
Confidence                     674 488999999999999999999999999999 47999999999999998875

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.76  E-value=2.5e-18  Score=144.48  Aligned_cols=119  Identities=18%  Similarity=0.289  Sum_probs=104.5

Q ss_pred             ccccccCC--CceEecCCCCHHHHHHHHHhCCCcEEEEE-cC-CCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHh
Q 016866          240 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIV-DD-NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQ  315 (381)
Q Consensus       240 ~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVv-d~-~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~  315 (381)
                      +++++|.+  +++++.+++++.+|++.|.+++++++||+ |+ +|+++|++|.+|+++....+.       +.++.+   
T Consensus        21 ~v~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~~~~-------~~~v~~---   90 (153)
T 3oco_A           21 VASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQARIDD-------KAKIST---   90 (153)
T ss_dssp             BHHHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHHHHT-------TSBGGG---
T ss_pred             EeeeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHhcCC-------CCcHHH---
Confidence            45667875  78999999999999999999999999999 65 489999999999998655331       245555   


Q ss_pred             cCCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866          316 LGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  380 (381)
Q Consensus       316 ~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~  380 (381)
                                +| +++.++.+++++.+|++.|.+++++++||+| ++|+++|+||..||++++++
T Consensus        91 ----------~m-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~~g~~vGivt~~dil~~l~~  143 (153)
T 3oco_A           91 ----------IM-RDIVSVPENMKVPDVMEEMSAHRVPMAIVID-EYGGTSGIITDKDVYEELFG  143 (153)
T ss_dssp             ----------TC-BCCEEEETTSBHHHHHHHHHHTTCSCEEEEC-TTSCEEEEECHHHHHHHHHC
T ss_pred             ----------Hh-CCCeEECCCCCHHHHHHHHHHcCCcEEEEEe-CCCCEEEEeeHHHHHHHHhc
Confidence                      77 7899999999999999999999999999999 47999999999999999875

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.76  E-value=9e-18  Score=138.10  Aligned_cols=122  Identities=19%  Similarity=0.357  Sum_probs=105.6

Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHH-HHHHhhhhhcccccccccHHHHHhcCC
Q 016866          240 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI-TALAKDKAYAQIHLDEMNIHQALQLGQ  318 (381)
Q Consensus       240 ~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di-~~l~~~~~~~~~~~~~~~v~~~l~~~~  318 (381)
                      +++++|.+++.++.+++++.+|++.|.+++.+++||+|++|+++|+++.+|+ .+....+..     .+.++.+      
T Consensus         9 ~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~-----~~~~v~~------   77 (138)
T 2p9m_A            9 KVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRDKYT-----LETTIGD------   77 (138)
T ss_dssp             BGGGTSBCSCCCEETTSBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHHHHHTTTCCC-----SSCBHHH------
T ss_pred             CHHHhhcCCceEECCCCcHHHHHHHHHHCCCcEEEEECCCCeEEEEEEHHHHHHHHHhhccc-----CCcCHHH------
Confidence            5667798899999999999999999999999999999988999999999999 876543221     1356666      


Q ss_pred             CCCCCcccCCCcceEEcCCCCHHHHHHHHHhCC-----CCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866          319 DANPSLGFNGQRCQMCLRSDPLHKVMERLANPG-----VRRLVIVEAGSKRVEGIISLSDVFRFLLG  380 (381)
Q Consensus       319 ~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~-----~~~l~Vvd~~~~~liGiIs~~DIl~~l~~  380 (381)
                             +|.+++.++.+++++.++++.|.+++     ++++||+|+ +|+++|+||..|+++++..
T Consensus        78 -------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~-~g~~~Giit~~dll~~~~~  136 (138)
T 2p9m_A           78 -------VMTKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDK-NNKLVGIISDGDIIRTISK  136 (138)
T ss_dssp             -------HSCSSCCCEETTSBHHHHHHHHTCC-----CCCEEEEECT-TSBEEEEEEHHHHHHHHHH
T ss_pred             -------HhCCCcEEECCCCCHHHHHHHHHhcCCccccccEEEEECC-CCeEEEEEEHHHHHHHHHh
Confidence                   67778899999999999999999999     999999994 7999999999999998854

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.76  E-value=1.8e-18  Score=140.78  Aligned_cols=121  Identities=13%  Similarity=0.166  Sum_probs=104.8

Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCC
Q 016866          240 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  319 (381)
Q Consensus       240 ~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~  319 (381)
                      +++++|.+++.++.+++++.+|++.|.+++++++||+|+ |+++|++|.+|+.+...++...     +.++.+       
T Consensus         6 ~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~Givt~~dl~~~~~~~~~~-----~~~v~~-------   72 (128)
T 3gby_A            6 TFSYLAETDYPVFTLGGSTADAARRLAASGCACAPVLDG-ERYLGMVHLSRLLEGRKGWPTV-----KEKLGE-------   72 (128)
T ss_dssp             BGGGGCBCCSCCEETTSBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHTTCSSSCCT-----TCBCCG-------
T ss_pred             EHHHhhcCCcceECCCCCHHHHHHHHHHCCCcEEEEEEC-CEEEEEEEHHHHHHHHhhCCcc-----cCcHHH-------
Confidence            567789999999999999999999999999999999998 9999999999999754422110     123333       


Q ss_pred             CCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866          320 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  380 (381)
Q Consensus       320 ~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~  380 (381)
                            +|.+++.++.+++++.++++.|.+++.+++||+| ++|+++|+||..|+++++..
T Consensus        73 ------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd-~~g~~~Giit~~dll~~l~~  126 (128)
T 3gby_A           73 ------ELLETVRSYRPGEQLFDNLISVAAAKCSVVPLAD-EDGRYEGVVSRKRILGFLAE  126 (128)
T ss_dssp             ------GGCBCCCCBCTTSBGGGSHHHHHHCSSSEEEEEC-TTCBEEEEEEHHHHHHHHHT
T ss_pred             ------HccCCCcEECCCCCHHHHHHHHHhCCCcEEEEEC-CCCCEEEEEEHHHHHHHHHh
Confidence                  7777899999999999999999999999999999 47999999999999999864

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.76  E-value=3.9e-18  Score=142.40  Aligned_cols=127  Identities=22%  Similarity=0.350  Sum_probs=103.9

Q ss_pred             ccccccCC--CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcc---------cccccc
Q 016866          240 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQ---------IHLDEM  308 (381)
Q Consensus       240 ~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~---------~~~~~~  308 (381)
                      +++++|.+  +++++.+++++.+|++.|.+++++++||+|++|+++|++|.+|++.+........         ....+.
T Consensus         6 ~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (152)
T 4gqw_A            6 TVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLALDSGDSTWKTFNAVQKLLSKTNGK   85 (152)
T ss_dssp             BGGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHTTCC----CCHHHHHHHTC-----CC
T ss_pred             EhhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCCCeEEEEEEHHHHHHhhcccCcccchHHHHHHHHHhccc
Confidence            56777887  8999999999999999999999999999999899999999999986432110000         000123


Q ss_pred             cHHHHHhcCCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866          309 NIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  380 (381)
Q Consensus       309 ~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~  380 (381)
                      ++.+             +|..+++++.+++++.+|++.|.+++++++||+| ++|+++|+||.+||++++..
T Consensus        86 ~v~~-------------~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd-~~g~~~Giit~~dil~~~~~  143 (152)
T 4gqw_A           86 LVGD-------------LMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVD-SDGKLVGIITRGNVVRAALQ  143 (152)
T ss_dssp             BHHH-------------HSEESCCCEESSSBHHHHHHHHHHSSCCEEEEEC-TTSBEEEEEEHHHHHHHHHC
T ss_pred             cHHH-------------hcCCCceEECCCCcHHHHHHHHHHCCCCEEEEEC-CCCcEEEEEEHHHHHHHHHh
Confidence            4444             6777888999999999999999999999999999 47999999999999999865

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.76  E-value=7.4e-18  Score=137.77  Aligned_cols=120  Identities=18%  Similarity=0.258  Sum_probs=104.9

Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCC
Q 016866          240 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  319 (381)
Q Consensus       240 ~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~  319 (381)
                      +++++|.+++.++.+++++.+|++.|.+++++++||+| +|+++|+++.+|+.++...+..     .+.++.+       
T Consensus         5 ~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~~~~~-----~~~~v~~-------   71 (133)
T 2ef7_A            5 IVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGIITERDIVKAIGKGKS-----LETKAEE-------   71 (133)
T ss_dssp             BGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTTCC-----TTCBGGG-------
T ss_pred             cHHHhccCCCEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEcHHHHHHHHhcCCC-----cccCHHH-------
Confidence            56777988999999999999999999999999999999 8999999999999886653311     1244554       


Q ss_pred             CCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 016866          320 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  379 (381)
Q Consensus       320 ~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~  379 (381)
                            +|.+++.++.+++++.++++.|.+++.+++||+| ++|+++|+||..||++++.
T Consensus        72 ------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd-~~g~~~Giit~~dll~~~~  124 (133)
T 2ef7_A           72 ------FMTASLITIREDSPITGALALMRQFNIRHLPVVD-DKGNLKGIISIRDITRAID  124 (133)
T ss_dssp             ------TSEECCCCEETTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHHHHH
T ss_pred             ------HcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEC-CCCeEEEEEEHHHHHHHHH
Confidence                  6777889999999999999999999999999999 4799999999999999875

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.76  E-value=1e-17  Score=137.84  Aligned_cols=121  Identities=18%  Similarity=0.359  Sum_probs=104.6

Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH-HHhhhhhcccccccccHHHHHhcCC
Q 016866          240 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA-LAKDKAYAQIHLDEMNIHQALQLGQ  318 (381)
Q Consensus       240 ~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~-l~~~~~~~~~~~~~~~v~~~l~~~~  318 (381)
                      +++++|.+++.++.+++++.+|++.|.+++++++||+|++|+++|++|.+|+++ +...+.     ..+.++.+      
T Consensus         8 ~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~-----~~~~~v~~------   76 (138)
T 2yzi_A            8 PIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGL-----PYDIPVER------   76 (138)
T ss_dssp             BGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCC-----CTTSBGGG------
T ss_pred             hHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhcCC-----cccCCHHH------
Confidence            566779889999999999999999999999999999998899999999999974 433221     11245554      


Q ss_pred             CCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866          319 DANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  380 (381)
Q Consensus       319 ~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~  380 (381)
                             +|..++.++.+++++.+|++.|.+++++++ |+|+ +|+++|+||..||++++.+
T Consensus        77 -------~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~-~g~~~Giit~~dil~~~~~  129 (138)
T 2yzi_A           77 -------IMTRNLITANVNTPLGEVLRKMAEHRIKHI-LIEE-EGKIVGIFTLSDLLEASRR  129 (138)
T ss_dssp             -------TCBCSCCEEETTSBHHHHHHHHHHHTCSEE-EEEE-TTEEEEEEEHHHHHHHHHC
T ss_pred             -------HhhCCCeEECCCCcHHHHHHHHHhcCCCEE-EECC-CCCEEEEEEHHHHHHHHHH
Confidence                   777789999999999999999999999999 9994 6999999999999998864

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.75  E-value=9.6e-18  Score=141.98  Aligned_cols=125  Identities=22%  Similarity=0.228  Sum_probs=105.2

Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcc----cccccccHHHHHh
Q 016866          240 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQ----IHLDEMNIHQALQ  315 (381)
Q Consensus       240 ~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~----~~~~~~~v~~~l~  315 (381)
                      +++++|.++++++.+++++.+|+++|.+++++++||+|++|+++|++|.+|+++.........    ....+.++.+   
T Consensus         6 ~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~~~~v~~---   82 (160)
T 2o16_A            6 KVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPLFE---   82 (160)
T ss_dssp             BGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC---------CCCBHHH---
T ss_pred             cHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHHhhcccccccchhcccCHHH---
Confidence            566779889999999999999999999999999999998899999999999998654321100    0011345555   


Q ss_pred             cCCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 016866          316 LGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  379 (381)
Q Consensus       316 ~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~  379 (381)
                                +|..++.++.+++++.+|++.|.+++++++||+| + |+++|+||..||++++.
T Consensus        83 ----------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~-g~lvGiit~~dil~~~~  134 (160)
T 2o16_A           83 ----------VMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA-K-DVLVGIITDSDFVTIAI  134 (160)
T ss_dssp             ----------HSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEE-T-TEEEEEECHHHHHHHHH
T ss_pred             ----------HhcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEE-C-CEEEEEEEHHHHHHHHH
Confidence                      7777899999999999999999999999999999 4 89999999999999875

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.75  E-value=5.9e-18  Score=144.02  Aligned_cols=123  Identities=20%  Similarity=0.347  Sum_probs=106.3

Q ss_pred             ccccccCC---CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhc
Q 016866          240 RIGEANGR---PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  316 (381)
Q Consensus       240 ~v~~~~~~---~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~  316 (381)
                      +++++|.+   ++.++.+++++.+|++.|.+++++++||+|++|+++|++|.+|+++.+..+....   .+.++.+    
T Consensus        25 ~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~---~~~~v~~----   97 (165)
T 3fhm_A           25 FVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVAGQGAAS---LQQSVSV----   97 (165)
T ss_dssp             BHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHGGGG---GTSBGGG----
T ss_pred             CHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHHhcCCcc---ccCCHHH----
Confidence            56677874   7899999999999999999999999999999999999999999998665432111   1345555    


Q ss_pred             CCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866          317 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  380 (381)
Q Consensus       317 ~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~  380 (381)
                               +|..++.++.+++++.+|++.|.+++++++||+| + |+++|+||..||++++..
T Consensus        98 ---------~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~-g~~~Giit~~dil~~~~~  150 (165)
T 3fhm_A           98 ---------AMTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEE-N-GRLAGIISIGDVVKARIG  150 (165)
T ss_dssp             ---------TSBSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHTTC
T ss_pred             ---------HhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE-C-CEEEEEEEHHHHHHHHHH
Confidence                     7777899999999999999999999999999999 5 999999999999999864

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.75  E-value=1.1e-17  Score=141.44  Aligned_cols=122  Identities=17%  Similarity=0.358  Sum_probs=103.9

Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCC
Q 016866          240 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  319 (381)
Q Consensus       240 ~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~  319 (381)
                      +++++|.++ +++.+++++.+|++.|.+++++++||+|++|+++|++|.+|+++....+..    ..+.++.+       
T Consensus        18 ~v~~im~~~-~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~----~~~~~v~~-------   85 (159)
T 3fv6_A           18 QVKDFQSIP-VVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIGQQE----LTSVPVHI-------   85 (159)
T ss_dssp             BGGGSCBCC-CEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHTSCSC----TTTCBGGG-------
T ss_pred             CHHHHcCCC-EEECCCCcHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHhhccCc----ccCcCHHH-------
Confidence            456678874 599999999999999999999999999999999999999999986532211    11345555       


Q ss_pred             CCCCcccCCC--cceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCC---eEEEEEehHHHHHHhhc
Q 016866          320 ANPSLGFNGQ--RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSK---RVEGIISLSDVFRFLLG  380 (381)
Q Consensus       320 ~~~~~~~m~~--~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~---~liGiIs~~DIl~~l~~  380 (381)
                            +|..  ++.++.+++++.+|++.|.+++++++||+|+ +|   +++|+||..||++++..
T Consensus        86 ------~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~~~~~vGiit~~dil~~l~~  144 (159)
T 3fv6_A           86 ------IMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKD-TDKGFEVIGRVTKTNMTKILVS  144 (159)
T ss_dssp             ------TSEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEE-CSSSEEEEEEEEHHHHHHHHHH
T ss_pred             ------HHcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeC-CCcceeEEEEEEHHHHHHHHHH
Confidence                  6766  7899999999999999999999999999994 57   99999999999999864

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.75  E-value=1.2e-17  Score=138.23  Aligned_cols=126  Identities=26%  Similarity=0.503  Sum_probs=101.2

Q ss_pred             ccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCC
Q 016866          244 ANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPS  323 (381)
Q Consensus       244 ~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~  323 (381)
                      +|.+++.++.+++++.+|++.|.+++++++||+|++|+++|+++.+|+++....+.+.   ..+.++.+++.....   .
T Consensus        16 ~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~---~~~~~v~~~m~~~~~---~   89 (144)
T 2nyc_A           16 ITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYN---DLSLSVGEALMRRSD---D   89 (144)
T ss_dssp             CBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC-------CCSBHHHHHHHCC-----
T ss_pred             CCCCCceEECCCCcHHHHHHHHHHcCcceeeEEcCCCcEEEEEcHHHHHHHhcccccc---cCCccHHHHHhcCcc---c
Confidence            3667899999999999999999999999999999889999999999999866543221   114677775432100   0


Q ss_pred             cccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866          324 LGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  380 (381)
Q Consensus       324 ~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~  380 (381)
                        +  .++.++.+++++.+|++.|.+++++++||+| ++|+++|+||.+||++++..
T Consensus        90 --~--~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd-~~g~~~Giit~~dil~~l~~  141 (144)
T 2nyc_A           90 --F--EGVYTCTKNDKLSTIMDNIRKARVHRFFVVD-DVGRLVGVLTLSDILKYILL  141 (144)
T ss_dssp             --------CEECTTSBHHHHHHHHHHHTCSEEEEEC-TTSBEEEEEEHHHHHHHHHH
T ss_pred             --c--CCCeEECCCCcHHHHHHHHHHCCCCEEEEEC-CCCCEEEEEEHHHHHHHHHh
Confidence              0  1578999999999999999999999999999 47999999999999999864

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.75  E-value=9.6e-18  Score=140.15  Aligned_cols=118  Identities=12%  Similarity=0.250  Sum_probs=104.2

Q ss_pred             ccccccCC--CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcC
Q 016866          240 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLG  317 (381)
Q Consensus       240 ~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~  317 (381)
                      +++++|.+  +++++.+++++.+|++.|.+++++++||+|++|+++|++|.+|+.+....+..    +.+.++.+     
T Consensus        29 ~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~----~~~~~v~~-----   99 (149)
T 3k2v_A           29 RVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGDLRRVFDTGVD----MRDASIAD-----   99 (149)
T ss_dssp             BGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTCBEEEEEEHHHHHHHHCSSSC----CTTCBHHH-----
T ss_pred             CHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCCcEEEEecHHHHHHHHhcCCC----cccCcHHH-----
Confidence            67788998  89999999999999999999999999999999999999999999987654321    12467777     


Q ss_pred             CCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 016866          318 QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  376 (381)
Q Consensus       318 ~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~  376 (381)
                              +|..++.++.+++++.+|++.|.+++++++||+|+  ++++|+||..||++
T Consensus       100 --------~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~~~~Giit~~dil~  148 (149)
T 3k2v_A          100 --------VMTRGGIRIRPGTLAVDALNLMQSRHITCVLVADG--DHLLGVVHMHDLLR  148 (149)
T ss_dssp             --------HSEESCCEECTTCBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHTC
T ss_pred             --------HcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEecC--CEEEEEEEHHHhhc
Confidence                    66678899999999999999999999999999994  49999999999975

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.74  E-value=3.9e-18  Score=139.47  Aligned_cols=122  Identities=16%  Similarity=0.257  Sum_probs=104.2

Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH-HHhhhhhcccccccccHHHHHhcCC
Q 016866          240 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA-LAKDKAYAQIHLDEMNIHQALQLGQ  318 (381)
Q Consensus       240 ~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~-l~~~~~~~~~~~~~~~v~~~l~~~~  318 (381)
                      +++++|.+++.++.+++++.+|++.|.+++++++||+|++|+++|+++.+|+.. +...+..    ..+.++.+      
T Consensus         9 ~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~----~~~~~v~~------   78 (133)
T 1y5h_A            9 TARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLD----PNTATAGE------   78 (133)
T ss_dssp             CHHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTCC----TTTSBHHH------
T ss_pred             CHHHHhcCCceEeCCCCCHHHHHHHHHHhCCCeEEEECCCCeEEEEEeHHHHHHHHHhcCCC----ccccCHHH------
Confidence            456778888999999999999999999999999999998899999999999984 4442211    11356776      


Q ss_pred             CCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866          319 DANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  380 (381)
Q Consensus       319 ~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~  380 (381)
                             +|.+++.++.+++++.++++.|.+++.+++||+| + |+++|+||.+||++++.+
T Consensus        79 -------~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd-~-g~~~Giit~~dil~~l~~  131 (133)
T 1y5h_A           79 -------LARDSIYYVDANASIQEMLNVMEEHQVRRVPVIS-E-HRLVGIVTEADIARHLPE  131 (133)
T ss_dssp             -------HHTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHTCC-
T ss_pred             -------HhcCCCEEECCCCCHHHHHHHHHHcCCCEEEEEE-C-CEEEEEEEHHHHHHHHHh
Confidence                   5556789999999999999999999999999999 4 899999999999998864

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.74  E-value=8.5e-18  Score=140.42  Aligned_cols=125  Identities=21%  Similarity=0.213  Sum_probs=103.4

Q ss_pred             ccccccC--CCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhh-cccccccccHHHHHhc
Q 016866          240 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAY-AQIHLDEMNIHQALQL  316 (381)
Q Consensus       240 ~v~~~~~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~-~~~~~~~~~v~~~l~~  316 (381)
                      +++++|.  .+++++.+++++.+|++.|.+++++++||+|++|+++|++|.+|+++....... ........++.+    
T Consensus        16 ~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~v~~----   91 (150)
T 3lqn_A           16 FVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGILGLERIEFERLEEMKVEQ----   91 (150)
T ss_dssp             BHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHTBCSSSBCGGGGGGCBGGG----
T ss_pred             ChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCCCCEEEEEEHHHHHHHHHhhcccchhHHhcCCHHH----
Confidence            4566787  458999999999999999999999999999999999999999999987642211 000111234444    


Q ss_pred             CCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866          317 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  380 (381)
Q Consensus       317 ~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~  380 (381)
                               +|..++.++.+++++.+|++.|.++++  +||+| ++|+++|+||.+||++++..
T Consensus        92 ---------~m~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd-~~g~~~Giit~~dil~~l~~  143 (150)
T 3lqn_A           92 ---------VMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVN-EDGYFEGILTRRAILKLLNK  143 (150)
T ss_dssp             ---------TCBSSCCEEETTCBHHHHHHHHHHCSE--EEEEC-TTCBEEEEEEHHHHHHHHHH
T ss_pred             ---------HhcCCCceeCCCCCHHHHHHHHHhCCE--EEEEC-CCCcEEEEEEHHHHHHHHHH
Confidence                     777889999999999999999999997  99999 47999999999999998853

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.74  E-value=1.7e-17  Score=143.85  Aligned_cols=124  Identities=19%  Similarity=0.273  Sum_probs=106.3

Q ss_pred             cccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCC
Q 016866          239 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQ  318 (381)
Q Consensus       239 ~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~  318 (381)
                      .+++++|.++++++.+++++.+|+++|.+++++++||+|++|+++|+++.+|++.........   ..+.++.+      
T Consensus         9 ~~v~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~g~~vGivt~~dl~~~~~~~~~~---~~~~~v~~------   79 (184)
T 1pvm_A            9 MRVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKK---PDEVPIRL------   79 (184)
T ss_dssp             CBGGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCCC---GGGSBGGG------
T ss_pred             cCHHHhcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccC---cccCCHHH------
Confidence            467778999999999999999999999999999999999889999999999999865421110   01245554      


Q ss_pred             CCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 016866          319 DANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  379 (381)
Q Consensus       319 ~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~  379 (381)
                             +|..++.++.+++++.+|++.|.+++++++||+| ++|+++|+||..||++++.
T Consensus        80 -------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~~~Givt~~dll~~~~  132 (184)
T 1pvm_A           80 -------VMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVD-DPGRVVGIVTLTDLSRYLS  132 (184)
T ss_dssp             -------TSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEEC-TTCCEEEEEEHHHHTTTSC
T ss_pred             -------HhCCCCcEECCCCCHHHHHHHHHHcCCcEEEEEc-CCCeEEEEEEHHHHHHHHH
Confidence                   7777899999999999999999999999999999 4699999999999998764

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.73  E-value=6.4e-18  Score=145.37  Aligned_cols=138  Identities=22%  Similarity=0.372  Sum_probs=102.9

Q ss_pred             ccccccCC--CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhc--------c--ccccc
Q 016866          240 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYA--------Q--IHLDE  307 (381)
Q Consensus       240 ~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~--------~--~~~~~  307 (381)
                      +++++|.+  +++++.+++++.+|+++|.+++++++||+|++|+++|++|.+|++++.......        .  ..|..
T Consensus         5 ~v~dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (180)
T 3sl7_A            5 TVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTWKT   84 (180)
T ss_dssp             BHHHHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHTCC-------------------CCCS
T ss_pred             eHHHhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCCCeEEEEEEHHHHHhhhhhccccCCcccccccccchhhh
Confidence            45677887  789999999999999999999999999999999999999999998532100000        0  00000


Q ss_pred             c-cHHHHHhcCCCCCCCcc-cCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866          308 M-NIHQALQLGQDANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  380 (381)
Q Consensus       308 ~-~v~~~l~~~~~~~~~~~-~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~  380 (381)
                      . .....+.  .....+++ +|.+++.++.+++++.+|++.|.+++++++||+| ++|+++|+||.+||++++..
T Consensus        85 ~~~~~~~~~--~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~~vGiit~~dil~~~~~  156 (180)
T 3sl7_A           85 FNELQKLIS--KTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVD-ADGKLIGILTRGNVVRAALQ  156 (180)
T ss_dssp             HHHHHHHHH--TTTTCBHHHHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEEC-TTCBEEEEEEHHHHHHHHHH
T ss_pred             hHHHHHHHh--ccccccHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEEC-CCCeEEEEEEHHHHHHHHHH
Confidence            0 0000000  01111222 7877889999999999999999999999999999 47999999999999999863

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.73  E-value=2.4e-17  Score=135.13  Aligned_cols=121  Identities=12%  Similarity=0.243  Sum_probs=103.4

Q ss_pred             ccccccC---CCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH-HHhhhhhcccccccccHHHHHh
Q 016866          240 RIGEANG---RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA-LAKDKAYAQIHLDEMNIHQALQ  315 (381)
Q Consensus       240 ~v~~~~~---~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~-l~~~~~~~~~~~~~~~v~~~l~  315 (381)
                      +++++|.   +++.++.+++++.+|++.|.+++++++||+| +|+++|+++.+|+++ +...+..    ..+.++.+   
T Consensus         7 ~v~~im~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~~~~~~----~~~~~v~~---   78 (135)
T 2rc3_A            7 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK-DEKLVGILTERDFSRKSYLLDKP----VKDTQVKE---   78 (135)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHGGGSSSC----GGGSBGGG---
T ss_pred             eHHHHHhcCCCCcEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEehHHHHHHHHHcCCC----cccCCHHH---
Confidence            4566787   7899999999999999999999999999999 899999999999986 3332210    11345555   


Q ss_pred             cCCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866          316 LGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  380 (381)
Q Consensus       316 ~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~  380 (381)
                                +|.+++.++.+++++.+|++.|.+++++++||+| + |+++|+||.+||++++.+
T Consensus        79 ----------~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~-g~~~Giit~~dll~~~~~  131 (135)
T 2rc3_A           79 ----------IMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-D-GKVIGLLSIGDLVKDAIS  131 (135)
T ss_dssp             ----------TSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHHHC
T ss_pred             ----------hccCCCeEECCCCcHHHHHHHHHHhCCCEEEEEe-C-CEEEEEEEHHHHHHHHHh
Confidence                      7777899999999999999999999999999999 4 899999999999999864

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.73  E-value=3.8e-18  Score=145.98  Aligned_cols=155  Identities=16%  Similarity=0.231  Sum_probs=113.4

Q ss_pred             HHHHHHHHHhhhCcccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeecccCCCCcEEEEeehHHHHHHHHHhccCCC
Q 016866           41 LSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGS  120 (381)
Q Consensus        41 ~~~~~~~~~l~~~~~~d~~p~s~~vi~ld~~~~v~~A~~~l~~~~i~~~pV~d~~~~~~vGilt~~D~~~il~~~~~~~~  120 (381)
                      ..++.+...|++.++.|+|-  .++++++++.|+.+|++.|.+++++++||+|++ ++++|++|..|+++.+.....   
T Consensus         6 ~~~~~~~~~l~~~~V~diM~--~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~-g~lvGiit~~Dll~~~~~~~~---   79 (170)
T 4esy_A            6 ARRRAIARAIRQVPIRDILT--SPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQN-GHLVGIITESDFLRGSIPFWI---   79 (170)
T ss_dssp             HHHHHHHHHHHTSBGGGGCC--SCCCCEETTSBHHHHHHHHHHTTCSEEEEECTT-SCEEEEEEGGGGGGGTCCTTH---
T ss_pred             HHHHHHHHHHcCCCHHHhcC--CCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCC-ccEEEEEEHHHHHHHHhhccc---
Confidence            35677888999999999994  579999999999999999999999999999975 569999999999753311000   


Q ss_pred             CCChhHH-hh-ccHHHHHHHHHhhhccccCCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccce
Q 016866          121 NLTEEEL-ET-HTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEI  198 (381)
Q Consensus       121 ~~~~~~l-~~-~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~  198 (381)
                       ....+. .. ..............    ...++.+|.++++++.+++++.+|+++|.+++++++||+|+    |   ++
T Consensus        80 -~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd~----g---~l  147 (170)
T 4esy_A           80 -YEASEILSRAIPAPEVEHLFETGR----KLTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQD----G---VP  147 (170)
T ss_dssp             -HHHHHHHTTTSCHHHHHHHHHHHT----TCBHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEET----T---EE
T ss_pred             -cchhhhhhhccchhhHHhhhcccc----ccchhhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEEC----C---EE
Confidence             000000 00 00011111110000    00112368899999999999999999999999999999964    6   89


Q ss_pred             EEEeehhhHHHHHhh
Q 016866          199 LYLASLSDILKCICR  213 (381)
Q Consensus       199 ~gils~~dil~~l~~  213 (381)
                      +|++|.+||++++..
T Consensus       148 vGivt~~Dil~~l~~  162 (170)
T 4esy_A          148 VGIVTRRDLLKLLLL  162 (170)
T ss_dssp             EEEEEHHHHTTTSCC
T ss_pred             EEEEEHHHHHHHHHh
Confidence            999999999997754

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.73  E-value=4.8e-17  Score=147.42  Aligned_cols=198  Identities=11%  Similarity=0.078  Sum_probs=130.0

Q ss_pred             CCCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCC---CCc------
Q 016866          153 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSS---SLP------  223 (381)
Q Consensus       153 ~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~---~~~------  223 (381)
                      .+|.++++++.+++++.+|+++|.+++++++||+|+   +|   +++|++|..|+++++.........   ...      
T Consensus        11 ~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~---~~---~l~Giit~~di~~~~~~~~~~~~~~~~~~~~~~v~~   84 (245)
T 3l2b_A           11 DLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADG---NN---HLLGMLSTSNITATYMDIWDSNILAKSATSLDNILD   84 (245)
T ss_dssp             GSCCBCCCCBCTTCBHHHHHHHHHHTTCSEEEEECT---TC---BEEEEEEHHHHHHHHHCCCCTTHHHHTTCCHHHHHH
T ss_pred             HhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---EEEEEEEHHHHHHHHHHhhhhhhhhhccCCHHHHHH
Confidence            478899999999999999999999999999999976   57   899999999999988543211000   000      


Q ss_pred             -----------cccCcccccccccc-ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCC-----------
Q 016866          224 -----------ILQQPVSSIQLGTW-VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDND-----------  280 (381)
Q Consensus       224 -----------~~~~~i~~l~ig~~-~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g-----------  280 (381)
                                 ......+.+.++.. ...+.+.+....+.+-.+.  .++...+.+.+++++++++...           
T Consensus        85 ~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~~~ivIvgdr--~~~~~~~i~~~~~~liit~~~~~~~~v~~~a~~  162 (245)
T 3l2b_A           85 TLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAGDR--AEIQAELIELKVSLLIVTGGHTPSKEIIELAKK  162 (245)
T ss_dssp             HTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCTTCEEEECSC--HHHHHHHHHTTCSEEEECTTCCCCHHHHHHHHH
T ss_pred             HhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCCCCEEEECCC--HHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHH
Confidence                       00000111111111 1122333444444444443  8889999999999999986321           


Q ss_pred             -cEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccCC-CcceEEcCCCCHHHHHHHHHhCCCCEEEEE
Q 016866          281 -SLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNG-QRCQMCLRSDPLHKVMERLANPGVRRLVIV  358 (381)
Q Consensus       281 -~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m~-~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vv  358 (381)
                       .+-.+.+..|.......-.      ...++++             +|+ +++.++++++++.+|++.|.+++++++||+
T Consensus       163 ~~~~~i~t~~d~~~~~~~~~------~~~~v~~-------------im~~~~~~~~~~~~~~~~~~~~m~~~~~~~~pVv  223 (245)
T 3l2b_A          163 NNITVITTPHDSFTASRLIV------QSLPVDY-------------VMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVI  223 (245)
T ss_dssp             HTCEEEECSSCHHHHHHHGG------GGSBHHH-------------HSBCTTCCCEETTSBHHHHHHHHHHHCCSEEEEE
T ss_pred             cCCeEEEeCCChHHHHHHHh------cCCceee-------------EecCCccEEECCCCcHHHHHHHHHhcCCceEEEE
Confidence             1223333333332211000      0234555             787 789999999999999999999999999999


Q ss_pred             eCCCCeEEEEEehHHHHHHh
Q 016866          359 EAGSKRVEGIISLSDVFRFL  378 (381)
Q Consensus       359 d~~~~~liGiIs~~DIl~~l  378 (381)
                      |+ +|+++|+||.+|++++.
T Consensus       224 d~-~~~~~Giit~~dll~~~  242 (245)
T 3l2b_A          224 DE-NNKVVGSIARFHLISTH  242 (245)
T ss_dssp             CT-TCBEEEEEECC------
T ss_pred             cC-CCeEEEEEEHHHhhchh
Confidence            94 79999999999999864

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.73  E-value=3.4e-17  Score=138.58  Aligned_cols=132  Identities=14%  Similarity=0.227  Sum_probs=104.6

Q ss_pred             cccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcC--CCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhc
Q 016866          239 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDD--NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  316 (381)
Q Consensus       239 ~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~  316 (381)
                      .+++++|.++++++.+++++.+|++.|.+++++++||+|+  +|+++|++|..|+.+....+..........++.+.+..
T Consensus        13 ~~v~dim~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~v~~~m~~   92 (164)
T 2pfi_A           13 VRVEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPSRAPGHQQCLQDILAR   92 (164)
T ss_dssp             CBHHHHCBCCCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC-------CCCCBHHHHHHT
T ss_pred             CCHHHHcCCCCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHhhccccCCcccchhhhhhcc
Confidence            3567779999999999999999999999999999999996  79999999999999866432211111113466665542


Q ss_pred             CCCCCCCcccCCCc-ceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866          317 GQDANPSLGFNGQR-CQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  380 (381)
Q Consensus       317 ~~~~~~~~~~m~~~-~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~  380 (381)
                      ..        ...+ +.++.+++++.+|++.|.+++++++||+| + |+++|+||.+||++++.+
T Consensus        93 ~~--------~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~-g~l~Giit~~dil~~~~~  147 (164)
T 2pfi_A           93 GC--------PTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS-R-GRAVGCVSWVEMKKAISN  147 (164)
T ss_dssp             TC--------CCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE-T-TEEEEEEEHHHHHHHHHH
T ss_pred             cc--------cccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE-C-CEEEEEEEHHHHHHHHHh
Confidence            11        0112 68999999999999999999999999999 3 899999999999998753

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.72  E-value=3.6e-17  Score=137.63  Aligned_cols=125  Identities=18%  Similarity=0.198  Sum_probs=103.2

Q ss_pred             ccccccCC--CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhh-hcccccccccHHHHHhc
Q 016866          240 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKA-YAQIHLDEMNIHQALQL  316 (381)
Q Consensus       240 ~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~-~~~~~~~~~~v~~~l~~  316 (381)
                      +++++|.+  ++.++.+++++.+|++.|.+++++++||+|++|+++|++|.+|+++....+. +....+...++.+    
T Consensus        12 ~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~v~~----   87 (157)
T 2emq_A           12 TVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMMDAILGLERIEFERLETMKVEE----   87 (157)
T ss_dssp             BSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTCCEEEEEEHHHHHHHSBCSSSBCGGGGGTCBGGG----
T ss_pred             cHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCCCCEEEEeeHHHHHHHHhcccccchHHhcCCcHHH----
Confidence            45666876  8889999999999999999999999999998899999999999998654321 1000111234444    


