Citrus Sinensis ID: 016882

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-
Protein Sequence
MATDPEQARARLSSFGKVGKSSGEIGSADEEPLIANGIRPSPENYSVSAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKVGSCTLFFMSNVYFFCICISYLII
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHcccHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHcHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHcccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccHHHHccccHHHHHHHHHHHHHHHHHHcccHHHHcHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHEccccccEcccEEccHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEHHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHcHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHccHHHHHHHHHHHHHHHHHHHcccEEEEEcHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MATDPEQARARLSSfgkvgkssgeigsadeepliangirpspenysvsaAILPflfpalggllygydigstscatisiesptlsgiswydlsSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVtalapdfiIMVVGRFVFGIGIGLAMhaapmyiaetaptpmrgqliSLKEFFIVLGMVGGYGIGSLLVDLVAGWrymygastPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCrlrgqsigdsaptEVDEILTELSyvgedkevslrEVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSagfsaasdATRVSILLGLFKVGSCTLFFMSNVYFFCICISYLII
Flexible Loop (DISEMBL)
MATDPEQARARLssfgkvgkssgeigsadeeplIANGIRPSPENYSVSAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRgqsigdsaptevDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKVGSCTLFFMSNVYFFCICISYLII
Low Complexity Region (SEG)
MATDPEQARARLSSFGKVGKSSGEIGSADEEPLIANGIRPSPENYSVSAAIlpflfpalggllygyDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRElilaallylvgalvtalaPDfiimvvgrfvfgigigLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKVGSCTLFFMSNVYFFCICISYLII
Disordered region (IsUnstruct)
********************************************YSVSAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKVGSCTLFFMSNVYFFCICISYLI*
Disordered Region (DISOPRED)
************************************************AAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKG**QDLRESAISCLCRLRGQSIGDSAPT*********************EVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKVGSCTLFFMSNVYFFCICISYLII
Disordered Region (DISEMBL)
***********************EIGSADEEPLIANGIRPSPENYSVSAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKVGSCTLFFMSNVYFFCICISYLII
Disordered Region (DISPRO)
*****************************************PENYSVSAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKVGSCTLFFMSNVYFFCICISYLII
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATDPEQARARLSSFGKVGKSSGEIGSADEEPLIANGIRPSPENYSVSAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKVGSCTLFFMSNVYFFCICISYLII
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	381	2.2.26 [Sep-21-2011]
Q6AWX0	503	D-xylose-proton symporter	no	no	0.931	0.705	0.723	1e-147
Q8L6Z8	503	D-xylose-proton symporter	no	no	0.929	0.703	0.674	1e-133
Q0WWW9	558	D-xylose-proton symporter	no	no	0.926	0.632	0.559	1e-109
Q9BE72	621	Solute carrier family 2,	N/A	no	0.732	0.449	0.336	7e-37
Q8TD20	617	Solute carrier family 2,	yes	no	0.732	0.452	0.336	1e-36
Q8BFW9	622	Solute carrier family 2,	yes	no	0.832	0.509	0.324	1e-34
Q5J316	621	Solute carrier family 2,	yes	no	0.732	0.449	0.326	2e-34
Q32NG5	588	Solute carrier family 2,	N/A	no	0.837	0.542	0.305	7e-34
C0SPB2	457	Putative metabolite trans	yes	no	0.703	0.586	0.315	8e-34
P30605	584	Myo-inositol transporter	yes	no	0.863	0.563	0.304	2e-33

>sp|Q6AWX0|XYLL2_ARATH D-xylose-proton symporter-like 2 OS=Arabidopsis thaliana GN=At5g17010 PE=1 SV=1

 Score =  521 bits (1341), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 259/358 (72%), Positives = 307/358 (85%), Gaps = 3/358 (0%)

Query: 1   MATDPEQARARLSSFGKVGKSSGEIGSADEEPLIANGIRPSPENYSVSAAILPFLFPALG 60
           MA DPEQ +   S   + GKSSGEI S + EPLI       PENYSV AAILPFLFPALG
Sbjct: 1   MALDPEQQQPISSVSREFGKSSGEI-SPEREPLIKE--NHVPENYSVVAAILPFLFPALG 57

Query: 61  GLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADI 120
           GLLYGY+IG+TSCATIS++SP+LSGISWY+LSSV++GL+TSGSLYGAL GSI+AF IAD+
Sbjct: 58  GLLYGYEIGATSCATISLQSPSLSGISWYNLSSVDVGLVTSGSLYGALFGSIVAFTIADV 117

Query: 121 LGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPM 180
           +GRR+ELILAALLYLVGALVTALAP + ++++GR ++G+ +GLAMHAAPMYIAETAP+P+
Sbjct: 118 IGRRKELILAALLYLVGALVTALAPTYSVLIIGRVIYGVSVGLAMHAAPMYIAETAPSPI 177

Query: 181 RGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRW 240
           RGQL+SLKEFFIVLGMVGGYGIGSL V++ +GWRYMY  S PLAVIMG+GMWWLPASPRW
Sbjct: 178 RGQLVSLKEFFIVLGMVGGYGIGSLTVNVHSGWRYMYATSVPLAVIMGIGMWWLPASPRW 237

Query: 241 LLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREV 300
           LLL  ++ KG++++ RE+AI  LC LRG +  DSA  +V+EIL EL++VGEDKEV+  E+
Sbjct: 238 LLLRVIQGKGNVENQREAAIKSLCCLRGPAFVDSAAEQVNEILAELTFVGEDKEVTFGEL 297

Query: 301 FHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKV 358
           F GKCLKALIIG GLVLFQQITGQPSVLYYA SILQ+AGFSAA DATRVSILLGL K+
Sbjct: 298 FQGKCLKALIIGGGLVLFQQITGQPSVLYYAPSILQTAGFSAAGDATRVSILLGLLKL 355

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L6Z8|XYLL1_ARATH D-xylose-proton symporter-like 1 OS=Arabidopsis thaliana GN=At3g03090 PE=2 SV=1

 Score =  476 bits (1225), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 242/359 (67%), Positives = 294/359 (81%), Gaps = 5/359 (1%)

Query: 1   MATDPEQARARLSSFGKV-GKSSGEIGSADEEPLIANGIRPSPENYSVSAAILPFLFPAL 59
           M  DPE     +SS G+V G SS    +A++EPL+      SPENYSV AAI PFLFPAL
Sbjct: 1   MGFDPENQS--ISSVGQVVGDSSSGGITAEKEPLLKE--NHSPENYSVLAAIPPFLFPAL 56

Query: 60  GGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIAD 119
           G LL+GY+IG+TSCA +S++SPTLSGISWYDLSSV++G+ITSGSLYGALIGSI+AF++AD
Sbjct: 57  GALLFGYEIGATSCAIMSLKSPTLSGISWYDLSSVDVGIITSGSLYGALIGSIVAFSVAD 116

Query: 120 ILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTP 179
           I+GRR+ELILAA LYLVGA+VT +AP F I+++GR  +G+GIGL MHAAPMYIAETAP+ 
Sbjct: 117 IIGRRKELILAAFLYLVGAIVTVVAPVFSILIIGRVTYGMGIGLTMHAAPMYIAETAPSQ 176

Query: 180 MRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPR 239
           +RG++ISLKEF  VLGMVGGYGIGSL + +++GWRYMY    P  VIMG GM WLPASPR
Sbjct: 177 IRGRMISLKEFSTVLGMVGGYGIGSLWITVISGWRYMYATILPFPVIMGTGMCWLPASPR 236

Query: 240 WLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLRE 299
           WLLL A++ +G+ ++L+++AI  LCRLRG  I DSA  +V+EIL ELS VGEDKE +  E
Sbjct: 237 WLLLRALQGQGNGENLQQAAIRSLCRLRGSVIADSAAEQVNEILAELSLVGEDKEATFGE 296

Query: 300 VFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKV 358
           +F GKCLKAL I  GLVLFQQITGQPSVLYYA SILQ+AGFSAA+DATR+SILLGL K+
Sbjct: 297 LFRGKCLKALTIAGGLVLFQQITGQPSVLYYAPSILQTAGFSAAADATRISILLGLLKL 355

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WWW9|XYLL3_ARATH D-xylose-proton symporter-like 3, chloroplastic OS=Arabidopsis thaliana GN=At5g59250 PE=1 SV=2

 Score =  395 bits (1016), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 202/361 (55%), Positives = 272/361 (75%), Gaps = 8/361 (2%)

Query: 3   TDPEQARARLSSFGKVG-KSSGEIGSADEEPLIANGI-RPSPENYSVSAAILPFLFPALG 60
           + P     R     +VG ++ GE   + E   +A+ +   +PE++S S+ ILPF+FPALG
Sbjct: 52  SKPGLVTTRYRHIFQVGAETGGEFADSGE---VADSLASDAPESFSWSSVILPFIFPALG 108

Query: 61  GLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADI 120
           GLL+GYDIG+TS AT+S++SP LSG +W++ S V++GL+ SGSLYGAL+GSI  + +AD 
Sbjct: 109 GLLFGYDIGATSGATLSLQSPALSGTTWFNFSPVQLGLVVSGSLYGALLGSISVYGVADF 168

Query: 121 LGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPM 180
           LGRRRELI+AA+LYL+G+L+T  APD  I++VGR ++G GIGLAMH AP+YIAET P+ +
Sbjct: 169 LGRRRELIIAAVLYLLGSLITGCAPDLNILLVGRLLYGFGIGLAMHGAPLYIAETCPSQI 228

Query: 181 RGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRW 240
           RG LISLKE FIVLG++ G+ +GS  +D+V GWRYMYG  TP+A++MG+GMW LPASPRW
Sbjct: 229 RGTLISLKELFIVLGILLGFSVGSFQIDVVGGWRYMYGFGTPVALLMGLGMWSLPASPRW 288

Query: 241 LLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTE-VDEILTELSYVGEDKEV--SL 297
           LLL A++ KG +Q+ +E A+  L +LRG+  GD    + VD+    +    ED++   + 
Sbjct: 289 LLLRAVQGKGQLQEYKEKAMLALSKLRGRPPGDKISEKLVDDAYLSVKTAYEDEKSGGNF 348

Query: 298 REVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFK 357
            EVF G  LKAL IG GLVLFQQITGQPSVLYYA SILQ+AGFSAA+DATRVS+++G+FK
Sbjct: 349 LEVFQGPNLKALTIGGGLVLFQQITGQPSVLYYAGSILQTAGFSAAADATRVSVIIGVFK 408

Query: 358 V 358
           +
Sbjct: 409 L 409

Arabidopsis thaliana (taxid: 3702)

>sp|Q9BE72|GTR12_MACFA Solute carrier family 2, facilitated glucose transporter member 12 OS=Macaca fascicularis GN=SLC2A12 PE=2 SV=1

 Score =  154 bits (390), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 102/303 (33%), Positives = 164/303 (54%), Gaps = 24/303 (7%)

Query: 58  ALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNI 117
           A+ GLL GY++G  S A + I++          LS  E  ++ S  L GAL+ S+    +
Sbjct: 52  AVSGLLVGYELGIISGALLQIKT-------LLTLSCHEQEMVVSSLLIGALLASLTGGVL 104

Query: 118 ADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAP 177
            D  GRR  +IL++ L  +G+LV  L+  + +++VGR   G+ I L+  A  +YIAE AP
Sbjct: 105 IDRYGRRTAIILSSCLLGLGSLVLILSLSYTVLIVGRIAIGVSISLSSIATCVYIAEIAP 164

Query: 178 TPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPAS 237
              RG L+SL E  IV+G++  Y       ++  GW+YM+G   PL ++  + M++LP S
Sbjct: 165 QHRRGLLVSLNELMIVIGILSAYISNYAFANVFHGWKYMFGLVIPLGILQAIAMYFLPPS 224

Query: 238 PRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSL 297
           PR+L+         M+    +A   L RLR  S         +E+    S + ++ + S 
Sbjct: 225 PRFLV---------MKGQEGAASKVLGRLRALS------DATEELTVIKSSLKDEYQYSF 269

Query: 298 REVFHGK--CLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGL 355
            ++F  K      ++IG  LV F QITGQP++L+YA+++L+S GF +   A+  S  +G+
Sbjct: 270 WDLFRSKDNMRTRIMIGLTLVFFVQITGQPNILFYASTVLKSVGFQSNEAASLASTGVGV 329

Query: 356 FKV 358
            KV
Sbjct: 330 VKV 332

Facilitative glucose transporter.

Macaca fascicularis (taxid: 9541)

>sp|Q8TD20|GTR12_HUMAN Solute carrier family 2, facilitated glucose transporter member 12 OS=Homo sapiens GN=SLC2A12 PE=2 SV=1

 Score =  154 bits (388), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 102/303 (33%), Positives = 164/303 (54%), Gaps = 24/303 (7%)

Query: 58  ALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNI 117
           A+ GLL GY++G  S A + I++          LS  E  ++ S  + GAL+ S+    +
Sbjct: 48  AVSGLLVGYELGIISGALLQIKT-------LLALSCHEQEMVVSSLVIGALLASLTGGVL 100

Query: 118 ADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAP 177
            D  GRR  +IL++ L  +G+LV  L+  + +++VGR   G+ I L+  A  +YIAE AP
Sbjct: 101 IDRYGRRTAIILSSCLLGLGSLVLILSLSYTVLIVGRIAIGVSISLSSIATCVYIAEIAP 160

Query: 178 TPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPAS 237
              RG L+SL E  IV+G++  Y       ++  GW+YM+G   PL V+  + M++LP S
Sbjct: 161 QHRRGLLVSLNELMIVIGILSAYISNYAFANVFHGWKYMFGLVIPLGVLQAIAMYFLPPS 220

Query: 238 PRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSL 297
           PR+L+         M+    +A   L RLR  S         +E+    S + ++ + S 
Sbjct: 221 PRFLV---------MKGQEGAASKVLGRLRALS------DTTEELTVIKSSLKDEYQYSF 265

Query: 298 REVFHGK--CLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGL 355
            ++F  K      ++IG  LV F QITGQP++L+YA+++L+S GF +   A+  S  +G+
Sbjct: 266 WDLFRSKDNMRTRIMIGLTLVFFVQITGQPNILFYASTVLKSVGFQSNEAASLASTGVGV 325

Query: 356 FKV 358
            KV
Sbjct: 326 VKV 328

Facilitative glucose transporter.

Homo sapiens (taxid: 9606)

>sp|Q8BFW9|GTR12_MOUSE Solute carrier family 2, facilitated glucose transporter member 12 OS=Mus musculus GN=Slc2a12 PE=2 SV=1

 Score =  147 bits (372), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 115/354 (32%), Positives = 183/354 (51%), Gaps = 37/354 (10%)

Query: 12  LSSFGKVGKSSGEIG-SADEEPLIANGIRPSPENY--SVSAAILPFLFPALGGLLYGYDI 68
           L+  G+  ++ G  G S    P  A G  PS   +  SV+AAI         GLL GY++
Sbjct: 13  LNQKGREAETEGSCGASGGGHPACAGG--PSMFTFLTSVTAAI--------SGLLVGYEL 62

Query: 69  GSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELI 128
           G  S A + I +          L+  E  ++ S  L GA + S+    + D  GRR  +I
Sbjct: 63  GLISGALLQIRT-------LLALTCHEQEMVVSSLLIGAFLASLTGGVLIDRYGRRLAII 115

Query: 129 LAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLK 188
           L++ L  +G+LV  ++  + ++++GR   G+ I L+  A  +YIAE AP   RG L+SL 
Sbjct: 116 LSSCLLGLGSLVLIMSLSYTLLIMGRVAIGVSISLSSIATCVYIAEIAPQHRRGLLVSLN 175

Query: 189 EFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKR 248
           E  IV G++  Y       ++  GW+YM+G   PL V+  + M++LP SPR+L+      
Sbjct: 176 ELMIVTGILFAYISNYAFANISNGWKYMFGLVIPLGVLQAIAMYFLPPSPRFLV------ 229

Query: 249 KGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGK--CL 306
              M+   ESA   L +LR   I D+     +E+    S + ++ + S  ++F  K    
Sbjct: 230 ---MKGQEESAGKVLRKLR--VISDTT----EELTLIKSSLKDEYQYSFWDLFRSKDNMR 280

Query: 307 KALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKVGS 360
             ++IG  LV F Q TGQP++L+YA+++L+S GF +   A+  S  +G+ KV S
Sbjct: 281 TRILIGLTLVFFVQTTGQPNILFYASTVLKSVGFQSNEAASLASTGVGVVKVVS 334

Facilitative glucose transporter.

Mus musculus (taxid: 10090)

>sp|Q5J316|GTR12_BOVIN Solute carrier family 2, facilitated glucose transporter member 12 OS=Bos taurus GN=SLC2A12 PE=1 SV=1

 Score =  147 bits (370), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/303 (32%), Positives = 166/303 (54%), Gaps = 24/303 (7%)

Query: 58  ALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNI 117
           A+ G L GY++G  S A + I +  +       L+  E  ++ S  L GAL+ S++   +
Sbjct: 52  AVSGFLVGYELGIISGALLQIRTLLV-------LTCHEQEMVVSSLLIGALLASLIGGVL 104

Query: 118 ADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAP 177
            D  GRR  +IL++ L  +G+LV  ++  +  ++ GR   G+ I L+  A  +YIAE AP
Sbjct: 105 IDRYGRRAAIILSSCLLGLGSLVLIISLSYTTLIGGRIAIGVFISLSSTATCVYIAEIAP 164

Query: 178 TPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPAS 237
              RG L+SL E  IV+G++  Y       ++  GW+YM+G   PL V+  + M++LP S
Sbjct: 165 QHRRGLLVSLNELMIVIGILFAYISNYAFANISHGWKYMFGLVIPLGVLQAIAMYFLPPS 224

Query: 238 PRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSL 297
           PR+L+         M+   E+A   L +LR  ++ D+     +E+    S + ++ + S 
Sbjct: 225 PRFLV---------MKGHEEAASKVLGKLR--AVLDTT----EELTVIKSSLKDEYQYSF 269

Query: 298 REVFHGK--CLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGL 355
            ++F  K      ++IG  LV F QITGQP++L+YA+++L+S GF +   A+  S  +G+
Sbjct: 270 WDLFRSKDNMRTRIMIGLTLVFFVQITGQPNILFYASTVLKSVGFQSNEAASLASTGVGV 329

Query: 356 FKV 358
            KV
Sbjct: 330 VKV 332

Facilitative glucose transporter.

Bos taurus (taxid: 9913)

>sp|Q32NG5|GTR12_XENLA Solute carrier family 2, facilitated glucose transporter member 12 OS=Xenopus laevis GN=slc2a12 PE=2 SV=1

 Score =  145 bits (365), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 109/357 (30%), Positives = 184/357 (51%), Gaps = 38/357 (10%)

Query: 27  SADEEPLIANGIRPSPENYSVSA-AILPFLFPALGGLLYGYDIGSTSCATISIESPTLSG 85
           S+D+ P      + +P      A  IL  +  A+ GLL GY++G  S A + ++S     
Sbjct: 16  SSDDHP------QTNPRQTGCGAFIILSSVIAAISGLLVGYELGIISGALLQLQSLLELT 69

Query: 86  ISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAP 145
               ++       + S  L GAL+ S++   + D+ GRR  +I  ++L +   L+  +  
Sbjct: 70  CQQQEI-------VVSALLIGALVASLVGGCLIDLYGRRTTIIFTSILLVFANLLPVVVV 122

Query: 146 DFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSL 205
            +  ++ GR   G+ I L+  A  +YIAE +P   RG L+SL E  IV G++  Y    L
Sbjct: 123 SYGSLIAGRIFIGVSISLSAIATCVYIAELSPQDKRGMLVSLNELMIVAGILLAYICNYL 182

Query: 206 LVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCR 265
              +  GW+YM+G  TPLA +  + M++LP SPR+L+         M+   ++A   L +
Sbjct: 183 FASVNNGWKYMFGLITPLAALQAVAMFFLPRSPRFLI---------MKGYDDAAGKVLQK 233

Query: 266 LRGQSIGDSAPTEVDEILTEL-SYVGEDKEVSLREVFHGK-CLKA-LIIGAGLVLFQQIT 322
           LR       A T+++E LT + S +  + +    ++F  +  ++A L+IG  L  F QIT
Sbjct: 234 LR-------ATTDINEELTAIKSSIKAEYQYKFLDLFCSRDNMRARLLIGLTLSFFVQIT 286

Query: 323 GQPSVLYYAASILQSAGFSAASDATRVSILLGLFKVGSC--TLFFMSNV---YFFCI 374
           GQP++L+YA+++L+S GF +   A+  S  +G+ KV S    +F +  +    F CI
Sbjct: 287 GQPNILFYASTVLKSVGFQSTEAASLASTGIGVVKVVSTIPAIFLVDKIGSKTFLCI 343

Facilitative glucose transporter.

Xenopus laevis (taxid: 8355)

>sp|C0SPB2|YWTG_BACSU Putative metabolite transport protein YwtG OS=Bacillus subtilis (strain 168) GN=ywtG PE=3 SV=1

 Score =  144 bits (364), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 92/292 (31%), Positives = 151/292 (51%), Gaps = 24/292 (8%)

Query: 54  FLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSIL 113
           + F ALGG LYGYD G  S A + ++           L++   GL+ S  L GA++GS  
Sbjct: 10  YFFGALGGALYGYDTGVISGAILFMKKE-------LGLNAFTEGLVVSSLLVGAILGSGA 62

Query: 114 AFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIA 173
           A  + D  GR++ ++ AALL+ +G L  ALAP+  +MV+ R + G+ +G +    P+Y++
Sbjct: 63  AGKLTDRFGRKKAIMAAALLFCIGGLGVALAPNTGVMVLFRIILGLAVGTSTTIVPLYLS 122

Query: 174 ETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW 233
           E AP   RG L SL +  I +G++  Y +  +  D  A WR+M G +   ++++ +G+ +
Sbjct: 123 ELAPKHKRGALSSLNQLMITVGILLSYIVNYIFADAEA-WRWMLGLAAVPSLLLLIGILF 181

Query: 234 LPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDK 293
           +P SPRWL     + K         A   L +LRG         ++D+ + ++    +  
Sbjct: 182 MPESPRWLFTNGEESK---------AKKILEKLRGTK-------DIDQEIHDIKEAEKQD 225

Query: 294 EVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASD 345
           E  L+E+F      ALI G GL   QQ  G  +++YYA     + GF  ++ 
Sbjct: 226 EGGLKELFDPWVRPALIAGLGLAFLQQFIGTNTIIYYAPKTFTNVGFGNSAS 277

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|P30605|ITR1_YEAST Myo-inositol transporter 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ITR1 PE=1 SV=2

 Score =  143 bits (361), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 119/391 (30%), Positives = 188/391 (48%), Gaps = 62/391 (15%)

Query: 13  SSFGKVGKSSGEIGSA---DEEPLIANGIRPSPE----------NYSVSAAILPFLFPA- 58
           S  GK+   S EI  A   D+E  I   I+P  +          N S+S  I+   F A 
Sbjct: 37  SKRGKITLESHEIQRAPASDDEDRIQ--IKPVNDEDDTSVMITFNQSLSPFIITLTFVAS 94

Query: 59  LGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIA 118
           + G ++GYD G  S A ISI +     +  Y     E  ++T+ +  GALI SI A   A
Sbjct: 95  ISGFMFGYDTGYISSALISIGTDLDHKVLTYG----EKEIVTAATSLGALITSIFAGTAA 150

Query: 119 DILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPT 178
           DI GR+R L+ + L++++GA++   A  F  M VGR + G G+G+    AP++I+E AP 
Sbjct: 151 DIFGRKRCLMGSNLMFVIGAILQVSAHTFWQMAVGRLIMGFGVGIGSLIAPLFISEIAPK 210

Query: 179 PMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASP 238
            +RG+L  +   ++  G +  YG G+ L  +  GWR + G S     +    + +LP +P
Sbjct: 211 MIRGRLTVINSLWLTGGQLVAYGCGAGLNYVNNGWRILVGLSLIPTAVQFTCLCFLPDTP 270

Query: 239 RWLLLCAMKRKGDM---------------QDLRESAISCLCRLRGQSIGDSAPTEVDEIL 283
           R+ ++     KGD+               +++ E  +  L  L     G + P +V   +
Sbjct: 271 RYYVM-----KGDLARATEVLKRSYTDTSEEIIERKVEELVTLNQSIPGKNVPEKVWNTI 325

Query: 284 TELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAA 343
            EL  V  +             L+ALIIG GL   QQ TG  S++Y++ +I ++ GF   
Sbjct: 326 KELHTVPSN-------------LRALIIGCGLQAIQQFTGWNSLMYFSGTIFETVGF--- 369

Query: 344 SDATRVSILLGLFKVGSCTLFFMSNVYFFCI 374
            +++ VSI++      S T F  + V FF I
Sbjct: 370 KNSSAVSIIV------SGTNFIFTLVAFFSI 394

Major transporter for myo-inositol.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	381
224144970	502	predicted protein [Populus trichocarpa]	0.929	0.705	0.835	1e-164
118486465	502	unknown [Populus trichocarpa]	0.929	0.705	0.835	1e-164
255557987	502	sugar transporter, putative [Ricinus com	0.923	0.701	0.773	1e-153
356538461	501	PREDICTED: D-xylose-proton symporter-lik	0.926	0.704	0.759	1e-149
357474255	501	D-xylose-proton symporter-like protein [	0.926	0.704	0.731	1e-148
388501928	501	unknown [Medicago truncatula]	0.926	0.704	0.729	1e-148
449526179	459	PREDICTED: D-xylose-proton symporter-lik	0.905	0.751	0.746	1e-147
449438795	502	PREDICTED: D-xylose-proton symporter-lik	0.905	0.687	0.746	1e-147
297811841	502	sugar transporter family protein [Arabid	0.926	0.703	0.729	1e-147
225454803	500	PREDICTED: D-xylose-proton symporter-lik	0.918	0.7	0.794	1e-146

>gi|224144970|ref|XP_002325479.1| predicted protein [Populus trichocarpa] gi|222862354|gb|EEE99860.1| predicted protein [Populus trichocarpa]

 Score =  583 bits (1504), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 299/358 (83%), Positives = 325/358 (90%), Gaps = 4/358 (1%)

Query: 1   MATDPEQARARLSSFGKVGKSSGEIGSADEEPLIANGIRPSPENYSVSAAILPFLFPALG 60
           MA DPEQ    LSS GKVGKSSGEIG   EEPL+  GI  S ENYS+++AI PFLFPALG
Sbjct: 1   MAPDPEQPT--LSSLGKVGKSSGEIGGV-EEPLLNGGIHTS-ENYSLASAIFPFLFPALG 56

Query: 61  GLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADI 120
           GLLYGYDIGSTSCATISI+S TLSGISWY+L+SV+IGLITSGSLYGALIGS+LAFNIAD 
Sbjct: 57  GLLYGYDIGSTSCATISIQSATLSGISWYNLNSVDIGLITSGSLYGALIGSVLAFNIADF 116

Query: 121 LGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPM 180
           LGRRRELILAA LYLVGALVTALAP F +MV+GRFVFGIGIGLAMHAAPMYIAETAP+ +
Sbjct: 117 LGRRRELILAAFLYLVGALVTALAPAFAVMVIGRFVFGIGIGLAMHAAPMYIAETAPSHI 176

Query: 181 RGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRW 240
           RGQLISLKEFFIVLGMVGGYGIGSLLVD VAGWRYMY ASTPLAVIMG+GMWWLPASPRW
Sbjct: 177 RGQLISLKEFFIVLGMVGGYGIGSLLVDTVAGWRYMYVASTPLAVIMGIGMWWLPASPRW 236

Query: 241 LLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREV 300
           LLL A++ KG MQ+LRE+AI CLCRLRG++IGD+AP +VDEIL EL+ VGE+KEV+L EV
Sbjct: 237 LLLRAIQGKGSMQELRETAICCLCRLRGEAIGDTAPAKVDEILAELAVVGEEKEVTLAEV 296

Query: 301 FHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKV 358
           F GKCLKAL IGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFK+
Sbjct: 297 FRGKCLKALTIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKL 354

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486465|gb|ABK95072.1| unknown [Populus trichocarpa]

 Score =  582 bits (1500), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 299/358 (83%), Positives = 324/358 (90%), Gaps = 4/358 (1%)

Query: 1   MATDPEQARARLSSFGKVGKSSGEIGSADEEPLIANGIRPSPENYSVSAAILPFLFPALG 60
           MA DPEQ    LSS GKVGKSSGEIG   EEPL+  GI  S ENYS+ +AI PFLFPALG
Sbjct: 1   MAPDPEQPT--LSSLGKVGKSSGEIGGV-EEPLLNGGIHTS-ENYSLVSAIFPFLFPALG 56

Query: 61  GLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADI 120
           GLLYGYDIGSTSCATISI+S TLSGISWY+L+SV+IGLITSGSLYGALIGS+LAFNIAD 
Sbjct: 57  GLLYGYDIGSTSCATISIKSATLSGISWYNLNSVDIGLITSGSLYGALIGSVLAFNIADF 116

Query: 121 LGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPM 180
           LGRRRELILAA LYLVGALVTALAP F +MV+GRFVFGIGIGLAMHAAPMYIAETAP+ +
Sbjct: 117 LGRRRELILAAFLYLVGALVTALAPAFAVMVIGRFVFGIGIGLAMHAAPMYIAETAPSHI 176

Query: 181 RGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRW 240
           RGQLISLKEFFIVLGMVGGYGIGSLLVD VAGWRYMY ASTPLAVIMG+GMWWLPASPRW
Sbjct: 177 RGQLISLKEFFIVLGMVGGYGIGSLLVDTVAGWRYMYVASTPLAVIMGIGMWWLPASPRW 236

Query: 241 LLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREV 300
           LLL A++ KG MQ+LRE+AI CLCRLRG++IGD+AP +VDEIL EL+ VGE+KEV+L EV
Sbjct: 237 LLLRAIQGKGSMQELRETAICCLCRLRGEAIGDTAPAKVDEILAELAVVGEEKEVTLAEV 296

Query: 301 FHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKV 358
           F GKCLKAL IGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFK+
Sbjct: 297 FRGKCLKALTIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKL 354

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557987|ref|XP_002520022.1| sugar transporter, putative [Ricinus communis] gi|223540786|gb|EEF42346.1| sugar transporter, putative [Ricinus communis]

 Score =  548 bits (1411), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 276/357 (77%), Positives = 317/357 (88%), Gaps = 5/357 (1%)

Query: 2   ATDPEQARARLSSFGKVGKSSGEIGSADEEPLIANGIRPSPENYSVSAAILPFLFPALGG 61
           ATD EQ     SS GKVGKSSGEI  A EEPL+  G   S E YS+ AA+LPFLFPALGG
Sbjct: 3   ATDLEQPS--FSSLGKVGKSSGEIDGA-EEPLLNGG--SSSEYYSILAAVLPFLFPALGG 57

Query: 62  LLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADIL 121
           LLYGYDIG+TSCATI+IES T SGISWY+L++V++GLITSGSLYGALIGS++AFNIAD L
Sbjct: 58  LLYGYDIGATSCATITIESATSSGISWYNLNAVQLGLITSGSLYGALIGSVVAFNIADFL 117

Query: 122 GRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMR 181
           GRRRELI+AALLYLVGALVT LAPDF++MV+GRFV+GIGIGLAMHAAPMYIAETAP+ +R
Sbjct: 118 GRRRELIVAALLYLVGALVTGLAPDFVVMVIGRFVYGIGIGLAMHAAPMYIAETAPSQIR 177

Query: 182 GQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWL 241
           G+LISLKEFFIVLGMV GYG+GSLLVD+V GWRYMY AS PLAVIMG+GMW LP SPRW+
Sbjct: 178 GRLISLKEFFIVLGMVAGYGVGSLLVDIVRGWRYMYVASAPLAVIMGVGMWCLPQSPRWI 237

Query: 242 LLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVF 301
           LLCAM+ KG+MQDL+E+AI CLC+LRG +IGD+AP  V+E+L+EL++VGE+KE SLR++F
Sbjct: 238 LLCAMQGKGNMQDLKETAICCLCKLRGGAIGDAAPALVEEMLSELAFVGEEKETSLRDLF 297

Query: 302 HGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKV 358
            GKCLKAL IGAGLV+FQQITGQPSVLYYA SI QSAGFSAASDATRVSILLGL K+
Sbjct: 298 KGKCLKALTIGAGLVIFQQITGQPSVLYYAGSIFQSAGFSAASDATRVSILLGLLKL 354

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538461|ref|XP_003537722.1| PREDICTED: D-xylose-proton symporter-like 2-like [Glycine max]

 Score =  533 bits (1374), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 272/358 (75%), Positives = 313/358 (87%), Gaps = 5/358 (1%)

Query: 1   MATDPEQARARLSSFGKVGKSSGEIGSADEEPLIANGIRPSPENYSVSAAILPFLFPALG 60
           MA+DPEQ     SSF K  +S GEIGSA E PL+ NG+  S E+YSVSAAILPFLFPALG
Sbjct: 1   MASDPEQPAH--SSFAKEARSGGEIGSAIE-PLL-NGVHDS-ESYSVSAAILPFLFPALG 55

Query: 61  GLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADI 120
           GLL+GYDIG+TS ATISI+SPTLSG+SWY LSSVEIGL+TSGSLYGALIGS+LAFN+AD 
Sbjct: 56  GLLFGYDIGATSSATISIQSPTLSGVSWYKLSSVEIGLLTSGSLYGALIGSLLAFNVADF 115

Query: 121 LGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPM 180
           LGRR+ELI AA++YLVGALVTALAP+F ++V+GR VFGIGIGLAMHAAPMYIAETAPTP+
Sbjct: 116 LGRRKELIGAAVVYLVGALVTALAPNFPVLVLGRLVFGIGIGLAMHAAPMYIAETAPTPI 175

Query: 181 RGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRW 240
           RGQLISLKEFFIVLGMV GYGIGSL V+ V+GWRYMYG S+P+A+IMG+GMWWLPASPRW
Sbjct: 176 RGQLISLKEFFIVLGMVAGYGIGSLFVETVSGWRYMYGVSSPVAIIMGVGMWWLPASPRW 235

Query: 241 LLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREV 300
           LLL A++ KGD+Q+ ++ AI  LC+LRGQ+  DS P +VDEIL ELSY+GE+KE +  E+
Sbjct: 236 LLLRAIQGKGDVQNSKDIAIRSLCQLRGQAFYDSVPWQVDEILAELSYLGEEKEATFGEL 295

Query: 301 FHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKV 358
           F GKCLKAL IG+GLVLFQQITGQPSVLYYA SI QSAGFS ASDATRVSILLG FK+
Sbjct: 296 FQGKCLKALWIGSGLVLFQQITGQPSVLYYAGSIFQSAGFSGASDATRVSILLGFFKL 353

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357474255|ref|XP_003607412.1| D-xylose-proton symporter-like protein [Medicago truncatula] gi|357474261|ref|XP_003607415.1| D-xylose-proton symporter-like protein [Medicago truncatula] gi|355508467|gb|AES89609.1| D-xylose-proton symporter-like protein [Medicago truncatula] gi|355508470|gb|AES89612.1| D-xylose-proton symporter-like protein [Medicago truncatula]

 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 262/358 (73%), Positives = 317/358 (88%), Gaps = 5/358 (1%)

Query: 1   MATDPEQARARLSSFGKVGKSSGEIGSADEEPLIANGIRPSPENYSVSAAILPFLFPALG 60
           MA+DPEQ    LSSF + GKSS E+ S + EPL+ NGI   P++YS+SAAILPFLFPA G
Sbjct: 1   MASDPEQPP--LSSFSQEGKSSTEVRS-EREPLL-NGIH-VPQDYSLSAAILPFLFPAFG 55

Query: 61  GLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADI 120
           GLL+GYDIG+TS ATISI+S +LSGI+WYDL +VEIGL+TSGSLYGALIGS+LAFNIAD 
Sbjct: 56  GLLFGYDIGATSSATISIQSSSLSGITWYDLDAVEIGLLTSGSLYGALIGSVLAFNIADF 115

Query: 121 LGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPM 180
           LGRRREL++AAL+YLVGAL+TA AP+F ++V+GR VFGIGIGLAMHAAPMYIAETAPTP+
Sbjct: 116 LGRRRELLVAALMYLVGALITAFAPNFPLLVIGRLVFGIGIGLAMHAAPMYIAETAPTPI 175

Query: 181 RGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRW 240
           RGQL+SLKEFFIV+G+V GYG+GSLLVD VAGWRYM+G S+P+AVIMG GMWWLPASPRW
Sbjct: 176 RGQLVSLKEFFIVIGIVAGYGLGSLLVDTVAGWRYMFGISSPVAVIMGFGMWWLPASPRW 235

Query: 241 LLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREV 300
           +LL A+++KGD+Q L+++AI  LC+L+G++  DSAP +VDEI+ E SY+GE+ +V+L E+
Sbjct: 236 ILLRAIQKKGDLQTLKDTAIRSLCQLQGRTFHDSAPQQVDEIMAEFSYLGEENDVTLGEM 295

Query: 301 FHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKV 358
           F GKC KAL+I AGLVLFQQITGQPSVLYYAASILQSAGFS A+DATRVSILLG+FK+
Sbjct: 296 FRGKCRKALVISAGLVLFQQITGQPSVLYYAASILQSAGFSLAADATRVSILLGVFKL 353

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501928|gb|AFK39030.1| unknown [Medicago truncatula]

 Score =  530 bits (1365), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 261/358 (72%), Positives = 317/358 (88%), Gaps = 5/358 (1%)

Query: 1   MATDPEQARARLSSFGKVGKSSGEIGSADEEPLIANGIRPSPENYSVSAAILPFLFPALG 60
           MA+DPEQ    LSSF + GKSS E+ S + EPL+ NGI   P++YS+SAAILPFLFPA G
Sbjct: 1   MASDPEQPP--LSSFSQEGKSSTEVRS-EREPLL-NGIH-VPQDYSLSAAILPFLFPAFG 55

Query: 61  GLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADI 120
           GLL+GYDIG+TS ATISI+S +LSGI+WYDL +VEIGL+TSGSLYGALIGS+LAFNIAD 
Sbjct: 56  GLLFGYDIGATSSATISIQSSSLSGITWYDLDAVEIGLLTSGSLYGALIGSVLAFNIADF 115

Query: 121 LGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPM 180
           LGRRREL++AAL+YLVGAL+TA AP+F ++++GR VFGIGIGLAMHAAPMYIAETAPTP+
Sbjct: 116 LGRRRELLVAALMYLVGALITAFAPNFPLLLIGRLVFGIGIGLAMHAAPMYIAETAPTPI 175

Query: 181 RGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRW 240
           RGQL+SLKEFFIV+G+V GYG+GSLLVD VAGWRYM+G S+P+AVIMG GMWWLPASPRW
Sbjct: 176 RGQLVSLKEFFIVIGIVAGYGLGSLLVDTVAGWRYMFGISSPVAVIMGFGMWWLPASPRW 235

Query: 241 LLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREV 300
           +LL A+++KGD+Q L+++AI  LC+L+G++  DSAP +VDEI+ E SY+GE+ +V+L E+
Sbjct: 236 ILLRAIQKKGDLQTLKDTAIRSLCQLQGRTFHDSAPQQVDEIMAEFSYLGEENDVTLGEM 295

Query: 301 FHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKV 358
           F GKC KAL+I AGLVLFQQITGQPSVLYYAASILQSAGFS A+DATRVSILLG+FK+
Sbjct: 296 FRGKCRKALVISAGLVLFQQITGQPSVLYYAASILQSAGFSLAADATRVSILLGVFKL 353

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449526179|ref|XP_004170091.1| PREDICTED: D-xylose-proton symporter-like 2-like, partial [Cucumis sativus]

 Score =  529 bits (1362), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 259/347 (74%), Positives = 310/347 (89%), Gaps = 2/347 (0%)

Query: 12  LSSFGKVGKSSGEIGSADEEPLIANGIRPSPENYSVSAAILPFLFPALGGLLYGYDIGST 71
           LSS GKVG+SSGEI +  EEPLI+   + S EN+S  AAILPFLFPALGGLLYGYDIG+T
Sbjct: 10  LSSLGKVGQSSGEIDNV-EEPLISVEFKHS-ENFSARAAILPFLFPALGGLLYGYDIGAT 67

Query: 72  SCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAA 131
           SCATIS++S + SGISWY+LSSVE+GL+TSGSLYGALIGS+LAFN+AD LGRRRELIL+A
Sbjct: 68  SCATISLQSASSSGISWYNLSSVEVGLVTSGSLYGALIGSVLAFNVADFLGRRRELILSA 127

Query: 132 LLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFF 191
           L+YLVGA++T LAP+F+I+++GR + G GIGLAMHAAPMYIAET+P+ +RGQ+ISLKEFF
Sbjct: 128 LMYLVGAIITGLAPNFVILIIGRIISGTGIGLAMHAAPMYIAETSPSKIRGQMISLKEFF 187

Query: 192 IVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGD 251
           IVLGMV GY IGSLLV++VAGWRY+Y A+TP+A++MG+GMWWLP+SPRWLLLCA++RKG+
Sbjct: 188 IVLGMVLGYSIGSLLVEVVAGWRYIYAANTPIALVMGVGMWWLPSSPRWLLLCAIQRKGN 247

Query: 252 MQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALII 311
           M DL+E AISCL RLRG  IG++A  EV+EIL ELS++GE +E S+ E+F GKCLKALII
Sbjct: 248 MADLKERAISCLHRLRGAVIGETASEEVNEILEELSFLGESEEASIGEIFQGKCLKALII 307

Query: 312 GAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKV 358
           GAGLVLFQQITGQPSVLYYA SI QSAGFSAA+DATRVSILLGL K+
Sbjct: 308 GAGLVLFQQITGQPSVLYYAPSIFQSAGFSAAADATRVSILLGLLKL 354

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438795|ref|XP_004137173.1| PREDICTED: D-xylose-proton symporter-like 2-like [Cucumis sativus]

 Score =  529 bits (1362), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 259/347 (74%), Positives = 310/347 (89%), Gaps = 2/347 (0%)

Query: 12  LSSFGKVGKSSGEIGSADEEPLIANGIRPSPENYSVSAAILPFLFPALGGLLYGYDIGST 71
           LSS GKVG+SSGEI +  EEPLI+   + S EN+S  AAILPFLFPALGGLLYGYDIG+T
Sbjct: 10  LSSLGKVGQSSGEIDNV-EEPLISVEFKHS-ENFSARAAILPFLFPALGGLLYGYDIGAT 67

Query: 72  SCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAA 131
           SCATIS++S + SGISWY+LSSVE+GL+TSGSLYGALIGS+LAFN+AD LGRRRELIL+A
Sbjct: 68  SCATISLQSASSSGISWYNLSSVEVGLVTSGSLYGALIGSVLAFNVADFLGRRRELILSA 127

Query: 132 LLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFF 191
           L+YLVGA++T LAP+F+I+++GR + G GIGLAMHAAPMYIAET+P+ +RGQ+ISLKEFF
Sbjct: 128 LMYLVGAIITGLAPNFVILIIGRIISGTGIGLAMHAAPMYIAETSPSKIRGQMISLKEFF 187

Query: 192 IVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGD 251
           IVLGMV GY IGSLLV++VAGWRY+Y A+TP+A++MG+GMWWLP+SPRWLLLCA++RKG+
Sbjct: 188 IVLGMVLGYSIGSLLVEVVAGWRYIYAANTPIALVMGVGMWWLPSSPRWLLLCAIQRKGN 247

Query: 252 MQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALII 311
           M DL+E AISCL RLRG  IG++A  EV+EIL ELS++GE +E S+ E+F GKCLKALII
Sbjct: 248 MADLKERAISCLHRLRGAVIGETASEEVNEILEELSFLGESEEASIGEIFQGKCLKALII 307

Query: 312 GAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKV 358
           GAGLVLFQQITGQPSVLYYA SI QSAGFSAA+DATRVSILLGL K+
Sbjct: 308 GAGLVLFQQITGQPSVLYYAPSIFQSAGFSAAADATRVSILLGLLKL 354

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811841|ref|XP_002873804.1| sugar transporter family protein [Arabidopsis lyrata subsp. lyrata] gi|297319641|gb|EFH50063.1| sugar transporter family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  526 bits (1354), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 262/359 (72%), Positives = 310/359 (86%), Gaps = 6/359 (1%)

Query: 1   MATDPEQARARLSSFGK-VGKSSGEIGSADEEPLIANGIRPSPENYSVSAAILPFLFPAL 59
           MA DPEQ    +SS  + VGKS GEI SA+ EPLI      +PENYSV AAILPF FPAL
Sbjct: 1   MALDPEQQP--ISSVSREVGKSDGEI-SAEREPLIKE--NHTPENYSVVAAILPFFFPAL 55

Query: 60  GGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIAD 119
           GGLLYGY+IG+TSCATIS++SP+LSGISWY+L+SV++GL+TSGSLYGAL GSI+AF IAD
Sbjct: 56  GGLLYGYEIGATSCATISLQSPSLSGISWYNLTSVDVGLVTSGSLYGALFGSIVAFTIAD 115

Query: 120 ILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTP 179
           ++GRR+ELILAALLYLVGALVTALAP + ++++GR  +G+ +GLAMHAAPMYIAETAP+P
Sbjct: 116 VIGRRKELILAALLYLVGALVTALAPTYSVLIIGRVTYGVSVGLAMHAAPMYIAETAPSP 175

Query: 180 MRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPR 239
           +RGQL+SLKEFFIVLGMVGGYGIGSL V++ +GWRYMY  S PLAVIMG+GMWWLPASPR
Sbjct: 176 IRGQLVSLKEFFIVLGMVGGYGIGSLTVNIHSGWRYMYATSVPLAVIMGIGMWWLPASPR 235

Query: 240 WLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLRE 299
           WLLL  ++ KG++++ RESAI  LCRLRG +  DSA  +V+EIL EL++VGEDKEV+  E
Sbjct: 236 WLLLRVIQGKGNVENQRESAIKSLCRLRGPAFVDSAAEQVNEILAELTFVGEDKEVTFGE 295

Query: 300 VFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKV 358
           +FHGKCLKALIIG GLVLFQQITGQPSVLYYA SILQ+AGFSAA DATRVSILLGL K+
Sbjct: 296 LFHGKCLKALIIGGGLVLFQQITGQPSVLYYAPSILQTAGFSAAGDATRVSILLGLLKL 354

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454803|ref|XP_002277076.1| PREDICTED: D-xylose-proton symporter-like 2 [Vitis vinifera] gi|297737329|emb|CBI26530.3| unnamed protein product [Vitis vinifera]

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 282/355 (79%), Positives = 314/355 (88%), Gaps = 5/355 (1%)

Query: 4   DPEQARARLSSFGKVGKSSGEIGSADEEPLIANGIRPSPENYSVSAAILPFLFPALGGLL 63
           D EQ    L+S GKVGKSSGEI    +EPLI +G+  S ENYSV+AAILPFLFPALGGLL
Sbjct: 3   DLEQPS--LTSLGKVGKSSGEI-DGMQEPLI-DGVGSS-ENYSVAAAILPFLFPALGGLL 57

Query: 64  YGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGR 123
           YGYDIG+TSCA ISIES +LSGISWYDLSSV+IGL TSGSLYGALIGS+LAFNIAD  GR
Sbjct: 58  YGYDIGATSCALISIESSSLSGISWYDLSSVQIGLTTSGSLYGALIGSVLAFNIADFFGR 117

Query: 124 RRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQ 183
           RRELILAALLYLVGALVTA+AP FI+MV+GRFVFGIGIGL+MHAAPMYIAETAPT +RG+
Sbjct: 118 RRELILAALLYLVGALVTAVAPSFIVMVIGRFVFGIGIGLSMHAAPMYIAETAPTQIRGR 177

Query: 184 LISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLL 243
           LISLKEFFIVLGMV GY +GSLLVD+V+GWRYMYG S+PL+VIMG+GMWWLPASPRWLLL
Sbjct: 178 LISLKEFFIVLGMVVGYTVGSLLVDMVSGWRYMYGVSSPLSVIMGIGMWWLPASPRWLLL 237

Query: 244 CAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHG 303
            A++ KG+MQDL+E+AI CLCRLRG +IGDSAP +VD IL ELS   E KE SL E+FHG
Sbjct: 238 RAIQGKGNMQDLKENAIFCLCRLRGPAIGDSAPAQVDGILDELSSSEETKEASLGEMFHG 297

Query: 304 KCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKV 358
           KCLKAL IG GLVLFQQITGQPSVLYYAASIL+SAGFS ASDATRVSIL+GL K+
Sbjct: 298 KCLKALTIGGGLVLFQQITGQPSVLYYAASILESAGFSGASDATRVSILVGLLKL 352

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	381
TAIR|locus:2148201	503	AT5G17010 [Arabidopsis thalian	0.931	0.705	0.620	4.3e-109
TAIR|locus:2097780	503	VGT1 "vacuolar glucose transpo	0.926	0.701	0.580	4.4e-100
TAIR|locus:2168494	558	AT5G59250 [Arabidopsis thalian	0.921	0.629	0.473	6e-80
UNIPROTKB|F1S3R3	621	SLC2A12 "Uncharacterized prote	0.724	0.444	0.302	9.8e-26
UNIPROTKB|F1PA43	614	SLC2A12 "Uncharacterized prote	0.530	0.328	0.348	6.3e-25
UNIPROTKB|F1MIV2	621	SLC2A12 "Solute carrier family	0.706	0.433	0.309	9.3e-25
UNIPROTKB|F1P4J7	561	SLC2A12 "Uncharacterized prote	0.724	0.491	0.298	1.5e-24
UNIPROTKB|Q8TD20	617	SLC2A12 "Solute carrier family	0.703	0.434	0.311	2.5e-24
UNIPROTKB|Q5J316	621	SLC2A12 "Solute carrier family	0.706	0.433	0.305	2.5e-24
MGI|MGI:3052471	622	Slc2a12 "solute carrier family	0.868	0.532	0.289	1.5e-23

TAIR|locus:2148201 AT5G17010 [Arabidopsis thaliana (taxid:3702)]

 Score = 1078 (384.5 bits), Expect = 4.3e-109, P = 4.3e-109
 Identities = 222/358 (62%), Positives = 261/358 (72%)

Query:     1 MATDPEQARARLSSFGKVGKSSGEIGSADEEPLIANGIRPSPENYSVSAAIXXXXXXXXX 60
             MA DPEQ +   S   + GKSSGEI S + EPLI       PENYSV AAI         
Sbjct:     1 MALDPEQQQPISSVSREFGKSSGEI-SPEREPLIKEN--HVPENYSVVAAILPFLFPALG 57

Query:    61 XXXXXXDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADI 120
                   +IG+TSCATIS++SP+LSGISWY+LSSV++GL+TSGSLYGAL GSI+AF IAD+
Sbjct:    58 GLLYGYEIGATSCATISLQSPSLSGISWYNLSSVDVGLVTSGSLYGALFGSIVAFTIADV 117

Query:   121 LGRRREXXXXXXXXXXXXXXXXXXPDXXXXXXXXXXXXXXXXLAMHAAPMYIAETAPTPM 180
             +GRR+E                  P                 LAMHAAPMYIAETAP+P+
Sbjct:   118 IGRRKELILAALLYLVGALVTALAPTYSVLIIGRVIYGVSVGLAMHAAPMYIAETAPSPI 177

Query:   181 RGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRW 240
             RGQL+SLKEFFIVLGMVGGYGIGSL V++ +GWRYMY  S PLAVIMG+GMWWLPASPRW
Sbjct:   178 RGQLVSLKEFFIVLGMVGGYGIGSLTVNVHSGWRYMYATSVPLAVIMGIGMWWLPASPRW 237

Query:   241 LLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREV 300
             LLL  ++ KG++++ RE+AI  LC LRG +  DSA  +V+EIL EL++VGEDKEV+  E+
Sbjct:   238 LLLRVIQGKGNVENQREAAIKSLCCLRGPAFVDSAAEQVNEILAELTFVGEDKEVTFGEL 297

Query:   301 FHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKV 358
             F GKCLKALIIG GLVLFQQITGQPSVLYYA SILQ+AGFSAA DATRVSILLGL K+
Sbjct:   298 FQGKCLKALIIGGGLVLFQQITGQPSVLYYAPSILQTAGFSAAGDATRVSILLGLLKL 355