Q ss_pred             CCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866          317 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  380 (381)
Q Consensus       317 ~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~  380 (381)
                               +|.+++.++.+++++.+|++.|.++++  +||+|+ +|+++|+||.+||++++..
T Consensus        88 ---------~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~-~g~~~Giit~~dil~~~~~  139 (157)
T 2emq_A           88 ---------VMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVEND-DGYFAGIFTRREVLKQLNK  139 (157)
T ss_dssp             ---------TCBCCCCEEETTSBHHHHHHHHHHSSE--EEEECS-SSSEEEEEEHHHHHHHHHH
T ss_pred             ---------HhCCCCceecCCCcHHHHHHHHhhCCE--EEEEcC-CCeEEEEEEHHHHHHHHHH
Confidence                     777889999999999999999999987  999994 6999999999999998753

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.72  E-value=5.6e-17  Score=139.23  Aligned_cols=118  Identities=15%  Similarity=0.189  Sum_probs=101.0

Q ss_pred             ccccccC--CCceEecCCCCHHHHHHHHHhCCCcEEEEEcCC-CcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhc
Q 016866          240 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  316 (381)
Q Consensus       240 ~v~~~~~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~  316 (381)
                      +++++|.  .+++++.+++++.+|++.|.+++++++||+|++ |+++|+++.+|++.....+.       ..++.     
T Consensus        37 ~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~~~~-------~~~v~-----  104 (173)
T 3ocm_A           37 SIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLITEG-------RVRRN-----  104 (173)
T ss_dssp             CSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHHHHHS-------SCCGG-----
T ss_pred             CHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHHhcCC-------cchhH-----
Confidence            4566685  468899999999999999999999999999976 89999999999998654321       12332     


Q ss_pred             CCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866          317 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  380 (381)
Q Consensus       317 ~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~  380 (381)
                                |.++++++.+++++.+|++.|.+++++++||+| ++|+++|+||..||++++++
T Consensus       105 ----------~~~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvd-e~g~lvGiIT~~Dil~~l~~  157 (173)
T 3ocm_A          105 ----------RLRDPIIVHESIGILRLMDTLKRSRGQLVLVAD-EFGAIEGLVTPIDVFEAIAG  157 (173)
T ss_dssp             ----------GSBCCCEECGGGCHHHHHHHHHHSTTCCEEEEC-TTCCEEEEECHHHHHHHHHC
T ss_pred             ----------hcCCCeEECCCCcHHHHHHHHHHcCCeEEEEEe-CCCCEEEEEeHHHHHHHHhC
Confidence                      224688999999999999999999999999999 47999999999999999975

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.72  E-value=5.1e-17  Score=136.92  Aligned_cols=125  Identities=9%  Similarity=0.142  Sum_probs=104.3

Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhCCCcE-EEEEcCCCcEEEEEeHHHHHHHHhhhh---hcc--------ccccc
Q 016866          240 RIGEANGRPFAMLRPTASLGSALALLVQADVSS-IPIVDDNDSLLDIYSRSDITALAKDKA---YAQ--------IHLDE  307 (381)
Q Consensus       240 ~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~-lpVvd~~g~lvGiis~~Di~~l~~~~~---~~~--------~~~~~  307 (381)
                      +++++|.+++.++.+++++.+|++.|.++++++ +||+|++ +++|++|..|+++......   ...        ....+
T Consensus        17 ~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~-~~vGivt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (157)
T 1o50_A           17 DVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDN-KLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMKRLIA   95 (157)
T ss_dssp             HHTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETT-EEEEEEEHHHHHHHHHHHHHCCCC-------CCCCCSS
T ss_pred             cHhhcccCCCceECCCCCHHHHHHHHHhCCCCccEEEEECC-EEEEEEEHHHHHHHHhhhHHhhhccHHHHHHHHHHHcC
Confidence            567789999999999999999999999999999 9999977 9999999999998643110   000        00112


Q ss_pred             ccHHHHHhcCCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866          308 MNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  380 (381)
Q Consensus       308 ~~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~  380 (381)
                      .++.+             +|.+ +.++.+++++.+|++.|.+++++++||+| ++|+++|+||..||++++.+
T Consensus        96 ~~v~~-------------im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~~vGiit~~dll~~l~~  153 (157)
T 1o50_A           96 KNASE-------------IMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVD-EKGEIVGDLNSLEILLALWK  153 (157)
T ss_dssp             CBHHH-------------HCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHHHHHH
T ss_pred             CcHHH-------------HcCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEc-CCCEEEEEEEHHHHHHHHHH
Confidence            34444             7877 89999999999999999999999999999 46999999999999998864

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.72  E-value=3.6e-17  Score=137.78  Aligned_cols=126  Identities=13%  Similarity=0.270  Sum_probs=105.2

Q ss_pred             ccccccccccC------CCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhccccccccc
Q 016866          236 TWVPRIGEANG------RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMN  309 (381)
Q Consensus       236 ~~~~~v~~~~~------~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~  309 (381)
                      ++..+++++|.      +++.++.+++++.+|++.|.+++++++||++ +|+++|++|.+|+++.+......   ..+.+
T Consensus         4 ~~~~~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~---~~~~~   79 (157)
T 4fry_A            4 SMSTTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVD-GDDIAGIVTERDYARKVVLQERS---SKATR   79 (157)
T ss_dssp             ---CBHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEES-SSSEEEEEEHHHHHHHSGGGTCC---SSSCB
T ss_pred             cHHHHHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEee-CCEEEEEEEHHHHHHHHHhccCC---ccccC
Confidence            34445777787      5679999999999999999999999999965 89999999999999865433211   11466


Q ss_pred             HHHHHhcCCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866          310 IHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  380 (381)
Q Consensus       310 v~~~l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~  380 (381)
                      +.+             +|..++.++.+++++.+|++.|.+++++++||+| + |+++|+||..||++++..
T Consensus        80 v~~-------------~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~-g~~~Giit~~dil~~l~~  135 (157)
T 4fry_A           80 VEE-------------IMTAKVRYVEPSQSTDECMALMTEHRMRHLPVLD-G-GKLIGLISIGDLVKSVIA  135 (157)
T ss_dssp             HHH-------------HSBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHHHT
T ss_pred             HHH-------------HcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEE-C-CEEEEEEEHHHHHHHHHH
Confidence            777             6667889999999999999999999999999999 3 899999999999999864

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.72  E-value=3.3e-17  Score=138.34  Aligned_cols=124  Identities=19%  Similarity=0.215  Sum_probs=103.8

Q ss_pred             ccccccCC--CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhh-hcccccccccHHHHHhc
Q 016866          240 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKA-YAQIHLDEMNIHQALQL  316 (381)
Q Consensus       240 ~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~-~~~~~~~~~~v~~~l~~  316 (381)
                      +++++|.+  ++.++.+++++.+|++.|.+++++++||+|++|+++|++|..|++....... +........++.+    
T Consensus        15 ~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~v~~----   90 (159)
T 1yav_A           15 TVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEFEKLDQITVEE----   90 (159)
T ss_dssp             BHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSSSBCGGGTTTSBHHH----
T ss_pred             hHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCCCCEEEEeEHHHHHHHhhhhcccchhhhccCCHHH----
Confidence            45666877  8999999999999999999999999999998899999999999998665321 1111112356666    


Q ss_pred             CCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 016866          317 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  379 (381)
Q Consensus       317 ~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~  379 (381)
                               +|.+++.++.+++++.+|++.|.++++  +||+|+ +|+++|+||.+||++++.
T Consensus        91 ---------~m~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~-~g~~vGiit~~dil~~~~  141 (159)
T 1yav_A           91 ---------VMLTDIPRLHINDPIMKGFGMVINNGF--VCVEND-EQVFEGIFTRRVVLKELN  141 (159)
T ss_dssp             ---------HSBCSCCEEETTSBHHHHHHHTTTCSE--EEEECT-TCBEEEEEEHHHHHHHHH
T ss_pred             ---------hcCCCCceEcCCCCHHHHHHHHHhCCE--EEEEeC-CCeEEEEEEHHHHHHHHH
Confidence                     677789999999999999999999987  999994 799999999999999875

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.71  E-value=7.1e-17  Score=142.46  Aligned_cols=117  Identities=15%  Similarity=0.203  Sum_probs=104.0

Q ss_pred             cccccccCCCceEecCCCCHHHHHHHHHhC---CCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHh
Q 016866          239 PRIGEANGRPFAMLRPTASLGSALALLVQA---DVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQ  315 (381)
Q Consensus       239 ~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~---~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~  315 (381)
                      .+++++|.++++++.+++++.+|++.|.+.   +++.+||+|++|+++|++|.+|++...          .+.++.+   
T Consensus        54 ~~v~~iM~~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~~----------~~~~v~~---  120 (205)
T 3kxr_A           54 NEIGRYTDHQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVRRYDIFKHE----------PHEPLIS---  120 (205)
T ss_dssp             TCGGGGCBCCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTTCBEEEEEEHHHHTTSC----------TTSBGGG---
T ss_pred             chHHhhccCceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCCCeEEEEEEHHHHHhCC----------CcchHHH---
Confidence            367788999999999999999999999987   899999999999999999999987521          0245555   


Q ss_pred             cCCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 016866          316 LGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  379 (381)
Q Consensus       316 ~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~  379 (381)
                                +|.++++++++++++.+|++.|.+++++.+|||| ++|+++|+||..||++.+.
T Consensus       121 ----------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD-~~g~lvGiIT~~Dil~~i~  173 (205)
T 3kxr_A          121 ----------LLSEDSRALTANTTLLDAAEAIEHSREIELPVID-DAGELIGRVTLRAATALVR  173 (205)
T ss_dssp             ----------GCCSSCCCEETTSCHHHHHHHHHTSSCSEEEEEC-TTSBEEEEEEHHHHHHHHH
T ss_pred             ----------HhcCCCeEECCCCCHHHHHHHHHhcCCCEEEEEc-CCCeEEEEEEHHHHHHHHH
Confidence                      7888899999999999999999999999999999 4799999999999999874

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.70  E-value=4.3e-17  Score=144.76  Aligned_cols=121  Identities=14%  Similarity=0.196  Sum_probs=105.4

Q ss_pred             cccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHH
Q 016866          235 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQAL  314 (381)
Q Consensus       235 g~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l  314 (381)
                      .+|..+++++|.++++++.+++++.+|+++|.+++++++||+|++|+++|++|.+|+.+...          +.++.+  
T Consensus         9 ~~~~~~~~~~~~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~l~Givt~~dl~~~~~----------~~~v~~--   76 (213)
T 1vr9_A            9 HHHHMKVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLDL----------DSSVFN--   76 (213)
T ss_dssp             ----CBGGGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTSCT----------TSBSGG--
T ss_pred             cccccCHHHhhcCCCeEECCCCcHHHHHHHHHHCCCCEEEEEcCCCEEEEEEEHHHHHhhcC----------CCcHHH--
Confidence            35777888999999999999999999999999999999999998899999999999876322          234444  


Q ss_pred             hcCCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 016866          315 QLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  379 (381)
Q Consensus       315 ~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~  379 (381)
                                 +|.+++.++.+++++.+|++.|.+++++++||+|+ +|+++|+||.+|+++++.
T Consensus        77 -----------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGiit~~Dil~~~~  129 (213)
T 1vr9_A           77 -----------KVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDE-EMRLKGAVSLHDFLEALI  129 (213)
T ss_dssp             -----------GCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECT-TCBEEEEEEHHHHHHHHH
T ss_pred             -----------HccCCCEEECCCCcHHHHHHHHHHhCCCEEEEEcC-CCEEEEEEEHHHHHHHHH
Confidence                       77778999999999999999999999999999994 699999999999999874

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.69  E-value=1.5e-16  Score=141.22  Aligned_cols=154  Identities=14%  Similarity=0.152  Sum_probs=100.6

Q ss_pred             CCCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccccc
Q 016866          153 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  232 (381)
Q Consensus       153 ~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l  232 (381)
                      ..|..+++++.+++++.+|+++|.+++++.+||+|+   ++   +++|++|..|+++++.             ..     
T Consensus        17 ~~~~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~---~~---~l~Givt~~dl~~~~~-------------~~-----   72 (213)
T 1vr9_A           17 KWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDR---EG---HFRGVVNKEDLLDLDL-------------DS-----   72 (213)
T ss_dssp             GGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECT---TS---BEEEEEEGGGGTTSCT-------------TS-----
T ss_pred             HhhcCCCeEECCCCcHHHHHHHHHHCCCCEEEEEcC---CC---EEEEEEEHHHHHhhcC-------------CC-----
Confidence            368899999999999999999999999999999975   46   8999999999976321             11     


Q ss_pred             cccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHH
Q 016866          233 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQ  312 (381)
Q Consensus       233 ~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~  312 (381)
                             .++++|.++++++.+++++.+|+++|.+++++++||+|++|+++|++|.+|+++......         ...+
T Consensus        73 -------~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~Dil~~~~~~~---------~~~~  136 (213)
T 1vr9_A           73 -------SVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEAL---------AMDV  136 (213)
T ss_dssp             -------BSGGGCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHHSC---------C---
T ss_pred             -------cHHHHccCCCEEECCCCcHHHHHHHHHHhCCCEEEEEcCCCEEEEEEEHHHHHHHHHHHh---------cCCC
Confidence                   345668889999999999999999999999999999998899999999999998654221         1111


Q ss_pred             HHhcCCCCCCCcccCCC-cceEEcCCCCHHHHHHHHHhCCCCEEEEEe
Q 016866          313 ALQLGQDANPSLGFNGQ-RCQMCLRSDPLHKVMERLANPGVRRLVIVE  359 (381)
Q Consensus       313 ~l~~~~~~~~~~~~m~~-~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd  359 (381)
                                   .+.+ .+.+.....++.+|.+.|.+++++.++|++
T Consensus       137 -------------~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~l~V~~  171 (213)
T 1vr9_A          137 -------------PGIRFSVLLEDKPGELRKVVDALALSNINILSVIT  171 (213)
T ss_dssp             ------------------------------------------------
T ss_pred             -------------CcEEEEEEeCCCCccHHHHHHHHHHCCCcEEEEEE
Confidence                         0000 111223334599999999999999999876

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.69  E-value=4.4e-17  Score=137.32  Aligned_cols=114  Identities=11%  Similarity=0.288  Sum_probs=99.4

Q ss_pred             ccccccCC--CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCC-cEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhc
Q 016866          240 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDND-SLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  316 (381)
Q Consensus       240 ~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g-~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~  316 (381)
                      +++++|.+  +++++.+++++.+|++.|.+++++++||+|+++ +++|++|.+|+++....+       .+.++.+    
T Consensus        39 ~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~-------~~~~v~~----  107 (156)
T 3oi8_A           39 EVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMFNP-------EQFHLKS----  107 (156)
T ss_dssp             BGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGSSCG-------GGCCHHH----
T ss_pred             CHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHcC-------CcccHHH----
Confidence            56777876  789999999999999999999999999999874 999999999998854432       1356776    


Q ss_pred             CCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHH
Q 016866          317 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVF  375 (381)
Q Consensus       317 ~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl  375 (381)
                               +|. ++.++++++++.+|++.|.+++++++||+| ++|+++|+||..||+
T Consensus       108 ---------im~-~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd-~~g~~~Givt~~Dil  155 (156)
T 3oi8_A          108 ---------ILR-PAVFVPEGKSLTALLKEFREQRNHMAIVID-EYGGTSGLVTFEDII  155 (156)
T ss_dssp             ---------HCB-CCCEEETTSBHHHHHHHHHHTTCCEEEEEC-TTSSEEEEEEHHHHC
T ss_pred             ---------HcC-CCEEECCCCCHHHHHHHHHhcCCeEEEEEC-CCCCEEEEEEHHHhc
Confidence                     564 488999999999999999999999999999 479999999999986

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.68  E-value=1.7e-16  Score=137.15  Aligned_cols=138  Identities=14%  Similarity=0.178  Sum_probs=102.8

Q ss_pred             ccccccCCC----ceEe--cCCCCHHHHHHHHHhCCCcEEEEE--cCCCcEEEEEeHHHHHHHHhhhhhcccccccccHH
Q 016866          240 RIGEANGRP----FAML--RPTASLGSALALLVQADVSSIPIV--DDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIH  311 (381)
Q Consensus       240 ~v~~~~~~~----~~~v--~~~~~l~~a~~~m~~~~~~~lpVv--d~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~  311 (381)
                      +++++|.+.    ++++  .+++++.+|++.|.+++++++||+  |++|+++|+||..|+++...........+.+.+..
T Consensus        12 ~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~~~~~~~~~~~~~~~   91 (185)
T 2j9l_A           12 LAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVSTSII   91 (185)
T ss_dssp             BHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCTTCEE
T ss_pred             cHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHhhcccCCCcccccee
Confidence            566678776    7888  999999999999999999999999  78899999999999998654321100000000000


Q ss_pred             HHH------hcCCCCCCCcc-cCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 016866          312 QAL------QLGQDANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  379 (381)
Q Consensus       312 ~~l------~~~~~~~~~~~-~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~  379 (381)
                      .+.      ........+++ +|..++.++.+++++.+|++.|.+++++++||+|  +|+++|+||..||++++.
T Consensus        92 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd--~g~~vGiit~~dll~~l~  164 (185)
T 2j9l_A           92 YFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH--NGRLLGIITKKDVLKHIA  164 (185)
T ss_dssp             ECSSSCCCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHH
T ss_pred             ecccCCcccccccccCccHHHhhCcCCeEeCCCCCHHHHHHHHHhCCCcEEEEEE--CCEEEEEEEHHHHHHHHH
Confidence            000      00000111222 7877899999999999999999999999999999  489999999999999875

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.68  E-value=1.8e-16  Score=133.76  Aligned_cols=118  Identities=18%  Similarity=0.228  Sum_probs=98.1

Q ss_pred             CCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccc
Q 016866          156 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLG  235 (381)
Q Consensus       156 ~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig  235 (381)
                      ..+++++.+++|+.+|+++|.+++++++||+|+   +|   +++|++|.+|+++++.......   .....         
T Consensus        24 ~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~---~~---~lvGiit~~Di~~~~~~~~~~~---~~~~~---------   85 (156)
T 3k6e_A           24 AKNLAVLIDTHNADHATLLLSQMTYTRVPVVTD---EK---QFVGTIGLRDIMAYQMEHDLSQ---EIMAD---------   85 (156)
T ss_dssp             TTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC----C---BEEEEEEHHHHHHHHHHHTCCH---HHHTT---------
T ss_pred             hhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcC---CC---cEEEEEEecchhhhhhhccccc---ccccc---------
Confidence            367899999999999999999999999999975   57   8999999999999876532110   01111         


Q ss_pred             ccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHh
Q 016866          236 TWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  296 (381)
Q Consensus       236 ~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~  296 (381)
                         ..++++|.+++.++.+++++.+|+++|.++++  +||||++|+++|+||.+|+++.+.
T Consensus        86 ---~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~--lpVVd~~g~l~GiiT~~Dil~~~~  141 (156)
T 3k6e_A           86 ---TDIVHMTKTDVAVVSPDFTITEVLHKLVDESF--LPVVDAEGIFQGIITRKSILKAVN  141 (156)
T ss_dssp             ---SBGGGTCBCSCCCBCTTCCHHHHHHHTTTSSE--EEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             ---cCHHHhhcCCceecccccHHHHHHHHHHHcCC--eEEEecCCEEEEEEEHHHHHHHHH
Confidence               24556699999999999999999999988764  999999999999999999999765

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.68  E-value=3.7e-16  Score=130.19  Aligned_cols=116  Identities=14%  Similarity=0.143  Sum_probs=100.4

Q ss_pred             CCCCC--CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccc
Q 016866          153 RPCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVS  230 (381)
Q Consensus       153 ~~~~~--~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~  230 (381)
                      .+|.+  +++++.+++++.+|++.|.+++++++||+|+  ..|   +++|++|.+|+++++....          ..   
T Consensus        27 diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~--~~~---~lvGivt~~dl~~~~~~~~----------~~---   88 (148)
T 3lv9_A           27 EIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRK--NKD---DILGFVHIRDLYNQKINEN----------KI---   88 (148)
T ss_dssp             GTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESS--STT---SEEEEEEHHHHHHHHHHHS----------CC---
T ss_pred             HccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcC--CCC---cEEEEEEHHHHHHHHhcCC----------Cc---
Confidence            37777  8999999999999999999999999999965  126   8999999999999765421          12   


Q ss_pred             cccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHh
Q 016866          231 SIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  296 (381)
Q Consensus       231 ~l~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~  296 (381)
                               .++++| +++.++.+++++.+|++.|.+++++.+||+|++|+++|++|..|+++.+.
T Consensus        89 ---------~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~  144 (148)
T 3lv9_A           89 ---------ELEEIL-RDIIYISENLTIDKALERIRKEKLQLAIVVDEYGGTSGVVTIEDILEEIV  144 (148)
T ss_dssp             ---------CGGGTC-BCCEEEETTSBHHHHHHHHHHHTCSEEEEECTTSSEEEEEEHHHHHHHHH
T ss_pred             ---------cHHHhc-CCCeEECCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHh
Confidence                     344558 78899999999999999999999999999999999999999999998655

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.68  E-value=3.2e-16  Score=142.05  Aligned_cols=140  Identities=16%  Similarity=0.283  Sum_probs=106.1

Q ss_pred             cccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCC--CcEEEEEeHHHHHHHHhhhhh--ccc-----------
Q 016866          239 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN--DSLLDIYSRSDITALAKDKAY--AQI-----------  303 (381)
Q Consensus       239 ~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--g~lvGiis~~Di~~l~~~~~~--~~~-----------  303 (381)
                      ..++++|.++++++.+++++.+|.++|.+++++++||||++  |+++|+|+++||++++.....  ...           
T Consensus        13 ~~v~diMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~~~~~~~~~~~~~~~~~~~   92 (250)
T 2d4z_A           13 IQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPAAAAEADEEG   92 (250)
T ss_dssp             CBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCCCCBCCC-
T ss_pred             CChHHhcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHhhhhhhhhhhhhhcccccc
Confidence            46788899999999999999999999999999999999963  689999999999986553210  000           


Q ss_pred             -----------------cccc---------------------------------------------------------cc
Q 016866          304 -----------------HLDE---------------------------------------------------------MN  309 (381)
Q Consensus       304 -----------------~~~~---------------------------------------------------------~~  309 (381)
                                       .+.+                                                         ++
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  172 (250)
T 2d4z_A           93 RNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVASRFEEMLT  172 (250)
T ss_dssp             --------------------------------------------------------------------------CCSCCB
T ss_pred             cccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCcccccccC
Confidence                             0000                                                         00


Q ss_pred             HHHHHhc-CCCCCCCc---c-cCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866          310 IHQALQL-GQDANPSL---G-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  380 (381)
Q Consensus       310 v~~~l~~-~~~~~~~~---~-~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~  380 (381)
                      ..+.... ......++   . +|+..++++.++++|.+|..+|...|++++||++  .|+++||||+.||++++.+
T Consensus       173 ~~~~~~~~~~~l~~~Vdl~~~~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~--~GrLVGIVTrkDl~kai~~  246 (250)
T 2d4z_A          173 LEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS--MGKLVGVVALAEIQAAIEG  246 (250)
T ss_dssp             HHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHC
T ss_pred             hhhhhhHHHHhcCceeccccccccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEE--CCEEEEEEEHHHHHHHHHH
Confidence            0000000 00011222   1 5888999999999999999999999999999998  4999999999999999865

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.67  E-value=5.9e-16  Score=136.51  Aligned_cols=122  Identities=15%  Similarity=0.125  Sum_probs=106.7

Q ss_pred             ccCCCCCCCCCCCceEeCCCCCHHHHHHHHHhC---CcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCC
Q 016866          146 RQMDGNGRPCPRPLVQAGPYDSLKEVALKILQN---KVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSL  222 (381)
Q Consensus       146 ~~~~~~g~~~~~~~i~v~~~~sl~~a~~~m~~~---~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~  222 (381)
                      +..+.+|.+|..+++++.+++++.+|++.|.++   +++.+||+|+   .|   +++|++|.+|++..            
T Consensus        51 ~~~~~v~~iM~~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~---~~---~lvGivt~~dll~~------------  112 (205)
T 3kxr_A           51 YSENEIGRYTDHQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDE---AD---KYLGTVRRYDIFKH------------  112 (205)
T ss_dssp             SCTTCGGGGCBCCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECT---TC---BEEEEEEHHHHTTS------------
T ss_pred             CCcchHHhhccCceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcC---CC---eEEEEEEHHHHHhC------------
Confidence            667778889999999999999999999999987   8999999976   57   89999999999751            


Q ss_pred             ccccCccccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhh
Q 016866          223 PILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK  298 (381)
Q Consensus       223 ~~~~~~i~~l~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~  298 (381)
                       ....            .++++|.++++++.+++++.+|++.|.+++++.+||||++|+++|+||..|++..+.+.
T Consensus       113 -~~~~------------~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~g~lvGiIT~~Dil~~i~~e  175 (205)
T 3kxr_A          113 -EPHE------------PLISLLSEDSRALTANTTLLDAAEAIEHSREIELPVIDDAGELIGRVTLRAATALVREH  175 (205)
T ss_dssp             -CTTS------------BGGGGCCSSCCCEETTSCHHHHHHHHHTSSCSEEEEECTTSBEEEEEEHHHHHHHHHHH
T ss_pred             -CCcc------------hHHHHhcCCCeEECCCCCHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHHHHH
Confidence             0112            34556888999999999999999999999999999999999999999999999977643

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.67  E-value=3.7e-16  Score=127.31  Aligned_cols=119  Identities=11%  Similarity=0.116  Sum_probs=99.1

Q ss_pred             CCCCCC--CCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCc
Q 016866          151 NGRPCP--RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP  228 (381)
Q Consensus       151 ~g~~~~--~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~  228 (381)
                      ++.+|.  .+++++.+++++.+|++.|.+++++++||+++  ..|   +++|++|.+|+++++....         ... 
T Consensus         8 v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~--~~~---~~~Givt~~dl~~~~~~~~---------~~~-   72 (130)
T 3i8n_A            8 VTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSE--QKD---NIIGFVHRLELFKMQQSGS---------GQK-   72 (130)
T ss_dssp             CTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESS--STT---CEEEECCHHHHHHHHHTTT---------TTS-
T ss_pred             HhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeC--CCC---cEEEEEEHHHHHHHHhcCC---------CcC-
Confidence            344777  56779999999999999999999999999965  226   8999999999999765321         012 


Q ss_pred             cccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHh
Q 016866          229 VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  296 (381)
Q Consensus       229 i~~l~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~  296 (381)
                                 .++++|. ++.++.+++++.+|++.|.+++++.+||+|++|+++|++|..|+++.+.
T Consensus        73 -----------~v~~~m~-~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~vGivt~~dil~~l~  128 (130)
T 3i8n_A           73 -----------QLGAVMR-PIQVVLNNTALPKVFDQMMTHRLQLALVVDEYGTVLGLVTLEDIFEHLV  128 (130)
T ss_dssp             -----------BHHHHSE-ECCEEETTSCHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             -----------CHHHHhc-CCcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCCCEEEEEEHHHHHHHHc
Confidence                       3344573 5789999999999999999999999999999999999999999998654

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.66  E-value=8.9e-16  Score=131.46  Aligned_cols=119  Identities=10%  Similarity=0.062  Sum_probs=102.2

Q ss_pred             CCCCCC--CCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCc
Q 016866          151 NGRPCP--RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP  228 (381)
Q Consensus       151 ~g~~~~--~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~  228 (381)
                      ++.+|.  .+++++.+++++.+|++.|.+++++++||+++  ..+   +++|++|..|+++++....          .. 
T Consensus        44 v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~--~~~---~lvGivt~~dl~~~~~~~~----------~~-  107 (172)
T 3lhh_A           44 ISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRN--NVD---DMVGIISAKQLLSESIAGE----------RL-  107 (172)
T ss_dssp             TTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESS--STT---SEEEEEEHHHHHHHHHTTC----------CC-
T ss_pred             HHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeC--CCC---eEEEEEEHHHHHHHHhhcC----------cc-
Confidence            455788  78899999999999999999999999999965  126   8999999999999764320          12 


Q ss_pred             cccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 016866          229 VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  297 (381)
Q Consensus       229 i~~l~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~  297 (381)
                                 .++++| ++++++.+++++.+|+++|.+++++.+||+|++|+++|+||..|+++.+..
T Consensus       108 -----------~v~~im-~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dil~~l~~  164 (172)
T 3lhh_A          108 -----------ELVDLV-KNCNFVPNSLSGMELLEHFRTTGSQMVFVVDEYGDLKGLVTLQDMMDALTG  164 (172)
T ss_dssp             -----------CGGGGC-BCCEEEETTCCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHT
T ss_pred             -----------cHHHHh-cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEeCCCCEEEEeeHHHHHHHHhC
Confidence                       345558 788999999999999999999999999999989999999999999997653

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.65  E-value=1.2e-15  Score=122.40  Aligned_cols=114  Identities=20%  Similarity=0.331  Sum_probs=100.7

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccc
Q 016866          154 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  233 (381)
Q Consensus       154 ~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~  233 (381)
                      +|.++++++.+++++.+|++.|.+++.+.+||+|+   +|   +++|+++..|+++++....           .      
T Consensus         6 im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~---~~~G~vt~~dl~~~~~~~~-----------~------   62 (122)
T 3kpb_A            6 ILSKPPITAHSNISIMEAAKILIKHNINHLPIVDE---HG---KLVGIITSWDIAKALAQNK-----------K------   62 (122)
T ss_dssp             HCCSCCCCEETTSBHHHHHHHHHHHTCSCEEEECT---TS---BEEEEECHHHHHHHHHTTC-----------C------
T ss_pred             hhCCCCEEeCCCCcHHHHHHHHHHcCCCeEEEECC---CC---CEEEEEEHHHHHHHHHhcc-----------c------
Confidence            57788999999999999999999999999999975   57   8999999999999765311           1      


Q ss_pred             ccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHh
Q 016866          234 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  296 (381)
Q Consensus       234 ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~  296 (381)
                            .++++|.+++.++.+++++.++++.|.+++.+.+||+|++|+++|++|..|+++++.
T Consensus        63 ------~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Givt~~dl~~~l~  119 (122)
T 3kpb_A           63 ------TIEEIMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLFG  119 (122)
T ss_dssp             ------BGGGTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHC
T ss_pred             ------CHHHHhcCCCeEECCCCCHHHHHHHHHHhCCCeEEEECCCCCEEEEEeHHHHHHHhh
Confidence                  244558788999999999999999999999999999998899999999999998654

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.64  E-value=2.9e-16  Score=127.40  Aligned_cols=115  Identities=11%  Similarity=0.105  Sum_probs=95.9

Q ss_pred             CCCC--CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccc
Q 016866          154 PCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  231 (381)
Q Consensus       154 ~~~~--~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~  231 (381)
                      +|..  +++++.+++++.+|++.|.+++++++||+++  ..|   +++|++|..|+++++....         ..     
T Consensus         8 iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~--~~~---~~vGivt~~dl~~~~~~~~---------~~-----   68 (127)
T 3nqr_A            8 IMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISE--DKD---HIEGILMAKDLLPFMRSDA---------EA-----   68 (127)
T ss_dssp             HSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESS--STT---CEEEEEEGGGGGGGGSTTC---------CC-----
T ss_pred             hcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcC--CCC---cEEEEEEHHHHHHHHhccC---------CC-----
Confidence            4663  4889999999999999999999999999965  226   8999999999998653211         11     


Q ss_pred             ccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHH
Q 016866          232 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  295 (381)
Q Consensus       232 l~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~  295 (381)
                             ..++++|.+ +.++.+++++.+|++.|.+++++.+||+|++|+++|++|..|+++.+
T Consensus        69 -------~~v~~~m~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Giit~~dll~~l  124 (127)
T 3nqr_A           69 -------FSMDKVLRT-AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELI  124 (127)
T ss_dssp             -------CCHHHHCBC-CCEEETTCBHHHHHHHHHHTTCCEEEEECTTSCEEEEEEHHHHHHHC
T ss_pred             -------CCHHHHcCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHH
Confidence                   134455754 67899999999999999999999999999999999999999999854

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.64  E-value=6.9e-16  Score=143.17  Aligned_cols=117  Identities=15%  Similarity=0.244  Sum_probs=104.6

Q ss_pred             cccccccCCCceEecCCCCHHHHHHHHHhC-----CCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHH
Q 016866          239 PRIGEANGRPFAMLRPTASLGSALALLVQA-----DVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQA  313 (381)
Q Consensus       239 ~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~-----~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~  313 (381)
                      .+++++|.++++++.+++++.+|++.|.++     +++++||+|++|+++|++|.+|++...          .+.++.+ 
T Consensus       137 ~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~~~lvGivt~~dll~~~----------~~~~v~~-  205 (286)
T 2oux_A          137 ETAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVND----------DDTLIAD-  205 (286)
T ss_dssp             TBHHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTSC----------TTSBHHH-
T ss_pred             HHHHHhCCCCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCCCeEEEEEEHHHHHcCC----------CCCcHHH-
Confidence            467788999999999999999999999987     889999999999999999999997631          1356776 


Q ss_pred             HhcCCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 016866          314 LQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  379 (381)
Q Consensus       314 l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~  379 (381)
                                  +|.++++++++++++.+|++.|.+++++++|||| ++|+++|+||..||++++.
T Consensus       206 ------------im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd-~~g~lvGiIT~~Dil~~i~  258 (286)
T 2oux_A          206 ------------ILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTD-YDDHLLGIVTVDDIIDVID  258 (286)
T ss_dssp             ------------HSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEEC-TTCBEEEEEEHHHHHHHHH
T ss_pred             ------------HcCCCCeeecCCCCHHHHHHHHHHcCCcEEEEEc-CCCeEEEEEEHHHHHHHHH
Confidence                        6777899999999999999999999999999999 4799999999999999874

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.64  E-value=8.5e-16  Score=125.05  Aligned_cols=114  Identities=10%  Similarity=0.108  Sum_probs=95.3

Q ss_pred             CCC--CCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccc
Q 016866          154 PCP--RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  231 (381)
Q Consensus       154 ~~~--~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~  231 (381)
                      +|.  .+++++.+++++.+|++.|.+++++++||+++  ..|   +++|++|.+|+++++..           ...    
T Consensus        10 iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~--~~~---~~~Givt~~dl~~~~~~-----------~~~----   69 (129)
T 3jtf_A           10 IMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYED--DRD---NIIGILLAKDLLRYMLE-----------PAL----   69 (129)
T ss_dssp             HCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESS--STT---CEEEEEEGGGGGGGGTC-----------TTS----
T ss_pred             hCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcC--CCC---cEEEEEEHHHHHhHhcc-----------CCc----
Confidence            465  67889999999999999999999999999965  226   89999999999885531           011    


Q ss_pred             ccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHh
Q 016866          232 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  296 (381)
Q Consensus       232 l~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~  296 (381)
                              .++++|.+ +.++.+++++.+|+++|.+++.+.+||+|++|+++|++|..|+++.+.
T Consensus        70 --------~v~~~m~~-~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~~Giit~~Dil~~l~  125 (129)
T 3jtf_A           70 --------DIRSLVRP-AVFIPEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTMEDVLEQIV  125 (129)
T ss_dssp             --------CGGGGCBC-CCEEETTCBHHHHHHHHHTSSCCEEEEECC-CCEEEEEEHHHHHHHHH
T ss_pred             --------CHHHHhCC-CeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHh
Confidence                    23444654 789999999999999999999999999998899999999999998654

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.63  E-value=7e-16  Score=125.25  Aligned_cols=117  Identities=18%  Similarity=0.187  Sum_probs=100.4

Q ss_pred             CCCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccccc
Q 016866          153 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  232 (381)
Q Consensus       153 ~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l  232 (381)
                      .+|.++++++.+++++.+|++.|.+++.+.+||+|+    |   +++|++|..|+++++.....        .       
T Consensus         9 ~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~----~---~~~Givt~~dl~~~~~~~~~--------~-------   66 (128)
T 3gby_A            9 YLAETDYPVFTLGGSTADAARRLAASGCACAPVLDG----E---RYLGMVHLSRLLEGRKGWPT--------V-------   66 (128)
T ss_dssp             GGCBCCSCCEETTSBHHHHHHHHHHHTCSEEEEEET----T---EEEEEEEHHHHHTTCSSSCC--------T-------
T ss_pred             HhhcCCcceECCCCCHHHHHHHHHHCCCcEEEEEEC----C---EEEEEEEHHHHHHHHhhCCc--------c-------
Confidence            368889999999999999999999999999999964    5   89999999999875432110        0       