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2097780 VGT1 "vacuolar glucose transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 993 (354.6 bits), Expect = 4.4e-100, P = 4.4e-100
 Identities = 209/360 (58%), Positives = 253/360 (70%)

Query:     1 MATDPEQARARLSSFGKV--GKSSGEIGSADEEPLIANGIRPSPENYSVSAAIXXXXXXX 58
             M  DPE     +SS G+V    SSG I +A++EPL+      SPENYSV AAI       
Sbjct:     1 MGFDPENQS--ISSVGQVVGDSSSGGI-TAEKEPLLKEN--HSPENYSVLAAIPPFLFPA 55

Query:    59 XXXXXXXXDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIA 118
                     +IG+TSCA +S++SPTLSGISWYDLSSV++G+ITSGSLYGALIGSI+AF++A
Sbjct:    56 LGALLFGYEIGATSCAIMSLKSPTLSGISWYDLSSVDVGIITSGSLYGALIGSIVAFSVA 115

Query:   119 DILGRRREXXXXXXXXXXXXXXXXXXPDXXXXXXXXXXXXXXXXLAMHAAPMYIAETAPT 178
             DI+GRR+E                  P                 L MHAAPMYIAETAP+
Sbjct:   116 DIIGRRKELILAAFLYLVGAIVTVVAPVFSILIIGRVTYGMGIGLTMHAAPMYIAETAPS 175

Query:   179 PMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASP 238
              +RG++ISLKEF  VLGMVGGYGIGSL + +++GWRYMY    P  VIMG GM WLPASP
Sbjct:   176 QIRGRMISLKEFSTVLGMVGGYGIGSLWITVISGWRYMYATILPFPVIMGTGMCWLPASP 235

Query:   239 RWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLR 298
             RWLLL A++ +G+ ++L+++AI  LCRLRG  I DSA  +V+EIL ELS VGEDKE +  
Sbjct:   236 RWLLLRALQGQGNGENLQQAAIRSLCRLRGSVIADSAAEQVNEILAELSLVGEDKEATFG 295

Query:   299 EVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKV 358
             E+F GKCLKAL I  GLVLFQQITGQPSVLYYA SILQ+AGFSAA+DATR+SILLGL K+
Sbjct:   296 ELFRGKCLKALTIAGGLVLFQQITGQPSVLYYAPSILQTAGFSAAADATRISILLGLLKL 355

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005353 "fructose transmembrane transporter activity" evidence=IDA

GO:0005355 "glucose transmembrane transporter activity" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0009845 "seed germination" evidence=IMP

GO:0009911 "positive regulation of flower development" evidence=IMP

GO:0015755 "fructose transport" evidence=IDA

GO:0015758 "glucose transport" evidence=IDA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

TAIR|locus:2168494 AT5G59250 [Arabidopsis thaliana (taxid:3702)]

 Score = 803 (287.7 bits), Expect = 6.0e-80, P = 6.0e-80
 Identities = 170/359 (47%), Positives = 228/359 (63%)

Query:     5 PEQARARLSSFGKVG-KSSGEIGSADEEPLIANGIRP-SPENYSVSAAIXXXXXXXXXXX 62
             P     R     +VG ++ GE   + E   +A+ +   +PE++S S+ I           
Sbjct:    54 PGLVTTRYRHIFQVGAETGGEFADSGE---VADSLASDAPESFSWSSVILPFIFPALGGL 110

Query:    63 XXXXDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILG 122
                 DIG+TS AT+S++SP LSG +W++ S V++GL+ SGSLYGAL+GSI  + +AD LG
Sbjct:   111 LFGYDIGATSGATLSLQSPALSGTTWFNFSPVQLGLVVSGSLYGALLGSISVYGVADFLG 170

Query:   123 RRREXXXXXXXXXXXXXXXXXXPDXXXXXXXXXXXXXXXXLAMHAAPMYIAETAPTPMRG 182
             RRRE                  PD                LAMH AP+YIAET P+ +RG
Sbjct:   171 RRRELIIAAVLYLLGSLITGCAPDLNILLVGRLLYGFGIGLAMHGAPLYIAETCPSQIRG 230

Query:   183 QLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLL 242
              LISLKE FIVLG++ G+ +GS  +D+V GWRYMYG  TP+A++MG+GMW LPASPRWLL
Sbjct:   231 TLISLKELFIVLGILLGFSVGSFQIDVVGGWRYMYGFGTPVALLMGLGMWSLPASPRWLL 290

Query:   243 LCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTE-VDEILTELSYVGEDKEV--SLRE 299
             L A++ KG +Q+ +E A+  L +LRG+  GD    + VD+    +    ED++   +  E
Sbjct:   291 LRAVQGKGQLQEYKEKAMLALSKLRGRPPGDKISEKLVDDAYLSVKTAYEDEKSGGNFLE 350

Query:   300 VFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKV 358
             VF G  LKAL IG GLVLFQQITGQPSVLYYA SILQ+AGFSAA+DATRVS+++G+FK+
Sbjct:   351 VFQGPNLKALTIGGGLVLFQQITGQPSVLYYAGSILQTAGFSAAADATRVSVIIGVFKL 409

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

UNIPROTKB|F1S3R3 SLC2A12 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 299 (110.3 bits), Expect = 9.8e-26, P = 9.8e-26
 Identities = 90/298 (30%), Positives = 144/298 (48%)

Query:    91 LSSVEIGLITSGSLYGALIGSILAFNIADILGRRREXXXXXXXXXXXXXXXXXXPDXXXX 150
             L+  E  ++ S  L GAL+ S++   + D  GRR                          
Sbjct:    78 LTCHEQEMVVSSLLIGALLASLVGGVVIDRYGRRAAIILSSCLLGVGSLVLIVTLSYAAL 137

Query:   151 XXXXXXXXXXXXLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV 210
                         L+  A  +YIAE AP   RG L+SL E  IV+G++  Y       ++ 
Sbjct:   138 IVGRIAIGVSISLSSIATCVYIAEIAPQHRRGLLVSLNELMIVIGILFAYVSNYTFANIS 197

Query:   211 AGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQS 270
              GW+YM+G   PL V+  + M++LP SPR+L++     KG      E+A   L +LR  +
Sbjct:   198 HGWKYMFGLVIPLGVLQAIAMYFLPPSPRFLVM-----KGQ----EEAASKVLGKLR--A 246

Query:   271 IGDSAPTEVDEILTELSYVGEDKEVSLREVFHGK--CLKALIIGAGLVLFQQITGQPSVL 328
             + D  PTE  E+    S + ++ + S  ++F  K      ++IG  LV F QITGQP++L
Sbjct:   247 VSD--PTE--ELTAIKSSLKDEYQYSFWDLFRSKDNMRTRIMIGLTLVFFVQITGQPNIL 302

Query:   329 YYAASILQSAGFSAASDATRVSILLGLFKV-GS--CTLFF--MSNVYFFCICISYLII 381
             +YA+++L+S GF +   A+  S  +G+ KV G+   TL    + +  F C+  S + +
Sbjct:   303 FYASTVLKSVGFQSNEAASLASTGVGVVKVIGTIPATLLVDHVGSKTFLCVGSSVMAV 360

GO:0016021 "integral to membrane" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

UNIPROTKB|F1PA43 SLC2A12 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 270 (100.1 bits), Expect = 6.3e-25, Sum P(2) = 6.3e-25
 Identities = 78/224 (34%), Positives = 122/224 (54%)

Query:   163 LAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTP 222
             L+  A  +YIAE AP   RG L+SL E  IV+G++  Y       ++  GW+YM+G   P
Sbjct:   146 LSSIATCVYIAEIAPQHRRGLLVSLNELMIVIGILFAYISNYAFANVSHGWKYMFGLVIP 205

Query:   223 LAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEI 282
               V+  + M++LP SPR+L++     KG      E+A   L RLR  +I D+  TE  E+
Sbjct:   206 FGVLQAIAMYFLPPSPRFLVM-----KGH----EEAASKVLRRLR--AISDT--TE--EL 250

Query:   283 LTELSYVGEDKEVSLREVFHGK--CLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGF 340
                 S + ++ + S  ++F  K      ++IG  LV F Q+TGQP++L+YA+++L+S GF
Sbjct:   251 TGIKSSLKDEYQYSFWDLFRSKDNMRTRIMIGLTLVFFVQVTGQPNILFYASTVLKSVGF 310

Query:   341 SAASDATRVSILLGLFKVGS---CTLFF--MSNVYFFCICISYL 379
              +   A+  S  +G+ KV S    TL    + +  F CI  S +
Sbjct:   311 QSNEAASLASTGVGVVKVISTIPATLLVDHVGSKTFLCIGTSVM 354

GO:0016021 "integral to membrane" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

UNIPROTKB|F1MIV2 SLC2A12 "Solute carrier family 2, facilitated glucose transporter member 12" [Bos taurus (taxid:9913)]

 Score = 290 (107.1 bits), Expect = 9.3e-25, P = 9.3e-25
 Identities = 90/291 (30%), Positives = 140/291 (48%)

Query:    91 LSSVEIGLITSGSLYGALIGSILAFNIADILGRRREXXXXXXXXXXXXXXXXXXPDXXXX 150
             L+  E  ++ S  L GAL+ S++   + D  GRR                          
Sbjct:    78 LTCHEQEMVVSSLLIGALLASLIGGVLIDRYGRRAAIILSSCLLGLGSLVLIISLSYTTL 137

Query:   151 XXXXXXXXXXXXLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV 210
                         L+  A  +YIAE AP   RG L+SL E  IV+G++  Y       ++ 
Sbjct:   138 IGGRIAIGVFISLSSTATCVYIAEIAPQHRRGLLVSLNELMIVIGILFAYISNYAFANIS 197

Query:   211 AGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQS 270
              GW+YM+G   PL V+  + M++LP SPR+L++     KG      E+A   L +LR  +
Sbjct:   198 HGWKYMFGLVIPLGVLQAIAMYFLPPSPRFLVM-----KGH----EEAASKVLGKLR--A 246

Query:   271 IGDSAPTEVDEILTELSYVGEDKEVSLREVFHGK--CLKALIIGAGLVLFQQITGQPSVL 328
             I D+  TE  E+    S + ++ + S  ++F  K      ++IG  LV F QITGQP++L
Sbjct:   247 ISDT--TE--ELTVIKSSLKDEYQYSFWDLFRSKDNMRTRIMIGLMLVFFVQITGQPNIL 302

Query:   329 YYAASILQSAGFSAASDATRVSILLGLFKVGS---CTLFF--MSNVYFFCI 374
             +YA+++L+S GF +   A+  S  +G+ KV S    TL    + +  F CI
Sbjct:   303 FYASTVLKSVGFQSNEAASLASTGVGVVKVISTIPATLLVDQVGSKTFLCI 353

GO:0016021 "integral to membrane" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

UNIPROTKB|F1P4J7 SLC2A12 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 287 (106.1 bits), Expect = 1.5e-24, P = 1.5e-24
 Identities = 89/298 (29%), Positives = 140/298 (46%)

Query:    91 LSSVEIGLITSGSLYGALIGSILAFNIADILGRRREXXXXXXXXXXXXXXXXXXPDXXXX 150
             LS  E  ++ S  L+GAL  S+    + D  GRR                          
Sbjct:    44 LSCKEQEIVVSSLLFGALFASLTGGFLIDRFGRRFAIIIASSLLVMGSLILLPHESYGIL 103

Query:   151 XXXXXXXXXXXXLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV 210
                         L+  A  +YIAE AP   RG L+SL E  IV+G++  Y        + 
Sbjct:   104 IVGRIAIGISISLSSIATCVYIAEIAPQHRRGLLVSLNELMIVIGILFAYISNYAFASVS 163

Query:   211 AGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQS 270
              GW+YM+G   PL  +  + M++LP SPR+L++    +  D     E+A   L RLR  S
Sbjct:   164 HGWKYMFGLVIPLGALQAIAMYFLPPSPRFLVM----KNND-----EAARKILERLRETS 214

Query:   271 IGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKC-LKA-LIIGAGLVLFQQITGQPSVL 328
                 A  E+  I + L    ++ + S  ++F  K  ++A +++G  LV F Q TGQP++L
Sbjct:   215 ---DATKELTVIKSSLK---DEHQYSFVDLFRSKNNMRARMLVGLTLVFFVQTTGQPNIL 268

Query:   329 YYAASILQSAGFSAASDATRVSILLGLFKVGS---CTLFF--MSNVYFFCICISYLII 381
             +YA+++L+S GF +   A+  S  +G+ KV S    T+F   + +  F CI  S + +
Sbjct:   269 FYASTVLKSVGFQSNEAASLASTGVGVVKVVSTVPATVFVDKVGSKTFLCIGSSVMAV 326

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q8TD20 SLC2A12 "Solute carrier family 2, facilitated glucose transporter member 12" [Homo sapiens (taxid:9606)]

 Score = 286 (105.7 bits), Expect = 2.5e-24, P = 2.5e-24
 Identities = 91/292 (31%), Positives = 140/292 (47%)

Query:    91 LSSVEIGLITSGSLYGALIGSILAFNIADILGRRREXXXXXXXXXXXXXXXXXXPDXXXX 150
             LS  E  ++ S  + GAL+ S+    + D  GRR                          
Sbjct:    74 LSCHEQEMVVSSLVIGALLASLTGGVLIDRYGRRTAIILSSCLLGLGSLVLILSLSYTVL 133

Query:   151 XXXXXXXXXXXXLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV 210
                         L+  A  +YIAE AP   RG L+SL E  IV+G++  Y       ++ 
Sbjct:   134 IVGRIAIGVSISLSSIATCVYIAEIAPQHRRGLLVSLNELMIVIGILSAYISNYAFANVF 193

Query:   211 AGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAIS-CLCRLRGQ 269
              GW+YM+G   PL V+  + M++LP SPR+L++     KG     +E A S  L RLR  
Sbjct:   194 HGWKYMFGLVIPLGVLQAIAMYFLPPSPRFLVM-----KG-----QEGAASKVLGRLR-- 241

Query:   270 SIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGK--CLKALIIGAGLVLFQQITGQPSV 327
             ++ D+  TE  E+    S + ++ + S  ++F  K      ++IG  LV F QITGQP++
Sbjct:   242 ALSDT--TE--ELTVIKSSLKDEYQYSFWDLFRSKDNMRTRIMIGLTLVFFVQITGQPNI 297

Query:   328 LYYAASILQSAGFSAASDATRVSILLGLFKVGS---CTLFF--MSNVYFFCI 374
             L+YA+++L+S GF +   A+  S  +G+ KV S    TL    + +  F CI
Sbjct:   298 LFYASTVLKSVGFQSNEAASLASTGVGVVKVISTIPATLLVDHVGSKTFLCI 349

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0012505 "endomembrane system" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

UNIPROTKB|Q5J316 SLC2A12 "Solute carrier family 2, facilitated glucose transporter member 12" [Bos taurus (taxid:9913)]

 Score = 286 (105.7 bits), Expect = 2.5e-24, P = 2.5e-24
 Identities = 89/291 (30%), Positives = 140/291 (48%)

Query:    91 LSSVEIGLITSGSLYGALIGSILAFNIADILGRRREXXXXXXXXXXXXXXXXXXPDXXXX 150
             L+  E  ++ S  L GAL+ S++   + D  GRR                          
Sbjct:    78 LTCHEQEMVVSSLLIGALLASLIGGVLIDRYGRRAAIILSSCLLGLGSLVLIISLSYTTL 137

Query:   151 XXXXXXXXXXXXLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV 210
                         L+  A  +YIAE AP   RG L+SL E  IV+G++  Y       ++ 
Sbjct:   138 IGGRIAIGVFISLSSTATCVYIAEIAPQHRRGLLVSLNELMIVIGILFAYISNYAFANIS 197

Query:   211 AGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQS 270
              GW+YM+G   PL V+  + M++LP SPR+L++     KG      E+A   L +LR  +
Sbjct:   198 HGWKYMFGLVIPLGVLQAIAMYFLPPSPRFLVM-----KGH----EEAASKVLGKLR--A 246

Query:   271 IGDSAPTEVDEILTELSYVGEDKEVSLREVFHGK--CLKALIIGAGLVLFQQITGQPSVL 328
             + D+  TE  E+    S + ++ + S  ++F  K      ++IG  LV F QITGQP++L
Sbjct:   247 VLDT--TE--ELTVIKSSLKDEYQYSFWDLFRSKDNMRTRIMIGLTLVFFVQITGQPNIL 302

Query:   329 YYAASILQSAGFSAASDATRVSILLGLFKVGS---CTLFF--MSNVYFFCI 374
             +YA+++L+S GF +   A+  S  +G+ KV S    TL    + +  F CI
Sbjct:   303 FYASTVLKSVGFQSNEAASLASTGVGVVKVISTIPATLLVDQVGSKTFLCI 353

GO:0012505 "endomembrane system" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

MGI|MGI:3052471 Slc2a12 "solute carrier family 2 (facilitated glucose transporter), member 12" [Mus musculus (taxid:10090)]

 Score = 279 (103.3 bits), Expect = 1.5e-23, P = 1.5e-23
 Identities = 108/373 (28%), Positives = 166/373 (44%)

Query:    12 LSSFGKVGKSSGEIG-SADEEPLIANGIRPSPENY--SVSAAIXXXXXXXXXXXXXXXDI 68
             L+  G+  ++ G  G S    P  A G  PS   +  SV+AAI               ++
Sbjct:    13 LNQKGREAETEGSCGASGGGHPACAGG--PSMFTFLTSVTAAISGLLVGY--------EL 62

Query:    69 GSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRREXX 128
             G  S A + I   TL  ++ ++       ++ S  L GA + S+    + D  GRR    
Sbjct:    63 GLISGALLQIR--TLLALTCHEQE-----MVVSSLLIGAFLASLTGGVLIDRYGRRLAII 115

Query:   129 XXXXXXXXXXXXXXXXPDXXXXXXXXXXXXXXXXLAMHAAPMYIAETAPTPMRGQLISLK 188
                                               L+  A  +YIAE AP   RG L+SL 
Sbjct:   116 LSSCLLGLGSLVLIMSLSYTLLIMGRVAIGVSISLSSIATCVYIAEIAPQHRRGLLVSLN 175

Query:   189 EFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKR 248
             E  IV G++  Y       ++  GW+YM+G   PL V+  + M++LP SPR+L++     
Sbjct:   176 ELMIVTGILFAYISNYAFANISNGWKYMFGLVIPLGVLQAIAMYFLPPSPRFLVM----- 230

Query:   249 KGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGK--CL 306
             KG      ESA   L +LR   I D+  TE  E+    S + ++ + S  ++F  K    
Sbjct:   231 KGQ----EESAGKVLRKLR--VISDT--TE--ELTLIKSSLKDEYQYSFWDLFRSKDNMR 280

Query:   307 KALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKVGS---CTL 363
               ++IG  LV F Q TGQP++L+YA+++L+S GF +   A+  S  +G+ KV S    TL
Sbjct:   281 TRILIGLTLVFFVQTTGQPNILFYASTVLKSVGFQSNEAASLASTGVGVVKVVSTIPATL 340

Query:   364 FF--MSNVYFFCI 374
                 + +  F CI
Sbjct:   341 LVDHIGSKTFLCI 353

GO:0003674 "molecular_function" evidence=ND

GO:0005215 "transporter activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0015758 "glucose transport" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	381
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	1e-43
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	1e-41
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	7e-36
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	1e-18
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	3e-17
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	4e-15
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	3e-13
PRK11551	406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	1e-11
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	4e-11
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	3e-10
TIGR00891	405	TIGR00891, 2A0112, putative sialic acid transporte	5e-09
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-07
COG0738	422	COG0738, FucP, Fucose permease [Carbohydrate trans	2e-06
PRK03893	496	PRK03893, PRK03893, putative sialic acid transport	3e-06
TIGR00711	485	TIGR00711, efflux_EmrB, drug resistance transporte	2e-04
TIGR00900	365	TIGR00900, 2A0121, H+ Antiporter protein	3e-04
TIGR00894	465	TIGR00894, 2A0114euk, Na(+)-dependent inorganic ph	3e-04
PRK12307	426	PRK12307, PRK12307, putative sialic acid transport	3e-04
TIGR00883	394	TIGR00883, 2A0106, metabolite-proton symporter	4e-04
pfam05631	354	pfam05631, DUF791, Protein of unknown function (DU	7e-04
PRK03545	390	PRK03545, PRK03545, putative arabinose transporter	0.001
TIGR01299	742	TIGR01299, synapt_SV2, synaptic vesicle protein SV	0.003

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score =  156 bits (397), Expect = 1e-43
 Identities = 107/315 (33%), Positives = 165/315 (52%), Gaps = 24/315 (7%)

Query: 55  LFPALGGLLYGYDIGSTSCATISIES----PTLSGISWYDLSSVEIGLITSGSLYGALIG 110
           L  ALGG L+GYD G        I+       L+ I     S+V  GLI S    G LIG
Sbjct: 3   LVAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCLIG 62

Query: 111 SILAFNIADILGRRRELILAALLYLVGALVTALAPD--FIIMVVGRFVFGIGIGLAMHAA 168
           S+ A  + D  GR++ L++  +L+++GAL+   A    F +++VGR + G+G+G      
Sbjct: 63  SLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVLV 122

Query: 169 PMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVA--GWRYMYGASTPLAVI 226
           PMYI+E AP  +RG L SL +  I  G++    IG  L       GWR   G     A++
Sbjct: 123 PMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAIL 182

Query: 227 MGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTEL 286
           + +G+ +LP SPRWL+L     KG +++ R      L +LRG S  D    E+ E    L
Sbjct: 183 LLIGLLFLPESPRWLVL-----KGKLEEARAV----LAKLRGVSDVDQ---EIQEEKDSL 230

Query: 287 SYVGEDKEVSLREVFHGKCLK-ALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASD 345
               E ++ S  E+F GK ++  L++G  L +FQQ+TG  ++ YY+ +I ++ G    SD
Sbjct: 231 ERSVEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGL---SD 287

Query: 346 ATRVSILLGLFKVGS 360
           +  V+I++G+     
Sbjct: 288 SLLVTIIVGVVNFVF 302

Length = 449

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score =  152 bits (385), Expect = 1e-41
 Identities = 108/356 (30%), Positives = 170/356 (47%), Gaps = 21/356 (5%)

Query: 25  IGSADEEPLIANGIRPSPENYSVSAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLS 84
           +  A+        + P+    +     L  L  A+GGL++GYD G    A          
Sbjct: 1   MSDANLADASELLVTPAGLGSTYWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKF 60

Query: 85  GIS-WYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTAL 143
             +     SS   GL+ S  L G  IG++ A  ++D  GR++ L++ ALL+++GA++  L
Sbjct: 61  TSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGL 120

Query: 144 AP---DFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGY 200
           A       +++VGR + GIG+G+A    PMY++E AP  +RG L SL +  I  G++  Y
Sbjct: 121 AAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAY 180

Query: 201 GIGSLLVDLVA--GWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRES 258
           G GS  V L    GWR   G     A ++ +G+++LP SPRWL+          +   E 
Sbjct: 181 GFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLV---------GKGRVEE 231

Query: 259 AISCLCRLRGQSIGDSA-PTEVDEILTELSYVGEDKEVSLREVF--HGKCLKALIIGAGL 315
           A   L RLRG S  D     E++ I  + S      + S   +F    +  + L +G  L
Sbjct: 232 ARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVL 291

Query: 316 VLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKVGS--CTLFFMSNV 369
             FQQ TG  +++YY+ +I ++AG S    A  VSI++G          +F +   
Sbjct: 292 QWFQQFTGINAIMYYSPTIFENAGVS-TDHAFLVSIIVGAVNFAFTFVAIFLVDRF 346

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score =  135 bits (343), Expect = 7e-36
 Identities = 95/331 (28%), Positives = 161/331 (48%), Gaps = 43/331 (12%)

Query: 55  LFPALGGLLYGYDIGSTSCATISIESPTLSGISW-YDLSSVEIGLITSGSLYGALIGSIL 113
           L   LGGLL+GYD    S    S+ +  ++  +     ++  +G   + +L G +IG  L
Sbjct: 15  LVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGAL 74

Query: 114 AFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGR--------FVF-----GIG 160
               ++  GRR  L +AA+L+ + AL +A  P+F    +G         FV      GIG
Sbjct: 75  GGYCSNRFGRRDSLKIAAVLFFISALGSA-WPEFGFTSIGPDNTGYVPEFVIYRIIGGIG 133

Query: 161 IGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMV----GGYGI---GSLLVDLVAGW 213
           +GLA   +PMYIAE AP  +RG+L+S  +F I+ G +      Y I   G        GW
Sbjct: 134 VGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGW 193

Query: 214 RYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGD 273
           RYM+ +    A++  M ++++P +PR+L+          +  +E A   L ++ G +   
Sbjct: 194 RYMFASEAIPALLFLMLLYFVPETPRYLM---------SRGKQEQAEGILRKIMGNT--- 241

Query: 274 SAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAAS 333
            A   + EI   L +  +      + +  G  +  ++IG  L +FQQ  G   VLYYA  
Sbjct: 242 LATQALQEIKHSLDHGRKTGG---KLLMFGVGV--IVIGVMLSVFQQFVGINVVLYYAPE 296

Query: 334 ILQSAGFSAASDATRV-SILLGLFKVGSCTL 363
           I ++ G  A++D   + +I++G+  + + T+
Sbjct: 297 IFKTLG--ASTDIALLQTIIVGVINL-TFTV 324

Length = 479

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 86.6 bits (215), Expect = 1e-18
 Identities = 73/327 (22%), Positives = 127/327 (38%), Gaps = 32/327 (9%)

Query: 34  IANGIRPSPENYSVSAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSS 93
           + N IR  P +          +   L  L+ GYD+     A +   +P +S   W  L  
Sbjct: 2   VQNNIRKQPLS---RYQWRAIILSFLIMLMDGYDL-----AAMGFAAPAISA-EW-GLDP 51

Query: 94  VEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVG 153
           V++G + S  L G   G++    +AD +GRRR L+ + LL+ V  L+ ALA +   +++ 
Sbjct: 52  VQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLIL 111

Query: 154 RFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGW 213
           RF+ G+G+G  M      ++E AP   RG  + L      +G   G  +   L+  V GW
Sbjct: 112 RFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIP-VFGW 170

Query: 214 RYMYGASTPLAVIMGMGMW-WLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIG 272
           R ++       +++ + +  +LP S  +L+      K      R             +I 
Sbjct: 171 RSLFYVGGIAPLLLLLLLMRFLPESIDFLV-----SKRPETVRR----------IVNAIA 215

Query: 273 DSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAA 332
                E    L E       K    + +F GK  +  ++   L     +      +Y+  
Sbjct: 216 PQMQAEAQSALPEQKATQGTKRSVFKALFQGKTARITVLLWLLYFMLLVG-----VYFLT 270

Query: 333 SILQSAGFSAASDATRVSILLGLFKVG 359
           + L           +  +    LF  G
Sbjct: 271 NWLPKLMVELGFSLSLAATGGALFNFG 297

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 81.6 bits (202), Expect = 3e-17
 Identities = 62/193 (32%), Positives = 93/193 (48%), Gaps = 8/193 (4%)

Query: 54  FLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSIL 113
            L   LG  L G D G  S A   +            LS+ + GLI S    G  +GS+L
Sbjct: 1   LLLLFLGFFLSGLDRGLLSPALPLL-------AEDLGLSASQAGLIVSAFSLGYALGSLL 53

Query: 114 AFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIA 173
           A  ++D  GRRR L+L  LL+ +G+L+ A A    +++VGRF+ G+G G    AA   IA
Sbjct: 54  AGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIA 113

Query: 174 ETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW 233
           E  P   RG+ + L      LG + G  +G LL +   GWR+++     L +++ + + +
Sbjct: 114 EWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAES-LGWRWLFLILAILGLLLALLLLF 172

Query: 234 LPASPRWLLLCAM 246
           L      L L   
Sbjct: 173 LLRLLLLLALAFF 185

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score = 76.2 bits (188), Expect = 4e-15
 Identities = 42/152 (27%), Positives = 79/152 (51%), Gaps = 4/152 (2%)

Query: 92  SSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMV 151
            + ++ L  S    G L+GS +   ++D  GR++ L+L+ L+  V  ++TA +P++ + +
Sbjct: 125 DAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFL 184

Query: 152 VGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVA 211
           V R + G+GIG     A +   E  P   R  + +L + F  LG+V    +  L+   + 
Sbjct: 185 VFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLV----LLPLVAYFIP 240

Query: 212 GWRYMYGASTPLAVIMGMGMWWLPASPRWLLL 243
            WR++  A +    +  +  W++P SPRWL+ 
Sbjct: 241 DWRWLQLAVSLPTFLFFLLSWFVPESPRWLIS 272

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 69.8 bits (171), Expect = 3e-13
 Identities = 47/152 (30%), Positives = 71/152 (46%), Gaps = 2/152 (1%)

Query: 89  YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFI 148
             +S  EIGL+ +    G  +   LA  ++D  GRRR L++  LL+ +G L+   A    
Sbjct: 27  LGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLW 86

Query: 149 IMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVD 208
           +++V R + G+G G    AA   IA+  P   RG+ + L      LG   G  +G LL  
Sbjct: 87  LLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLAS 146

Query: 209 LVAGWRYMYGASTPLAVIMG-MGMWWLPASPR 239
           L  GWR  +     LA++   +    LP  P 
Sbjct: 147 LF-GWRAAFLILAILALLAAVLAALLLPRPPP 177

Length = 346

>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

 Score = 65.0 bits (159), Expect = 1e-11
 Identities = 49/163 (30%), Positives = 79/163 (48%), Gaps = 24/163 (14%)

Query: 91  LSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIM 150
           L   ++G   S  + G L G++L   +AD +GR+R LI++  L+ + +L TA A DF  +
Sbjct: 47  LDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSL 106

Query: 151 VVGRFVFGIGIGLAMHAAPMYIA---ETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLV 207
           +V R + G+G+G A+   P  IA   E     +RG  +SL        M  G   G  L 
Sbjct: 107 LVARLLTGVGLGGAL---PNLIALTSEAVGPRLRGTAVSL--------MYCGVPFGGALA 155

Query: 208 DLVA-------GWRYMY--GASTPLAVIMGMGMWWLPASPRWL 241
            ++         WR+++  G   PL ++  + M WLP S  + 
Sbjct: 156 SVIGVLAAGDAAWRHIFYVGGVGPLLLVPLL-MRWLPESRAFA 197

Length = 406

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 63.4 bits (155), Expect = 4e-11
 Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 1/139 (0%)

Query: 96  IGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRF 155
            G + +    G  +G+ L   +   L RRR L+    L++V  L++ALAP F ++++ R 
Sbjct: 50  AGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARA 109

Query: 156 VFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRY 215
           + G+  G+    A    A   P   RG+ ++L    + L  V G  +G+ L  L  GWR 
Sbjct: 110 LAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLF-GWRA 168

Query: 216 MYGASTPLAVIMGMGMWWL 234
            + A   LA++  + +W L
Sbjct: 169 TFLAIAVLALLALLLLWKL 187

Length = 394

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 57.3 bits (139), Expect = 3e-10
 Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 1/121 (0%)

Query: 97  GLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFV 156
           GL+ +G   G LI S L+  + D  GR+  L++   ++++   + AL+ +  ++++ RF+
Sbjct: 1   GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFL 60

Query: 157 FGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYM 216
            G G   A+ A    IA+  P   RG  + L    I LG + G  +G +L   + GWR  
Sbjct: 61  QGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFL-GWRAP 119

Query: 217 Y 217
           +
Sbjct: 120 F 120

Length = 141

>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter

 Score = 57.2 bits (138), Expect = 5e-09
 Identities = 36/154 (23%), Positives = 69/154 (44%), Gaps = 20/154 (12%)

Query: 89  YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFI 148
           + L++V+   + S +L     G+++     D  GRR  ++ + +L+  G L    AP +I
Sbjct: 42  FGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYI 101

Query: 149 IMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVD 208
            M + R V GIG+G    ++  Y+ E+ P  +R +   L        ++ GY +G+++  
Sbjct: 102 TMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGL--------LISGYAVGAVVAA 153

Query: 209 LVA---------GWRYMYGASTPLAVIMGMGMWW 233
            V          GWR ++  S    +     +W 
Sbjct: 154 QVYSLVVPVWGDGWRALFFISILPIIFA---LWL 184

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 56/190 (29%), Positives = 88/190 (46%), Gaps = 3/190 (1%)

Query: 47  VSAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYG 106
           + A +L FL   L  L   + + S     +    P         LS+ E GL+ S    G
Sbjct: 165 LLALLLLFLLRLLLLLALAFFLLSFGYYGLLTYLPLY-LQEVLGLSAAEAGLLLSLFGLG 223

Query: 107 ALIGSILAFNIADILGRRRE-LILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAM 165
            ++G++L   ++D LGRRR  L++  LL  +G L+ ALAP   +++V   + G G+G A 
Sbjct: 224 GILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAF 283

Query: 166 HAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAV 225
            A     +E AP   RG    L   F  LG   G  +  LL+D   G+  ++     LA+
Sbjct: 284 PALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTG-GYGGVFLILAALAL 342

Query: 226 IMGMGMWWLP 235
           +  + +  LP
Sbjct: 343 LAALLLLLLP 352

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|223809 COG0738, FucP, Fucose permease [Carbohydrate transport and metabolism]

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 37/139 (26%), Positives = 56/139 (40%), Gaps = 3/139 (2%)

Query: 73  CATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAAL 132
             T   +         +DL+  E  LI      G  I S+ A  +   LG +  ++L  L
Sbjct: 27  FITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLL 86

Query: 133 LYLVGALVTALAP---DFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKE 189
           LY VGA +   A     +   +V  F+   GIGL   AA  Y+            ++L +
Sbjct: 87  LYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQ 146

Query: 190 FFIVLGMVGGYGIGSLLVD 208
            F  LG + G  +GS L+ 
Sbjct: 147 AFNGLGAILGPLLGSSLIL 165

Length = 422

>gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 34/140 (24%), Positives = 64/140 (45%), Gaps = 23/140 (16%)

Query: 89  YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFI 148
           + L++V+   + S +      G +L   + D  GRR  ++++ +L+ VG L    AP + 
Sbjct: 50  FGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYW 109

Query: 149 IMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMR----GQLISLKEFFIVLGMVGGYGIGS 204
            + + R V G+G+     ++  Y+ E+ P  +R    G LIS            G+ IG+
Sbjct: 110 TLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLIS------------GFSIGA 157

Query: 205 LLVDLVA-------GWRYMY 217
           ++   V        GWR ++
Sbjct: 158 VVAAQVYSLVVPVWGWRALF 177

Length = 496

>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA subfamily

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 30/145 (20%), Positives = 70/145 (48%), Gaps = 11/145 (7%)

Query: 82  TLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVT 141
           +LS + W         +ITS  L  A+   +  + +A   G RR  +++   + +G+L+ 
Sbjct: 35  SLSQVQW---------VITSYMLANAISIPLTGW-LAKRFGTRRLFLISTFAFTLGSLLC 84

Query: 142 ALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYG 201
            +AP+  +M++ R + G G G  +  +   +    P   RG+ +++    +++    G  
Sbjct: 85  GVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPT 144

Query: 202 IGSLLVDLVAGWRYMYGASTPLAVI 226
           +G  +++    WR+++  + P+ +I
Sbjct: 145 LGGWIIENY-HWRWIFLINVPIGII 168

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other]. Length = 485

>gnl|CDD|162098 TIGR00900, 2A0121, H+ Antiporter protein

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 24/120 (20%), Positives = 42/120 (35%), Gaps = 1/120 (0%)

Query: 90  DLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPD-FI 148
              S   G + +    GAL+G++L   +     R   +  A  +  +  LV  L P  F 
Sbjct: 243 GRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFP 302

Query: 149 IMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVD 208
           + +V  F  G+G G         +    P  + G++   +          G  +   L D
Sbjct: 303 LFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD 362

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 365

>gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate cotransporter

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 39/204 (19%), Positives = 67/204 (32%), Gaps = 13/204 (6%)

Query: 89  YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVT--ALAPD 146
           +  S    GLI S   YG +I  I    +A     +  + +   L  V ++V   A    
Sbjct: 71  FKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGG 130

Query: 147 FIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLL 206
             ++V  R + G+  G    A    I + AP   R +L+ +           G+ +G+ +
Sbjct: 131 IALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGM--------STSGFQLGTFI 182

Query: 207 VDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMK-RKGDMQDLRESAISCLCR 265
              ++GW        P+   +  G+     S  W +  A            E        
Sbjct: 183 FLPISGWLCESWGGWPMIFYVF-GIVGCAWSLLWFVFPADDPSIHPCISKFEKK-YINSS 240

Query: 266 LRGQSIGDSAPTEVDEILTELSYV 289
           L+GQ         +  I   L   
Sbjct: 241 LQGQKGSTRQSLPIKAIPKSLPVW 264

[Transport and binding proteins, Anions]. Length = 465

>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 31/131 (23%), Positives = 60/131 (45%), Gaps = 15/131 (11%)

Query: 91  LSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIM 150
           L+ +E   + + +  G   G  L   +AD  GR+  ++ + + Y VG  ++ LA   I++
Sbjct: 50  LTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIML 109

Query: 151 VVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDL- 209
            + RF+ G+G+      A  Y  E+ P  ++ +  +         +V G+GIG+++    
Sbjct: 110 TLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAF--------LVSGFGIGNIIAAYF 161

Query: 210 ------VAGWR 214
                   GWR
Sbjct: 162 MPSFAEAYGWR 172

Length = 426

>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 36/137 (26%), Positives = 64/137 (46%), Gaps = 23/137 (16%)

Query: 109 IGSILAFNIADILGRRRELILAALLYLVGALVTALAPDF--------IIMVVGRFVFGIG 160
           +G+I+  +  D +GR++ L++  L+  +G L+  L P +        I++++ R + G  
Sbjct: 50  LGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFS 109

Query: 161 IGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVA--------- 211
           +G     A +Y+AE AP   RG   S    F  +G   G  + +L V L++         
Sbjct: 110 LGGEWGGAALYLAEYAPPGKRGFYGS----FQQVGAPVGLLLAALTVLLLSYLLGDDALL 165

Query: 212 --GWRYMYGASTPLAVI 226
             GWR  +  S  L +I
Sbjct: 166 EWGWRIPFLVSAVLVLI 182

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394

>gnl|CDD|114359 pfam05631, DUF791, Protein of unknown function (DUF791)

 Score = 41.0 bits (96), Expect = 7e-04
 Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 6/83 (7%)

Query: 85  GISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALA 144
           G S  D+  + I    S  L+G ++GS+     AD  GR+R  +   +LY + + +T  +
Sbjct: 65  GFSKGDIGILFIAGFGSSMLFGTIVGSL-----ADKQGRKRACLTYCILY-ILSCITKHS 118

Query: 145 PDFIIMVVGRFVFGIGIGLAMHA 167
           P++ ++++GRF+ GI   L   A
Sbjct: 119 PNYKVLMIGRFLGGIATSLLFSA 141

This family consists of several eukaryotic proteins of unknown function. Length = 354

>gnl|CDD|179591 PRK03545, PRK03545, putative arabinose transporter; Provisional

 Score = 40.6 bits (96), Expect = 0.001
 Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 13/118 (11%)

Query: 123 RRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHA------APMYIAETA 176
           RR+ LI   +L++   +++ALA +F ++++ R    IGI  A HA      A + I   A
Sbjct: 73  RRKLLIGLFVLFIASHVLSALAWNFTVLLISR----IGIAFA-HAIFWSITASLAI-RVA 126

Query: 177 PTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWL 234
           P   + Q +SL      L MV G  +G ++   + GWR  + A    A+I  + +  L
Sbjct: 127 PAGKKAQALSLLATGTALAMVLGLPLGRVIGQYL-GWRTTFLAIGGGALITLLLLIKL 183

Length = 390

>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2

 Score = 39.6 bits (92), Expect = 0.003
 Identities = 34/167 (20%), Positives = 68/167 (40%), Gaps = 18/167 (10%)

Query: 91  LSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIM 150
           +     G++      G ++G+     +AD LGR++ L++   +    A  ++    +   
Sbjct: 199 IPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFF 258

Query: 151 VVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV 210
           +  R + G GIG A+     Y AE      RG+ +S   +  +  M+GG    ++   ++
Sbjct: 259 LFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLS---WLCMFWMIGGIYAAAMAWAII 315

Query: 211 A--GWRYMYGASTPL-------------AVIMGMGMWWLPASPRWLL 242
              GW +  G++                 V     + ++P SPR+ L
Sbjct: 316 PHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFL 362

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	381
KOG0569	485	consensus Permease of the major facilitator superf	100.0
KOG0254	513	consensus Predicted transporter (major facilitator	99.97
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.97
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.96
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.96
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.96
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.96
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.96
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.95
PRK11663	434	regulatory protein UhpC; Provisional	99.94
PRK10642	490	proline/glycine betaine transporter; Provisional	99.94
TIGR00898	505	2A0119 cation transport protein.	99.93
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.93
TIGR00891	405	2A0112 putative sialic acid transporter.	99.93
PRK12307	426	putative sialic acid transporter; Provisional	99.93
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.93
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.93
PRK03545	390	putative arabinose transporter; Provisional	99.93
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.93
KOG2533	495	consensus Permease of the major facilitator superf	99.93
TIGR00895	398	2A0115 benzoate transport.	99.93
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.93
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.93
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.92
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.92
KOG2532	466	consensus Permease of the major facilitator superf	99.92
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.92
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.92
PRK09705	393	cynX putative cyanate transporter; Provisional	99.92
PLN00028	476	nitrate transmembrane transporter; Provisional	99.92
PRK15075	434	citrate-proton symporter; Provisional	99.91
TIGR00893	399	2A0114 d-galactonate transporter.	99.91
PRK09952	438	shikimate transporter; Provisional	99.91
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.91
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.91
PRK10091	382	MFS transport protein AraJ; Provisional	99.9
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.9
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.9
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.9
PRK03699	394	putative transporter; Provisional	99.9
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.9
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.9
PRK03893	496	putative sialic acid transporter; Provisional	99.89
TIGR00900	365	2A0121 H+ Antiporter protein.	99.89
PRK11043	401	putative transporter; Provisional	99.89
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.89
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.89
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.89
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.89
PRK10133	438	L-fucose transporter; Provisional	99.88
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.88
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.88
TIGR00805	633	oat sodium-independent organic anion transporter.	99.88
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.87
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.87
PRK10504	471	putative transporter; Provisional	99.87
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.87
PRK03633	381	putative MFS family transporter protein; Provision	99.87
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.86
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.86
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.86
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.86
PRK05122	399	major facilitator superfamily transporter; Provisi	99.86
PRK12382	392	putative transporter; Provisional	99.85
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.85
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.84
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.84
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.84
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.83
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.83
PRK10489	417	enterobactin exporter EntS; Provisional	99.83
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.83
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.83
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.82
PRK09874	408	drug efflux system protein MdtG; Provisional	99.82
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.81
PTZ00207	591	hypothetical protein; Provisional	99.81
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.81
PRK11010	491	ampG muropeptide transporter; Validated	99.81
PRK10054	395	putative transporter; Provisional	99.8
TIGR00901	356	2A0125 AmpG-related permease.	99.79
PRK11902	402	ampG muropeptide transporter; Reviewed	99.79
KOG2615	451	consensus Permease of the major facilitator superf	99.79
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.79
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.78
PRK10642	490	proline/glycine betaine transporter; Provisional	99.77
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.76
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.76
PRK15011	393	sugar efflux transporter B; Provisional	99.75
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.72
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.71
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.71
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.71
PRK09528	420	lacY galactoside permease; Reviewed	99.68
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.65
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.63
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.63
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.62
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.61
PRK15011	393	sugar efflux transporter B; Provisional	99.6
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.59
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.59
PRK09528	420	lacY galactoside permease; Reviewed	99.59
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.58
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.58
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.56
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.55
PRK05122	399	major facilitator superfamily transporter; Provisi	99.54
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.54
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.53
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.53
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.53
KOG3626	735	consensus Organic anion transporter [Secondary met	99.53
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.52
KOG2563	480	consensus Permease of the major facilitator superf	99.51
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.5
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.5
PRK12382	392	putative transporter; Provisional	99.49
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.48
PRK09952	438	shikimate transporter; Provisional	99.46
TIGR00893	399	2A0114 d-galactonate transporter.	99.45
PRK09874	408	drug efflux system protein MdtG; Provisional	99.45
PRK03699	394	putative transporter; Provisional	99.44
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.43
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.43
PRK03633	381	putative MFS family transporter protein; Provision	99.43
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.42
TIGR00891	405	2A0112 putative sialic acid transporter.	99.42
PRK09705	393	cynX putative cyanate transporter; Provisional	99.4
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.4
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.4
PRK03893	496	putative sialic acid transporter; Provisional	99.39
PRK03545	390	putative arabinose transporter; Provisional	99.39
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.38
PRK10489	417	enterobactin exporter EntS; Provisional	99.38
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.37
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.37
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.36
PRK09669	444	putative symporter YagG; Provisional	99.35
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.35
PRK11010	491	ampG muropeptide transporter; Validated	99.35
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.34
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.33
PRK10429	473	melibiose:sodium symporter; Provisional	99.32
TIGR00895	398	2A0115 benzoate transport.	99.32
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.31
PRK11462	460	putative transporter; Provisional	99.31
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.3
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.3
PRK11663	434	regulatory protein UhpC; Provisional	99.29
TIGR00898	505	2A0119 cation transport protein.	99.28
TIGR00900	365	2A0121 H+ Antiporter protein.	99.28
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.28
PLN00028	476	nitrate transmembrane transporter; Provisional	99.27
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.27
PRK10504	471	putative transporter; Provisional	99.26
PF13347	428	MFS_2: MFS/sugar transport protein	99.26
PRK15075	434	citrate-proton symporter; Provisional	99.26
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.26
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.26
PRK12307	426	putative sialic acid transporter; Provisional	99.25
PRK10054	395	putative transporter; Provisional	99.25
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.24
KOG0569	485	consensus Permease of the major facilitator superf	99.24
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.22
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.21
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.2
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	99.19
PRK09848	448	glucuronide transporter; Provisional	99.19
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.18
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.18
PRK10429	473	melibiose:sodium symporter; Provisional	99.17
PRK10091	382	MFS transport protein AraJ; Provisional	99.16
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.15
PRK11902	402	ampG muropeptide transporter; Reviewed	99.15
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.14
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.14
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.14
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.14
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.13
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	99.13
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.11
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.11
COG2211	467	MelB Na+/melibiose symporter and related transport	99.1
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.1
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.1
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.09
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.09
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.09
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.07
PRK09848	448	glucuronide transporter; Provisional	99.07
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.04
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.03
PRK09669	444	putative symporter YagG; Provisional	99.03
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.03
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.02
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.01
TIGR00901	356	2A0125 AmpG-related permease.	98.98
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.98
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.97
PRK10133	438	L-fucose transporter; Provisional	98.97
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.96
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.96
PF13347	428	MFS_2: MFS/sugar transport protein	98.94
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.93
COG2211	467	MelB Na+/melibiose symporter and related transport	98.92
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.88
COG0477	338	ProP Permeases of the major facilitator superfamil	98.86
PRK11043	401	putative transporter; Provisional	98.85
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.85
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.84
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.84
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.83
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.83
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.81
PRK11462	460	putative transporter; Provisional	98.78
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.77
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.76
KOG3762	618	consensus Predicted transporter [General function	98.76
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.73
KOG2532	466	consensus Permease of the major facilitator superf	98.72
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.66
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.64
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.61
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.6
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.59
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.54
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.53
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.5
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.49
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	98.48
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.48
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.47
KOG0254	513	consensus Predicted transporter (major facilitator	98.44
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.43
PTZ00207	591	hypothetical protein; Provisional	98.41
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.29
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.22
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.14
KOG2615	451	consensus Permease of the major facilitator superf	98.06
KOG2533	495	consensus Permease of the major facilitator superf	98.04
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.03
PF12832	77	MFS_1_like: MFS_1 like family	98.01
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.99
KOG3098	461	consensus Uncharacterized conserved protein [Funct	97.96
COG3202	509	ATP/ADP translocase [Energy production and convers	97.94
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.92
KOG0637	498	consensus Sucrose transporter and related proteins	97.84
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.78
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	97.76
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	97.68
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.66
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.62
PRK03612	521	spermidine synthase; Provisional	97.57
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	97.53
KOG3810	433	consensus Micronutrient transporters (folate trans	97.52
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	97.48
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	97.41
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	97.15
KOG3098	461	consensus Uncharacterized conserved protein [Funct	97.03
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.02
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	96.85
KOG2563	480	consensus Permease of the major facilitator superf	96.56
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	96.41
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	96.41
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	95.91
KOG1330	493	consensus Sugar transporter/spinster transmembrane	95.77
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	95.72
KOG3762	618	consensus Predicted transporter [General function	95.68
TIGR00805	633	oat sodium-independent organic anion transporter.	95.29
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	95.0
KOG2325	488	consensus Predicted transporter/transmembrane prot	94.87
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	94.13
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	94.02
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	93.91
KOG0637	498	consensus Sucrose transporter and related proteins	92.51
KOG3097	390	consensus Predicted membrane protein [Function unk	90.33
COG4262	508	Predicted spermidine synthase with an N-terminal m	90.28
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	90.1
KOG3880	409	consensus Predicted small molecule transporter inv	88.93
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	88.06
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	87.79
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	82.82
PF12832	77	MFS_1_like: MFS_1 like family	82.71
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	81.79
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	81.28
PF06912	209	DUF1275: Protein of unknown function (DUF1275); In	80.78
KOG3880	409	consensus Predicted small molecule transporter inv	80.59

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=4.5e-31  Score=246.15  Aligned_cols=309  Identities=28%  Similarity=0.467  Sum_probs=255.1

Q ss_pred             HHHHHHHHHHHHHHhhhcccccccccccccccCCCCCCC-cccc--CCh----hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016882           48 SAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGI-SWYD--LSS----VEIGLITSGSLYGALIGSILAFNIADI  120 (381)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~g~l~d~  120 (381)
                      +++....+..+++.+.+||....+++....+.+-.+..- +.+|  .+.    ...+.+.+++.+|.++|+++.++++||
T Consensus         7 ~~L~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~   86 (485)
T KOG0569|consen    7 RRLLLAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADR   86 (485)
T ss_pred             HHHHHHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344555577777779999999999887665543211000 0023  333    345667888999999999999999999


Q ss_pred             hchHHHHHHHHHHHHHHHHHHHH---hchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHH
Q 016882          121 LGRRRELILAALLYLVGALVTAL---APDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMV  197 (381)
Q Consensus       121 ~Grk~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~  197 (381)
                      +|||..+++..++..++.++..+   .+++.+++++|++.|+..|......+.|+.|..|.+.||....+.+.+..+|.+
T Consensus        87 ~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~l  166 (485)
T KOG0569|consen   87 FGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGIL  166 (485)
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHH
Confidence            99999999998888887777666   467899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH-hhcccchhHHHHHhhHHHHHHHHHHHhhcccchhHHHH-hhccccCcchhhHHHHHHHHHHHhCCCCCCCC
Q 016882          198 GGYGIGSL-LVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLL-CAMKRKGDMQDLRESAISCLCRLRGQSIGDSA  275 (381)
Q Consensus       198 ~~~~~~~~-l~~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (381)
                      ++..++.. +..+...|++.+.+..+++++.++...++||||+|+.. ++         +++||++.++++++.+.++++
T Consensus       167 l~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~---------~~~~A~~sl~~y~G~~~~~~~  237 (485)
T KOG0569|consen  167 LGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKG---------DEEEARKALKFYRGKEDVEAE  237 (485)
T ss_pred             HHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcC---------CHHHHHHHHHHHhCCCcchhH
Confidence            99777655 33444479999999999999999999999999999988 45         789999999999999887665


Q ss_pred             hhhHHHHHHhhhhccccccccchhhcccc-chHHHHHHHHHHHHHHhhchhHHHhcHHHHHHHcCCCCCchhHHHHHHHH
Q 016882          276 PTEVDEILTELSYVGEDKEVSLREVFHGK-CLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLG  354 (381)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  354 (381)
                      .++..++.++.+. +++++.+++++++++ .++++.+.+.+.+.++++|.+...+|...++++.|+ +.+.+.+++...+
T Consensus       238 ~e~~~~e~~~~~~-~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~-~~~~a~~an~~~g  315 (485)
T KOG0569|consen  238 IEEMLREIEEEEL-EKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGF-TPEEAQYANLGIG  315 (485)
T ss_pred             HHHHHHHHHHhcc-ccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence            5555444444322 234677899999987 566788888999999999999999999999999999 8899999999999


Q ss_pred             HHHHHHhHHHHHH
Q 016882          355 LFKVGSCTLFFMS  367 (381)
Q Consensus       355 ~~~~i~~~~~~~~  367 (381)
                      ...++.++++.+.
T Consensus       316 ~v~~~~t~~~~~l  328 (485)
T KOG0569|consen  316 IVNLLSTLVSPFL  328 (485)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999997754

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.97  E-value=6.9e-29  Score=240.92  Aligned_cols=305  Identities=40%  Similarity=0.596  Sum_probs=241.3

Q ss_pred             HHHHHHHHHHHHHhhhccc--ccccccccccccCCCCCCCccccCCh--hHHHHHHHHHHHHHHHHHHHHHHHHHhhchH
Q 016882           49 AAILPFLFPALGGLLYGYD--IGSTSCATISIESPTLSGISWYDLSS--VEIGLITSGSLYGALIGSILAFNIADILGRR  124 (381)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk  124 (381)
                      ......+....+.+..+++  .+..++....+.++.....  ...+.  .+.+|+.+...++..+++++.|+++|++|||
T Consensus        42 ~~~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~--~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk  119 (513)
T KOG0254|consen   42 FVILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYD--LSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRK  119 (513)
T ss_pred             ehHHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccc--cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            3445556677777888886  5666666666665422211  11222  4669999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHH
Q 016882          125 RELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGS  204 (381)
Q Consensus       125 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  204 (381)
                      +.++++.++..++.+++++++|+++++++|++.|+|.|+.....+.|++|..|++.||...+..+....+|..++..++.
T Consensus       120 ~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~  199 (513)
T KOG0254|consen  120 KTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINY  199 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999966655


Q ss_pred             HhhcccchhHHHHHhhHHHHHHHHHHHhhcccchhHHHHhhccccCcchhhHHHHHHHHHHHhCCCCCCCChhhHHHHH-
Q 016882          205 LLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEIL-  283 (381)
Q Consensus       205 ~l~~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  283 (381)
                      ...+...+||..+.+..+++++..+..+++||+|+|+.+++         +.+|+++.++++++.+..+ ...+.++.+ 
T Consensus       200 ~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g---------~~~~a~~~l~~l~g~~~~~-~~~~~~~~~~  269 (513)
T KOG0254|consen  200 GTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKG---------RLEEAKRSLKRLRGLSPED-VEVELELLKI  269 (513)
T ss_pred             hhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcC---------ChHHHHHHHHHHhCCCCcc-hHHHHHHHHH
Confidence            55433138999999999999998877888999999999976         8899999999999844221 122222222 


Q ss_pred             Hhhh-hccccccccchhhccccchHHHHHHHHHHHHHHhhchhHHHhcHHHHHHHcCCCCCchhHHHHHHHHHHHHHHhH
Q 016882          284 TELS-YVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKVGSCT  362 (381)
Q Consensus       284 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~  362 (381)
                      +... ......+..+.+++++..+++..+.+.+..+++++|++...+|.+++++..|.++..  ...+.+.++.++++++
T Consensus       270 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~--~~~~~~~~~v~~~~t~  347 (513)
T KOG0254|consen  270 KLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT--FLASIILGVVNFLGTL  347 (513)
T ss_pred             HHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch--HHHHHHHHHHHHHHHH
Confidence            1111 111122224677777567788888999999999999999999999999999983332  7788888888888888


Q ss_pred             HHHHH
Q 016882          363 LFFMS  367 (381)
Q Consensus       363 ~~~~~  367 (381)
                      ++.+.
T Consensus       348 ~~~~l  352 (513)
T KOG0254|consen  348 VATYL  352 (513)
T ss_pred             HHHHH
Confidence            87533

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.97  E-value=8.1e-29  Score=245.04  Aligned_cols=273  Identities=18%  Similarity=0.213  Sum_probs=217.2

Q ss_pred             HHHHHHHHHHHHHHhhhcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHH
Q 016882           48 SAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRREL  127 (381)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l  127 (381)
                      +..|.++++++++.+..+++...++..+|.+.++       +|++..+.+++.+++.++.+++++++|+++||+|||+.+
T Consensus       163 ~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~-------~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~l  235 (742)
T TIGR01299       163 RFQWALFFVLGLALMADGVEVFVVGFVLPSAEKD-------LCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCL  235 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence            4455566777788888899998899999998876       899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhh
Q 016882          128 ILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLV  207 (381)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  207 (381)
                      +++.++.+++.++++++++++.++++|++.|++.|+..+...+++.|++|+++|++.+++...++.+|.++++.++..+.
T Consensus       236 ii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il  315 (742)
T TIGR01299       236 LICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAII  315 (742)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999887766


Q ss_pred             ccc------------chhHHHHHhhHHHHHHHHHHHhhcccchhHHHHhhccccCcchhhHHHHHHHHHHHhCCCCCCC-
Q 016882          208 DLV------------AGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDS-  274 (381)
Q Consensus       208 ~~~------------~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  274 (381)
                      ...            .+||+.+++.+++.++.++..+++||+|+|+..++         +.+|+++.+++++..+.... 
T Consensus       316 ~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~g---------r~~eA~~iL~~i~~~n~~~~~  386 (742)
T TIGR01299       316 PHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENG---------KHDEAWMILKLIHDTNMRAKG  386 (742)
T ss_pred             HhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCC---------CHHHHHHHHHHHhcCCCCCcC
Confidence            422            27999999999888888888888999999998876         67899999999876543211 


Q ss_pred             Chhh---HHHHHHhhh-----h-c-ccc----------------ccccchhhccccchHHHHHHHHHHHHHHhhchhHHH
Q 016882          275 APTE---VDEILTELS-----Y-V-GED----------------KEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVL  328 (381)
Q Consensus       275 ~~~~---~~~~~~~~~-----~-~-~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (381)
                      ...+   .++.+....     + + +..                .+.+++++|+.+.+++.++++++ ++....+++.+.
T Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~-wf~~~~~yygl~  465 (742)
T TIGR01299       387 HPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGV-WFTLSFGYYGLS  465 (742)
T ss_pred             chhHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHH-HHHHHHHHHHHH
Confidence            1110   011000000     0 0 000                01135667776666665555554 555666789999


Q ss_pred             hcHHHHHHH
Q 016882          329 YYAASILQS  337 (381)
Q Consensus       329 ~~~~~~~~~  337 (381)
                      .|.|.++++
T Consensus       466 ~w~P~~~~~  474 (742)
T TIGR01299       466 VWFPDMIKH  474 (742)
T ss_pred             HHHHHHHHH
Confidence            999988644

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.96  E-value=2.5e-27  Score=229.82  Aligned_cols=276  Identities=20%  Similarity=0.247  Sum_probs=202.6

Q ss_pred             HHHHHHHHHHHHhhhcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Q 016882           50 AILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELIL  129 (381)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~  129 (381)
                      .+..+++++++.+.++++...++...+.+..+...  ++.+.+..+.+++.+.+.++..++++++|+++||+|||+.+.+
T Consensus        14 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~   91 (502)
T TIGR00887        14 HFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYH--GKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGM   91 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence            34455777788899999999999888876553111  1135667788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhch------HHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHH
Q 016882          130 AALLYLVGALVTALAPD------FIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIG  203 (381)
Q Consensus       130 ~~~~~~~~~~~~~~~~~------~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  203 (381)
                      +.++..++.++++++++      ++.++++|++.|++.|...+..+.++.|++|+++|++++++.+....+|.++++.++
T Consensus        92 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~  171 (502)
T TIGR00887        92 ELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVA  171 (502)
T ss_pred             HHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998888765      788999999999999999999999999999999999999999999999999999888


Q ss_pred             HHhhc----------------------ccchhHHHHHhhHHHHHHHHHHHhhcccchhHHHHhhccccCcchhhH-HHHH
Q 016882          204 SLLVD----------------------LVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLR-ESAI  260 (381)
Q Consensus       204 ~~l~~----------------------~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  260 (381)
                      ..+..                      ..++||+.|.+.++++++.++..+++||+|+|+..++         ++ ++++
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~---------~~~~~a~  242 (502)
T TIGR00887       172 LIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVA---------KDVEQAA  242 (502)
T ss_pred             HHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhC---------cchHHHH
Confidence            76542                      1137999999998888888788888999999998765         22 3455


Q ss_pred             HHHHHHhCCCCCCCChhhHHHHHHhhhhccccccccchhhccccchH---HHHHHHHHHHHHHhhchhHHHhcHHHHHHH
Q 016882          261 SCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLK---ALIIGAGLVLFQQITGQPSVLYYAASILQS  337 (381)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (381)
                      +.+++.+..+..++ .++.++.+++    ++..+.+++++++++..+   +..+++...++.+...++....|.|.++++
T Consensus       243 ~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~  317 (502)
T TIGR00887       243 SDMSAVLQVKIEAE-PDEVEKASTA----VEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSA  317 (502)
T ss_pred             HHHHHHhccccccC-cccccchhcc----ccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHH
Confidence            55666544322111 1111111111    111223577887643222   233333333333333345667788999998


Q ss_pred             cCCC
Q 016882          338 AGFS  341 (381)
Q Consensus       338 ~g~~  341 (381)
                      .|++
T Consensus       318 ~G~~  321 (502)
T TIGR00887       318 IGYS  321 (502)
T ss_pred             HcCC
Confidence            8883

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.96  E-value=2.5e-28  Score=218.53  Aligned_cols=287  Identities=15%  Similarity=0.088  Sum_probs=226.8

Q ss_pred             hHHHHHHHHHHHHHHhhhcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHH
Q 016882           47 VSAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRE  126 (381)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~  126 (381)
                      .+.++.+++.+.+++..+++.+-+.+.+.|.+.++       .++|.+|.|++.+.+.+.+.++.++.|.++||.++|+.
T Consensus        24 ~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~-------~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~f   96 (448)
T COG2271          24 KRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIED-------GGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYF   96 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcee
Confidence            33455677889999999999999999999999998       78999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHH--H
Q 016882          127 LILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIG--S  204 (381)
Q Consensus       127 l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~--~  204 (381)
                      +.+++++.++.+++++++++.+.+.++.++.|..+|..+|.+...+..|+|+++||+..++++.+.++|+.+.+++.  +
T Consensus        97 m~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la  176 (448)
T COG2271          97 MAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLA  176 (448)
T ss_pred             ehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999  8


Q ss_pred             HhhcccchhHHHHHhhHHHHHHHH-HHHhhcccchhHHHHhhccccCcchhhHHHHHHHHHHHhCCCCCCCChhhHHHHH
Q 016882          205 LLVDLVAGWRYMYGASTPLAVIMG-MGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEIL  283 (381)
Q Consensus       205 ~l~~~~~~w~~~f~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (381)
                      .+..+. +||..|++.++++++.. +.++..+|+|+..-..          ..||.+       +         |..+..
T Consensus       177 ~~~~~~-~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP----------~ie~~~-------~---------d~~e~~  229 (448)
T COG2271         177 FFAFHG-GWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLP----------PIEEYR-------G---------DPLEIY  229 (448)
T ss_pred             HHHhcc-chhHHHHHHHHHHHHHHHHHHHHhCCCccccCCC----------CHHHhh-------c---------Cchhhh
Confidence            888776 99999999999988754 5555688888632111          011111       0         000000


Q ss_pred             Hhhhhccccccccchhhcccc-chHHHHHHHHHHHHHHhhchhHHHhcHHHHHHHc-CCCCCchhHHHHHHHHHHHHHHh
Q 016882          284 TELSYVGEDKEVSLREVFHGK-CLKALIIGAGLVLFQQITGQPSVLYYAASILQSA-GFSAASDATRVSILLGLFKVGSC  361 (381)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~  361 (381)
                         +++++.+..+.++++.+. ...+.++.+.+..+..+..-+.+..|.|.++.+. |+ +..++....+++-..++.|+
T Consensus       230 ---~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~-s~~~a~~a~~lfE~agl~G~  305 (448)
T COG2271         230 ---EEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGF-SLVKANWAISLFEVAGLPGT  305 (448)
T ss_pred             ---hhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCC-CHHHHHHHHHHHHHHhhHHH
Confidence               001111113344444322 1113333333333334444678899999998776 88 88999999999999999999


Q ss_pred             HHHHHHHHHH
Q 016882          362 TLFFMSNVYF  371 (381)
Q Consensus       362 ~~~~~~~~~~  371 (381)
                      +++.+.++-+
T Consensus       306 Ll~GwlSDkl  315 (448)
T COG2271         306 LLAGWLSDKL  315 (448)
T ss_pred             HHHHHHHHHh
Confidence            9988775433

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.96  E-value=2.5e-26  Score=221.15  Aligned_cols=308  Identities=33%  Similarity=0.535  Sum_probs=217.6

Q ss_pred             HHHHHHHHHHHHHhhhcccccccccccccccCCCCC-CCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHH
Q 016882           49 AAILPFLFPALGGLLYGYDIGSTSCATISIESPTLS-GISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRREL  127 (381)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l  127 (381)
                      ..+...+++.++.+...++........+.+..+..- ...+-+.+..+.+++.+++.++..++++++|+++||+|||+++
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~  104 (481)
T TIGR00879        25 KVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSL  104 (481)
T ss_pred             HHHHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHH
Confidence            344445666667788888888888888877665110 0000124489999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhc---hHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHH-
Q 016882          128 ILAALLYLVGALVTALAP---DFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIG-  203 (381)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~---~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~-  203 (381)
                      .++.++..++.+++.+..   +++.++++|++.|++.+...+....++.|++|+++|++++++.+.+..+|..+++.++ 
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~  184 (481)
T TIGR00879       105 LIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGS  184 (481)
T ss_pred             HHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            999999999998886543   4568999999999999999999999999999999999999999999999999999999 


Q ss_pred             --HHhhcccchhHHHHHhhHHHHHHHHHHHhhcccchhHHHHhhccccCcchhhHHHHHHHHHHHhCCCCCCCChhh-HH
Q 016882          204 --SLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTE-VD  280 (381)
Q Consensus       204 --~~l~~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  280 (381)
                        ....+.. +||+.|++.++..++.++..+++||+|++...++         +.+++++..++.......+....+ .+
T Consensus       185 ~~~~~~~~~-~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (481)
T TIGR00879       185 GKVSLNNTL-GWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKG---------RVEEARKSLARLRGTSGEDKELLDELE  254 (481)
T ss_pred             HhhcCCCCc-cHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcC---------ChHHHHHHHHHHhCCCCCcHHHHHHHH
Confidence              5555555 9999999977777777777778999988765433         122233333333322221111100 00


Q ss_pred             HHHHhhhhccccccccchhhcccc--chHHHHHHHHHHHHHHhhchhHHHhcHHHHHHHcCCCCCchhHHHHHHHHHHHH
Q 016882          281 EILTELSYVGEDKEVSLREVFHGK--CLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKV  358 (381)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  358 (381)
                      ........+.+..+..+.+.++..  ..++.++...+..+....+.....+|.|+++++.|+ +...+.....+..+..+
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~  333 (481)
T TIGR00879       255 LIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGV-STDHAFLVSIIVGAVNF  333 (481)
T ss_pred             HHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCC-CchHHHHHHHHHHHHHH
Confidence            001110111111112234444322  235555656666666666677788999999999999 55777778888888888


Q ss_pred             HHhHHHHHH
Q 016882          359 GSCTLFFMS  367 (381)
Q Consensus       359 i~~~~~~~~  367 (381)
                      ++.+++...
T Consensus       334 ~~~~~~g~l  342 (481)
T TIGR00879       334 AFTFVAIFL  342 (481)
T ss_pred             HHHHHHHHH
Confidence            888776543

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.96  E-value=6.4e-26  Score=219.00  Aligned_cols=297  Identities=29%  Similarity=0.484  Sum_probs=214.3

Q ss_pred             HHHHHHHHHHHhhhcccccccccccccccCCCCCC-CccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Q 016882           51 ILPFLFPALGGLLYGYDIGSTSCATISIESPTLSG-ISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELIL  129 (381)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~  129 (381)
                      ....+.++++.+..+++...+++..+.+.++-.+. ..+++.+..+.+++.+++.++..++++++|+++||+|||+++++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~   90 (479)
T PRK10077         11 FSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKI   90 (479)
T ss_pred             HHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            34446667788999999999999888776652211 12248899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHh------------chHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHH
Q 016882          130 AALLYLVGALVTALA------------PDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMV  197 (381)
Q Consensus       130 ~~~~~~~~~~~~~~~------------~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~  197 (381)
                      +.++.+++.++++++            +.++.++++|++.|++.|...+...++++|++|+++|++++++.+.+..+|.+
T Consensus        91 ~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~  170 (479)
T PRK10077         91 AAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQL  170 (479)
T ss_pred             HHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHH
Confidence            999999888877763            23567889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhc-------ccchhHHHHHhhHHHHHHHHHHHhhcccchhHHHHhhccccCcchhhHHHHHHHHHHHhCCC
Q 016882          198 GGYGIGSLLVD-------LVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQS  270 (381)
Q Consensus       198 ~~~~~~~~l~~-------~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (381)
                      +++.++..+..       ...+||+.|++.+++.++..+..+++||+|+++..++         +.+++++..+++.+.+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~---------~~~~~~~~~~~~~~~~  241 (479)
T PRK10077        171 VVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRG---------KQEQAEGILRKIMGNT  241 (479)
T ss_pred             HHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcC---------CHHHHHHHHHHHcCCh
Confidence            99887765542       1238999999998888877777778999998875543         3345555555554332


Q ss_pred             CCCCChhhHHHHHHhhhhccccccccchhhccccchHHHHHHHHHHHHHHhhchhHHHhcHHHHHHHcCCCCCchhHHHH
Q 016882          271 IGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVS  350 (381)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  350 (381)
                      ..   ....++..+....+.    ...+..+. .........+....+.+..+++...+|.|++.++.|. +...+....
T Consensus       242 ~~---~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~-~~~~~~~~~  312 (479)
T PRK10077        242 LA---TQALQEIKHSLDHGR----KTGGKLLM-FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGA-STDIALLQT  312 (479)
T ss_pred             hH---HHHHHHHHHHHHHhh----hhhhhhcc-hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCC-CCchHHHHH
Confidence            11   111111111110000    00011111 1112223333445566667777888999999999998 555566666


Q ss_pred             HHHHHHHHHHhHHHH
Q 016882          351 ILLGLFKVGSCTLFF  365 (381)
Q Consensus       351 ~~~~~~~~i~~~~~~  365 (381)
                      ...++..+++.+++.
T Consensus       313 ~~~~~~~~i~~~~~g  327 (479)
T PRK10077        313 IIVGVINLTFTVLAI  327 (479)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            677777777776654

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.96  E-value=1.3e-26  Score=210.17  Aligned_cols=254  Identities=22%  Similarity=0.245  Sum_probs=209.7

Q ss_pred             HHHHHHHHHhhhcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 016882           53 PFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAAL  132 (381)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~  132 (381)
                      .++...++.|..+.+.......+|++.+|       +|+|..+.|++.++|.++..+++++...++||+.||++++..+.
T Consensus        14 ~l~aLa~~~F~igttEfv~~gLLp~iA~d-------l~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~   86 (394)
T COG2814          14 ALLALALAAFAIGTTEFVPVGLLPPIAAD-------LGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLA   86 (394)
T ss_pred             HHHHHHHHHHHHHhHHHHHHhchHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHH
Confidence            34556677788899999999999999998       99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccch
Q 016882          133 LYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAG  212 (381)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~  212 (381)
                      +++++++++++++||+.++++|++.|+..|..++...++..++.|+++|++++++...+..++.++|.+++.++.+.. |
T Consensus        87 lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~-G  165 (394)
T COG2814          87 LFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLF-G  165 (394)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHh-h
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999998 9


Q ss_pred             hHHHHHhhHHHHHHHHHHH-hhcccchhHHHHhhccccCcchhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhhccc
Q 016882          213 WRYMYGASTPLAVIMGMGM-WWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGE  291 (381)
Q Consensus       213 w~~~f~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (381)
                      ||+.|++.++++++.++.. ..+|  |+...                                             ++..
T Consensus       166 WR~~F~~ia~l~ll~~~~~~~~lP--~~~~~---------------------------------------------~~~~  198 (394)
T COG2814         166 WRATFLAIAVLALLALLLLWKLLP--PSEIS---------------------------------------------GSLP  198 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCC--CccCC---------------------------------------------CCCC
Confidence            9999999999998865544 4577  22000                                             0001


Q ss_pred             cccccchhhccccchHHHHHHHHHHHHHHhhchhHHHhcHHHHHHHcCCCCCchhHHHHHHHHHHHHHHhHHHH
Q 016882          292 DKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKVGSCTLFF  365 (381)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~  365 (381)
                      ....+..+.++++..+..++...+...   ..+..++|..|++.+..|+ +.+.......++++..++|+.++-
T Consensus       199 ~~~~~~~~~l~~p~v~~~l~~t~l~~~---g~F~~ftYi~P~L~~v~g~-s~~~vs~~Ll~~Gv~~~~Gn~~gG  268 (394)
T COG2814         199 GPLRTLLRLLRRPGVLLGLLATFLFMT---GHFALYTYIRPFLESVAGF-SVSAVSLVLLAFGIAGFIGNLLGG  268 (394)
T ss_pred             cchhHHHHHhcCchHHHHHHHHHHHHc---chhhhHHhHHHHHHHccCC-CHhHHHHHHHHHHHHHHHHHHHHh
Confidence            111224556666644444433333222   2234455555666666799 888999999999999999999865

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.95  E-value=3.6e-26  Score=216.14  Aligned_cols=286  Identities=17%  Similarity=0.191  Sum_probs=207.1

Q ss_pred             HHHHHHHHHHHhhhcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Q 016882           51 ILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILA  130 (381)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~  130 (381)
                      +...+.++++++.++++....+...|.+.++       +|++..+.+++.+++.+++.+++++.|+++||+|||+++..+
T Consensus         7 ~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~-------~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~   79 (412)
T TIGR02332         7 RRLIIFLFILFIFSFLDRINIGFAGLTMGKD-------LGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGI   79 (412)
T ss_pred             hHHHHHHHHHHHHHHhhhhhHHHHHHhhHhh-------cCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHH
Confidence            3445667777788999999999999988887       899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcc-
Q 016882          131 ALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDL-  209 (381)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-  209 (381)
                      .++++++.+++++++|++.++++|++.|++.+...+....++.|++|+++|++++++++.+..+|..+++++++.+.+. 
T Consensus        80 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~  159 (412)
T TIGR02332        80 MVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALD  159 (412)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999988642 


Q ss_pred             ----cchhHHHHHhhHHHHHHHH-HHHhhcccchhHHHHhhccccCcchhhHHHHHHHHHHHhCCCCCCCChhhHHHHHH
Q 016882          210 ----VAGWRYMYGASTPLAVIMG-MGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILT  284 (381)
Q Consensus       210 ----~~~w~~~f~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (381)
                          ..|||+.|++.+++.++.. +..+++||+|+..         ++. ..++.+...++++.+..+.++.+      +
T Consensus       160 ~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~---------~~l-~~~~~~~~~~~~~~~~~~~~~~~------~  223 (412)
T TIGR02332       160 GLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKA---------KWL-DEEDKKALKEMIDNDQLTLEQPE------G  223 (412)
T ss_pred             CCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccC---------CCC-CHHHHHHHHHHHHhccccccccc------c
Confidence                2399999999988877644 4555678887521         000 00111111111111110000000      0


Q ss_pred             hhhhccccccccchhhccccchHHHHHHHHHHHHHHhhchhHHHhcHHHHHHHc--CCCCCchhHHHHHHHHHHHHHHhH
Q 016882          285 ELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSA--GFSAASDATRVSILLGLFKVGSCT  362 (381)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~i~~~  362 (381)
                      +.++.+......++++++ +   .. +...+..+....++..+..|.|.++++.  |+ +..++.....+..+..+++.+
T Consensus       224 ~~~~~~~~~~~~~~~~~~-~---~~-~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~-s~~~~~~~~~~~~l~~~~g~l  297 (412)
T TIGR02332       224 AFAHAAMPQRSMLREIFT-P---AI-MLYTLAYFCLTNTLSAINIWTPQILQSFNQGS-SNIMIGLLAAIPQFCTIFGMI  297 (412)
T ss_pred             ccccccccHHHHHHHhcC-h---HH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-cHHHhHHHhhHHHHHHHHHHH
Confidence            000000011112333332 2   22 2233333444455677888999999885  45 455666677777777777777


Q ss_pred             HHH
Q 016882          363 LFF  365 (381)
Q Consensus       363 ~~~  365 (381)
                      ++.
T Consensus       298 ~~g  300 (412)
T TIGR02332       298 WWS  300 (412)
T ss_pred             HHH
Confidence            644

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.94  E-value=3.6e-25  Score=210.86  Aligned_cols=270  Identities=13%  Similarity=0.091  Sum_probs=198.6

Q ss_pred             HHHHHHHhhhcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 016882           55 LFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLY  134 (381)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~  134 (381)
                      ....++++...++....+...|.+.++       +|++..+.+++.+++.+++.+++++.|+++||+|||+++.++.++.
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~   98 (434)
T PRK11663         26 ITMYLGYALFYFTRKSFNAAMPEMLAD-------LGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIAT   98 (434)
T ss_pred             HHHHHHHHHHHHhhhhHHHhhHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHH
Confidence            445556667777777778888888887       8999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhH
Q 016882          135 LVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWR  214 (381)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~  214 (381)
                      +++.++++++++++.+++.|++.|++.|...+....++.|++|+++|++++++.+.+..+|..+++.+++.+.+.. +||
T Consensus        99 ~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~-gw~  177 (434)
T PRK11663         99 GIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHY-GWR  177 (434)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cHH
Confidence            9999999999999999999999999999889999999999999999999999999999999999999999998887 999


Q ss_pred             HHHHhhHHHHHHH-HHHHhhcccchhHHHHhhccccCcchhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhhccccc
Q 016882          215 YMYGASTPLAVIM-GMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDK  293 (381)
Q Consensus       215 ~~f~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (381)
                      +.|++.+++.++. ++..+++||+|++....   +.++.  + ++++                    +..++    ++++
T Consensus       178 ~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~---~~~~~--~-~~~~--------------------~~~~~----~~~~  227 (434)
T PRK11663        178 YGMMIAGIIAIVVGLFLCWRLRDKPQAMGLP---SVGEW--R-HDAL--------------------ELAQQ----QEGA  227 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCHhhcCCC---Ccccc--c-cccc--------------------ccchh----cccc
Confidence            9999988877654 34445678876532100   00000  0 0000                    00000    0000


Q ss_pred             cccchh-----hccccchHHHHHHHHHHHHHHhhchhHHHhcHHHHHH-HcCCCCCchhHHHHHHHHHHHHHHhHHHHHH
Q 016882          294 EVSLRE-----VFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQ-SAGFSAASDATRVSILLGLFKVGSCTLFFMS  367 (381)
Q Consensus       294 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~  367 (381)
                      +.++++     .++++..+..    .+..+.....+..+..|.|.+++ +.|+ +..++.....++.+..+++.+++...
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~p~~l~~~~g~-s~~~a~~~~~~~~~~~~~g~~~~g~l  302 (434)
T PRK11663        228 GLSRKEILTKYVLLNPYIWLL----SFSYVLVYVVRAAINDWGNLYMSETLGV-DLVTANSAVSMFELGGFIGALVAGWG  302 (434)
T ss_pred             CCChhhhHHHHHhcChHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            111222     3333322222    22222222334556678888875 4688 66777777888888888888875544

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.94  E-value=2.7e-24  Score=207.88  Aligned_cols=268  Identities=19%  Similarity=0.265  Sum_probs=189.0

Q ss_pred             HHHHHHHHHhhhcccccccccccccccCCCCCCCccccCC--hh--HHHH--HHHHHHHHHHHHHHHHHHHHHhhchHHH
Q 016882           53 PFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLS--SV--EIGL--ITSGSLYGALIGSILAFNIADILGRRRE  126 (381)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~--~~~~~~~~~~~~~~~~g~l~d~~Grk~~  126 (381)
                      ..+..++++++.++|...++...|.+.++       ++.+  +.  ..+.  +.++.++++.++++++|+++||+|||++
T Consensus        17 ~~~~~~~g~~~~~~d~~~~~~~~~~i~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~   89 (490)
T PRK10642         17 AITAASLGNAMEWFDFGVYGFVAYALGKV-------FFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKI   89 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH
Confidence            34556778899999999999988888776       4322  21  1222  2477889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhchHHH--------HHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHH
Q 016882          127 LILAALLYLVGALVTALAPDFII--------MVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVG  198 (381)
Q Consensus       127 l~~~~~~~~~~~~~~~~~~~~~~--------~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~  198 (381)
                      +.++++++++++++++++++++.        ++++|+++|++.|+..+...+++.|++|+++|++..++...+..+|..+
T Consensus        90 l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~l  169 (490)
T PRK10642         90 LAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVL  169 (490)
T ss_pred             HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence            99999999999999999999864        8899999999999999999999999999999999999999888888888


Q ss_pred             HHHHHHHhhc-------ccchhHHHHHhhHHHHHHHHHHHhhcccchhHHHHhhccccCcchhhHHHHHHHHHHHhCCCC
Q 016882          199 GYGIGSLLVD-------LVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSI  271 (381)
Q Consensus       199 ~~~~~~~l~~-------~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (381)
                      ++.+...+..       ...|||+.|++.+++.++.+++..++||+|++...++         +.++..           
T Consensus       170 g~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~---------~~~~~~-----------  229 (490)
T PRK10642        170 GAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVD---------KLEQGD-----------  229 (490)
T ss_pred             HHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHH---------hhhhhc-----------
Confidence            8876654432       1239999999988776666666667899998643221         000000           


Q ss_pred             CCCChhhHHHHHHhhhhccccccccchhhccccchHHHHHHHHHHHHHHhhchhHHHhcHHHHHHH-cCCCCCchhHHHH
Q 016882          272 GDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVS  350 (381)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~  350 (381)
                      .        +   .   ..+.++.++++++++ +++...+..... +.....++.+..|.|.++++ .|+ +...+....
T Consensus       230 ~--------~---~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~l~~~~g~-s~~~~~~~~  292 (490)
T PRK10642        230 R--------E---G---LQDGPKVSFKEIATK-HWRSLLTCIGLV-IATNVTYYMLLTYMPSYLSHNLHY-SEDHGVLII  292 (490)
T ss_pred             c--------c---c---ccccccCCHHHHHHH-hHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHH
Confidence            0        0   0   001112345566653 233333333222 22334456677788888864 588 545555555


Q ss_pred             HHHHHHHHHHhHHH
Q 016882          351 ILLGLFKVGSCTLF  364 (381)
Q Consensus       351 ~~~~~~~~i~~~~~  364 (381)
                      ....+..+++.+++
T Consensus       293 ~~~~~~~~~~~~~~  306 (490)
T PRK10642        293 IAIMIGMLFVQPVM  306 (490)
T ss_pred             HHHHHHHHHHHHHH
Confidence            56666666665553

>TIGR00898 2A0119 cation transport protein

Probab=99.93  E-value=2.9e-24  Score=208.81  Aligned_cols=264  Identities=22%  Similarity=0.321  Sum_probs=194.9

Q ss_pred             cccccccCCCCCCCccccCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhchHHH
Q 016882           73 CATISIESPTLSGISWYDLS---SVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFII  149 (381)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~  149 (381)
                      ...+.+.+|       +|++   ..+.+++.+++.++..++++++|+++||+|||++++++.++..++.++.+++++++.
T Consensus       110 ~~~~~i~~e-------~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~  182 (505)
T TIGR00898       110 TFSSTIVTE-------WDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTV  182 (505)
T ss_pred             cccccEEEE-------ecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHH
Confidence            345666665       7998   899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHH
Q 016882          150 MVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGM  229 (381)
Q Consensus       150 ~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~  229 (381)
                      ++++|++.|++.+...+...+++.|++|+++|+.+.++...+..+|.++++.++..+.    +||+.|++.+++.++..+
T Consensus       183 ~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~----~wr~~~~~~~i~~~~~~~  258 (505)
T TIGR00898       183 FLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP----DWRWLQLAVSLPTFLFFL  258 (505)
T ss_pred             HHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999887663    599999999999888777


Q ss_pred             HHhhcccchhHHHHhhccccCcchhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhhccccccccchhhccccchHHH
Q 016882          230 GMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKAL  309 (381)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (381)
                      ..+++||+|+|+..++         +.+|+++.+++..+.+......+..+. ..+.+.+++.++.+++++++++..+..
T Consensus       259 ~~~~~~esp~~l~~~~---------~~~~a~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~  328 (505)
T TIGR00898       259 LSWFVPESPRWLISQG---------RIEEALKILQRIAKINGKKLPAEVLSL-SLEKDLSSSKKQYSFLDLFRTPNLRKT  328 (505)
T ss_pred             HHHhcCCChHHHHHCC---------CHHHHHHHHHHHHHHcCCCCCHHHHhh-hhhhhhhhccCCCcHHHHhCChHHHHH
Confidence            7788999999987765         456666666665433322211111111 101111112224577889988877776


Q ss_pred             HHHHHHHHHHHhhchhHHHhcHHHHHHHcCCCCCchhHHHHHHHHHHHHHHhHHHH
Q 016882          310 IIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKVGSCTLFF  365 (381)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~  365 (381)
                      .+.+.+.++.....++..    +......+. +   ......+.++..+++.++..
T Consensus       329 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~---~~~~~~~~~~~~i~~~~~~~  376 (505)
T TIGR00898       329 TLCLMMLWFTTAFSYYGL----VLDLGNLGG-N---IYLDLFISGLVELPAKLITL  376 (505)
T ss_pred             HHHHHHHHHHHHHHHHHH----hccccccCC-C---hHHHHHHHHHHHHHHHHHHH
Confidence            666555555432222222    222333344 1   33444455555566655543

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.93  E-value=6.8e-24  Score=200.57  Aligned_cols=264  Identities=25%  Similarity=0.304  Sum_probs=201.0

Q ss_pred             HHHHHHHHHHHHHhhhcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Q 016882           49 AAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELI  128 (381)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~  128 (381)
                      +.+..........+.++++....+...|.+.++       +|.++.+.+++.+.+.++..+++++.|+++||+|||+++.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~   84 (406)
T PRK11551         12 RLALTIGLCFLVALLEGLDLQSAGVAAPRMAQE-------FGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILI   84 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHH
Confidence            445555667777788899999999999999887       8999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhc
Q 016882          129 LAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVD  208 (381)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  208 (381)
                      .+.++.+++.+++.++++++.+++.|++.|++.+...+....++.|++|+++|++++++.+.+..+|..+++.++..+.+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~  164 (406)
T PRK11551         85 VSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAG  164 (406)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988887


Q ss_pred             ccchhHHHHHhhHHHHHHHHH-HHhhcccchhHHHHhhccccCcchhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhh
Q 016882          209 LVAGWRYMYGASTPLAVIMGM-GMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELS  287 (381)
Q Consensus       209 ~~~~w~~~f~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (381)
                      .. +||+.|++.+++.++.++ ...++||+|++...+.     +    .++.                            
T Consensus       165 ~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~----~~~~----------------------------  206 (406)
T PRK11551        165 DA-AWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAG-----A----GKQR----------------------------  206 (406)
T ss_pred             cc-CHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccC-----c----chhh----------------------------
Confidence            76 999999998877665443 4455788765321100     0    0000                            


Q ss_pred             hccccccccchhhccccchHHHHHHHHHHHHHHhhchhHHHhcHHHHHHHcCCCCCchhHHHHHHHHHHHHHHhHHHH
Q 016882          288 YVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKVGSCTLFF  365 (381)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~  365 (381)
                            +...+..++++..++... .....+......+....|.|.++++.|+ +...........++..+++.++..
T Consensus       207 ------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~g~-s~~~~~~~~~~~~~~~~~~~~~~g  276 (406)
T PRK11551        207 ------APVLRALFGEGRATATLL-LWISYFFTLIVLYFLLNWLPSLLVGQGL-SRSQAGLVQIAFNIGGALGSLLIG  276 (406)
T ss_pred             ------hhhHHHHhhhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCC-ChhhhhHHHHHHHHHHHHHHHHHH
Confidence                  000011111111111111 1111222223345566788899888888 667777777777788877777644

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.93  E-value=8.3e-24  Score=199.51  Aligned_cols=183  Identities=24%  Similarity=0.369  Sum_probs=164.7

Q ss_pred             HHHHHHHHHHHhhhcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Q 016882           51 ILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILA  130 (381)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~  130 (381)
                      +..+....++++..+++....+...+.+.++       +|++..+.+++.+++.++..+++++.|+++||+|||+++.++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~   83 (405)
T TIGR00891        11 WNAFSAAWLGWLLDAFDFFLVALVLAEVAGE-------FGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTS   83 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            3445667778888899999999999999887       899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhccc
Q 016882          131 ALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV  210 (381)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  210 (381)
                      .++.+++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|+++.++.+.+..+|..+++.+++.+.+..
T Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~  163 (405)
T TIGR00891        84 IVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVW  163 (405)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988765


Q ss_pred             c-hhHHHHHhhHHHHHHHHHHHhhcccchhH
Q 016882          211 A-GWRYMYGASTPLAVIMGMGMWWLPASPRW  240 (381)
Q Consensus       211 ~-~w~~~f~i~~~~~~~~~~~~~~~~~~~~~  240 (381)
                      + +||+.|++.+++.++.++.....||++++
T Consensus       164 ~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~  194 (405)
T TIGR00891       164 GDGWRALFFISILPIIFALWLRKNIPEAEDW  194 (405)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHhCCCChhH
Confidence            2 49999998777766666666667887654

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.93  E-value=9.2e-24  Score=200.94  Aligned_cols=268  Identities=16%  Similarity=0.214  Sum_probs=199.5

Q ss_pred             HHHHHHHHhhhcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 016882           54 FLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALL  133 (381)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~  133 (381)
                      ++...++++..+++.....+..|.+.++       +|+++.+.+++.+++.++..+++++.|+++||+|||+++.++.++
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~-------~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~   92 (426)
T PRK12307         20 LFSAWLGYVFDGFDFMLIFYIMYLIKAD-------LGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVA   92 (426)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence            3556677778888888888899988877       899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchh
Q 016882          134 YLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGW  213 (381)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w  213 (381)
                      .+++.++++++++++.++++|++.|++.+...+....++.|++|+++|+++.++.+.+..+|.++++.+.+.+.+.. +|
T Consensus        93 ~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~-~w  171 (426)
T PRK12307         93 YSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAY-GW  171 (426)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccC-CH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999888877 99


Q ss_pred             HHHHHhhHHHHHHHHHHHhhcccchhHHHHhhccccCcchhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhhccccc
Q 016882          214 RYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDK  293 (381)
Q Consensus       214 ~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (381)
                      |+.|++.++..++.+......||++++...+.                     ..+  .++..           ...+..
T Consensus       172 ~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~---------------------~~~--~~~~~-----------~~~~~~  217 (426)
T PRK12307        172 RAAFFVGLLPVLLVIYIRARAPESKEWEEAKL---------------------SGK--GKHSQ-----------SAWSVF  217 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCChHHHHhhh---------------------hcc--ccccc-----------cchhhh
Confidence            99998865443333322223455443211000                     000  00000           000011


Q ss_pred             cccchhhccccchHHHHHHHHHHHHHHhhchhHHHhcHHHHHHHcCCCCCchhHHHHHHHHHHHHHHhHHHH
Q 016882          294 EVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKVGSCTLFF  365 (381)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~  365 (381)
                      +.+++++++++.++.......+.++ .+.....+..+.|.++++.|+ +.........+.++..+++.+++.
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~g~~~~g  287 (426)
T PRK12307        218 SLSMKGLFNRAQFPLTLCVFIVLFS-IFGANWPIFGLLPTYLAGEGF-DTGVVSNLMTAAAFGTVLGNIVWG  287 (426)
T ss_pred             hHHHHHHHhhchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2245677777655544443333222 223333456678888888888 556666666677777777777644

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.93  E-value=8.9e-24  Score=201.27  Aligned_cols=183  Identities=19%  Similarity=0.254  Sum_probs=144.9

Q ss_pred             HHHHHHHHHhhhcccccccccccccccCCCCCCCccccCChhHHHHH---HHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Q 016882           53 PFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLI---TSGSLYGALIGSILAFNIADILGRRRELIL  129 (381)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~  129 (381)
                      .++..+++++..++|...++...|.+.++-.+    .+.+..+.+..   .++.+++..++++++|+++||+|||+++.+
T Consensus        23 ~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~   98 (432)
T PRK10406         23 AIVGASSGNLVEWFDFYVYSFCSLYFAHIFFP----SGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLI   98 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            44556677888999999999988888776111    03445544443   444555556999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhchHH--------HHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHH
Q 016882          130 AALLYLVGALVTALAPDFI--------IMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYG  201 (381)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~--------~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~  201 (381)
                      +.++++++++++++++++.        .++++|+++|++.|..++...+++.|++|+++|++..++.+.+...|..+++.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~  178 (432)
T PRK10406         99 SVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALL  178 (432)
T ss_pred             HHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988764        58899999999999999999999999999999999999998888888888877


Q ss_pred             HHHHhhc-------ccchhHHHHHhhHHHHHHHHHHHhhcccchh
Q 016882          202 IGSLLVD-------LVAGWRYMYGASTPLAVIMGMGMWWLPASPR  239 (381)
Q Consensus       202 ~~~~l~~-------~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~  239 (381)
                      +...+..       ...|||+.|++.+++.++.+......||+|+
T Consensus       179 ~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~  223 (432)
T PRK10406        179 VVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQ  223 (432)
T ss_pred             HHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence            6655432       1239999999988887766554445666653

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.93  E-value=7.5e-24  Score=203.79  Aligned_cols=282  Identities=15%  Similarity=0.097  Sum_probs=204.7

Q ss_pred             HHHHHHHHHHHhhhcccccccccccccccCCCCCC---------------CccccCChhHHHHHHHHHHHHHHHHHHHHH
Q 016882           51 ILPFLFPALGGLLYGYDIGSTSCATISIESPTLSG---------------ISWYDLSSVEIGLITSGSLYGALIGSILAF  115 (381)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  115 (381)
                      +.+..++.++....+.++...+.+.+.+.++....               ..+++++..+.|++.+.+.+++.+++++.|
T Consensus        18 ~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g   97 (465)
T TIGR00894        18 LFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIIIQIPVG   97 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHHHcchH
Confidence            34446666666778889999988888776521110               114799999999999999999999999999


Q ss_pred             HHHHhhchHHHHHHHHHHHHHHHHHHHHh--chHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHH
Q 016882          116 NIADILGRRRELILAALLYLVGALVTALA--PDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIV  193 (381)
Q Consensus       116 ~l~d~~Grk~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  193 (381)
                      +++||+|||+++.++.+++.++.+++.++  .+++.+++.|++.|++.+...+....++.|++|+++|++++++...+..
T Consensus        98 ~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  177 (465)
T TIGR00894        98 YLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQ  177 (465)
T ss_pred             HHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999888877554  5688899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHhh-cccchhHHHHhhccccCcchhhHHHHHHHHHHHhCCCCC
Q 016882          194 LGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW-LPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIG  272 (381)
Q Consensus       194 ~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (381)
                      +|.++++++++.+.+...+||+.|++.++++++..+++++ .+|+|+..      ++.    .++|. +.+++.   ...
T Consensus       178 ~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~------~~~----~~~~~-~~i~~~---~~~  243 (465)
T TIGR00894       178 LGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIH------PCI----SKFEK-KYINSS---LQG  243 (465)
T ss_pred             HHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccC------CCC----CHHHH-HHHHhh---ccc
Confidence            9999999999999876239999999999988876655544 55665420      000    00111 111100   000


Q ss_pred             CCChhhHHHHHHhhhhccccccccchhhccccchHHHHHHHHHHHHHHhhchhHHHhcHHHHHHH-cCCCCCchhHHHHH
Q 016882          273 DSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSI  351 (381)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~  351 (381)
                                    ++++.+++..++++++++..+.    ..+..+....+++.+..|.|.++++ .|+ +..++.....
T Consensus       244 --------------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~lp~~l~~~~g~-s~~~~g~~~~  304 (465)
T TIGR00894       244 --------------QKGSTRQSLPIKAIPKSLPVWA----IWFAIFGHFWLYTILPTYLPTFISWVLRV-SGKENGLLSS  304 (465)
T ss_pred             --------------ccCCCCCCCCHHHHhcCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhCc-ChHHhHHHHH
Confidence                          0001112334677777643333    3333344444567777888888765 588 6677777777


Q ss_pred             HHHHHHHHHhHHHH
Q 016882          352 LLGLFKVGSCTLFF  365 (381)
Q Consensus       352 ~~~~~~~i~~~~~~  365 (381)
                      +..+..+++.+++-
T Consensus       305 ~~~~~~~i~~~~~g  318 (465)
T TIGR00894       305 LPYLFAWLCSIFAG  318 (465)
T ss_pred             HHHHHHHHHHHHHH
Confidence            77777777766644

>PRK03545 putative arabinose transporter; Provisional

Probab=99.93  E-value=6.1e-24  Score=199.79  Aligned_cols=242  Identities=20%  Similarity=0.261  Sum_probs=184.8

Q ss_pred             hhhcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 016882           62 LLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVT  141 (381)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~  141 (381)
                      +..........+.+|.+.++       +|.+..+.+++.+.+.+++.+++++.|++.||+|||+++..+.++..++++++
T Consensus        19 ~~~~~~~~~~~~~~~~l~~~-------~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~   91 (390)
T PRK03545         19 FIFNTTEFVPVGLLSDIAQS-------FHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLS   91 (390)
T ss_pred             HHHHhHHHHHHcchHHHHhH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHH
Confidence            33333434455567888887       89999999999999999999999999999999999999999999999999999


Q ss_pred             HHhchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhH
Q 016882          142 ALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGAST  221 (381)
Q Consensus       142 ~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~  221 (381)
                      ++++|++.++++|++.|++.+...+...+++.|++|+++|++++++...+..+|..++|++++.+.+.. |||+.|++.+
T Consensus        92 ~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~-gw~~~f~~~~  170 (390)
T PRK03545         92 ALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYL-GWRTTFLAIG  170 (390)
T ss_pred             HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHh-cHHHHHHHHH
Confidence            999999999999999999999888999999999999999999999999999999999999999998877 9999999999


Q ss_pred             HHHHHHHHHHh-hcccchhHHHHhhccccCcchhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhhccccccccchhh
Q 016882          222 PLAVIMGMGMW-WLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREV  300 (381)
Q Consensus       222 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (381)
                      +++++..+..+ +.|+.|+.                 +                                +....+.++.
T Consensus       171 ~~~~l~~~~~~~~~~~~~~~-----------------~--------------------------------~~~~~~~~~~  201 (390)
T PRK03545        171 GGALITLLLLIKLLPLLPSE-----------------H--------------------------------SGSLKSLPLL  201 (390)
T ss_pred             HHHHHHHHHHHHhCCCCCCC-----------------C--------------------------------cchHHHHHHH
Confidence            88776554433 35553210                 0                                0000123456


Q ss_pred             ccccchHHHHHHHHHHHHHHhhchhHHHhcHHHHHHH-cCCCCCchhHHHHHHHHHHHHHHhHHHH
Q 016882          301 FHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGLFKVGSCTLFF  365 (381)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~i~~~~~~  365 (381)
                      ++++..+.......+....    ......|.+.++++ .|+ +.........+.++..+++.++..
T Consensus       202 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~g~-s~~~~~~~~~~~~~~~~~g~~~~g  262 (390)
T PRK03545        202 FRRPALVSLYLLTVVVVTA----HFTAYSYIEPFVQQVAGL-SENFATLLLLLFGGAGIIGSVLFS  262 (390)
T ss_pred             HhCcHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHHHHH
Confidence            6666544433332222221    22233455555554 588 666777777777778888877644

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.93  E-value=1.2e-23  Score=197.77  Aligned_cols=234  Identities=19%  Similarity=0.266  Sum_probs=180.2

Q ss_pred             ccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhchHHH
Q 016882           70 STSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFII  149 (381)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~  149 (381)
                      ...+.+|.+.++       +|.++++.++..+++.++..+++++.|++.||+|||+.+..+.++.+++.+++.++++++.
T Consensus        38 ~~~~~l~~~~~~-------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~  110 (394)
T PRK10213         38 LPVSLLTPMAQD-------LGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSL  110 (394)
T ss_pred             HHHhhHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHH
Confidence            444456777776       8999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHH
Q 016882          150 MVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGM  229 (381)
Q Consensus       150 ~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~  229 (381)
                      ++++|++.|++.+...+....++.|++|+++|++++++...+.++|.+++|.+++.+.+.. +||+.|++.+++++++.+
T Consensus       111 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~-gw~~~f~~~~~l~~~~~l  189 (394)
T PRK10213        111 LLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELI-GWRNVFNAAAVMGVLCIF  189 (394)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999887 999999998877766544


Q ss_pred             HHh-hcccchhHHHHhhccccCcchhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhhccccccccchhhccccchHH
Q 016882          230 GMW-WLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKA  308 (381)
Q Consensus       230 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (381)
                      ... ..||+|+.                +                                 ++...+.++.++++..+.
T Consensus       190 ~~~~~~p~~~~~----------------~---------------------------------~~~~~~~~~~l~~~~~~~  220 (394)
T PRK10213        190 WIIKSLPSLPGE----------------P---------------------------------SHQKQNTFRLLQRPGVMA  220 (394)
T ss_pred             HHHHHCCCCCcc----------------c---------------------------------ccchhHHHHHhcCHHHHH
Confidence            333 34553210                0                                 000011234555544433


Q ss_pred             HHHHHHHHHHHHhhchhHH-HhcHHHHHHHcCCCCCchhHHHHHHHHHHHHHHhHHHH
Q 016882          309 LIIGAGLVLFQQITGQPSV-LYYAASILQSAGFSAASDATRVSILLGLFKVGSCTLFF  365 (381)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~  365 (381)
                      ..+...+..    .+.... .+..|.+.++.|+ +.+.........++..+++.++.-
T Consensus       221 ~~~~~~~~~----~~~~~~~~~~~p~~~~~~g~-s~~~~g~~~~~~~~~~iig~~~~~  273 (394)
T PRK10213        221 GMIAIFMSF----AGQFAFFTYIRPVYMNLAGF-GVDGLTLVLLSFGIASFVGTSLSS  273 (394)
T ss_pred             HHHHHHHHH----HHHHHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHH
Confidence            322222221    222333 3345777777898 666677777777777788776533

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.93  E-value=3.5e-24  Score=202.68  Aligned_cols=291  Identities=16%  Similarity=0.156  Sum_probs=223.8

Q ss_pred             CchhHHHHHHHHHHHHHHhhhccccccccccccc-ccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016882           44 NYSVSAAILPFLFPALGGLLYGYDIGSTSCATIS-IESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILG  122 (381)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~G  122 (381)
                      +..++..+.++..++..++....+...++.+... +.+|       +++...+.+.+.+++.++++++.++++.|.||++
T Consensus        37 ~l~~K~dl~i~~~~~~~y~~~~~d~~si~~a~l~g~~ed-------l~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~  109 (495)
T KOG2533|consen   37 KLLRKLDLFILPFLCYLYFHAYLDKSSIVNASLSGLKED-------LKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFP  109 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcchhcchhHHHcCCccc-------cchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCC
Confidence            3445555566677777788888887766654433 3343       7899999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHH
Q 016882          123 RRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGI  202 (381)
Q Consensus       123 rk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~  202 (381)
                      ..+.+....+++++..++....+|++.+++.|++.|+.+++.+|....+++.|+.+++|+..++++....++|.++|.++
T Consensus       110 ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggli  189 (495)
T KOG2533|consen  110 LSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLI  189 (495)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHH
Confidence            99999999999998888888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhc-----ccchhHHHHHhhHHHHHHHH-HHHhhcccchhHHHHhhccccCcchhhHHHHHHHHHHHhCCCCCCCCh
Q 016882          203 GSLLVD-----LVAGWRYMYGASTPLAVIMG-MGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAP  276 (381)
Q Consensus       203 ~~~l~~-----~~~~w~~~f~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (381)
                      +..+..     ...||||.|++.++++++.. +..+++|+.|....          ...++|.+-..++++.++...   
T Consensus       190 A~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~----------fl~~~ek~~~~~~~~~~~~~~---  256 (495)
T KOG2533|consen  190 AYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAW----------FLTDEEKELVVERLRESPSGG---  256 (495)
T ss_pred             HHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhcc----------ccchHHHHHHHHHHHhccCCC---
Confidence            999642     22499999999999998855 55566999886210          001122221122222111110   