Q ss_pred             cccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHh
Q 016866          233 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  296 (381)
Q Consensus       233 ~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~  296 (381)
                           ...++++|.+++.++.+++++.++++.|.+++.+++||+|++|+++|++|..|+++.+.
T Consensus        67 -----~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g~~~Giit~~dll~~l~  125 (128)
T 3gby_A           67 -----KEKLGEELLETVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILGFLA  125 (128)
T ss_dssp             -----TCBCCGGGCBCCCCBCTTSBGGGSHHHHHHCSSSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             -----cCcHHHHccCCCcEECCCCCHHHHHHHHHhCCCcEEEEECCCCCEEEEEEHHHHHHHHH
Confidence                 02345668888999999999999999999999999999999999999999999998765

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.63  E-value=2.3e-15  Score=122.78  Aligned_cols=118  Identities=22%  Similarity=0.329  Sum_probs=101.3

Q ss_pred             CCCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccccc
Q 016866          153 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  232 (381)
Q Consensus       153 ~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l  232 (381)
                      .+|.++++++.+++++.+|++.|.+++.+.+||+|    +|   +++|++|..|+++++.....        ..      
T Consensus         8 ~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd----~~---~~~Givt~~dl~~~~~~~~~--------~~------   66 (133)
T 2ef7_A            8 EYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD----GN---KPVGIITERDIVKAIGKGKS--------LE------   66 (133)
T ss_dssp             GTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE----TT---EEEEEEEHHHHHHHHHTTCC--------TT------
T ss_pred             HhccCCCEEECCCCcHHHHHHHHHhcCCCEEEEEE----CC---EEEEEEcHHHHHHHHhcCCC--------cc------
Confidence            37888899999999999999999999999999996    26   89999999999987654211        11      


Q ss_pred             cccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 016866          233 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  297 (381)
Q Consensus       233 ~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~  297 (381)
                            ..++++|.+++.++.+++++.+|++.|.+++.+.+||+|++|+++|++|..|+++.+..
T Consensus        67 ------~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~  125 (133)
T 2ef7_A           67 ------TKAEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDD  125 (133)
T ss_dssp             ------CBGGGTSEECCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred             ------cCHHHHcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHH
Confidence                  23455577789999999999999999999999999999989999999999999986653

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.63  E-value=1.3e-15  Score=140.64  Aligned_cols=117  Identities=18%  Similarity=0.272  Sum_probs=102.1

Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhC-----CCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHH
Q 016866          240 RIGEANGRPFAMLRPTASLGSALALLVQA-----DVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQAL  314 (381)
Q Consensus       240 ~v~~~~~~~~~~v~~~~~l~~a~~~m~~~-----~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l  314 (381)
                      +++++|.++++++.+++++.+|++.|.++     +++++||+|++|+++|++|.+|++...          .+.++.+  
T Consensus       136 ~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~~----------~~~~v~~--  203 (278)
T 2yvy_A          136 EAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVAD----------PRTRVAE--  203 (278)
T ss_dssp             BGGGTCBSCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTTCBEEEEEEHHHHHHSC----------TTCBSTT--
T ss_pred             hHHhhcCCCceEECCCCcHHHHHHHHHHccCCccceeEEEEECCCCCEEEEEEHHHHhcCC----------CCCcHHH--
Confidence            56777999999999999999999999987     789999999899999999999998631          0234444  


Q ss_pred             hcCCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866          315 QLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  380 (381)
Q Consensus       315 ~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~  380 (381)
                                 +|.++++++++++++.+|++.|.+++.+.+|||| ++|+++|+||..||++.+.+
T Consensus       204 -----------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~lvGivT~~Dil~~i~~  257 (278)
T 2yvy_A          204 -----------IMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVD-EEGRLVGIVTVDDVLDVLEA  257 (278)
T ss_dssp             -----------TSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEEC-TTSBEEEEEEHHHHHHHC--
T ss_pred             -----------HhCCCCeEEeCCCCHHHHHHHHHhcCCCEEEEEe-CCCeEEEEEEHHHHHHHHHH
Confidence                       7877899999999999999999999999999999 47999999999999998753

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.63  E-value=7.3e-16  Score=126.67  Aligned_cols=117  Identities=9%  Similarity=0.093  Sum_probs=97.1

Q ss_pred             CCC--CCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccc
Q 016866          154 PCP--RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  231 (381)
Q Consensus       154 ~~~--~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~  231 (381)
                      +|.  .+++++.+++++.+|++.|.+++++++||+++  ..|   +++|++|..|+++++....        ....    
T Consensus         8 iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~--~~~---~~vGivt~~dl~~~~~~~~--------~~~~----   70 (136)
T 3lfr_A            8 IMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGE--SHD---DVLGVLLAKDLLPLILKAD--------GDSD----   70 (136)
T ss_dssp             HSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESS--STT---CEEEEEEGGGGGGGGGSSS--------GGGC----
T ss_pred             ccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcC--CCC---cEEEEEEHHHHHHHHHhcc--------CCCc----
Confidence            455  57899999999999999999999999999965  226   7999999999998654210        0112    


Q ss_pred             ccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHh
Q 016866          232 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  296 (381)
Q Consensus       232 l~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~  296 (381)
                              .++++|.+ +.++.+++++.+|+++|.+++++.+||+|++|+++|++|.+|+++.+.
T Consensus        71 --------~v~~~m~~-~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~  126 (136)
T 3lfr_A           71 --------DVKKLLRP-ATFVPESKRLNVLLREFRANHNHMAIVIDEYGGVAGLVTIEDVLEQIV  126 (136)
T ss_dssp             --------CGGGTCBC-CCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHTTC-
T ss_pred             --------CHHHHcCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHh
Confidence                    34455765 889999999999999999999999999999999999999999998544

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.62  E-value=4.1e-15  Score=119.81  Aligned_cols=117  Identities=17%  Similarity=0.229  Sum_probs=99.5

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccc
Q 016866          154 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  233 (381)
Q Consensus       154 ~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~  233 (381)
                      +|.++++++.+++++.+|++.|.+++.+.+||+|    +|   +++|++|..|+++++.....       ...       
T Consensus         6 ~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd----~~---~~~G~it~~dl~~~~~~~~~-------~~~-------   64 (125)
T 1pbj_A            6 VMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK----EG---VRVGIVTTWDVLEAIAEGDD-------LAE-------   64 (125)
T ss_dssp             HCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE----TT---EEEEEEEHHHHHHHHHHTCC-------TTT-------
T ss_pred             hcCCCceEECCCCcHHHHHHHHHHcCCCEEEEEe----CC---eeEEEEeHHHHHHHHhcCCc-------ccc-------
Confidence            5778899999999999999999999999999996    36   89999999999987654211       011       


Q ss_pred             ccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 016866          234 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  297 (381)
Q Consensus       234 ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~  297 (381)
                           ..++++|.+++.++.+++++.++++.|.+++++++||+|+ |+++|++|.+|+++.+..
T Consensus        65 -----~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~~~~Gvit~~dl~~~l~~  122 (125)
T 1pbj_A           65 -----VKVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEED-DEIIGVISATDILRAKMA  122 (125)
T ss_dssp             -----SBHHHHCBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHHC-
T ss_pred             -----cCHHHHcCCCCeEECCCCCHHHHHHHHHhcCCcEEEEEEC-CEEEEEEEHHHHHHHHHh
Confidence                 2345558888999999999999999999999999999997 999999999999986653

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.62  E-value=8.8e-16  Score=127.97  Aligned_cols=132  Identities=17%  Similarity=0.245  Sum_probs=101.4

Q ss_pred             CCCCC--CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccc
Q 016866          153 RPCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVS  230 (381)
Q Consensus       153 ~~~~~--~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~  230 (381)
                      .+|.+  +++++.+++++.+|++.|.+++++.+||+|+   +|   +++|++|..|+++++......     ..+.. ..
T Consensus         9 ~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~---~~~G~vt~~dl~~~~~~~~~~-----~~~~~-~~   76 (152)
T 4gqw_A            9 EFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDE---DW---KLVGLVSDYDLLALDSGDSTW-----KTFNA-VQ   76 (152)
T ss_dssp             GTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECT---TC---BEEEEEEHHHHTTCC----CC-----HHHHH-HH
T ss_pred             hccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeC---CC---eEEEEEEHHHHHHhhcccCcc-----cchHH-HH
Confidence            36766  7999999999999999999999999999976   57   899999999998754321100     00000 00


Q ss_pred             cccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHh
Q 016866          231 SIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  296 (381)
Q Consensus       231 ~l~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~  296 (381)
                      ..........++++|.++++++.+++++.+|+++|.+++++.+||+|++|+++|++|.+|+++.+.
T Consensus        77 ~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Giit~~dil~~~~  142 (152)
T 4gqw_A           77 KLLSKTNGKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAAL  142 (152)
T ss_dssp             TC-----CCBHHHHSEESCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             HHHHHhccccHHHhcCCCceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcEEEEEEHHHHHHHHH
Confidence            000011123466778888999999999999999999999999999999999999999999999665

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.62  E-value=2.1e-15  Score=127.42  Aligned_cols=126  Identities=17%  Similarity=0.230  Sum_probs=103.2

Q ss_pred             CCCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccccc
Q 016866          153 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  232 (381)
Q Consensus       153 ~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l  232 (381)
                      .+|.++++++.+++++.+|++.|.+++++.+||+|+   +|   +++|++|..|+++++...+.....          . 
T Consensus         9 dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~---~~---~lvGivt~~dl~~~~~~~~~~~~~----------~-   71 (160)
T 2o16_A            9 DMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDA---NK---KLLGIVSQRDLLAAQESSLQRSAQ----------G-   71 (160)
T ss_dssp             GTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TC---BEEEEEEHHHHHHHHHHHCC----------------
T ss_pred             HHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEEeHHHHHHHHHHhhccccc----------c-
Confidence            378888999999999999999999999999999975   57   899999999999987654321100          0 


Q ss_pred             cccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHh
Q 016866          233 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  296 (381)
Q Consensus       233 ~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~  296 (381)
                      .-......+.++|.+++.++.+++++.+|++.|.+++++++||+|+ |+++|+||..|+++.+.
T Consensus        72 ~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~lvGiit~~dil~~~~  134 (160)
T 2o16_A           72 DSLAFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK-DVLVGIITDSDFVTIAI  134 (160)
T ss_dssp             ----CCCBHHHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET-TEEEEEECHHHHHHHHH
T ss_pred             cchhcccCHHHHhcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEEC-CEEEEEEEHHHHHHHHH
Confidence            0001123456678889999999999999999999999999999997 99999999999998655

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.62  E-value=2.5e-15  Score=126.86  Aligned_cols=117  Identities=13%  Similarity=0.203  Sum_probs=99.1

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccc
Q 016866          154 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  233 (381)
Q Consensus       154 ~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~  233 (381)
                      +|.++ +++.+++++.+|++.|.+++++.+||+|+   +|   +++|++|..|+++++....       ....       
T Consensus        22 im~~~-~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~-------~~~~-------   80 (159)
T 3fv6_A           22 FQSIP-VVIHENVSVYDAICTMFLEDVGTLFVVDR---DA---VLVGVLSRKDLLRASIGQQ-------ELTS-------   80 (159)
T ss_dssp             SCBCC-CEEETTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHHHHTSCS-------CTTT-------
T ss_pred             HcCCC-EEECCCCcHHHHHHHHHHCCCCEEEEEcC---CC---cEEEEEeHHHHHHHhhccC-------cccC-------
Confidence            67764 59999999999999999999999999975   56   8999999999999764321       0111       


Q ss_pred             ccccccccccccCC--CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCC---cEEEEEeHHHHHHHHh
Q 016866          234 LGTWVPRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDND---SLLDIYSRSDITALAK  296 (381)
Q Consensus       234 ig~~~~~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g---~lvGiis~~Di~~l~~  296 (381)
                           ..++++|.+  ++.++.+++++.+|+++|.+++++++||+|++|   +++|+||..|+++++.
T Consensus        81 -----~~v~~~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit~~dil~~l~  143 (159)
T 3fv6_A           81 -----VPVHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKILV  143 (159)
T ss_dssp             -----CBGGGTSEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSSSEEEEEEEEHHHHHHHHH
T ss_pred             -----cCHHHHHcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCcceeEEEEEEHHHHHHHHH
Confidence                 234555877  889999999999999999999999999999888   9999999999999665

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.61  E-value=4.8e-15  Score=121.72  Aligned_cols=119  Identities=15%  Similarity=0.287  Sum_probs=100.2

Q ss_pred             CCCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccccc
Q 016866          153 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  232 (381)
Q Consensus       153 ~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l  232 (381)
                      .+|.++++++.+++++.+|++.|.+++++.+||+|+   +|   +++|++|..|+++.+.....                
T Consensus        11 ~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~~----------------   68 (138)
T 2yzi_A           11 VYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVIND---DG---NVVGFFTKSDIIRRVIVPGL----------------   68 (138)
T ss_dssp             GTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHHHTTTTCC----------------
T ss_pred             HHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEEeHHHHHHHHHhcCC----------------
Confidence            378889999999999999999999999999999975   56   89999999999843221100                


Q ss_pred             cccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 016866          233 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  297 (381)
Q Consensus       233 ~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~  297 (381)
                         .....++++|.+++.++.+++++.+|++.|.+++++++ |+|++|+++|++|..|+++.+..
T Consensus        69 ---~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g~~~Giit~~dil~~~~~  129 (138)
T 2yzi_A           69 ---PYDIPVERIMTRNLITANVNTPLGEVLRKMAEHRIKHI-LIEEEGKIVGIFTLSDLLEASRR  129 (138)
T ss_dssp             ---CTTSBGGGTCBCSCCEEETTSBHHHHHHHHHHHTCSEE-EEEETTEEEEEEEHHHHHHHHHC
T ss_pred             ---cccCCHHHHhhCCCeEECCCCcHHHHHHHHHhcCCCEE-EECCCCCEEEEEEHHHHHHHHHH
Confidence               01124556688899999999999999999999999999 99988999999999999997653

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.61  E-value=5.9e-16  Score=140.24  Aligned_cols=212  Identities=13%  Similarity=0.174  Sum_probs=130.9

Q ss_pred             CcccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeecccCCCCcEEEEeehHHHHHHHHHhccCCCCCChhHHhhccH
Q 016866           53 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI  132 (381)
Q Consensus        53 ~~~~d~~p~s~~vi~ld~~~~v~~A~~~l~~~~i~~~pV~d~~~~~~vGilt~~D~~~il~~~~~~~~~~~~~~l~~~~i  132 (381)
                      .++.|+|-  .++++++++.++.+|++.|.++++..+||+|++ ++++|++|..|+++.+.....    .........++
T Consensus         7 ~~v~~im~--~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~-~~l~Giit~~di~~~~~~~~~----~~~~~~~~~~~   79 (245)
T 3l2b_A            7 LKVEDLEM--DKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGN-NHLLGMLSTSNITATYMDIWD----SNILAKSATSL   79 (245)
T ss_dssp             CBGGGSCC--BCCCCBCTTCBHHHHHHHHHHTTCSEEEEECTT-CBEEEEEEHHHHHHHHHCCCC----TTHHHHTTCCH
T ss_pred             CcHHHhcC--CCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHHhhh----hhhhhhccCCH
Confidence            46778884  468999999999999999999999999999975 569999999999987642211    00011111122


Q ss_pred             HHHHHHHHhh--hc-cc--cCCC------------CCCCCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCC-
Q 016866          133 SAWKVGKLQL--NL-KR--QMDG------------NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGS-  194 (381)
Q Consensus       133 ~~~~~~~~~~--~~-~~--~~~~------------~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~-  194 (381)
                      ..+.+.....  .. ..  ...+            ........++.+.   .-.++...+.+.+++.+++++....... 
T Consensus        80 ~~v~~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~~~ivIvg---dr~~~~~~~i~~~~~~liit~~~~~~~~v  156 (245)
T 3l2b_A           80 DNILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAG---DRAEIQAELIELKVSLLIVTGGHTPSKEI  156 (245)
T ss_dssp             HHHHHHTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCTTCEEEEC---SCHHHHHHHHHTTCSEEEECTTCCCCHHH
T ss_pred             HHHHHHhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCCCCEEEEC---CCHHHHHHHHHcCCCEEEECCCCCCCHHH
Confidence            2222111000  00 00  0000            0001123333332   2378888999999999998854211110 


Q ss_pred             -----ccceEEEeehhhHHHHHhhhcccCCCCCccccCccccccccccccccccccC-CCceEecCCCCHHHHHHHHHhC
Q 016866          195 -----CQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANG-RPFAMLRPTASLGSALALLVQA  268 (381)
Q Consensus       195 -----~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~~~~v~~~~~-~~~~~v~~~~~l~~a~~~m~~~  268 (381)
                           ...+-.+.+..|........                     .....++++|. +++.++.+++++.+|+++|.++
T Consensus       157 ~~~a~~~~~~~i~t~~d~~~~~~~~---------------------~~~~~v~~im~~~~~~~~~~~~~~~~~~~~m~~~  215 (245)
T 3l2b_A          157 IELAKKNNITVITTPHDSFTASRLI---------------------VQSLPVDYVMTKDNLVAVSTDDLVEDVKVTMSET  215 (245)
T ss_dssp             HHHHHHHTCEEEECSSCHHHHHHHG---------------------GGGSBHHHHSBCTTCCCEETTSBHHHHHHHHHHH
T ss_pred             HHHHHHcCCeEEEeCCChHHHHHHH---------------------hcCCceeeEecCCccEEECCCCcHHHHHHHHHhc
Confidence                 00123344444443322110                     01124566798 8999999999999999999999


Q ss_pred             CCcEEEEEcCCCcEEEEEeHHHHHHHH
Q 016866          269 DVSSIPIVDDNDSLLDIYSRSDITALA  295 (381)
Q Consensus       269 ~~~~lpVvd~~g~lvGiis~~Di~~l~  295 (381)
                      +++++||+|++|+++|++|.+|+++..
T Consensus       216 ~~~~~pVvd~~~~~~Giit~~dll~~~  242 (245)
T 3l2b_A          216 RYSNYPVIDENNKVVGSIARFHLISTH  242 (245)
T ss_dssp             CCSEEEEECTTCBEEEEEECC------
T ss_pred             CCceEEEEcCCCeEEEEEEHHHhhchh
Confidence            999999999999999999999998754

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.61  E-value=3.4e-15  Score=121.70  Aligned_cols=115  Identities=9%  Similarity=0.126  Sum_probs=96.0

Q ss_pred             CCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccccccccc
Q 016866          157 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  236 (381)
Q Consensus       157 ~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~  236 (381)
                      .+++++.+++++.+|++.|.+++++++||+++  ..|   +++|++|.+|+++++.....       ...          
T Consensus        12 ~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~--~~~---~lvGivt~~dl~~~~~~~~~-------~~~----------   69 (130)
T 3hf7_A           12 NEIVGIDINDDWKSIVRQLTHSPHGRIVLYRD--SLD---DAISMLRVREAYRLMTEKKE-------FTK----------   69 (130)
T ss_dssp             GGCCEEETTSCHHHHHHHHHTCSSSEEEEESS--SGG---GEEEEEEHHHHHHHHTSSSC-------CCH----------
T ss_pred             HHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcC--CCC---cEEEEEEHHHHHHHHhccCc-------cch----------
Confidence            46889999999999999999999999999953  246   89999999999997643110       001          


Q ss_pred             cccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHh
Q 016866          237 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  296 (381)
Q Consensus       237 ~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~  296 (381)
                        ..++++| +++.++.+++++.+|++.|.+++++.+||+|++|+++|++|..|+++.+.
T Consensus        70 --~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~  126 (130)
T 3hf7_A           70 --EIMLRAA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIV  126 (130)
T ss_dssp             --HHHHHHS-BCCCEEETTCBHHHHHHHHHHHCCCEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             --hhHHHhc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEcCCCCEEEEeeHHHHHHHHh
Confidence              1334557 56789999999999999999999999999999999999999999998655

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.61  E-value=7.6e-15  Score=123.50  Aligned_cols=131  Identities=14%  Similarity=0.196  Sum_probs=102.3

Q ss_pred             CCCCCCceEeCCCCCHHHHHHHHHhCCcce-EEEEecCCCCCCccceEEEeehhhHHHHHhhhccc-CCCCCccccCccc
Q 016866          153 RPCPRPLVQAGPYDSLKEVALKILQNKVAT-VPIIHSTGPAGSCQEILYLASLSDILKCICRHFKH-SSSSLPILQQPVS  230 (381)
Q Consensus       153 ~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~-lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~-~~~~~~~~~~~i~  230 (381)
                      .+|.++++++.+++++.+|++.|.+++++. +||+|+    +   +++|++|..|+++++...+.. ... ...+.....
T Consensus        20 ~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~----~---~~vGivt~~dl~~~~~~~~~~~~~~-~~~~~~~~~   91 (157)
T 1o50_A           20 KLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARD----N---KLVGMIPVMHLLKVSGFHFFGFIPK-EELIRSSMK   91 (157)
T ss_dssp             TSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEET----T---EEEEEEEHHHHHHHHHHHHHCCCC--------CCC
T ss_pred             hcccCCCceECCCCCHHHHHHHHHhCCCCccEEEEEC----C---EEEEEEEHHHHHHHHhhhHHhhhcc-HHHHHHHHH
Confidence            478899999999999999999999999999 999975    3   699999999999976532100 000 000000000


Q ss_pred             cccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHh
Q 016866          231 SIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  296 (381)
Q Consensus       231 ~l~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~  296 (381)
                          ......++++|.+ ++++.+++++.+|++.|.+++++++||+|++|+++|+||..|+++.+.
T Consensus        92 ----~~~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dll~~l~  152 (157)
T 1o50_A           92 ----RLIAKNASEIMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALW  152 (157)
T ss_dssp             ----CCSSCBHHHHCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             ----HHcCCcHHHHcCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCCEEEEEEEHHHHHHHHH
Confidence                0122356677988 999999999999999999999999999998899999999999998665

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.61  E-value=3.2e-15  Score=122.70  Aligned_cols=118  Identities=21%  Similarity=0.387  Sum_probs=100.0

Q ss_pred             CCCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhH-HHHHhhhcccCCCCCccccCcccc
Q 016866          153 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDI-LKCICRHFKHSSSSLPILQQPVSS  231 (381)
Q Consensus       153 ~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~di-l~~l~~~~~~~~~~~~~~~~~i~~  231 (381)
                      .+|.++++++.+++++.+|++.|.+++.+.+||+|+   +|   +++|++|..|+ ++++....        ...     
T Consensus        12 ~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~~--------~~~-----   72 (138)
T 2p9m_A           12 DVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDD---EN---KVIGIVTTTDIGYNLIRDKY--------TLE-----   72 (138)
T ss_dssp             GTSBCSCCCEETTSBHHHHHHHHHHHTCCEEEEECT---TC---BEEEEEEHHHHHHHHTTTCC--------CSS-----
T ss_pred             HhhcCCceEECCCCcHHHHHHHHHHCCCcEEEEECC---CC---eEEEEEEHHHHHHHHHhhcc--------cCC-----
Confidence            368888999999999999999999999999999975   56   89999999999 87654210        011     


Q ss_pred             ccccccccccccccCCCceEecCCCCHHHHHHHHHhCC-----CcEEEEEcCCCcEEEEEeHHHHHHHHh
Q 016866          232 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQAD-----VSSIPIVDDNDSLLDIYSRSDITALAK  296 (381)
Q Consensus       232 l~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~-----~~~lpVvd~~g~lvGiis~~Di~~l~~  296 (381)
                             ..++++|.+++.++.+++++.++++.|.+++     ++.+||+|++|+++|++|..|+++.+.
T Consensus        73 -------~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~  135 (138)
T 2p9m_A           73 -------TTIGDVMTKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRTIS  135 (138)
T ss_dssp             -------CBHHHHSCSSCCCEETTSBHHHHHHHHTCC-----CCCEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             -------cCHHHHhCCCcEEECCCCCHHHHHHHHHhcCCccccccEEEEECCCCeEEEEEEHHHHHHHHH
Confidence                   2345568888999999999999999999999     999999998999999999999998654

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.61  E-value=5.5e-15  Score=123.22  Aligned_cols=122  Identities=15%  Similarity=0.168  Sum_probs=100.0

Q ss_pred             CCC--CCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccc
Q 016866          154 PCP--RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  231 (381)
Q Consensus       154 ~~~--~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~  231 (381)
                      +|.  .+++++.+++++.+|++.|.+++++.+||+|+   +|   +++|++|..|+++++......          ... 
T Consensus        20 im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~---~~---~~~Givt~~dl~~~~~~~~~~----------~~~-   82 (150)
T 3lqn_A           20 LMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDP---MY---KLHGLISTAMILDGILGLERI----------EFE-   82 (150)
T ss_dssp             HSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TC---BEEEEEEHHHHHHHTBCSSSB----------CGG-
T ss_pred             cccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECC---CC---CEEEEEEHHHHHHHHHhhccc----------chh-
Confidence            455  46899999999999999999999999999975   57   899999999999977532110          000 


Q ss_pred             ccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 016866          232 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  297 (381)
Q Consensus       232 l~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~  297 (381)
                         ......++++|.+++.++.+++++.+|++.|.++++  +||+|++|+++|++|..|+++.+..
T Consensus        83 ---~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~g~~~Giit~~dil~~l~~  143 (150)
T 3lqn_A           83 ---RLEEMKVEQVMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRRAILKLLNK  143 (150)
T ss_dssp             ---GGGGCBGGGTCBSSCCEEETTCBHHHHHHHHHHCSE--EEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             ---HHhcCCHHHHhcCCCceeCCCCCHHHHHHHHHhCCE--EEEECCCCcEEEEEEHHHHHHHHHH
Confidence               001234566788899999999999999999999987  9999999999999999999997653

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.60  E-value=8.6e-15  Score=124.29  Aligned_cols=116  Identities=18%  Similarity=0.273  Sum_probs=99.6

Q ss_pred             CCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccccccccc
Q 016866          157 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  236 (381)
Q Consensus       157 ~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~  236 (381)
                      .+++++.+++++.+|++.|.+++++.+||+|+   +|   +++|++|..|+++++......      ...          
T Consensus        35 ~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~~~------~~~----------   92 (165)
T 3fhm_A           35 RDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDA---DG---VVLGIFTERDLVKAVAGQGAA------SLQ----------   92 (165)
T ss_dssp             SCCCEECTTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHHHHHHHGGG------GGT----------
T ss_pred             CCCeEECCCCCHHHHHHHHHHcCCCEEEEEcC---CC---eEEEEEEHHHHHHHHHhcCCc------ccc----------
Confidence            36889999999999999999999999999975   57   899999999999987654211      011          


Q ss_pred             cccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 016866          237 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  297 (381)
Q Consensus       237 ~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~  297 (381)
                        ..++++|.++++++.+++++.+|++.|.+++++++||+|+ |+++|++|..|+++.+..
T Consensus        93 --~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~~~Giit~~dil~~~~~  150 (165)
T 3fhm_A           93 --QSVSVAMTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEEN-GRLAGIISIGDVVKARIG  150 (165)
T ss_dssp             --SBGGGTSBSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHTTC
T ss_pred             --CCHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHH
Confidence              2345568889999999999999999999999999999998 999999999999997653

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.60  E-value=2.6e-15  Score=125.24  Aligned_cols=115  Identities=16%  Similarity=0.229  Sum_probs=98.2

Q ss_pred             CCCCC--CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccc
Q 016866          153 RPCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVS  230 (381)
Q Consensus       153 ~~~~~--~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~  230 (381)
                      .+|.+  +++++.+++++.+|++.|.+++++.+||+|+   +|   +++|++|..|+++++.....       ...    
T Consensus        32 dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~~-------~~~----   94 (149)
T 3k2v_A           32 DIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDD---DM---NIIGIFTDGDLRRVFDTGVD-------MRD----   94 (149)
T ss_dssp             GTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECT---TC---BEEEEEEHHHHHHHHCSSSC-------CTT----
T ss_pred             HHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECC---CC---cEEEEecHHHHHHHHhcCCC-------ccc----
Confidence            37888  8999999999999999999999999999975   57   89999999999987653211       112    


Q ss_pred             cccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866          231 SIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  293 (381)
Q Consensus       231 ~l~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~  293 (381)
                              ..++++|.+++.++.+++++.+|++.|.+++++.+||+|++ +++|++|..|+++
T Consensus        95 --------~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~Giit~~dil~  148 (149)
T 3k2v_A           95 --------ASIADVMTRGGIRIRPGTLAVDALNLMQSRHITCVLVADGD-HLLGVVHMHDLLR  148 (149)
T ss_dssp             --------CBHHHHSEESCCEECTTCBHHHHHHHHHHHTCSEEEEEETT-EEEEEEEHHHHTC
T ss_pred             --------CcHHHHcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEecCC-EEEEEEEHHHhhc
Confidence                    23455588889999999999999999999999999999965 9999999999864

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.59  E-value=1.1e-14  Score=122.31  Aligned_cols=124  Identities=15%  Similarity=0.217  Sum_probs=101.2

Q ss_pred             CCCCCC--CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcc
Q 016866          152 GRPCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPV  229 (381)
Q Consensus       152 g~~~~~--~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i  229 (381)
                      +.+|..  +++++.+++++.+|++.|.+++++++||+|+   +|   +++|++|..|+++++......        .  .
T Consensus        14 ~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~---~~---~~~Givt~~dl~~~~~~~~~~--------~--~   77 (157)
T 2emq_A           14 KPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDT---SY---KLHGLISMTMMMDAILGLERI--------E--F   77 (157)
T ss_dssp             TTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECT---TC---CEEEEEEHHHHHHHSBCSSSB--------C--G
T ss_pred             HhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcC---CC---CEEEEeeHHHHHHHHhccccc--------c--h
Confidence            446775  8899999999999999999999999999975   57   899999999999866431100        0  0


Q ss_pred             ccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 016866          230 SSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  297 (381)
Q Consensus       230 ~~l~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~  297 (381)
                      .    ......+.++|.+++.++.+++++.+|++.|.++++  +||+|++|+++|++|.+|+++.+..
T Consensus        78 ~----~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~~g~~~Giit~~dil~~~~~  139 (157)
T 2emq_A           78 E----RLETMKVEEVMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRREVLKQLNK  139 (157)
T ss_dssp             G----GGGTCBGGGTCBCCCCEEETTSBHHHHHHHHHHSSE--EEEECSSSSEEEEEEHHHHHHHHHH
T ss_pred             H----HhcCCcHHHHhCCCCceecCCCcHHHHHHHHhhCCE--EEEEcCCCeEEEEEEHHHHHHHHHH
Confidence            0    011234566788899999999999999999999987  9999988999999999999987653

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.59  E-value=6.9e-15  Score=127.24  Aligned_cols=121  Identities=13%  Similarity=0.126  Sum_probs=102.9

Q ss_pred             CCCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccccc
Q 016866          153 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  232 (381)
Q Consensus       153 ~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l  232 (381)
                      .+|.++++++.+++++.+|+++|.+++++++||+++   +|   +++|++|..|+++++.....      .         
T Consensus        13 ~im~~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~---~g---~~vGivt~~dl~~~~~~~~~------~---------   71 (184)
T 1pvm_A           13 KIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDD---NG---NDVGLLSERSIIKRFIPRNK------K---------   71 (184)
T ss_dssp             GTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECT---TS---CEEEEEEHHHHHHHTGGGCC------C---------
T ss_pred             HhcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEEeHHHHHHHHhhccc------C---------
Confidence            378889999999999999999999999999999975   46   89999999999986643210      0         


Q ss_pred             cccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 016866          233 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  297 (381)
Q Consensus       233 ~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~  297 (381)
                         .....++++|.+++.++.+++++.+|++.|.+++.+.+||+|++|+++|+||..|+++.+..
T Consensus        72 ---~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~  133 (184)
T 1pvm_A           72 ---PDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSR  133 (184)
T ss_dssp             ---GGGSBGGGTSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSCH
T ss_pred             ---cccCCHHHHhCCCCcEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHh
Confidence               11124556688899999999999999999999999999999988999999999999986543

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.59  E-value=7.2e-15  Score=121.31  Aligned_cols=119  Identities=22%  Similarity=0.231  Sum_probs=97.3

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccc
Q 016866          154 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  233 (381)
Q Consensus       154 ~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~  233 (381)
                      .|.++++++.+++++.+|++.|.+++++.+||+|+   +|   +++|++|..|+++++.....      .....+     
T Consensus        16 ~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~~------~~~~~~-----   78 (144)
T 2nyc_A           16 ITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDE---NG---YLINVYEAYDVLGLIKGGIY------NDLSLS-----   78 (144)
T ss_dssp             CBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TC---BEEEEEEHHHHHHHHHTC----------CCSB-----
T ss_pred             CCCCCceEECCCCcHHHHHHHHHHcCcceeeEEcC---CC---cEEEEEcHHHHHHHhccccc------ccCCcc-----
Confidence            57788999999999999999999999999999975   47   89999999999987653210      011222     


Q ss_pred             ccccccccccccCC------CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHh
Q 016866          234 LGTWVPRIGEANGR------PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  296 (381)
Q Consensus       234 ig~~~~~v~~~~~~------~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~  296 (381)
                             ++++|.+      ++.++.+++++.+|++.|.+++++++||+|++|+++|++|.+|+++.+.
T Consensus        79 -------v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~  140 (144)
T 2nyc_A           79 -------VGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYIL  140 (144)
T ss_dssp             -------HHHHHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             -------HHHHHhcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHH
Confidence                   3344543      6889999999999999999999999999998899999999999998654

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.59  E-value=4.8e-15  Score=121.29  Aligned_cols=114  Identities=18%  Similarity=0.272  Sum_probs=96.8

Q ss_pred             CCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccccccccc
Q 016866          157 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  236 (381)
Q Consensus       157 ~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~  236 (381)
                      ++++++.+++++.+|++.|.+++++.+||+|    +|   +++|++|..|+++.+.....      .            .
T Consensus        17 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd----~~---~~~Givt~~dl~~~~~~~~~------~------------~   71 (135)
T 2rc3_A           17 HTVVAIGPDDSVFNAMQKMAADNIGALLVMK----DE---KLVGILTERDFSRKSYLLDK------P------------V   71 (135)
T ss_dssp             CCCCEECTTSBHHHHHHHHHHHTCSEEEEEE----TT---EEEEEEEHHHHHHHGGGSSS------C------------G
T ss_pred             CCcEEECCCCcHHHHHHHHHhcCCCEEEEEE----CC---EEEEEEehHHHHHHHHHcCC------C------------c
Confidence            6889999999999999999999999999996    36   89999999999874432110      0            0


Q ss_pred             cccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHh
Q 016866          237 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  296 (381)
Q Consensus       237 ~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~  296 (381)
                      ....++++|.+++.++.+++++.+|++.|.+++++.+||+| +|+++|++|.+|+++.+.
T Consensus        72 ~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dll~~~~  130 (135)
T 2rc3_A           72 KDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDAI  130 (135)
T ss_dssp             GGSBGGGTSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             ccCCHHHhccCCCeEECCCCcHHHHHHHHHHhCCCEEEEEe-CCEEEEEEEHHHHHHHHH
Confidence            12245566888999999999999999999999999999999 799999999999998655

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.59  E-value=1.2e-14  Score=119.98  Aligned_cols=119  Identities=18%  Similarity=0.265  Sum_probs=99.7

Q ss_pred             CCCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccccc
Q 016866          153 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  232 (381)
Q Consensus       153 ~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l  232 (381)
                      .+|.++++++.+++++.+|++.|.+++++.+||+|+   ++ ..+++|++|..|+++++.....        ..      
T Consensus         9 ~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~-~~~~~Givt~~dl~~~~~~~~~--------~~------   70 (141)
T 2rih_A            9 ELLKRPPVSLPETATIREVATELAKNRVGLAVLTAR---DN-PKRPVAVVSERDILRAVAQRLD--------LD------   70 (141)
T ss_dssp             GGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEET---TE-EEEEEEEEEHHHHHHHHHTTCC--------TT------
T ss_pred             HHhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcC---CC-cceeEEEEEHHHHHHHHhcCCC--------CC------
Confidence            368889999999999999999999999999999975   11 1159999999999987653210        11      