Q ss_pred             hhHHHHHHhhhhccccccccchhhccccchHHHHHHHHHHHHHHhhchhHHHhcHHHHHHH-cCCCCCchhHHHHHHHHH
Q 016882          277 TEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGL  355 (381)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~  355 (381)
                                 .+++.++.++++.++++..++..++.++...    ..+.+.+|+|.++++ .|+ +..++...++...+
T Consensus       257 -----------~~~~~~~~~~~~a~~dp~vw~~~l~~~~~~l----v~~~~~~~lpl~l~~~~~~-s~~~a~~ls~~~~~  320 (495)
T KOG2533|consen  257 -----------IENKFKWKGFKEALKDPGVWPFSLCYFFLKL----VNYGFSYWLPLYLKSNGGY-SELQANLLSTPYDV  320 (495)
T ss_pred             -----------cccccCHHHHHHHHhchhHHHHHHHHHHHhh----ccccHHHHHHHHHHcCCCc-ChHHhccccchHHh
Confidence                       0112456778888888766655544443333    347788999999998 468 88899999999999


Q ss_pred             HHHHHhHHHHHHHHH
Q 016882          356 FKVGSCTLFFMSNVY  370 (381)
Q Consensus       356 ~~~i~~~~~~~~~~~  370 (381)
                      .++++.+++.+.+..
T Consensus       321 ~g~v~~i~ag~lsdr  335 (495)
T KOG2533|consen  321 GGIVGLILAGYLSDR  335 (495)
T ss_pred             hhHHHHHHHHHHHHH
Confidence            999999998766544

>TIGR00895 2A0115 benzoate transport

Probab=99.93  E-value=8.9e-24  Score=198.66  Aligned_cols=286  Identities=23%  Similarity=0.352  Sum_probs=203.8

Q ss_pred             HHHHHHHhhhcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 016882           55 LFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLY  134 (381)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~  134 (381)
                      +...+..+..+++........|.+.++       +|.+..+.+++.++..++..++.++.|+++||+|||+.+..+.++.
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~   92 (398)
T TIGR00895        20 ILSFLIMLMDGYDLAAMGFAAPAISAE-------WGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLF   92 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHhhc-------cCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHH
Confidence            344445566666666777778888777       8999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhH
Q 016882          135 LVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWR  214 (381)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~  214 (381)
                      +++.++..+.++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+.+.. +|+
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-g~~  171 (398)
T TIGR00895        93 SVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVF-GWR  171 (398)
T ss_pred             HHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcc-cce
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998887 999


Q ss_pred             HHHHhhHHHHHH-HHHHHhhcccchhHHHHhhccccCcchhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhhccccc
Q 016882          215 YMYGASTPLAVI-MGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDK  293 (381)
Q Consensus       215 ~~f~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (381)
                      +.|++.+++.++ .++...++||++++...++          .++.++..++.......+... +..+    .+.+.+..
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~  236 (398)
T TIGR00895       172 SLFYVGGIAPLLLLLLLMRFLPESIDFLVSKR----------PETVRRIVNAIAPQMQAEAQS-ALPE----QKATQGTK  236 (398)
T ss_pred             eehhhhhhHHHHHHHHHHHhCCCCChHHHhcC----------HHHHHHHHHHHHHhccccccc-cccc----cccccchh
Confidence            999998766555 4455566888876543321          122222222221111111000 0000    00000111


Q ss_pred             cccchhhccccchHHHHHHHHHHHHHHhhchhHHHhcHHHHHHHcCCCCCchhHHHHHHHHHHHHHHhHHHH
Q 016882          294 EVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKVGSCTLFF  365 (381)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~  365 (381)
                      +..++.+++++..+........ .+.....+.....|.|++.++.|+ +.........+..+..+++.+++.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~  306 (398)
T TIGR00895       237 RSVFKALFQGKTARITVLLWLL-YFMLLVGVYFLTNWLPKLMVELGF-SLSLAATGGALFNFGGVIGSIIFG  306 (398)
T ss_pred             hHHHHHHhcchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1122233433333333332222 233334456677788888888888 666777777777877777777754

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.93  E-value=1.9e-26  Score=208.46  Aligned_cols=274  Identities=19%  Similarity=0.218  Sum_probs=209.5

Q ss_pred             HHHHHHHHHHHHhhhcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Q 016882           50 AILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELIL  129 (381)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~  129 (381)
                      ....++++++.+.++..|...+....+...+.       +|++++..|++.+++.+.+++.+|+.|+++||+.||+++.+
T Consensus        31 ~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~-------fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~v  103 (493)
T KOG1330|consen   31 PTLTLVILCLVNLMNYADRYTIAGVLKEVQTY-------FNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAV  103 (493)
T ss_pred             chHHHHHHHHHHHHHHhhhhhhhhhhHHHHHh-------cCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEee
Confidence            34455777888899999999999999888887       89999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcc
Q 016882          130 AALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDL  209 (381)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  209 (381)
                      |.++|.++.+++++++.+|++.++|.+.|+|.+...++.+++++|.+|.++|++++++++.+..+|..+|...+..+.+.
T Consensus       104 G~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~  183 (493)
T KOG1330|consen  104 GIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASL  183 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             cchhHHHHHhhHHHHHHHHHHHhh-cccchhHHHHhhccccCcchhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhh
Q 016882          210 VAGWRYMYGASTPLAVIMGMGMWW-LPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSY  288 (381)
Q Consensus       210 ~~~w~~~f~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (381)
                      ...|||.|+..+++++++.++.++ .+|+++.-.              +|.       .+....              ..
T Consensus       184 ~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~--------------~~~-------~~~~~~--------------~~  228 (493)
T KOG1330|consen  184 TFWWRWAFRGSAVLGVIVGLLVFLFVREPERGAR--------------DEV-------DGENKM--------------VK  228 (493)
T ss_pred             ccceEEEEEeehHHHHHHHHHHHhhccCcccccc--------------ccc-------ccCCcC--------------CC
Confidence            756999999999999987666555 555433100              000       000000              00


Q ss_pred             ccccccccchhhccccchHHHHHHHHHHHHHHhhchhHHHhcHHHH----HHHcCCCCCchhHHHHHHHHHHHHHHhHHH
Q 016882          289 VGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASI----LQSAGFSAASDATRVSILLGLFKVGSCTLF  364 (381)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~  364 (381)
                      .......+.+.+.+++..+...+......+..    ..+.+|.|.+    .+-.|+ +..+......+....+.+|++.|
T Consensus       229 ~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~----Gs~sww~p~~~~~~~~~~~~-~~~~~~ifg~vt~~~G~lGvl~G  303 (493)
T KOG1330|consen  229 PFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVI----GSLSWWAPAFIYYSYELIGF-DHNATLIFGGVTCAGGSLGVLFG  303 (493)
T ss_pred             CccchHHHHHHHHccCceeeehHHHHHHHHhc----cccchhhhhHHHHHHHHhCC-ccccchhhhhHHHhhchhhheeh
Confidence            01111122233333343343344444444432    3344444444    334466 66777888888888888888887


Q ss_pred             HHHHHH
Q 016882          365 FMSNVY  370 (381)
Q Consensus       365 ~~~~~~  370 (381)
                      -+.+..
T Consensus       304 giisd~  309 (493)
T KOG1330|consen  304 GIISDK  309 (493)
T ss_pred             HHHHHH
Confidence            766444

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.93  E-value=3.9e-23  Score=200.04  Aligned_cols=180  Identities=17%  Similarity=0.169  Sum_probs=163.2

Q ss_pred             HHHHHHHHHHHhhhcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Q 016882           51 ILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILA  130 (381)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~  130 (381)
                      +..++.++++.++..+|.+..+.++|++.++       +|.+.++.+|+.+.+.++..++.+++|+++||+|||++++++
T Consensus         5 ~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~-------l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~   77 (495)
T PRK14995          5 WLTLVIIVLVYIPVAIDATVLHVAAPTLSMT-------LGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLG   77 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            4456778888899999999999999999988       999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhC-CcccchhHHhHHHHHHHHHHHHHHHHHHHhhcc
Q 016882          131 ALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETA-PTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDL  209 (381)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  209 (381)
                      .++..++.+++++++|++.++++|++.|+|.+...+.....+.+.+ |+++|++++++......+|..+||.+++.+.++
T Consensus        78 ~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~  157 (495)
T PRK14995         78 GTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEH  157 (495)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            9999999999999999999999999999999998888877777765 789999999999999999999999999999998


Q ss_pred             cchhHHHHHhhHHHHHHHHH-HHhhcccch
Q 016882          210 VAGWRYMYGASTPLAVIMGM-GMWWLPASP  238 (381)
Q Consensus       210 ~~~w~~~f~i~~~~~~~~~~-~~~~~~~~~  238 (381)
                      . +|||.|++...+.++.++ ..+++|+++
T Consensus       158 ~-gwr~~f~i~~~~~~~~~~l~~~~l~~~~  186 (495)
T PRK14995        158 F-YWGSVFLINVPIVLVVMGLTARYVPRQA  186 (495)
T ss_pred             C-ChHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            7 999999998887776544 444567654

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.92  E-value=3.1e-24  Score=206.43  Aligned_cols=281  Identities=17%  Similarity=0.097  Sum_probs=200.1

Q ss_pred             HHHHHHHHHHHHhhhcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Q 016882           50 AILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELIL  129 (381)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~  129 (381)
                      .+..+....++++..+.++...+...|.+.++       +|++..+.|++.+++.+++.+++++.|+++||+|||+++.+
T Consensus        27 ~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~-------~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~   99 (467)
T PRK09556         27 FMQSYLVVFIGYLTMYLIRKNFKAAQNDMIST-------YGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPF   99 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHhcChhhhhHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHH
Confidence            45566777778888888999999999999888       99999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH-----hchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHH
Q 016882          130 AALLYLVGALVTAL-----APDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGS  204 (381)
Q Consensus       130 ~~~~~~~~~~~~~~-----~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  204 (381)
                      +.++++++.++.++     +++++.++++|++.|++.+...+....+++|++|+++|++++++++.+..+|.++++.+..
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~  179 (467)
T PRK09556        100 LLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVAL  179 (467)
T ss_pred             HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHH
Confidence            88888877776665     5899999999999999999999999999999999999999999999999999999999987


Q ss_pred             Hhhccc--chhHHHHHhhHHHHHHHHHHH-hhcccchhHHHHhhccccCcchhhHHHHHHHHHHHhCCCCCCCChhhHHH
Q 016882          205 LLVDLV--AGWRYMYGASTPLAVIMGMGM-WWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDE  281 (381)
Q Consensus       205 ~l~~~~--~~w~~~f~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (381)
                      ++.+..  ++||..|.+.+++.++..+.. ++.+++|+.....          ..+|   .   .... ..      .++
T Consensus       180 ~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~----------~~~~---~---~~~~-~~------~~~  236 (467)
T PRK09556        180 WGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWG----------KAEE---I---FGEP-IS------EED  236 (467)
T ss_pred             HHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCC----------Chhh---c---ccCc-cc------hhh
Confidence            766532  369999998888877654444 4456666421000          0000   0   0000 00      000


Q ss_pred             HHHhhhhcccccccc-chhhccccchHHHHHHHHHHHHHHhhchhHHHhcHHHHHHH-cCCCCCchhHHHHHHHHHHHHH
Q 016882          282 ILTELSYVGEDKEVS-LREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGLFKVG  359 (381)
Q Consensus       282 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~i  359 (381)
                        ++.++++...... .+..++++..+..    .+..+.....+.....|.|.++++ .|+ +..++........+..++
T Consensus       237 --~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~p~yl~~~~g~-s~~~a~~~~~~~~~~~~i  309 (467)
T PRK09556        237 --KETESTDMTKWQIFVEYVLKNPVIWLL----CFANIFLYIVRIGIDNWSPVYAFQELGF-SKEDAINTFTLFEIGALV  309 (467)
T ss_pred             --hccccccCcHHHHHHHHHHcChHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHHH
Confidence              0000000000000 1124555433322    222233333345677888887755 688 667777777778888888


Q ss_pred             HhHHHHHH
Q 016882          360 SCTLFFMS  367 (381)
Q Consensus       360 ~~~~~~~~  367 (381)
                      +.+++...
T Consensus       310 g~~~~G~l  317 (467)
T PRK09556        310 GSLLWGWL  317 (467)
T ss_pred             HHHHHHHH
Confidence            88876544

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.92  E-value=6.4e-24  Score=197.20  Aligned_cols=233  Identities=17%  Similarity=0.058  Sum_probs=169.7

Q ss_pred             ccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhchHHH
Q 016882           70 STSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFII  149 (381)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~  149 (381)
                      ..++..|.+.+|       +|++..+.+++.+.+.+++.+++++.|+++||+|||+++..+......+.......++++.
T Consensus         9 ~~~~~lp~i~~~-------~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~   81 (368)
T TIGR00903         9 TFSPVLSLVAED-------IDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEW   81 (368)
T ss_pred             HHHhhHHHHHHH-------hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            445667888777       8999999999999999999999999999999999998876655554444333333379999


Q ss_pred             HHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHH-
Q 016882          150 MVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMG-  228 (381)
Q Consensus       150 ~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~-  228 (381)
                      ++++|++.|++.+. .......++|++|+++|++++++.+.+..+|.++++.+++++.+.. |||+.|++.++++++.. 
T Consensus        82 l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~-gWr~~f~~~~~l~~~~~~  159 (368)
T TIGR00903        82 LLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAG-GLQLLIIPIAAVAAAGII  159 (368)
T ss_pred             HHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-chHHHHHHHHHHHHHHHH
Confidence            99999999999986 4555666799999999999999999999999999999999999876 99999999888877654 


Q ss_pred             HHHhhcccchhHHHHhhccccCcchhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhhccccccccchhhccccchHH
Q 016882          229 MGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKA  308 (381)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (381)
                      +..+++||+|++.   +    ++                     .+ .   ++.           ..+++++++++..+.
T Consensus       160 ~~~~~lp~~p~~~---~----~~---------------------~~-~---~~~-----------~~~~~~ll~~~~~~~  196 (368)
T TIGR00903       160 LVLAALPALPFQA---A----EG---------------------FG-F---KDA-----------VKEFGALAGRKDLWI  196 (368)
T ss_pred             HHHHHcCCCCCCC---C----CC---------------------cc-h---HHH-----------HHHHHHHHcChhHHH
Confidence            4555688887531   0    00                     00 0   000           012567777754443


Q ss_pred             HHHHHHHHHHHHhhchhHHHhcHHHHHHHcCCCCCchhHHHHHHHHHHHHHH
Q 016882          309 LIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKVGS  360 (381)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~  360 (381)
                      ..+    ..+.....++.+..|.|.++++.|+ +.+ +.....+..+.+.++
T Consensus       197 ~~~----~~~~~~~~~~~~~~wlp~~L~~~g~-s~~-~~~~~~l~~~~g~~g  242 (368)
T TIGR00903       197 IGA----ILGFGVALFDNLAIWLEAALRPAGL-EDI-AGDAVALAILAGLIG  242 (368)
T ss_pred             HHH----HHHHHHHHHHHHHHHHHHHHHHCCC-ChH-HHHHHHHHHHHHHHH
Confidence            333    2333444456778899999998887 433 334444444444444

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.92  E-value=4.6e-23  Score=194.62  Aligned_cols=251  Identities=23%  Similarity=0.230  Sum_probs=204.2

Q ss_pred             cccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhc--hHHHHHHHHHHHHHHHhhHh
Q 016882           88 WYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAP--DFIIMVVGRFVFGIGIGLAM  165 (381)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~r~l~G~~~g~~~  165 (381)
                      ++++++.+.+++.+.+++|+.+++++.|++.||+|.|+++..+.++.++++++...+.  +++.+++.|+++|++.|..+
T Consensus        67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~  146 (466)
T KOG2532|consen   67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLF  146 (466)
T ss_pred             eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHH
Confidence            3799999999999999999999999999999999999999999999999999998865  45688999999999999999


Q ss_pred             HHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHhh-cccchhHHHHh
Q 016882          166 HAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW-LPASPRWLLLC  244 (381)
Q Consensus       166 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~~-~~~~~~~~~~~  244 (381)
                      |....+...|.|+++|++..++...+..+|.+++.++++.+.+...||++.|++.++++++..+++++ ..|+|......
T Consensus       147 pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~~i  226 (466)
T KOG2532|consen  147 PAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHPNI  226 (466)
T ss_pred             hhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCCCC
Confidence            99999999999999999999999999999999999999999998449999999999999997766655 56666531110


Q ss_pred             hccccCcchhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhhccc--cccccchhhccccchHHHHHHHHHHHHHHhh
Q 016882          245 AMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGE--DKEVSLREVFHGKCLKALIIGAGLVLFQQIT  322 (381)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (381)
                                .++|.+                    ...++..++..  .++.+|+++++++..+    .+.+..+....
T Consensus       227 ----------s~~El~--------------------~I~~~k~~~~~~~~~~vP~~~i~ts~~vw----ai~~~~f~~~~  272 (466)
T KOG2532|consen  227 ----------SEKELK--------------------YIEKGKSEAHVKKKPPVPYKAILTSPPVW----AIWISAFGGNW  272 (466)
T ss_pred             ----------CHHHHH--------------------HHHhcccccccCCCCCCCHHHHHcCHHHH----HHHHHHHHHHH
Confidence                      011111                    11111111111  1467899999985433    34445566666


Q ss_pred             chhHHHhcHHHHHHHc-CCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 016882          323 GQPSVLYYAASILQSA-GFSAASDATRVSILLGLFKVGSCTLFFMSNVYFFC  373 (381)
Q Consensus       323 ~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  373 (381)
                      ++..+..|.|.|+++. |+ +..+.+..+.+..+...+..+++...+.++.+
T Consensus       273 ~~~~l~~y~PtY~~~VL~f-~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~  323 (466)
T KOG2532|consen  273 GFYLLLTYLPTYLKEVLGF-DVRETGFLSALPFLAMAIVKFVAGQLSDRLTF  323 (466)
T ss_pred             HHHHHHHHhhHHHHHHhCC-ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            7889999999999986 88 88899999999999999998888877766644

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.92  E-value=3.1e-23  Score=196.13  Aligned_cols=176  Identities=16%  Similarity=0.228  Sum_probs=156.3

Q ss_pred             HHHHHHHhhhcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 016882           55 LFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLY  134 (381)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~  134 (381)
                      ....+..+...+......+.+|.+.++       +|.+..+.++..+++.+++.++++++|+++||+|||++++.+.+++
T Consensus        19 ~~~~~~~~~~~~~~~~~~p~l~~i~~~-------~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~   91 (413)
T PRK15403         19 MALILYDFAAYLTTDLIQPGIINVVRD-------FNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIF   91 (413)
T ss_pred             HHHHHHHHHHHHHHHhhccCHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHH
Confidence            444555566677788888889988877       8999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhH
Q 016882          135 LVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWR  214 (381)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~  214 (381)
                      +++.+++.++++++.++++|++.|++.+...+....++.|++|+++|++.+++......+|..++|.+++.+.+.. +||
T Consensus        92 ~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~-gw~  170 (413)
T PRK15403         92 TLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFV-HWK  170 (413)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHH
Confidence            9999999999999999999999999988777777888999999999999999999999999999999999988776 999


Q ss_pred             HHHHhhHHHHHHHHHH-Hhhcccch
Q 016882          215 YMYGASTPLAVIMGMG-MWWLPASP  238 (381)
Q Consensus       215 ~~f~i~~~~~~~~~~~-~~~~~~~~  238 (381)
                      +.|++.+++.++..+. .+++||++
T Consensus       171 ~~f~~~~~~~~i~~~~~~~~lp~~~  195 (413)
T PRK15403        171 VLFAIIAVMGLIAFVGLLLAMPETV  195 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            9999999887776554 34577764

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.92  E-value=3e-29  Score=240.34  Aligned_cols=293  Identities=34%  Similarity=0.561  Sum_probs=226.2

Q ss_pred             HHHHHhhhcccccccccccccccCC---CCCCCcc-ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 016882           57 PALGGLLYGYDIGSTSCATISIESP---TLSGISW-YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAAL  132 (381)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~  132 (381)
                      +.++.+..+++....+...+.....   .....++ .+.+..+.++..+...+|..+|++++|.++||+|||+.+.++.+
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~   84 (451)
T PF00083_consen    5 ASLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISAL   84 (451)
T ss_pred             eHHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhccccccccccccccccccccccccc
Confidence            3445577777777766655444411   1111111 11244678999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhc---hHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcc
Q 016882          133 LYLVGALVTALAP---DFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDL  209 (381)
Q Consensus       133 ~~~~~~~~~~~~~---~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  209 (381)
                      +..++.++.++++   +++.+.++|++.|++.|+..+....++.|..|+++|+...++.+.++.+|.+++..++..+...
T Consensus        85 ~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~  164 (451)
T PF00083_consen   85 LMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYY  164 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999999999   9999999999999999999999999999999999999999999999999999998887766443


Q ss_pred             c--chhHHHHHhhHHHHHHHHHHHhhcccchhHHHHhhccccCcchhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhh
Q 016882          210 V--AGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELS  287 (381)
Q Consensus       210 ~--~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (381)
                      .  .+||+.+++.++++++.++..+++||||+|+..++         +++|+++.++++++.+..+++.   +++.++.+
T Consensus       165 ~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~---------~~~~A~~~l~~~~~~~~~~~~~---~~~~~~~~  232 (451)
T PF00083_consen  165 SDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKG---------RDEEAEKVLRKLRGKEIEDEEI---EEIKAEKK  232 (451)
T ss_pred             cccccccccccccccccccccccccccccccceecccc---------cccccccccccccccccccccc---cccccccc
Confidence            3  25999999999999888888888999999998877         6788888888877664433222   22222211


Q ss_pred             hccccccccchhhccccc-hHHHHHHHHHHHHHHhhchhHHHhcHHHHHHHcCCCCCchhHHHHHHHHHHHHHHhHHHH
Q 016882          288 YVGEDKEVSLREVFHGKC-LKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKVGSCTLFF  365 (381)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~  365 (381)
                      + .++++.+++++++++. ++++.+.+.+..+.++.+++...+|.+.+++..|.++ .  ...+.+.++..+++++++.
T Consensus       233 ~-~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~  307 (451)
T PF00083_consen  233 E-SQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISN-S--FLATLILGLVNFLGTLLAI  307 (451)
T ss_pred             c-ccccceeeeecccccccccccccccccccccccccccccccccccccccccccc-c--ccccccccccccccccccc
Confidence            1 1122267888888764 5677777778888888888889999999999888733 2  5555666677777777664

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.92  E-value=1.4e-22  Score=190.64  Aligned_cols=237  Identities=17%  Similarity=0.143  Sum_probs=183.3

Q ss_pred             cccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhchHH
Q 016882           69 GSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFI  148 (381)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~  148 (381)
                      ...++..|.+.++       +|+|..+.+++.+.+.+++.+++++.|++.||+|||+++..+..+.+++.++++++++++
T Consensus        26 ~~~~~~lp~i~~~-------~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~   98 (393)
T PRK09705         26 TSVGPLLPQLRQA-------SGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSA   98 (393)
T ss_pred             hccchhHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchH
Confidence            5677889999888       999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHH
Q 016882          149 IMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMG  228 (381)
Q Consensus       149 ~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~  228 (381)
                      .++++|++.|++.+...+....++.+++| ++|+++++++..+..+|..+++.+++.+.++..+||+.+.+.++..++.+
T Consensus        99 ~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~  177 (393)
T PRK09705         99 LLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVAL  177 (393)
T ss_pred             HHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999997 78999999999999999999999999988875589998877666654433


Q ss_pred             HHHhhcc-cchhHHHHhhccccCcchhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhhccccccccchhhccccchH
Q 016882          229 MGMWWLP-ASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLK  307 (381)
Q Consensus       229 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (381)
                      +..++.. +.|+                 +              +                 +++ +...++.++++..+
T Consensus       178 ~~~~~~~~~~~~-----------------~--------------~-----------------~~~-~~~~~~~l~~~~~~  208 (393)
T PRK09705        178 FAWWWQSAREVA-----------------S--------------S-----------------HKT-TTTPVRVVFTPRAW  208 (393)
T ss_pred             HHHHHHhcCCCc-----------------c--------------c-----------------cCC-CcCCcccccCHhHH
Confidence            3332221 1110                 0              0                 000 01112333333222


Q ss_pred             HHHHHHHHHHHHHhhchhHHHhcHHHHHHHcCCCCCchhHHHHHHHHHHHHHHhHHHHHH
Q 016882          308 ALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKVGSCTLFFMS  367 (381)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~  367 (381)
                      ...   . ..+....++.....|.|.++++.|+ +..++.....+.++..+++.++....
T Consensus       209 ~l~---~-~~~~~~~~~~~~~~~lp~~l~~~g~-s~~~ag~~~~~~~i~~i~g~~~~g~l  263 (393)
T PRK09705        209 TLG---V-YFGLINGGYASLIAWLPAFYIEIGA-SAQYSGSLLALMTLGQAAGALLMPAM  263 (393)
T ss_pred             HHH---H-HHHHHHHHHHHHHHHHHHHHHHcCC-ChhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            222   2 2222233456677788888888898 77778888888889888888876533

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.92  E-value=1.4e-22  Score=195.11  Aligned_cols=256  Identities=13%  Similarity=0.079  Sum_probs=177.6

Q ss_pred             hhcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 016882           63 LYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTA  142 (381)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~  142 (381)
                      ...+......+..|.+.++       +|++..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++.++++
T Consensus        47 ~~~~~~~~~~~~~~~l~~~-------~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~  119 (476)
T PLN00028         47 TCFVSTFAAAPLLPIIRDN-------LNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMS  119 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence            3333444556677788777       899999999999999999999999999999999999999999999999999999


Q ss_pred             HhchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhc----c----cchhH
Q 016882          143 LAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVD----L----VAGWR  214 (381)
Q Consensus       143 ~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~----~----~~~w~  214 (381)
                      ++++++.++++|++.|++.+... ....+++|++|+++|++++++.+....+|..+++.+.+.+..    .    ..|||
T Consensus       120 ~~~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr  198 (476)
T PLN00028        120 LVSSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWR  198 (476)
T ss_pred             HhcCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhH
Confidence            99999999999999999887654 456688999999999999999987777777777666554432    1    13899


Q ss_pred             HHHHhhHHHHHHHHHHHhhccc-chhHHHHhhccccCcchhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhhccccc
Q 016882          215 YMYGASTPLAVIMGMGMWWLPA-SPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDK  293 (381)
Q Consensus       215 ~~f~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (381)
                      +.|++.+++.++..+..+++++ .|+.              ..++.++       +..                .++.+.
T Consensus       199 ~~f~i~g~l~l~~~l~~~~~~~~~p~~--------------~~~~~~~-------~~~----------------~~~~~~  241 (476)
T PLN00028        199 IAFFVPGLLHIIMGILVLTLGQDLPDG--------------NYRELKK-------SGT----------------MPKDSF  241 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCcCCCC--------------chhhHHh-------cCc----------------cccccH
Confidence            9999999988876655555443 3320              0000000       000                000000


Q ss_pred             cccchhhccccchHHHHHHHHHHHHHHhhchhHHHhcHHHHHHH-cCCCCCchhHHHHHHHHHHHHHHhHHHHHHH
Q 016882          294 EVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGLFKVGSCTLFFMSN  368 (381)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  368 (381)
                      ...+++.++++..+...+.   . +........+..+.|.++.+ .|+ +...+.....+.++..+++.+++...+
T Consensus       242 ~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~p~~l~~~~g~-s~~~a~~~~~~~~~~~~ig~~~~G~ls  312 (476)
T PLN00028        242 SKVLRYGVTNYRTWILALT---Y-GYSFGVELTMDNIIAEYFYDRFGL-SLETAGAIAASFGLMNLFARPAGGYLS  312 (476)
T ss_pred             HHHHHHHHcCchhHHHHHH---H-HHHHHHHHHHHhHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            1223445555433332222   1 22222223445566666554 588 777788888888888888888765443

>PRK15075 citrate-proton symporter; Provisional

Probab=99.91  E-value=1.5e-22  Score=192.98  Aligned_cols=256  Identities=17%  Similarity=0.214  Sum_probs=178.5

Q ss_pred             HHHHHHHHhhhcccccccccccccccCCCCCCCccccCChhHHHHH-HHHH-----HHHHHHHHHHHHHHHHhhchHHHH
Q 016882           54 FLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLI-TSGS-----LYGALIGSILAFNIADILGRRREL  127 (381)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~g~l~d~~Grk~~l  127 (381)
                      ....+++.++.++|...++...|.+.++       ++.++.+.+.+ .+..     .++..+++++.|+++||+|||+.+
T Consensus        17 ~~~~~~~~~~~~~d~~~~~~~~~~i~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l   89 (434)
T PRK15075         17 ILRVTSGNFLEMFDFFLFGFYATAIAKT-------FFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGL   89 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHH
Confidence            4667778899999999999999999887       78777665443 3322     233357899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhchHH--------HHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHH
Q 016882          128 ILAALLYLVGALVTALAPDFI--------IMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGG  199 (381)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~  199 (381)
                      +.+.+++.++.++++++++++        .++++|++.|++.+...+....++.|++|+++|++++++...+..+|..++
T Consensus        90 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g  169 (434)
T PRK15075         90 IVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFA  169 (434)
T ss_pred             HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHH
Confidence            999999999999999999877        468899999999999999889999999999999999999998888888888


Q ss_pred             HHHHHHhh--------cccchhHHHHHhhHHHHHHHHHHHhhcccchhHHHHhhccccCcchhhHHHHHHHHHHHhCCCC
Q 016882          200 YGIGSLLV--------DLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSI  271 (381)
Q Consensus       200 ~~~~~~l~--------~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (381)
                      +.+++.+.        +.. |||+.|++.++...+........||++++..               +.            
T Consensus       170 ~~~g~~l~~~~~~~~~~~~-gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~---------------~~------------  221 (434)
T PRK15075        170 ALLGYLLNQWLSPAQMAEW-GWRIPFLIGCLIVPFIFLIRRSLEETEEFLA---------------RK------------  221 (434)
T ss_pred             HHHHHHHHHhCCHHHHhcc-chHHHHHHHHHHHHHHHHHHHhcCCCHHHHH---------------hh------------
Confidence            88777663        344 9999999765443222221112223211100               00            


Q ss_pred             CCCChhhHHHHHHhhhhccccccccchhhccccchHHHHHHHHHHHHHHhhchhHHHhcHHHHHHH-cCCCCCchhHHHH
Q 016882          272 GDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVS  350 (381)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~  350 (381)
                                       ++.+.+..+++..++   ++.++......+.+..+++.+..|.|.++++ .|+ +..++....
T Consensus       222 -----------------~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~-~~~~~~~~~  280 (434)
T PRK15075        222 -----------------HRPSMREIFRSLAAN---WRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHL-SAADSLLVT  280 (434)
T ss_pred             -----------------hccccccHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHH
Confidence                             000000111111111   2222222222233344567788889999887 588 666677777


Q ss_pred             HHHHHHHHHHhHHHH
Q 016882          351 ILLGLFKVGSCTLFF  365 (381)
Q Consensus       351 ~~~~~~~~i~~~~~~  365 (381)
                      .+.++..+++.+++.
T Consensus       281 ~~~~~~~~~~~~~~g  295 (434)
T PRK15075        281 LCVGVSNFIWLPIGG  295 (434)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            777777777777644

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.91  E-value=3.5e-23  Score=194.14  Aligned_cols=268  Identities=17%  Similarity=0.183  Sum_probs=194.9

Q ss_pred             hhhcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 016882           62 LLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVT  141 (381)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~  141 (381)
                      +...++....+...|.+.++       +|.+..+.+++.+++.++..++.++.|+++||+|||+++.++.++.+++.+++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~-------~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~   76 (399)
T TIGR00893         4 VINYLDRANLSFAAPMLQED-------LGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQ   76 (399)
T ss_pred             hHHHHHHHhhhHhHHHHHHh-------hCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHH
Confidence            34455666777778888777       89999999999999999999999999999999999999999999999999999


Q ss_pred             HHhchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhH
Q 016882          142 ALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGAST  221 (381)
Q Consensus       142 ~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~  221 (381)
                      +++++++.++++|++.|++.+...+....++.|++|+++|++.+++.+....+|.++++.+++.+.+.. +||+.|++.+
T Consensus        77 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~~~~~~~  155 (399)
T TIGR00893        77 AFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHF-SWQWAFIIEG  155 (399)
T ss_pred             HHHcCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhC-CchHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999988887 8999999998


Q ss_pred             HHHHHHHHHHh-hcccchhHHHHhhccccCcchhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhhccccccccchhh
Q 016882          222 PLAVIMGMGMW-WLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREV  300 (381)
Q Consensus       222 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (381)
                      ++.++..+..+ +.||+|+...      . .   .+++.+...++...+.              +.+++++.++...++.
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~------~-~---~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~  211 (399)
T TIGR00893       156 VLGIIWGVLWLKFIPDPPQKAK------W-L---TEEEKYIVVGGLLAEQ--------------QGKGPSTPKKYQIKEL  211 (399)
T ss_pred             HHHHHHHHHhhheecCCCCccc------c-C---CHHHHhhcchhhcccc--------------ccccccCCCccchHHH
Confidence            88777554444 4566543100      0 0   0011000000000000              0001112223445566


Q ss_pred             ccccchHHHHHHHHHHHHHHhhchhHHHhcHHHHHHH-cCCCCCchhHHHHHHHHHHHHHHhHHHHH
Q 016882          301 FHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGLFKVGSCTLFFM  366 (381)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~i~~~~~~~  366 (381)
                      ++++..+...+    ..+........+..+.|.++++ .|. +..+......+..+..+++.+++..
T Consensus       212 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~  273 (399)
T TIGR00893       212 LKDRRVWGLAL----GQFLVNIGLGFFLTWFPTYLVQERGL-SILEAGFMASLPGIVGFIGMILGGR  273 (399)
T ss_pred             hcCHHHHHHHH----HHHHHHhHHHHHHHHHHHHHHHHhcc-cHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            66543332222    2222333345666777777765 577 6666777777777777777776543

>PRK09952 shikimate transporter; Provisional

Probab=99.91  E-value=3.8e-22  Score=190.28  Aligned_cols=181  Identities=20%  Similarity=0.252  Sum_probs=145.2

Q ss_pred             HHHHHHHHHhhhccccccccccccc-ccCCCCCCCccc-cCChhHHHHHH-----HHHHHHHHHHHHHHHHHHHhhchHH
Q 016882           53 PFLFPALGGLLYGYDIGSTSCATIS-IESPTLSGISWY-DLSSVEIGLIT-----SGSLYGALIGSILAFNIADILGRRR  125 (381)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~~~~~~~~g~l~d~~Grk~  125 (381)
                      ......++++.+++|....+...+. +.++.      + +.++. .+++.     ++.+++..+++++.|+++||+|||+
T Consensus        23 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~   95 (438)
T PRK09952         23 AALGSFAGAVVDWYDFLLYGITAALVFNREF------FPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKR   95 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHH
Confidence            4466667888899999888876654 33321      1 44444 34443     3455678899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhchHH--------HHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHH
Q 016882          126 ELILAALLYLVGALVTALAPDFI--------IMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMV  197 (381)
Q Consensus       126 ~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~  197 (381)
                      ++.++.+++++++++++++++++        .++++|++.|++.|+..+....++.|++|+++|++..+..+.+..+|.+
T Consensus        96 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~  175 (438)
T PRK09952         96 MLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLL  175 (438)
T ss_pred             HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence            99999999999999999999976        5889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcc-------cchhHHHHHhhHHHHHHHHHHHhhcccchhH
Q 016882          198 GGYGIGSLLVDL-------VAGWRYMYGASTPLAVIMGMGMWWLPASPRW  240 (381)
Q Consensus       198 ~~~~~~~~l~~~-------~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~  240 (381)
                      ++..+...+...       ..+||+.|++.+++.++........||+|++
T Consensus       176 l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~  225 (438)
T PRK09952        176 LSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEF  225 (438)
T ss_pred             HHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhH
Confidence            998877766531       2399999999888766554444457887765

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.91  E-value=1.7e-22  Score=195.37  Aligned_cols=291  Identities=18%  Similarity=0.248  Sum_probs=205.6

Q ss_pred             HHHHHHHHhhhcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 016882           54 FLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALL  133 (381)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~  133 (381)
                      +..++++.+...++....+...|.+.++       +|.+..+.+++.+.+.++..++.++.|+++||+|||+.+.++.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~-------~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   76 (485)
T TIGR00711         4 TIVLMLGTFMAVLDSTIVNVAIPTIAGD-------LGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFA   76 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHH
Confidence            3455667788888888899999999888       899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchh
Q 016882          134 YLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGW  213 (381)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w  213 (381)
                      ..++.++++++++++.++++|++.|++.+...+...+++.|++|+++|+++.+++..+..+|..+++.+++.+.++. +|
T Consensus        77 ~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-~w  155 (485)
T TIGR00711        77 FTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENY-HW  155 (485)
T ss_pred             HHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCc-Cc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999887 99


Q ss_pred             HHHHHhhHHHHHHHHHHH-hhcccchhHHHHhhccccCcchhhHHH--HHHHHHHH--hCCCCCCCChhhHHH-------
Q 016882          214 RYMYGASTPLAVIMGMGM-WWLPASPRWLLLCAMKRKGDMQDLRES--AISCLCRL--RGQSIGDSAPTEVDE-------  281 (381)
Q Consensus       214 ~~~f~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~-------  281 (381)
                      |+.|++.+++.++..++. ++.|++++.     ++++.+.....-.  ....+...  .+++.+.........       
T Consensus       156 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (485)
T TIGR00711       156 RWIFLINVPIGIIVVVVAFFILPRDKPA-----ASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLV  230 (485)
T ss_pred             eehhhhhhHHHHHHHHHHHHHcCCcccc-----ccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHH
Confidence            999999888877655444 345654320     0000000000000  00001110  111111111111100       


Q ss_pred             -----HHHhhhhccccccccchhhccccchHHHHHHHHHHHHHHhhchhHHHhcHHHHHHH-cCCCCCchhHHHHHHHHH
Q 016882          282 -----ILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGL  355 (381)
Q Consensus       282 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~  355 (381)
                           ...+.   .++++....++++++..+...+..++..    ..+....++.|.++++ .|+ +..++.......++
T Consensus       231 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~p~~~~~~~g~-s~~~~g~~~~~~~~  302 (485)
T TIGR00711       231 AIIAFVVWEL---TDDNPLVDLRLFKYRNFTIGCVYMSLLG----LGLYGSFYLLPLYLQQVLGY-TALQAGLHILPVGL  302 (485)
T ss_pred             HHHHHHHHHH---cCCCCccCHHHHcCCChHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHH
Confidence                 00111   1111222235666665544433333222    2234556778888776 488 77777778777888


Q ss_pred             HHHHHhHHHH
Q 016882          356 FKVGSCTLFF  365 (381)
Q Consensus       356 ~~~i~~~~~~  365 (381)
                      ..+++.++..
T Consensus       303 ~~~~~~~~~g  312 (485)
T TIGR00711       303 APMLSSPIAG  312 (485)
T ss_pred             HHHHHHHHHH
Confidence            7877777644

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.91  E-value=1.5e-22  Score=193.89  Aligned_cols=177  Identities=15%  Similarity=0.056  Sum_probs=143.0

Q ss_pred             HHHHHHHhhhcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 016882           55 LFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLY  134 (381)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~  134 (381)
                      ....+.....+.+....+...|.+.+        .|++..+.+++.+.+.++++++++++|+++||+|||++++++.++.
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~p~l~~--------~g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~  103 (452)
T PRK11273         32 LGIFFGYAAYYLVRKNFALAMPYLVE--------QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA  103 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHH--------cCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHH
Confidence            44444555555565556667777665        3889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhc----hHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHH-HHHHHHHhhcc
Q 016882          135 LVGALVTALAP----DFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVG-GYGIGSLLVDL  209 (381)
Q Consensus       135 ~~~~~~~~~~~----~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~l~~~  209 (381)
                      +++.+++++.+    +++.++++|++.|++.+...+.....+.|++|+++|++++++++.+..+|..+ ++.++..+...
T Consensus       104 ~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~  183 (452)
T PRK11273        104 AAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWF  183 (452)
T ss_pred             HHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence            99988887753    78889999999999999888888888999999999999999999999998754 55444333333


Q ss_pred             cchhHHHHHhhHHHHHHH-HHHHhhcccchhH
Q 016882          210 VAGWRYMYGASTPLAVIM-GMGMWWLPASPRW  240 (381)
Q Consensus       210 ~~~w~~~f~i~~~~~~~~-~~~~~~~~~~~~~  240 (381)
                      . +||+.|++.+++.++. ++..+++||+|+.
T Consensus       184 ~-gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~  214 (452)
T PRK11273        184 N-DWHAALYMPAFAAILVALFAFAMMRDTPQS  214 (452)
T ss_pred             c-cHHHHHHHHHHHHHHHHHHHHHHccCCHhh
Confidence            3 9999999988887764 4555667887753

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.90  E-value=4.8e-22  Score=186.37  Aligned_cols=174  Identities=15%  Similarity=0.238  Sum_probs=154.6

Q ss_pred             HHHHHHhhhcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 016882           56 FPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYL  135 (381)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~  135 (381)
                      ...+..+..++......+.+|.+.++       +|.+..+.+++.+.+.++..+++++.|+++||+|||+++.++.++.+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   79 (382)
T PRK10091          7 SLALGTFGLGMAEFGIMGVLTELAHD-------VGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCV   79 (382)
T ss_pred             HHHHHHHHHHhhHHHHHhChHHHHHH-------cCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHH
Confidence            34445566667777777788888887       89999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHH
Q 016882          136 VGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRY  215 (381)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~  215 (381)
                      ++.++++++++++.+++.|++.|++.+...+....++.|++|+++|++++++...+..+|..+++++++.+.+.. +||+
T Consensus        80 ~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-gwr~  158 (382)
T PRK10091         80 IGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEF-SWRY  158 (382)
T ss_pred             HHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhc-cHHH
Confidence            999999999999999999999999999888888999999999999999999999999999999999999998876 9999


Q ss_pred             HHHhhHHHHHHHHH-HHhhcccc
Q 016882          216 MYGASTPLAVIMGM-GMWWLPAS  237 (381)
Q Consensus       216 ~f~i~~~~~~~~~~-~~~~~~~~  237 (381)
                      .|++.+++.++..+ ..++.||.
T Consensus       159 ~f~~~~~~~~~~~~~~~~~lp~~  181 (382)
T PRK10091        159 TFLLIAVFNIAVLASIYFWVPDI  181 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCC
Confidence            99999888776544 33446664

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.90  E-value=2.6e-23  Score=194.13  Aligned_cols=268  Identities=18%  Similarity=0.124  Sum_probs=192.8

Q ss_pred             HHhhhcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 016882           60 GGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGAL  139 (381)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~  139 (381)
                      +++...++....+...|.+.++       +|.+..+.+++.+++.++..+++++.|+++||+|||+.+.++.++.+++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~-------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~   75 (379)
T TIGR00881         3 GYAAYYLVRKNFALAMPYLVEE-------IGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNL   75 (379)
T ss_pred             hhhHHHHhHHhhhhhhHHHHHH-------hCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHH
Confidence            3456667777888888888877       899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHH-HHHHHhhcccchhHHHHH
Q 016882          140 VTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGY-GIGSLLVDLVAGWRYMYG  218 (381)
Q Consensus       140 ~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~-~~~~~l~~~~~~w~~~f~  218 (381)
                      +++++++++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++ .++..+.+.. +||+.|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~  154 (379)
T TIGR00881        76 FFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELY-SWHWVFI  154 (379)
T ss_pred             HHHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcC-CchhHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999 4666666665 9999999


Q ss_pred             hhHHHHHHHH-HHHhhcccchhHHHHhhccccCcchhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhhccccccccc
Q 016882          219 ASTPLAVIMG-MGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSL  297 (381)
Q Consensus       219 i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (381)
                      +.+++.++.. +..++.||+|+....+.   +++.  ..+            +.++  .    +  ++.+++.+.++...
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~------------~~~~--~----~--~~~~~~~~~~~~~~  209 (379)
T TIGR00881       155 VPGIIAIIVSLICFLLLRDSPQSCGLPP---AEEM--PNE------------EPDG--D----A--EKKEEELTKKQIFL  209 (379)
T ss_pred             HHHHHHHHHHHHHheeeCCCccccccCc---cccC--ccc------------cccc--c----c--ccccccccchHHHH
Confidence            8888776644 44445666654210000   0000  000            0000  0    0  00000011112234


Q ss_pred             hhhccccchHHHHHHHHHHHHHHhhchhHHHhcHHHHHHH-cCCCCCchhHHHHHHHHHHHHHHhHHHH
Q 016882          298 REVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGLFKVGSCTLFF  365 (381)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~i~~~~~~  365 (381)
                      +++++++..+...+...+.    ......+..|.|.++++ .|+ +..++.....+..+..+++.++..
T Consensus       210 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~g  273 (379)
T TIGR00881       210 QYVLLNKVLWYISLGYVFV----YVVRTGILDWSPLYLTQEKGF-SKEKASWAFTLYELGGLVGTLLAG  273 (379)
T ss_pred             HHHHhcchHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHcchhHHHHH
Confidence            5556665444333332222    22234556677777654 588 667777777788888887777654

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.90  E-value=1.7e-22  Score=197.02  Aligned_cols=218  Identities=22%  Similarity=0.302  Sum_probs=175.4

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA  168 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~  168 (381)
                      ++.+.....+..+++.+|..+|++++|.++||+|||++++++.++..++.++.++++|++.+++.|++.|++.++.....
T Consensus       113 ~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~  192 (521)
T KOG0255|consen  113 VCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVG  192 (521)
T ss_pred             eeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHh
Confidence            67788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHhhcccchhHHHHhhccc
Q 016882          169 PMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKR  248 (381)
Q Consensus       169 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (381)
                      ..++.|++++++|+.+..+ ......++.+++.+++++.+   +||+.+++..+++++.++..++.||+|+|+..++   
T Consensus       193 ~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~---~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g---  265 (521)
T KOG0255|consen  193 FGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR---DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKG---  265 (521)
T ss_pred             HhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcC---
Confidence            9999999999999999999 77777777777777777765   8999999999999988777677779999999887   


Q ss_pred             cCcchhhHHHHHHHHHHHhCCCCCCCChhh-HHH--HHHhhhhccccccccchhhccccchHHHHHHHHHHHHH
Q 016882          249 KGDMQDLRESAISCLCRLRGQSIGDSAPTE-VDE--ILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQ  319 (381)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (381)
                            +.+|+++.++++.+.+..+....+ .+.  ..+.......+++..+.++++.+.+++..+...+.++.
T Consensus       266 ------~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~  333 (521)
T KOG0255|consen  266 ------RIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFV  333 (521)
T ss_pred             ------chHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHH
Confidence                  668888888887654422211111 111  11111122223446688899887555555545554443

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.90  E-value=4.2e-22  Score=186.74  Aligned_cols=247  Identities=15%  Similarity=0.131  Sum_probs=187.8

Q ss_pred             hhhcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 016882           62 LLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVT  141 (381)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~  141 (381)
                      +..........+..|.+.++       +|.+..+.+++.+++.++..+++++.|++.||+|||+.+..+.++.+++.+++
T Consensus        15 ~~~~~~~~~~~~~~p~~~~~-------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~   87 (385)
T TIGR00710        15 ILGPLGIDMYLPAFPEIAAD-------LSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGL   87 (385)
T ss_pred             HHHHHHHHHhcccHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHH
Confidence            33445556666778888777       89999999999999999999999999999999999999999999999999999


Q ss_pred             HHhchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhH
Q 016882          142 ALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGAST  221 (381)
Q Consensus       142 ~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~  221 (381)
                      .++++++.++++|++.|++.+...+...+++.|++|+++|++..++.+....+|..+++.+++.+.+.. +||+.|++.+
T Consensus        88 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-~~~~~~~~~~  166 (385)
T TIGR00710        88 ALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWL-SWHAIFAFLS  166 (385)
T ss_pred             HHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999998876 9999999988


Q ss_pred             HHHHHHHHHH-hhcccchhHHHHhhccccCcchhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhhccccccccchhh
Q 016882          222 PLAVIMGMGM-WWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREV  300 (381)
Q Consensus       222 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (381)
                      ++.++..+.. ++.||+++..         ++                   .     +.           ++....+++.
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~---------~~-------------------~-----~~-----------~~~~~~~~~~  202 (385)
T TIGR00710       167 LAGILLSALIFFILPETLPYE---------AR-------------------I-----QI-----------STYFETFLLL  202 (385)
T ss_pred             HHHHHHHHHHHHhCCCCCCCc---------cc-------------------C-----CH-----------HHHHHHHHHH
Confidence            8877655444 3456543210         00                   0     00           0001123455


Q ss_pred             ccccchHHHHHHHHHHHHHHhhchhHHHhcHHHHHH-HcCCCCCchhHHHHHHHHHHHHHHhHHHH
Q 016882          301 FHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQ-SAGFSAASDATRVSILLGLFKVGSCTLFF  365 (381)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~i~~~~~~  365 (381)
                      ++++..+...+...+..    ..+.....+.|.+++ +.|+ +..+.........+..+++.++..
T Consensus       203 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~-~~~~~g~~~~~~~~~~~~~~~~~g  263 (385)
T TIGR00710       203 LKSKMFWGYALIYGASF----GGFFAFFSGAPFVYIDIMGV-SPSVFGLLFALNIIAMIFGGFLNG  263 (385)
T ss_pred             HcCchhHHHHHHHHHHH----HHHHHHHHcChHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55554444333222221    223445556676665 5688 666677777777777777776644

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK03699 putative transporter; Provisional

Probab=99.90  E-value=2.3e-21  Score=182.56  Aligned_cols=170  Identities=17%  Similarity=0.196  Sum_probs=150.6

Q ss_pred             HHHHHHhhhcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 016882           56 FPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYL  135 (381)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~  135 (381)
                      ...++.+..+.+....+..+|.+.++       +|+|.++.+++.+.+.+++.+++++.|++.||+|||+++..+.++.+
T Consensus        11 ~~~~~~~~~~~~~~~~g~~~~~i~~~-------~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~   83 (394)
T PRK03699         11 ISFLSYALTGALVIVTGMVMGPIAEY-------FNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMI   83 (394)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            34455667777777888888998887       89999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHH
Q 016882          136 VGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRY  215 (381)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~  215 (381)
                      ++.++++++++++.++++|++.|++.+...+....++.|++|+++|+..+++.+....+|..++|.+.+.+.....+||+
T Consensus        84 i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~  163 (394)
T PRK03699         84 LAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYW  163 (394)
T ss_pred             HHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHH
Confidence            99999999999999999999999999988888899999999999999999999999999999999998887754349999


Q ss_pred             HHHhhHHHHHHHHHHHh
Q 016882          216 MYGASTPLAVIMGMGMW  232 (381)
Q Consensus       216 ~f~i~~~~~~~~~~~~~  232 (381)
                      .|++.+++.++..++.+
T Consensus       164 ~f~~~~~~~~~~~~~~~  180 (394)
T PRK03699        164 VYACIGLVYVAIFILTL  180 (394)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99988887766554443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.90  E-value=4e-22  Score=185.93  Aligned_cols=242  Identities=15%  Similarity=0.074  Sum_probs=179.0

Q ss_pred             ccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhchH
Q 016882           68 IGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDF  147 (381)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~  147 (381)
                      ....++..|.+.++       +|++..+.+++.+++.++..+++++.|+++||+|||+++.++.++.+++.+++++++++
T Consensus        19 ~~~~~~~~~~~~~~-------~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~   91 (377)
T TIGR00890        19 VYTWTLLAPPLGRY-------FGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSL   91 (377)
T ss_pred             HhhhhhHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHH
Confidence            33556678888887       89999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHH
Q 016882          148 IIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIM  227 (381)
Q Consensus       148 ~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~  227 (381)
                      +.++++|++.|++.+...+.....+.+++| ++|+++.++...+..+|..+++++.+.+.+.. +||+.|++.+++.++.
T Consensus        92 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~f~~~~~~~~~~  169 (377)
T TIGR00890        92 AALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLE-GVPAAFIYMGIIFLLV  169 (377)
T ss_pred             HHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcc-cHHHHHHHHHHHHHHH
Confidence            999999999999999888888888999997 67999999999999999988777777777765 9999999999888776