Q ss_pred             cccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHh
Q 016866          233 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  296 (381)
Q Consensus       233 ~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~  296 (381)
                            ..++++|.+++.++.++ ++.+|++.|.+++++.+||+|++|+++|++|.+|+++...
T Consensus        71 ------~~v~~~m~~~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~  127 (141)
T 2rih_A           71 ------GPAMPIANSPITVLDTD-PVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFERA  127 (141)
T ss_dssp             ------SBSGGGCBCCCEEETTS-BHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCHH
T ss_pred             ------CCHHHHcCCCCeEEcCC-CHHHHHHHHHHcCCeEEEEEcCCCcEEEEEEHHHHHHHHH
Confidence                  23455688899999999 9999999999999999999998999999999999987443

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.59  E-value=9.3e-15  Score=125.32  Aligned_cols=118  Identities=7%  Similarity=0.048  Sum_probs=99.0

Q ss_pred             CCCCCC--CCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCc
Q 016866          151 NGRPCP--RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP  228 (381)
Q Consensus       151 ~g~~~~--~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~  228 (381)
                      ++.+|.  .+++++.+++++.+|++.|.+++++++||+++  ..+   +++|++|.+|+++++....          ..+
T Consensus        38 v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~--~~~---~lvGivt~~Dl~~~~~~~~----------~~~  102 (173)
T 3ocm_A           38 IRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRG--SLD---EVVGIGRAKDLVADLITEG----------RVR  102 (173)
T ss_dssp             STTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESS--STT---SEEEEEEHHHHHHHHHHHS----------SCC
T ss_pred             HHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeC--CCC---CEEEEEEHHHHHHHHhcCC----------cch
Confidence            455785  46899999999999999999999999999965  226   7999999999999765321          111


Q ss_pred             cccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 016866          229 VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  297 (381)
Q Consensus       229 i~~l~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~  297 (381)
                      +            .  |.++++++.+++++.+|+++|.+++++.+||+|++|+++|+||..|++..+..
T Consensus       103 v------------~--~~~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde~g~lvGiIT~~Dil~~l~~  157 (173)
T 3ocm_A          103 R------------N--RLRDPIIVHESIGILRLMDTLKRSRGQLVLVADEFGAIEGLVTPIDVFEAIAG  157 (173)
T ss_dssp             G------------G--GSBCCCEECGGGCHHHHHHHHHHSTTCCEEEECTTCCEEEEECHHHHHHHHHC
T ss_pred             h------------H--hcCCCeEECCCCcHHHHHHHHHHcCCeEEEEEeCCCCEEEEEeHHHHHHHHhC
Confidence            2            2  22467899999999999999999999999999999999999999999997664

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.58  E-value=5.2e-15  Score=124.00  Aligned_cols=128  Identities=15%  Similarity=0.227  Sum_probs=105.3

Q ss_pred             hhhCcccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeecc-cCCCCcEEEEeehHHHHHHHHHhccCCCCCChhHHh
Q 016866           50 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLW-DDFKGRFVGVLSALDFILILRELGTNGSNLTEEELE  128 (381)
Q Consensus        50 l~~~~~~d~~p~s~~vi~ld~~~~v~~A~~~l~~~~i~~~pV~-d~~~~~~vGilt~~D~~~il~~~~~~~~~~~~~~l~  128 (381)
                      |...++.++|-...++++++++.|+.+|++.|.++++..+||+ |.+.++++|++|..|++..+..-.    ..      
T Consensus        17 l~~~~v~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~~~~----~~------   86 (153)
T 3oco_A           17 MNDKVASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQARIDD----KA------   86 (153)
T ss_dssp             HHHCBHHHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHHHHT----TS------
T ss_pred             cCCCEeeeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHhcCC----CC------
Confidence            3567788888554579999999999999999999999999999 655567999999999987664221    00      


Q ss_pred             hccHHHHHHHHHhhhccccCCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHH
Q 016866          129 THTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDIL  208 (381)
Q Consensus       129 ~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil  208 (381)
                        ++                   +.+| ++++++.+++++.+|++.|.+++++.+||+|+   .|   +++|++|..|++
T Consensus        87 --~v-------------------~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~---~g---~~vGivt~~dil  138 (153)
T 3oco_A           87 --KI-------------------STIM-RDIVSVPENMKVPDVMEEMSAHRVPMAIVIDE---YG---GTSGIITDKDVY  138 (153)
T ss_dssp             --BG-------------------GGTC-BCCEEEETTSBHHHHHHHHHHTTCSCEEEECT---TS---CEEEEECHHHHH
T ss_pred             --cH-------------------HHHh-CCCeEECCCCCHHHHHHHHHHcCCcEEEEEeC---CC---CEEEEeeHHHHH
Confidence              11                   1167 78999999999999999999999999999976   57   899999999999


Q ss_pred             HHHhhhc
Q 016866          209 KCICRHF  215 (381)
Q Consensus       209 ~~l~~~~  215 (381)
                      +.+....
T Consensus       139 ~~l~~~~  145 (153)
T 3oco_A          139 EELFGNL  145 (153)
T ss_dssp             HHHHC--
T ss_pred             HHHhccC
Confidence            9887543

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.57  E-value=4.4e-15  Score=121.13  Aligned_cols=117  Identities=15%  Similarity=0.253  Sum_probs=98.2

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHH-HHhhhcccCCCCCccccCccccc
Q 016866          154 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK-CICRHFKHSSSSLPILQQPVSSI  232 (381)
Q Consensus       154 ~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~-~l~~~~~~~~~~~~~~~~~i~~l  232 (381)
                      +|.++++++.+++++.+|++.|.+++.+.+||+|+   +|   +++|++|..|+++ ++.....                
T Consensus        13 im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~~~----------------   70 (133)
T 1y5h_A           13 IMNAGVTCVGEHETLTAAAQYMREHDIGALPICGD---DD---RLHGMLTDRDIVIKGLAAGLD----------------   70 (133)
T ss_dssp             HSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECG---GG---BEEEEEEHHHHHHTTGGGTCC----------------
T ss_pred             HhcCCceEeCCCCCHHHHHHHHHHhCCCeEEEECC---CC---eEEEEEeHHHHHHHHHhcCCC----------------
Confidence            46678899999999999999999999999999975   46   8999999999984 4432110                


Q ss_pred             cccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHh
Q 016866          233 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  296 (381)
Q Consensus       233 ~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~  296 (381)
                         .....++++|.+++.++.+++++.+|++.|.+++.+++||+|+ |+++|++|..|+++.+.
T Consensus        71 ---~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-g~~~Giit~~dil~~l~  130 (133)
T 1y5h_A           71 ---PNTATAGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVISE-HRLVGIVTEADIARHLP  130 (133)
T ss_dssp             ---TTTSBHHHHHTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHTCC
T ss_pred             ---ccccCHHHHhcCCCEEECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHH
Confidence               0112455668889999999999999999999999999999997 99999999999998543

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.57  E-value=5.6e-15  Score=124.33  Aligned_cols=114  Identities=14%  Similarity=0.146  Sum_probs=95.5

Q ss_pred             CCCCCCC--CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCc
Q 016866          151 NGRPCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP  228 (381)
Q Consensus       151 ~g~~~~~--~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~  228 (381)
                      ++.+|.+  +++++.+++++.+|++.|.+++++++||+++  ..+   +++|++|.+|+++++...          ... 
T Consensus        40 v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~--~~~---~lvGivt~~dl~~~~~~~----------~~~-  103 (156)
T 3oi8_A           40 VRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGE--DKD---EVLGILHAKDLLKYMFNP----------EQF-  103 (156)
T ss_dssp             GGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESS--STT---CEEEEEEGGGGGGGSSCG----------GGC-
T ss_pred             HhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcC--CCC---cEEEEEEHHHHHHHHHcC----------Ccc-
Confidence            3447875  7899999999999999999999999999965  235   799999999998854321          111 


Q ss_pred             cccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHH
Q 016866          229 VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT  292 (381)
Q Consensus       229 i~~l~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~  292 (381)
                                 .++++|.+ +.++.+++++.+|++.|.+++++.+||+|++|+++|++|..|++
T Consensus       104 -----------~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~~Givt~~Dil  155 (156)
T 3oi8_A          104 -----------HLKSILRP-AVFVPEGKSLTALLKEFREQRNHMAIVIDEYGGTSGLVTFEDII  155 (156)
T ss_dssp             -----------CHHHHCBC-CCEEETTSBHHHHHHHHHHTTCCEEEEECTTSSEEEEEEHHHHC
T ss_pred             -----------cHHHHcCC-CEEECCCCCHHHHHHHHHhcCCeEEEEECCCCCEEEEEEHHHhc
Confidence                       34455755 78999999999999999999999999999999999999999985

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.56  E-value=1.3e-14  Score=145.68  Aligned_cols=124  Identities=19%  Similarity=0.230  Sum_probs=105.6

Q ss_pred             ccccccccCCCceEecCC-CCHHHHHHHHHhCCCcEEEEEc-CCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHh
Q 016866          238 VPRIGEANGRPFAMLRPT-ASLGSALALLVQADVSSIPIVD-DNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQ  315 (381)
Q Consensus       238 ~~~v~~~~~~~~~~v~~~-~~l~~a~~~m~~~~~~~lpVvd-~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~  315 (381)
                      ..+++++|.++++++.++ +++.+|+++|.+++++++||+| ++|+++|+||.+||++.+..+...    .+.++.+   
T Consensus       383 ~~~V~diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~~~~----~~~~V~~---  455 (527)
T 3pc3_A          383 SLAIAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMNRQ----QSDPAIK---  455 (527)
T ss_dssp             TSBGGGGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHHCCC----TTSBGGG---
T ss_pred             CCcHHHhCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhccCc----CCCcHHH---
Confidence            347889999999999999 9999999999999999999999 789999999999999865532111    1345655   


Q ss_pred             cCCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCC---CCeEEEEEehHHHHHHhhc
Q 016866          316 LGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAG---SKRVEGIISLSDVFRFLLG  380 (381)
Q Consensus       316 ~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~---~~~liGiIs~~DIl~~l~~  380 (381)
                                +|.++++++.+++++.++++.|.++++  +||||++   +|+++||||..||++++..
T Consensus       456 ----------im~~~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~Dll~~l~~  511 (527)
T 3pc3_A          456 ----------ALNKRVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTFIAA  511 (527)
T ss_dssp             ----------GEETTCCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHHHHHHHHHT
T ss_pred             ----------HhcCCCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEEEEHHHHHHHHHh
Confidence                      788889999999999999999987775  7999942   3899999999999999864

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.54  E-value=6.2e-14  Score=126.96  Aligned_cols=141  Identities=12%  Similarity=0.134  Sum_probs=103.8

Q ss_pred             CCCCCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCC----------
Q 016866          151 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSS----------  220 (381)
Q Consensus       151 ~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~----------  220 (381)
                      ++.+|.++++++.+++++.+|+++|.+++++++||+|+ .+++   +++|+||..||++++.........          
T Consensus        15 v~diMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~-~~~~---~LvGiIt~~dl~~~l~~~~~~~~~~~~~~~~~~~   90 (250)
T 2d4z_A           15 VGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDT-PDTN---TLLGSIDRTEVEGLLQRRISAYRRQPAAAAEADE   90 (250)
T ss_dssp             TTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESC-TTTC---BEEEEEEHHHHHHHHHHHHHTTSSSCCCCCCBCC
T ss_pred             hHHhcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEec-CCCC---eEEEEEEHHHHHHHHHHhhhhhhhhhhhhhcccc
Confidence            44589999999999999999999999999999999974 2235   799999999999987644211000          


Q ss_pred             -----------------CCccccCc--------------------------------------------------ccc--
Q 016866          221 -----------------SLPILQQP--------------------------------------------------VSS--  231 (381)
Q Consensus       221 -----------------~~~~~~~~--------------------------------------------------i~~--  231 (381)
                                       ...+....                                                  ...  
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (250)
T 2d4z_A           91 EGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVASRFEEM  170 (250)
T ss_dssp             C---------------------------------------------------------------------------CCSC
T ss_pred             cccccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCcccccc
Confidence                             00000000                                                  000  


Q ss_pred             cc---ccccc-----ccc--c-cccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHh
Q 016866          232 IQ---LGTWV-----PRI--G-EANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  296 (381)
Q Consensus       232 l~---ig~~~-----~~v--~-~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~  296 (381)
                      +.   +..|.     ..+  . .+|.+.++++.+++++.++..+|...|++++||++ .|+++|+||+.|+++++.
T Consensus       171 i~~~~~~~~~~~~l~~~Vdl~~~~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~-~GrLVGIVTrkDl~kai~  245 (250)
T 2d4z_A          171 LTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAIE  245 (250)
T ss_dssp             CBHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             cChhhhhhHHHHhcCceeccccccccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEE-CCEEEEEEEHHHHHHHHH
Confidence            00   00110     112  1 35888899999999999999999999999999998 799999999999999776

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.54  E-value=5.8e-14  Score=129.60  Aligned_cols=121  Identities=17%  Similarity=0.245  Sum_probs=103.5

Q ss_pred             ccCCCCCCCCCCCceEeCCCCCHHHHHHHHHhC-----CcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCC
Q 016866          146 RQMDGNGRPCPRPLVQAGPYDSLKEVALKILQN-----KVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSS  220 (381)
Q Consensus       146 ~~~~~~g~~~~~~~i~v~~~~sl~~a~~~m~~~-----~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~  220 (381)
                      +....+|.+|..+++++.+++++.+|++.|.++     +++++||+|+   +|   +++|++|.+|++...         
T Consensus       132 ~~~~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~---~~---~lvGivt~~dll~~~---------  196 (278)
T 2yvy_A          132 YEEDEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDE---KG---RLKGVLSLRDLIVAD---------  196 (278)
T ss_dssp             SCTTBGGGTCBSCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECT---TC---BEEEEEEHHHHHHSC---------
T ss_pred             CCcchHHhhcCCCceEECCCCcHHHHHHHHHHccCCccceeEEEEECC---CC---CEEEEEEHHHHhcCC---------
Confidence            445567789999999999999999999999986     7899999975   56   899999999998620         


Q ss_pred             CCccccCccccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 016866          221 SLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  297 (381)
Q Consensus       221 ~~~~~~~~i~~l~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~  297 (381)
                          ...            .++++|.++++++++++++.+|++.|.+++.+.+||||++|+++|+||..|++..+.+
T Consensus       197 ----~~~------------~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivT~~Dil~~i~~  257 (278)
T 2yvy_A          197 ----PRT------------RVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEA  257 (278)
T ss_dssp             ----TTC------------BSTTTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHC--
T ss_pred             ----CCC------------cHHHHhCCCCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCCeEEEEEEHHHHHHHHHH
Confidence                112            3455588889999999999999999999999999999999999999999999986653

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.54  E-value=1.9e-14  Score=123.52  Aligned_cols=138  Identities=18%  Similarity=0.258  Sum_probs=101.1

Q ss_pred             CCCC--CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccC--CCCCccccCcc
Q 016866          154 PCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHS--SSSLPILQQPV  229 (381)
Q Consensus       154 ~~~~--~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~--~~~~~~~~~~i  229 (381)
                      +|.+  +++++.+++++.+|++.|.+++++.+||+|+   +|   +++|++|..|++++........  ....+......
T Consensus         9 im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~---~~---~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~   82 (180)
T 3sl7_A            9 FMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDD---NW---TLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTW   82 (180)
T ss_dssp             HSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TC---BEEEEEEHHHHTCC-------------------CC
T ss_pred             hcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECC---CC---eEEEEEEHHHHHhhhhhccccCCcccccccccchh
Confidence            4565  7899999999999999999999999999976   57   8999999999986432111000  00000000000


Q ss_pred             c------cccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 016866          230 S------SIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  297 (381)
Q Consensus       230 ~------~l~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~  297 (381)
                      .      .+........++++|.++++++.+++++.+|+++|.+++++++||+|++|+++|+||.+|+++.+..
T Consensus        83 ~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dil~~~~~  156 (180)
T 3sl7_A           83 KTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAALQ  156 (180)
T ss_dssp             CSHHHHHHHHHTTTTCBHHHHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             hhhHHHHHHHhccccccHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHH
Confidence            0      0000112235677898889999999999999999999999999999999999999999999996653

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.53  E-value=2.6e-14  Score=120.42  Aligned_cols=122  Identities=9%  Similarity=0.105  Sum_probs=99.3

Q ss_pred             CCCC--CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccc
Q 016866          154 PCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  231 (381)
Q Consensus       154 ~~~~--~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~  231 (381)
                      +|.+  +++++.+++++.+|++.|.+++++.+||+|+   +|   +++|++|..|+++++......          ....
T Consensus        19 im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~---~~---~lvGivt~~dl~~~~~~~~~~----------~~~~   82 (159)
T 1yav_A           19 FMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDP---SY---RLHGLIGTNMIMNSIFGLERI----------EFEK   82 (159)
T ss_dssp             HSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECT---TC---BEEEEEEHHHHHHHHBCSSSB----------CGGG
T ss_pred             HhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECC---CC---CEEEEeEHHHHHHHhhhhccc----------chhh
Confidence            4555  7889999999999999999999999999976   57   899999999999876432100          0000


Q ss_pred             ccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 016866          232 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  297 (381)
Q Consensus       232 l~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~  297 (381)
                          .....+.++|.+++.++.+++++.+|++.|.++++  +||+|++|+++|++|.+|+++.+..
T Consensus        83 ----~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~~g~~vGiit~~dil~~~~~  142 (159)
T 1yav_A           83 ----LDQITVEEVMLTDIPRLHINDPIMKGFGMVINNGF--VCVENDEQVFEGIFTRRVVLKELNK  142 (159)
T ss_dssp             ----TTTSBHHHHSBCSCCEEETTSBHHHHHHHTTTCSE--EEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             ----hccCCHHHhcCCCCceEcCCCCHHHHHHHHHhCCE--EEEEeCCCeEEEEEEHHHHHHHHHH
Confidence                01124566688899999999999999999999877  9999989999999999999997653

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.53  E-value=6.2e-14  Score=117.77  Aligned_cols=116  Identities=13%  Similarity=0.237  Sum_probs=98.6

Q ss_pred             CCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccccccccc
Q 016866          157 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  236 (381)
Q Consensus       157 ~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~  236 (381)
                      ++++++.+++++.+|++.|.+++++.+||.+    +|   +++|++|..|+++++......      .            
T Consensus        21 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~----~~---~~~Givt~~dl~~~~~~~~~~------~------------   75 (157)
T 4fry_A           21 RTIYTVTKNDFVYDAIKLMAEKGIGALLVVD----GD---DIAGIVTERDYARKVVLQERS------S------------   75 (157)
T ss_dssp             CCCCEEETTSBHHHHHHHHHHHTCSEEEEES----SS---SEEEEEEHHHHHHHSGGGTCC------S------------
T ss_pred             CCCeEECCCCcHHHHHHHHHHcCCCEEEEee----CC---EEEEEEEHHHHHHHHHhccCC------c------------
Confidence            6789999999999999999999999999963    46   899999999999976543211      0            


Q ss_pred             cccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhh
Q 016866          237 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK  298 (381)
Q Consensus       237 ~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~  298 (381)
                      ....++++|.+++.++.+++++.+|+++|.+++++++||+| +|+++|++|.+|+++.+...
T Consensus        76 ~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dil~~l~~~  136 (157)
T 4fry_A           76 KATRVEEIMTAKVRYVEPSQSTDECMALMTEHRMRHLPVLD-GGKLIGLISIGDLVKSVIAD  136 (157)
T ss_dssp             SSCBHHHHSBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTT
T ss_pred             cccCHHHHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHHH
Confidence            11245566888999999999999999999999999999999 79999999999999977643

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.53  E-value=3.1e-14  Score=140.86  Aligned_cols=117  Identities=18%  Similarity=0.269  Sum_probs=103.5

Q ss_pred             cccccccCCCceEecCCCCHHHHHHHHHhC-----CCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHH
Q 016866          239 PRIGEANGRPFAMLRPTASLGSALALLVQA-----DVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQA  313 (381)
Q Consensus       239 ~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~-----~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~  313 (381)
                      .+++++|.++++++++++++.+|++.|.++     +++++||+|++++++|+++.+|++...          .+.++.+ 
T Consensus       155 ~~v~~iM~~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~~~lvGiVt~~Dll~~~----------~~~~v~d-  223 (473)
T 2zy9_A          155 DEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVAD----------PRTRVAE-  223 (473)
T ss_dssp             TBSTTTCBSCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTTSBEEEEEEHHHHHHSC----------TTSBGGG-
T ss_pred             CCHHHhCCCCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCCCcEEEEEEHHHHhcCC----------CCCcHHH-
Confidence            356777999999999999999999999986     589999999899999999999998621          1345655 


Q ss_pred             HhcCCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 016866          314 LQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  379 (381)
Q Consensus       314 l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~  379 (381)
                                  +|.++++++++++++.++++.|.+++.+.+|||| ++|+++|+||..|+++.+.
T Consensus       224 ------------im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVD-e~g~lvGiIT~~Dil~~i~  276 (473)
T 2zy9_A          224 ------------IMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVD-EEGRLVGIVTVDDVLDVLE  276 (473)
T ss_dssp             ------------TSBSSCCCEESSSBHHHHHHHHHHHTCSEEEEEC-TTSBEEEEEEHHHHHHHHH
T ss_pred             ------------HhCCCCeEEeCCCcHHHHHHHHHhcCCcEEEEEc-CCCEEEEEEehHhhHHHHH
Confidence                        7877899999999999999999999999999999 4799999999999998874

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.53  E-value=4.7e-14  Score=130.77  Aligned_cols=121  Identities=14%  Similarity=0.186  Sum_probs=104.5

Q ss_pred             ccCCCCCCCCCCCceEeCCCCCHHHHHHHHHhC-----CcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCC
Q 016866          146 RQMDGNGRPCPRPLVQAGPYDSLKEVALKILQN-----KVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSS  220 (381)
Q Consensus       146 ~~~~~~g~~~~~~~i~v~~~~sl~~a~~~m~~~-----~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~  220 (381)
                      +....+|.+|.++++++.+++++.+|++.|.++     +++++||+|+   +|   +++|++|..|+++..         
T Consensus       134 ~~~~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~---~~---~lvGivt~~dll~~~---------  198 (286)
T 2oux_A          134 YEDETAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQ---EN---HLVGVISLRDLIVND---------  198 (286)
T ss_dssp             SCTTBHHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECT---TC---BEEEEEEHHHHTTSC---------
T ss_pred             CChHHHHHhCCCCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcC---CC---eEEEEEEHHHHHcCC---------
Confidence            445556778999999999999999999999987     8899999975   57   899999999997620         


Q ss_pred             CCccccCccccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 016866          221 SLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  297 (381)
Q Consensus       221 ~~~~~~~~i~~l~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~  297 (381)
                          ..            ..++++|.++++++.+++++.+|++.|.+++++++||+|++|+++|+||..|++..+.+
T Consensus       199 ----~~------------~~v~~im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIT~~Dil~~i~~  259 (286)
T 2oux_A          199 ----DD------------TLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVIDD  259 (286)
T ss_dssp             ----TT------------SBHHHHSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             ----CC------------CcHHHHcCCCCeeecCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHH
Confidence                11            23455688899999999999999999999999999999999999999999999997654

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.52  E-value=8.3e-14  Score=117.55  Aligned_cols=124  Identities=13%  Similarity=0.139  Sum_probs=98.0

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccc
Q 016866          154 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  233 (381)
Q Consensus       154 ~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~  233 (381)
                      +|.++++++.+++++.+|++.|.+++++++||+|++ ++|   +++|++|..|+++++.......   .....       
T Consensus        18 im~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~-~~~---~~~Givt~~dl~~~~~~~~~~~---~~~~~-------   83 (164)
T 2pfi_A           18 FMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVEST-ESQ---ILVGIVQRAQLVQALQAEPPSR---APGHQ-------   83 (164)
T ss_dssp             HCBCCCCCEETTCBHHHHHHHHHTCCCSEEEEESCT-TTC---BEEEEEEHHHHHHHHHC----------CCC-------
T ss_pred             HcCCCCeEECCCCcHHHHHHHHHhCCCCceeEEecC-CCC---EEEEEEEHHHHHHHHHhhcccc---CCccc-------
Confidence            577889999999999999999999999999999631 246   8999999999998775322110   00011       


Q ss_pred             ccccccccccccCCC------ceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 016866          234 LGTWVPRIGEANGRP------FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  297 (381)
Q Consensus       234 ig~~~~~v~~~~~~~------~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~  297 (381)
                           ..+.++|..+      +.++.+++++.+|++.|.+++++++||+| +|+++|++|.+|+++.+.+
T Consensus        84 -----~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~l~Giit~~dil~~~~~  147 (164)
T 2pfi_A           84 -----QCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS-RGRAVGCVSWVEMKKAISN  147 (164)
T ss_dssp             -----CBHHHHHHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHHHH
T ss_pred             -----chhhhhhcccccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEHHHHHHHHHh
Confidence                 1233445444      78999999999999999999999999999 7999999999999987653

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.52  E-value=4.6e-14  Score=121.69  Aligned_cols=134  Identities=10%  Similarity=0.128  Sum_probs=100.0

Q ss_pred             ceEe--CCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCC----CccccCccccc
Q 016866          159 LVQA--GPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSS----LPILQQPVSSI  232 (381)
Q Consensus       159 ~i~v--~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~----~~~~~~~i~~l  232 (381)
                      ++++  .+++++.+|++.|.+++++.+||+++ .++|   +++|++|..|+++++..........    ...+.....+.
T Consensus        25 ~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~-d~~~---~lvGiit~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (185)
T 2j9l_A           25 LLTVLTQDSMTVEDVETIISETTYSGFPVVVS-RESQ---RLVGFVLRRDLIISIENARKKQDGVVSTSIIYFTEHSPPL  100 (185)
T ss_dssp             CCCCEESSCEEHHHHHHHHHHCCCSEEEEESC-TTTC---BEEEEEEHHHHHHHHHHHHTSCSCCCTTCEEECSSSCCCC
T ss_pred             eEEEecCCCccHHHHHHHHHhcCCCceeEEEE-CCCC---eEEEEEEHHHHHHHHHhhcccCCCccccceeecccCCccc
Confidence            7788  99999999999999999999999931 1157   8999999999999876532110000    00000000000


Q ss_pred             c-ccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 016866          233 Q-LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  297 (381)
Q Consensus       233 ~-ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~  297 (381)
                      . .......++++|.+++.++.+++++.+|++.|.+++++++||+| +|+++|+||.+|+++.+..
T Consensus       101 ~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~g~~vGiit~~dll~~l~~  165 (185)
T 2j9l_A          101 PPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIAQ  165 (185)
T ss_dssp             CTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHH
T ss_pred             ccccccCccHHHhhCcCCeEeCCCCCHHHHHHHHHhCCCcEEEEEE-CCEEEEEEEHHHHHHHHHH
Confidence            0 00122356778988999999999999999999999999999999 8999999999999997653

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.50  E-value=2.5e-13  Score=134.39  Aligned_cols=121  Identities=17%  Similarity=0.245  Sum_probs=105.2

Q ss_pred             ccCCCCCCCCCCCceEeCCCCCHHHHHHHHHhC-----CcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCC
Q 016866          146 RQMDGNGRPCPRPLVQAGPYDSLKEVALKILQN-----KVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSS  220 (381)
Q Consensus       146 ~~~~~~g~~~~~~~i~v~~~~sl~~a~~~m~~~-----~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~  220 (381)
                      +....+|.+|..+++++.+++++.+|++.|.++     +++++||+|+   ++   +++|++|.+|++..          
T Consensus       152 ~~~~~v~~iM~~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~---~~---~lvGiVt~~Dll~~----------  215 (473)
T 2zy9_A          152 YEEDEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDE---KG---RLKGVLSLRDLIVA----------  215 (473)
T ss_dssp             SCTTBSTTTCBSCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECT---TS---BEEEEEEHHHHHHS----------
T ss_pred             CCCCCHHHhCCCCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECC---CC---cEEEEEEHHHHhcC----------
Confidence            566778889999999999999999999999886     5899999975   46   89999999999862          


Q ss_pred             CCccccCccccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 016866          221 SLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  297 (381)
Q Consensus       221 ~~~~~~~~i~~l~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~  297 (381)
                         ..+.            .++++|.++++++++++++.++++.|.+++...+||+|++|+++|+||..|+++...+
T Consensus       216 ---~~~~------------~v~dim~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~g~lvGiIT~~Dil~~i~~  277 (473)
T 2zy9_A          216 ---DPRT------------RVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEA  277 (473)
T ss_dssp             ---CTTS------------BGGGTSBSSCCCEESSSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred             ---CCCC------------cHHHHhCCCCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCCCEEEEEEehHhhHHHHHH
Confidence               0122            3455588899999999999999999999999999999999999999999999997653

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.49  E-value=1.1e-14  Score=149.05  Aligned_cols=139  Identities=16%  Similarity=0.073  Sum_probs=103.1

Q ss_pred             cccccccC--CCceEecCCCCHHHHHHHHH-hCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhc-ccc---------c
Q 016866          239 PRIGEANG--RPFAMLRPTASLGSALALLV-QADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYA-QIH---------L  305 (381)
Q Consensus       239 ~~v~~~~~--~~~~~v~~~~~l~~a~~~m~-~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~-~~~---------~  305 (381)
                      .+++++|.  +++.++++++++.++.+.|. +++++++||+|++|+++|+++++|+.+........ ...         .
T Consensus       453 ~~V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~  532 (632)
T 3org_A          453 MTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANGYLLGAISRKEIVDRLQHVLEDVPEPIAGHRTLVLL  532 (632)
T ss_dssp             SBHHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTTCBBCCEESHHHHTTTTTTC-----------------
T ss_pred             CcHHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecCCeEEEEEEHHHHHHHHHHHhhhcccccccccceecc
Confidence            46788999  89999999999999999999 79999999999999999999999999865432100 000         0


Q ss_pred             cccc----HHHHHhcC---------------CCCCCCc-ccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeE
Q 016866          306 DEMN----IHQALQLG---------------QDANPSL-GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRV  365 (381)
Q Consensus       306 ~~~~----v~~~l~~~---------------~~~~~~~-~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~l  365 (381)
                      ....    +.......               .++..+. ++|++++.++++++++.++++.|.+++++++||+|  +|++
T Consensus       533 ~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpVve--~G~l  610 (632)
T 3org_A          533 DAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVTE--RGKL  610 (632)
T ss_dssp             --------------------------------------CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEEEE--TTEE
T ss_pred             CHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhcCCCEEEEEE--CCEE
Confidence            0000    00000000               0011112 28999999999999999999999999999999996  5899


Q ss_pred             EEEEehHHHHHHhh
Q 016866          366 EGIISLSDVFRFLL  379 (381)
Q Consensus       366 iGiIs~~DIl~~l~  379 (381)
                      +|+||++||++++.
T Consensus       611 vGIVT~~Dll~~~~  624 (632)
T 3org_A          611 VGIVEREDVAYGYS  624 (632)
T ss_dssp             EEEEEGGGTEECCC
T ss_pred             EEEEehhhHHHHHh
Confidence            99999999987653

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.46  E-value=3.2e-13  Score=134.46  Aligned_cols=114  Identities=16%  Similarity=0.269  Sum_probs=100.4

Q ss_pred             cccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcC--CCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCC
Q 016866          243 EANGRPFAMLRPTASLGSALALLVQADVSSIPIVDD--NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDA  320 (381)
Q Consensus       243 ~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~  320 (381)
                      +.|..+++++.+++++.+++++|.+++++++||+|+  +++++|++|.+|+...   .   .   .+.++.+        
T Consensus       117 ~~m~~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~~~---~---~---~~~~V~~--------  179 (511)
T 3usb_A          117 SGVISDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMRFI---Q---D---YSIKISD--------  179 (511)
T ss_dssp             SCSSSSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHTTC---C---C---SSSBHHH--------
T ss_pred             cccccCCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHhhhh---c---c---CCCcHHH--------
Confidence            346678899999999999999999999999999998  8999999999999641   1   1   1467777        


Q ss_pred             CCCcccCCC-cceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 016866          321 NPSLGFNGQ-RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  379 (381)
Q Consensus       321 ~~~~~~m~~-~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~  379 (381)
                           +|.+ +++++++++++.++++.|.+++++.+|||| ++|+++|+||..||++.+.
T Consensus       180 -----vM~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVD-e~g~l~GiIT~~Dil~~~~  233 (511)
T 3usb_A          180 -----VMTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVD-NNGVLQGLITIKDIEKVIE  233 (511)
T ss_dssp             -----HCCCCCCCCEETTCCHHHHHHHHHHHTCSEEEEEC-TTSBEEEEEEHHHHHHHHH
T ss_pred             -----hcccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEe-CCCCEeeeccHHHHHHhhh
Confidence                 6776 899999999999999999999999999999 4799999999999999863

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.40  E-value=5.2e-12  Score=125.75  Aligned_cols=156  Identities=12%  Similarity=0.151  Sum_probs=118.8

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccc
Q 016866          154 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  233 (381)
Q Consensus       154 ~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~  233 (381)
                      .|..+++++.+++++.+|+++|.+++++++||+|+. .++   +++|++|.+|++.       .     .....      
T Consensus       118 ~m~~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g-~~~---~lvGiVt~rDl~~-------~-----~~~~~------  175 (511)
T 3usb_A          118 GVISDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNL-DER---KLVGIITNRDMRF-------I-----QDYSI------  175 (511)
T ss_dssp             CSSSSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCT-TTC---BEEEEEEHHHHTT-------C-----CCSSS------
T ss_pred             ccccCCEEECCCCCHHHHHHHHHHcCCcEEEEEecC-CCC---EEEEEEEehHhhh-------h-----ccCCC------
Confidence            577889999999999999999999999999999641 135   8999999999954       0     01122      


Q ss_pred             ccccccccccccCC-CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHH
Q 016866          234 LGTWVPRIGEANGR-PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQ  312 (381)
Q Consensus       234 ig~~~~~v~~~~~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~  312 (381)
                            .+.++|.+ ++++++++.++.+++++|.+++++.+||||++|+++|++|..|+++.......         +.+
T Consensus       176 ------~V~~vM~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~~~~~p~a---------~~D  240 (511)
T 3usb_A          176 ------KISDVMTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVIEFPNS---------AKD  240 (511)
T ss_dssp             ------BHHHHCCCCCCCCEETTCCHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHCTTC---------CBC
T ss_pred             ------cHHHhcccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHHhhhcccc---------hhh
Confidence                  34455887 89999999999999999999999999999999999999999999997653111         101


Q ss_pred             HHhcCCCCCCCcccCCCc--ceEEcCCCCHHHHHHHHHhCCCCEEEEEe
Q 016866          313 ALQLGQDANPSLGFNGQR--CQMCLRSDPLHKVMERLANPGVRRLVIVE  359 (381)
Q Consensus       313 ~l~~~~~~~~~~~~m~~~--~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd  359 (381)
                                   .+.+-  ...+.......+.++.|.+.+++.++|-.
T Consensus       241 -------------~~~rl~V~aavg~~~d~~era~aLveaGvd~I~Id~  276 (511)
T 3usb_A          241 -------------KQGRLLVGAAVGVTADAMTRIDALVKASVDAIVLDT  276 (511)
T ss_dssp             -------------TTSCBCCEEEECSSTTHHHHHHHHHHTTCSEEEEEC
T ss_pred             -------------hccceeeeeeeeeccchHHHHHHHHhhccceEEecc
Confidence                         01111  22344444556667788888998876654

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.40  E-value=1.8e-12  Score=129.13  Aligned_cols=115  Identities=19%  Similarity=0.288  Sum_probs=100.9

Q ss_pred             ccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEc--CCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCC
Q 016866          242 GEANGRPFAMLRPTASLGSALALLVQADVSSIPIVD--DNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  319 (381)
Q Consensus       242 ~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~  319 (381)
                      .++|..+++++.+++++.++++.|.+++++++||+|  ++++++|++|.+|++...      .   .+.++.+       
T Consensus        93 ~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~~~------~---~~~~v~~-------  156 (491)
T 1zfj_A           93 ENGVIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFIS------D---YNAPISE-------  156 (491)
T ss_dssp             TTTTSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCS------C---SSSBTTT-------
T ss_pred             HhcCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhhhc------c---CCCcHHH-------
Confidence            345778899999999999999999999999999999  789999999999998631      0   1244444       


Q ss_pred             CCCCcccCCC-cceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 016866          320 ANPSLGFNGQ-RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  379 (381)
Q Consensus       320 ~~~~~~~m~~-~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~  379 (381)
                            +|.+ +++++++++++.++++.|.+++++++|||| ++++++|+||..||++.+.
T Consensus       157 ------im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd-~~g~lvGivt~~Dil~~~~  210 (491)
T 1zfj_A          157 ------HMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVD-NSGRLSGLITIKDIEKVIE  210 (491)
T ss_dssp             ------SCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEEC-TTSBEEEEEEHHHHHHHHH
T ss_pred             ------HcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEc-CCCcEEEEEEHHHHHHHHh
Confidence                  7877 889999999999999999999999999999 4799999999999999875

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.38  E-value=8.3e-13  Score=132.61  Aligned_cols=121  Identities=13%  Similarity=0.137  Sum_probs=101.6

Q ss_pred             CCCCCCCCceEeCCC-CCHHHHHHHHHhCCcceEEEEe-cCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCc
Q 016866          151 NGRPCPRPLVQAGPY-DSLKEVALKILQNKVATVPIIH-STGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP  228 (381)
Q Consensus       151 ~g~~~~~~~i~v~~~-~sl~~a~~~m~~~~i~~lpVvd-~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~  228 (381)
                      ++.+|.++++++.++ +++.+|+++|.+++++++||+| +   ++   +++|++|.+||++++......       ... 
T Consensus       386 V~diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~---~g---~lvGiVt~~Dll~~l~~~~~~-------~~~-  451 (527)
T 3pc3_A          386 IAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQD---DG---SVLGVVGQETLITQIVSMNRQ-------QSD-  451 (527)
T ss_dssp             GGGGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTT---TC---CEEEEEEHHHHHHHHHHHCCC-------TTS-
T ss_pred             HHHhCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECC---CC---EEEEEEEHHHHHHHHHhccCc-------CCC-
Confidence            455899999999999 9999999999999999999997 3   56   899999999999987643211       122 


Q ss_pred             cccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCC----CcEEEEEeHHHHHHHHhhh
Q 016866          229 VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN----DSLLDIYSRSDITALAKDK  298 (381)
Q Consensus       229 i~~l~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~----g~lvGiis~~Di~~l~~~~  298 (381)
                                 .+.++|.++++++.+++++.+++++|.++++  +||||++    |+++|+||..||++.+.+.
T Consensus       452 -----------~V~~im~~~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~Dll~~l~~~  512 (527)
T 3pc3_A          452 -----------PAIKALNKRVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTFIAAG  512 (527)
T ss_dssp             -----------BGGGGEETTCCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHHHHHHHHHTC
T ss_pred             -----------cHHHHhcCCCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEEEEHHHHHHHHHhc
Confidence                       3455588999999999999999999977664  7999974    9999999999999977643

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.37  E-value=2.1e-13  Score=135.34  Aligned_cols=113  Identities=15%  Similarity=0.274  Sum_probs=85.6

Q ss_pred             cccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCC
Q 016866          243 EANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANP  322 (381)
Q Consensus       243 ~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~  322 (381)
                      +.|..+++++.+++++.+++++|.+++++++||+|++++++|+||.+|+...   .   .   .+.++.+          
T Consensus        93 ~~m~~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~~~lvGiVt~rDL~~~---~---~---~~~~v~d----------  153 (496)
T 4fxs_A           93 AGVVTHPVTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDVRFV---T---D---LTKSVAA----------  153 (496)
T ss_dssp             C--CBCCCCBCSSSBHHHHHHHHTSSCCCEEEEECSSSBEEEEEEHHHHTTC---C---C---TTSBGGG----------
T ss_pred             cccccCceEECCCCCHHHHHHHHHHcCCcEEEEEccCCEEEEEEEHHHHhhc---c---c---CCCcHHH----------
Confidence            4477789999999999999999999999999999999999999999998621   0   0   1345555          


Q ss_pred             CcccCC-C-cceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 016866          323 SLGFNG-Q-RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  378 (381)
Q Consensus       323 ~~~~m~-~-~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l  378 (381)
                         +|. . +++++++++++.++++.|.+++++.+|||| ++|+++|+||..||++..
T Consensus       154 ---iM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVD-e~G~l~GiIT~~DIl~~~  207 (496)
T 4fxs_A          154 ---VMTPKERLATVKEGATGAEVQEKMHKARVEKILVVN-DEFQLKGMITAKDFHKAE  207 (496)
T ss_dssp             ---TSEEGGGCCEEECC----CGGGTCC---CCCEEEEC-TTSBCCEEECCC-----C
T ss_pred             ---HhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEc-CCCCEEEeehHhHHHHhh
Confidence               676 3 589999999999999999999999999999 579999999999999864

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.35  E-value=8.2e-14  Score=138.80  Aligned_cols=113  Identities=14%  Similarity=0.167  Sum_probs=0.0

Q ss_pred             cCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCC---CcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCC
Q 016866          245 NGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN---DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDAN  321 (381)
Q Consensus       245 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~---g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~  321 (381)
                      |.++++++.+++++.+++++|.+++++++||+|++   |+++|+||.+|+... . .   .   .+.++.+         
T Consensus       103 M~~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g~lvGiVt~~Dl~~~-~-~---~---~~~~V~d---------  165 (503)
T 1me8_A          103 FVVSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYPID-L-T---Q---TETKVSD---------  165 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccCCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCCeEEEEEEHHHHHhh-h-c---c---ccCcHHH---------
Confidence            66688999999999999999999999999999987   899999999999864 1 0   0   1245555         


Q ss_pred             CCcccCCCc--ceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 016866          322 PSLGFNGQR--CQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  379 (381)
Q Consensus       322 ~~~~~m~~~--~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~  379 (381)
                          +|.++  ++++++++++.+|++.|.+++++.+|||| ++|+++|+||..||++.+.
T Consensus       166 ----iM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVD-e~g~lvGiIT~~Dil~~~~  220 (503)
T 1me8_A          166 ----MMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIID-DDQHLRYIVFRKDYDRSQV  220 (503)
T ss_dssp             ------------------------------------------------------------
T ss_pred             ----HhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEc-CCCeEEEEEEecHHHHhhh
Confidence                67666  99999999999999999999999999999 4799999999999998874

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.33  E-value=1.3e-13  Score=137.41  Aligned_cols=115  Identities=16%  Similarity=0.290  Sum_probs=4.9

Q ss_pred             ccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCC
Q 016866          242 GEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDAN  321 (381)
Q Consensus       242 ~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~  321 (381)
                      .++|.++++++.+++++.+|+++|.+++++.+||+|++++++|+||.+|+.....         .+.++.+         
T Consensus        98 ~~iM~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~lvGivt~~Dl~~~~~---------~~~~v~~---------  159 (494)
T 1vrd_A           98 ENGIIYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDVRFEKN---------LSKKIKD---------  159 (494)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhcCccCCeEECCCCCHHHHHHHHHHcCceEEEEEcCCCEEEEEEEHHHHHhhcC---------CCCcHHH---------
Confidence            4457888999999999999999999999999999998899999999999986310         0245555         


Q ss_pred             CCcccCCC--cceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 016866          322 PSLGFNGQ--RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  379 (381)
Q Consensus       322 ~~~~~m~~--~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~  379 (381)
                          +|.+  ++.++.+++++.++++.|.+++++++|||| ++|+++|+||..|+++.+.
T Consensus       160 ----im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd-~~g~lvGiIt~~Dll~~~~  214 (494)
T 1vrd_A          160 ----LMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVS-KDNKLVGLITIKDIMSVIE  214 (494)
T ss_dssp             ------------------------------------------------------CHHHHT
T ss_pred             ----HhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEc-CCCeEEEEEEHHHHHhhhc
Confidence                6776  899999999999999999999999999999 4799999999999999874

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.31  E-value=1.9e-13  Score=135.51  Aligned_cols=113  Identities=14%  Similarity=0.272  Sum_probs=0.9

Q ss_pred             ccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCC
Q 016866          242 GEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDAN  321 (381)
Q Consensus       242 ~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~  321 (381)
                      .+.|..+++++.+++++.+++++|.+++++++||+| +++++|+||.+|+.....         .+.++.+         
T Consensus        91 ~~~m~~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd-~g~lvGIVt~rDl~~~~~---------~~~~V~~---------  151 (490)
T 4avf_A           91 ETAIVRDPVTVTPSTKIIELLQMAREYGFSGFPVVE-QGELVGIVTGRDLRVKPN---------AGDTVAA---------  151 (490)
T ss_dssp             CC------------------------------------------------------------------------------
T ss_pred             ccCcccCceEeCCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEhHHhhhccc---------cCCcHHH---------
Confidence            345777889999999999999999999999999999 899999999999963211         0245555         


Q ss_pred             CCcccCC-C-cceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 016866          322 PSLGFNG-Q-RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  378 (381)
Q Consensus       322 ~~~~~m~-~-~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l  378 (381)
                          +|. . +++++++++++.++++.|.+++++.+|||| ++|+++|+||..||++..
T Consensus       152 ----vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVD-e~g~lvGiIT~~Dil~~~  205 (490)
T 4avf_A          152 ----IMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVD-ENFYLRGLVTFRDIEKAK  205 (490)
T ss_dssp             -----------------------------------------------------------
T ss_pred             ----HhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEc-CCCcEEEEEehHHhhhhc
Confidence                676 3 689999999999999999999999999999 579999999999999874

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.29  E-value=7.9e-11  Score=117.24  Aligned_cols=115  Identities=15%  Similarity=0.178  Sum_probs=99.2

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccc
Q 016866          154 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  233 (381)
Q Consensus       154 ~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~  233 (381)
                      +|..+++++.+++++.+|++.|.+++++++||+|+ .+++   +++|++|.+|++...            ....      
T Consensus        95 im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~-~~~~---~lvGivt~~Dl~~~~------------~~~~------  152 (491)
T 1zfj_A           95 GVIIDPFFLTPEHKVSEAEELMQRYRISGVPIVET-LANR---KLVGIITNRDMRFIS------------DYNA------  152 (491)
T ss_dssp             TTSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESC-TTTC---BEEEEEEHHHHHHCS------------CSSS------
T ss_pred             cCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEe-CCCC---EEEEEEEHHHHhhhc------------cCCC------
Confidence            68889999999999999999999999999999971 0146   899999999998620            0122      


Q ss_pred             ccccccccccccCC-CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHh
Q 016866          234 LGTWVPRIGEANGR-PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  296 (381)
Q Consensus       234 ig~~~~~v~~~~~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~  296 (381)
                            .+.++|.+ +++++++++++.++++.|.+++++.+||+|++|+++|++|..|+++...
T Consensus       153 ------~v~~im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~~~~  210 (491)
T 1zfj_A          153 ------PISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIE  210 (491)
T ss_dssp             ------BTTTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             ------cHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHHHHh
Confidence                  34555887 8899999999999999999999999999999999999999999999765

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.29  E-value=2.8e-13  Score=135.02  Aligned_cols=165  Identities=15%  Similarity=0.139  Sum_probs=22.4

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccccccc
Q 016866          155 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  234 (381)
Q Consensus       155 ~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i  234 (381)
                      |..+++++.+++++.+|+++|.+++++++||+|++...+   +++|++|.+|++..  .         .....       
T Consensus       103 M~~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g---~lvGiVt~~Dl~~~--~---------~~~~~-------  161 (503)
T 1me8_A          103 FVVSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHG---VLLGLVTQRDYPID--L---------TQTET-------  161 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccCCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCC---eEEEEEEHHHHHhh--h---------ccccC-------
Confidence            778899999999999999999999999999997521126   89999999999763  0         00122       


Q ss_pred             cccccccccccCCC--ceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHH
Q 016866          235 GTWVPRIGEANGRP--FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQ  312 (381)
Q Consensus       235 g~~~~~v~~~~~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~  312 (381)
                           .+.++|.++  ++++++++++.+|+++|.+++++.+||+|++|+++|+||.+|+++.......         ..+
T Consensus       162 -----~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~~~~~---------~~d  227 (503)
T 1me8_A          162 -----KVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYDRSQVCHNE---------LVD  227 (503)
T ss_dssp             -----------------------------------------------------------------CCC---------CBC
T ss_pred             -----cHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEecHHHHhhhcccc---------hhc
Confidence                 345558877  9999999999999999999999999999999999999999999986542211         000


Q ss_pred             HHhcCCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEE
Q 016866          313 ALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEG  367 (381)
Q Consensus       313 ~l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liG  367 (381)
                             ....  ++  ....+.. ....+.++.|.+.+++.+.| |..++...|
T Consensus       228 -------~~~~--l~--v~a~v~~-~~~~e~~~~l~e~gv~~l~V-d~~~g~~~~  269 (503)
T 1me8_A          228 -------SQKR--YL--VGAGINT-RDFRERVPALVEAGADVLCI-DSSDGFSEW  269 (503)
T ss_dssp             -------TTSC--BC--CEEEECS-SSHHHHHHHHHHHTCSEEEE-CCSCCCSHH
T ss_pred             -------cccc--cc--cccccCc-hhHHHHHHHHHhhhccceEE-ecccCcccc
Confidence                   0000  11  1123444 66677788999999987544 322344434

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=99.26  E-value=4.4e-13  Score=130.47  Aligned_cols=109  Identities=19%  Similarity=0.242  Sum_probs=0.0

Q ss_pred             cCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcC---CCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCC
Q 016866          245 NGRPFAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDAN  321 (381)
Q Consensus       245 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~  321 (381)
                      +..+++++.|+.++.+|+++|.+++++.+||+|+   +++++|++|.+|+...   .    .   +.++.+         
T Consensus       144 ~i~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf~---d----~---~~~V~e---------  204 (556)
T 4af0_A          144 FITDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQFQ---D----A---ETPIKS---------  204 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCCCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEeccccccc---c----c---ceEhhh---------
Confidence            4457899999999999999999999999999986   6799999999998541   1    1   245555         


Q ss_pred             CCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866          322 PSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  377 (381)
Q Consensus       322 ~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~  377 (381)
                          +|+.++++++.+.++.+|.+.|.++++..+|||| ++++++|+||..|+.+.
T Consensus       205 ----vMT~~lvt~~~~~~leeA~~iL~~~kieklpVVd-~~g~LvGlIT~kDi~k~  255 (556)
T 4af0_A          205 ----VMTTEVVTGSSPITLEKANSLLRETKKGKLPIVD-SNGHLVSLVARSDLLKN  255 (556)
T ss_dssp             --------------------------------------------------------
T ss_pred             ----hcccceEEecCCCCHHHHHHHHHHccccceeEEc-cCCcEEEEEEechhhhh
Confidence                8888999999999999999999999999999999 47999999999999875

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.25  E-value=5.2e-12  Score=129.31  Aligned_cols=136  Identities=12%  Similarity=0.060  Sum_probs=100.0

Q ss_pred             CCCCC--CCceEeCCCCCHHHHHHHHH-hCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCC------
Q 016866          152 GRPCP--RPLVQAGPYDSLKEVALKIL-QNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSL------  222 (381)
Q Consensus       152 g~~~~--~~~i~v~~~~sl~~a~~~m~-~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~------  222 (381)
                      +++|.  ++++++++++++.|+.+.|. +++.+++||+|+   ++   +++|++|.+|+++.+...........      
T Consensus       456 ~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~---~~---~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~  529 (632)
T 3org_A          456 REIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDA---NG---YLLGAISRKEIVDRLQHVLEDVPEPIAGHRTL  529 (632)
T ss_dssp             HHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCT---TC---BBCCEESHHHHTTTTTTC--------------
T ss_pred             HHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEec---CC---eEEEEEEHHHHHHHHHHHhhhcccccccccce
Confidence            45788  89999999999999999999 799999999975   56   89999999999987754321111000      


Q ss_pred             -----ccccCcccccc-----------------ccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCC
Q 016866          223 -----PILQQPVSSIQ-----------------LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDND  280 (381)
Q Consensus       223 -----~~~~~~i~~l~-----------------ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g  280 (381)
                           ..+.+.+..+.                 .-....++.++|+++++++++++++.+++++|.+++++++||+ ++|
T Consensus       530 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpVv-e~G  608 (632)
T 3org_A          530 VLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVT-ERG  608 (632)
T ss_dssp             -----------------------------------------CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEEE-ETT
T ss_pred             eccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhcCCCEEEEE-ECC
Confidence                 00001111110                 0011123778999999999999999999999999999999999 689


Q ss_pred             cEEEEEeHHHHHHH
Q 016866          281 SLLDIYSRSDITAL  294 (381)
Q Consensus       281 ~lvGiis~~Di~~l  294 (381)
                      +++|+||++|+++.
T Consensus       609 ~lvGIVT~~Dll~~  622 (632)
T 3org_A          609 KLVGIVEREDVAYG  622 (632)
T ss_dssp             EEEEEEEGGGTEEC
T ss_pred             EEEEEEehhhHHHH
Confidence            99999999999774

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.24  E-value=4e-12  Score=126.11  Aligned_cols=113  Identities=15%  Similarity=0.170  Sum_probs=84.3

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccc
Q 016866          154 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  233 (381)
Q Consensus       154 ~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~  233 (381)
                      .|..+++++++++++.+|+++|.+++++++||+|+   ++   +++|++|.+|++.      .      .....+     
T Consensus        94 ~m~~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~---~~---~lvGiVt~rDL~~------~------~~~~~~-----  150 (496)
T 4fxs_A           94 GVVTHPVTVRPEQTIADVMELTHYHGFAGFPVVTE---NN---ELVGIITGRDVRF------V------TDLTKS-----  150 (496)
T ss_dssp             --CBCCCCBCSSSBHHHHHHHHTSSCCCEEEEECS---SS---BEEEEEEHHHHTT------C------CCTTSB-----
T ss_pred             ccccCceEECCCCCHHHHHHHHHHcCCcEEEEEcc---CC---EEEEEEEHHHHhh------c------ccCCCc-----
Confidence            67889999999999999999999999999999975   46   8999999999962      0      111222     


Q ss_pred             ccccccccccccC-C-CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHh
Q 016866          234 LGTWVPRIGEANG-R-PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  296 (381)
Q Consensus       234 ig~~~~~v~~~~~-~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~  296 (381)
                             +.++|. . ++++++++.++.+++++|.++++..+||||++|+++|+||..|+++...
T Consensus       151 -------v~diM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl~~~~  208 (496)
T 4fxs_A          151 -------VAAVMTPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMITAKDFHKAES  208 (496)
T ss_dssp             -------GGGTSEEGGGCCEEECC----CGGGTCC---CCCEEEECTTSBCCEEECCC-----CC
T ss_pred             -------HHHHhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEeehHhHHHHhhc
Confidence                   345577 3 5899999999999999999999999999999999999999999998543

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=99.21  E-value=2.5e-12  Score=125.26  Aligned_cols=114  Identities=21%  Similarity=0.243  Sum_probs=0.0

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccc
Q 016866          154 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  233 (381)
Q Consensus       154 ~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~  233 (381)
                      .|-.+++++.|+.++.||+++|.+++++.+||+++...++   +++||+|.+|+. |-            ..+.+     
T Consensus       143 g~i~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~---kLvGIvT~RD~r-f~------------d~~~~-----  201 (556)
T 4af0_A          143 GFITDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDS---KLLGIVTGRDVQ-FQ------------DAETP-----  201 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CccCCCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCC---EEEEEEeccccc-cc------------ccceE-----
Confidence            3566789999999999999999999999999997644456   899999999973 21            11223     


Q ss_pred             ccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHH
Q 016866          234 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  295 (381)
Q Consensus       234 ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~  295 (381)
                             +.++|+++++++....++.+|.++|.++++..+||||++|+++|+||++|+.+..
T Consensus       202 -------V~evMT~~lvt~~~~~~leeA~~iL~~~kieklpVVd~~g~LvGlIT~kDi~k~~  256 (556)
T 4af0_A          202 -------IKSVMTTEVVTGSSPITLEKANSLLRETKKGKLPIVDSNGHLVSLVARSDLLKNQ  256 (556)
T ss_dssp             --------------------------------------------------------------
T ss_pred             -------hhhhcccceEEecCCCCHHHHHHHHHHccccceeEEccCCcEEEEEEechhhhhh
Confidence                   4455999999999999999999999999999999999999999999999998854

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.19  E-value=6e-12  Score=125.40  Aligned_cols=113  Identities=19%  Similarity=0.277  Sum_probs=4.6

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccc
Q 016866          154 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  233 (381)
Q Consensus       154 ~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~  233 (381)
                      +|.++++++.+++++.+|++.|.+++++.+||+|+   ++   +++|++|..|+++.-            ...       
T Consensus       100 iM~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~---~~---~lvGivt~~Dl~~~~------------~~~-------  154 (494)
T 1vrd_A          100 GIIYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDE---EG---RLVGLLTNRDVRFEK------------NLS-------  154 (494)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCccCCeEECCCCCHHHHHHHHHHcCceEEEEEcC---CC---EEEEEEEHHHHHhhc------------CCC-------
Confidence            57889999999999999999999999999999975   46   899999999997510            011       


Q ss_pred             ccccccccccccCC--CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHh
Q 016866          234 LGTWVPRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  296 (381)
Q Consensus       234 ig~~~~~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~  296 (381)
                           ..+.++|.+  +++++.+++++.+++++|.++++..+||||++|+++|++|..|+++...
T Consensus       155 -----~~v~~im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~  214 (494)
T 1vrd_A          155 -----KKIKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVIE  214 (494)
T ss_dssp             -----------------------------------------------------------CHHHHT
T ss_pred             -----CcHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHhhhc
Confidence                 234556887  8999999999999999999999999999999999999999999998765

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.19  E-value=9.2e-12  Score=123.41  Aligned_cols=112  Identities=17%  Similarity=0.206  Sum_probs=0.0

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccc
Q 016866          154 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  233 (381)
Q Consensus       154 ~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~  233 (381)
                      .|..+++++.+++++.+|+++|.+++++++||+|    ++   +++|++|.+|+...            .....      
T Consensus        93 ~m~~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd----~g---~lvGIVt~rDl~~~------------~~~~~------  147 (490)
T 4avf_A           93 AIVRDPVTVTPSTKIIELLQMAREYGFSGFPVVE----QG---ELVGIVTGRDLRVK------------PNAGD------  147 (490)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CcccCceEeCCCCcHHHHHHHHHHhCCCEEEEEE----CC---EEEEEEEhHHhhhc------------cccCC------
Confidence            5778899999999999999999999999999996    35   89999999999531            11122      


Q ss_pred             ccccccccccccC-C-CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHh
Q 016866          234 LGTWVPRIGEANG-R-PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  296 (381)
Q Consensus       234 ig~~~~~v~~~~~-~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~  296 (381)
                            .+.++|. + +++++++++++.+++++|.+++++.+||||++|+++|+||..|+++...
T Consensus       148 ------~V~~vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~  206 (490)
T 4avf_A          148 ------TVAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDIEKAKT  206 (490)
T ss_dssp             -----------------------------------------------------------------
T ss_pred             ------cHHHHhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHhhhhcc
Confidence                  3445587 4 6899999999999999999999999999999999999999999998654

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=99.14  E-value=4.3e-13  Score=134.24  Aligned_cols=117  Identities=20%  Similarity=0.233  Sum_probs=67.8

Q ss_pred             cccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcC---CCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcC
Q 016866          241 IGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLG  317 (381)
Q Consensus       241 v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~  317 (381)
                      +.++|.++++++.+++++.+|+++|.+++++.+||+|+   +++++|+||.+|+......       ..+.++.+     
T Consensus       110 ~~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~~~-------~~~~~v~~-----  177 (514)
T 1jcn_A          110 FEQGFITDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLAEK-------DHTTLLSE-----  177 (514)
T ss_dssp             CCTTSCSSCCCCCC-----------------CEESCC--------CCEECTTTTC-------------------------
T ss_pred             hhhccccCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhhhc-------cCCCCHHH-----
Confidence            34557778899999999999999999999999999997   5899999999998763210       01234444     


Q ss_pred             CCCCCCcccCCC--cceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 016866          318 QDANPSLGFNGQ--RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  378 (381)
Q Consensus       318 ~~~~~~~~~m~~--~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l  378 (381)
                              +|.+  ++.++.+++++.++++.|.+++++++|||| ++|+++|+||.+||++.+
T Consensus       178 --------vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd-~~g~lvGiIt~~Dll~~~  231 (514)
T 1jcn_A          178 --------VMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVN-DCDELVAIIARTDLKKNR  231 (514)
T ss_dssp             -----------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEES-SSSCCC----CCCCSSCC
T ss_pred             --------HhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEEC-CCCeEEEEEEHHHHHHHh
Confidence                    6766  899999999999999999999999999999 479999999999998765

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=99.12  E-value=6.1e-12  Score=124.96  Aligned_cols=109  Identities=17%  Similarity=0.325  Sum_probs=0.0

Q ss_pred             ccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCC
Q 016866          244 ANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPS  323 (381)
Q Consensus       244 ~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~  323 (381)
                      .|..+++++.+++++.+++++|.+++++++||+|+ ++++|+++.+|+..  .      .   +.++.+           
T Consensus        98 ~m~~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~-~~lvGivt~~Dl~~--~------~---~~~v~~-----------  154 (486)
T 2cu0_A           98 LIVEDVITIAPDETVDFALFLMEKHGIDGLPVVED-EKVVGIITKKDIAA--R------E---GKLVKE-----------  154 (486)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccCceEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHhcc--C------C---CCCHHH-----------
Confidence            36668889999999999999999999999999997 99999999999875  1      0   245555           


Q ss_pred             cccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 016866          324 LGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  378 (381)
Q Consensus       324 ~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l  378 (381)
                        +|.++++++++++++.++++.|.+++++.+|||| ++|+++|+||..||++.+
T Consensus       155 --im~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd-e~g~lvGiiT~~Dil~~~  206 (486)
T 2cu0_A          155 --LMTKEVITVPESIEVEEALKIMIENRIDRLPVVD-ERGKLVGLITMSDLVARK  206 (486)
T ss_dssp             -------------------------------------------------------
T ss_pred             --HccCCCeEECCcCcHHHHHHHHHHcCCCEEEEEe-cCCeEEEEEEHHHHHHhh
Confidence              6766889999999999999999999999999999 479999999999999875

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=99.04  E-value=4.1e-10  Score=80.98  Aligned_cols=69  Identities=13%  Similarity=0.241  Sum_probs=54.0

Q ss_pred             ceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccCC
Q 016866          249 FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNG  328 (381)
Q Consensus       249 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m~  328 (381)
                      ++++.+++++.+|+++|.+++++++||+| +|+++|++|.+|+++.+.....   ...+.++++             +|+
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d-~~~lvGIvT~~Di~~~~~~~~~---~~~~~~V~~-------------iMt   64 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVME-GDEILGVVTERDILDKVVAKGK---NPKEVKVEE-------------IMT   64 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHTTTTTC---CGGGCBGGG-------------TCE
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHhcCC---CcccCCHHH-------------hcC
Confidence            57899999999999999999999999998 6899999999999864332211   111356666             787


Q ss_pred             CcceEE
Q 016866          329 QRCQMC  334 (381)
Q Consensus       329 ~~~~~v  334 (381)
                      ++++|+
T Consensus        65 ~~~iTV   70 (70)
T 3ghd_A           65 KNPVKI   70 (70)
T ss_dssp             ECTTCC
T ss_pred             CCCeEC
Confidence            777653

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=98.99  E-value=3.2e-11  Score=120.62  Aligned_cols=117  Identities=17%  Similarity=0.204  Sum_probs=67.1

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccc
Q 016866          154 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  233 (381)
Q Consensus       154 ~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~  233 (381)
                      +|.++++++.+++++.+|+++|.+++++.+||+|++..++   +++|++|.+|+.....          ....       
T Consensus       113 im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~---~lvGiVt~~Dl~~~~~----------~~~~-------  172 (514)
T 1jcn_A          113 GFITDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGS---KLVGIVTSRDIDFLAE----------KDHT-------  172 (514)
T ss_dssp             TSCSSCCCCCC-----------------CEESCC-----------CCEECTTTTC-------------------------
T ss_pred             ccccCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCC---EEEEEEEHHHHHhhhh----------ccCC-------
Confidence            6778899999999999999999999999999996421136   8999999999965210          0011       


Q ss_pred             ccccccccccccCC--CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHH
Q 016866          234 LGTWVPRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  295 (381)
Q Consensus       234 ig~~~~~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~  295 (381)
                           ..+.++|.+  +++++.+++++.+++++|.+++++.+||||++|+++|++|++|+++..
T Consensus       173 -----~~v~~vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~  231 (514)
T 1jcn_A          173 -----TLLSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLKKNR  231 (514)
T ss_dssp             -------------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC----CCCCSSCC
T ss_pred             -----CCHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEEEHHHHHHHh
Confidence                 234555887  899999999999999999999999999999999999999999998744

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=98.98  E-value=8.5e-11  Score=116.70  Aligned_cols=160  Identities=16%  Similarity=0.259  Sum_probs=22.3

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccc
Q 016866          154 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  233 (381)
Q Consensus       154 ~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~  233 (381)
                      .|..+++++.+++++.++++.|.+++++++||+++    +   +++|+++.+|++.   .           ...      
T Consensus        98 ~m~~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~----~---~lvGivt~~Dl~~---~-----------~~~------  150 (486)
T 2cu0_A           98 LIVEDVITIAPDETVDFALFLMEKHGIDGLPVVED----E---KVVGIITKKDIAA---R-----------EGK------  150 (486)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccCceEECCCCCHHHHHHHHHHcCCcEEEEEEC----C---EEEEEEEHHHhcc---C-----------CCC------
Confidence            57788999999999999999999999999999964    5   7999999999864   0           112      


Q ss_pred             ccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHH
Q 016866          234 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQA  313 (381)
Q Consensus       234 ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~  313 (381)
                            .+.++|.++++++++++++.++++.|.+++++.+||+|++|+++|++|.+|+++......         ...+ 
T Consensus       151 ------~v~~im~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~g~lvGiiT~~Dil~~~~~~~---------~~~~-  214 (486)
T 2cu0_A          151 ------LVKELMTKEVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLVARKKYKN---------AVRD-  214 (486)
T ss_dssp             --------------------------------------------------------------CCTT---------CCBC-
T ss_pred             ------CHHHHccCCCeEECCcCcHHHHHHHHHHcCCCEEEEEecCCeEEEEEEHHHHHHhhhccc---------cccc-
Confidence                  234458878899999999999999999999999999999999999999999998654210         0000 


Q ss_pred             HhcCCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEE
Q 016866          314 LQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGII  369 (381)
Q Consensus       314 l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiI  369 (381)
                            ....  ++-  -..+...+  .+.+..|...+++.+ |++...|...+++
T Consensus       215 ------~~g~--~~v--~~~~~~~~--~~~a~~l~~~gvd~l-vvdta~G~~~~~L  257 (486)
T 2cu0_A          215 ------ENGE--LLV--AAAVSPFD--IKRAIELDKAGVDVI-VVDTAHAHNLKAI  257 (486)
T ss_dssp             ------TTSC--BCC--EEEECTTC--HHHHHHHHHTTCSEE-EEECSCCCCHHHH
T ss_pred             ------cCCc--eee--cceechhh--HHHHHHHHHhcCCce-EEEecCCcEeehh
Confidence                  0001  110  01233333  566778999999876 6663345544443

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=98.84  E-value=6.9e-09  Score=74.49  Aligned_cols=47  Identities=26%  Similarity=0.378  Sum_probs=42.7

Q ss_pred             ceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHh
Q 016866          159 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCIC  212 (381)
Q Consensus       159 ~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~  212 (381)
                      ++++.|++++.+|+++|.+++++++||+|+    |   +++||+|.+|+++.+.
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~----~---~lvGIvT~~Di~~~~~   48 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEG----D---EILGVVTERDILDKVV   48 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEET----T---EEEEEEEHHHHHHHTT
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEEC----C---EEEEEEEHHHHHHHHH
Confidence            689999999999999999999999999964    6   8999999999987554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	381
d2ooxe1	179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	4e-15
d2ooxe1	179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	1e-05
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	3e-13
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	1e-09
d2ooxe2	153	d.37.1.1 (E:182-334) Uncharacterized protein C1556	1e-09
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	2e-09
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	0.004
d2o16a3	139	d.37.1.1 (A:20-158) Hypothetical protein VC0737 {V	3e-09
d2o16a3	139	d.37.1.1 (A:20-158) Hypothetical protein VC0737 {V	0.002
d2v8qe1	145	d.37.1.1 (E:182-326) 5'-AMP-activated protein kina	5e-09
d2v8qe1	145	d.37.1.1 (E:182-326) 5'-AMP-activated protein kina	0.001
d2yzia1	132	d.37.1.1 (A:4-135) Uncharacterized protein PH0107	1e-08
d2rc3a1	127	d.37.1.1 (A:23-149) Uncharacterized protein NE2398	3e-08
d2rc3a1	127	d.37.1.1 (A:23-149) Uncharacterized protein NE2398	8e-05
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	6e-08
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	7e-04
d1y5ha3	123	d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {M	1e-07
d2j9la1	169	d.37.1.1 (A:578-746) Chloride channel protein 5, C	8e-07
d1pbja3	120	d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {A	3e-06
d2d4za3	160	d.37.1.1 (A:527-606,A:691-770) Chloride channel pr	1e-05
d1pvma4	142	d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Ar	2e-05
d2ef7a1	127	d.37.1.1 (A:1-127) Uncharacterized protein ST2348	1e-04
d1o50a3	145	d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Th	4e-04
d1o50a3	145	d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Th	0.003
d1vr9a3	121	d.37.1.1 (A:1-121) Hypothetical protein TM0892, CB	6e-04
d1jr1a4	120	d.37.1.1 (A:113-232) Type II inosine monophosphate	8e-04
d1jr1a4	120	d.37.1.1 (A:113-232) Type II inosine monophosphate	0.001

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 70.8 bits (172), Expect = 4e-15
 Identities = 42/175 (24%), Positives = 80/175 (45%), Gaps = 10/175 (5%)

Query: 45  RISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLS 104
            I +F+ + T Y++LP S ++   DV L VK +  +L    +   PLWD    +F G+L+
Sbjct: 12  EIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLT 71

Query: 105 ALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGP 164
             DF+ +++    + S               ++ K +L   R+++      P   +   P
Sbjct: 72  MADFVNVIKYYYQSSSFPEAI---------AEIDKFRLLGLREVERKIGAIPPETIYVHP 122

Query: 165 YDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSS 219
             SL +  L + +++   +P+I   G  GS   I+ + +   ILK I  + K ++
Sbjct: 123 MHSLMDACLAMSKSRARRIPLIDVDGETGSEM-IVSVLTQYRILKFISMNCKETA 176

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 43.1 bits (100), Expect = 1e-05
 Identities = 17/135 (12%), Positives = 51/135 (37%), Gaps = 7/135 (5%)

Query: 251 MLRPTASLGSALALLVQADVSSIPIV-DDNDSLLDIYSRSD-ITALAKDKAYAQIHLDEM 308
           +   T  + ++L+LL   ++ S P+   + +    + + +D +  +      +       
Sbjct: 34  VFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIA 93

Query: 309 NIHQALQLG-QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVE----AGSK 363
            I +   LG ++    +G              L      ++    RR+ +++     GS+
Sbjct: 94  EIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSE 153

Query: 364 RVEGIISLSDVFRFL 378
            +  +++   + +F+
Sbjct: 154 MIVSVLTQYRILKFI 168

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 64.5 bits (156), Expect = 3e-13
 Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 18/166 (10%)

Query: 46  ISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSA 105
            ++F+ +H  Y+L+P S K+   D +L VK+AF  L   G+   PLWD  K  FVG+L+ 
Sbjct: 6   YTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTI 65

Query: 106 LDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPY 165
            DFI IL     +      E  E    +  +V                   +PLV   P 
Sbjct: 66  TDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSF-------------KPLVCISPN 112

Query: 166 DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI 211
            SL +    +++NK+  +P+I            LY+ +   ILK +
Sbjct: 113 ASLFDAVSSLIRNKIHRLPVIDPES-----GNTLYILTHKRILKFL 153