Q ss_pred             HHHHh-hcccchhHHHHhhccccCcchhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhhccccccccchhhccccch
Q 016882          228 GMGMW-WLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCL  306 (381)
Q Consensus       228 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (381)
                      .+..+ +.+++|+..   .   +                   ++.+                 .+.++.+.++.++++..
T Consensus       170 ~~~~~~~~~~~~~~~---~---~-------------------~~~~-----------------~~~~~~~~~~~~~~~~~  207 (377)
T TIGR00890       170 IVLGAFLIGYPPGQL---I---K-------------------TNIE-----------------VSVKDYTVWEMLRTPQF  207 (377)
T ss_pred             HHHHHHheecCchhc---c---c-------------------cCcc-----------------cchhhhhHHHHHcCccH
Confidence            55444 454433210   0   0                   0000                 00001123455665544


Q ss_pred             HHHHHHHHHHHHHHhhchhHHHhcHHHHHHHcCCCCCchhHHHHHHHHHHHHHHhHHHH
Q 016882          307 KALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKVGSCTLFF  365 (381)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~  365 (381)
                      +...+...+..+   . ......+.+.+.++.|. +..+......+.++..+++.++..
T Consensus       208 ~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g  261 (377)
T TIGR00890       208 WVLYLSFFLNAV---S-GLLLIGLYKPYGQSLGL-SDGFLVLAVSISSIFNGGGRPFLG  261 (377)
T ss_pred             HHHHHHHHHHhH---H-HHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence            443332222221   1 22333444556677787 556667777777777777777644

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.90  E-value=4.3e-22  Score=190.03  Aligned_cols=277  Identities=17%  Similarity=0.081  Sum_probs=190.5

Q ss_pred             HHHHHHHHHHhhhcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 016882           52 LPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAA  131 (381)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~  131 (381)
                      ..+....+.+...+..........|.+.+        +|++..+.+++.+++.++..+++++.|+++||+|||+.+.++.
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--------~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~   98 (438)
T TIGR00712        27 QVFLGIFFGYAAYYLVRKNFALAMPYLVE--------QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGL   98 (438)
T ss_pred             HHHHHHHHHHHHHHHHhccHHhhhHHHHH--------cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHH
Confidence            33344455556666666666666776664        5899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHh----chHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhh
Q 016882          132 LLYLVGALVTALA----PDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLV  207 (381)
Q Consensus       132 ~~~~~~~~~~~~~----~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  207 (381)
                      ++.+++.++++..    ++++.+.+.|++.|++.|...+.....+.|++|+++|++++++.+.+..+|..+++.+.+...
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~  178 (438)
T TIGR00712        99 ILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGM  178 (438)
T ss_pred             HHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHH
Confidence            9999888877664    467788899999999999888888999999999999999999999999999999998877655


Q ss_pred             cccchhHHHHHhhHHHHHHHH-HHHhhcccchhHHHHhhccccCcchhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhh
Q 016882          208 DLVAGWRYMYGASTPLAVIMG-MGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTEL  286 (381)
Q Consensus       208 ~~~~~w~~~f~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (381)
                      ....+||+.|++.++++++.. +..+++||+|+....+.   .       ++.       +.+...+. .   ++    .
T Consensus       179 ~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---~-------~~~-------~~~~~~~~-~---~~----~  233 (438)
T TIGR00712       179 AWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPP---I-------EEY-------RNDYPDDY-N---EK----A  233 (438)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCC---c-------hhc-------cccccccc-c---cc----c
Confidence            433499999999988877754 45556788765310000   0       000       00000000 0   00    0


Q ss_pred             hhccccccccchhhccccchHHHHHHHHHHHHHHhhchhHHHhcHHHHHHHc-CCCCCchhHHHHHHHHHHHHHHhHHHH
Q 016882          287 SYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSA-GFSAASDATRVSILLGLFKVGSCTLFF  365 (381)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~~~~~  365 (381)
                      +.+.+.++.-.+.+++++..+...+...+.    ....+.+..|.|.++++. |+ +...+.....+..+.++++.+++.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~p~~l~~~~g~-s~~~~~~~~~~~~~~~~ig~~~~g  308 (438)
T TIGR00712       234 EQELTAKEIFMQYVLPNKLLWYIAIANVFV----YLLRYGVLDWSPTYLKEVKHF-ALDKSSWAYFLYEYAGIPGTLLCG  308 (438)
T ss_pred             ccccchHHHHHHHHccCchHHHHHHHHHHH----HHHHHHHHHhHHHHHHHccCC-ChhhHHHHHHHHHHHHHHHHHHHH
Confidence            000000000112345555444433322222    223355667888888764 87 666777777788888888777755


Q ss_pred             H
Q 016882          366 M  366 (381)
Q Consensus       366 ~  366 (381)
                      .
T Consensus       309 ~  309 (438)
T TIGR00712       309 W  309 (438)
T ss_pred             H
Confidence            3

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.89  E-value=4.1e-21  Score=186.36  Aligned_cols=181  Identities=23%  Similarity=0.391  Sum_probs=159.8

Q ss_pred             HHHHHHHHHHhhhcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 016882           52 LPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAA  131 (381)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~  131 (381)
                      ..+..+.++.+..+++.....+..|.+.++       +|++..+.+++.+.+.++..+++++.|+++||+|||+.++++.
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-------~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~   92 (496)
T PRK03893         20 KAFSAAWLGYLLDGFDFVLITLVLTEVQGE-------FGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISI   92 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence            344556667777888888888888888877       8999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccc
Q 016882          132 LLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVA  211 (381)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  211 (381)
                      ++.+++.+++++.++++.++++|++.|++.+...+....++.|++|+++|++++++...+..+|..+++.+.+.+.+.. 
T Consensus        93 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-  171 (496)
T PRK03893         93 VLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVW-  171 (496)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999998877 


Q ss_pred             hhHHHHHhhHHHHHHHHHHHhhcccchhH
Q 016882          212 GWRYMYGASTPLAVIMGMGMWWLPASPRW  240 (381)
Q Consensus       212 ~w~~~f~i~~~~~~~~~~~~~~~~~~~~~  240 (381)
                      +||+.|++.++..++.++.....||++++
T Consensus       172 ~w~~~f~~~~~~~~~~~~~~~~~p~~~~~  200 (496)
T PRK03893        172 GWRALFFIGILPIIFALWLRKNLPEAEDW  200 (496)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhCCCchhh
Confidence            99999988655544444444456776554

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.89  E-value=1.2e-21  Score=181.98  Aligned_cols=254  Identities=17%  Similarity=0.119  Sum_probs=183.3

Q ss_pred             hhhcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 016882           62 LLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVT  141 (381)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~  141 (381)
                      +...+........+|.+..+       ++.+..+.+++.+++.++..+++++.|+++||+|||+++..+.++..++.++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~-------~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~   81 (365)
T TIGR00900         9 LISLIGTAITQVALPLYVLA-------GTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVL   81 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-------hhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHH
Confidence            33344444555556666665       68899999999999999999999999999999999999999999988888888


Q ss_pred             HHhc-----hHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHH
Q 016882          142 ALAP-----DFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYM  216 (381)
Q Consensus       142 ~~~~-----~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~  216 (381)
                      .+..     +++.++++|++.|++.+...+...+++.|++|+++|++.+++.+.+..+|..+++.+++.+.+.. +||+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-g~~~~  160 (365)
T TIGR00900        82 PFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATL-GIKWA  160 (365)
T ss_pred             HHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh-hHHHH
Confidence            8877     99999999999999999999999999999999999999999999999999999999999998876 99999


Q ss_pred             HHhhHHHHHHHHHHHhhcccchhHHHHhhccccCcchhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhhcccccccc
Q 016882          217 YGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVS  296 (381)
Q Consensus       217 f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (381)
                      |++.++..++..+..++.+.++.        ++.+.    ++                .++   +..       ++....
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~----~~----------------~~~---~~~-------~~~~~~  202 (365)
T TIGR00900       161 IWVDAVGFAISALLIVSVRIPEL--------AASEI----QA----------------LSN---AVL-------RDTREG  202 (365)
T ss_pred             HHHHHHHHHHHHHHHHhcccccC--------CCccc----cc----------------cch---hHH-------HHHHhH
Confidence            99888776665544444322110        00000    00                000   000       000123


Q ss_pred             chhhccccchHHHHHHHHHHHHHHhhchhHHHhcHHHHHHH-cCCCCCchhHHHHHHHHHHHHHHhHHHH
Q 016882          297 LREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGLFKVGSCTLFF  365 (381)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~i~~~~~~  365 (381)
                      ++++++++..+...+...+..+.   .......+.|++.++ .|. +..+........++..+++.++..
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  268 (365)
T TIGR00900       203 IKFVLKNPLLRTLLLLALLFNLV---FAPAIVALFPYVQSKYLGR-GSTHYGWVLAAFGLGALLGALLLG  268 (365)
T ss_pred             HHHHHcCcHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHhCC-chHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566666554443333322221   112223677888776 577 666677777777777777777644

>PRK11043 putative transporter; Provisional

Probab=99.89  E-value=2.9e-21  Score=182.36  Aligned_cols=164  Identities=18%  Similarity=0.219  Sum_probs=145.9

Q ss_pred             ccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhc
Q 016882           66 YDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAP  145 (381)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~  145 (381)
                      +......+..|.+.++       +|.+..+.+++.+++.++..++++++|+++||+|||+.+..+.++..++.+++.+++
T Consensus        20 ~~~~~~~p~~~~i~~~-------~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~   92 (401)
T PRK11043         20 LATDMYLPAFKAIQAD-------LQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVE   92 (401)
T ss_pred             HHHHHHHhhHHHHHHH-------HCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhc
Confidence            3445556667777776       899999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHH
Q 016882          146 DFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAV  225 (381)
Q Consensus       146 ~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~  225 (381)
                      +++.+++.|++.|++.+...+....++.|++|+++++...+.......+|..++|.+++.+.+.. +||+.|++.+++.+
T Consensus        93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~-g~~~~~~~~~~~~~  171 (401)
T PRK11043         93 SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHF-GWQAIFATLFAITL  171 (401)
T ss_pred             CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHH
Confidence            99999999999999988888888889999999999999999999899999999999999999887 99999999988887


Q ss_pred             HHHHHHhhcccc
Q 016882          226 IMGMGMWWLPAS  237 (381)
Q Consensus       226 ~~~~~~~~~~~~  237 (381)
                      +..+..++++++
T Consensus       172 ~~~~~~~~~~~~  183 (401)
T PRK11043        172 LLILPTLRLKPS  183 (401)
T ss_pred             HHHHHHHHcCCC
Confidence            766655555554

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.89  E-value=4.9e-22  Score=183.79  Aligned_cols=171  Identities=31%  Similarity=0.515  Sum_probs=147.4

Q ss_pred             HHhhhcccccccccccc-cccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 016882           60 GGLLYGYDIGSTSCATI-SIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGA  138 (381)
Q Consensus        60 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~  138 (381)
                      +.+...+......+..| .+.++       +|.+..+.+++.+++.++..+++++.|+++||+|||+++.++.++.+++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~   76 (352)
T PF07690_consen    4 AFFLSGFGFSIISPALPLYLAEE-------LGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGS   76 (352)
T ss_dssp             HHHHHHHHHHHHHHHHH-HHHCC-------STTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHc-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHH
Confidence            33455555566667777 66666       89999999999999999999999999999999999999999999999996


Q ss_pred             HHHHHhchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHH
Q 016882          139 LVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYG  218 (381)
Q Consensus       139 ~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~  218 (381)
                      ++..++++.+.++++|++.|++.+...+....++.|++|+++|++.+++.+....+|..+++.+++.+.+.. +||+.|+
T Consensus        77 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-~~~~~~~  155 (352)
T PF07690_consen   77 LLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYF-GWRWAFL  155 (352)
T ss_dssp             HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHC-HHCCHHH
T ss_pred             HHhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcc-ccccccc
Confidence            666666888899999999999999999999999999999999999999999999999999999999999776 9999999


Q ss_pred             hhHHHHHHHHHH-Hhhcccch
Q 016882          219 ASTPLAVIMGMG-MWWLPASP  238 (381)
Q Consensus       219 i~~~~~~~~~~~-~~~~~~~~  238 (381)
                      +.+++.++..++ .+++++++
T Consensus       156 ~~~~~~~~~~il~~~~~~~~~  176 (352)
T PF07690_consen  156 ISAILSLIAAILFILFLPEPP  176 (352)
T ss_dssp             HHHHHHHHHHHHHHCCC---S
T ss_pred             cccchhhhhhhhHhhhhhhcc
Confidence            999998887664 34455443

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.89  E-value=3.1e-21  Score=182.39  Aligned_cols=183  Identities=18%  Similarity=0.212  Sum_probs=160.6

Q ss_pred             HHHHHHHHHHHHHHhhhcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHH
Q 016882           48 SAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRREL  127 (381)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l  127 (381)
                      ++.++..+.+.+..+...+....+.+..+.+.++       +|.+..+.++..+.+.++..+++++.|+++||+|||+++
T Consensus         9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l   81 (406)
T PRK15402          9 RQALLFPLCLVLFEFATYIANDMIQPGMLAVVED-------FNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVM   81 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHH
Confidence            4455556777777777777888888888888777       899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhh
Q 016882          128 ILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLV  207 (381)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  207 (381)
                      .++..+..++.+++.++++++.+++.|++.|++.+...+....++.|++|+++|++..++......+|..++|.+++.+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~  161 (406)
T PRK15402         82 LAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALI  161 (406)
T ss_pred             HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999888888999999999999999999998888899999999999998


Q ss_pred             cccchhHHHHHhhHHHHHHHHHHH-hhcccch
Q 016882          208 DLVAGWRYMYGASTPLAVIMGMGM-WWLPASP  238 (381)
Q Consensus       208 ~~~~~w~~~f~i~~~~~~~~~~~~-~~~~~~~  238 (381)
                      +.. +||+.|++.+++.++..+.. +..||++
T Consensus       162 ~~~-~w~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (406)
T PRK15402        162 HVL-PWRGMFVLFAALAALSFFGLWRAMPETA  192 (406)
T ss_pred             Hcc-CccHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            876 99999999888877755543 3456653

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.89  E-value=1.1e-20  Score=177.57  Aligned_cols=161  Identities=16%  Similarity=0.180  Sum_probs=132.8

Q ss_pred             ccccccccccccccC-CCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHh
Q 016882           66 YDIGSTSCATISIES-PTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALA  144 (381)
Q Consensus        66 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~  144 (381)
                      ..-...++..+.+.+ +       +|+|.+|.+++.+++.+++.++.++.|++.||+|+|+++.++.++..+.++..+++
T Consensus        48 ~~w~~~~~l~~~~~~~~-------~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a  120 (462)
T PRK15034         48 CVWMLFSAVTVNLNKIG-------FNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIA  120 (462)
T ss_pred             HHHHHHHHHHHHhhhhh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH
Confidence            344455555666654 4       89999999999999999999999999999999999999999999999999999887


Q ss_pred             -----chHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhh-----cc-----
Q 016882          145 -----PDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLV-----DL-----  209 (381)
Q Consensus       145 -----~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~-----~~-----  209 (381)
                           ++++.+++.|++.|++ |..++.....+++++|+++||+++|+.....++|..+++++...+.     ..     
T Consensus       121 ~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~  199 (462)
T PRK15034        121 VQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNG  199 (462)
T ss_pred             HcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccc
Confidence                 8999999999999998 6688999999999999999999999997777777766666554433     11     


Q ss_pred             -------cchhHHHHHhhHHHHHHHHHHHhhc
Q 016882          210 -------VAGWRYMYGASTPLAVIMGMGMWWL  234 (381)
Q Consensus       210 -------~~~w~~~f~i~~~~~~~~~~~~~~~  234 (381)
                             ..+||.++++..++.++..++.++.
T Consensus       200 ~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~  231 (462)
T PRK15034        200 VPQADGSVMSLANAAWIWVPLLAIATIAAWSG  231 (462)
T ss_pred             ccccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                   1258888888888877766555543

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.89  E-value=3.4e-21  Score=168.99  Aligned_cols=194  Identities=22%  Similarity=0.323  Sum_probs=169.5

Q ss_pred             HHHHHHHhhhcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 016882           55 LFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLY  134 (381)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~  134 (381)
                      .....+.....+.....+...|.....       .|++..+..++....+.+..+++..+|.++|++|||+.+.+.....
T Consensus        81 ~~ag~gwmad~m~~m~~s~i~~~l~~~-------w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t  153 (528)
T KOG0253|consen   81 FVAGMGWMADAMEMMLLSLILPALDEV-------WGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVT  153 (528)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHhh-------hchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHH
Confidence            444455555555555555555655554       5899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhH
Q 016882          135 LVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWR  214 (381)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~  214 (381)
                      ++...+...++|+..+++.|.+.|+|.|+ .|...++-.|..|..+|...+-.. ..+.+|.++...+...+.... |||
T Consensus       154 ~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~-gwr  230 (528)
T KOG0253|consen  154 GVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNF-GWR  230 (528)
T ss_pred             HHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhh-hHH
Confidence            99999999999999999999999999998 788888889999999999888777 999999999999999999888 999


Q ss_pred             HHHHhhHHHHHHHHHHHhhcccchhHHHHhhccccCcchhhHHHHHHHHHHHh
Q 016882          215 YMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLR  267 (381)
Q Consensus       215 ~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (381)
                      |......++..+.+..++++||+||++..++         ++++|.+.++++.
T Consensus       231 ~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G---------~~~kAletL~kiA  274 (528)
T KOG0253|consen  231 YLLFTSSTPLMFAARFLVWVYESPRFYLAKG---------DDYKALETLHKIA  274 (528)
T ss_pred             HHHHHHHhHHHHHHHHHhhcccCcchhhhcC---------ChHHHHHHHHHHH
Confidence            9999888888888899999999999999988         7788888888874

>PRK10133 L-fucose transporter; Provisional

Probab=99.88  E-value=1.3e-20  Score=179.29  Aligned_cols=146  Identities=21%  Similarity=0.291  Sum_probs=131.6

Q ss_pred             HHHHHHHhhhcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 016882           55 LFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLY  134 (381)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~  134 (381)
                      ....+..+..++.........|.+.++       +|++..+.+++.+.+.+++.+++++.|++.||+|||+++..+.+++
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~p~i~~~-------~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~  101 (438)
T PRK10133         29 ALLCSLFFLWAVANNLNDILLPQFQQA-------FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY  101 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            444555677788888888899999777       8999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH---HHhchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhh
Q 016882          135 LVGALVT---ALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLV  207 (381)
Q Consensus       135 ~~~~~~~---~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  207 (381)
                      .++.+++   ..+++++.++++|++.|+|.|...+..+.++.|+.|+++|...+++.+..+.+|..+++.+++.+.
T Consensus       102 ~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~  177 (438)
T PRK10133        102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999875   457899999999999999999999999999999988888777899999999999999999987654

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.88  E-value=7.2e-21  Score=175.69  Aligned_cols=166  Identities=19%  Similarity=0.191  Sum_probs=146.3

Q ss_pred             cccccccccccccCCCCCCCccccCChhH-HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhc
Q 016882           67 DIGSTSCATISIESPTLSGISWYDLSSVE-IGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAP  145 (381)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~  145 (381)
                      .+...+.+.|.+.++       +|+|.++ .|.+.++++.+++++.+++|+++||+|.|+++.++.+.+++..++.++++
T Consensus        41 ~R~n~s~a~p~L~~e-------lglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~  113 (511)
T TIGR00806        41 FRPGESFITPYLLTV-------LNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGT  113 (511)
T ss_pred             hhchHHHHHHHHHHH-------cCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH
Confidence            456677778888777       8999999 99999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHH---hhHH
Q 016882          146 DFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYG---ASTP  222 (381)
Q Consensus       146 ~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~---i~~~  222 (381)
                      ++..+.+.|++.|++.|... ....++..|+|+++|+++.++...+..+|.++++++++++. .. |||+.+-   +...
T Consensus       114 Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~-s~-gWr~y~~Ln~Isl~  190 (511)
T TIGR00806       114 SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV-TL-GWISYSTLNIISLV  190 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hc-CchhHHHHHHHHHH
Confidence            99999999999999999999 99999999999999999999999999999999999999944 44 8987654   4444


Q ss_pred             HHHHHHHHHhhcccchhHHH
Q 016882          223 LAVIMGMGMWWLPASPRWLL  242 (381)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~  242 (381)
                      ..++.++..+++|..++.+.
T Consensus       191 s~~~a~~~a~~LP~~~~sl~  210 (511)
T TIGR00806       191 FMTFSVFLALFLKRPKRSLF  210 (511)
T ss_pred             HHHHHHHHHHhCCCCchhhh
Confidence            44456677778886655443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.88  E-value=9.4e-21  Score=181.43  Aligned_cols=159  Identities=14%  Similarity=0.131  Sum_probs=139.1

Q ss_pred             cccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhch
Q 016882           67 DIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPD  146 (381)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~  146 (381)
                      .....+...+.+.++       +|.+.++.+++.+.+.++..++.++.|+++||+|||++++.+.++.+++.++++++++
T Consensus        34 ~~~~~~~~~~~i~~~-------~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~  106 (455)
T TIGR00892        34 FPKAVTVFFKELQQI-------FQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSN  106 (455)
T ss_pred             hhcchhhhHHHHHHH-------hCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhh
Confidence            345566677888777       8999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH-HHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHH
Q 016882          147 FIIMVV-GRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAV  225 (381)
Q Consensus       147 ~~~~~~-~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~  225 (381)
                      ++.+++ .|++.|++.+...+....++.++++ ++|+++.++.+.+..+|..+++++++.+.+.. |||+.|++.+++.+
T Consensus       107 ~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~-gwr~~f~~~~~~~~  184 (455)
T TIGR00892       107 VIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESF-GWRGSFLILGGLLL  184 (455)
T ss_pred             HHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHH
Confidence            988875 5689999998776777788899996 78999999999999999999999999998877 99999999999887


Q ss_pred             HHHHHHhhc
Q 016882          226 IMGMGMWWL  234 (381)
Q Consensus       226 ~~~~~~~~~  234 (381)
                      +..+..++.
T Consensus       185 ~~~v~~~~~  193 (455)
T TIGR00892       185 HCCVCGALM  193 (455)
T ss_pred             HHHHHHHHh
Confidence            665544443

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.88  E-value=3.3e-22  Score=197.37  Aligned_cols=278  Identities=16%  Similarity=0.186  Sum_probs=193.4

Q ss_pred             HHHHHHHhhhcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 016882           55 LFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLY  134 (381)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~  134 (381)
                      +..++..+...+..+..+..+++++++       |+++..+.|++.+.+.+++.++.++.+++.||+|||+++.++.+++
T Consensus        36 ~~~~~~~~~~~~~~g~~~~~l~~iek~-------F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~  108 (633)
T TIGR00805        36 LLLTCAQLQGLLYNGLVNSSLTTIERR-------FKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIM  108 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHhhchhhhhh-------hCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHH
Confidence            334445566666778888889999888       9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhc---------------------------------------------------hHHHHHHHHHHHHHHHhh
Q 016882          135 LVGALVTALAP---------------------------------------------------DFIIMVVGRFVFGIGIGL  163 (381)
Q Consensus       135 ~~~~~~~~~~~---------------------------------------------------~~~~~~~~r~l~G~~~g~  163 (381)
                      +++++++++.+                                                   .+..++++|++.|+|.+.
T Consensus       109 ~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~  188 (633)
T TIGR00805       109 GLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATP  188 (633)
T ss_pred             HHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCc
Confidence            99999987753                                                   245678999999999999


Q ss_pred             HhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhccc---------------------chhHHHHHhhHH
Q 016882          164 AMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV---------------------AGWRYMYGASTP  222 (381)
Q Consensus       164 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---------------------~~w~~~f~i~~~  222 (381)
                      .++...+++.|++|+++|+..+++++....+|.++|+++++.+.+.+                     +.|+..|++.++
T Consensus       189 ~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~  268 (633)
T TIGR00805       189 IFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGG  268 (633)
T ss_pred             chhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999987532                     237888999888


Q ss_pred             HHHHHHHHHhhcccchhHHHHhhccccCcchhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhhccccccccchhhcc
Q 016882          223 LAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFH  302 (381)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (381)
                      +.++..+.++++|++.+....     +.+.  +.++.++ .   + ...++    ...+.    ....++....++.+++
T Consensus       269 l~~l~~v~l~~~p~~lp~~~~-----~~~~--~~~~~~~-~---~-~~~~~----~~~~~----~~~~~~~~~~~~~Ll~  328 (633)
T TIGR00805       269 VALLTSIPFFFFPKALPKEGK-----RVNV--DVHETEK-L---E-KSEDK----SRKKN----SDITKDFPKIIKRLLC  328 (633)
T ss_pred             HHHHHHHHHHhCccccCCccc-----ccch--hhhhhhc-c---c-ccccc----cchhh----hhhHHHHHHHHHHHHc
Confidence            888766666666654221000     0000  0000000 0   0 00000    00000    0000111234566777


Q ss_pred             ccchHHHHHHHHHHHHHHhhchhHHHhcHHHHHHH-cCCCCCchhHHHHHHHHH-HHHHHhHHH
Q 016882          303 GKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGL-FKVGSCTLF  364 (381)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~-~~~i~~~~~  364 (381)
                      ++.+....+    ..+.....+..+..|.|.++++ .|+ +...+.....+..+ ..+++.+++
T Consensus       329 n~~f~~~~l----~~~~~~~~~~~~~~~lP~yl~~~~g~-s~~~ag~l~~~~~i~~~~vG~~l~  387 (633)
T TIGR00805       329 NPIYMLVIL----AQVIDSLAFNGYITFLPKYLENQYGI-SSAEANFLIGVVNLPAAGLGYLIG  387 (633)
T ss_pred             CcHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHcCC-cHHHHHHHhhhhhhhHHHHHHhhh
Confidence            764433333    3333344456777889988886 588 55666555555444 345555554

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.87  E-value=1.6e-20  Score=176.77  Aligned_cols=165  Identities=18%  Similarity=0.246  Sum_probs=145.3

Q ss_pred             ccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhc
Q 016882           66 YDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAP  145 (381)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~  145 (381)
                      +......+..|.+.++       +|.++.+.+++.+++.++..++++++|+++||+|||+.+.++.++..++.+++.+.+
T Consensus        22 ~~~~~~~p~~~~i~~~-------~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~   94 (394)
T PRK11652         22 MAQTIYVPAIADMARD-------LNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAH   94 (394)
T ss_pred             HHHHHHhccHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHc
Confidence            3444555667777776       899999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHH
Q 016882          146 DFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAV  225 (381)
Q Consensus       146 ~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~  225 (381)
                      +++.+++.|++.|++.+...+....+..|.+++++|+.+.++.+.+..++..++|.+++.+.+.. +||+.|++.+++.+
T Consensus        95 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~-g~~~~f~~~~~~~~  173 (394)
T PRK11652         95 SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLF-GWRACYLFLLLLGA  173 (394)
T ss_pred             cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHH
Confidence            99999999999999998888888889999999999999999999999999999999999998876 99999999888776


Q ss_pred             HHH-HHHhhcccch
Q 016882          226 IMG-MGMWWLPASP  238 (381)
Q Consensus       226 ~~~-~~~~~~~~~~  238 (381)
                      +.. +..++.||++
T Consensus       174 ~~~~~~~~~~~~~~  187 (394)
T PRK11652        174 GVTFSMARWMPETR  187 (394)
T ss_pred             HHHHHHHHhCCccC
Confidence            544 3445567653

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.87  E-value=1.1e-20  Score=175.97  Aligned_cols=258  Identities=15%  Similarity=0.112  Sum_probs=175.3

Q ss_pred             Hhhhccccccccccccc-ccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 016882           61 GLLYGYDIGSTSCATIS-IESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGAL  139 (381)
Q Consensus        61 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~  139 (381)
                      .+..........+..|. +.++       +|++..+.+++.+++.+++.+++++.|+++||+|||+.+.++.++..++.+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~-------~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~   82 (366)
T TIGR00886        10 FFLSFSVWFAFSPLAVQMIKDD-------LGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCL   82 (366)
T ss_pred             HHHHHHHHHHhHHhhhHHHHHH-------hCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence            34444455566777785 6666       899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhc-hHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcc---------
Q 016882          140 VTALAP-DFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDL---------  209 (381)
Q Consensus       140 ~~~~~~-~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---------  209 (381)
                      ++++++ +++.+++.|++.|++.+. .+....++.|++|+++|+++.++......+|..+++.+++.+...         
T Consensus        83 ~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~  161 (366)
T TIGR00886        83 WAGLAVQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPA  161 (366)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            999999 999999999999998664 566788999999999999999999987788887777777665531         


Q ss_pred             cchhHHHH-HhhHHHHHHH-HHHHhhcccchhHHHHhhccccCcchhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhh
Q 016882          210 VAGWRYMY-GASTPLAVIM-GMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELS  287 (381)
Q Consensus       210 ~~~w~~~f-~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (381)
                      ..+||+.| ++.+++..+. ++...+.+|+|+..   .           ++.+.     +..+...  ..          
T Consensus       162 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-----------~~~~~-----~~~~~~~--~~----------  210 (366)
T TIGR00886       162 HLAWGWAFVIVPAGILLLPALLIFFVGADTPPGK---P-----------ATGKL-----SFKGARW--SV----------  210 (366)
T ss_pred             cccccchhHHHHHHHHHHHHHHHHHhcccCCccc---c-----------cchhc-----ccccccc--cc----------
Confidence            23899999 4445554443 33444456655310   0           00000     0000000  00          


Q ss_pred             hccccccccchhhccccchHHHHHHHHHHHHHHhhchhHHHhcHHHHHHH-cCCCCCchhHHHHHHHHHHHHHHhHHH
Q 016882          288 YVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGLFKVGSCTLF  364 (381)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~i~~~~~  364 (381)
                        ++......++.++++..+...+...+.    ......+..+.|.++++ .|+ +..++.....+..+..+++.+++
T Consensus       211 --~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~  281 (366)
T TIGR00886       211 --GTGALGDQLKVFRDRHTWILALLYSVT----FGSFLGVSSIFAMFFKDQFGL-SKVTAGAYASLGGLLGSLARPLG  281 (366)
T ss_pred             --cchhHHHHHHHHhccchhhHHHHHHHH----HHHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHHHhhcc
Confidence              000001234455555444333322222    22234556677777765 588 66677777777777777777654

>PRK10504 putative transporter; Provisional

Probab=99.87  E-value=1.3e-19  Score=174.67  Aligned_cols=172  Identities=17%  Similarity=0.297  Sum_probs=153.2

Q ss_pred             HHHHHhhhcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 016882           57 PALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLV  136 (381)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~  136 (381)
                      ++++.++..++.....+..|.+.++       +|.+..+.+++.+.+.++..++.+++|+++||+|||++++.+.++..+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~p~~~~~-------~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~   87 (471)
T PRK10504         15 VAFGFFMQSLDTTIVNTALPSMAQS-------LGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTL   87 (471)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHH-------hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence            3445566777777778889998887       899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHH
Q 016882          137 GALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYM  216 (381)
Q Consensus       137 ~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~  216 (381)
                      +.+++.++++++.++++|++.|++.+...+...+++.|++|+++|+++.++......+|..++|.+++.+.+.. +||+.
T Consensus        88 ~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~-gw~~~  166 (471)
T PRK10504         88 GSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYA-SWHWI  166 (471)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhc-cHHHH
Confidence            99998999999999999999999999999999999999999999999999999999999999999999999887 99999


Q ss_pred             HHhhHHHHHHHHHHHhh-ccc
Q 016882          217 YGASTPLAVIMGMGMWW-LPA  236 (381)
Q Consensus       217 f~i~~~~~~~~~~~~~~-~~~  236 (381)
                      |++...+.++..+.... .|+
T Consensus       167 f~~~~~~~~l~~~~~~~~~~~  187 (471)
T PRK10504        167 FLINIPVGIIGAIATLMLMPN  187 (471)
T ss_pred             HHHHHHHHHHHHHHHHHhCCC
Confidence            99988777665544433 444

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.87  E-value=7.9e-20  Score=172.48  Aligned_cols=172  Identities=19%  Similarity=0.268  Sum_probs=150.8

Q ss_pred             HHHHHHHhhhcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 016882           55 LFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLY  134 (381)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~  134 (381)
                      ..++...+..++.....++..|.++++       +|++..+.+++.+.+.+++.+++++.|++.||+|||+++.++.++.
T Consensus         6 ~~~~~~f~~~G~~~~~~~~l~~~~~~~-------~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~   78 (410)
T TIGR00885         6 ALITSLFALWGFANDITNPMVPQFQQA-------FTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLY   78 (410)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence            455666678888888888999999887       8999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH---hchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcc--
Q 016882          135 LVGALVTAL---APDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDL--  209 (381)
Q Consensus       135 ~~~~~~~~~---~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~--  209 (381)
                      +++.+++..   .++++.+++.|++.|+|.|...+..+.++.+..|+++|++.+++.+...++|..+++.+++.+...  
T Consensus        79 ~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~  158 (410)
T TIGR00885        79 ALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNL  158 (410)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            999888644   358999999999999999999999999999999999999999999999999999999999887532  


Q ss_pred             -----------------------cchhHHHHHhhHHHHHHHHHHHhh
Q 016882          210 -----------------------VAGWRYMYGASTPLAVIMGMGMWW  233 (381)
Q Consensus       210 -----------------------~~~w~~~f~i~~~~~~~~~~~~~~  233 (381)
                                             ..+||++|++.+++.++..+...+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~  205 (410)
T TIGR00885       159 PHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIML  205 (410)
T ss_pred             ccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                   126999999888877765444433

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.87  E-value=7.2e-20  Score=171.59  Aligned_cols=148  Identities=24%  Similarity=0.286  Sum_probs=135.8

Q ss_pred             HHHHHHHhhhcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 016882           55 LFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLY  134 (381)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~  134 (381)
                      ..+..+.+..........+..|.+.++       +|.|..+.|++.+.+.++..+++++.|+++||+|||+.+..+.++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~lp~~~~~-------~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~   81 (381)
T PRK03633          9 LLLLCGLLLLTLAIAVLNTLVPLWLAQ-------EHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIF   81 (381)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            334455567778888888999999887       8999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcc
Q 016882          135 LVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDL  209 (381)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  209 (381)
                      +++.++++++++++.++++|++.|++.+...+.....+.+..++++|++++++++.+..+|..+|+.+++.+.+.
T Consensus        82 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~  156 (381)
T PRK03633         82 AAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTE  156 (381)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            999999999999999999999999999988888888888999999999999999999999999999999998765

>TIGR00896 CynX cyanate transporter

Probab=99.86  E-value=1.2e-19  Score=168.54  Aligned_cols=236  Identities=19%  Similarity=0.195  Sum_probs=177.5

Q ss_pred             cccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhchHH
Q 016882           69 GSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFI  148 (381)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~  148 (381)
                      ...++.+|.+.++       +|++..+.+++.+++.++..+++++.|+++||+|||+++.++.++..++.+.+ ..++++
T Consensus        17 ~~~~~~lp~l~~~-------~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~   88 (355)
T TIGR00896        17 TSVGPLLPQIRSA-------LGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTA   88 (355)
T ss_pred             ccCcccHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHH
Confidence            4567788888887       89999999999999999999999999999999999999999998888887777 778899


Q ss_pred             HHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccc-hhHHHHHhhHHHHHHH
Q 016882          149 IMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVA-GWRYMYGASTPLAVIM  227 (381)
Q Consensus       149 ~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~w~~~f~i~~~~~~~~  227 (381)
                      .+++.|++.|++.+...+....++.|++| ++|++++++.+.+..+|..+++.+.+.+.+..+ +||+.|.+.+++.++.
T Consensus        89 ~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~  167 (355)
T TIGR00896        89 LLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLA  167 (355)
T ss_pred             HHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence            99999999999999888888889999997 689999999999999999999999998887643 4999988777654433


Q ss_pred             HHHHhhcccchhHHHHhhccccCcchhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhhccccccccchhhccccchH
Q 016882          228 GMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLK  307 (381)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (381)
                      .+  .++|+.++.    .                        +.+                 ++.++...+++++++..+
T Consensus       168 ~~--~~~~~~~~~----~------------------------~~~-----------------~~~~~~~~~~~~~~~~~~  200 (355)
T TIGR00896       168 LL--AWIPQVRRR----V------------------------AAN-----------------QTTTRLTPVRIWRSPLAW  200 (355)
T ss_pred             HH--HHhhhhccc----c------------------------CCC-----------------CCCCCCCCchhhcCHhHH
Confidence            22  233432110    0                        000                 000112344566665443


Q ss_pred             HHHHHHHHHHHHHhhchhHHHhcHHHHHHHcCCCCCchhHHHHHHHHHHHHHHhHHHH
Q 016882          308 ALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKVGSCTLFF  365 (381)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~  365 (381)
                      ...+..    +.....+.....|.|.++++.|+ +.........+..+..+++.++.-
T Consensus       201 ~~~~~~----~~~~~~~~~~~~~lp~~~~~~g~-~~~~~g~~~~~~~~~~i~~~~~~g  253 (355)
T TIGR00896       201 QVTVFF----GLQSGLYYSLIGWLPAILISHGA-SAATAGSLLALMQLAQAASALLIP  253 (355)
T ss_pred             HHHHHH----HHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHhHH
Confidence            332222    22222345566788989888888 667777888888888888887744

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.86  E-value=6.9e-20  Score=172.40  Aligned_cols=160  Identities=21%  Similarity=0.287  Sum_probs=143.8

Q ss_pred             ccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhchHHH
Q 016882           70 STSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFII  149 (381)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~  149 (381)
                      ...+.+|.+.++       +|.+..+.++..+.+.++..+++++.|+++||+|||+.+.++.++..++.+++..+++++.
T Consensus        21 ~~~~~lp~~~~~-------~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~   93 (392)
T PRK10473         21 MYLVGLPRIAAD-------LNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSL   93 (392)
T ss_pred             HHhhhHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence            344668888777       8999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHH
Q 016882          150 MVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGM  229 (381)
Q Consensus       150 ~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~  229 (381)
                      ++++|++.|++.+...+....++.|++|+++|+++.++.+....+|..++|.+++.+.+.. +||+.|++.+++.++..+
T Consensus        94 ~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~-g~~~~~~~~~~~~~i~~~  172 (392)
T PRK10473         94 FLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKF-PWQSLFYTMAAMGILVLL  172 (392)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-ChHHHHHHHHHHHHHHHH
Confidence            9999999999999989999999999999999999999999999999999999999888776 999999999888776544


Q ss_pred             H-Hhhcccc
Q 016882          230 G-MWWLPAS  237 (381)
Q Consensus       230 ~-~~~~~~~  237 (381)
                      . .++.||+
T Consensus       173 ~~~~~~~~~  181 (392)
T PRK10473        173 LSLFILKET  181 (392)
T ss_pred             HHHHHcCCC
Confidence            4 4456665

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.86  E-value=4.8e-20  Score=172.51  Aligned_cols=162  Identities=17%  Similarity=0.282  Sum_probs=145.9

Q ss_pred             cccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhchHH
Q 016882           69 GSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFI  148 (381)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~  148 (381)
                      ....+..|.+.++       +|++..+.+++.+++.++..++.+++|+++||+|||+.+..+.++.+++.+++.+.++++
T Consensus         8 ~~~~p~~~~~~~~-------~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~   80 (377)
T PRK11102          8 DMYLPALPVIAAD-------FGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTID   80 (377)
T ss_pred             HHHhccHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHH
Confidence            3445667777776       899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHH
Q 016882          149 IMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMG  228 (381)
Q Consensus       149 ~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~  228 (381)
                      .++++|++.|++.+...+...+++.|++|+++|++++++.+....+|..+++.+++.+.+.. +||+.|++.+++.++..
T Consensus        81 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~  159 (377)
T PRK11102         81 QLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWF-SWHAIFWVLALAAILAA  159 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ChHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999998876 99999999888877654


Q ss_pred             H-HHhhcccch
Q 016882          229 M-GMWWLPASP  238 (381)
Q Consensus       229 ~-~~~~~~~~~  238 (381)
                      + ..++.||++
T Consensus       160 ~~~~~~~~~~~  170 (377)
T PRK11102        160 ALVFFFIPETL  170 (377)
T ss_pred             HHHHHhCCccC
Confidence            4 444566653

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.86  E-value=1.3e-19  Score=170.45  Aligned_cols=145  Identities=14%  Similarity=0.089  Sum_probs=128.6

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA  168 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~  168 (381)
                      +|.+..+.+++.+.+.+++.+.++++|+++||+|||++++++.++.+++.+++.+..+.   ++.|+++|++.+...|..
T Consensus        33 ~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~  109 (393)
T PRK11195         33 LHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAK  109 (393)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence            78889999999999999999999999999999999999999999999888887776664   778999999999999999


Q ss_pred             HHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHhhcccch
Q 016882          169 PMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASP  238 (381)
Q Consensus       169 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~  238 (381)
                      .+++.|++|+++|++++++.+....+|..+||.+++.+.+.  .|+..+.+.+...++..+..+.+||+|
T Consensus       110 ~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~--~~~~~~~i~~~~~~~~~~~~~~l~~~~  177 (393)
T PRK11195        110 YGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP--HAEAALAVCALIYLLAALFNLFIPRLG  177 (393)
T ss_pred             HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            99999999999999999999999999999999999999875  488777777666555555556677764

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.86  E-value=5.8e-20  Score=173.34  Aligned_cols=160  Identities=20%  Similarity=0.224  Sum_probs=135.4

Q ss_pred             Hhhhccccccccccccc-ccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 016882           61 GLLYGYDIGSTSCATIS-IESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGAL  139 (381)
Q Consensus        61 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~  139 (381)
                      .+...+......+.+|. +.++       +|.+..+.+++.+++.+++.+++++.|+++||+|||+++..+.++.+++.+
T Consensus        24 ~~~~~~~~~~~~~~l~~~i~~~-------~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~   96 (399)
T PRK05122         24 TFISYLTIGLPLAVLPGYVHDQ-------LGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGL   96 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-------cCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHH
Confidence            34444455556666765 3454       799999999999999999999999999999999999999999998887766


Q ss_pred             HHHHh--------chHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccc
Q 016882          140 VTALA--------PDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVA  211 (381)
Q Consensus       140 ~~~~~--------~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  211 (381)
                      .+.++        .+++.+++.|++.|++.+...+....++.|++|+++|++++++...+..+|.++++.+++.+.+.. 
T Consensus        97 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-  175 (399)
T PRK05122         97 LYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWG-  175 (399)
T ss_pred             HHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcc-
Confidence            65543        256788999999999999999999999999999999999999999999999999999999998887 


Q ss_pred             hhHHHHHhhHHHHHHHH
Q 016882          212 GWRYMYGASTPLAVIMG  228 (381)
Q Consensus       212 ~w~~~f~i~~~~~~~~~  228 (381)
                      +|++.+++.+++.++..
T Consensus       176 g~~~~~~~~~~~~~~~~  192 (399)
T PRK05122        176 GLAGLGLLIMLLALLGL  192 (399)
T ss_pred             cHHHHHHHHHHHHHHHH
Confidence            99999887766654433

>PRK12382 putative transporter; Provisional

Probab=99.85  E-value=3.3e-19  Score=167.79  Aligned_cols=151  Identities=17%  Similarity=0.250  Sum_probs=127.8

Q ss_pred             ccccccccccc-ccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH--
Q 016882           67 DIGSTSCATIS-IESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTAL--  143 (381)
Q Consensus        67 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~--  143 (381)
                      ......+.+|. +.++       +|.|..+.+++.+++.++..++++++|+++||+|||+.+..+.++..++.+.+..  
T Consensus        30 ~~~~~~p~l~~~l~~~-------lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~  102 (392)
T PRK12382         30 TVGLPLPVIPLFVHHD-------LGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAA  102 (392)
T ss_pred             HHHHHhhhhhHHHHHh-------cCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhh
Confidence            44455556665 3455       8999999999999999999999999999999999999999988877765543321  


Q ss_pred             ------hchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHH
Q 016882          144 ------APDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMY  217 (381)
Q Consensus       144 ------~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f  217 (381)
                            .++++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..++|++++.+.+.. |||+.+
T Consensus       103 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~-g~~~~~  181 (392)
T PRK12382        103 ILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHF-GFAALA  181 (392)
T ss_pred             ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhcc-ChHHHH
Confidence                  3578999999999999999888888899999999999999999999999999999999999998876 999877


Q ss_pred             HhhHHHHH
Q 016882          218 GASTPLAV  225 (381)
Q Consensus       218 ~i~~~~~~  225 (381)
                      ++..+..+
T Consensus       182 ~~~~~~~~  189 (392)
T PRK12382        182 LTTMVLPL  189 (392)
T ss_pred             HHHHHHHH
Confidence            76555433

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.85  E-value=3e-20  Score=167.86  Aligned_cols=283  Identities=16%  Similarity=0.208  Sum_probs=196.3

Q ss_pred             hHHHHHHHHHHHHHHhhhcccccccccccccccCCCCCCCcc-ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHH
Q 016882           47 VSAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISW-YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRR  125 (381)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~  125 (381)
                      .|+....+.++..+.+.++|+...++...+.+........+. =+.++.-.+.+..+.++|.++|++++|+++||+|||+
T Consensus        36 qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~  115 (538)
T KOG0252|consen   36 QWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKK  115 (538)
T ss_pred             hHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Confidence            334445558888899999999999998887766542221110 1366778899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhc-------hHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHH
Q 016882          126 ELILAALLYLVGALVTALAP-------DFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVG  198 (381)
Q Consensus       126 ~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~  198 (381)
                      ++...+++++++++++++..       -.+++...|+++|+|.|+.+|...+..+|....++||...+.+....++|...
T Consensus       116 vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gila  195 (538)
T KOG0252|consen  116 VYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILA  195 (538)
T ss_pred             hhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhh
Confidence            99999999999999777642       25788899999999999999999999999999999999999987777777777


Q ss_pred             HHHHHHHhhc----c----------cchhHHHHHhhHHHHHHHHHHHhhcccchhHHHHhhccccCcchhhHHHHHHHHH
Q 016882          199 GYGIGSLLVD----L----------VAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLC  264 (381)
Q Consensus       199 ~~~~~~~l~~----~----------~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (381)
                      |..++..+..    .          ..-||..|.+.+++.+.++...+.+||++++-....           ++.++..+
T Consensus       196 G~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~-----------~~~~~a~~  264 (538)
T KOG0252|consen  196 GGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVS-----------KKLKQAAG  264 (538)
T ss_pred             ccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhh-----------cCHhhhhh
Confidence            7766655541    1          125999999999999999888889999998853322           11111111


Q ss_pred             HHhCCCCCCCChhhHHHHHHhhhhccccccccch---hhccccchHHHHHHHHHHHHHHhhchhHHHhcHHHHHHHcCCC
Q 016882          265 RLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLR---EVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFS  341 (381)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  341 (381)
                      +..+..     ..+.+++.+. +...+.++.+++   ..+..++. +.++.....+|..=..++..+.+...+++..|+ 
T Consensus       265 d~~k~~-----~~~~~~~~~~-~~~~~~~~~~~~~F~~~f~~~hg-~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~-  336 (538)
T KOG0252|consen  265 DMKKVL-----SVDIEAESTA-ESDVPPPSNSFGLFSRLFLRWHG-KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGV-  336 (538)
T ss_pred             cccccc-----ccccchhhcc-ccCCCCcccccchHHHHHHHHHH-HHHHHHHHHHHhhhhhhhccccHHHHHHHhhcc-
Confidence            111100     0011111111 111111222222   22222222 445556666666656678888999999998887 


Q ss_pred             CCchhHH
Q 016882          342 AASDATR  348 (381)
Q Consensus       342 ~~~~~~~  348 (381)
                      ...+...
T Consensus       337 ~~~~~~~  343 (538)
T KOG0252|consen  337 IPSANTY  343 (538)
T ss_pred             CCCcchH
Confidence            4343333

>TIGR00897 2A0118 polyol permease family

Probab=99.84  E-value=2.9e-19  Score=168.72  Aligned_cols=230  Identities=12%  Similarity=0.065  Sum_probs=162.3

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH---H-hchHHHHHHHHHHHHHHHhhH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTA---L-APDFIIMVVGRFVFGIGIGLA  164 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~---~-~~~~~~~~~~r~l~G~~~g~~  164 (381)
                      +|.+..+.+++.+.+.++..+++++.|++.||+|||+++..+.++.+++.+++.   . .++++.+++.|++.|++.+..
T Consensus        43 ~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~  122 (402)
T TIGR00897        43 LGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLF  122 (402)
T ss_pred             hCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHH
Confidence            799999999999999999999999999999999999999999999988876553   3 257888899999999998888


Q ss_pred             hHHHHHHHHhhCCcccchhHHhHHHHHHHHHH-HHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHH-hhcccchhHHH
Q 016882          165 MHAAPMYIAETAPTPMRGQLISLKEFFIVLGM-VGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGM-WWLPASPRWLL  242 (381)
Q Consensus       165 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~-~~~~~~~~~~~  242 (381)
                      .+.....+.+++|+++|++++|+.+.+.++|. .+++.+++.+.+.. ||+..++......++..+.. ++.++.++.  
T Consensus       123 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  199 (402)
T TIGR00897       123 AYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAF-GEMNTLWSALAFVLTGGVIALFSNKDIFTP--  199 (402)
T ss_pred             HhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-chHHHHHHHHHHHHHHHHHHHhccCCCCCc--
Confidence            77778888999999999999999999999997 68999998888776 76666554444333332222 333432110  


Q ss_pred             HhhccccCcchhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhhccccccccchhhccccchHHHHHHHHHHHHHHhh
Q 016882          243 LCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQIT  322 (381)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (381)
                            + +     ++             ++   ++.           ++.+..++++++++..+...+   . .+.+..
T Consensus       200 ------~-~-----~~-------------~~---~~~-----------~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~  236 (402)
T TIGR00897       200 ------Q-H-----MQ-------------TR---EKF-----------SELGKAATILFTNPNVLLGGM---V-RIINTI  236 (402)
T ss_pred             ------c-c-----cc-------------CC---cch-----------hhHHHHHHHHHcChhHHHHHH---H-HHHHHH
Confidence                  0 0     00             00   000           000112345666654433222   2 222333


Q ss_pred             chhHHHhcHHHHHHHcCCCCCchhHHHHHHHHHHHHHHhHHHH
Q 016882          323 GQPSVLYYAASILQSAGFSAASDATRVSILLGLFKVGSCTLFF  365 (381)
Q Consensus       323 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~  365 (381)
                      +......|.|.++++.|+ +..+.........+..+++.++..
T Consensus       237 ~~~~~~~~~p~~~~~~g~-s~~~~~~~~~~~~~~~~ig~~~~g  278 (402)
T TIGR00897       237 GLFGFAVFLPMFVAELGF-STSEWLQIWGTFFFTNIVFNVIFG  278 (402)
T ss_pred             HHHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHHHHHHHH
Confidence            456677888999998898 656666666667777777777644

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.84  E-value=5.2e-19  Score=165.25  Aligned_cols=171  Identities=22%  Similarity=0.201  Sum_probs=139.4

Q ss_pred             Hhhhcccccccccccccc-cCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHH-HHHHHHHHH
Q 016882           61 GLLYGYDIGSTSCATISI-ESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELIL-AALLYLVGA  138 (381)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~-~~~~~~~~~  138 (381)
                      ++..++......+.+|.+ .++       +|.+..+.+++.+++.++..+.+++.|+++||+|||+.+++ +..+..++.
T Consensus         6 ~~~~~~~~~~~~~~l~~~l~~~-------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~   78 (375)
T TIGR00899         6 AFLTGIAGALQFPTLSLFLSEE-------VRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALAC   78 (375)
T ss_pred             HHHHHHHHHHHhhHHHHHHHcc-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Confidence            345555556666666654 455       89999999999999999999999999999999999887654 566666777