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.4 bits (130), Expect = 1e-09
 Identities = 18/129 (13%), Positives = 46/129 (35%), Gaps = 3/129 (2%)

Query: 251 MLRPTASLGSALALLVQADVSSIPIV-DDNDSLLDIYSRSDITALAKDKAYAQIHLDEMN 309
           +   +  +  A   LV   V + P+      S + + + +D   +     Y +  L ++ 
Sbjct: 27  VFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDF--INILHRYYKSALVQIY 84

Query: 310 IHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGII 369
             +  ++       L  + +       +  L   +  L    + RL +++  S     I+
Sbjct: 85  ELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYIL 144

Query: 370 SLSDVFRFL 378
           +   + +FL
Sbjct: 145 THKRILKFL 153

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 153

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 54.6 bits (130), Expect = 1e-09
 Identities = 32/153 (20%), Positives = 67/153 (43%), Gaps = 20/153 (13%)

Query: 228 PVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYS 287
           P++ + +GTW            A       +   + +L + ++S++PIV+   +LL++Y 
Sbjct: 2   PLNQMTIGTW---------SNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYE 52

Query: 288 RSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERL 347
             D+  L +D  Y+ + L                     N      C  +D L  + + +
Sbjct: 53  SVDVMHLIQDGDYSNLDLSVGEALLKRP----------ANFDGVHTCRATDRLDGIFDAI 102

Query: 348 ANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 380
            +  V RL +V+    ++EGI+SL+D+  +++ 
Sbjct: 103 KHSRVHRLFVVDEN-LKLEGILSLADILNYIIY 134

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.6 bits (128), Expect = 2e-09
 Identities = 33/156 (21%), Positives = 66/156 (42%), Gaps = 20/156 (12%)

Query: 224 ILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLL 283
            L+ P+  + + T                + T  +   + +L Q  VSS+PI+D+N  L+
Sbjct: 3   FLKIPIGDLNIITQ---------DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLI 53

Query: 284 DIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKV 343
           ++Y   D+  L K   Y  + L                     + +    C ++D L  +
Sbjct: 54  NVYEAYDVLGLIKGGIYNDLSLSVGEALMRRS----------DDFEGVYTCTKNDKLSTI 103

Query: 344 MERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 379
           M+ +    V R  +V+    R+ G+++LSD+ +++L
Sbjct: 104 MDNIRKARVHRFFVVDDV-GRLVGVLTLSDILKYIL 138

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.1 bits (80), Expect = 0.004
 Identities = 20/135 (14%), Positives = 39/135 (28%), Gaps = 18/135 (13%)

Query: 157 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 216
             +        + +V   + Q +V++VPII   G   +  E   +  L            
Sbjct: 17  DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLS 76

Query: 217 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 276
              + +                                   L + +  + +A V    +V
Sbjct: 77  VGEALMRRSDDFEGVY------------------TCTKNDKLSTIMDNIRKARVHRFFVV 118

Query: 277 DDNDSLLDIYSRSDI 291
           DD   L+ + + SDI
Sbjct: 119 DDVGRLVGVLTLSDI 133

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} Length = 139

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

 Score = 52.6 bits (125), Expect = 3e-09
 Identities = 28/133 (21%), Positives = 43/133 (32%), Gaps = 11/133 (8%)

Query: 247 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLD 306
           R    L  T +L  A  L+   D+  +PIVD N  LL I S+ D+ A  +         D
Sbjct: 10  RHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGD 69

Query: 307 EMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVE 366
            +     L                         L +    +    +  L +V      + 
Sbjct: 70  SLAFETPLFE---------VMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAKD--VLV 118

Query: 367 GIISLSDVFRFLL 379
           GII+ SD     +
Sbjct: 119 GIITDSDFVTIAI 131

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} Length = 139

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

 Score = 36.0 bits (82), Expect = 0.002
 Identities = 20/135 (14%), Positives = 45/135 (33%), Gaps = 18/135 (13%)

Query: 157 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 216
           R         +L +    +    +  VPI+ +       +++L + S  D+L       +
Sbjct: 10  RHPHTLLRTHTLNDAKHLMEALDIRHVPIVDA------NKKLLGIVSQRDLLAAQESSLQ 63

Query: 217 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 276
            S+    +  +               E        + P A L  +   + +  +  +P+V
Sbjct: 64  RSAQGDSLAFETPLF-----------EVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVV 112

Query: 277 DDNDSLLDIYSRSDI 291
             +  L+ I + SD 
Sbjct: 113 AKD-VLVGIITDSDF 126

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.5 bits (125), Expect = 5e-09
 Identities = 43/155 (27%), Positives = 74/155 (47%), Gaps = 20/155 (12%)

Query: 225 LQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLD 284
           + + +  +Q+GT+            AM+R T  +  AL + VQ  VS++P+VD+   ++D
Sbjct: 7   MSKSLEELQIGTY---------ANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVD 57

Query: 285 IYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVM 344
           IYS+ D+  LA +K Y  + +      Q      +              C   + L  ++
Sbjct: 58  IYSKFDVINLAAEKTYNNLDVSVTKALQHRSHYFEGVLK----------CYLHETLEAII 107

Query: 345 ERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 379
            RL    V RLV+V+     V+GI+SLSD+ + L+
Sbjct: 108 NRLVEAEVHRLVVVDEH-DVVKGIVSLSDILQALV 141

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.7 bits (84), Expect = 0.001
 Identities = 20/135 (14%), Positives = 46/135 (34%), Gaps = 18/135 (13%)

Query: 157 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 216
             +        +       +Q++V+ +P++   G       ++ + S  D++        
Sbjct: 20  ANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKG------RVVDIYSKFDVINLAAEKTY 73

Query: 217 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 276
           ++            S                         +L + +  LV+A+V  + +V
Sbjct: 74  NNLDVSVTKALQHRSHYF------------EGVLKCYLHETLEAIINRLVEAEVHRLVVV 121

Query: 277 DDNDSLLDIYSRSDI 291
           D++D +  I S SDI
Sbjct: 122 DEHDVVKGIVSLSDI 136

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 50.9 bits (121), Expect = 1e-08
 Identities = 24/133 (18%), Positives = 58/133 (43%), Gaps = 19/133 (14%)

Query: 247 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLD 306
           +    ++P+ S+  A  L+++ DV S+ +++D+ +++  +++SDI               
Sbjct: 13  KKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYDIPV 72

Query: 307 EMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVE 366
           E  + +                        + PL +V+ ++A   ++ ++I E G  ++ 
Sbjct: 73  ERIMTR-----------------NLITANVNTPLGEVLRKMAEHRIKHILIEEEG--KIV 113

Query: 367 GIISLSDVFRFLL 379
           GI +LSD+     
Sbjct: 114 GIFTLSDLLEASR 126

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

 Score = 49.8 bits (118), Expect = 3e-08
 Identities = 18/142 (12%), Positives = 48/142 (33%), Gaps = 19/142 (13%)

Query: 238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD 297
           V  + +  G     + P  S+ +A+  +   ++ ++ ++ D   +  +  R         
Sbjct: 4   VKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTER--------- 54

Query: 298 KAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVI 357
                   D       L              ++      ++     M  +    VR L +
Sbjct: 55  --------DFSRKSYLLDKPVKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPV 106

Query: 358 VEAGSKRVEGIISLSDVFRFLL 379
           ++ G  +V G++S+ D+ +  +
Sbjct: 107 LDDG--KVIGLLSIGDLVKDAI 126

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

 Score = 39.7 bits (92), Expect = 8e-05
 Identities = 21/139 (15%), Positives = 45/139 (32%), Gaps = 26/139 (18%)

Query: 153 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCIC 212
           +     +V  GP DS+     K+  + +  + ++      G   E        D  +   
Sbjct: 9   QEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTE-------RDFSRKSY 61

Query: 213 RHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSS 272
              K                       ++ E   R  A +    +    +AL+ +  V  
Sbjct: 62  LLDKPV------------------KDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRH 103

Query: 273 IPIVDDNDSLLDIYSRSDI 291
           +P++DD   ++ + S  D+
Sbjct: 104 LPVLDDGK-VIGLLSIGDL 121

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 49.2 bits (116), Expect = 6e-08
 Identities = 25/153 (16%), Positives = 50/153 (32%), Gaps = 14/153 (9%)

Query: 240 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDND------------SLLDIYS 287
            I     R  +++     L +AL  L+ ++  ++P+VD                  +I  
Sbjct: 5   EIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVR 64

Query: 288 RSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHK-VMER 346
               T LA       I      +       Q  N  +     R  +          V  +
Sbjct: 65  IMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALK 124

Query: 347 LANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 379
           +A   + +L ++  G   + G+I   D+ + L+
Sbjct: 125 MAKYSIEQLPVIR-GEGDLIGLIRDFDLLKVLV 156

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 37.7 bits (86), Expect = 7e-04
 Identities = 14/140 (10%), Positives = 37/140 (26%), Gaps = 5/140 (3%)

Query: 157 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGP-----AGSCQEILYLASLSDILKCI 211
           R +        LK     +L +    +P++ S G        +                +
Sbjct: 12  RYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTEL 71

Query: 212 CRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVS 271
               +                +L      + E   R   +  P  ++      + +  + 
Sbjct: 72  AASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIE 131

Query: 272 SIPIVDDNDSLLDIYSRSDI 291
            +P++     L+ +    D+
Sbjct: 132 QLPVIRGEGDLIGLIRDFDL 151

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 48.0 bits (113), Expect = 1e-07
 Identities = 19/132 (14%), Positives = 46/132 (34%), Gaps = 18/132 (13%)

Query: 247 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLD 306
                +    +L +A   + + D+ ++PI  D+D L  + +  DI               
Sbjct: 9   AGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTAT 68

Query: 307 EMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVE 366
              + +                        +  + +++  +    VRR+ ++     R+ 
Sbjct: 69  AGELAR----------------DSIYYVDANASIQEMLNVMEEHQVRRVPVISEH--RLV 110

Query: 367 GIISLSDVFRFL 378
           GI++ +D+ R L
Sbjct: 111 GIVTEADIARHL 122

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (109), Expect = 8e-07
 Identities = 20/137 (14%), Positives = 51/137 (37%), Gaps = 11/137 (8%)

Query: 251 MLRPTASLGSALALLVQADVSSIPIV--DDNDSLLDIYSRSDITALAKDKAYAQIHLDEM 308
           + + + ++     ++ +   S  P+V   ++  L+    R D+    ++    Q  +   
Sbjct: 21  LTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVST 80

Query: 309 NIHQALQLGQDANPSLGFNGQRCQMCLR-------SDPLHKVMERLANPGVRRLVIVEAG 361
           +I    +      P      +   +            P+  V++     G+R+ ++   G
Sbjct: 81  SIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNG 140

Query: 362 SKRVEGIISLSDVFRFL 378
             R+ GII+  DV + +
Sbjct: 141 --RLLGIITKKDVLKHI 155

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 44.1 bits (103), Expect = 3e-06
 Identities = 21/137 (15%), Positives = 39/137 (28%), Gaps = 20/137 (14%)

Query: 240 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKA 299
           R+ +        +  TASL   L   V+    S   V      + I              
Sbjct: 1   RVEDVMVTDVDTIDITASLEDVLRNYVENAKGSSV-VVKEGVRVGIV------------- 46

Query: 300 YAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVE 359
                  ++    A               +          + +  E++    V RL++ E
Sbjct: 47  ----TTWDVLEAIAEGDDLAEVKVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEE 102

Query: 360 AGSKRVEGIISLSDVFR 376
                + G+IS +D+ R
Sbjct: 103 DD--EIIGVISATDILR 117

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 160

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 43.1 bits (100), Expect = 1e-05
 Identities = 23/151 (15%), Positives = 49/151 (32%), Gaps = 12/151 (7%)

Query: 240 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAK 296
           ++G+   R    +  T++ G  L +L Q  +   P VD    N  L  I        L +
Sbjct: 12  QVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQR 71

Query: 297 DKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLR-------SDPLHKVMERLAN 349
             +  +    E  +        +                +          L K     + 
Sbjct: 72  RISAYRRQPFEEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSL 131

Query: 350 PGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 380
            G+ R  +   G  ++ G+++L+++   + G
Sbjct: 132 LGLDRAYVTSMG--KLVGVVALAEIQAAIEG 160

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 142

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 41.8 bits (97), Expect = 2e-05
 Identities = 23/141 (16%), Positives = 50/141 (35%), Gaps = 17/141 (12%)

Query: 240 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKA 299
           R+ +     F  +    ++  A+ ++ +  +  + + DDN + + + S   I        
Sbjct: 4   RVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSI-------- 55

Query: 300 YAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVE 359
                   +          D  P      +          +  V   L+  G+ R  +V+
Sbjct: 56  --------IKRFIPRNKKPDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVD 107

Query: 360 AGSKRVEGIISLSDVFRFLLG 380
               RV GI++L+D+ R+L  
Sbjct: 108 -DPGRVVGIVTLTDLSRYLSR 127

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 39.5 bits (91), Expect = 1e-04
 Identities = 22/132 (16%), Positives = 46/132 (34%), Gaps = 20/132 (15%)

Query: 247 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLD 306
                +   A L     ++ + ++ S+ +VD N  +  I  R  + A+ K K+      +
Sbjct: 12  TQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIVKAIGKGKSLETKAEE 71

Query: 307 EMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVE 366
            M                              P+   +  +    +R L +V+     ++
Sbjct: 72  FMTAS-------------------LITIREDSPITGALALMRQFNIRHLPVVD-DKGNLK 111

Query: 367 GIISLSDVFRFL 378
           GIIS+ D+ R +
Sbjct: 112 GIISIRDITRAI 123

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

 Score = 38.0 bits (87), Expect = 4e-04
 Identities = 11/142 (7%), Positives = 49/142 (34%), Gaps = 4/142 (2%)

Query: 238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD 297
           V  + +       ++     +   +  +++  V+    V  ++ L+ +     +  ++  
Sbjct: 3   VKDVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGF 62

Query: 298 KAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVI 357
             +  I  +E+       + +    +               PL + ++ + +  ++ + +
Sbjct: 63  HFFGFIPKEELIRSS---MKRLIAKNASEIMLDPVYVHMDTPLEEALKLMIDNNIQEMPV 119

Query: 358 VEAGSKRVEGIISLSDVFRFLL 379
           V+     + G ++  ++   L 
Sbjct: 120 VDE-KGEIVGDLNSLEILLALW 140

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

 Score = 35.7 bits (81), Expect = 0.003
 Identities = 19/143 (13%), Positives = 51/143 (35%), Gaps = 12/143 (8%)

Query: 157 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 216
                      ++E+  +IL++ V     +          +++ +  +  +LK    HF 
Sbjct: 12  LKPTVVEEDTPIEEIVDRILEDPVTRTVYVAR------DNKLVGMIPVMHLLKVSGFHFF 65

Query: 217 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 276
                  +++       +   + +           +     L  AL L++  ++  +P+V
Sbjct: 66  GFIPKEELIRS-----SMKRLIAKNASEIMLDPVYVHMDTPLEEALKLMIDNNIQEMPVV 120

Query: 277 DDNDSLLDIYSRSDI-TALAKDK 298
           D+   ++   +  +I  AL K +
Sbjct: 121 DEKGEIVGDLNSLEILLALWKGR 143

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]} Length = 121

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

 Score = 37.2 bits (85), Expect = 6e-04
 Identities = 17/141 (12%), Positives = 40/141 (28%), Gaps = 24/141 (17%)

Query: 240 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKA 299
           ++ +   + F M+  +A++   L  + Q   +   + D       + +        +D  
Sbjct: 2   KVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVN-------KEDLL 54

Query: 300 YAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVE 359
              +     N                            D +   +          L +V+
Sbjct: 55  DLDLDSSVFNKVS----------------LPDFFVHEEDNITHALLLFLEHQEPYLPVVD 98

Query: 360 AGSKRVEGIISLSDVFRFLLG 380
               R++G +SL D    L+ 
Sbjct: 99  EE-MRLKGAVSLHDFLEALIE 118

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 36.7 bits (84), Expect = 8e-04
 Identities = 20/132 (15%), Positives = 42/132 (31%), Gaps = 23/132 (17%)

Query: 160 VQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSS 219
           V   P D +++V     ++    +PI  +               +  I        K   
Sbjct: 7   VVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRL--------VGIISSRDIDFLKEEE 58

Query: 220 SSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN 279
               + +                        +     +L  A  +L ++    +PIV++N
Sbjct: 59  HDRFLEEIMTKR---------------EDLVVAPAGITLKEANEILQRSKKGKLPIVNEN 103

Query: 280 DSLLDIYSRSDI 291
           D L+ I +R+D+
Sbjct: 104 DELVAIIARTDL 115

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 36.7 bits (84), Expect = 0.001
 Identities = 21/128 (16%), Positives = 37/128 (28%), Gaps = 22/128 (17%)

Query: 252 LRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEM 308
           L P   +        +     IPI D       L+ I S  DI  L +++    +     
Sbjct: 9   LSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEEHDRFLEEIMT 68

Query: 309 NIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGI 368
                               +   +      L +  E L      +L IV      +  I
Sbjct: 69  K------------------REDLVVAPAGITLKEANEILQRSKKGKLPIVNEN-DELVAI 109

Query: 369 ISLSDVFR 376
           I+ +D+ +
Sbjct: 110 IARTDLKK 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	381
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.94
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.91
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.86
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.86
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.84
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.84
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.84
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.83
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.83
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.83
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.82
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.81
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.81
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.81
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.8
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.8
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.8
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.8
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.8
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.79
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.78
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.78
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.76
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.76
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.75
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.75
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.75
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.75
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.75
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.74
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.73
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.73
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.73
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.73
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.72
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.72
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.72
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.72
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.71
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.7
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.7
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.7
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.7
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.69
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.69
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.68
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.67
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.67
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.67
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.66
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.64
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.58

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.94  E-value=4.5e-26  Score=195.26  Aligned_cols=167  Identities=23%  Similarity=0.425  Sum_probs=136.6

Q ss_pred             HHHHHHHHHhhhCcccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeecccCCCCcEEEEeehHHHHHHHHHhccCCC
Q 016866           41 LSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGS  120 (381)
Q Consensus        41 ~~~~~~~~~l~~~~~~d~~p~s~~vi~ld~~~~v~~A~~~l~~~~i~~~pV~d~~~~~~vGilt~~D~~~il~~~~~~~~  120 (381)
                      -+.+.+.+||++++|||+||.|+++++++.+.|+.+|++.|.++++.++||||+++++++|++|..|++.++........
T Consensus         8 ~~~~~i~~fl~~~~~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~~~~~~~~   87 (179)
T d2ooxe1           8 GALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSS   87 (179)
T ss_dssp             HHHHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHcCCEeeeeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHHhcccccc
Confidence            37799999999999999999999999999999999999999999999999999888889999999999998765544321


Q ss_pred             -CCChhHHhhccHHHHHHHHHhhhccccCCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceE
Q 016866          121 -NLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEIL  199 (381)
Q Consensus       121 -~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~  199 (381)
                       .....+........+........          .|..+++++.+++++.+|+..|.+++++++||+|++...+ ..+++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~-~~~vv  156 (179)
T d2ooxe1          88 FPEAIAEIDKFRLLGLREVERKIG----------AIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETG-SEMIV  156 (179)
T ss_dssp             CGGGGGGGGGSBHHHHHHHHHHTT----------CSCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTTC-CEEEE
T ss_pred             chhhhhhhhccchhhhcccceeee----------ecccCceEECCCCcHHHHHHHhhhcCceEEEEEecCCCcC-CCcEE
Confidence             11223333344444444433322          6889999999999999999999999999999998743222 22799


Q ss_pred             EEeehhhHHHHHhhhcccC
Q 016866          200 YLASLSDILKCICRHFKHS  218 (381)
Q Consensus       200 gils~~dil~~l~~~~~~~  218 (381)
                      |++|++||++|++.++++.
T Consensus       157 giiT~~dIlk~l~~~~~~~  175 (179)
T d2ooxe1         157 SVLTQYRILKFISMNCKET  175 (179)
T ss_dssp             EEEEHHHHHHHHHTTCGGG
T ss_pred             EEEeHHHHHHHHHHhhhHh
Confidence            9999999999999887663

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=5.8e-24  Score=178.36  Aligned_cols=154  Identities=34%  Similarity=0.594  Sum_probs=125.2

Q ss_pred             HHHHHhhhCcccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeecccCCCCcEEEEeehHHHHHHHHHhccCCCCCCh
Q 016866           45 RISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTE  124 (381)
Q Consensus        45 ~~~~~l~~~~~~d~~p~s~~vi~ld~~~~v~~A~~~l~~~~i~~~pV~d~~~~~~vGilt~~D~~~il~~~~~~~~~~~~  124 (381)
                      -|.+||+++|+||+||.+.++++++.++|+.+|++.|.++++.++||+|++.++++|++|..|++..+....... ....
T Consensus         5 ~~~~~l~~~t~~Dlm~~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~~~-~~~~   83 (159)
T d2v8qe2           5 VYTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSA-LVQI   83 (159)
T ss_dssp             HHHHHHHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHH-TTTC
T ss_pred             HHHHHhcCCEEEeECCCCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhccccc-cchh
Confidence            478999999999999999999999999999999999999999999999988888999999999999876543211 1111


Q ss_pred             hHHhhccHHHHHHHHHhhhccccCCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeeh
Q 016866          125 EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASL  204 (381)
Q Consensus       125 ~~l~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~  204 (381)
                      ..........+.....            ..|..+++++++++++.+|+++|.+++++++||+|+  ++|   +++|++|+
T Consensus        84 ~~~~~~~~~~~~~~~~------------~~~~~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~--~~g---~~~GivT~  146 (159)
T d2v8qe2          84 YELEEHKIETWREVYL------------QDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDP--ESG---NTLYILTH  146 (159)
T ss_dssp             CCGGGCBHHHHHHHHS------------SSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECT--TTC---CEEEEECH
T ss_pred             hhhhhhhcccccceee------------eeeccceEEECCCCcHHHHHHHHHHhCCeEEEEEEC--CCC---eEEEEEeH
Confidence            1222223333332221            167889999999999999999999999999999964  467   89999999


Q ss_pred             hhHHHHHhhhcc
Q 016866          205 SDILKCICRHFK  216 (381)
Q Consensus       205 ~dil~~l~~~~~  216 (381)
                      +||++|+..+..
T Consensus       147 ~dilk~l~~~~~  158 (159)
T d2v8qe2         147 KRILKFLKLFIT  158 (159)
T ss_dssp             HHHHHHHHHHSC
T ss_pred             HHHHHHHHHHcC
Confidence            999999987643

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.86  E-value=2.8e-21  Score=160.78  Aligned_cols=133  Identities=25%  Similarity=0.568  Sum_probs=116.3

Q ss_pred             ccccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhccccccc
Q 016866          228 PVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDE  307 (381)
Q Consensus       228 ~i~~l~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~  307 (381)
                      |++++.+|+|.         +++++.+++++.+|+++|.+++++++||+|++|+++|+++.+|+++.+........   +
T Consensus         2 pl~~~~ig~~~---------~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~vG~it~~Dl~~~~~~~~~~~~---~   69 (153)
T d2ooxe2           2 PLNQMTIGTWS---------NLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSNL---D   69 (153)
T ss_dssp             BGGGTCCSBCS---------SCCCBCTTSBHHHHHHHHHHTTCSEEEEECGGGBEEEEEEHHHHHHHHGGGCGGGG---G
T ss_pred             CHHHcCCCCCC---------CCeEEeCcCcHHHHHHHHHHcCcceEeeecccceEEEEEEeeeeeehhcccccccc---c
Confidence            67888888886         78999999999999999999999999999999999999999999997765444333   4


Q ss_pred             ccHHHHHhcCCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866          308 MNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  380 (381)
Q Consensus       308 ~~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~  380 (381)
                      .++.+++....       .+..++++|.+++++.++++.|.+++++++|||| ++|+++|+||.+||++++++
T Consensus        70 ~~v~~~~~~~~-------~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd-~~~~lvGivT~~Dil~~~~~  134 (153)
T d2ooxe2          70 LSVGEALLKRP-------ANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVD-ENLKLEGILSLADILNYIIY  134 (153)
T ss_dssp             SBHHHHHHTSC-------CCSSCCCEECTTCBHHHHHHHHHHSCCSEEEEEC-TTCBEEEEEEHHHHHHHHHS
T ss_pred             cchhhheeeee-------cccCCCeEECCCCcHHHHHHhhhhceeeEEEEEc-CCCEEEEEEEHHHHHHHHHc
Confidence            67888776432       4556788999999999999999999999999999 47999999999999999864

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=3.7e-21  Score=157.64  Aligned_cols=136  Identities=25%  Similarity=0.498  Sum_probs=109.5

Q ss_pred             cccCccccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhccc
Q 016866          224 ILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI  303 (381)
Q Consensus       224 ~~~~~i~~l~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~  303 (381)
                      ++..|++++++++|.         ++.++.+++++.+|++.|.+++++++||+|++|+++|++|.+|+++..........
T Consensus         3 ~~~~~i~~l~~~~~~---------~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vG~it~~Di~~~~~~~~~~~~   73 (140)
T d2nyca1           3 FLKIPIGDLNIITQD---------NMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDL   73 (140)
T ss_dssp             GGGSBGGGSSCCBCS---------SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC----C
T ss_pred             cccCcHHHhCCccCC---------CCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCeEcceehhhHHHHHHhhcccccc
Confidence            467788888777665         79999999999999999999999999999999999999999999997764433222


Q ss_pred             ccccccHHHHHhcCCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 016866          304 HLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  379 (381)
Q Consensus       304 ~~~~~~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~  379 (381)
                         ...+.+.+....       .+..++++|++++++.++++.|.+++++++|||| ++|+++|+||.+||+++|+
T Consensus        74 ---~~~~~~~~~~~~-------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd-~~~~l~GiIt~~Dii~~l~  138 (140)
T d2nyca1          74 ---SLSVGEALMRRS-------DDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVD-DVGRLVGVLTLSDILKYIL  138 (140)
T ss_dssp             ---CSBHHHHHHHCC-------------CEECTTSBHHHHHHHHHHHTCSEEEEEC-TTSBEEEEEEHHHHHHHHH
T ss_pred             ---ccchhhhhhhhh-------hcccccEEECCCCcHHHHHHHHHhcCeeEEEEEe-CCCeEEEEEEHHHHHHHHh
Confidence               234455443322       3445788999999999999999999999999999 5899999999999999986

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.84  E-value=2.2e-21  Score=155.33  Aligned_cols=121  Identities=16%  Similarity=0.287  Sum_probs=104.0

Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCC
Q 016866          240 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  319 (381)
Q Consensus       240 ~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~  319 (381)
                      +++++|.++++++.+++++.+|+++|.+++++++||+|++|+++|++|.+|++.........   .....+++       
T Consensus         2 t~~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~~~Giit~~Di~~~~~~~~~~---~~~~~v~~-------   71 (123)
T d1y5ha3           2 TARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLD---PNTATAGE-------   71 (123)
T ss_dssp             CHHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTCC---TTTSBHHH-------
T ss_pred             CHHHhcCCCCcEECCcCcHHHHHHHHHHcCCCceEEEeccchhhhhhhhhhHhhhhhhcCCC---cccceEEE-------
Confidence            46788999999999999999999999999999999999999999999999998743322211   11345555       


Q ss_pred             CCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 016866          320 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  378 (381)
Q Consensus       320 ~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l  378 (381)
                            +|..++.++.+++++.+|++.|.+++++++||+| + |+++|+||.+||+++|
T Consensus        72 ------im~~~~~~v~~~~~~~~~~~~m~~~~~~~lpVvd-~-~~lvGiit~~Dil~~l  122 (123)
T d1y5ha3          72 ------LARDSIYYVDANASIQEMLNVMEEHQVRRVPVIS-E-HRLVGIVTEADIARHL  122 (123)
T ss_dssp             ------HHTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHTC
T ss_pred             ------EeeccceeeeecchHHHHHHHHHHcCceEEEEEE-C-CEEEEEEEHHHHHhhC
Confidence                  6667899999999999999999999999999999 3 7999999999999975

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.84  E-value=8e-21  Score=155.41  Aligned_cols=126  Identities=21%  Similarity=0.230  Sum_probs=107.3

Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhccc----ccccccHHHHHh
Q 016866          240 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI----HLDEMNIHQALQ  315 (381)
Q Consensus       240 ~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~----~~~~~~v~~~l~  315 (381)
                      +++++|.++++++.+++++.+|++.|.+++++++||+|++|+++|++|.+|++++.........    ...+.++.+   
T Consensus         3 ~v~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~v~~---   79 (139)
T d2o16a3           3 KVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPLFE---   79 (139)
T ss_dssp             BGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC---------CCCBHHH---
T ss_pred             EHHHhCcCCCeEECCcCCHHHHHHHHHHcCCCeeeeecccccccccccHHHHHHHHHhhhhhhhcccccccccchhH---
Confidence            5678899999999999999999999999999999999999999999999999987654322111    011234444   


Q ss_pred             cCCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866          316 LGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  380 (381)
Q Consensus       316 ~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~  380 (381)
                                +|.+++.+|++++++.+|++.|.+++++++||+| + |+++|+||.+||++++..
T Consensus        80 ----------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~-~~lvGiit~~Dil~~~~~  132 (139)
T d2o16a3          80 ----------VMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA-K-DVLVGIITDSDFVTIAIN  132 (139)
T ss_dssp             ----------HSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEE-T-TEEEEEECHHHHHHHHHH
T ss_pred             ----------hhccccccccccchHHHHHHHHHHcCceEEEEEE-C-CEEEEEEEHHHHHHHHHH
Confidence                      7888999999999999999999999999999999 3 899999999999999864

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.84  E-value=8e-21  Score=156.49  Aligned_cols=138  Identities=33%  Similarity=0.586  Sum_probs=116.8

Q ss_pred             ccccCccccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcc
Q 016866          223 PILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQ  302 (381)
Q Consensus       223 ~~~~~~i~~l~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~  302 (381)
                      .++.++++++.++++.         +++++.+++++.+|++.|.+++++++||+|++|+++|++|..|+++.+.......
T Consensus         5 ~f~~~~l~~l~i~~~~---------~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~~~~~~Gvit~~di~~~l~~~~~~~   75 (145)
T d2v8qe1           5 EFMSKSLEELQIGTYA---------NIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNN   75 (145)
T ss_dssp             GGGGSBHHHHTCSBCS---------SCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGGGGSSCCCC
T ss_pred             HHhhCCHHHHcCCCCC---------CceEEcCcCcHHHHHHHHHHcCCCcccccccCCceEEEEEcchhhhhhhcccccc
Confidence            4567788888877664         6889999999999999999999999999999999999999999988666443332


Q ss_pred             cccccccHHHHHhcCCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866          303 IHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  380 (381)
Q Consensus       303 ~~~~~~~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~  380 (381)
                      .   +.++.+......       .|..++.+|.+++++.+++++|.+++++++||+| ++|+++|+||.+||+++|+.
T Consensus        76 ~---~~~v~~~~~~~~-------~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd-~~g~l~GiVt~~dii~~lv~  142 (145)
T d2v8qe1          76 L---DVSVTKALQHRS-------HYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVD-EHDVVKGIVSLSDILQALVL  142 (145)
T ss_dssp             C---SSBHHHHGGGCC-------SCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEEC-TTSBEEEEEEHHHHHHHHHS
T ss_pred             h---hhhhhhccchhh-------hccCCCeEECCCCcHHHHHHHHHHcCceEEEEEc-cCCEEEEEEEHHHHHHHHHh
Confidence            2   356666554322       5667889999999999999999999999999999 47999999999999999974

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.83  E-value=5e-21  Score=159.67  Aligned_cols=139  Identities=18%  Similarity=0.259  Sum_probs=105.5

Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccc-ccccc----HHH--
Q 016866          240 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIH-LDEMN----IHQ--  312 (381)
Q Consensus       240 ~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~-~~~~~----v~~--  312 (381)
                      ++.++|.++++++.+++++.+|+++|.+++++++||+|++|+++|++|..|++............ .....    ...  
T Consensus         5 ~v~~~m~r~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~~~~lvG~it~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (156)
T d2yzqa1           5 EIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILESH   84 (156)
T ss_dssp             BSTTTSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGCGGGCC--------------------
T ss_pred             CHHHHhcCCCeEECCcCcHHHHHHHHHHcCCCEEEEEeCCCCceeEEeeeechhhhcccccccccccccchhhhhhhhhh
Confidence            56677999999999999999999999999999999999999999999999997644321111100 00000    000  


Q ss_pred             ---HHh--cCCCCCCCcc-cCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 016866          313 ---ALQ--LGQDANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  379 (381)
Q Consensus       313 ---~l~--~~~~~~~~~~-~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~  379 (381)
                         ...  .......+.+ +|++++.+|.+++++.++++.|.+++++++||+| ++|+++|+||++||+++|+
T Consensus        85 ~~~~~~~~~~~~~~~~v~~~m~~~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd-~~g~lvGivt~~Dil~~l~  156 (156)
T d2yzqa1          85 PTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIR-GEGDLIGLIRDFDLLKVLV  156 (156)
T ss_dssp             ------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-TTTEEEEEEEHHHHGGGGC
T ss_pred             hhhhHHHhhhcccCCEeehhcccCceEECcccccHHHHHHHHHcCeeEEEEEe-CCCEEEEEEEHHHHHHHhC
Confidence               000  0011223333 8999999999999999999999999999999999 4799999999999999985

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.83  E-value=2.1e-20  Score=153.42  Aligned_cols=123  Identities=20%  Similarity=0.288  Sum_probs=106.9

Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCC
Q 016866          240 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  319 (381)
Q Consensus       240 ~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~  319 (381)
                      +++++|.+++.++++++++.+|++.|.+++++++||+|++|+++|++|.+|+++.........   .+.++++       
T Consensus         4 ~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~~~~~~Giit~~di~~~~~~~~~~~---~~~~v~~-------   73 (142)
T d1pvma4           4 RVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKP---DEVPIRL-------   73 (142)
T ss_dssp             BGGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCCCG---GGSBGGG-------
T ss_pred             EHHHhCCCCCcEECCcCcHHHHHHHHHHCCCceEeeeccCCcccceEEeechhhhhhhhcccc---ccccccc-------
Confidence            567889999999999999999999999999999999999999999999999987543221111   1245554       


Q ss_pred             CCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 016866          320 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  379 (381)
Q Consensus       320 ~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~  379 (381)
                            +|+++++++++++++.+|++.|.+++++++||+| ++|+++|+||..||++++.
T Consensus        74 ------im~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~~g~l~Giit~~Dil~~l~  126 (142)
T d1pvma4          74 ------VMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVD-DPGRVVGIVTLTDLSRYLS  126 (142)
T ss_dssp             ------TSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEEC-TTCCEEEEEEHHHHTTTSC
T ss_pred             ------ccccccccccchhhHHHHHHHHHHcCCcEEEEEe-cCCEEEEEEEHHHHHHHHh
Confidence                  7888999999999999999999999999999999 4799999999999999874

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.83  E-value=2.9e-20  Score=149.57  Aligned_cols=121  Identities=17%  Similarity=0.264  Sum_probs=106.7

Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCC
Q 016866          240 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  319 (381)
Q Consensus       240 ~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~  319 (381)
                      .|+++|.++++++.+++++.+|+++|.+++++++||+| +|+++|++|.+|+.+....+...     +.++.+       
T Consensus         5 ~V~d~m~~~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d-~~~~~Givt~~dl~~~~~~~~~~-----~~~v~~-------   71 (127)
T d2ef7a1           5 IVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGIITERDIVKAIGKGKSL-----ETKAEE-------   71 (127)
T ss_dssp             BGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTTCCT-----TCBGGG-------
T ss_pred             CHHHhCCCCCeEECCcCcHHHHHHHHHHcCCceEEeec-ccchhhhcchhHHHHHHHhhccc-----cchhhh-------
Confidence            56778999999999999999999999999999999998 58999999999999876543321     234544       


Q ss_pred             CCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866          320 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  380 (381)
Q Consensus       320 ~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~  380 (381)
                            +|.+++.++++++++.+|++.|.+++++++||+| ++|+++|+||.+||+++|.+
T Consensus        72 ------~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd-~~~~lvGiit~~Dll~~i~~  125 (127)
T d2ef7a1          72 ------FMTASLITIREDSPITGALALMRQFNIRHLPVVD-DKGNLKGIISIRDITRAIDD  125 (127)
T ss_dssp             ------TSEECCCCEETTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHHHHHH
T ss_pred             ------hhhhhccccccccchhHHHHHHHHcCceEEEEEe-CCCeEEEEEEHHHHHHHHHh
Confidence                  6777899999999999999999999999999999 47999999999999999864