Q ss_pred             HHHHHhchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhH--HhHHHHHHHHHHHHHHHHHHHhhcccchhHHH
Q 016882          139 LVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQL--ISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYM  216 (381)
Q Consensus       139 ~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~--~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~  216 (381)
                      ++++++++++.+++.|++.|.+.+...+....+..|+.|++.|+..  .+....+.++|.++++.+++.+.+.. +||+.
T Consensus        79 ~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~  157 (375)
T TIGR00899        79 LLFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGF-GFTVM  157 (375)
T ss_pred             HHHHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhc-ccHHH
Confidence            8888899999999999999888787888888889999888777754  57788888999999999999998877 99999


Q ss_pred             HHhhHHHHHHHHHHH-hhcccchh
Q 016882          217 YGASTPLAVIMGMGM-WWLPASPR  239 (381)
Q Consensus       217 f~i~~~~~~~~~~~~-~~~~~~~~  239 (381)
                      |++.+++.++..+.. +++||.|+
T Consensus       158 f~~~~~~~~~~~~~~~~~~~~~~~  181 (375)
T TIGR00899       158 FLTAALAFVLCGVLVWLFLPSYPR  181 (375)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCccc
Confidence            999998877665544 44787653

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.84  E-value=4.3e-19  Score=166.53  Aligned_cols=229  Identities=24%  Similarity=0.310  Sum_probs=159.6

Q ss_pred             CChhHHHHHHHH-----HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhchHH--------HHHHHHHHH
Q 016882           91 LSSVEIGLITSG-----SLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFI--------IMVVGRFVF  157 (381)
Q Consensus        91 ~~~~~~~~~~~~-----~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~r~l~  157 (381)
                      .++.+.+.+.+.     ..++..+++++.|+++||+|||+++.++.++..++.++++++++++        .++++|++.
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~  106 (394)
T TIGR00883        27 SGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQ  106 (394)
T ss_pred             CCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHH
Confidence            344555554443     3334457899999999999999999999999999999999988865        478899999


Q ss_pred             HHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhc-------ccchhHHHHHhhHHHHHHHHHH
Q 016882          158 GIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVD-------LVAGWRYMYGASTPLAVIMGMG  230 (381)
Q Consensus       158 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-------~~~~w~~~f~i~~~~~~~~~~~  230 (381)
                      |++.+...+....++.|++|+++|++..++.+.+..+|.++++.++..+..       ...+||+.|++.+++.++..+.
T Consensus       107 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  186 (394)
T TIGR00883       107 GFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYL  186 (394)
T ss_pred             HhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999988776542       1238999999888777666555


Q ss_pred             HhhcccchhHHHHhhccccCcchhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhhccccccccchhhccccchHHHH
Q 016882          231 MWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALI  310 (381)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (381)
                      ....||+|++...++                                           ++++.+.+.++.++++. ++..
T Consensus       187 ~~~~~~~~~~~~~~~-------------------------------------------~~~~~~~~~~~~~~~~~-~~~~  222 (394)
T TIGR00883       187 RRNLEETPVFEKAQE-------------------------------------------KHKKKRGPIRETLTKHR-KPFL  222 (394)
T ss_pred             HHhcCCChhHHHHHh-------------------------------------------ccccccCCHHHHHHhch-HHHH
Confidence            555676654211000                                           00111223444555432 1223


Q ss_pred             HHHHHHHHHHhhchhHHHhcHHHHH-HHcCCCCCchhHHHHHHHHHHHHHHhHHHH
Q 016882          311 IGAGLVLFQQITGQPSVLYYAASIL-QSAGFSAASDATRVSILLGLFKVGSCTLFF  365 (381)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~  365 (381)
                      ...... +...........+.|.++ ++.|. +.........+..+..+++.+++.
T Consensus       223 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~g  276 (394)
T TIGR00883       223 LGLGLV-IATTTTFYLITTYLPTYLTQTLGL-SANSALLVLMLSLILFFITIPLSG  276 (394)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHH
Confidence            322222 223333455667778887 45687 656666666677777777666543

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.83  E-value=8.6e-19  Score=161.69  Aligned_cols=168  Identities=35%  Similarity=0.523  Sum_probs=152.1

Q ss_pred             HHHHhhhcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 016882           58 ALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVG  137 (381)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~  137 (381)
                      ....+...+......+..+.+.++       +|.+..+.+++.+...++..+++++.|+++||+|||+.+.++.++..++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~   77 (352)
T cd06174           5 FLGFFLSGLDRGLLSPALPLLAED-------LGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALG   77 (352)
T ss_pred             HHHHHHHHHhhhhhHhhHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHH
Confidence            344456666777777778888776       7899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHH
Q 016882          138 ALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMY  217 (381)
Q Consensus       138 ~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f  217 (381)
                      .++..+.++++.++++|++.|++.+...+...+++.|++|+++|++.+++.+....+|..+++.+++.+.+.. +||+.+
T Consensus        78 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~  156 (352)
T cd06174          78 SLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESL-GWRWLF  156 (352)
T ss_pred             HHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999886 899999


Q ss_pred             HhhHHHHHHHHHHHhh
Q 016882          218 GASTPLAVIMGMGMWW  233 (381)
Q Consensus       218 ~i~~~~~~~~~~~~~~  233 (381)
                      ++.+++.++..+...+
T Consensus       157 ~~~~~~~~~~~~~~~~  172 (352)
T cd06174         157 LILAILGLLLALLLLF  172 (352)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9998887776655544

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.83  E-value=1.9e-19  Score=172.11  Aligned_cols=281  Identities=16%  Similarity=0.087  Sum_probs=197.0

Q ss_pred             cccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhchHHHH
Q 016882           71 TSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIM  150 (381)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~  150 (381)
                      .+...+.+.++       ++.+.++.+|+.++......+.+++.+.+.||+|.|++.++|.++..++.++.++++++|.+
T Consensus        65 ~Gv~~~~~~~~-------f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l  137 (509)
T KOG2504|consen   65 FGLLFEELMDY-------FGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQL  137 (509)
T ss_pred             ehhhHHHHHHH-------hCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            33566777776       88899999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHH-HHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHH
Q 016882          151 VVGR-FVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGM  229 (381)
Q Consensus       151 ~~~r-~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~  229 (381)
                      ++.. ++.|+|.|..+....+.+..+|+ |+|+.+.|+...+.++|.++-|.+...+.+.+ |||+.+++.+.+.+-+++
T Consensus       138 ~lt~gvi~G~G~~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~-G~r~~~l~~~~~~l~~~~  215 (509)
T KOG2504|consen  138 YLTFGVIGGLGLGLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLSKY-GWRGALLIFGGISLNVLV  215 (509)
T ss_pred             HHHHHHHhhccchhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHH
Confidence            8866 77899999999999999998886 88999999999999999999999999999998 999999999888876655


Q ss_pred             HHhhc-ccchhHHHHhhccccCcchhhHHHHHHHHHHHhCC-C-CCCC-ChhhHHHHHHhhhhccc--cccccc----hh
Q 016882          230 GMWWL-PASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQ-S-IGDS-APTEVDEILTELSYVGE--DKEVSL----RE  299 (381)
Q Consensus       230 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~-~~~~~~~~~~~~~~~~~--~~~~~~----~~  299 (381)
                      ..... |.++..... +.++.++.....+......++.... + ...+ ...+.++.++. +++..  ..+...    .+
T Consensus       216 ~~~~~rp~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~  293 (509)
T KOG2504|consen  216 AGALLRPLSPPKKPN-EEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRG-PDKWRNSPLQAFLSMLDLS  293 (509)
T ss_pred             HHHHcCCCCcCCCch-hhhhhccccccccccccccccccccCCCCCCcccccchhhhhhC-CccccccchhhhhhhhhHH
Confidence            55543 322221000 0000000000000000000000000 0 0000 00011111111 01011  111111    35


Q ss_pred             hccccchHHHHHHHHHHHHHHhhchhHHHhcHHHHHHHcCCCCCchhHHHHHHHHHHHHHHhHHHHHH
Q 016882          300 VFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKVGSCTLFFMS  367 (381)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~  367 (381)
                      ++++    +.++.+.+.......++.....++|.+.++.|+ +..++.....+.++..+++.++..+.
T Consensus       294 ll~~----~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~-~~~~aa~l~Siigi~~i~gRi~~G~l  356 (509)
T KOG2504|consen  294 LLKD----PKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGL-SSNDAAFLLSIIGVSDIIGRIILGLL  356 (509)
T ss_pred             HHcC----chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-ChhhhHHHHHHHHHhhhhhhhhhhhh
Confidence            6665    445555555555666788889999999999999 88999999999999999999986654

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.83  E-value=1.6e-19  Score=171.39  Aligned_cols=241  Identities=17%  Similarity=0.115  Sum_probs=174.8

Q ss_pred             cccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH-----
Q 016882           69 GSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTAL-----  143 (381)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~-----  143 (381)
                      .......|.+.++       ++.+..+.|++.+.+.++..+++++.|+++||+|||+.+..+.++.+++.+..+.     
T Consensus        34 ~~~~~~~~~~~~~-------~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~  106 (417)
T PRK10489         34 GLLGVAVPVQIQM-------MTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLP  106 (417)
T ss_pred             HHHHHHHHHHHHH-------HHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcC
Confidence            3444456666555       6778999999999999999999999999999999999999888877776655442     


Q ss_pred             hchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHH
Q 016882          144 APDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPL  223 (381)
Q Consensus       144 ~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~  223 (381)
                      .++++.+++.|++.|++.+...+...+++.|++|+++|+++.++.+....+|..+|+.+++.+.+.. +|++.|++.++.
T Consensus       107 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~-~~~~~~~~~~~~  185 (417)
T PRK10489        107 EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAG-GVAWNYGLAAAG  185 (417)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHH-hhHHHHHHHHHH
Confidence            4678899999999999999888888999999999999999999999999999999999999998876 899999988888


Q ss_pred             HHHHHHHHhhcccchhHHHHhhccccCcchhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhhccccccccchhhccc
Q 016882          224 AVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHG  303 (381)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (381)
                      .++.++..+.+|++++..       +++                     +   ...+           +....++..+++
T Consensus       186 ~~~~~~~~~~l~~~~~~~-------~~~---------------------~---~~~~-----------~~~~~~~~~~~~  223 (417)
T PRK10489        186 TFITLLPLLRLPALPPPP-------QPR---------------------E---HPLR-----------SLLAGFRFLLAS  223 (417)
T ss_pred             HHHHHHHHHhCCCCCCCC-------ccc---------------------c---cchH-----------HHHHHHHHHHcC
Confidence            777666666677653210       000                     0   0000           001123344555


Q ss_pred             cchHHHHHHHHHHHHHHhhchhHHHhcHHHHHHH-cCCCCCchhHHHHHHHHHHHHHHhHHHH
Q 016882          304 KCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGLFKVGSCTLFF  365 (381)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~i~~~~~~  365 (381)
                      +..+...+...+..+     ......+.|.+.++ .|+ +...........++..+++.++.-
T Consensus       224 ~~~~~~~~~~~~~~~-----~~~~~~~~p~~~~~~~g~-~~~~~g~~~~~~~~g~~ig~~~~~  280 (417)
T PRK10489        224 PVVGGIALLGGLLTM-----ASAVRVLYPALADEVWQM-GAAQIGLLYAAVPLGAALGALTSG  280 (417)
T ss_pred             hHHHHHHHHHHHHHH-----HHhHHHhhHHHHHhccCC-ChhHhHHHHHHHHHHHHHHHHHHH
Confidence            544333332222111     23345567777777 688 666667777777777777777644

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.83  E-value=3.6e-18  Score=152.84  Aligned_cols=254  Identities=20%  Similarity=0.203  Sum_probs=205.9

Q ss_pred             HHHHHHHhhhcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 016882           55 LFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLY  134 (381)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~  134 (381)
                      +......++.++......+.+|++.+.       ++++..+++++..+++.++.+.+++.|++.+|+|+|+.+++|+.+.
T Consensus        16 v~~t~lFfl~G~~~~l~diLip~l~~~-------f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~   88 (422)
T COG0738          16 VLLTSLFFLWGFITCLNDILIPHLKEV-------FDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLY   88 (422)
T ss_pred             HHHHHHHHHHHHHhhcchhhHHHHHHH-------hCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHH
Confidence            444555678888888999999999987       9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH---HhchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcc--
Q 016882          135 LVGALVTA---LAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDL--  209 (381)
Q Consensus       135 ~~~~~~~~---~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~--  209 (381)
                      ++++.+..   ...++..++++-++.|.|.+...+..+.++..+.+++.....+++.+..+++|+.++|.+++.+..+  
T Consensus        89 avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~  168 (422)
T COG0738          89 AVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGV  168 (422)
T ss_pred             HHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Confidence            99999885   4568999999999999999999999999999999999999999999999999999999999998863  


Q ss_pred             ----------------cchhHHHHHhhHHHHHHHHHHHhhcc--cchhHHHHhhccccCcchhhHHHHHHHHHHHhCCCC
Q 016882          210 ----------------VAGWRYMYGASTPLAVIMGMGMWWLP--ASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSI  271 (381)
Q Consensus       210 ----------------~~~w~~~f~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (381)
                                      ...|+++|.+.+...+++.+.....+  +.+.                 ++             
T Consensus       169 ~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~-----------------~~-------------  218 (422)
T COG0738         169 ALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQV-----------------AA-------------  218 (422)
T ss_pred             hhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCc-----------------cc-------------
Confidence                            12578888887777776665555432  2210                 00             


Q ss_pred             CCCChhhHHHHHHhhhhccccccccchhhccccchHHHHHHHHHHHHHHhhchhHHHhcHHHHHHH-cCCCCCchhHHHH
Q 016882          272 GDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVS  350 (381)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~  350 (381)
                                     +++.+.+.....+++++++.+.-.+..+++...+    ..+..|.+.++.+ .|. +..++....
T Consensus       219 ---------------~~~~~~~~~~~~~l~~~~~~~~gvl~~FlYVG~E----va~gsfl~~y~~~~~g~-~~~~aa~~~  278 (422)
T COG0738         219 ---------------PSLGASGSAGLSSLFQNKHLRLGVLAIFLYVGAE----VAIGSFLVSYLEELLGL-NEQQAAYYL  278 (422)
T ss_pred             ---------------ccccccccchHHHHHhChHHHHHHHHHHHHHhHH----HHHHHHHHHHHHhcCCc-cHHHHHHHH
Confidence                           0001111125678888887777666666665554    5666777888777 577 888899999


Q ss_pred             HHHHHHHHHHhHHHH
Q 016882          351 ILLGLFKVGSCTLFF  365 (381)
Q Consensus       351 ~~~~~~~~i~~~~~~  365 (381)
                      +.+.+..++|.+++.
T Consensus       279 s~~~~~~~vGRFig~  293 (422)
T COG0738         279 SFFWVGFMVGRFIGS  293 (422)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998754

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.83  E-value=3.7e-18  Score=160.92  Aligned_cols=146  Identities=21%  Similarity=0.245  Sum_probs=133.2

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA  168 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~  168 (381)
                      +|++..+.|++.+...+...+.+++.|+++||+|||+++..+.++.+++.+++.+.++++.++++|++.|++.+...+..
T Consensus        41 ~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~  120 (400)
T PRK11646         41 LGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPR  120 (400)
T ss_pred             hCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999888888


Q ss_pred             HHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHH-Hhhccc
Q 016882          169 PMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMG-MWWLPA  236 (381)
Q Consensus       169 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~-~~~~~~  236 (381)
                      .+++.|++|+++|++++++......+|..+||.+++.+. .. +||+.|++.++..++..++ .++.||
T Consensus       121 ~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~-g~~~~f~~~~~~~~~~~i~~~~~~~~  187 (400)
T PRK11646        121 TALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QY-DFRLVCATGAVLFVLAAAFNAWLLPA  187 (400)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-hHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            999999999999999999999999999999999999998 44 9999999988877665433 333443

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.82  E-value=6.1e-18  Score=162.33  Aligned_cols=184  Identities=18%  Similarity=0.253  Sum_probs=145.8

Q ss_pred             hHHHHHHHHHHHHHHhhhcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHH
Q 016882           47 VSAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRE  126 (381)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~  126 (381)
                      .++.+..+...++.....++.....+..++.+..+       +|-+ ....|+.+...++..++.++.|+++|.||||..
T Consensus        39 s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~d-------iG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~  110 (599)
T PF06609_consen   39 SPRFIASFAAFSLAVIAAYFVLVLPASILPYINAD-------IGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYF  110 (599)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHh-------cCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHH
Confidence            34444444445554444445555555666777776       6754 678899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHh
Q 016882          127 LILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLL  206 (381)
Q Consensus       127 l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  206 (381)
                      ++.+.++..++.++++.++|...++.+..+.|+|.|.... ....++|..|.|.|....++...........++.++..+
T Consensus       111 ~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~  189 (599)
T PF06609_consen  111 FIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLF  189 (599)
T ss_pred             HHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHh
Confidence            9999999999999999999999999999999999886664 466689999999999988887777767777888888777


Q ss_pred             hcccchhHHHHHhhHHHHHHHHHHHhhcccchhH
Q 016882          207 VDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRW  240 (381)
Q Consensus       207 ~~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~  240 (381)
                      .... +|||.|++.+++..+.+++.+++..+|++
T Consensus       190 ~~~~-~WRw~~~~~~i~~~i~~vl~~~fY~PP~~  222 (599)
T PF06609_consen  190 AAHS-GWRWIFYIFIIWSGIALVLIFFFYFPPPR  222 (599)
T ss_pred             ccCC-CcchHHHHHHHHHHHHHHHHHHHhCCCch
Confidence            6654 99999999999887766555544444443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.82  E-value=4.6e-18  Score=160.80  Aligned_cols=168  Identities=20%  Similarity=0.141  Sum_probs=141.5

Q ss_pred             HhhhcccccccccccccccCCCCCCCccccCChhH-----HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 016882           61 GLLYGYDIGSTSCATISIESPTLSGISWYDLSSVE-----IGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYL  135 (381)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~  135 (381)
                      .++.++......+.+|.+.++       +|.+..+     .+++.+++.++..+++++.|+++||+|||+.+..+.++.+
T Consensus        23 ~~~~~~~~~~~~~~l~~~~~~-------~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   95 (408)
T PRK09874         23 CFLTGAAFSLVMPFLPLYVEQ-------LGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMG   95 (408)
T ss_pred             HHHHHHHHHHhhhhHHHHHHH-------hCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHH
Confidence            344455555666677777766       6777544     4889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHH
Q 016882          136 VGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRY  215 (381)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~  215 (381)
                      ++.+++.+.++++.+++.|++.|++.+ ..+....++.+++|+++|++++++...+..+|..+++.+++.+.+.. +||+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~  173 (408)
T PRK09874         96 IVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSY-GLRP  173 (408)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHH
Confidence            999988889999999999999999865 55777888999999999999999999999999999999999998876 9999


Q ss_pred             HHHhhHHHHHHHHHHH-hhcccc
Q 016882          216 MYGASTPLAVIMGMGM-WWLPAS  237 (381)
Q Consensus       216 ~f~i~~~~~~~~~~~~-~~~~~~  237 (381)
                      .|++.+++.++..+.. ++.||+
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~  196 (408)
T PRK09874        174 VFFITASVLFLCFLVTLFCIREN  196 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccC
Confidence            9999988877655444 445554

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.81  E-value=7.4e-19  Score=158.23  Aligned_cols=238  Identities=20%  Similarity=0.190  Sum_probs=183.8

Q ss_pred             ccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhch---
Q 016882           70 STSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPD---  146 (381)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~---  146 (381)
                      ..++..+.+.++       +|+|+.|.+++.++..+...+..++.|.+.||+|.|++..+++++..+.++..+++.+   
T Consensus        32 l~s~l~~~i~~~-------~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~  104 (417)
T COG2223          32 LFSPLGVFIKSD-------FGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPS  104 (417)
T ss_pred             HHHHHHhhhccc-------cCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCc
Confidence            445555666666       8999999999999999999999999999999999999999999999999999988754   


Q ss_pred             HHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccch---hHHHHHhhHHH
Q 016882          147 FIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAG---WRYMYGASTPL  223 (381)
Q Consensus       147 ~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~---w~~~f~i~~~~  223 (381)
                      +|.+++++++.|++.+ .++....++++++|++++|.++|+.. ..++|..+...++.++.... +   |+....+..+.
T Consensus       105 ~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~-g~~~w~~~~~i~~~~  181 (417)
T COG2223         105 TWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAF-GFLAWRNVAGIYVVA  181 (417)
T ss_pred             hHHHHHHHHHHhcccc-eehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHH
Confidence            5599999999999755 77888899999999999999999999 88999999999998888877 6   99999999888


Q ss_pred             HHHHHHHHh-hcccchhHHHHhhccccCcchhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhhccccccccchhhcc
Q 016882          224 AVIMGMGMW-WLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFH  302 (381)
Q Consensus       224 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (381)
                      .++..+..+ .+.|.|......                                             ++..+..++.+++
T Consensus       182 l~v~~v~~~~~~~d~p~~r~~~---------------------------------------------~~~~~~~~~~v~~  216 (417)
T COG2223         182 LAIAAVLAWLGMNDVPEHRASV---------------------------------------------KPQLPAQLKAVFS  216 (417)
T ss_pred             HHHHHHHHHHHhCCChhhhccc---------------------------------------------cccchhHHHHHhc
Confidence            888655554 466655420000                                             0000133455565


Q ss_pred             ccchHHHHHHHHHHHHHHhhchhHHHhcHHHHHHHc-CCCCCchhHHHHHHHHHHHHHHhHHHHHH
Q 016882          303 GKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSA-GFSAASDATRVSILLGLFKVGSCTLFFMS  367 (381)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~~~~~~~  367 (381)
                      +++.|.+    .+..+.++.++..++.+.|.++++. |. +..++........+.+.+...++-..
T Consensus       217 ~~~~W~l----sllY~~tFG~Fvgfs~~l~~~~~~~fg~-~~~~Ag~~a~~f~~~g~l~Rp~GG~L  277 (417)
T COG2223         217 NKDTWLL----SLLYFATFGGFVGFSAYLPMYLVTQFGL-SPVTAGLIAFLFPLIGALARPLGGWL  277 (417)
T ss_pred             CcchHHH----HHHHHHHHHHHHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHHHHHHHhccchh
Confidence            5544443    3334556677888999999998765 88 66777777777777666666665543

>PTZ00207 hypothetical protein; Provisional

Probab=99.81  E-value=7.3e-18  Score=162.76  Aligned_cols=153  Identities=18%  Similarity=0.179  Sum_probs=126.5

Q ss_pred             cccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHh------ch
Q 016882           73 CATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALA------PD  146 (381)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~------~~  146 (381)
                      ...+.+.++       +|++..+.+++.++. ....+++++.|++.||+|||+++.++.+++.++.++++++      ++
T Consensus        48 v~s~~L~~~-------lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s  119 (591)
T PTZ00207         48 LISGAMQAR-------YNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGS  119 (591)
T ss_pred             HHHHHHHHH-------hCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCc
Confidence            345566666       899999999998874 4556778889999999999999999999999999999987      68


Q ss_pred             HHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHH
Q 016882          147 FIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVI  226 (381)
Q Consensus       147 ~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~  226 (381)
                      ++.+++.|++.|+|.+...+.....+.+++| ++||++.|+...+.++|..+.+.+...+...  +|+..|++.+++.++
T Consensus       120 ~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~--~~~~~fl~l~vl~~v  196 (591)
T PTZ00207        120 VVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSD--NTSAYFFFLMSFALV  196 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHH
Confidence            9999999999999999888888999999997 7899999999999999998655555544442  788888888888777


Q ss_pred             HHHHH-hhccc
Q 016882          227 MGMGM-WWLPA  236 (381)
Q Consensus       227 ~~~~~-~~~~~  236 (381)
                      ..++. +++++
T Consensus       197 v~ll~~~~vr~  207 (591)
T PTZ00207        197 VGILAIVFMRL  207 (591)
T ss_pred             HHHHHHhheeC
Confidence            54443 44433

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.81  E-value=3.9e-17  Score=144.13  Aligned_cols=245  Identities=23%  Similarity=0.199  Sum_probs=201.1

Q ss_pred             HHhhhcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 016882           60 GGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGAL  139 (381)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~  139 (381)
                      ..+.---..+..++.++++.++       +|+|.+..|+++++..+...+.+++..+++.|+|.++.+..++++..++.+
T Consensus        20 ia~NLR~~itsvgPLL~~Ir~~-------~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~   92 (395)
T COG2807          20 IAFNLRPAITSVGPLLDEIRQD-------LGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGIL   92 (395)
T ss_pred             HHhccchhhhhhhhhHHHHHHH-------hcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            3344455577888999999988       899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHh
Q 016882          140 VTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGA  219 (381)
Q Consensus       140 ~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i  219 (381)
                      +-... +...++.+-.+.|.|.+...+..+..+.+.|| |+-+..++++....++|..+++.+..++.++.++||....+
T Consensus        93 iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~  170 (395)
T COG2807          93 IRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGF  170 (395)
T ss_pred             HHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHH
Confidence            98887 77888999999999999999999999999999 55699999999999999999999999999887789999999


Q ss_pred             hHHHHHHHHHHHhhcccchhHHHHhhccccCcchhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhhccccccccchh
Q 016882          220 STPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLRE  299 (381)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (381)
                      .+.++++.++.++.  ...|..   .                                          .+.+.+..+...
T Consensus       171 WAl~allAl~~WlP--q~~r~~---~------------------------------------------~~~~~~~~~~~~  203 (395)
T COG2807         171 WALLALLALLIWLP--QALREQ---A------------------------------------------ASIATKLVSVRK  203 (395)
T ss_pred             HHHHHHHHHHHHhh--hccccc---c------------------------------------------cccccccccccc
Confidence            99998887776653  321100   0                                          001222333456


Q ss_pred             hccccchHHHHHHHHHHHHHHhhchhHHHhcHHHHHHHcCCCCCchhHHHHHHHHHHHHHHhHHHH
Q 016882          300 VFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKVGSCTLFF  365 (381)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~  365 (381)
                      +++++.-|.+.+.+.    .+...++....|+|.++.+.|+ +.+++....++..+.++..+++.-
T Consensus       204 vw~~~~aW~vtLfmG----lqS~~~Y~~~~WLP~ili~~G~-sa~~aG~llsl~~l~~~~~~ll~P  264 (395)
T COG2807         204 VWRSPLAWQVTLFMG----LQSLLYYIVIGWLPAILIDRGL-SAAEAGSLLSLMQLAQLPTALLIP  264 (395)
T ss_pred             cccCchhHHHHHHHH----hhHHHHHHHHHHHHHHHHHcCC-CHHHhhhHHHHHHHHHHHHHHHHH
Confidence            788865555544444    4444578889999999999999 888888888888888888887744

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.81  E-value=9.2e-18  Score=162.06  Aligned_cols=168  Identities=19%  Similarity=0.183  Sum_probs=138.2

Q ss_pred             hhhcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-----chHHH-HHHHHHHHH
Q 016882           62 LLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADIL-----GRRRE-LILAALLYL  135 (381)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----Grk~~-l~~~~~~~~  135 (381)
                      +..++.....+..+|...++       .|.+.++.+.+ +.....+ ++++++|+++||+     |||+. +.++.++.+
T Consensus        22 ~~~gl~~~~~~~~l~~~l~~-------~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~   92 (491)
T PRK11010         22 FASGLPLALTSGTLQAWMTV-------ENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLL   92 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-------CCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHH
Confidence            45566666777777877776       68999999997 3333333 6899999999999     99885 667777777


Q ss_pred             HHHHHHHHh---chHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccch
Q 016882          136 VGALVTALA---PDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAG  212 (381)
Q Consensus       136 ~~~~~~~~~---~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~  212 (381)
                      ++...+++.   ++++.+.+.+++.|++.+...+...+++.|++|+++|+++.++...++.+|.++++.++..+.+...|
T Consensus        93 ~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~G  172 (491)
T PRK11010         93 VAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLG  172 (491)
T ss_pred             HHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            777777664   47888999999999999999999999999999999999999999999999999999999999884349


Q ss_pred             hHHHHHhhHHHHHHHHHHHhhcccch
Q 016882          213 WRYMYGASTPLAVIMGMGMWWLPASP  238 (381)
Q Consensus       213 w~~~f~i~~~~~~~~~~~~~~~~~~~  238 (381)
                      ||..|++.+++.++..+..++.||++
T Consensus       173 Wr~~f~i~a~l~ll~~l~~~~~~e~~  198 (491)
T PRK11010        173 WQGMYWLMAALLIPCIIATLLAPEPT  198 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            99999999988777766666677754

>PRK10054 putative transporter; Provisional

Probab=99.80  E-value=4.9e-18  Score=159.84  Aligned_cols=147  Identities=18%  Similarity=0.207  Sum_probs=131.9

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA  168 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~  168 (381)
                      +|++..+.|++.+++.++..+++++.|+++||+|||++++++.++.+++.++.++.++++.++++|.+.|.+.+...+..
T Consensus        38 ~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  117 (395)
T PRK10054         38 YSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVL  117 (395)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999998888788888


Q ss_pred             HHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHH-hhcccc
Q 016882          169 PMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGM-WWLPAS  237 (381)
Q Consensus       169 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~-~~~~~~  237 (381)
                      ..+..|..|+++|++++++.....++|..++|.+++.+.+ . +|+..|++.+++.++.++.. +++|++
T Consensus       118 ~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~-g~~~~f~~~~~~~~i~~i~~~~~~~~~  185 (395)
T PRK10054        118 KAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-Q-SINLPFWLAAICSAFPLVFIQIWVQRS  185 (395)
T ss_pred             HHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-ccCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999875 4 89999998888877754433 335543

>TIGR00901 2A0125 AmpG-related permease

Probab=99.79  E-value=1.8e-17  Score=153.94  Aligned_cols=159  Identities=16%  Similarity=0.108  Sum_probs=129.0

Q ss_pred             cccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-----chHHH-HHHHHHHHHHHHHHHH
Q 016882           69 GSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADIL-----GRRRE-LILAALLYLVGALVTA  142 (381)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----Grk~~-l~~~~~~~~~~~~~~~  142 (381)
                      ...++..|.+.++       +|+|.++.+++.++ .+...+ .+++|++.||+     ||||. ++.+.++.++.....+
T Consensus         5 ~~~~~~~~~~~~~-------~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~   75 (356)
T TIGR00901         5 GLVGNTLPYWLRS-------KNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILS   75 (356)
T ss_pred             hhHHhHHHHHHHH-------cCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence            3445566777776       79999999999766 455554 99999999998     89887 4567777777766666


Q ss_pred             Hh---chHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccch-------
Q 016882          143 LA---PDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAG-------  212 (381)
Q Consensus       143 ~~---~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~-------  212 (381)
                      +.   .+++.+.+..++.+++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+.+.. +       
T Consensus        76 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~-g~~~~~~~  154 (356)
T TIGR00901        76 FLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPE-FANTGLIT  154 (356)
T ss_pred             cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhc-cccccccc
Confidence            66   466777788888888888889999999999999999999999999999999999999999988776 5       


Q ss_pred             -hHHHHHhhHHHHHHHHHHHhh-cccc
Q 016882          213 -WRYMYGASTPLAVIMGMGMWW-LPAS  237 (381)
Q Consensus       213 -w~~~f~i~~~~~~~~~~~~~~-~~~~  237 (381)
                       ||..|++.+++.++.++..++ .||+
T Consensus       155 ~wr~~f~i~ai~~l~~~~~~~~~~~e~  181 (356)
T TIGR00901       155 LWGYIFFWTALLILPGLLVTLFLAKEP  181 (356)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhccCC
Confidence             999999999887776555444 4553

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.79  E-value=2.7e-17  Score=155.26  Aligned_cols=171  Identities=20%  Similarity=0.176  Sum_probs=143.8

Q ss_pred             HHHhhhcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-----chHH-HHHHHHH
Q 016882           59 LGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADIL-----GRRR-ELILAAL  132 (381)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----Grk~-~l~~~~~  132 (381)
                      ..++.+++..+.....+|.+.++       .|++.+++|++..+...  .+.++++|+++||+     |||| .+.++.+
T Consensus         6 ~l~~~~~~~~~~~~~~~~~~l~~-------~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~   76 (402)
T PRK11902          6 LLGFASGLPLALTSGTLQAWMTV-------EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQV   76 (402)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHH
Confidence            34567777778888888888877       69999999999777765  59999999999999     8765 6888888


Q ss_pred             HHHHHHHHHHHh---chHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcc
Q 016882          133 LYLVGALVTALA---PDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDL  209 (381)
Q Consensus       133 ~~~~~~~~~~~~---~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  209 (381)
                      +.+++..+.++.   .+++.+++..++.+++.+...+...+++.|++|+++|+++.++...+..+|..+++.++..+.+.
T Consensus        77 ~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~  156 (402)
T PRK11902         77 GLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADR  156 (402)
T ss_pred             HHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence            887777777776   35788888888888888888999999999999999999999999999999999999999998885


Q ss_pred             cchhHHHHHhhHHHHHHHHHHHhhcccch
Q 016882          210 VAGWRYMYGASTPLAVIMGMGMWWLPASP  238 (381)
Q Consensus       210 ~~~w~~~f~i~~~~~~~~~~~~~~~~~~~  238 (381)
                      ..|||..|++.+++.++..+..++.||++
T Consensus       157 ~~gw~~~f~i~a~~~l~~~l~~~~~~e~~  185 (402)
T PRK11902        157 VLGWGNTYLLMAGLMLAGALTTLWAPEPE  185 (402)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            44999999999888776655556667654

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.79  E-value=3.7e-18  Score=150.98  Aligned_cols=147  Identities=24%  Similarity=0.264  Sum_probs=121.9

Q ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHHH
Q 016882           90 DLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAP  169 (381)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~  169 (381)
                      +.+....|.+.+.+.++..+.++.+|.++||+|||++++++.+..++...+.+.+.|+..++++|++.|+..| .....-
T Consensus        64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kg-nl~v~r  142 (451)
T KOG2615|consen   64 GASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKG-NLSVIR  142 (451)
T ss_pred             cccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-chHHHH
Confidence            4566788999999999999999999999999999999999999999999999999999777778999999988 556678


Q ss_pred             HHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhc---ccchhHHHH--HhhHHHHHH-HHHHHhhcccc
Q 016882          170 MYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVD---LVAGWRYMY--GASTPLAVI-MGMGMWWLPAS  237 (381)
Q Consensus       170 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~---~~~~w~~~f--~i~~~~~~~-~~~~~~~~~~~  237 (381)
                      ++++|.+++++|+.+++.....+++|..+||++++.+.+   ..+.+..++  ++..++... .....+++||+
T Consensus       143 AiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpET  216 (451)
T KOG2615|consen  143 AIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPET  216 (451)
T ss_pred             HHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            999999999999999999999999999999999999987   222222222  222222222 34456678998

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.79  E-value=2e-17  Score=155.11  Aligned_cols=245  Identities=12%  Similarity=0.041  Sum_probs=166.2

Q ss_pred             HHHhhhcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHH----HHHHHHH
Q 016882           59 LGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRREL----ILAALLY  134 (381)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l----~~~~~~~  134 (381)
                      +.++.+.+..+...+.+|.+.++       +|.|..++|++.+++.+...++++++|+++||+||+...    .++..+.
T Consensus        11 ~~~~~~~~~~~~~~p~l~~~l~~-------~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~   83 (382)
T TIGR00902        11 LGFFGYFCAYGIFLPFFPAWLKG-------IGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIF   83 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence            34455555667777888888877       899999999999999999999999999999999985433    2222222


Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhH
Q 016882          135 LVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWR  214 (381)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~  214 (381)
                      .+  ..+..+++++.+++.|.+.|.+.+...+...++..++  .++|++..+....+.++|.+++|++++.+.+.. |||
T Consensus        84 ~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~-g~~  158 (382)
T TIGR00902        84 AA--AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMF-DEQ  158 (382)
T ss_pred             HH--HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHc-Chh
Confidence            21  2344678899999999999998888888888887665  478899999999999999999999999999987 999


Q ss_pred             HHHHhhHHHHHHHHHHHhhcccchhHHHHhhccccCcchhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhhcccccc
Q 016882          215 YMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKE  294 (381)
Q Consensus       215 ~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (381)
                      ..|++.++..++.++ .+..+++++.        +++     ++             +                ++..+.
T Consensus       159 ~~f~~~~~~~~~~~~-~~~~~~~~~~--------~~~-----~~-------------~----------------~~~~~~  195 (382)
T TIGR00902       159 NILAILTAGLAFMLI-GFLIKPTIPP--------KDA-----IP-------------E----------------DESQGD  195 (382)
T ss_pred             HHHHHHHHHHHHHHH-HHHcCCCCCC--------Ccc-----cc-------------c----------------cccccc
Confidence            999887665333333 3333332110        000     00             0                000112


Q ss_pred             ccchhhccccchHHHHHHHHHHHHHHhhchhHHHhcHHHHHHHcCCCCCchhHHHHHHHHHHHHHHhHH
Q 016882          295 VSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKVGSCTL  363 (381)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~  363 (381)
                      .+.++++++|..+...+...+..    .....+..|.|.++++.|. +.........+..+..+++.++
T Consensus       196 ~~~~~~l~~~~~~~~l~~~~l~~----~~~~~~~~~~~~~l~~~g~-s~~~~g~l~~~~~~~~i~~~~~  259 (382)
T TIGR00902       196 SAFIALLKNPMNLRFLAAVCLIQ----GAHAAYYGFSAIYWQAAGI-SASATGLLWGIGVLAEIIIFAF  259 (382)
T ss_pred             hhHHHHHcChHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCC-CHhHHHHHHHHHHHHHHHHHHH
Confidence            23567777765444433333322    2244555677777788898 6566665555555555555444

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.78  E-value=2.9e-17  Score=153.99  Aligned_cols=163  Identities=17%  Similarity=0.103  Sum_probs=125.9

Q ss_pred             hhhcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchH----HHHHHHHHHHHHH
Q 016882           62 LLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRR----RELILAALLYLVG  137 (381)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk----~~l~~~~~~~~~~  137 (381)
                      +.+....+...+.+|.+.++       +|.|..+.|++.+++.++..++++++|++.||+|||    +.+.++..+.  .
T Consensus        14 ~~~~~~~g~~~p~l~~~l~~-------~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~   84 (382)
T PRK11128         14 FGYFFAYGVFLPFWSVWLKG-------QGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--A   84 (382)
T ss_pred             HHHHHHHHHHhhhHHHHHHh-------cCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--H
Confidence            33344456667777777776       799999999999999999999999999999999984    3332222221  2


Q ss_pred             HHHHHHhchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHH
Q 016882          138 ALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMY  217 (381)
Q Consensus       138 ~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f  217 (381)
                      .......+++|.+++.|++.|++.+...+...+++.++  .++|++..+.......+|.++||++++.+.++. |||..|
T Consensus        85 ~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~-g~~~~f  161 (382)
T PRK11128         85 VAFWFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWF-GEQAIL  161 (382)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHc-ChhHHH
Confidence            22233457899999999999999988888888888877  356888888898889999999999999999987 999999


Q ss_pred             HhhHHHHHHHHHHHhhccc
Q 016882          218 GASTPLAVIMGMGMWWLPA  236 (381)
Q Consensus       218 ~i~~~~~~~~~~~~~~~~~  236 (381)
                      ++.++..++.++..++.||
T Consensus       162 ~~~~~~~~~~~~~~~~~~~  180 (382)
T PRK11128        162 WILTAGVASMLLGQLLRPT  180 (382)
T ss_pred             HHHHHHHHHHHHHHHccCC
Confidence            8887655544443333444

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.77  E-value=2.7e-17  Score=159.14  Aligned_cols=176  Identities=16%  Similarity=0.026  Sum_probs=138.2

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH---HHHhchHHHHHHHHHHHHHHHhhHh
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALV---TALAPDFIIMVVGRFVFGIGIGLAM  165 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~r~l~G~~~g~~~  165 (381)
                      +|.+..+.++..+...++..++.++.|+++||+|||+.+.++.++..++.+.   ...+++...+++++++.|++.+...
T Consensus       281 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  360 (490)
T PRK10642        281 LHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFT  360 (490)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence            6888888888888899999999999999999999999988877654433322   2224467778889999998888777


Q ss_pred             HHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHhhcccchhHHHHhh
Q 016882          166 HAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCA  245 (381)
Q Consensus       166 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (381)
                      .....++.|++|++.|++++++.+....+++.++|.+.+.+.+..++|+..+++..+++++.++..+++||+|+|+.++.
T Consensus       361 g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~~~~  440 (490)
T PRK10642        361 GVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMKETANRPLKGA  440 (490)
T ss_pred             HHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccCCCCCCc
Confidence            77888899999999999999985554566678889999888876546888887777777777777778899999866432


Q ss_pred             ccccCcchhhHHHHHHHHHHHhC
Q 016882          246 MKRKGDMQDLRESAISCLCRLRG  268 (381)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~  268 (381)
                      +    +.+++++|+++.++++++
T Consensus       441 ~----~~~~~~~~a~~~l~~~~~  459 (490)
T PRK10642        441 T----PAASDIQEAKEILVEHYD  459 (490)
T ss_pred             c----ccccchhhHHHHhhcccc
Confidence            1    223467999999999873

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.76  E-value=6.2e-17  Score=172.41  Aligned_cols=148  Identities=18%  Similarity=0.134  Sum_probs=120.6

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH---HhchHHHHHHHHHHHHHHHhhHhHHH
Q 016882           92 SSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTA---LAPDFIIMVVGRFVFGIGIGLAMHAA  168 (381)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~r~l~G~~~g~~~~~~  168 (381)
                      +....+++.+++.+++.++++++|+++||+|||++++++.++.+++.++..   ..++++.++++|++.|++.+...+..
T Consensus        45 ~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~  124 (1146)
T PRK08633         45 QVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAK  124 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHH
Confidence            345679999999999999999999999999999999988876665554433   45789999999999999999999999


Q ss_pred             HHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcc--------cchhHHHHHhhHHHHH-HHHHHHhhcccchh
Q 016882          169 PMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDL--------VAGWRYMYGASTPLAV-IMGMGMWWLPASPR  239 (381)
Q Consensus       169 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~--------~~~w~~~f~i~~~~~~-~~~~~~~~~~~~~~  239 (381)
                      .+++.|++|+++|++++++...+..+|.++|+.+++++.+.        .++|++.+.+.++... +.+++.+++|++|.
T Consensus       125 ~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (1146)
T PRK08633        125 YGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPA  204 (1146)
T ss_pred             HhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCC
Confidence            99999999999999999999999999999999999999865        3245555544443333 34444555677653

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.76  E-value=4e-17  Score=173.52  Aligned_cols=228  Identities=14%  Similarity=0.030  Sum_probs=161.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHH---HHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHHH
Q 016882           93 SVEIGLITSGSLYGALIGSILAFNIADILGRRRELIL---AALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAP  169 (381)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~  169 (381)
                      ....++..+++.+.+.++++++|+++||+|||+++..   ..++..+..+.....++++.++++|+++|++.+...+...
T Consensus        51 ~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~  130 (1140)
T PRK06814         51 NALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKY  130 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHH
Confidence            3567888999999999999999999999999997533   2222233333333458999999999999999999999999


Q ss_pred             HHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHhhcccchhHHHHhhcccc
Q 016882          170 MYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRK  249 (381)
Q Consensus       170 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (381)
                      +++.+++|+++|++++++.+.+..+|.++||.+++++.... +|++.|++.+++.++.+++.+++|+++..   .    +
T Consensus       131 a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----~  202 (1140)
T PRK06814        131 SILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISG-NFVILVALLMGIAVLGWLASLFIPKTGNA---A----P  202 (1140)
T ss_pred             HhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHhhCCCCCCC---C----C
Confidence            99999999999999999999999999999999999999886 99999966666666666666667665320   0    0


Q ss_pred             CcchhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhhccccccccchhhccccchHHHHHHHHHHHHHHhhchhHHHh
Q 016882          250 GDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLY  329 (381)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (381)
                      +..                  .    .....          ++....++.+.+++.++...+..++..+.    ...+..
T Consensus       203 ~~~------------------~----~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  246 (1140)
T PRK06814        203 DLK------------------I----DRNII----------RSTITLLKYAKADKRIWLAILGISWFWLV----GAVVLS  246 (1140)
T ss_pred             CCe------------------e----ccchH----------HHHHHHHHHHhcCchHHHHHHHHHHHHHH----HHHHHH
Confidence            000                  0    00000          00012355666666555544443333322    234445


Q ss_pred             cHHHHHHH-cCCCCCchhHHHHHHHHHHHHHHhHHHH
Q 016882          330 YAASILQS-AGFSAASDATRVSILLGLFKVGSCTLFF  365 (381)
Q Consensus       330 ~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~i~~~~~~  365 (381)
                      +.|.++++ .|. +...........+++.++|.++..
T Consensus       247 ~~p~~~~~~~g~-~~~~~g~~~~~~~~g~~ig~~~~g  282 (1140)
T PRK06814        247 QLPLLAKETLGG-DENVATLFLAVFSVGVAVGSFLAS  282 (1140)
T ss_pred             HhHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHHHH
Confidence            66777665 587 667777777888888888777654

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.75  E-value=7.1e-16  Score=145.17  Aligned_cols=148  Identities=19%  Similarity=0.214  Sum_probs=114.2

Q ss_pred             ccCChhHHHHHHHHHHH-HHHHHHHHHHHHHHhhchHHHH-HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhH
Q 016882           89 YDLSSVEIGLITSGSLY-GALIGSILAFNIADILGRRREL-ILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMH  166 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~Grk~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~  166 (381)
                      +|.+.++.|++.+...+ +..++.+++++ .||+|||+.+ ..+.++..++..+.+++++++.+++.+.+.|...+...+
T Consensus        46 ~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  124 (393)
T PRK15011         46 VHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANP  124 (393)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence            89999999999876555 55666655566 9999999875 455666667777788889998887666665555556788


Q ss_pred             HHHHHHHhhCCcccch--hHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHH-Hhhcccch
Q 016882          167 AAPMYIAETAPTPMRG--QLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMG-MWWLPASP  238 (381)
Q Consensus       167 ~~~~~~~~~~~~~~r~--~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~-~~~~~~~~  238 (381)
                      ....++.++.+++.|.  ...++.+.+.++|.+++|++++.+.+.. |||..|++.++..++..+. .++.||.+
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~-gw~~~f~~~~~~~~~~~~~~~~~~~~~~  198 (393)
T PRK15011        125 QMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGF-SFTVMYLSAAVAFIVCGVMVWLFLPSMR  198 (393)
T ss_pred             HHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHhhcCccC
Confidence            8888888888766553  4457888899999999999999999877 9999999998887765544 44567654

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.72  E-value=1.1e-15  Score=144.15  Aligned_cols=142  Identities=17%  Similarity=0.147  Sum_probs=110.6

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH---Hh-----chHHHHHHHHHHHHHH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTA---LA-----PDFIIMVVGRFVFGIG  160 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~---~~-----~~~~~~~~~r~l~G~~  160 (381)
                      +|.+..+.+++.+++.++..++++++|+++||+|||+.++.+.....++.....   +.     +.+..+++.+++.|++
T Consensus        33 ~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  112 (396)
T TIGR00882        33 NGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFV  112 (396)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            799999999999999999999999999999999999999887666654433221   11     1234456678888888


Q ss_pred             HhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHhhc
Q 016882          161 IGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWL  234 (381)
Q Consensus       161 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~~~  234 (381)
                      .+...+....+..+..+  +++...+......++|.++++.+++.+.+.  +||+.|++.+++.++..+..++.
T Consensus       113 ~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~--~~~~~f~~~~~~~~~~~~~~~~~  182 (396)
T TIGR00882       113 FSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFSI--DPQIVFWLGSGFALILMLLLMFA  182 (396)
T ss_pred             hccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhcc--CchHHHHHHHHHHHHHHHHHHHh
Confidence            88888888877777543  345566777788899999999999887653  89999999988888765555443

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.71  E-value=3.5e-15  Score=143.51  Aligned_cols=146  Identities=12%  Similarity=0.119  Sum_probs=132.1

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHh-hchHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADI-LGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHA  167 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~  167 (381)
                      +|++..+.+++.+.+.++..++++++|+++|| +|||+++.++.++.+++.++.+++++++.++++|++.|+|.|...+.
T Consensus        43 lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~  122 (475)
T TIGR00924        43 LGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKAN  122 (475)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCC
Confidence            68999999999999999999999999999999 89999999999999999999999888889999999999999999999


Q ss_pred             HHHHHHhhCCccc---chhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHhhcc
Q 016882          168 APMYIAETAPTPM---RGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLP  235 (381)
Q Consensus       168 ~~~~~~~~~~~~~---r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~~~~  235 (381)
                      ..++++|++|+++   |+.+.++++.+.++|.++|+.+++.+.+.. +|++.|++.++..++.++..++.+
T Consensus       123 ~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~-g~~~~f~~~~~~~~~~~l~~~~~~  192 (475)
T TIGR00924       123 PSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENY-GYHVGFNLAAVGMVIGLLTFFAGR  192 (475)
T ss_pred             HHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHcc
Confidence            9999999998764   888999999999999999999999999887 899999998876655544444433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.71  E-value=3.3e-16  Score=150.71  Aligned_cols=146  Identities=14%  Similarity=0.133  Sum_probs=127.7

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHh-hchHHHHHHHHHHHHHHHHHHHHhchHHH-HHHHHHHHHHHHhhHhH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADI-LGRRRELILAALLYLVGALVTALAPDFII-MVVGRFVFGIGIGLAMH  166 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~Grk~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~r~l~G~~~g~~~~  166 (381)
                      +|++..+..++.+.+.....+..+++|+++|| +|||++++++.++++++.++++++.+... ++++|.++|+|.|...+
T Consensus        45 lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~  124 (489)
T PRK10207         45 LGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKA  124 (489)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccC
Confidence            89999999999999998999999999999999 99999999999999999999998876444 55899999999999999


Q ss_pred             HHHHHHHhhCCcc--cchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHhhcc
Q 016882          167 AAPMYIAETAPTP--MRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLP  235 (381)
Q Consensus       167 ~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~~~~  235 (381)
                      ...+++.|.+|++  +|+.+.++++.+.++|..++|.+++++.++. |||+.|++.++..++.++.+++.+
T Consensus       125 ~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~-gw~~~F~i~~i~~~~~~~~~~~~~  194 (489)
T PRK10207        125 NPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKF-GYSVTYNLCGAGLIIALLVYFACR  194 (489)
T ss_pred             CHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhh-ChHHHHHHHHHHHHHHHHHHHHcc
Confidence            9999999999877  4578999999999999999999999999988 999999997664444444444443

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.71  E-value=5.1e-17  Score=144.67  Aligned_cols=147  Identities=18%  Similarity=0.304  Sum_probs=138.4

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA  168 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~  168 (381)
                      ++-+..++|++.+...+...+.+++.|.+.||+|+|..+++|++++...++++++.+++++++++|.++|+|.++.....
T Consensus       101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsg  180 (464)
T KOG3764|consen  101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSG  180 (464)
T ss_pred             ccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhh
Confidence            56778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCccc-chhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHhhccc
Q 016882          169 PMYIAETAPTPM-RGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPA  236 (381)
Q Consensus       169 ~~~~~~~~~~~~-r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~~~~~  236 (381)
                      .+++++.+|.++ |++++|+...+.++|..+||++++.+.+.. |.+..|++.++++++...+.+++-|
T Consensus       181 lamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~-Gk~aPFlVL~~v~Lld~~L~l~vi~  248 (464)
T KOG3764|consen  181 LAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFA-GKSAPFLVLAIVLLLDGALQLLVIE  248 (464)
T ss_pred             HHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhc-CCcCcHHHHHHHHHHHHHHHHheeC
Confidence            999999999866 699999999999999999999999999998 9999999999999997766666433

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.68  E-value=7.6e-15  Score=139.45  Aligned_cols=143  Identities=22%  Similarity=0.182  Sum_probs=100.9

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH---hc-----hHHHHHHHHHHHHHH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTAL---AP-----DFIIMVVGRFVFGIG  160 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~---~~-----~~~~~~~~r~l~G~~  160 (381)
                      +|++..+.|++.+++.++..++++++|+++||+|||++++++..+.+++......   .+     .+....+++++.|.+
T Consensus        41 ~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (420)
T PRK09528         41 NGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFG  120 (420)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            7999999999999999999999999999999999999998876665544332211   11     111122333334433