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.82  E-value=1.3e-19  Score=146.72  Aligned_cols=121  Identities=19%  Similarity=0.354  Sum_probs=105.0

Q ss_pred             cccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCC
Q 016866          241 IGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDA  320 (381)
Q Consensus       241 v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~  320 (381)
                      ++++|.++++++++++++.+|++.|.+++++++||+|++|+++|++|..|+++....+...    .+.++++        
T Consensus         7 V~~im~~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~~~~----~~~~v~~--------   74 (132)
T d2yzia1           7 IKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLP----YDIPVER--------   74 (132)
T ss_dssp             GGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCCC----TTSBGGG--------
T ss_pred             HHHHcCCCCeEECCcCcHHHHHHHHHHcCCcEEEEecccceeeeeeeHHHHHHHHhhccCc----cceeEee--------
Confidence            4556999999999999999999999999999999999999999999999999854432211    1345555        


Q ss_pred             CCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866          321 NPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  380 (381)
Q Consensus       321 ~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~  380 (381)
                           +|..++.++.+++++.++++.|.+++++++||++  +|+++|+||.+||++++..
T Consensus        75 -----im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~V~~--~~~~vGivt~~Dil~a~~~  127 (132)
T d2yzia1          75 -----IMTRNLITANVNTPLGEVLRKMAEHRIKHILIEE--EGKIVGIFTLSDLLEASRR  127 (132)
T ss_dssp             -----TCBCSCCEEETTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHC
T ss_pred             -----cccccccccCcchHHHHHHHHHHHcCCCEEEEEE--CCEEEEEEEHHHHHHHHHH
Confidence                 7888899999999999999999999999999887  4899999999999998753

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.81  E-value=1.2e-19  Score=144.50  Aligned_cols=120  Identities=19%  Similarity=0.245  Sum_probs=105.3

Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCC
Q 016866          240 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  319 (381)
Q Consensus       240 ~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~  319 (381)
                      +++++|.+++.++++++|+.+|++.|.+++++++||++ +|+++|++|.+|+++.+..+..    +.+.++.+       
T Consensus         1 kV~diM~~~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~-~~~~~Gvit~~Di~~~l~~~~~----~~~~~v~~-------   68 (120)
T d1pbja3           1 RVEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAIAEGDD----LAEVKVWE-------   68 (120)
T ss_dssp             CHHHHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTEEEEEEEHHHHHHHHHHTCC----TTTSBHHH-------
T ss_pred             ChHHhCCCCCeEECCcCcHHHHHHHHHHcCceEEEEEe-CCcEEEEEEeeecccccccccc----ccceeEee-------
Confidence            35678999999999999999999999999999999997 5999999999999986654322    22467776       


Q ss_pred             CCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 016866          320 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  379 (381)
Q Consensus       320 ~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~  379 (381)
                            +|..++.++++++++.+|++.|.+++++++||+|  +|+++|+||.+||+++.+
T Consensus        69 ------~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~V~~--~~~l~Givt~~Dil~A~~  120 (120)
T d1pbja3          69 ------VMERDLVTISPRATIKEAAEKMVKNVVWRLLVEE--DDEIIGVISATDILRAKM  120 (120)
T ss_dssp             ------HCBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHC
T ss_pred             ------ecccccccccchhHHHHHHHHHHHcCCeEEEEEE--CCEEEEEEEHHHHHhcCC
Confidence                  6777899999999999999999999999999987  489999999999999853

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.81  E-value=8.1e-20  Score=146.96  Aligned_cols=115  Identities=12%  Similarity=0.261  Sum_probs=98.6

Q ss_pred             CCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCccc
Q 016866          247 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF  326 (381)
Q Consensus       247 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~  326 (381)
                      ++++++++++++.+|+++|.+++++++||++ +|+++|++|.+|+++.........   .+.++.+             +
T Consensus        13 ~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~-~~~~vGiit~~Di~~~~~~~~~~~---~~~~v~~-------------i   75 (127)
T d2rc3a1          13 HTVVAIGPDDSVFNAMQKMAADNIGALLVMK-DEKLVGILTERDFSRKSYLLDKPV---KDTQVKE-------------I   75 (127)
T ss_dssp             CCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHGGGSSSCG---GGSBGGG-------------T
T ss_pred             CccEEECCcCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEccchhhhhhhhcccc---cceeEee-------------e
Confidence            4789999999999999999999999999998 799999999999987543211111   1244544             7


Q ss_pred             CCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866          327 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  380 (381)
Q Consensus       327 m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~  380 (381)
                      |+.++.+|.+++++.+|++.|.+++++++||+| + |+++|+||.+||+++++.
T Consensus        76 m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~-~~~~GiIt~~Dil~~~is  127 (127)
T d2rc3a1          76 MTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-D-GKVIGLLSIGDLVKDAIS  127 (127)
T ss_dssp             SBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHHHC
T ss_pred             ccceeEEeccCccHHHHHHHHHHCCCcEEEEEE-C-CEEEEEEEHHHHHHHHhC
Confidence            888999999999999999999999999999999 3 899999999999999863

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.81  E-value=1.2e-20  Score=150.77  Aligned_cols=117  Identities=21%  Similarity=0.313  Sum_probs=88.0

Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCC
Q 016866          240 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  319 (381)
Q Consensus       240 ~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~  319 (381)
                      +++++|.++++++++++++.+|++.|.+++++++||+|++|+++|++|.+|++....          +.++.+       
T Consensus         2 ~v~diM~~~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~G~it~~dl~~~~~----------~~~~~~-------   64 (122)
T d2yzqa2           2 RVKTIMTQNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVNPD----------EEQLAM-------   64 (122)
T ss_dssp             BHHHHSEESCCCEESSCC------------CCEEEEECTTCCEEEEEESSCC--------------------C-------
T ss_pred             CcccccCCCCEEECCcCcHHHHHHHHHHcCCcEEEEEeccccchhhhhcchhhhhhc----------ccchhh-------
Confidence            456778889999999999999999999999999999999999999999999876322          122222       


Q ss_pred             CCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866          320 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  380 (381)
Q Consensus       320 ~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~  380 (381)
                            +|.+++++|++++++.+|++.|.+++++++|||| ++|+++|+||.+||++++++
T Consensus        65 ------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd-~~~~liGiit~~dil~~~~~  118 (122)
T d2yzqa2          65 ------LVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVD-SKGKPVGILTVGDIIRRYFA  118 (122)
T ss_dssp             ------CCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHHHTTT
T ss_pred             ------ccccceeecchhhHHHHHHHHHHHcCcEEEEEEe-CCCEEEEEEEHHHHHHHHHh
Confidence                  7778899999999999999999999999999999 57999999999999998865

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.80  E-value=9.3e-20  Score=146.58  Aligned_cols=115  Identities=15%  Similarity=0.249  Sum_probs=103.1

Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhC-----CCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHH
Q 016866          240 RIGEANGRPFAMLRPTASLGSALALLVQA-----DVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQAL  314 (381)
Q Consensus       240 ~v~~~~~~~~~~v~~~~~l~~a~~~m~~~-----~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l  314 (381)
                      ++|.+|.++++++++++++.+|++.|.++     +++.+||+|++|+++|+++.+++.....          +.++.+  
T Consensus         2 taG~iM~~d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~~l~~~~~----------~~~v~~--   69 (127)
T d2ouxa2           2 TAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVNDD----------DTLIAD--   69 (127)
T ss_dssp             BHHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTSCT----------TSBHHH--
T ss_pred             ChhHhCCCCcEEECCCCcHHHHHHHhHhhcccccceeeeEEEecCCeEEEEEEeeccccccc----------cEEhhh--
Confidence            56788999999999999999999999887     4789999999999999999998865211          356777  


Q ss_pred             hcCCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 016866          315 QLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  378 (381)
Q Consensus       315 ~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l  378 (381)
                                 +|.++++++++++++.+|++.|.+++++++|||| ++|+++|+||..||++++
T Consensus        70 -----------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD-~~g~lvGiIt~~Dil~~i  121 (127)
T d2ouxa2          70 -----------ILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTD-YDDHLLGIVTVDDIIDVI  121 (127)
T ss_dssp             -----------HSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEEC-TTCBEEEEEEHHHHHHHH
T ss_pred             -----------hccCCCccCCCCCCHHHHHHHHHHhCCEEEEEEe-CCCEEEEEEEHHHHHHHH
Confidence                       7888999999999999999999999999999999 479999999999999876

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.80  E-value=1.2e-19  Score=148.46  Aligned_cols=127  Identities=11%  Similarity=0.156  Sum_probs=107.9

Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhc--ccccccccHHHHHhcC
Q 016866          240 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYA--QIHLDEMNIHQALQLG  317 (381)
Q Consensus       240 ~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~--~~~~~~~~v~~~l~~~  317 (381)
                      .|+++|.++++++++++|+.+|+++|.+++++++||+|++++++|+++..|+.+........  .......++++     
T Consensus         3 ~V~~iMt~~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~~~~~~g~i~~~di~~~~~~~~~~~~~~~~~~~~v~~-----   77 (141)
T d3ddja1           3 PVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKD-----   77 (141)
T ss_dssp             BHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCBHHH-----
T ss_pred             eeHHhCcCCCeEEcCcCcHHHHHHHHHHcCCCeeecccccCccccccccccchhhhhccccccccccccCCCHHH-----
Confidence            35667999999999999999999999999999999999999999999999999865432211  11111345555     


Q ss_pred             CCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866          318 QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  380 (381)
Q Consensus       318 ~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~  380 (381)
                              +|+++++++.+++++.++++.|.+++++++||+|+ +|+++|+||.+||++++.+
T Consensus        78 --------im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~-~~~~iGiIt~~Dil~~l~~  131 (141)
T d3ddja1          78 --------VMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNK-DNTIRGIITERDLLIALHH  131 (141)
T ss_dssp             --------HSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHHH
T ss_pred             --------HhCcccccccccchhhHHHHHHHHcCCCEEEEEcc-CCEEEEEEEHHHHHHHHHH
Confidence                    77788999999999999999999999999999994 7999999999999999864

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.80  E-value=1.5e-19  Score=148.62  Aligned_cols=133  Identities=7%  Similarity=0.130  Sum_probs=104.4

Q ss_pred             cccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHh--cCC
Q 016866          241 IGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQ--LGQ  318 (381)
Q Consensus       241 v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~--~~~  318 (381)
                      +.++|..+++++.+++++.+|++.|.+++++++||+|++|+++|++|.+|++++..........     ......  ...
T Consensus         6 v~~~m~~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vGiis~~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~   80 (145)
T d1o50a3           6 VCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFIP-----KEELIRSSMKR   80 (145)
T ss_dssp             HTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETTEEEEEEEHHHHHHHHHHHHHCCCC------------CCCC
T ss_pred             hHHhCCCCCEEECCcCcHHHHHHHHHHcCCceEEEeccCcceeeeeccchhhhhhhcccccccc-----hhHHHHhhhhh
Confidence            4566889999999999999999999999999999999999999999999999876644332221     111110  001


Q ss_pred             CCCCCcc-cCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866          319 DANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  380 (381)
Q Consensus       319 ~~~~~~~-~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~  380 (381)
                      ....+++ +| .+++++.+++++.+|+++|.+++++++|||| ++|+++|+||.+||+++|..
T Consensus        81 ~~~~~~~~~~-~~~~~i~~~~~l~~a~~~m~~~~i~~lpVVd-~~g~i~Gvit~~dil~~l~~  141 (145)
T d1o50a3          81 LIAKNASEIM-LDPVYVHMDTPLEEALKLMIDNNIQEMPVVD-EKGEIVGDLNSLEILLALWK  141 (145)
T ss_dssp             CSSCBHHHHC-BCCCCBCTTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHHHHHH
T ss_pred             ccccCHHHHc-CCCEEEcCCCCHHHHHHHHHHcCceEEEEEe-CCCeEEEEEEHHHHHHHHHh
Confidence            1111222 34 4678999999999999999999999999999 47999999999999999863

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.80  E-value=1.3e-19  Score=146.69  Aligned_cols=124  Identities=19%  Similarity=0.216  Sum_probs=103.0

Q ss_pred             cccccc--CCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhh-cccccccccHHHHHhc
Q 016866          240 RIGEAN--GRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAY-AQIHLDEMNIHQALQL  316 (381)
Q Consensus       240 ~v~~~~--~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~-~~~~~~~~~v~~~l~~  316 (381)
                      +++++|  ..++.++.+++++.+|+++|.+++++++||+|++|+++|+++.+|+++....... ......+.++.+    
T Consensus         3 tv~~~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~~~~vGiit~~di~~~~~~~~~~~~~~~~~~~v~~----   78 (132)
T d1yava3           3 TVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEFEKLDQITVEE----   78 (132)
T ss_dssp             BHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSSSBCGGGTTTSBHHH----
T ss_pred             CHHHccccccceEEEcCCCCHHHHHHHHHhhCCCceEEeecccccccEEEcchhHHHhhccccccccccccccccc----
Confidence            345556  5578999999999999999999999999999999999999999999987653221 111222456666    


Q ss_pred             CCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 016866          317 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  379 (381)
Q Consensus       317 ~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~  379 (381)
                               +|..++.++.+++++.++++.|.+++  .+||+| ++|+++|+||.+||++++.
T Consensus        79 ---------~m~~~~~~v~~~~~l~~~~~~~~~~~--~l~Vvd-~~~~~~Givt~~dil~~l~  129 (132)
T d1yava3          79 ---------VMLTDIPRLHINDPIMKGFGMVINNG--FVCVEN-DEQVFEGIFTRRVVLKELN  129 (132)
T ss_dssp             ---------HSBCSCCEEETTSBHHHHHHHTTTCS--EEEEEC-TTCBEEEEEEHHHHHHHHH
T ss_pred             ---------cccccccccccchhHHHHHHHHHhCC--EEEEEc-cCCEEEEEEEHHHHHHHHH
Confidence                     67778999999999999999998765  599999 4799999999999999985

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.80  E-value=3.3e-19  Score=143.08  Aligned_cols=113  Identities=19%  Similarity=0.308  Sum_probs=95.7

Q ss_pred             cCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcC--CCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCC
Q 016866          245 NGRPFAMLRPTASLGSALALLVQADVSSIPIVDD--NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANP  322 (381)
Q Consensus       245 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~  322 (381)
                      |..+++++++++++.+|+++|.+++++++||+|+  +|+++|++|.+|+......+         .+...          
T Consensus         3 mi~dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~~~~~~~---------~~~~~----------   63 (126)
T d1zfja4           3 VIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISDYN---------APISE----------   63 (126)
T ss_dssp             TSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCSCSS---------SBTTT----------
T ss_pred             CEeCceEECCCCCHHHHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHHHhhccC---------Cceee----------
Confidence            4456789999999999999999999999999996  78999999999997743211         11111          


Q ss_pred             CcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 016866          323 SLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  379 (381)
Q Consensus       323 ~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~  379 (381)
                        ..|..+++++++++++.+|+++|.+++++++|||| ++|+++|+||++||++++.
T Consensus        64 --~~~~~~~~~~~~~~~l~~a~~~m~~~~~~~lpVVd-~~g~lvGiiT~~Dil~~~~  117 (126)
T d1zfja4          64 --HMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVD-NSGRLSGLITIKDIEKVIE  117 (126)
T ss_dssp             --SCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEEC-TTSBEEEEEEHHHHHHHHH
T ss_pred             --eeeccceeecCCCCCHHHHHHHHHhcCCcEEEEEc-CCCeEEEEEEHHHHHHHhh
Confidence              15566889999999999999999999999999999 4799999999999999864

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.79  E-value=1.5e-19  Score=144.01  Aligned_cols=117  Identities=15%  Similarity=0.218  Sum_probs=103.7

Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCC
Q 016866          240 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  319 (381)
Q Consensus       240 ~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~  319 (381)
                      +++++|.+++.++.+++++.+|+++|.+++.+++||+|++|+++|+++.+|++++..          +.++.+       
T Consensus         2 ~v~~~m~~~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~~~~~~Gii~~~dl~~~~~----------~~~v~~-------   64 (121)
T d1vr9a3           2 KVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLDL----------DSSVFN-------   64 (121)
T ss_dssp             BGGGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTSCT----------TSBSGG-------
T ss_pred             CchhhhcCCCeEECCCCCHHHHHHhhhhcCcEEEEEEeCCceeEEEeehhhhhhhhc----------cccccc-------
Confidence            456779999999999999999999999999999999999999999999999975311          234444       


Q ss_pred             CCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866          320 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  380 (381)
Q Consensus       320 ~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~  380 (381)
                            +|..++.++++++++.++++.|.++++..+|||| ++|+++|+||..|+++++..
T Consensus        65 ------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd-e~g~~~Gvit~~dil~~l~~  118 (121)
T d1vr9a3          65 ------KVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVD-EEMRLKGAVSLHDFLEALIE  118 (121)
T ss_dssp             ------GCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEEC-TTCBEEEEEEHHHHHHHHHH
T ss_pred             ------cccCccEEECCCCCHHHHHHHHHhcCceeeeeEC-CCCeEEEEEEHHHHHHHHHH
Confidence                  6667889999999999999999999999999999 47999999999999999864

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.78  E-value=2.6e-18  Score=143.24  Aligned_cols=142  Identities=16%  Similarity=0.252  Sum_probs=108.7

Q ss_pred             cccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcC--CCcEEEEEeHHHHHHHHhhhhhcccc--cc-cccHH
Q 016866          237 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDD--NDSLLDIYSRSDITALAKDKAYAQIH--LD-EMNIH  311 (381)
Q Consensus       237 ~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~g~lvGiis~~Di~~l~~~~~~~~~~--~~-~~~v~  311 (381)
                      +.-+++++|.++++++++++++.+|+++|.+++++++||+|+  ++.++|+++..|++.++.........  .. ..+..
T Consensus         9 ~~~~V~diM~~~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~~~~~~~~~~~~~~~~   88 (160)
T d2d4za3           9 YNIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPFEEMLTLE   88 (160)
T ss_dssp             SSCBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCSCCBHH
T ss_pred             cceEHHHhcCCCCeEECCCCcHHHHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhccccccccchhhccccc
Confidence            344778889999999999999999999999999999999984  47899999999999866532221100  00 01111


Q ss_pred             HHH----hcCCCCCCCcc-cCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866          312 QAL----QLGQDANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  380 (381)
Q Consensus       312 ~~l----~~~~~~~~~~~-~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~  380 (381)
                      ...    ..........+ +|..+++++.+++++.+|++.|.+.+++++||+|  +|+++|+||++||+++|-|
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d--~g~lvGiIt~~Di~k~I~g  160 (160)
T d2d4za3          89 EIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS--MGKLVGVVALAEIQAAIEG  160 (160)
T ss_dssp             HHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHC
T ss_pred             hhhhhhhhhcccccceeeecccCCCEEEcCCCCHHHHHHHHHHcCCeEEEEEE--CCEEEEEEEHHHHHHHhCC
Confidence            111    11111111122 7888999999999999999999999999999998  3899999999999999865

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.78  E-value=9.6e-20  Score=149.77  Aligned_cols=116  Identities=18%  Similarity=0.272  Sum_probs=102.0

Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhCC-----CcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHH
Q 016866          240 RIGEANGRPFAMLRPTASLGSALALLVQAD-----VSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQAL  314 (381)
Q Consensus       240 ~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~-----~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l  314 (381)
                      ++|++|+++++++++++|+.+|++.|.+++     ++.+||+|++|+++|+++.+|+.....          +.++.+  
T Consensus         2 taG~iM~~~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~dl~~~~~----------~~~v~~--   69 (144)
T d2yvxa2           2 EAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVADP----------RTRVAE--   69 (144)
T ss_dssp             SSGGGCBSCCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCTTCBBCCBCBHHHHTTSCT----------TCBSTT--
T ss_pred             CcccccCCCCEEECCCCcHHHHHHHHHHhcccccceeeeEEecCCCCEecccchhhhhhccc----------ccchHH--
Confidence            578889999999999999999999998774     789999999999999999999865211          123333  


Q ss_pred             hcCCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 016866          315 QLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  379 (381)
Q Consensus       315 ~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~  379 (381)
                                 +|.++++++.+++++.+|++.|.+++++++|||| ++|+++|+||..||++++.
T Consensus        70 -----------im~~~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd-~~g~lvGiIt~~Dil~~l~  122 (144)
T d2yvxa2          70 -----------IMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVD-EEGRLVGIVTVDDVLDVLE  122 (144)
T ss_dssp             -----------TSBSSCCCEESSCCHHHHHHHHHHSCCSEEEEEC-SSCBEEEEEEHHHHHHHHH
T ss_pred             -----------hcccCCccCCCCChHHHHHHHHHHcCCCEEEEEe-ECCEEEEEEEHHHHHHHHH
Confidence                       7888999999999999999999999999999999 4799999999999999874

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.76  E-value=1.3e-18  Score=140.56  Aligned_cols=120  Identities=20%  Similarity=0.229  Sum_probs=102.2

Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEE--cCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcC
Q 016866          240 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV--DDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLG  317 (381)
Q Consensus       240 ~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~  317 (381)
                      +++++|.++++++++++++.+|++.|.+++++++||+  |++++++|+++..|+.+....+.....     ..       
T Consensus         2 ~V~dim~~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~~~~~~-----~~-------   69 (131)
T d2riha1           2 RTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLDLDG-----PA-------   69 (131)
T ss_dssp             BGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCCTTS-----BS-------
T ss_pred             CHHHhccCCCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeecccccccccccccc-----cc-------
Confidence            5678899999999999999999999999999999999  556899999999999987654332111     11       


Q ss_pred             CCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 016866          318 QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  379 (381)
Q Consensus       318 ~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~  379 (381)
                             ..+..++.++.+++++.+|+++|.+++++++||+| ++|+++|+||..||++++.
T Consensus        70 -------~~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVvd-~~g~l~Giit~~Dll~~~~  123 (131)
T d2riha1          70 -------MPIANSPITVLDTDPVHVAAEKMRRHNIRHVVVVN-KNGELVGVLSIRDLCFERA  123 (131)
T ss_dssp             -------GGGCBCCCEEETTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHSCHH
T ss_pred             -------ccccccceeEeeecchHHHHHHHHHCCeEEEEEEc-CCCeEEEEEEHHHHHHHHH
Confidence                   13345788999999999999999999999999999 5799999999999998753

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.76  E-value=1.1e-18  Score=140.20  Aligned_cols=118  Identities=14%  Similarity=0.195  Sum_probs=102.1

Q ss_pred             CCCCCCCCCceEeCCCCCHHHHHHHHHhC-----CcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCcc
Q 016866          150 GNGRPCPRPLVQAGPYDSLKEVALKILQN-----KVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPI  224 (381)
Q Consensus       150 ~~g~~~~~~~i~v~~~~sl~~a~~~m~~~-----~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~  224 (381)
                      .+|.+|.++++++++++++.+|++.|.++     +++.+||+|+   ++   +++|+++..+++..             .
T Consensus         2 taG~iM~~d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~---~~---~l~G~v~~~~l~~~-------------~   62 (127)
T d2ouxa2           2 TAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQ---EN---HLVGVISLRDLIVN-------------D   62 (127)
T ss_dssp             BHHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECT---TC---BEEEEEEHHHHTTS-------------C
T ss_pred             ChhHhCCCCcEEECCCCcHHHHHHHhHhhcccccceeeeEEEec---CC---eEEEEEEeeccccc-------------c
Confidence            35668999999999999999999999776     4789999976   67   89999999888651             0


Q ss_pred             ccCccccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhh
Q 016866          225 LQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK  298 (381)
Q Consensus       225 ~~~~i~~l~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~  298 (381)
                      ..            ..++++|.++++++.+++++.+|+++|.+++++++||+|++|+++|+||..|++.++.+.
T Consensus        63 ~~------------~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~~g~lvGiIt~~Dil~~i~ee  124 (127)
T d2ouxa2          63 DD------------TLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVIDDE  124 (127)
T ss_dssp             TT------------SBHHHHSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHH
T ss_pred             cc------------EEhhhhccCCCccCCCCCCHHHHHHHHHHhCCEEEEEEeCCCEEEEEEEHHHHHHHHHHH
Confidence            11            235566999999999999999999999999999999999999999999999999977643

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=2.6e-18  Score=143.39  Aligned_cols=134  Identities=14%  Similarity=0.170  Sum_probs=103.0

Q ss_pred             ccccccC--CCceEecCCCCHHHHHHHHHhCCCcEEEEEcC-CCcEEEEEeHHHHHHHHhhhhhccc-cc---ccccHHH
Q 016866          240 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDD-NDSLLDIYSRSDITALAKDKAYAQI-HL---DEMNIHQ  312 (381)
Q Consensus       240 ~v~~~~~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGiis~~Di~~l~~~~~~~~~-~~---~~~~v~~  312 (381)
                      ++.|+|.  .+++++.+++++.+|++.|.+++++++||+|+ +++++|++|.+|++........... ..   .......
T Consensus        14 t~~Dlm~~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~   93 (159)
T d2v8qe2          14 RCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELEEHKIET   93 (159)
T ss_dssp             BGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTTTCCCGGGCBHHH
T ss_pred             EEEeECCCCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhccccccchhhhhhhhhccc
Confidence            3445563  46789999999999999999999999999975 6899999999999986653221110 00   0011110


Q ss_pred             H-HhcCCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866          313 A-LQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  380 (381)
Q Consensus       313 ~-l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~  380 (381)
                      . ....       ..|..++++|++++++.+|+++|.++++|++||+|+++|+++|+||.+||+++|..
T Consensus        94 ~~~~~~-------~~~~~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~dilk~l~~  155 (159)
T d2v8qe2          94 WREVYL-------QDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKL  155 (159)
T ss_dssp             HHHHHS-------SSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHH
T ss_pred             ccceee-------eeeccceEEECCCCcHHHHHHHHHHhCCeEEEEEECCCCeEEEEEeHHHHHHHHHH
Confidence            0 0000       16778899999999999999999999999999998667899999999999999853

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.75  E-value=3.9e-18  Score=136.92  Aligned_cols=119  Identities=21%  Similarity=0.294  Sum_probs=103.5

Q ss_pred             CCCCCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccc
Q 016866          151 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVS  230 (381)
Q Consensus       151 ~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~  230 (381)
                      ++.+|.++++++++++++.+|+++|.+++++++||+++    +   +++|++|..|+++++.....        ...+  
T Consensus         6 V~d~m~~~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d~----~---~~~Givt~~dl~~~~~~~~~--------~~~~--   68 (127)
T d2ef7a1           6 VKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDG----N---KPVGIITERDIVKAIGKGKS--------LETK--   68 (127)
T ss_dssp             GGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEET----T---EEEEEEEHHHHHHHHHTTCC--------TTCB--
T ss_pred             HHHhCCCCCeEECCcCcHHHHHHHHHHcCCceEEeecc----c---chhhhcchhHHHHHHHhhcc--------ccch--
Confidence            34489999999999999999999999999999999964    5   79999999999998764321        1223  


Q ss_pred             cccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHh
Q 016866          231 SIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  296 (381)
Q Consensus       231 ~l~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~  296 (381)
                                ++++|.+++.++.+++++.+|++.|.+++++++||+|++|+++|++|.+|+++++.
T Consensus        69 ----------v~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGiit~~Dll~~i~  124 (127)
T d2ef7a1          69 ----------AEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAID  124 (127)
T ss_dssp             ----------GGGTSEECCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             ----------hhhhhhhhccccccccchhHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHH
Confidence                      34447788999999999999999999999999999999999999999999999765

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.75  E-value=9.6e-19  Score=141.97  Aligned_cols=130  Identities=9%  Similarity=0.131  Sum_probs=103.4

Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCC
Q 016866          240 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  319 (381)
Q Consensus       240 ~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~  319 (381)
                      +++++|.++++++.+++++.+|++.|.+++++++||+|  ++++|+++..|+++...........   ......+.    
T Consensus         2 ~V~~lM~~~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d--~~lvg~~~~~~~~~~~~~~~~~~~~---~~~~~~~~----   72 (135)
T d3ddja2           2 NIETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVAN--EKIEGLLTTRDLLSTVESYCKDSCS---QGDLYHIS----   72 (135)
T ss_dssp             SGGGTCEESCCEECTTSBHHHHHHHTTGGGCCEEEEES--SSEEEEEEHHHHHGGGTTCC---CC---HHHHHHHH----
T ss_pred             EeeEEeeCCCeEECCCCcHHHHHHHHHHhCCeEEEEEe--cceeceeeccchhhhhccccccchh---hhhccccc----
Confidence            45677988999999999999999999999999999997  4799999999999865432211110   00011010    


Q ss_pred             CCCCcc-cCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866          320 ANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  380 (381)
Q Consensus       320 ~~~~~~-~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~  380 (381)
                       ..+.+ +|..++.+|.+++++.+|++.|.+++++++||+| ++|+++|+||.+||++++..
T Consensus        73 -~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd-~~g~lvGiit~~Dil~~~~~  132 (135)
T d3ddja2          73 -TTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVD-INDKPVGIVTEREFLLLYKD  132 (135)
T ss_dssp             -TSBGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHGGGGGG
T ss_pred             -cCCHHHHhCCccceEEeccccchhhhhhhhcceeEEEEEe-CCCEEEEEEEHHHHHHHHHH
Confidence             01222 7888999999999999999999999999999999 47999999999999999864

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.75  E-value=2.8e-18  Score=142.70  Aligned_cols=136  Identities=13%  Similarity=0.175  Sum_probs=104.2

Q ss_pred             CCCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCc------cc-
Q 016866          153 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLP------IL-  225 (381)
Q Consensus       153 ~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~------~~-  225 (381)
                      .+|.++++++.+++++.+|++.|.+++++++||+|+   +|   +++|++|..|+++.+............      .. 
T Consensus         8 ~~m~r~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~---~~---~lvG~it~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~   81 (156)
T d2yzqa1           8 PYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDS---EG---NLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWIL   81 (156)
T ss_dssp             TTSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECT---TS---CEEEEEEGGGGGGCGGGCC-----------------
T ss_pred             HHhcCCCeEECCcCcHHHHHHHHHHcCCCEEEEEeC---CC---CceeEEeeeechhhhcccccccccccccchhhhhhh
Confidence            479999999999999999999999999999999976   67   899999999998866433221110000      00 


Q ss_pred             ----cCccccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHH
Q 016866          226 ----QQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL  294 (381)
Q Consensus       226 ----~~~i~~l~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l  294 (381)
                          ...............++++|.+++.++.+++++.++++.|.+++++++||+|++|+++|++|.+|++++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~v~~~m~~~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~~g~lvGivt~~Dil~~  154 (156)
T d2yzqa1          82 ESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKV  154 (156)
T ss_dssp             ---------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHGGG
T ss_pred             hhhhhhhHHHhhhcccCCEeehhcccCceEECcccccHHHHHHHHHcCeeEEEEEeCCCEEEEEEEHHHHHHH
Confidence                000111111122346788899999999999999999999999999999999999999999999999874

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.75  E-value=2e-18  Score=141.71  Aligned_cols=118  Identities=17%  Similarity=0.256  Sum_probs=103.0

Q ss_pred             CCCCCCCCCCceEeCCCCCHHHHHHHHHhCC-----cceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCc
Q 016866          149 DGNGRPCPRPLVQAGPYDSLKEVALKILQNK-----VATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLP  223 (381)
Q Consensus       149 ~~~g~~~~~~~i~v~~~~sl~~a~~~m~~~~-----i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~  223 (381)
                      |.+|++|+++++++.+++|+.+|++.|.+++     ++.+||+|+   +|   +++|+++.+|++...            
T Consensus         1 dtaG~iM~~~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~---~~---~l~G~v~~~dl~~~~------------   62 (144)
T d2yvxa2           1 DEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDE---KG---RLKGVLSLRDLIVAD------------   62 (144)
T ss_dssp             SSSGGGCBSCCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCT---TC---BBCCBCBHHHHTTSC------------
T ss_pred             CCcccccCCCCEEECCCCcHHHHHHHHHHhcccccceeeeEEecC---CC---CEecccchhhhhhcc------------
Confidence            4578899999999999999999999997774     789999987   67   899999999996521            


Q ss_pred             cccCccccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 016866          224 ILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  297 (381)
Q Consensus       224 ~~~~~i~~l~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~  297 (381)
                       ...            .+.++|.++++++.+++++.+|++.|.+++++++||||++|+++|+||.+|+++++.+
T Consensus        63 -~~~------------~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~~g~lvGiIt~~Dil~~l~~  123 (144)
T d2yvxa2          63 -PRT------------RVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEA  123 (144)
T ss_dssp             -TTC------------BSTTTSBSSCCCEESSCCHHHHHHHHHHSCCSEEEEECSSCBEEEEEEHHHHHHHHHH
T ss_pred             -ccc------------chHHhcccCCccCCCCChHHHHHHHHHHcCCCEEEEEeECCEEEEEEEHHHHHHHHHH
Confidence             112            3445588999999999999999999999999999999999999999999999997664

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.74  E-value=1.5e-17  Score=136.51  Aligned_cols=133  Identities=13%  Similarity=0.180  Sum_probs=103.9

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccc
Q 016866          154 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  233 (381)
Q Consensus       154 ~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~  233 (381)
                      .|..+++++.+++++.+|++.|.+++++++||+|+   +|   +++|++|..|+++++....................+ 
T Consensus         9 ~m~~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~---~~---~~vGiis~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-   81 (145)
T d1o50a3           9 LISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVAR---DN---KLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMKRL-   81 (145)
T ss_dssp             SSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEE---TT---EEEEEEEHHHHHHHHHHHHHCCCC-------CCCCC-
T ss_pred             hCCCCCEEECCcCcHHHHHHHHHHcCCceEEEecc---Cc---ceeeeeccchhhhhhhcccccccchhHHHHhhhhhc-
Confidence            68899999999999999999999999999999986   57   899999999999988765433221111111111111 


Q ss_pred             ccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 016866          234 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  297 (381)
Q Consensus       234 ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~  297 (381)
                         ....+.+.|. +++++.+++++.+|+++|.+++++++||||++|+++|+||.+|+++.+..
T Consensus        82 ---~~~~~~~~~~-~~~~i~~~~~l~~a~~~m~~~~i~~lpVVd~~g~i~Gvit~~dil~~l~~  141 (145)
T d1o50a3          82 ---IAKNASEIML-DPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWK  141 (145)
T ss_dssp             ---SSCBHHHHCB-CCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred             ---cccCHHHHcC-CCEEEcCCCCHHHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHHh
Confidence               1123344454 45789999999999999999999999999999999999999999997654

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.73  E-value=6.6e-18  Score=138.28  Aligned_cols=120  Identities=13%  Similarity=0.137  Sum_probs=103.5

Q ss_pred             CCCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccccc
Q 016866          153 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  232 (381)
Q Consensus       153 ~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l  232 (381)
                      .+|.++++++++++++.+|++.|.+++++.+||+|+   +|   +++|++|.+|+++.+......      ...      
T Consensus         7 dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~---~~---~~~Giit~~di~~~~~~~~~~------~~~------   68 (142)
T d1pvma4           7 KIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDD---NG---NDVGLLSERSIIKRFIPRNKK------PDE------   68 (142)
T ss_dssp             GTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECT---TS---CEEEEEEHHHHHHHTGGGCCC------GGG------
T ss_pred             HhCCCCCcEECCcCcHHHHHHHHHHCCCceEeeecc---CC---cccceEEeechhhhhhhhccc------ccc------
Confidence            378999999999999999999999999999999976   57   899999999998866432211      111      


Q ss_pred             cccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHh
Q 016866          233 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  296 (381)
Q Consensus       233 ~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~  296 (381)
                            ..++++|.++++++.+++++.+|+++|.+++++++||+|++|+++|++|..|+++.+.
T Consensus        69 ------~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~l~Giit~~Dil~~l~  126 (142)
T d1pvma4          69 ------VPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLS  126 (142)
T ss_dssp             ------SBGGGTSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSC
T ss_pred             ------cccccccccccccccchhhHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHHHHh
Confidence                  1345568889999999999999999999999999999999999999999999998654

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.73  E-value=6e-18  Score=138.02  Aligned_cols=125  Identities=18%  Similarity=0.246  Sum_probs=103.9

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccc
Q 016866          154 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  233 (381)
Q Consensus       154 ~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~  233 (381)
                      +|.++++++.+++++.+|++.|.+++++++||+|+   +|   +++|++|..|+++++.........    ...    . 
T Consensus         7 iM~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~---~~---~~~Giit~~dl~~~~~~~~~~~~~----~~~----~-   71 (139)
T d2o16a3           7 MMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDA---NK---KLLGIVSQRDLLAAQESSLQRSAQ----GDS----L-   71 (139)
T ss_dssp             TSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TC---BEEEEEEHHHHHHHHHHHCC-----------------
T ss_pred             hCcCCCeEECCcCCHHHHHHHHHHcCCCeeeeecc---cc---cccccccHHHHHHHHHhhhhhhhc----ccc----c-
Confidence            78889999999999999999999999999999976   67   899999999999988765432110    000    0 


Q ss_pred             ccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHh
Q 016866          234 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  296 (381)
Q Consensus       234 ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~  296 (381)
                        .....++++|.+++.++++++++.+|+++|.+++++++||+| +|+++|++|.+|+++++.
T Consensus        72 --~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~lvGiit~~Dil~~~~  131 (139)
T d2o16a3          72 --AFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA-KDVLVGIITDSDFVTIAI  131 (139)
T ss_dssp             ---CCCBHHHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEE-TTEEEEEECHHHHHHHHH
T ss_pred             --ccccchhHhhccccccccccchHHHHHHHHHHcCceEEEEEE-CCEEEEEEEHHHHHHHHH
Confidence              111245666899999999999999999999999999999998 599999999999999765

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.73  E-value=2e-17  Score=133.62  Aligned_cols=118  Identities=16%  Similarity=0.268  Sum_probs=102.0

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccc
Q 016866          154 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  233 (381)
Q Consensus       154 ~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~  233 (381)
                      +|.++++++++++++.+|++.|.+++++++||+|+   +|   +++|++|..|+++++......       ...      
T Consensus        10 im~~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~---~~---~~~Giit~~di~~~~~~~~~~-------~~~------   70 (132)
T d2yzia1          10 YMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVIND---DG---NVVGFFTKSDIIRRVIVPGLP-------YDI------   70 (132)
T ss_dssp             TCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHHHTTTTCCC-------TTS------
T ss_pred             HcCCCCeEECCcCcHHHHHHHHHHcCCcEEEEecc---cc---eeeeeeeHHHHHHHHhhccCc-------cce------
Confidence            78999999999999999999999999999999976   56   899999999999876532111       122      


Q ss_pred             ccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 016866          234 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  297 (381)
Q Consensus       234 ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~  297 (381)
                            .++++|.+++.++.+++++.++++.|.+++++++||++ +|+++|++|.+|++++..+
T Consensus        71 ------~v~~im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~V~~-~~~~vGivt~~Dil~a~~~  127 (132)
T d2yzia1          71 ------PVERIMTRNLITANVNTPLGEVLRKMAEHRIKHILIEE-EGKIVGIFTLSDLLEASRR  127 (132)
T ss_dssp             ------BGGGTCBCSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHC
T ss_pred             ------eEeecccccccccCcchHHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHH
Confidence                  34556888999999999999999999999999999876 7999999999999997653

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.73  E-value=4e-18  Score=136.06  Aligned_cols=116  Identities=16%  Similarity=0.201  Sum_probs=99.6

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccc
Q 016866          154 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  233 (381)
Q Consensus       154 ~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~  233 (381)
                      +|.++++++.+++++.+|++.|.+++++++||+|+   +|   +++|++|.+|++++...+...                
T Consensus         6 iM~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~---~~---~~~Giit~~Di~~~~~~~~~~----------------   63 (123)
T d1y5ha3           6 IMNAGVTCVGEHETLTAAAQYMREHDIGALPICGD---DD---RLHGMLTDRDIVIKGLAAGLD----------------   63 (123)
T ss_dssp             HSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECG---GG---BEEEEEEHHHHHHTTGGGTCC----------------
T ss_pred             hcCCCCcEECCcCcHHHHHHHHHHcCCCceEEEec---cc---hhhhhhhhhhHhhhhhhcCCC----------------
Confidence            57889999999999999999999999999999976   57   899999999998755433211                


Q ss_pred             ccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHH
Q 016866          234 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL  294 (381)
Q Consensus       234 ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l  294 (381)
                        .....++++|.+++.++.+++++.+|+++|.+++++++||+| +|+++|++|.+||++.
T Consensus        64 --~~~~~v~~im~~~~~~v~~~~~~~~~~~~m~~~~~~~lpVvd-~~~lvGiit~~Dil~~  121 (123)
T d1y5ha3          64 --PNTATAGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVIS-EHRLVGIVTEADIARH  121 (123)
T ss_dssp             --TTTSBHHHHHTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHT
T ss_pred             --cccceEEEEeeccceeeeecchHHHHHHHHHHcCceEEEEEE-CCEEEEEEEHHHHHhh
Confidence              011234566888999999999999999999999999999998 5899999999999884

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.72  E-value=1.9e-17  Score=140.82  Aligned_cols=137  Identities=12%  Similarity=0.193  Sum_probs=101.9

Q ss_pred             cccccC--CCceEecCCCCHHHHHHHHHhCCCcEEEEEcC-CCcEEEEEeHHHHHHHHhhhh-hcccc-----cccccHH
Q 016866          241 IGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDD-NDSLLDIYSRSDITALAKDKA-YAQIH-----LDEMNIH  311 (381)
Q Consensus       241 v~~~~~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGiis~~Di~~l~~~~~-~~~~~-----~~~~~v~  311 (381)
                      +.++|.  .+++++.++.++.+|++.|.+++++++||+|+ +++++|++|..|+++.+.... .....     +......
T Consensus        22 ~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~~~~~~~~~~~~~~~~~~~~~~  101 (179)
T d2ooxe1          22 SYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLL  101 (179)
T ss_dssp             HHHHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHHCSCGGGGGGGGGSBHH
T ss_pred             eeeeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHHhccccccchhhhhhhhccchh
Confidence            345564  47899999999999999999999999999984 689999999999998654211 11100     0001111


Q ss_pred             HHHhcCCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCC----CCeEEEEEehHHHHHHhhcC
Q 016866          312 QALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAG----SKRVEGIISLSDVFRFLLGV  381 (381)
Q Consensus       312 ~~l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~----~~~liGiIs~~DIl~~l~~~  381 (381)
                      .......    ..+.|..++++|.++++|.+|++.|.++++|++||+|++    +++++|+||++||+++|..+
T Consensus       102 ~~~~~~~----~~~~~~~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~~~~vvgiiT~~dIlk~l~~~  171 (179)
T d2ooxe1         102 GLREVER----KIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMN  171 (179)
T ss_dssp             HHHHHHH----HTTCSCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHTT
T ss_pred             hhcccce----eeeecccCceEECCCCcHHHHHHHhhhcCceEEEEEecCCCcCCCcEEEEEeHHHHHHHHHHh
Confidence            1000000    012678899999999999999999999999999999842    24799999999999999754

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.72  E-value=2.1e-19  Score=142.98  Aligned_cols=115  Identities=18%  Similarity=0.209  Sum_probs=60.8

Q ss_pred             cCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcC---CCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCC
Q 016866          245 NGRPFAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDAN  321 (381)
Q Consensus       245 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~  321 (381)
                      |..+++++.+++++.+|+++|.+++++++||+|+   +|+++|++|.+|+........       +.++.+         
T Consensus         2 m~~~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~~~~~~~~-------~~~~~~---------   65 (120)
T d1jr1a4           2 FITDPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEEH-------DRFLEE---------   65 (120)
T ss_dssp             EECTTCC----CCCC--CCBC---------------CTTCCC--------------------------------------
T ss_pred             cccCCEEECCcCCHHHHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeeeehhcccc-------CceeEE---------
Confidence            3346679999999999999999999999999985   679999999999864332211       122222         


Q ss_pred             CCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 016866          322 PSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  378 (381)
Q Consensus       322 ~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l  378 (381)
                        ...+..+++++++++++.+|++.|.+++++++|||| ++|+++|+||.+||++..
T Consensus        66 --~~~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVVd-~~~~lvGiiT~~Di~k~~  119 (120)
T d1jr1a4          66 --IMTKREDLVVAPAGITLKEANEILQRSKKGKLPIVN-ENDELVAIIARTDLKKNR  119 (120)
T ss_dssp             --CCSBTTTSCCEETTCCHHHHHHHTCSCC---CEEEE-TTTEEEEEECHHHHHHHH
T ss_pred             --EEeeccCceEECCCCCHHHHHHHHHHcCccEEEEEc-CCCEEEEEEEHHHhhhcc
Confidence              013445789999999999999999999999999999 479999999999999863

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.72  E-value=7.1e-17  Score=129.21  Aligned_cols=115  Identities=14%  Similarity=0.198  Sum_probs=95.3

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccccccc
Q 016866          155 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  234 (381)
Q Consensus       155 ~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i  234 (381)
                      |..+++++.|++++.+|+++|.+++++++||+|+ ..++   +++|++|.+|+.+....            ..+.     
T Consensus         3 mi~dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~-~~~~---~lvGivt~~Di~~~~~~------------~~~~-----   61 (126)
T d1zfja4           3 VIIDPFFLTPEHKVSEAEELMQRYRISGVPIVET-LANR---KLVGIITNRDMRFISDY------------NAPI-----   61 (126)
T ss_dssp             TSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESC-TTTC---BEEEEEEHHHHHHCSCS------------SSBT-----
T ss_pred             CEeCceEECCCCCHHHHHHHHHHhCCCcEEEEee-ccCC---eEEEEeEHHHHHHhhcc------------CCce-----
Confidence            4456789999999999999999999999999964 2245   79999999999773211            1111     


Q ss_pred             cccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHh
Q 016866          235 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  296 (381)
Q Consensus       235 g~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~  296 (381)
                            ....+..+++++.+++++.+|+++|.+++++++||||++|+++|+||.+|++++..
T Consensus        62 ------~~~~~~~~~~~~~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGiiT~~Dil~~~~  117 (126)
T d1zfja4          62 ------SEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIE  117 (126)
T ss_dssp             ------TTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             ------eeeeeccceeecCCCCCHHHHHHHHHhcCCcEEEEEcCCCeEEEEEEHHHHHHHhh
Confidence                  11235667889999999999999999999999999999999999999999999765

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=2.1e-17  Score=134.91  Aligned_cols=125  Identities=18%  Similarity=0.165  Sum_probs=97.3

Q ss_pred             CCCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccccc
Q 016866          153 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  232 (381)
Q Consensus       153 ~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l  232 (381)
                      ..+.++++++.+++++.+|++.|.+++++++||+|+   +|   +++|++|..|+++++........      ...+...
T Consensus        13 ~~~~~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~---~~---~~vG~it~~Di~~~~~~~~~~~~------~~~~~~~   80 (140)
T d2nyca1          13 IITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDE---NG---YLINVYEAYDVLGLIKGGIYNDL------SLSVGEA   80 (140)
T ss_dssp             CCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TC---BEEEEEEHHHHHHHHHTC----C------CSBHHHH
T ss_pred             CccCCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEec---CC---eEcceehhhHHHHHHhhcccccc------ccchhhh
Confidence            357889999999999999999999999999999976   67   89999999999999876543211      1111110


Q ss_pred             cccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHH
Q 016866          233 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  295 (381)
Q Consensus       233 ~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~  295 (381)
                            ......+..+++++.+++++.+|++.|.+++++++||||++|+++|+||.+|+++++
T Consensus        81 ------~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd~~~~l~GiIt~~Dii~~l  137 (140)
T d2nyca1          81 ------LMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYI  137 (140)
T ss_dssp             ------HHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred             ------hhhhhhcccccEEECCCCcHHHHHHHHHhcCeeEEEEEeCCCeEEEEEEHHHHHHHH
Confidence                  011122455788999999999999999999999999999999999999999999865

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.71  E-value=5.4e-18  Score=137.43  Aligned_cols=126  Identities=18%  Similarity=0.128  Sum_probs=103.5

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccc
Q 016866          154 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  233 (381)
Q Consensus       154 ~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~  233 (381)
                      +|.++++++.+++++.+|++.|.+++++++||+|+        +++|+++..++++++........         .....
T Consensus         6 lM~~~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d~--------~lvg~~~~~~~~~~~~~~~~~~~---------~~~~~   68 (135)
T d3ddja2           6 LMIKNPPILSKEDRLGSAFKKINEGGIGRIIVANE--------KIEGLLTTRDLLSTVESYCKDSC---------SQGDL   68 (135)
T ss_dssp             TCEESCCEECTTSBHHHHHHHTTGGGCCEEEEESS--------SEEEEEEHHHHHGGGTTCC---C---------CHHHH
T ss_pred             EeeCCCeEECCCCcHHHHHHHHHHhCCeEEEEEec--------ceeceeeccchhhhhccccccch---------hhhhc
Confidence            68888999999999999999999999999999954        69999999999998754332211         00000


Q ss_pred             ccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHh
Q 016866          234 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  296 (381)
Q Consensus       234 ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~  296 (381)
                      .......++++|..+++++.+++++.+|+++|.+++++++||+|++|+++|+||.+|+++++.
T Consensus        69 ~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiit~~Dil~~~~  131 (135)
T d3ddja2          69 YHISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYK  131 (135)
T ss_dssp             HHHHTSBGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGGG
T ss_pred             cccccCCHHHHhCCccceEEeccccchhhhhhhhcceeEEEEEeCCCEEEEEEEHHHHHHHHH
Confidence            111223567779999999999999999999999999999999999999999999999998655

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.70  E-value=6.7e-17  Score=128.43  Aligned_cols=113  Identities=14%  Similarity=0.159  Sum_probs=99.8

Q ss_pred             CCCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccccc
Q 016866          153 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  232 (381)
Q Consensus       153 ~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l  232 (381)
                      .+|.++++++.+++|+.+|+++|.+++.+.+||+|+   +|   +++|+++..|++++.             ...     
T Consensus         5 ~~m~~~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~---~~---~~~Gii~~~dl~~~~-------------~~~-----   60 (121)
T d1vr9a3           5 KWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDR---EG---HFRGVVNKEDLLDLD-------------LDS-----   60 (121)
T ss_dssp             GGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECT---TS---BEEEEEEGGGGTTSC-------------TTS-----
T ss_pred             hhhcCCCeEECCCCCHHHHHHhhhhcCcEEEEEEeC---Cc---eeEEEeehhhhhhhh-------------ccc-----
Confidence            368899999999999999999999999999999976   57   899999999997621             112     


Q ss_pred             cccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHh
Q 016866          233 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  296 (381)
Q Consensus       233 ~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~  296 (381)
                             .+.++|..++.++++++++.++++.|.+++..++||+|++|+++|++|..|+++.+.
T Consensus        61 -------~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvde~g~~~Gvit~~dil~~l~  117 (121)
T d1vr9a3          61 -------SVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALI  117 (121)
T ss_dssp             -------BSGGGCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             -------cccccccCccEEECCCCCHHHHHHHHHhcCceeeeeECCCCeEEEEEEHHHHHHHHH
Confidence                   344557888999999999999999999999999999999999999999999999665

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.70  E-value=2e-17  Score=135.03  Aligned_cols=125  Identities=10%  Similarity=0.161  Sum_probs=105.4

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccc
Q 016866          154 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  233 (381)
Q Consensus       154 ~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~  233 (381)
                      +|+++++++++++|+.+|+++|.+++++++||+++   ++   +++|+++..|+++++......... .....       
T Consensus         7 iMt~~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~---~~---~~~g~i~~~di~~~~~~~~~~~~~-~~~~~-------   72 (141)
T d3ddja1           7 FMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDD---DN---KVVGIVTVVNAIKQLAKAVDKLDP-DYFYG-------   72 (141)
T ss_dssp             HSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHHHHHHHHHHTCT-HHHHT-------
T ss_pred             hCcCCCeEEcCcCcHHHHHHHHHHcCCCeeecccc---cC---ccccccccccchhhhhcccccccc-ccccC-------
Confidence            58889999999999999999999999999999976   56   799999999999988654322110 01112       


Q ss_pred             ccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 016866          234 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  297 (381)
Q Consensus       234 ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~  297 (381)
                           ..++++|.++++++.+++++.+++++|.+++++++||+|++|+++|+||.+|+++.+.+
T Consensus        73 -----~~v~~im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~~~~~iGiIt~~Dil~~l~~  131 (141)
T d3ddja1          73 -----KVVKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHH  131 (141)
T ss_dssp             -----CBHHHHSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred             -----CCHHHHhCcccccccccchhhHHHHHHHHcCCCEEEEEccCCEEEEEEEHHHHHHHHHH
Confidence                 24556688999999999999999999999999999999999999999999999996653

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.70  E-value=1.4e-17  Score=134.48  Aligned_cols=130  Identities=18%  Similarity=0.190  Sum_probs=105.0

Q ss_pred             CcccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeecccCCCCcEEEEeehHHHHHHHHHhccCCCCCChhHHhhccH
Q 016866           53 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI  132 (381)
Q Consensus        53 ~~~~d~~p~s~~vi~ld~~~~v~~A~~~l~~~~i~~~pV~d~~~~~~vGilt~~D~~~il~~~~~~~~~~~~~~l~~~~i  132 (381)
                      .|+.++|.++.++++++++.|+.+|++.|.+++++++||+|++ ++++|++|..|+++.+....    ....+.....++
T Consensus         2 ~tv~~~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~-~~~vGiit~~di~~~~~~~~----~~~~~~~~~~~v   76 (132)
T d1yava3           2 ATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPS-YRLHGLIGTNMIMNSIFGLE----RIEFEKLDQITV   76 (132)
T ss_dssp             CBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTT-CBEEEEEEHHHHHHHHBCSS----SBCGGGTTTSBH
T ss_pred             CCHHHccccccceEEEcCCCCHHHHHHHHHhhCCCceEEeecc-cccccEEEcchhHHHhhccc----cccccccccccc
Confidence            5778888888999999999999999999999999999999976 67999999999988663211    111122222222


Q ss_pred             HHHHHHHHhhhccccCCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHh
Q 016866          133 SAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCIC  212 (381)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~  212 (381)
                      ..                   .|.++++.+.+++++.+|+.+|.+++  .+||+|+   +|   +++|++|.+|+++++.
T Consensus        77 ~~-------------------~m~~~~~~v~~~~~l~~~~~~~~~~~--~l~Vvd~---~~---~~~Givt~~dil~~l~  129 (132)
T d1yava3          77 EE-------------------VMLTDIPRLHINDPIMKGFGMVINNG--FVCVEND---EQ---VFEGIFTRRVVLKELN  129 (132)
T ss_dssp             HH-------------------HSBCSCCEEETTSBHHHHHHHTTTCS--EEEEECT---TC---BEEEEEEHHHHHHHHH
T ss_pred             cc-------------------cccccccccccchhHHHHHHHHHhCC--EEEEEcc---CC---EEEEEEEHHHHHHHHH
Confidence            22                   46788999999999999999998765  4999976   67   8999999999999987


Q ss_pred             hh
Q 016866          213 RH  214 (381)
Q Consensus       213 ~~  214 (381)
                      ++
T Consensus       130 ~~  131 (132)
T d1yava3         130 KH  131 (132)
T ss_dssp             HH
T ss_pred             hh
Confidence            64

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.70  E-value=1.2e-16  Score=128.14  Aligned_cols=113  Identities=17%  Similarity=0.282  Sum_probs=96.4

Q ss_pred             CCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccccccccc
Q 016866          157 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  236 (381)
Q Consensus       157 ~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~  236 (381)
                      ++++++++++++.+|+++|.+++++++||+++    +   +++|++|..|+++.+......      ...          
T Consensus        13 ~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~~----~---~~vGiit~~Di~~~~~~~~~~------~~~----------   69 (127)
T d2rc3a1          13 HTVVAIGPDDSVFNAMQKMAADNIGALLVMKD----E---KLVGILTERDFSRKSYLLDKP------VKD----------   69 (127)
T ss_dssp             CCCCEECTTSBHHHHHHHHHHHTCSEEEEEET----T---EEEEEEEHHHHHHHGGGSSSC------GGG----------
T ss_pred             CccEEECCcCcHHHHHHHHHHcCCCEEEEEEC----C---eEEEEEEccchhhhhhhhccc------ccc----------
Confidence            57899999999999999999999999999964    5   799999999998865432211      111          


Q ss_pred             cccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHH
Q 016866          237 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  295 (381)
Q Consensus       237 ~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~  295 (381)
                        ..+.++|.+++.++.+++++.+|+++|.+++++++||+| +|+++|+||.+|+++..
T Consensus        70 --~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~~GiIt~~Dil~~~  125 (127)
T d2rc3a1          70 --TQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDA  125 (127)
T ss_dssp             --SBGGGTSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred             --eeEeeeccceeEEeccCccHHHHHHHHHHCCCcEEEEEE-CCEEEEEEEHHHHHHHH
Confidence              234556889999999999999999999999999999998 69999999999999853

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.69  E-value=1.1e-16  Score=133.05  Aligned_cols=141  Identities=11%  Similarity=0.043  Sum_probs=108.2

Q ss_pred             CCCCCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcc-
Q 016866          151 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPV-  229 (381)
Q Consensus       151 ~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i-  229 (381)
                      ++.+|.++++++++++++.+|+++|.+++++++||+++ .+++   .++|+++..|+++++.................. 
T Consensus        13 V~diM~~~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~-~~~~---~lvg~is~~dl~~~l~~~~~~~~~~~~~~~~~~~   88 (160)
T d2d4za3          13 VGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDT-PDTN---TLLGSIDRTEVEGLLQRRISAYRRQPFEEMLTLE   88 (160)
T ss_dssp             TTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESC-TTTC---BEEEEEEHHHHHHHHHHHHHTTSSSCCCSCCBHH
T ss_pred             HHHhcCCCCeEECCCCcHHHHHHHHHhcCCCccccccc-cccc---cccccchHHHHHHHHhhccccccccchhhccccc
Confidence            34589999999999999999999999999999999974 2345   799999999999998765433211000000000 


Q ss_pred             -----ccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHh
Q 016866          230 -----SSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  296 (381)
Q Consensus       230 -----~~l~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~  296 (381)
                           ...........++++|.++++++.+++++.+|+++|.+++++++||+| +|+++|+||++||++++.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d-~g~lvGiIt~~Di~k~I~  159 (160)
T d2d4za3          89 EIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAIE  159 (160)
T ss_dssp             HHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             hhhhhhhhhcccccceeeecccCCCEEEcCCCCHHHHHHHHHHcCCeEEEEEE-CCEEEEEEEHHHHHHHhC
Confidence                 000011122345677889999999999999999999999999999998 699999999999999754

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.69  E-value=1e-16  Score=127.10  Aligned_cols=114  Identities=17%  Similarity=0.222  Sum_probs=99.3

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccc
Q 016866          154 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  233 (381)
Q Consensus       154 ~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~  233 (381)
                      +|+++++++++++|+.+|++.|.+++++.+||.++    |   +++|++|.+||++++......       ...      
T Consensus         5 iM~~~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~~----~---~~~Gvit~~Di~~~l~~~~~~-------~~~------   64 (120)
T d1pbja3           5 VMVTDVDTIDITASLEDVLRNYVENAKGSSVVVKE----G---VRVGIVTTWDVLEAIAEGDDL-------AEV------   64 (120)
T ss_dssp             HCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEET----T---EEEEEEEHHHHHHHHHHTCCT-------TTS------
T ss_pred             hCCCCCeEECCcCcHHHHHHHHHHcCceEEEEEeC----C---cEEEEEEeeeccccccccccc-------cce------
Confidence            68899999999999999999999999999999863    6   899999999999987653211       122      


Q ss_pred             ccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHH
Q 016866          234 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL  294 (381)
Q Consensus       234 ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l  294 (381)
                            .+.++|.+++.++++++++.+|+++|.+++++++||++ +|+++|++|.+|++++
T Consensus        65 ------~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~V~~-~~~l~Givt~~Dil~A  118 (120)
T d1pbja3          65 ------KVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEE-DDEIIGVISATDILRA  118 (120)
T ss_dssp             ------BHHHHCBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHH
T ss_pred             ------eEeeecccccccccchhHHHHHHHHHHHcCCeEEEEEE-CCEEEEEEEHHHHHhc
Confidence                  34555888999999999999999999999999999987 7999999999999985

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.68  E-value=4.7e-17  Score=129.53  Aligned_cols=111  Identities=16%  Similarity=0.199  Sum_probs=82.4

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccc
Q 016866          154 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  233 (381)
Q Consensus       154 ~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~  233 (381)
                      +|.++++++++++++.+|++.|.+++++.+||+|+   +|   +++|++|..|++....             ..      
T Consensus         6 iM~~~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~---~~---~~~G~it~~dl~~~~~-------------~~------   60 (122)
T d2yzqa2           6 IMTQNPVTITLPATRNYALELFKKYKVRSFPVVNK---EG---KLVGIISVKRILVNPD-------------EE------   60 (122)
T ss_dssp             HSEESCCCEESSCC------------CCEEEEECT---TC---CEEEEEESSCC--------------------------
T ss_pred             ccCCCCEEECCcCcHHHHHHHHHHcCCcEEEEEec---cc---cchhhhhcchhhhhhc-------------cc------
Confidence            57788999999999999999999999999999976   67   8999999999986211             11      


Q ss_pred             ccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHH
Q 016866          234 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  295 (381)
Q Consensus       234 ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~  295 (381)
                            .++++|.++++++.+++++.+|+++|.+++++++||+|++|+++|++|.+|+++..
T Consensus        61 ------~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~liGiit~~dil~~~  116 (122)
T d2yzqa2          61 ------QLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRY  116 (122)
T ss_dssp             ---------CCCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHT
T ss_pred             ------chhhccccceeecchhhHHHHHHHHHHHcCcEEEEEEeCCCEEEEEEEHHHHHHHH
Confidence                  23455888999999999999999999999999999999999999999999999743

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.3e-16  Score=134.30  Aligned_cols=129  Identities=15%  Similarity=0.215  Sum_probs=95.3

Q ss_pred             eEecCCCCHHHHHHHHHhCCCcEEEEE--cCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhc------CCCCC
Q 016866          250 AMLRPTASLGSALALLVQADVSSIPIV--DDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL------GQDAN  321 (381)
Q Consensus       250 ~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~------~~~~~  321 (381)
                      +.+.++.++.+|.++|.+++++++||+  +++++++|++|.+|++.++.................+...      .....
T Consensus        20 v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (169)
T d2j9la1          20 VLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVSTSIIYFTEHSPPLPPYTPPT   99 (169)
T ss_dssp             CEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCTTCEEECSSSCCCCCTTCCCC
T ss_pred             EECCCcCCHHHHHHHHHHcCCCceeeeecCCCCeEEEEEEhHHHHHHHhcccccccccccchhhhhcccchhhhhccccc
Confidence            445678899999999999999999999  4578999999999999876533222111101111000000      00011


Q ss_pred             CCcc-cCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866          322 PSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  380 (381)
Q Consensus       322 ~~~~-~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~  380 (381)
                      .+++ +|.+++++|.+++++.+++++|.+++++++||+|  +|+++|+||++||++++..
T Consensus       100 ~~v~~im~~~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d--~g~lvGiIt~~Dil~~l~~  157 (169)
T d2j9la1         100 LKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH--NGRLLGIITKKDVLKHIAQ  157 (169)
T ss_dssp             EECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHH
T ss_pred             cchhhhccCCCEEECCCCcHHHHHHHHHhcCceEEEEEE--CCEEEEEEEHHHHHHHHHH
Confidence            1122 7888999999999999999999999999999988  4899999999999999864

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.67  E-value=3e-16  Score=129.85  Aligned_cols=123  Identities=22%  Similarity=0.199  Sum_probs=100.4

Q ss_pred             CCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccc
Q 016866          156 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLG  235 (381)
Q Consensus       156 ~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig  235 (381)
                      .++++++.+++++.+|++.|.+++++++||+|+   +|   +++|++|..|+++++......      ....++.+.   
T Consensus        11 ~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~---~~---~~vG~it~~Dl~~~~~~~~~~------~~~~~v~~~---   75 (153)
T d2ooxe2          11 WSNLATASMETKVYDVIKMLAEKNISAVPIVNS---EG---TLLNVYESVDVMHLIQDGDYS------NLDLSVGEA---   75 (153)
T ss_dssp             CSSCCCBCTTSBHHHHHHHHHHTTCSEEEEECG---GG---BEEEEEEHHHHHHHHGGGCGG------GGGSBHHHH---
T ss_pred             CCCCeEEeCcCcHHHHHHHHHHcCcceEeeecc---cc---eEEEEEEeeeeeehhcccccc------ccccchhhh---
Confidence            468999999999999999999999999999976   56   899999999999987654321      122222222   


Q ss_pred             ccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHh
Q 016866          236 TWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  296 (381)
Q Consensus       236 ~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~  296 (381)
                         ......+..++.++.+++++.++++.|.+++++++||+|++|+++|++|++|+++++.
T Consensus        76 ---~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGivT~~Dil~~~~  133 (153)
T d2ooxe2          76 ---LLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYII  133 (153)
T ss_dssp             ---HHTSCCCSSCCCEECTTCBHHHHHHHHHHSCCSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             ---eeeeecccCCCeEECCCCcHHHHHHhhhhceeeEEEEEcCCCEEEEEEEHHHHHHHHH
Confidence               0112234567889999999999999999999999999999999999999999999654

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=2.8e-16  Score=128.79  Aligned_cols=123  Identities=17%  Similarity=0.177  Sum_probs=100.7

Q ss_pred             CCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccc
Q 016866          156 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLG  235 (381)
Q Consensus       156 ~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig  235 (381)
                      .++++++.+++++.+|++.|.+++++++||+|+   +|   +++|++|..|+++++......      ....++...   
T Consensus        19 ~~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~---~~---~~~Gvit~~di~~~l~~~~~~------~~~~~v~~~---   83 (145)
T d2v8qe1          19 YANIAMVRTTTPVYVALGIFVQHRVSALPVVDE---KG---RVVDIYSKFDVINLAAEKTYN------NLDVSVTKA---   83 (145)
T ss_dssp             CSSCCCEETTCBHHHHHHHHHHHCCSEEEEECT---TS---BEEEEEEGGGTGGGGGSSCCC------CCSSBHHHH---
T ss_pred             CCCceEEcCcCcHHHHHHHHHHcCCCccccccc---CC---ceEEEEEcchhhhhhhccccc------chhhhhhhc---
Confidence            467899999999999999999999999999976   67   899999999999877543211      122222211   


Q ss_pred             ccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHh
Q 016866          236 TWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  296 (381)
Q Consensus       236 ~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~  296 (381)
                         ......|..+++++.+++++.+++++|.+++++++||+|++|+++|+||.+||++++-
T Consensus        84 ---~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~GiVt~~dii~~lv  141 (145)
T d2v8qe1          84 ---LQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALV  141 (145)
T ss_dssp             ---GGGCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             ---cchhhhccCCCeEECCCCcHHHHHHHHHHcCceEEEEEccCCEEEEEEEHHHHHHHHH
Confidence               1223446778899999999999999999999999999999999999999999999653

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.66  E-value=1.5e-16  Score=128.03  Aligned_cols=117  Identities=17%  Similarity=0.238  Sum_probs=98.2

Q ss_pred             CCCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccccc
Q 016866          153 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  232 (381)
Q Consensus       153 ~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l  232 (381)
                      .+|.++++++++++++.+|++.|.+++++++||++.+. .+   +++|+++..|+++++.......        ..    
T Consensus         5 dim~~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~-~~---~~iGi~~~~dl~~~~~~~~~~~--------~~----   68 (131)
T d2riha1           5 ELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDN-PK---RPVAVVSERDILRAVAQRLDLD--------GP----   68 (131)
T ss_dssp             GGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTE-EE---EEEEEEEHHHHHHHHHTTCCTT--------SB----
T ss_pred             HhccCCCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcC-CC---EEEEEEeeeccccccccccccc--------cc----
Confidence            37899999999999999999999999999999996422 35   7999999999999876543211        01    


Q ss_pred             cccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHH
Q 016866          233 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL  294 (381)
Q Consensus       233 ~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l  294 (381)
                               ...+..++.++.+++++.+|+++|.+++++++||+|++|+++|++|..|+++.
T Consensus        69 ---------~~~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVvd~~g~l~Giit~~Dll~~  121 (131)
T d2riha1          69 ---------AMPIANSPITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFE  121 (131)
T ss_dssp             ---------SGGGCBCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSC
T ss_pred             ---------cccccccceeEeeecchHHHHHHHHHCCeEEEEEEcCCCeEEEEEEHHHHHHH
Confidence                     11134467789999999999999999999999999999999999999999974

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.64  E-value=6.3e-18  Score=134.27  Aligned_cols=117  Identities=19%  Similarity=0.236  Sum_probs=60.4

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccccccc
Q 016866          155 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  234 (381)
Q Consensus       155 ~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i  234 (381)
                      |..+++++.|++++.+|+++|.+++++++||+|++...+   +++|++|.+|+.......          ...++...  
T Consensus         2 m~~~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~---~lvGivT~~Di~~~~~~~----------~~~~~~~~--   66 (120)
T d1jr1a4           2 FITDPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGS---RLVGIISSRDIDFLKEEE----------HDRFLEEI--   66 (120)
T ss_dssp             EECTTCC----CCCC--CCBC---------------CTT---CCC--------------------------------C--
T ss_pred             cccCCEEECCcCCHHHHHHHHHHhCCCeEEEeeccccCC---eEeeeeeeeeeeehhccc----------cCceeEEE--
Confidence            345567999999999999999999999999997533456   899999999985432211          11122211  


Q ss_pred             cccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHH
Q 016866          235 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL  294 (381)
Q Consensus       235 g~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l  294 (381)
                              ..+..+++++.+++++.+|+++|.+++++++||+|++|+++|+||++|+++.
T Consensus        67 --------~~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVVd~~~~lvGiiT~~Di~k~  118 (120)
T d1jr1a4          67 --------MTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNENDELVAIIARTDLKKN  118 (120)
T ss_dssp             --------CSBTTTSCCEETTCCHHHHHHHTCSCC---CEEEETTTEEEEEECHHHHHHH
T ss_pred             --------EeeccCceEECCCCCHHHHHHHHHHcCccEEEEEcCCCEEEEEEEHHHhhhc
Confidence                    1134578899999999999999999999999999999999999999999874

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2e-14  Score=120.60  Aligned_cols=134  Identities=10%  Similarity=0.106  Sum_probs=101.9

Q ss_pred             ceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCc----cc-cCcccccc
Q 016866          159 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLP----IL-QQPVSSIQ  233 (381)
Q Consensus       159 ~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~----~~-~~~i~~l~  233 (381)
                      .+.+.++.++.+|+++|.+++++++||+++ .+++   +++|++|.+|+++++............    .+ ........
T Consensus        19 ~v~~~~~~tv~~a~~ll~~~~~~~~PVV~~-~~~~---~lvG~is~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (169)
T d2j9la1          19 TVLTQDSMTVEDVETIISETTYSGFPVVVS-RESQ---RLVGFVLRRDLIISIENARKKQDGVVSTSIIYFTEHSPPLPP   94 (169)
T ss_dssp             CCEESSCEEHHHHHHHHHHCCCSEEEEESC-TTTC---BEEEEEEHHHHHHHHHHHHTSCSCCCTTCEEECSSSCCCCCT
T ss_pred             EEECCCcCCHHHHHHHHHHcCCCceeeeec-CCCC---eEEEEEEhHHHHHHHhcccccccccccchhhhhcccchhhhh
Confidence            355678889999999999999999999963 2356   899999999999988654322111000    00 01111112


Q ss_pred             ccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 016866          234 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  297 (381)
Q Consensus       234 ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~  297 (381)
                      .......++++|.++++++.+++++.+++++|.+++++++||+| +|+++|+||++|+++++.+
T Consensus        95 ~~~~~~~v~~im~~~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d-~g~lvGiIt~~Dil~~l~~  157 (169)
T d2j9la1          95 YTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIAQ  157 (169)
T ss_dssp             TCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHH
T ss_pred             ccccccchhhhccCCCEEECCCCcHHHHHHHHHhcCceEEEEEE-CCEEEEEEEHHHHHHHHHH
Confidence            22334467889999999999999999999999999999999987 7999999999999997763