Q ss_pred             HhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHhhcc
Q 016882          161 IGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLP  235 (381)
Q Consensus       161 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~~~~  235 (381)
                      .....+....+..+.  .++++..++.......+|..+++++++.+.+.  +|++.|++.+++.++.++..++.+
T Consensus       121 ~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~--~~~~~f~~~~~~~~~~~~~~~~~~  191 (420)
T PRK09528        121 FLAGAGAIEAYIERV--SRRSGFEYGRARMWGSLGWALCAFIAGILFNI--NPQINFWLGSGSALILLVLLFFAK  191 (420)
T ss_pred             hccchhhhhhHHHHH--HhhccccchhhHHhhhHHHHHHHHHHHHHHhc--CchHhHHHHHHHHHHHHHHHhccc
Confidence            333333333333322  24567788888888999999999999988764  899999998888777666555543

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.65  E-value=3.1e-15  Score=118.92  Aligned_cols=136  Identities=27%  Similarity=0.455  Sum_probs=121.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcc
Q 016882          100 TSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTP  179 (381)
Q Consensus       100 ~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~  179 (381)
                      .+.+.++..+++++.|++.||+|||+.+..+..+..++.++....++++.+.+.+++.|++.+...+....++.|.+|++
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   83 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE   83 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence            34567788899999999999999999999999999999888888899999999999999999999999999999999999


Q ss_pred             cchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHhh-ccc
Q 016882          180 MRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW-LPA  236 (381)
Q Consensus       180 ~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~~-~~~  236 (381)
                      +|++..++.+....+|..+++.+.+.+.+.. +|++.+++.+++.++..+..++ .||
T Consensus        84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        84 ERGVALGLMSAGIALGPLLGPPLGGVLAQFL-GWRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             hhhHHHHHHHHhHHHHHHHhHHhHHHHhccc-chHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            9999999999999999999999999998876 9999999988887776554444 444

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.63  E-value=1.4e-14  Score=140.25  Aligned_cols=143  Identities=16%  Similarity=0.128  Sum_probs=122.0

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHh-hchHHHHHHHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHHHHhhHhH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADI-LGRRRELILAALLYLVGALVTALAP-DFIIMVVGRFVFGIGIGLAMH  166 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~Grk~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~r~l~G~~~g~~~~  166 (381)
                      +|++..+.+++.+.+........+++|+++|| +|||+.+.++.++.+++..++++++ +.+.++++|++.|++.|...+
T Consensus        52 lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~  131 (500)
T PRK09584         52 LGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKA  131 (500)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccC
Confidence            79999999998888776767777899999999 5999999999999999988888864 566777889999999998888


Q ss_pred             HHHHHHHhhCCccc--chhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHh
Q 016882          167 AAPMYIAETAPTPM--RGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMW  232 (381)
Q Consensus       167 ~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~  232 (381)
                      ...+++.|++|+++  |..+.++++.+.++|..++|.+++++.+.. |||+.|++.++..++.++.++
T Consensus       132 ~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~-g~~~~F~i~~i~~~i~~i~~~  198 (500)
T PRK09584        132 NPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKY-GWSVAFALSVVGMLITVVNFA  198 (500)
T ss_pred             CHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHHHHH
Confidence            88999999998643  456788889999999999999999999887 999999998876555544433

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.63  E-value=5.4e-14  Score=131.13  Aligned_cols=274  Identities=17%  Similarity=0.150  Sum_probs=180.9

Q ss_pred             CCCCchhHHHHHHHHHHHHHHhhhccccccccccc-ccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016882           41 SPENYSVSAAILPFLFPALGGLLYGYDIGSTSCAT-ISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIAD  119 (381)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d  119 (381)
                      +++..+|+..++..+..    ++.+...+...+.. |...+      -|.+.+.+..|++.++..++.+++++.+|+.+.
T Consensus        27 ~~~~t~wrsi~l~~~~s----fl~~v~~sI~~~s~wpYl~~------lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~   96 (488)
T KOG2325|consen   27 DERKTNWRSIYLALLNS----FLVAVQFSIYLTSMWPYLQK------LDPTATATFFGLVIAASSLGHAIFSLIFGIWSN   96 (488)
T ss_pred             cccCCchHhHHHHHHHH----HHHhhhheEEEeecchhhhh------cCCCCCcchhhHHHHHHHHHHHhcchhhccccc
Confidence            34455666666654444    33333433333322 22222      014778899999999999999999999999999


Q ss_pred             hhch-HHHHHHHHHHHHHHHHHH-HHh---c-hHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHH
Q 016882          120 ILGR-RRELILAALLYLVGALVT-ALA---P-DFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIV  193 (381)
Q Consensus       120 ~~Gr-k~~l~~~~~~~~~~~~~~-~~~---~-~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  193 (381)
                      |.+. |+.++.+.++..+++++. ++.   + ..+.++++|++.|+|.| .....-+|+++-...+.|.++.+....+..
T Consensus        97 k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~-n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~v  175 (488)
T KOG2325|consen   97 KTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVG-NFAVLRAYIADASTVEDRPRAFAATSGGFV  175 (488)
T ss_pred             ccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcc-cHHHHHHHHHhccCccchHHHHHHhhhHHH
Confidence            9986 888899999999999998 442   3 57889999999999987 556779999998888999999999999999


Q ss_pred             HHHHHHHHHHHHhhccc------------chhHHHHHhhHHHHHHHHH-HHhhcccchhHHHHhhccccCcchhhHHHHH
Q 016882          194 LGMVGGYGIGSLLVDLV------------AGWRYMYGASTPLAVIMGM-GMWWLPASPRWLLLCAMKRKGDMQDLRESAI  260 (381)
Q Consensus       194 ~g~~~~~~~~~~l~~~~------------~~w~~~f~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (381)
                      +|..+||.++..+..-.            +-+..+-|+.+++.++.++ +.++++|.++....++               
T Consensus       176 lg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~---------------  240 (488)
T KOG2325|consen  176 LGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKK---------------  240 (488)
T ss_pred             HHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccc---------------
Confidence            99999998887766310            1234566777777777544 4445677654110000               


Q ss_pred             HHHHHHhCCCCCCCChhhHHHHHHhhhhccccccccchhhccccchHHHHHHHHHHHHHHhhchhHHHhcHHHHHHHcCC
Q 016882          261 SCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGF  340 (381)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  340 (381)
                                    .+++ ++++++    ++      +....+..+...++++.+.+..++.....-+.+.+.....+|+
T Consensus       241 --------------~~~~-~~~~~~----~~------~~~~~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w  295 (488)
T KOG2325|consen  241 --------------KRSV-EEEKSD----IE------KVKKPKLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGW  295 (488)
T ss_pred             --------------cccc-hhhccc----hh------hhccCChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhcc
Confidence                          0000 000000    00      0011122334445555555555555555566677777777788


Q ss_pred             CCCchhHHHHHHHHHHHHHHhHHHH
Q 016882          341 SAASDATRVSILLGLFKVGSCTLFF  365 (381)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~i~~~~~~  365 (381)
                      ++.+...+....+.+.+++..++.+
T Consensus       296 ~~~~av~~~gi~~~~~g~ls~~~~l  320 (488)
T KOG2325|consen  296 TGSEAVLYNGITLSISGILSVILLL  320 (488)
T ss_pred             ccchHHHhhhhHHHHHHHHHHHHHH
Confidence            7777777778888887777777644

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.62  E-value=1.1e-13  Score=133.41  Aligned_cols=261  Identities=19%  Similarity=0.168  Sum_probs=180.7

Q ss_pred             CchhHHHHHHHHHHHHHHhhhcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 016882           44 NYSVSAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGR  123 (381)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Gr  123 (381)
                      .+..+.+|..-++..++..++.....+.   ..+           +.-|+...+++.++..+...+.++++|.++||++|
T Consensus         9 ~~~Fr~lw~a~~iS~lG~~~~~va~~wl---v~~-----------lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~dr   74 (524)
T PF05977_consen    9 NRNFRRLWIAQLISNLGDWMQTVALAWL---VTQ-----------LTGSPLMVALVQAASTLPILLLSLFAGALADRFDR   74 (524)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHH---HHH-----------HhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            4456666666666666666555443332   211           34578899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHh-----chHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHH
Q 016882          124 RRELILAALLYLVGALVTALA-----PDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVG  198 (381)
Q Consensus       124 k~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~  198 (381)
                      |++++.+.++..+..+..++.     .+.+.+++.-++.|++.+...|...+++.|+.|+++...++++.+...++...+
T Consensus        75 rrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~i  154 (524)
T PF05977_consen   75 RRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARII  154 (524)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhc
Confidence            999999888776555444332     368899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHhhcccchhHHHHhhccccCcchhhHHHHHHHHHHHhCCCCCCCChhh
Q 016882          199 GYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTE  278 (381)
Q Consensus       199 ~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (381)
                      ||.++|.+.... |-.+.|++.++..++.++.....+..++.    +   +..     +|                    
T Consensus       155 GPalgG~Lva~~-G~~~~f~inalsfl~~i~~l~~~~~~~~~----~---~~~-----~e--------------------  201 (524)
T PF05977_consen  155 GPALGGILVAFF-GAAAAFLINALSFLISILALLRWKPPPPP----S---SLP-----RE--------------------  201 (524)
T ss_pred             cchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHccccccc----c---ccc-----hh--------------------
Confidence            999999998876 88889998888766655444444322110    0   000     00                    


Q ss_pred             HHHHHHhhhhccccccccchhhccccchHHHHHHHHHHHHHHhhchhHHHhcHHHHHHH-cCCCCCchhHHHHHHHHHHH
Q 016882          279 VDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGLFK  357 (381)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~  357 (381)
                        ..       .++-+.+++-+.+++..+..++...++.+.    ...+...+|.+.++ .|. +...-++.....+++.
T Consensus       202 --~~-------~~~l~~G~ryv~~~~~l~~~l~~~~~~~l~----~~a~~aLlPl~a~~~l~~-~a~~yGll~a~~gvGa  267 (524)
T PF05977_consen  202 --RF-------FSALREGLRYVRSSPPLRSVLLRSFLFNLF----ASAVWALLPLFARDVLGG-GASGYGLLLAAFGVGA  267 (524)
T ss_pred             --hh-------hhhHHHHHHHHhcchHHHHHHHHHHHHHHh----hhHHHHhhhHHHHHHhCC-cHHHHHHHHHHHHHHH
Confidence              00       011123344455555544443333222221    12233346777654 466 5566677778888888


Q ss_pred             HHHhHHHH
Q 016882          358 VGSCTLFF  365 (381)
Q Consensus       358 ~i~~~~~~  365 (381)
                      ++|+++.-
T Consensus       268 i~Gal~~~  275 (524)
T PF05977_consen  268 ILGALLLP  275 (524)
T ss_pred             HHHHHHHH
Confidence            88887743

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.61  E-value=2.9e-14  Score=135.74  Aligned_cols=144  Identities=16%  Similarity=0.088  Sum_probs=119.6

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-chHHHHHHHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHHHHhhHhH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADIL-GRRRELILAALLYLVGALVTALAP-DFIIMVVGRFVFGIGIGLAMH  166 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-Grk~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~r~l~G~~~g~~~~  166 (381)
                      +|++..+.+.+.+.+.....++.+++|+++||+ |||+++.++.++..++.++++... +...+.++..+.++|.|...+
T Consensus        40 lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~  119 (493)
T PRK15462         40 LKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKS  119 (493)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccc
Confidence            799999999999999999999999999999999 999999999999999887776543 223344455556667777777


Q ss_pred             HHHHHHHhhCCcc--cchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHhh
Q 016882          167 AAPMYIAETAPTP--MRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW  233 (381)
Q Consensus       167 ~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~~  233 (381)
                      ...++++|.+|++  +|.++.++.+.+.++|..++|.+++++.+.. ||++.|.+.++..++.++..++
T Consensus       120 ~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~-Gw~~~F~iaaigm~l~li~~~~  187 (493)
T PRK15462        120 NVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEY-SWAMGFGLAAVGMIAGLVIFLC  187 (493)
T ss_pred             cHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhh-ChHHHHHHHHHHHHHHHHHHHH
Confidence            7788999999875  7999999999999999999999999999887 9999999877655544444433

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.60  E-value=1.2e-13  Score=130.04  Aligned_cols=146  Identities=13%  Similarity=0.108  Sum_probs=125.2

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA  168 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~  168 (381)
                      +|.+..+.+++.+...++..++.++.|+++||+|||+.+..+.+...+........++.+.+++.+++.+++.|...+..
T Consensus       247 ~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~  326 (393)
T PRK15011        247 LHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIG  326 (393)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            68899999999888888888999999999999999998887766666555555556788888889999888888877778


Q ss_pred             HHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHhhccc
Q 016882          169 PMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPA  236 (381)
Q Consensus       169 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~~~~~  236 (381)
                      ..+..|.+|+ +|+++.++.+....+|..+++.+++.+.+.. +|+..|++.+++.++.++..++.||
T Consensus       327 ~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~  392 (393)
T PRK15011        327 MLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIW-NYHAVFWFALVMIIATLFCLLRIKD  392 (393)
T ss_pred             HHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHhhcC
Confidence            8888999985 5999999999999999999999999999887 9999999988888887777777765

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.59  E-value=5.3e-14  Score=140.16  Aligned_cols=141  Identities=18%  Similarity=0.096  Sum_probs=125.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHHHHHHHhh
Q 016882           96 IGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAET  175 (381)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~  175 (381)
                      ..+...+..++.+++.++.|+++||+|||+++++++++.++++++.++.++...+++++++.|++.++.++...++++|+
T Consensus       597 ~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl  676 (742)
T TIGR01299       597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVEL  676 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556778899999999999999999999999999999999999999988888888889999998888899999999999


Q ss_pred             CCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHhhcccch
Q 016882          176 APTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASP  238 (381)
Q Consensus       176 ~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~  238 (381)
                      +|++.|++++|+.+....+|.+++|.+++.+...  +...+|++.+++.++.+++.+++||+.
T Consensus       677 ~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~--~~~~pf~i~a~~lll~~ll~~~LPET~  737 (742)
T TIGR01299       677 YPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI--TKAAPILFASAALACGGLLALKLPDTR  737 (742)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            9999999999999999999999999999988764  456788888888777777777789874

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.59  E-value=4.2e-13  Score=126.27  Aligned_cols=174  Identities=15%  Similarity=0.007  Sum_probs=131.4

Q ss_pred             HHHHHHHhhhcccccccccccccccCCCCCCCccccCChhHHHHH--HHHHHHHHHHHHHHHH-HHHHhhchHHHHHHHH
Q 016882           55 LFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLI--TSGSLYGALIGSILAF-NIADILGRRRELILAA  131 (381)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g-~l~d~~Grk~~l~~~~  131 (381)
                      ......++..++..+...+.+|.+.++       .|.+.+++|++  .+++.+...+.+++.+ +..||+||||.+++..
T Consensus         4 ~~~~~ly~~~g~~~~~~~p~lp~~l~~-------~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~   76 (390)
T TIGR02718         4 ITLGLLYLSQGIPIGLAMDALPTLLRE-------DGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPM   76 (390)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHH
Confidence            445556688888888888999999887       79999999997  4667888888888884 4789999999876655


Q ss_pred             HHH-HHHHHHHH-H--hch-HHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHh
Q 016882          132 LLY-LVGALVTA-L--APD-FIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLL  206 (381)
Q Consensus       132 ~~~-~~~~~~~~-~--~~~-~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  206 (381)
                      .+. .++....+ +  ..+ ...++....+.++......+....+..|..++++++...+....+..+|.++++...+.+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l  156 (390)
T TIGR02718        77 QCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVL  156 (390)
T ss_pred             HHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            332 22222222 1  222 333444555566677777777888888999988889999999889999999999999898


Q ss_pred             hcccchhHHHHHhhHHHHHHHHHHHhhccc
Q 016882          207 VDLVAGWRYMYGASTPLAVIMGMGMWWLPA  236 (381)
Q Consensus       207 ~~~~~~w~~~f~i~~~~~~~~~~~~~~~~~  236 (381)
                      .+.. |||..|++.+++.++..+..+++++
T Consensus       157 ~~~~-gw~~~f~~~a~l~~~~~~~~~~~~~  185 (390)
T TIGR02718       157 FGKF-GQRPAFLLVACVPLASLVCVLWLKD  185 (390)
T ss_pred             HHHh-CHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            8887 9999999999988776665555544

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.59  E-value=1.4e-14  Score=137.68  Aligned_cols=148  Identities=14%  Similarity=0.160  Sum_probs=128.6

Q ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHHH
Q 016882           90 DLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAP  169 (381)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~  169 (381)
                      +.+..+.+++.++..++..++.+++|++.||+|||+.+.++.++.+++.++.+++++.+.+++++++.|++.+...+...
T Consensus       258 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~  337 (420)
T PRK09528        258 EQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVF  337 (420)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56677889999999999999999999999999999999999999999888888899999999999999999888888888


Q ss_pred             HHHHhhCCcccchhHHhH-HHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHh-hcccch
Q 016882          170 MYIAETAPTPMRGQLISL-KEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMW-WLPASP  238 (381)
Q Consensus       170 ~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~-~~~~~~  238 (381)
                      .++.|.+|++.|++..+. ++....+|..+++.+.+++.+.. ||+..|.+.+++.++..+..+ +.++++
T Consensus       338 ~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~-G~~~~f~~~~~~~~i~~~~~~~~~~~~~  407 (420)
T PRK09528        338 KYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSI-GFQGTYLILGGIVLLFTLISVFTLSGDR  407 (420)
T ss_pred             HHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhh-CchHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            999999999999988766 67788999999999999999987 899999998888776544443 444443

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.58  E-value=8.6e-14  Score=132.88  Aligned_cols=149  Identities=17%  Similarity=0.126  Sum_probs=118.7

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHh----hch-HHHHHHHHHHHHHHHHHHHHhch------HHHHHHHHHHH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADI----LGR-RRELILAALLYLVGALVTALAPD------FIIMVVGRFVF  157 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~Gr-k~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~r~l~  157 (381)
                      +|+++.+.|++.++..+..++..++.|+++||    +|| |+.++++....+++.+++...++      ...+++.+++.
T Consensus        30 ~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (437)
T TIGR00792        30 LGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYILL  109 (437)
T ss_pred             cCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHH
Confidence            79999999999999999999999999999997    677 45677788888887777766543      45667788888


Q ss_pred             HHHHhhHhHHHHHHHHhhC-CcccchhHHhHHHHHHHHHHHHHHHHHHHhhc------ccchhHHHHHhhHHHHHHHHHH
Q 016882          158 GIGIGLAMHAAPMYIAETA-PTPMRGQLISLKEFFIVLGMVGGYGIGSLLVD------LVAGWRYMYGASTPLAVIMGMG  230 (381)
Q Consensus       158 G~~~g~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~------~~~~w~~~f~i~~~~~~~~~~~  230 (381)
                      +++.+...+...++..|.. ++++|++..++.+.+..+|..+++.+.+.+..      ...+||+.+++.+++.++..+.
T Consensus       110 ~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~  189 (437)
T TIGR00792       110 GLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLII  189 (437)
T ss_pred             HHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHH
Confidence            8888887777788888887 57899999999988888888877776665552      1238999999999888776544


Q ss_pred             H-hhcccc
Q 016882          231 M-WWLPAS  237 (381)
Q Consensus       231 ~-~~~~~~  237 (381)
                      . ++.||+
T Consensus       190 ~~~~~~e~  197 (437)
T TIGR00792       190 CFFGTKER  197 (437)
T ss_pred             HHcCCEec
Confidence            4 445654

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.58  E-value=2e-13  Score=129.39  Aligned_cols=142  Identities=15%  Similarity=0.045  Sum_probs=104.9

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGR-RRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHA  167 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Gr-k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~  167 (381)
                      +|++..+.|++.+++.++..++++++|+++||+|| |+++.++.++..++..+..+.++++.+++.|++.|++.+...+.
T Consensus        33 ~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  112 (418)
T TIGR00889        33 LHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAYMPTIAL  112 (418)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHccHHHH
Confidence            79999999999999999999999999999999965 77888888888888888888899999999999999987766665


Q ss_pred             HHHHHH--------hhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHhhcccch
Q 016882          168 APMYIA--------ETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASP  238 (381)
Q Consensus       168 ~~~~~~--------~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~  238 (381)
                      ..+...        |......|.+..|      .+|.++++.+++.+... ..|+ .|++.++..++.++..+++||+|
T Consensus       113 ~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~-~~~~-~f~~~~~~~~~~~~~~~~~~e~~  183 (418)
T TIGR00889       113 TNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIE-LSNI-QLYITAGSSALLGVFALTLPDIP  183 (418)
T ss_pred             HHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhccc-chhH-HHHHHHHHHHHHHHHHhcCCCCC
Confidence            554432        2222223444444      36778888888877332 2455 35556665555555556678765

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.56  E-value=9.4e-14  Score=131.32  Aligned_cols=148  Identities=24%  Similarity=0.232  Sum_probs=127.5

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA  168 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~  168 (381)
                      .|.+..+.+++.+...++..++.++.|+++||+|||+.+..+.+...++.++..+.++.+.+.+..++.|++.++..+..
T Consensus       250 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  329 (406)
T PRK11551        250 QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVL  329 (406)
T ss_pred             CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHH
Confidence            68889999999999999999999999999999999999988777777777777777788878888888999888888888


Q ss_pred             HHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHhhccc
Q 016882          169 PMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPA  236 (381)
Q Consensus       169 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~~~~~  236 (381)
                      .+++.|.+|+++|++..++.+....+|..++|.+++.+.+..++|...+++...+.++..++.++..+
T Consensus       330 ~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (406)
T PRK11551        330 YALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLLVS  397 (406)
T ss_pred             HHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999987657777777777776666555554433

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.55  E-value=8.8e-14  Score=129.64  Aligned_cols=139  Identities=14%  Similarity=0.084  Sum_probs=122.0

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhchH--HHHHHHHHHHHHHHhhHhH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDF--IIMVVGRFVFGIGIGLAMH  166 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~r~l~G~~~g~~~~  166 (381)
                      +|.+..+.+++.+...++..+++++.|++.||+|||+.+.++.++..++.++..+.++.  ..+++..++.|++.+...+
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~  314 (377)
T TIGR00890       235 LGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTIS  314 (377)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchh
Confidence            68888899999999999999999999999999999999999988888888777766542  3345667788888888888


Q ss_pred             HHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHH
Q 016882          167 AAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMG  228 (381)
Q Consensus       167 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~  228 (381)
                      ..+.++.|.+|+++|++..++.+....+|..++|.+.+.+.+.. ||++.|++.+++.++.+
T Consensus       315 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       315 LFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEI-GFEYTFIVTGAFALTSL  375 (377)
T ss_pred             ccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhh-chhhHHHHHHHHHHHhc
Confidence            88889999999999999999999999999999999999999887 89999998888776643

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.54  E-value=4.3e-13  Score=126.57  Aligned_cols=142  Identities=20%  Similarity=0.237  Sum_probs=124.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHHHHHHHh
Q 016882           95 EIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAE  174 (381)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~  174 (381)
                      +.++..+.+.++..++.++.|++.||+|+|+.+..+..+.+++.++..+.++.+.+++.+++.|++.+...+.....+.|
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~  329 (399)
T PRK05122        250 GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVK  329 (399)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            45666778888999999999999999999999999988888888888888888888889999999999888888888889


Q ss_pred             hCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHhhcccc
Q 016882          175 TAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPAS  237 (381)
Q Consensus       175 ~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~  237 (381)
                      .+|+++|+++.++++....+|..+++.+.+.+.+.. ||++.|++.+++.++.++..++++++
T Consensus       330 ~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~  391 (399)
T PRK05122        330 RVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWF-GYPSIFLAAALAALLGLALTWLLYRR  391 (399)
T ss_pred             hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            999999999999999999999999999999998887 89999999988888776666655543

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.54  E-value=5.9e-13  Score=124.32  Aligned_cols=146  Identities=16%  Similarity=0.162  Sum_probs=125.5

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA  168 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~  168 (381)
                      +|.++.+.+++.+.......++.++.|++.||+|||+.+.++.++..+..+.....++.+.+++.+++.|++.+...+..
T Consensus       230 ~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~  309 (375)
T TIGR00899       230 LGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIG  309 (375)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            68889999998888888888899999999999999999988877766666666667788888889999999999888888


Q ss_pred             HHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHhhccc
Q 016882          169 PMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPA  236 (381)
Q Consensus       169 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~~~~~  236 (381)
                      ..++.|..|+ +++++.++++....+|..+++.+.+.+.+.. ||+..|++.+++.++..+...+++|
T Consensus       310 ~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~  375 (375)
T TIGR00899       310 MLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERW-SYHAVYWFAIVMLIVALFCLLLIKD  375 (375)
T ss_pred             HHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHheecC
Confidence            8999999985 5679999999999999999999999999887 8999999999888887776666543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.53  E-value=3e-13  Score=124.69  Aligned_cols=160  Identities=29%  Similarity=0.382  Sum_probs=141.9

Q ss_pred             ccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHH-HHHHHHHHHHHHHHHHHHhch
Q 016882           68 IGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRR-ELILAALLYLVGALVTALAPD  146 (381)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~-~l~~~~~~~~~~~~~~~~~~~  146 (381)
                      ........+.+.++.      +|.+..+.+++.+...++..++.++.+++.||+|||+ .+..+..+..++.+.....++
T Consensus       191 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  264 (352)
T cd06174         191 YYGLLTYLPLYLQEV------LGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPS  264 (352)
T ss_pred             HHHHHHHHHHHHHHh------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcc
Confidence            333444455554431      4889999999999999999999999999999999999 999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHH
Q 016882          147 FIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVI  226 (381)
Q Consensus       147 ~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~  226 (381)
                      .+.+.+..++.|++.+...+....++.|..|+++|++.+++.+....+|..+++.+.+.+.+.. +|++.+++.+++.++
T Consensus       265 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~-~~~~~~~~~~~~~~i  343 (352)
T cd06174         265 LALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTG-GYGGVFLILAALALL  343 (352)
T ss_pred             HHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcchHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999876 999999999999888


Q ss_pred             HHHHHhhc
Q 016882          227 MGMGMWWL  234 (381)
Q Consensus       227 ~~~~~~~~  234 (381)
                      ..+..+++
T Consensus       344 ~~i~~~~~  351 (352)
T cd06174         344 AALLLLLL  351 (352)
T ss_pred             HHHHheec
Confidence            76665543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.53  E-value=7.2e-16  Score=148.84  Aligned_cols=283  Identities=20%  Similarity=0.245  Sum_probs=3.0

Q ss_pred             HHHHHHhhhcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 016882           56 FPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYL  135 (381)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~  135 (381)
                      ..++..+......+.....+.++++.       |+++.++.|++.+.+-++..+..++..++.+|..|.+.+-+|.++.+
T Consensus         7 ~~~~~~~~q~~~~g~~~~~lttiErR-------F~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~   79 (539)
T PF03137_consen    7 FLCLLGLFQMMVSGYVNSSLTTIERR-------FGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMG   79 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHH
Confidence            34444455577777788888899888       99999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHh-------------------------c-------------------------hHHHHHHHHHHHHHHHhhHh
Q 016882          136 VGALVTALA-------------------------P-------------------------DFIIMVVGRFVFGIGIGLAM  165 (381)
Q Consensus       136 ~~~~~~~~~-------------------------~-------------------------~~~~~~~~r~l~G~~~g~~~  165 (381)
                      ++++++++=                         .                         -+..+++++++.|+|....+
T Consensus        80 ~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~  159 (539)
T PF03137_consen   80 LGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLY  159 (539)
T ss_dssp             ------------------------------------------------------------------------SSS-----
T ss_pred             HHHHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCc
Confidence            999887651                         0                         03567889999999999999


Q ss_pred             HHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcc---------------------cchhHHHHHhhHHHH
Q 016882          166 HAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDL---------------------VAGWRYMYGASTPLA  224 (381)
Q Consensus       166 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---------------------~~~w~~~f~i~~~~~  224 (381)
                      +...+|+-|..++++-+...|+.+....+|.++|-.+++.+.+.                     .+.|...|++.+++.
T Consensus       160 tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~  239 (539)
T PF03137_consen  160 TLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILL  239 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999877741                     234777788888888


Q ss_pred             HHHHHHHhhcccchhHHHHhhccccCcchhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhhccccccccchhhcccc
Q 016882          225 VIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGK  304 (381)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (381)
                      ++..+.++++|+.-+...+..           ++.+...+  +.++..++..++. +..+......++-....+++++| 
T Consensus       240 ~l~aipl~~FPk~lp~~~~~~-----------~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~df~~~l~~Ll~N-  304 (539)
T PF03137_consen  240 FLSAIPLFFFPKKLPGTSERQ-----------EEKESSER--KEEDSDKDSFKDP-KSKKSFGKSIKDFPKALKRLLTN-  304 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHcCCccCCCccccc-----------chhhhhhc--chhhhhhhccccc-ccccchhhhhhhHHHHHHHHhcC-
Confidence            877777777776432110000           00000000  0000000000000 00000001112223444555555 


Q ss_pred             chHHHHHHHHHHHHHHhhchhHHHhcHHHHHHHc-CCCCCchhHHHHHHHHHHHHHHhHHHHHH
Q 016882          305 CLKALIIGAGLVLFQQITGQPSVLYYAASILQSA-GFSAASDATRVSILLGLFKVGSCTLFFMS  367 (381)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~~~~~~~  367 (381)
                         +.+++..+...........+..|.|.|+|.. +. ++.   ..+.+.++..+.+..++.+.
T Consensus       305 ---p~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~-sas---~A~~l~G~v~ip~~~~G~ll  361 (539)
T PF03137_consen  305 ---PVFMCLILAGVFESFIVSGFATFLPKYLESQFGL-SAS---QASLLTGIVSIPGAALGILL  361 (539)
T ss_dssp             ----------------------------------------------------------------
T ss_pred             ---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CHH---HHHHHHhhhhcchhheehhe
Confidence               5566666666666677788999999999875 76 333   33334444444444444433

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.53  E-value=3.7e-12  Score=120.94  Aligned_cols=150  Identities=20%  Similarity=0.287  Sum_probs=117.2

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHH----hhchHHHHHHH-HHHHHHHHHHHHHhchHH---------------
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIAD----ILGRRRELILA-ALLYLVGALVTALAPDFI---------------  148 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~Grk~~l~~~-~~~~~~~~~~~~~~~~~~---------------  148 (381)
                      +|.+....+++..+..+...+.+++.|+++|    |+|||+.++++ .....++.++.+++++++               
T Consensus        34 lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~  113 (477)
T TIGR01301        34 LGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRA  113 (477)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHH
Confidence            7999999999999999999999999999999    59999998875 666666666776765542               


Q ss_pred             --HHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccc--hhHHhHHHHHHHHHHHHHHHHHHHhh--ccc------------
Q 016882          149 --IMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMR--GQLISLKEFFIVLGMVGGYGIGSLLV--DLV------------  210 (381)
Q Consensus       149 --~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~~~g~~~~~~~~~~l~--~~~------------  210 (381)
                        ..+++-.+..++.....+...++++|.+|+++|  +.+.++.+...++|..+|+.+++...  +..            
T Consensus       114 i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~  193 (477)
T TIGR01301       114 IIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSC  193 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccccccccccccc
Confidence              223333445567787888889999999998865  57899999999999999999998651  110            


Q ss_pred             chhHHHHHhhHHHHHHHHH-HHhhcccch
Q 016882          211 AGWRYMYGASTPLAVIMGM-GMWWLPASP  238 (381)
Q Consensus       211 ~~w~~~f~i~~~~~~~~~~-~~~~~~~~~  238 (381)
                      .+.|+.|++.+++.+++.+ ..++.+|.|
T Consensus       194 ~~~~~~F~i~a~~l~i~~l~t~~~v~E~~  222 (477)
T TIGR01301       194 ANLKSCFLIDIILLAILTYIALSAVKENP  222 (477)
T ss_pred             chHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence            1678999998888777554 445578865

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.53  E-value=4.3e-14  Score=136.98  Aligned_cols=275  Identities=17%  Similarity=0.242  Sum_probs=199.1

Q ss_pred             HHHHHHHHHhhhcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 016882           53 PFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAAL  132 (381)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~  132 (381)
                      .+++.++..+..++..+.+...+.++.+.       |+++.++.|++.+.+-++..+...+..++..|.-|.+.+-+|.+
T Consensus        98 fl~~l~~~~~~q~l~~~y~~s~IttiErR-------F~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~  170 (735)
T KOG3626|consen   98 FLVLLSLAAFAQGLYVGYFNSVITTIERR-------FKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLV  170 (735)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhhhh-------cCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechh
Confidence            34566666777788888888888888887       99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHh--------------------c---------------------------h----HH-HHHHHHHHHHHH
Q 016882          133 LYLVGALVTALA--------------------P---------------------------D----FI-IMVVGRFVFGIG  160 (381)
Q Consensus       133 ~~~~~~~~~~~~--------------------~---------------------------~----~~-~~~~~r~l~G~~  160 (381)
                      +++++.+++++-                    +                           +    ++ .+++++++.|+|
T Consensus       171 ~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG  250 (735)
T KOG3626|consen  171 LMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIG  250 (735)
T ss_pred             HHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcC
Confidence            999999988761                    0                           0    22 567899999999


Q ss_pred             HhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhc------------------ccchhHHHHHhhHH
Q 016882          161 IGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVD------------------LVAGWRYMYGASTP  222 (381)
Q Consensus       161 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~------------------~~~~w~~~f~i~~~  222 (381)
                      ....++...+|+-|...+++-...+|+......+|.++|-++++.+.+                  +.+-|...|++.+.
T Consensus       251 ~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~  330 (735)
T KOG3626|consen  251 ATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGA  330 (735)
T ss_pred             CCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998874                  22468888999999


Q ss_pred             HHHHHHHHHhhcccchhHHHHhhccccCcchhhHHHHHHHHHHHhCCCCC---CCChhhHHHHHHhhhhccccccccchh
Q 016882          223 LAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIG---DSAPTEVDEILTELSYVGEDKEVSLRE  299 (381)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (381)
                      +.++..+.++++|+..+...+.                ...++.+....+   .+++....+.       -++-+...+.
T Consensus       331 ~~~~~a~p~f~fPk~lp~~~~~----------------~~~~~~~~~k~~~~~~~~~~~~~~~-------ikdfp~s~~~  387 (735)
T KOG3626|consen  331 LLLFSAVPLFFFPKELPKSQKR----------------KRARDLHVLKTESGGAKSDKTFGKK-------IKDFPKSIKR  387 (735)
T ss_pred             HHHHHHHHHHhCcccCcccccc----------------chhhhhcccccccccccCCcchhhh-------HHHHHHHHHH
Confidence            9998888888888764311100                000000000000   0000000000       0111344556


Q ss_pred             hccccchHHHHHHHHHHHHHHhhchhHHHhcHHHHHHHc-CCCCCchhHHHHHHHHHHHHHHhHHHH
Q 016882          300 VFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSA-GFSAASDATRVSILLGLFKVGSCTLFF  365 (381)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~~~~~  365 (381)
                      ++++    +++++..+........+..+..|+|.|++.. |. +   +..++.+.+...+.+.-+|+
T Consensus       388 ll~N----~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~-s---as~An~l~G~i~vp~~~~Gi  446 (735)
T KOG3626|consen  388 LLSN----PIFMLVVLASVIESLAITGYITFLPKYLETQFGI-S---ASLANILTGSIGVPAAAVGI  446 (735)
T ss_pred             HhcC----chHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCC-C---HHHHHHHhhhhhhhhhhhhh
Confidence            6666    5566666666667777888999999999875 77 3   33444444444444444444

>TIGR00889 2A0110 nucleoside transporter

Probab=99.52  E-value=3.1e-13  Score=128.17  Aligned_cols=148  Identities=13%  Similarity=0.223  Sum_probs=125.7

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhc----hHHHHHHHHHHHHHHHhhHhH
Q 016882           91 LSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAP----DFIIMVVGRFVFGIGIGLAMH  166 (381)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~r~l~G~~~g~~~~  166 (381)
                      .+.+..+.+.++..++..++.++.|+++||+|||+++.++.++.+++..+.....    +++.+++.+++.|++.+...+
T Consensus       248 ~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~  327 (418)
T TIGR00889       248 FVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNI  327 (418)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence            3457789999999999999999999999999999999999999888877666632    246677889999999998888


Q ss_pred             HHHHHHHhhCCcccchhHHhHHH-HHHHHHHHHHHHHHHHhhcccc-----hhHHHHHhhHHHHHHHHH-HHhhcccch
Q 016882          167 AAPMYIAETAPTPMRGQLISLKE-FFIVLGMVGGYGIGSLLVDLVA-----GWRYMYGASTPLAVIMGM-GMWWLPASP  238 (381)
Q Consensus       167 ~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~l~~~~~-----~w~~~f~i~~~~~~~~~~-~~~~~~~~~  238 (381)
                      ....++.|++|+++|+++.++.+ ..+++|..+||.+++.+.+..+     ||+..|.+.+++.+++.+ ..+++||+.
T Consensus       328 ~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~  406 (418)
T TIGR00889       328 SGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSH  406 (418)
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            98999999999999999999997 6789999999999999998642     699999998888777544 445577663

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.51  E-value=4.7e-12  Score=115.30  Aligned_cols=269  Identities=16%  Similarity=0.113  Sum_probs=181.1

Q ss_pred             chhHHHHHHHHHHHHHHhhhcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchH
Q 016882           45 YSVSAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRR  124 (381)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk  124 (381)
                      +-.+++|..++..++.++.+++.-...++.......-       +| +.+..-|+..+|.+.+....+++.|+.||+|-|
T Consensus        38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~-------Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR  109 (480)
T KOG2563|consen   38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSF-------YG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLR  109 (480)
T ss_pred             ccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHH-------hc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchH
Confidence            3445566777888888888877766666555555443       67 788899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhc------hHH--HHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHH
Q 016882          125 RELILAALLYLVGALVTALAP------DFI--IMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGM  196 (381)
Q Consensus       125 ~~l~~~~~~~~~~~~~~~~~~------~~~--~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~  196 (381)
                      ..++++..+.+++..+-..+.      .++  ....++.+.+..+-.....-.-...-|||+++|..+..+-.++..+|.
T Consensus       110 ~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGv  189 (480)
T KOG2563|consen  110 TALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGV  189 (480)
T ss_pred             HHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHH
Confidence            999999999999998877652      344  777888888888776666656666779999999999999999999999


Q ss_pred             HHHHHHHHHhhccc-----chhHH--HHHhhHHHHHHHHHHH-hhcccchhHHHHhhccccCcchhhHHHHHHHHHHHhC
Q 016882          197 VGGYGIGSLLVDLV-----AGWRY--MYGASTPLAVIMGMGM-WWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRG  268 (381)
Q Consensus       197 ~~~~~~~~~l~~~~-----~~w~~--~f~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (381)
                      +++.++...+.++.     ..|..  .|+....+..+.+++. +..++.|+..-              ..+.+       
T Consensus       190 avg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPp--------------s~s~~-------  248 (480)
T KOG2563|consen  190 AVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPP--------------SASQA-------  248 (480)
T ss_pred             HHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC--------------chhHh-------
Confidence            99999988888543     24554  3443444433333322 22344332100              00000       


Q ss_pred             CCCCCCChhhHHHHHHhhhhccccccccchhhccccchHHHHHHHHHHHHHHhhchhHHHhcHHHHHHHcCCCCCchhHH
Q 016882          269 QSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATR  348 (381)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  348 (381)
                                  .      ..+.+-..+.+++++++.+-.+.+++..    .+..++...+.+...+.-.|+ +...++.
T Consensus       249 ------------~------~~~~~f~~si~~~~~n~~F~il~~~ygi----~~g~F~~l~~~l~~~l~~sgY-~~~~aG~  305 (480)
T KOG2563|consen  249 ------------A------LQDASFPKSIKSCFKNRQFIILAICYGI----GLGLFNSLSTLLNLALCPSGY-EGVFAGY  305 (480)
T ss_pred             ------------h------hhcCcHHHHHHHHHcCccHHHHHHHHhh----hHHHHHHHHHHhhhccccccC-Cccccch
Confidence                        0      0011234556777777543333332222    233344454444444455678 5578888


Q ss_pred             HHHHHHHHHHHHhHHHH
Q 016882          349 VSILLGLFKVGSCTLFF  365 (381)
Q Consensus       349 ~~~~~~~~~~i~~~~~~  365 (381)
                      +..+..+.++++.++..
T Consensus       306 ig~l~iv~Gmlga~~~g  322 (480)
T KOG2563|consen  306 IGALMIVAGMLGALASG  322 (480)
T ss_pred             hHHHHHHHHHHHHHHHH
Confidence            88888888888887754

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.50  E-value=1.6e-12  Score=121.87  Aligned_cols=142  Identities=13%  Similarity=0.043  Sum_probs=128.0

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA  168 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~  168 (381)
                      +|.+..+.|++.++..++.+++.++.+++.||+|+|+.+.++.++.++..++.+++++.+.+++.+.+.|++.+...+..
T Consensus       235 ~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~  314 (382)
T TIGR00902       235 AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAA  314 (382)
T ss_pred             CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCcccchhHHhHHH-HHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHhh
Q 016882          169 PMYIAETAPTPMRGQLISLKE-FFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW  233 (381)
Q Consensus       169 ~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~~  233 (381)
                      ..++.+. |+++|++..++++ ...++|.++++.++|.+.+.. |+ ..|++.+++.++.+++.+.
T Consensus       315 ~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~-g~-~~~~~~~~~~~~~~~~~~~  377 (382)
T TIGR00902       315 MRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTL-GA-GTFVFMAIIAAAAFFLIPK  377 (382)
T ss_pred             HHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cH-HHHHHHHHHHHHHHHHHHh
Confidence            9999998 9999999999986 578899999999999999988 76 6677777777665544443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.50  E-value=5.3e-13  Score=127.99  Aligned_cols=142  Identities=18%  Similarity=0.192  Sum_probs=120.1

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHh--hchHHHHHH--HHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADI--LGRRRELIL--AALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLA  164 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~--~Grk~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~  164 (381)
                      +|.+..+.+++.++..++..+++++.|+++||  +++|+...+  +.++.+++.+++...++++.+++.+++.|++.+..
T Consensus       271 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~  350 (455)
T TIGR00892       271 KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSV  350 (455)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchH
Confidence            68899999999999999999999999999997  334433333  34444455556667788998999999999999999


Q ss_pred             hHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHH
Q 016882          165 MHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMG  230 (381)
Q Consensus       165 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~  230 (381)
                      .+...+++.|.+|++++++.+++++....+|..++|.+++.+.+..++|++.|++.+++.++..+.
T Consensus       351 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~  416 (455)
T TIGR00892       351 GALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLF  416 (455)
T ss_pred             HHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence            999999999999999999999999999999999999999999987757999999998887665443

>PRK12382 putative transporter; Provisional

Probab=99.49  E-value=1.4e-12  Score=122.74  Aligned_cols=137  Identities=19%  Similarity=0.191  Sum_probs=121.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHHHHHHHhh
Q 016882           96 IGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAET  175 (381)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~  175 (381)
                      .++..+.+.++..+++++.|++.||+|+|+.+..+..+.+++.++..+.++.+.++++.++.|++.+...+.....+.|.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~  330 (392)
T PRK12382        251 AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKR  330 (392)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence            45666778888899999999999999999999999988888888888888888888899999999998888888889999


Q ss_pred             CCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHhh
Q 016882          176 APTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW  233 (381)
Q Consensus       176 ~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~~  233 (381)
                      +|+++|++..++.+....+|..++|.+.+.+.+.. ||++.|++.+++.++..+..++
T Consensus       331 ~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~-g~~~~~~~~~~~~~~~~~~~~~  387 (392)
T PRK12382        331 VPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSF-GYPSVFLAGAISAVLGIIVTIL  387 (392)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999987 9999999999888776555443

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.48  E-value=1.3e-12  Score=125.98  Aligned_cols=144  Identities=21%  Similarity=0.111  Sum_probs=112.7

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH--HHHHhchHHHHHHHHHHHHHHHhhHhH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGAL--VTALAPDFIIMVVGRFVFGIGIGLAMH  166 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~r~l~G~~~g~~~~  166 (381)
                      +|++..+.++..++..++..++.+++|+++||+|||+.+.....+..++..  +....++.+.+.+++++.|++......
T Consensus       289 ~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~  368 (467)
T PRK09556        289 LGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQL  368 (467)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHH
Confidence            799999999999999999999999999999999999887665444443322  222345666677788888865444444


Q ss_pred             HHHHHHHhhCCcccchhHHhHHHHHHHH-HHHHHHHHHHHhhc------------ccchhHHHHHhhHHHHHHHHHHHhh
Q 016882          167 AAPMYIAETAPTPMRGQLISLKEFFIVL-GMVGGYGIGSLLVD------------LVAGWRYMYGASTPLAVIMGMGMWW  233 (381)
Q Consensus       167 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~l~~------------~~~~w~~~f~i~~~~~~~~~~~~~~  233 (381)
                      .......|.+|++.||++.|+.+....+ |..++|.+.|.+.+            .. +|+..|++.+++.++.++..++
T Consensus       369 ~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~-~~~~~f~~~~~~~~~~~~~~~~  447 (467)
T PRK09556        369 LIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLT-GWAGTFAALDIAAIGCICLMAI  447 (467)
T ss_pred             HHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhccccccccccccccc-ChHHHHHHHHHHHHHHHHHHHH
Confidence            4446677999999999999999988886 77999999999998            44 7999999887777776555554

>PRK09952 shikimate transporter; Provisional

Probab=99.46  E-value=3.5e-12  Score=121.84  Aligned_cols=149  Identities=17%  Similarity=0.038  Sum_probs=115.1

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH---h-chHHHHHHHHHHHHHHHhhH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTAL---A-PDFIIMVVGRFVFGIGIGLA  164 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~---~-~~~~~~~~~r~l~G~~~g~~  164 (381)
                      +|.+......+..+..+...++.++.|+++||+|||+.+..+.++..++.+....   . ++.+.++++.++.|++.+..
T Consensus       281 ~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  360 (438)
T PRK09952        281 LGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMV  360 (438)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHH
Confidence            6777776666666677777889999999999999999988887766554433322   1 23445555667778888888


Q ss_pred             hHHHHHHHHhhCCcccchhHHhHHH-HHHHHHHHHHHHHHHHhhccc-chhHHHHHhhHHHHHHHHHHHhhcccc
Q 016882          165 MHAAPMYIAETAPTPMRGQLISLKE-FFIVLGMVGGYGIGSLLVDLV-AGWRYMYGASTPLAVIMGMGMWWLPAS  237 (381)
Q Consensus       165 ~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~l~~~~-~~w~~~f~i~~~~~~~~~~~~~~~~~~  237 (381)
                      .+...+++.|.+|.+.|+++.++.+ .+..+|+.++|.+.+++.+.. ++|+..+.+.+++.++..+..+.++|+
T Consensus       361 ~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~  435 (438)
T PRK09952        361 VCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDN  435 (438)
T ss_pred             HHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence            8888999999999999999999954 455689999999999998743 368998888888888777776667664

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.45  E-value=1.9e-12  Score=121.20  Aligned_cols=143  Identities=21%  Similarity=0.147  Sum_probs=106.8

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHH--HHH------HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRR--ELI------LAALLYLVGALVTALAPDFIIMVVGRFVFGIG  160 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~--~l~------~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~  160 (381)
                      +|.+..+.+++.+...++..++.++.|++.||+|||+  ...      ++.++..+........++.+.......+.+.+
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (399)
T TIGR00893       246 RGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFG  325 (399)
T ss_pred             hcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhc
Confidence            6888999999999999999999999999999999996  111      11111111111111122444444444444444


Q ss_pred             HhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHh
Q 016882          161 IGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMW  232 (381)
Q Consensus       161 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~  232 (381)
                      .+ ..+...+++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..++|+..|++.+++.++..+..+
T Consensus       326 ~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  396 (399)
T TIGR00893       326 LG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL  396 (399)
T ss_pred             hh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence            44 788889999999999999999999999999999999999999999873399999988888777655443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.45  E-value=1.3e-12  Score=123.50  Aligned_cols=138  Identities=18%  Similarity=0.272  Sum_probs=122.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHHHHHHHh
Q 016882           95 EIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAE  174 (381)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~  174 (381)
                      ..+.+.++..++..++.+..|++.||+|||+.+..+..+..++.+...+.++.+.+++.+++.|++.+...+...+++.+
T Consensus       259 ~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  338 (408)
T PRK09874        259 ISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVY  338 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHH
Confidence            35666777888889999999999999999999999988888877777777888888899999999999999999999999


Q ss_pred             hCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHhh
Q 016882          175 TAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW  233 (381)
Q Consensus       175 ~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~~  233 (381)
                      ..|+++|++.+++.+....+|..+||.+++.+.+.. ||++.|++.+++.++..+..++
T Consensus       339 ~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~-g~~~~f~~~~~~~l~~~~~~~~  396 (408)
T PRK09874        339 NSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANY-GFRAVFLVTAGVVLFNAVYSWN  396 (408)
T ss_pred             hCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhc-chhHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999887 8999999999888876655543

>PRK03699 putative transporter; Provisional

Probab=99.44  E-value=3.5e-12  Score=120.18  Aligned_cols=146  Identities=14%  Similarity=0.056  Sum_probs=124.1

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA  168 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~  168 (381)
                      +|++..+.+++.+.+.++..++.++.|+++||++||+.+.....+..+...+....++.+.+.+..++.|++.+...+..
T Consensus       236 ~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~  315 (394)
T PRK03699        236 FGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTI  315 (394)
T ss_pred             cCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999988877777766666667777777777888999888888888


Q ss_pred             HHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHhhccc
Q 016882          169 PMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPA  236 (381)
Q Consensus       169 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~~~~~  236 (381)
                      .++..+..| ++++...+.......+|..++|.+.+.+.+.. ||+..+++.+++.+++.+..+..++
T Consensus       316 ~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~  381 (394)
T PRK03699        316 ITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHF-GLQAALLTANGLYAVVFVMCILLGF  381 (394)
T ss_pred             HHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHh-CchhhhhhhHHHHHHHHHHHHHHHH
Confidence            888888776 45678888888889999999999999999987 8999999888888777665555544

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.43  E-value=3.3e-13  Score=115.17  Aligned_cols=154  Identities=19%  Similarity=0.222  Sum_probs=128.5

Q ss_pred             HHHHHHHHHHHHHhhhcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHh-hchHHHH
Q 016882           49 AAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADI-LGRRREL  127 (381)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~Grk~~l  127 (381)
                      ++...++..|+..+-.++.....+....+...+       .+++..+..++.+++..-..+.++++|++.|| +|-|..-
T Consensus        41 hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d-------~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gt  113 (459)
T KOG4686|consen   41 HRFMALVFMCLLGFGSYFCYDAPGALQIDFKLD-------SNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGT  113 (459)
T ss_pred             hHHHHHHHHHHhcccceeecCCchhhhhhhhcc-------cccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHH
Confidence            344555677777777788877777777777776       68888899999999999999999999999996 6877776


Q ss_pred             HHHHHHHHHHHHHHHH---hchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHH
Q 016882          128 ILAALLYLVGALVTAL---APDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGS  204 (381)
Q Consensus       128 ~~~~~~~~~~~~~~~~---~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  204 (381)
                      ++-..+..++.++++.   .+.+|.+..+|++.|+|.-..-++.+.|..-|+..|+.+.++|+......+|+.+--.+.+
T Consensus       114 ii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~  193 (459)
T KOG4686|consen  114 IILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMP  193 (459)
T ss_pred             HHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecH
Confidence            6666666777777654   5789999999999999988888888999999999999999999999999999988777777


Q ss_pred             Hhhcc
Q 016882          205 LLVDL  209 (381)
Q Consensus       205 ~l~~~  209 (381)
                      ++.+.
T Consensus       194 ~ly~~  198 (459)
T KOG4686|consen  194 FLYDT  198 (459)
T ss_pred             HHHHH
Confidence            77654

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.43  E-value=4e-12  Score=121.94  Aligned_cols=144  Identities=17%  Similarity=0.149  Sum_probs=102.9

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh--chHHHH-HHHHHHHHHHHHHHHH--hchHHHHHHHHHHHHHHHhh
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADIL--GRRREL-ILAALLYLVGALVTAL--APDFIIMVVGRFVFGIGIGL  163 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--Grk~~l-~~~~~~~~~~~~~~~~--~~~~~~~~~~r~l~G~~~g~  163 (381)
                      .|++..+.+++.+++.++..++.++.|+++||+  |||+.. .....+..++.+....  ..+.+...++.++.|.+...
T Consensus       284 ~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  363 (452)
T PRK11273        284 KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYG  363 (452)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHh
Confidence            578888999999999999999999999999999  555432 2222333333322222  23444455555555554433


Q ss_pred             HhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHH-HHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHhh
Q 016882          164 AMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMV-GGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW  233 (381)
Q Consensus       164 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~~  233 (381)
                      .......+..|.+|++.||++.|+.+....+|.. .+|.+.+.+.+.. ||+..|++.++.+++.++....
T Consensus       364 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~-g~~~~f~~~~~~~~~~~~~~~~  433 (452)
T PRK11273        364 PVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF-GWDGGFMVMIGGSILAVILLIV  433 (452)
T ss_pred             HHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHh-cchHHHHHHHHHHHHHHHHHHH
Confidence            3334455678999999999999999888888765 4799999999987 8999999888887776555544

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.43  E-value=7.5e-12  Score=117.35  Aligned_cols=141  Identities=13%  Similarity=0.126  Sum_probs=118.2

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA  168 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~  168 (381)
                      .|.+..+.+++.+...++..+++++.|++.||+|+|+.+..+.++..++.+...  . ......+.++.|++.+...|..
T Consensus       230 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~~~~~~~p~~  306 (381)
T PRK03633        230 QGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGAAGFTLYPVA  306 (381)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHHHHHhHHHHH
Confidence            588888999999999999999999999999999999999888887777655443  2 2334456777888777788888


Q ss_pred             HHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHhh
Q 016882          169 PMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW  233 (381)
Q Consensus       169 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~~  233 (381)
                      .+.+.|..|+++++...+..+..+.+|..++|.+++++.++. +|++.|++.+.+.++..+..++
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~-g~~~~f~~~~~~~l~~~~~~~~  370 (381)
T PRK03633        307 MAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNY-SDNLLFIMIASVSFIYLLMLLR  370 (381)
T ss_pred             HHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHHHHHHh
Confidence            999999999888888888888899999999999999999987 8999999988887766555444

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.42  E-value=2.8e-12  Score=120.19  Aligned_cols=137  Identities=23%  Similarity=0.162  Sum_probs=111.1

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH--HHHHH--hchHHHHHHHHHHHHHHHhhH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGA--LVTAL--APDFIIMVVGRFVFGIGIGLA  164 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~--~~~~~--~~~~~~~~~~r~l~G~~~g~~  164 (381)
                      +|.+..+.+++.+...++..++.++.|+++||+|||+.+..+..+..+..  +....  .++.+.+.+..++.|++.+..
T Consensus       250 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  329 (394)
T TIGR00883       250 LGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMY  329 (394)
T ss_pred             cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH
Confidence            68888999999999999999999999999999999998776554444333  22222  246677777888899998889


Q ss_pred             hHHHHHHHHhhCCcccchhHHhHH-HHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHH
Q 016882          165 MHAAPMYIAETAPTPMRGQLISLK-EFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAV  225 (381)
Q Consensus       165 ~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~  225 (381)
                      .+...+++.|.+|+++|+++.++. +....+|..++|.+++.+.+..+.|++.++..++..+
T Consensus       330 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l  391 (394)
T TIGR00883       330 TGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL  391 (394)
T ss_pred             hhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence            999999999999999999999984 5667789999999999999987448887776665544

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.42  E-value=3.4e-12  Score=120.34  Aligned_cols=132  Identities=21%  Similarity=0.199  Sum_probs=110.7

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH-HHHHhchHHHHHHHHHHHHHHHhhHhHH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGAL-VTALAPDFIIMVVGRFVFGIGIGLAMHA  167 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~r~l~G~~~g~~~~~  167 (381)
                      +|.+..+.+++.+...++..++.++.|++.||+|||+.+.++.++..+..+ +....++.+.+.++.++.|++.+...+.
T Consensus       269 ~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (405)
T TIGR00891       269 LGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGI  348 (405)
T ss_pred             hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccchhh
Confidence            688999999999999999999999999999999999999888776543333 3333456667777777788777777788


Q ss_pred             HHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhh
Q 016882          168 APMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGAS  220 (381)
Q Consensus       168 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~  220 (381)
                      .+.++.|.+|+++|++++|+.+....+|..++|++.+.+.+..+.|+..+...
T Consensus       349 ~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~~  401 (405)
T TIGR00891       349 LPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALASL  401 (405)
T ss_pred             HHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHhh
Confidence            88999999999999999999999999999999999999999873487766543

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.40  E-value=1.2e-11  Score=116.58  Aligned_cols=149  Identities=18%  Similarity=0.184  Sum_probs=119.2

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHHHHhhHhHH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAP-DFIIMVVGRFVFGIGIGLAMHA  167 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~r~l~G~~~g~~~~~  167 (381)
                      +|.+..+.+...+++.++..++.++.|++.||+|||+.+..+..+..++..+....+ +...+  .-++.|++.+...+.
T Consensus       235 ~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~g~g~g~~~~~  312 (393)
T PRK09705        235 IGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAMVCGLGLGGAFPL  312 (393)
T ss_pred             cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHHHHHHhccchHHH
Confidence            688999999999999999999999999999999999999888877777666554333 22222  234668888877787


Q ss_pred             HHHHHHhhCC-cccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHH-Hhhcccchh
Q 016882          168 APMYIAETAP-TPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMG-MWWLPASPR  239 (381)
Q Consensus       168 ~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~-~~~~~~~~~  239 (381)
                      ......+..+ +++|++..++.+....++..++|.+.+++.+..++|+..|++.++.+++..+. ..+.||++.
T Consensus       313 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (393)
T PRK09705        313 CLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFP  386 (393)
T ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            7777777774 67899999999999999999999999999998767899898888877765444 455677654

>TIGR00788 fbt folate/biopterin transporter

Probab=99.40  E-value=7.2e-12  Score=120.35  Aligned_cols=172  Identities=13%  Similarity=-0.019  Sum_probs=126.6

Q ss_pred             HHHHHHhhhccccccccc-ccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----hHHHHHH
Q 016882           56 FPALGGLLYGYDIGSTSC-ATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILG-----RRRELIL  129 (381)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~G-----rk~~l~~  129 (381)
                      +....++..|+. ..... ..+.+.++       +|++..+.+.+.++..+.+.+-.+ +|+++||++     ||+.+++
T Consensus        30 ~~~~~y~~qGl~-~l~~~~~~~~l~~~-------lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~  100 (468)
T TIGR00788        30 IGLQVLFVKGIA-GLMRLPLSPMLTDD-------LGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVL  100 (468)
T ss_pred             HHHHHHHHhhHH-HHhhhhhhHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHH
Confidence            334445666776 44443 44444444       799999999999999999999665 999999998     7777777


Q ss_pred             HHHHHH-HHHHHHHHhchHH-HHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhH---HHHHHHHHHHHHHHHHH
Q 016882          130 AALLYL-VGALVTALAPDFI-IMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISL---KEFFIVLGMVGGYGIGS  204 (381)
Q Consensus       130 ~~~~~~-~~~~~~~~~~~~~-~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~g~~~~~~~~~  204 (381)
                      +.++.. ++....+..++.. ...+..++.+++.+...+..-.+..|..+ +++....+.   ......+|..+++.+++
T Consensus       101 ~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G  179 (468)
T TIGR00788       101 SGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGG  179 (468)
T ss_pred             HHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHH
Confidence            776663 3333333334433 34447889999999999999999999998 555544333   33444589999999999


Q ss_pred             HhhcccchhHHHHHhhHHHHHHHHHHHhhcccch
Q 016882          205 LLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASP  238 (381)
Q Consensus       205 ~l~~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~  238 (381)
                      .+.+.. +|+..|++.+++.++..+..++++|++
T Consensus       180 ~l~~~~-~~~~~f~~~a~l~ll~~~~~~~~~E~~  212 (468)
T TIGR00788       180 PLLDKT-LTRILFLITAALLLLQLFVSNLSKERR  212 (468)
T ss_pred             HHHHhc-CcchHHHHHHHHHHHHHHHHHhccccc
Confidence            999887 999999999888887766667778753

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.40  E-value=1.8e-11  Score=116.88  Aligned_cols=149  Identities=16%  Similarity=0.148  Sum_probs=136.2

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchH--HHHHHHHHHHHHHHHHHHH--------hchHHHHHHHHHHHH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRR--RELILAALLYLVGALVTAL--------APDFIIMVVGRFVFG  158 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk--~~l~~~~~~~~~~~~~~~~--------~~~~~~~~~~r~l~G  158 (381)
                      +|++..+...+..+..+..++|++++|++.||+|.|  +++.++++++.+..+...+        .++.+.+++..++.|
T Consensus       312 lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G  391 (477)
T PF11700_consen  312 LGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIG  391 (477)
T ss_pred             cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHH
Confidence            899999999999999999999999999999999999  8999988888666665555        678899999999999


Q ss_pred             HHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHhhcccc
Q 016882          159 IGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPAS  237 (381)
Q Consensus       159 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~  237 (381)
                      ++.|..++..-++.+|+.|+++.+..+|++.......+.+||++.+.+.+..++-|+.++...++.++.++++++++..
T Consensus       392 ~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~~  470 (477)
T PF11700_consen  392 LFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFVDVE  470 (477)
T ss_pred             HHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccch
Confidence            9999999999999999999999999999999999999999999999999988779999999998888888877776653

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.39  E-value=5.1e-12  Score=122.71  Aligned_cols=137  Identities=13%  Similarity=0.049  Sum_probs=109.5

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHh--chHHHHHHHHHHHHHHHhhHhH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALA--PDFIIMVVGRFVFGIGIGLAMH  166 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~r~l~G~~~g~~~~  166 (381)
                      +|.+..+.+++.+...++..++.++.|+++||+|||+.+.++.++..+..++....  .+.+.+.+..++.+....+..+
T Consensus       306 ~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (496)
T PRK03893        306 LGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISG  385 (496)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccch
Confidence            78999999999999999999999999999999999999888877666655444332  3444444555554444334456


Q ss_pred             HHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHH
Q 016882          167 AAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVI  226 (381)
Q Consensus       167 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~  226 (381)
                      ..+.++.|.+|+++|++.+++.+....+|..++|.+++.+.+.. ||+..+.+.+....+
T Consensus       386 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~-g~~~~~~~~~~~~~~  444 (496)
T PRK03893        386 LLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRL-DLGTALASLSFSLTF  444 (496)
T ss_pred             hhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccC-ChHHHHHHHHHHHHH
Confidence            77788999999999999999999999999999999999999987 898887665554443

>PRK03545 putative arabinose transporter; Provisional

Probab=99.39  E-value=3.2e-11  Score=113.51  Aligned_cols=142  Identities=20%  Similarity=0.089  Sum_probs=118.0

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH-HHHHHhchHHHHHHHHHHHHHHHhhHhHH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGA-LVTALAPDFIIMVVGRFVFGIGIGLAMHA  167 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~r~l~G~~~g~~~~~  167 (381)
                      +|.+..+.+++.+...++..+++++.|+++||+|||+.+. +..+..++. .+....++.+.++++.++.|++.+...+.
T Consensus       236 ~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~  314 (390)
T PRK03545        236 AGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLA  314 (390)
T ss_pred             cCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHH
Confidence            5888899999999999999999999999999999887544 444444433 33445677888888999999988777777


Q ss_pred             HHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHhh
Q 016882          168 APMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW  233 (381)
Q Consensus       168 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~~  233 (381)
                      ....+.+..| ++|+++++++.....+|..+|+.+++.+.++. |++..|++.+++.++.++...+
T Consensus       315 ~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~-g~~~~~~~~~~~~~~~~~~~~~  378 (390)
T PRK03545        315 MQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHL-GLSSIGYVGAALALAALVWSIL  378 (390)
T ss_pred             HHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ChhHHHHHHHHHHHHHHHHHHH
Confidence            7888888877 68899999999999999999999999999997 9999999999888876655544

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.38  E-value=7.5e-12  Score=120.45  Aligned_cols=148  Identities=15%  Similarity=0.029  Sum_probs=115.7

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHh-----c------hHHHHHHHHHHH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALA-----P------DFIIMVVGRFVF  157 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~-----~------~~~~~~~~r~l~  157 (381)
                      +|.+..+.++......++..++.++.|+++||+|||+.+.++.++.+++.++..+.     +      +...+....++.
T Consensus       314 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (481)
T TIGR00879       314 AGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFI  393 (481)
T ss_pred             cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHH
Confidence            68888888999999999999999999999999999999999888877777666521     1      222223333333


Q ss_pred             HHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHh-hccc
Q 016882          158 GIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMW-WLPA  236 (381)
Q Consensus       158 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~-~~~~  236 (381)
                      +.......+....++.|.+|+++|++++++.+....+|.++++.+.+.+.+.. +|++.|++.++++++.++..+ +.||
T Consensus       394 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~-~~~~~f~~~~~~~~~~~i~~~~~~~~  472 (481)
T TIGR00879       394 AFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESI-GVGGVFIFFGGLNVLGLIFVYFFLPE  472 (481)
T ss_pred             HHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CccceehhHHHHHHHHHHHHheeccc
Confidence            32222334666777899999999999999999999999999999999998876 899999999888877665554 4565


Q ss_pred             c
Q 016882          237 S  237 (381)
Q Consensus       237 ~  237 (381)
                      +
T Consensus       473 ~  473 (481)
T TIGR00879       473 T  473 (481)
T ss_pred             C
Confidence            4

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.38  E-value=2.4e-11  Score=115.37  Aligned_cols=149  Identities=18%  Similarity=0.131  Sum_probs=128.3

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA  168 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~  168 (381)
                      +|.+..+.+++.+...++..++.++.+++.||.++++.+..+.++..++.++..+.++.+.+.++.++.|++.+...+..
T Consensus       254 ~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  333 (417)
T PRK10489        254 WQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQ  333 (417)
T ss_pred             cCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            58888999999999999999999999999999888888888888888888777788888888888999999988888888


Q ss_pred             HHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHH-HHHHHhhcccch
Q 016882          169 PMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVI-MGMGMWWLPASP  238 (381)
Q Consensus       169 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~-~~~~~~~~~~~~  238 (381)
                      .+++.|..|++.||++++++.....+|..+|+.+.+.+.+.. |++..+++.+++.++ .++.....|+.+
T Consensus       334 ~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (417)
T PRK10489        334 YTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMM-TPVASASASGFGLLIIGVLLLLVLGELR  403 (417)
T ss_pred             HHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHh-chhhHHHHHHHHHHHHHHHHHHhccccc
Confidence            889999999999999999999999999999999999999987 888888777766555 444545556543

>TIGR00897 2A0118 polyol permease family

Probab=99.37  E-value=2.7e-11  Score=114.49  Aligned_cols=151  Identities=13%  Similarity=0.084  Sum_probs=117.7

Q ss_pred             ccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHH-HHHHHHHHHHHHHHH-----hchH
Q 016882           74 ATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELI-LAALLYLVGALVTAL-----APDF  147 (381)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~-~~~~~~~~~~~~~~~-----~~~~  147 (381)
                      ..|.+.++       +|.+..+.+++.+...++..++.++.|+++||+|||+.+. .+.+..+++.+....     .++.
T Consensus       244 ~~p~~~~~-------~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~  316 (402)
T TIGR00897       244 FLPMFVAE-------LGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSF  316 (402)
T ss_pred             HHHHHHHH-------cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcH
Confidence            45555554       6889999999999999999999999999999999988764 333333333333222     2456


Q ss_pred             HHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHH
Q 016882          148 IIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIM  227 (381)
Q Consensus       148 ~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~  227 (381)
                      +..+++.++.|++.+...+. ...+.|..| ++|+++.|+.+....+|..++|.+++.+.+.. ||+..|++.+++.++.
T Consensus       317 ~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~-g~~~~~~~~a~~~~i~  393 (402)
T TIGR00897       317 AVALIIAIALGIFLAGYVPL-AAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFF-GAIGVVWIFAALYVVS  393 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHHH
Confidence            77778888899888766554 456677655 68999999999999999999999999999987 8999999999888776


Q ss_pred             HHHHhhc
Q 016882          228 GMGMWWL  234 (381)
Q Consensus       228 ~~~~~~~  234 (381)
                      .+..+|+
T Consensus       394 ~~~~~~~  400 (402)
T TIGR00897       394 AFLTAFI  400 (402)
T ss_pred             HHHHHHh
Confidence            6666654

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.37  E-value=2.5e-11  Score=117.31  Aligned_cols=149  Identities=15%  Similarity=0.103  Sum_probs=111.4

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhc--h-HH-HHHHHHHHHHHHHhh-
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAP--D-FI-IMVVGRFVFGIGIGL-  163 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~--~-~~-~~~~~r~l~G~~~g~-  163 (381)
                      +|.+.....+......++..++.++.+++.||+|||+.++.+.++.+++.++++...  + .+ ....+.++.+++.+. 
T Consensus       301 ~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (479)
T PRK10077        301 LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMS  380 (479)
T ss_pred             cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcc
Confidence            677777777777788889999999999999999999999999998888877765431  1 11 223344444544443 


Q ss_pred             HhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhh------cccchhHHHHHhhHHHHHHHHHHHh-hccc
Q 016882          164 AMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLV------DLVAGWRYMYGASTPLAVIMGMGMW-WLPA  236 (381)
Q Consensus       164 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~------~~~~~w~~~f~i~~~~~~~~~~~~~-~~~~  236 (381)
                      ..+....++.|.+|+++|+.+.++.+....+|..+++.+.+.+.      +.. +|++.|++.++++++.++..+ +.||
T Consensus       381 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e  459 (479)
T PRK10077        381 WGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHF-HNGFSYWIYGCMGVLAALFMWKFVPE  459 (479)
T ss_pred             ccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhc-cCccHHHHHHHHHHHHHHHHHhcccc
Confidence            23667899999999999999999999999999988876665443      344 788889888877776555444 4566


Q ss_pred             ch
Q 016882          237 SP  238 (381)
Q Consensus       237 ~~  238 (381)
                      ++
T Consensus       460 ~~  461 (479)
T PRK10077        460 TK  461 (479)
T ss_pred             CC
Confidence            53

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.36  E-value=1.4e-11  Score=116.26  Aligned_cols=141  Identities=13%  Similarity=0.155  Sum_probs=122.9

Q ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHHH
Q 016882           90 DLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAP  169 (381)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~  169 (381)
                      +.+....+.+.++..+...++.+..|++.||+|||+.+.++.++.++...+....++.+.+++++++.|++.........
T Consensus       250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~  329 (396)
T TIGR00882       250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF  329 (396)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            55667789999999999999999999999999999999999998888888777888999889999999999887777777


Q ss_pred             HHHHhhCCcccchhHHhH-HHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHH
Q 016882          170 MYIAETAPTPMRGQLISL-KEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGM  231 (381)
Q Consensus       170 ~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~  231 (381)
                      .+..+..+++.+++..+. .+....+|..+++.+++++.+.. ||+..|.+.+++.++..+..
T Consensus       330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~-G~~~~f~~~~~~~~i~~~~~  391 (396)
T TIGR00882       330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSI-GFQGAYLVLGCIVLLFTLIS  391 (396)
T ss_pred             HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhc-ccHHHHHHHHHHHHHHHHHH
Confidence            888888998988887776 67899999999999999999987 99999999888877654443

>PRK09669 putative symporter YagG; Provisional

Probab=99.35  E-value=2.3e-11  Score=116.48  Aligned_cols=148  Identities=19%  Similarity=0.125  Sum_probs=110.5

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHh----hch-HHHHHHHHHHHHHHHHHHHHhch------HHHHHHHHHHH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADI----LGR-RRELILAALLYLVGALVTALAPD------FIIMVVGRFVF  157 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~Gr-k~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~r~l~  157 (381)
                      +|++..+.|.+.++..+..++..|+.|+++||    +|| |+.++.+.+..+++..+....++      ++.+++...+.
T Consensus        40 ~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~  119 (444)
T PRK09669         40 FGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILL  119 (444)
T ss_pred             cCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHH
Confidence            79999999999999999999999999999998    777 56666677777776655544432      45566667777


Q ss_pred             HHHHhhHhHHHHHHHHhhC-CcccchhHHhHHHHHHHHHHHHHHHHHHHhhcc------cchhHHHHHhhHHHHHHHHHH
Q 016882          158 GIGIGLAMHAAPMYIAETA-PTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDL------VAGWRYMYGASTPLAVIMGMG  230 (381)
Q Consensus       158 G~~~g~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~------~~~w~~~f~i~~~~~~~~~~~  230 (381)
                      +.+.........++.+|+. ++++|++..++...+..+|..+++.+...+...      ..+|+..+.+.+++.++..+.
T Consensus       120 ~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~  199 (444)
T PRK09669        120 SLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFC  199 (444)
T ss_pred             HHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence            7777777777788999988 568899988888888888877776655444321      137888888888877665544


Q ss_pred             Hh-hccc
Q 016882          231 MW-WLPA  236 (381)
Q Consensus       231 ~~-~~~~  236 (381)
                      .+ ..+|
T Consensus       200 ~~~~~~e  206 (444)
T PRK09669        200 CFFMTKE  206 (444)
T ss_pred             HhCCeEE
Confidence            33 3444

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.35  E-value=7e-11  Score=110.84  Aligned_cols=138  Identities=15%  Similarity=0.057  Sum_probs=118.3

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA  168 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~  168 (381)
                      .|.+..+.+.+.++..++..+..++.|++.||+|+|+.+.++.++.+++.++.+..++.+.+++..++.|++.+...+..
T Consensus       235 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~  314 (382)
T PRK11128        235 AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAA  314 (382)
T ss_pred             CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            68899999999999999999999999999999999999999999988888888888999999999999999999988998


Q ss_pred             HHHHHhhCCcccchhHHhHHH-HHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHH
Q 016882          169 PMYIAETAPTPMRGQLISLKE-FFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGM  229 (381)
Q Consensus       169 ~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~  229 (381)
                      ..++.+. +++++++..++.+ ....+|..+|+.++|.+.+.. |+ ..|++.+++.++.++
T Consensus       315 ~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~-g~-~~~~~~~~~~~~~~~  373 (382)
T PRK11128        315 MRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHL-GA-GVFWVMALVALPALF  373 (382)
T ss_pred             HHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cH-HHHHHHHHHHHHHHH
Confidence            9988887 5666788888875 566788899999999999987 66 456666665554433

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.35  E-value=7.6e-11  Score=114.10  Aligned_cols=147  Identities=16%  Similarity=0.166  Sum_probs=118.4

Q ss_pred             ccCChhHHHHHHH-HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH---HHh-chHHHHHHHHHHHHHHHhh
Q 016882           89 YDLSSVEIGLITS-GSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVT---ALA-PDFIIMVVGRFVFGIGIGL  163 (381)
Q Consensus        89 ~~~~~~~~~~~~~-~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~---~~~-~~~~~~~~~r~l~G~~~g~  163 (381)
                      +|.+..+.+++.. ...++.+++.+++|+++||+|+|+.+.++.++.+++.++.   +.. ++.+.+.+.-++..++.|.
T Consensus       253 ~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~  332 (491)
T PRK11010        253 VGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGM  332 (491)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence            6999999999974 6678999999999999999999998877666555544332   232 3555555566666666666


Q ss_pred             HhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHhhccc
Q 016882          164 AMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPA  236 (381)
Q Consensus       164 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~~~~~  236 (381)
                      ..+...++..++.+++.+++..++.+....+|..+++++.+.+.+.. ||+..|.+.++++++.++...++++
T Consensus       333 ~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~-G~~~~f~~~~~~~l~~l~~~~~~~~  404 (491)
T PRK11010        333 GTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAH-GWPTFYLFSVAAAVPGLLLLLVCRQ  404 (491)
T ss_pred             HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHHHh
Confidence            66777888999999999999999999999999999999999999987 9999999999998887776666554

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.34  E-value=2.3e-10  Score=107.18  Aligned_cols=167  Identities=19%  Similarity=0.234  Sum_probs=114.8

Q ss_pred             hhcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHHHHHH
Q 016882           63 LYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILG-RRRELILAALLYLVGALVT  141 (381)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~G-rk~~l~~~~~~~~~~~~~~  141 (381)
                      .+....+...+..+.+.++       .|+|..|+|.+.++..+..+++++++|.++||.+ +|+.+.+..++.++.....
T Consensus        13 ~~f~~~G~~~p~~~~~L~~-------~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~   85 (400)
T PF03825_consen   13 LYFFAYGAFLPYLPLYLES-------RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLL   85 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHH
Confidence            3333444444555666555       6999999999999999999999999999999986 5777777777777777777


Q ss_pred             HHhchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHH-HHHhhccc--chhHHHHH
Q 016882          142 ALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGI-GSLLVDLV--AGWRYMYG  218 (381)
Q Consensus       142 ~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~-~~~l~~~~--~~w~~~f~  218 (381)
                      ...++++.+++..++..+......|...++..+....  ++.-.|-.-...++|-.++... ...+....  .+..+.++
T Consensus        86 ~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~--~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~  163 (400)
T PF03825_consen   86 AFSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD--RGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFY  163 (400)
T ss_pred             HHhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccc--ccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHH
Confidence            7788899898888888888888888888888887752  3333444444445555444332 12222111  13334566


Q ss_pred             hhHHHHHHHHHHHhhcccch
Q 016882          219 ASTPLAVIMGMGMWWLPASP  238 (381)
Q Consensus       219 i~~~~~~~~~~~~~~~~~~~  238 (381)
                      +.++..++.....+.+|+.|
T Consensus       164 i~~~~~~ll~~~~l~lp~~~  183 (400)
T PF03825_consen  164 IAAILSLLLAGFALFLPKTP  183 (400)
T ss_pred             HHHHHHHHHHHHHHhCCCCc
Confidence            66666655555566678776

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.33  E-value=2.4e-10  Score=109.11  Aligned_cols=119  Identities=19%  Similarity=0.266  Sum_probs=102.5

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHHHhhHhHHHHH
Q 016882           92 SSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALA-PDFIIMVVGRFVFGIGIGLAMHAAPM  170 (381)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~r~l~G~~~g~~~~~~~~  170 (381)
                      +..+.+++.++..++..++.++++++.||+|+|+.+.++.++.+++.++..+. ++.+.+++..++.|++.+...+...+
T Consensus       255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  334 (437)
T TIGR00792       255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA  334 (437)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667788888899999999999999999999999999988888877776665 46677778888999999999999999


Q ss_pred             HHHhhCC-------cccchhHHhHHHHHHHHHHHHHHHHHHHhhccc
Q 016882          171 YIAETAP-------TPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV  210 (381)
Q Consensus       171 ~~~~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  210 (381)
                      +++|..+       ++++|...++.+....+|..+++.+.+.+.+..
T Consensus       335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~  381 (437)
T TIGR00792       335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGII  381 (437)
T ss_pred             HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            9998865       567899999999999999999999999988654

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.32  E-value=4.9e-11  Score=115.09  Aligned_cols=149  Identities=13%  Similarity=0.098  Sum_probs=109.5

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHH----hhch-HHHHHHHHHHHHHHHHHHHHhc------hHHHHHHHHHHH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIAD----ILGR-RRELILAALLYLVGALVTALAP------DFIIMVVGRFVF  157 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~Gr-k~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~r~l~  157 (381)
                      +|++...+|.+..+.-+..++..|+.|.++|    |+|| |+.++++.+..+++..++...+      .+..+++...+.
T Consensus        37 ~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~  116 (473)
T PRK10429         37 VGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILW  116 (473)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHH
Confidence            6999999999999999999999999999999    6698 6677778777777766554432      134455666777


Q ss_pred             HHHHhhHhHHHHHHHHhhC-CcccchhHHhHHHHHHHHHHHHHHHHHHHhhc------ccchhHHHHHhhHHHHHHHHHH
Q 016882          158 GIGIGLAMHAAPMYIAETA-PTPMRGQLISLKEFFIVLGMVGGYGIGSLLVD------LVAGWRYMYGASTPLAVIMGMG  230 (381)
Q Consensus       158 G~~~g~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~------~~~~w~~~f~i~~~~~~~~~~~  230 (381)
                      +++.........++..|+. ++++|.+..++-..+..+|..+.+.+...+.+      ...+|+...++.+++.+++.+.
T Consensus       117 ~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~  196 (473)
T PRK10429        117 GMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTII  196 (473)
T ss_pred             HHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence            8888888888899999999 68999999998777777776666555444321      1125777777777776654443


Q ss_pred             Hh-hcccc
Q 016882          231 MW-WLPAS  237 (381)
Q Consensus       231 ~~-~~~~~  237 (381)
                      .+ ..+|.
T Consensus       197 ~~~~~~e~  204 (473)
T PRK10429        197 TLRNVHEV  204 (473)
T ss_pred             HHcCceec
Confidence            33 35553

>TIGR00895 2A0115 benzoate transport

Probab=99.32  E-value=1.8e-11  Score=114.92  Aligned_cols=118  Identities=20%  Similarity=0.112  Sum_probs=100.2

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA  168 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~  168 (381)
                      +|.+..+.+++.++..++..++.++.|++.||+|||+.+....+....+.++....++.+.+++..++.|++.+...+..
T Consensus       280 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  359 (398)
T TIGR00895       280 LGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGL  359 (398)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHH
Confidence            68889999999999999999999999999999999955544444333333333335677778888899999999999999


Q ss_pred             HHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHh
Q 016882          169 PMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLL  206 (381)
Q Consensus       169 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  206 (381)
                      .+++.|.+|+++|+++.++......+|..++|.+++.+
T Consensus       360 ~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       360 YALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            99999999999999999999999999999999999875

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.31  E-value=2.3e-11  Score=118.36  Aligned_cols=139  Identities=13%  Similarity=-0.002  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhch----HHHHHHHHHHHHHHHhhHhHHHHHHHHhhC
Q 016882          101 SGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPD----FIIMVVGRFVFGIGIGLAMHAAPMYIAETA  176 (381)
Q Consensus       101 ~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~  176 (381)
                      .+..++..++.++.+++.||+|||+.++++..+.+++.++..+..+    ...+...-+...++..+..+....+.+|.+
T Consensus       342 ~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~  421 (502)
T TIGR00887       342 IIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVF  421 (502)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccC
Confidence            3455566778899999999999999998888777776665554321    111111111112222234456677889999


Q ss_pred             CcccchhHHhHHHHHHHHHHHHHHHHHHHhhccc---------chhHHHHHhhHHHHHHHHHHHhhcccchh
Q 016882          177 PTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV---------AGWRYMYGASTPLAVIMGMGMWWLPASPR  239 (381)
Q Consensus       177 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---------~~w~~~f~i~~~~~~~~~~~~~~~~~~~~  239 (381)
                      |.+.|+++.++.+....+|.++++.+.+.+.+..         .++...|++.+++.++..+..+++||+++
T Consensus       422 p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~lpEt~~  493 (502)
T TIGR00887       422 PTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFTLLIPETKG  493 (502)
T ss_pred             chhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHheEeccCCC
Confidence            9999999999999999999999999999888732         14566778777777776666667898754

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK11462 putative transporter; Provisional

Probab=99.31  E-value=3.4e-10  Score=108.63  Aligned_cols=144  Identities=14%  Similarity=0.052  Sum_probs=112.3

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHh----hchH-HHHHHHHHHHHHHHHHHHHhch------HHHHHHHHHHH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADI----LGRR-RELILAALLYLVGALVTALAPD------FIIMVVGRFVF  157 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~Grk-~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~r~l~  157 (381)
                      +|+++..+|.+..+.-+.-++.-|+.|.++||    +||| +.++++.+..+++..++...++      ...+.+...+.
T Consensus        40 ~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~  119 (460)
T PRK11462         40 FGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLL  119 (460)
T ss_pred             hCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHH
Confidence            79999999999999999999999999999996    6875 5555677777777766654442      34466677778


Q ss_pred             HHHHhhHhHHHHHHHHhhCC-cccchhHHhHHHHHHHHHHHHHHHHHHHhhccc------chhHHHHHhhHHHHHHHHHH
Q 016882          158 GIGIGLAMHAAPMYIAETAP-TPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV------AGWRYMYGASTPLAVIMGMG  230 (381)
Q Consensus       158 G~~~g~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~------~~w~~~f~i~~~~~~~~~~~  230 (381)
                      .++.........++.+|+.+ +++|++..++...+..+|..+++.+...+.+..      .+|+....+.+++.+++.++
T Consensus       120 ~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i  199 (460)
T PRK11462        120 TLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAF  199 (460)
T ss_pred             HHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence            88888888888899999987 799999999999999998888877766655332      26888777777776665544


Q ss_pred             Hh
Q 016882          231 MW  232 (381)
Q Consensus       231 ~~  232 (381)
                      .+
T Consensus       200 ~~  201 (460)
T PRK11462        200 CF  201 (460)
T ss_pred             HH
Confidence            43

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.30  E-value=1.1e-10  Score=108.11  Aligned_cols=146  Identities=21%  Similarity=0.185  Sum_probs=132.0

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-chHHHHHHHHHHHHHHHHHHHHhc--hHHHHHHHHHHHHHHHhhHh
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADIL-GRRRELILAALLYLVGALVTALAP--DFIIMVVGRFVFGIGIGLAM  165 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-Grk~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~r~l~G~~~g~~~  165 (381)
                      +|++++++.-+.+.|..-.-+..+++||++||+ |+|++++.|.++..++.++.+...  ....++++..+.++|.|..=
T Consensus        56 Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K  135 (498)
T COG3104          56 LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFK  135 (498)
T ss_pred             CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhcccccc
Confidence            679999999999999988899999999999996 999999999999999999999884  78889999999999999999


Q ss_pred             HHHHHHHHhhCCcc--cchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHhhcc
Q 016882          166 HAAPMYIAETAPTP--MRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLP  235 (381)
Q Consensus       166 ~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~~~~  235 (381)
                      +...++++|.+|++  +|-...++++.+.++|+.++|.+.+++.+.+ ||...|...++-..+.++.+++.+
T Consensus       136 ~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~-g~~~gF~~aavGm~~gl~~f~~~~  206 (498)
T COG3104         136 PNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINY-GWHVGFGLAAVGMIIGLVIFLLGR  206 (498)
T ss_pred             ccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHHHHHHcc
Confidence            99999999999753  3667788889999999999999999999998 999999999998888777776654

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.30  E-value=6e-11  Score=114.53  Aligned_cols=153  Identities=21%  Similarity=0.282  Sum_probs=135.9

Q ss_pred             cccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhchHHHHHH
Q 016882           73 CATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVV  152 (381)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~  152 (381)
                      ..+|.+.++.      +|.++...|++.+.+.+|..+|+++.+++.+|+++++.+..+.++.+++.+..+++++.+..++
T Consensus       239 aLlPl~a~~~------l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~  312 (524)
T PF05977_consen  239 ALLPLFARDV------LGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALI  312 (524)
T ss_pred             HhhhHHHHHH------hCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHH
Confidence            3456655432      7889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHh
Q 016882          153 GRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMW  232 (381)
Q Consensus       153 ~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~  232 (381)
                      +.++.|++.........+.+.+..|++.||+.++++++....+..+|..+.|.+.+.. |.+..+.+.++..++..++.+
T Consensus       313 ~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~-g~~~al~~a~~~lll~~~~~~  391 (524)
T PF05977_consen  313 ALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHF-GVRTALLIAGAALLLSALIAL  391 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999987 888888887776655444433

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.29  E-value=9.5e-11  Score=111.87  Aligned_cols=143  Identities=16%  Similarity=0.109  Sum_probs=102.4

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh--ch-HHHHHH---HHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHh
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADIL--GR-RRELIL---AALLYLVGALVTALAPDFIIMVVGRFVFGIGIG  162 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--Gr-k~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g  162 (381)
                      +|++..+.++..+.+.++..++.++.|+++||+  ++ |.....   +..+..++..... ..+.....+..+..|++..
T Consensus       274 ~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~  352 (434)
T PRK11663        274 LGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMP-FASYVMQAACFFTIGFFVF  352 (434)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcc-cccHHHHHHHHHHHHHHHh
Confidence            689999999999999999999999999999999  33 332222   1111111111111 2233333344444554433


Q ss_pred             hHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHhh
Q 016882          163 LAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW  233 (381)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~~  233 (381)
                      .........+.|.+|+++|+++.|+.+....+|..++|.+.+++.+.. ||+..|++.+++.++..+..+.
T Consensus       353 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~-g~~~~f~~~~~~~~~~~~~~~~  422 (434)
T PRK11663        353 GPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIW-HWTGFFVVISIAAGISALLLLP  422 (434)
T ss_pred             hHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHH
Confidence            333344567789999999999999999999999999999999999987 8999999998888776554443

>TIGR00898 2A0119 cation transport protein

Probab=99.28  E-value=1.4e-10  Score=112.94  Aligned_cols=136  Identities=21%  Similarity=0.139  Sum_probs=112.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhchH--HHHHHHHHHHHHHHhhHhHHHHHHHHhhCC
Q 016882          100 TSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDF--IIMVVGRFVFGIGIGLAMHAAPMYIAETAP  177 (381)
Q Consensus       100 ~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~  177 (381)
                      ..+..+...++.++.+++.||+|||+.+.++.++.+++.++..+.++.  +...+..++.+++.+...+....+..|.+|
T Consensus       361 ~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p  440 (505)
T TIGR00898       361 LFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYP  440 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            344556777888999999999999999999999988888877776543  555556667777778788888999999999


Q ss_pred             cccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHhhcccch
Q 016882          178 TPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASP  238 (381)
Q Consensus       178 ~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~  238 (381)
                      ++.|+.++|+.+....+|.+++|.+.+ +.+ . ++...+++.++..++..+..+++||+.
T Consensus       441 ~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~-~-~~~~~~~~~~~~~~~~~~~~~~lpet~  498 (505)
T TIGR00898       441 TVVRNLGVGVCSTMARVGSIISPFLVY-LGE-K-WLFLPLVLFGGLALLAGILTLFLPETK  498 (505)
T ss_pred             HHHHhhhHhHHHHHHHHHHHHHhHHHH-HHH-H-HHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence            999999999999999999999999998 433 3 677788888888888777777888864

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.28  E-value=6.5e-11  Score=109.82  Aligned_cols=122  Identities=20%  Similarity=0.254  Sum_probs=111.9

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhch-HHHHHHHHHHHHHHHhhHhHH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPD-FIIMVVGRFVFGIGIGLAMHA  167 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~r~l~G~~~g~~~~~  167 (381)
                      +|.+..+.+++.+...++..++.++.+++.||+|||+.+..+.++.+++..+..+.++ .+.++++.++.|++.+...+.
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  321 (365)
T TIGR00900       242 LGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVP  321 (365)
T ss_pred             hCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHH
Confidence            5888999999999999999999999999999999999999888888888777777774 888889999999999999999


Q ss_pred             HHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhccc
Q 016882          168 APMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV  210 (381)
Q Consensus       168 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  210 (381)
                      ..+++.|..|+++|++..++.+....+|..+++.+++.+.+..
T Consensus       322 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~  364 (365)
T TIGR00900       322 QGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHL  364 (365)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            9999999999999999999999999999999999999987653

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.28  E-value=5.1e-11  Score=108.04  Aligned_cols=149  Identities=17%  Similarity=0.161  Sum_probs=138.3

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA  168 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~  168 (381)
                      +|++..+..++.....+..++|++++|+|.||+|.|+++.++++++.+.++...+...-..+.++-.+.|...|+.++.+
T Consensus       283 ~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~S  362 (438)
T COG2270         283 LGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASS  362 (438)
T ss_pred             cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHH
Confidence            89999999999999999999999999999999999999999999999988888887777778888899999999999999


Q ss_pred             HHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHhhcccc
Q 016882          169 PMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPAS  237 (381)
Q Consensus       169 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~  237 (381)
                      -+|..+..|+++-++.+|+++.....+..+||.+.+.+.+..++-|..+....++..+.+++++..|++
T Consensus       363 RSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~~  431 (438)
T COG2270         363 RSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVKVP  431 (438)
T ss_pred             HHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeecCC
Confidence            999999999999999999999999999999999999999988888998888888888877777777764

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.27  E-value=8.7e-11  Score=113.35  Aligned_cols=144  Identities=15%  Similarity=-0.012  Sum_probs=105.4

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchH-------HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRR-------RELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGI  161 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk-------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~  161 (381)
                      +|++..+.+.+.+++.++..++.+++|+++||+|||       ..+.+..++.+++.++....++.+...+..++.+++.
T Consensus       283 ~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~  362 (476)
T PLN00028        283 FGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFV  362 (476)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence            689999999999999999999999999999999875       2333333333343444445556666666666777766


Q ss_pred             hhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHhhcc
Q 016882          162 GLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLP  235 (381)
Q Consensus       162 g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~~~~  235 (381)
                      +...+...+++.+..| ++||...|+.+.+..+|..+++.+.+  .+..++|+..|++.+++.++..++.++++
T Consensus       363 ~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~--~~~~~~y~~~f~~~~~~~~i~~~~~~~~~  433 (476)
T PLN00028        363 QAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF--TGSSYSTETGISLMGVMIIACTLPVAFIH  433 (476)
T ss_pred             HHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH--hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence            6666666666777655 78999999988877778877776644  22233799999999988888777776665

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.27  E-value=2.9e-10  Score=108.48  Aligned_cols=147  Identities=14%  Similarity=0.007  Sum_probs=98.5

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH--H--hchHHHHHHHHHHHHHHHhhH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTA--L--APDFIIMVVGRFVFGIGIGLA  164 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~--~--~~~~~~~~~~r~l~G~~~g~~  164 (381)
                      +|.+..+.++..++..++..+++++.|+++||+|||+.+.++.++..+..+...  .  .++....+..-.+.+++.+..
T Consensus       274 ~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (432)
T PRK10406        274 AGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFY  353 (432)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHH
Confidence            688888999999998888899999999999999999988776655433332221  1  123332222222333344444


Q ss_pred             hHHHHHHHHhhCCcccchhHHhHHHHHHH-HHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHhhccc
Q 016882          165 MHAAPMYIAETAPTPMRGQLISLKEFFIV-LGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPA  236 (381)
Q Consensus       165 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~~~~~  236 (381)
                      .+....+++|++|++.|+++.|+.+.... +.....|.+.+.+ +..+.|...+++.++..++.++..+++++
T Consensus       354 ~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~~~~~~~l~~  425 (432)
T PRK10406        354 TSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVAFLVSLMLHR  425 (432)
T ss_pred             HHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHHHHHHHhhh
Confidence            45667889999999999999999876544 3344577777755 44435666777766666666655555443

>PRK10504 putative transporter; Provisional

Probab=99.26  E-value=3.9e-10  Score=108.82  Aligned_cols=122  Identities=19%  Similarity=0.237  Sum_probs=105.2

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHh---chHHHHHHHHHHHHHHHhhHh
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALA---PDFIIMVVGRFVFGIGIGLAM  165 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~r~l~G~~~g~~~  165 (381)
                      +|.++.+.+++.....++..++.++.|++.||+|||+.+..+..+..+...+..+.   ++.+.+.+..++.|++.+...
T Consensus       292 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  371 (471)
T PRK10504        292 LGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRF  371 (471)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHH
Confidence            58889999999999999999999999999999999999999888888776666553   334445566778888888888


Q ss_pred             HHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhccc
Q 016882          166 HAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV  210 (381)
Q Consensus       166 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  210 (381)
                      +....++.+..|++.|+.+.++.+....+|..+|+.+++.+.+..
T Consensus       372 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~  416 (471)
T PRK10504        372 SSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLF  416 (471)
T ss_pred             HHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            888999999999999999999999999999999999999887654

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.26  E-value=5.3e-11  Score=113.38  Aligned_cols=228  Identities=17%  Similarity=0.196  Sum_probs=156.5

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHH----hhchHHH-HHHHHHHHHHHHHHHHHh-c-------hHHHHHHHHH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIAD----ILGRRRE-LILAALLYLVGALVTALA-P-------DFIIMVVGRF  155 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~Grk~~-l~~~~~~~~~~~~~~~~~-~-------~~~~~~~~r~  155 (381)
                      +|+++...|++..+.-+..++..|+.|.++|    |+|||+. +++|..+.+++.+++... +       ....+.+..+
T Consensus        32 ~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~  111 (428)
T PF13347_consen   32 LGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYI  111 (428)
T ss_pred             cCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHH
Confidence            6999999999999999999999999999999    8996555 556778888877777765 3       2334567777


Q ss_pred             HHHHHHhhHhHHHHHHHHhhCC-cccchhHHhHHHHHHHHHHHHHHHHHHHhhcccc------hhHHHHHhhHHHHHHHH
Q 016882          156 VFGIGIGLAMHAAPMYIAETAP-TPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVA------GWRYMYGASTPLAVIMG  228 (381)
Q Consensus       156 l~G~~~g~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~------~w~~~f~i~~~~~~~~~  228 (381)
                      +..++.........++..|+.+ +++|.+..+.-..+..+|.++...+.+.+.+..+      +|++..++.+++.++..
T Consensus       112 l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~  191 (428)
T PF13347_consen  112 LFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFF  191 (428)
T ss_pred             HHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHh
Confidence            7788888888888999999997 5799999999998888888777777776664322      79999998888887765


Q ss_pred             HHHh-hcccchhHHHHhhccccCcchhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhhccccccccchhhccccchH
Q 016882          229 MGMW-WLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLK  307 (381)
Q Consensus       229 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (381)
                      +..+ ..+|.++..               +                            .++++.+-...+++++++|.++
T Consensus       192 ~i~~~~~ke~~~~~---------------~----------------------------~~~~~~~~~~~~~~~~~nr~~~  228 (428)
T PF13347_consen  192 LITFFFVKERSVEV---------------T----------------------------EQEKKISLRDSLRSLFRNRPFR  228 (428)
T ss_pred             hhhhheeeeccccc---------------c----------------------------ccccccccccchhhhcccchHH
Confidence            5444 456611100               0                            0001122244567778777666


Q ss_pred             HHHHHHHHHHHHHhhchhHHHhcHHHHHHHc-CCCCCchhHHHHHHHHHHHHHHhHHHH
Q 016882          308 ALIIGAGLVLFQQITGQPSVLYYAASILQSA-GFSAASDATRVSILLGLFKVGSCTLFF  365 (381)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~~~~~  365 (381)
                      .+.....+..+.    ......+.+++.+.. |. + ........+..+..+++.+++-
T Consensus       229 ~l~~~~~~~~~~----~~~~~~~~~y~~~~vl~~-~-~~~~~~~~~~~~~~~v~~~~~~  281 (428)
T PF13347_consen  229 ILLLAFFLQWLA----FALMNTFLPYYFTYVLGN-E-GLISIFMLIFFVASIVGSPLWG  281 (428)
T ss_pred             HHHHHHHHHHhh----hhhhhhHHHHHHHHHhcC-c-hhhHHHHHHHHHHHHHHHHHHH
Confidence            555544444333    344445556666654 44 2 3445555566666666666544

>PRK15075 citrate-proton symporter; Provisional

Probab=99.26  E-value=3.1e-10  Score=108.39  Aligned_cols=124  Identities=22%  Similarity=0.141  Sum_probs=94.0

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH-H-H--HhchHHHHHHHHHHHHHHHhhH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALV-T-A--LAPDFIIMVVGRFVFGIGIGLA  164 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~-~-~--~~~~~~~~~~~r~l~G~~~g~~  164 (381)
                      +|++..+.+++...+.++..++.+++|+++||+|||+.+..+..+..+...+ . .  ..+++..+.+...+.|++.+..
T Consensus       269 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  348 (434)
T PRK15075        269 LHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSY  348 (434)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHH
Confidence            5888888999999999999999999999999999999988765544332211 1 1  1234444445556667777777


Q ss_pred             hHHHHHHHHhhCCcccchhHHhHHHH-HHHHHHHHHHHHHHHhhcccchh
Q 016882          165 MHAAPMYIAETAPTPMRGQLISLKEF-FIVLGMVGGYGIGSLLVDLVAGW  213 (381)
Q Consensus       165 ~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~~~~~l~~~~~~w  213 (381)
                      .+....++.|.+|++.|+++.++.+. +..+++.++|.+.+++.+.. |+
T Consensus       349 ~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~-g~  397 (434)
T PRK15075        349 NGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVT-GD  397 (434)
T ss_pred             HhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhc-CC
Confidence            77777889999999999999999644 44456788999999998876 54

>TIGR01272 gluP glucose/galactose transporter

Probab=99.26  E-value=4.8e-10  Score=101.83  Aligned_cols=131  Identities=15%  Similarity=0.169  Sum_probs=107.4

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA  168 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~  168 (381)
                      +|+++++.++..+.+..+..+|.++.+++.||+|+|+.+.++..+..++.++....++...+ .+-++.|++.+..+|..
T Consensus       173 ~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~-~~~~l~g~~~s~i~P~~  251 (310)
T TIGR01272       173 LGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAM-WFVLALGLFNSIMFPTI  251 (310)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999999999999999999988888887777666665544333 35568899999999999


Q ss_pred             HHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHH
Q 016882          169 PMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPL  223 (381)
Q Consensus       169 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~  223 (381)
                      .+...+..|++ .+++.++. ....+|..++|++.|.+.+.. |.+..|++..++
T Consensus       252 ~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~-g~~~a~~v~~~~  303 (310)
T TIGR01272       252 FSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCL-GIQLAFALPVPC  303 (310)
T ss_pred             HHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhc-cchHHHHHHHHH
Confidence            99888888753 46677775 456689999999999999987 788888754444

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.26  E-value=1.1e-10  Score=112.25  Aligned_cols=171  Identities=19%  Similarity=0.191  Sum_probs=149.1

Q ss_pred             HHHHhhhcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhc--hHHHHHHHHHHHH
Q 016882           58 ALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILG--RRRELILAALLYL  135 (381)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~G--rk~~l~~~~~~~~  135 (381)
                      .+...+..+...+....+|.+.+.       .+.+..+.+.+.++..+...++.++.|+++|+..  ++....+++++.+
T Consensus       304 ~~~~~~~~~g~~~p~~~l~~~~~~-------~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~g  376 (509)
T KOG2504|consen  304 ALSNLFAYLGFNVPFVYLPSYAKS-------LGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAG  376 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh-------cCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHH
Confidence            333334444444555567777665       7999999999999999999999999999999988  5666777888888


Q ss_pred             HHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHH
Q 016882          136 VGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRY  215 (381)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~  215 (381)
                      ++.+.++++++++.++..-.+.|++.|.........+.|+.+.++-..+.|+...+.+++..+||++++.+.+..++|..
T Consensus       377 l~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~  456 (509)
T KOG2504|consen  377 LARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDH  456 (509)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeee
Confidence            88889999999999999999999999999999889999999999999999999999999999999999999998877999


Q ss_pred             HHHhhHHHHHHHHHHHhhcc
Q 016882          216 MYGASTPLAVIMGMGMWWLP  235 (381)
Q Consensus       216 ~f~i~~~~~~~~~~~~~~~~  235 (381)
                      .|+..+++.++..+.+++.+
T Consensus       457 ~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  457 AFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             ehhhcChHHHHHHHHHHHhH
Confidence            99999999998887777765

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.25  E-value=2.9e-10  Score=108.21  Aligned_cols=129  Identities=14%  Similarity=0.134  Sum_probs=98.3

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH--HHhhHhH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGI--GIGLAMH  166 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~--~~g~~~~  166 (381)
                      .|.+..+.+.+.+...++..++.++.|++.||+|||+.+..+.++.++..++....++.....+.-.+.|+  +..+..+
T Consensus       261 ~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (426)
T PRK12307        261 EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGG  340 (426)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhH
Confidence            58888899999999999999999999999999999999988887776655544433321112222233333  2233345


Q ss_pred             HHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHH
Q 016882          167 AAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYG  218 (381)
Q Consensus       167 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~  218 (381)
                      ..+.++.|.+|+++|++++|+......+|..++|.+.+++.+.. ++....+
T Consensus       341 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~-g~~~~~~  391 (426)
T PRK12307        341 LVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITM-GLGAALT  391 (426)
T ss_pred             HHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcc-cHHHHHH
Confidence            56778899999999999999999999999999999999999876 6554433

>PRK10054 putative transporter; Provisional

Probab=99.25  E-value=1.1e-10  Score=109.92  Aligned_cols=141  Identities=12%  Similarity=0.082  Sum_probs=117.4

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHHHhhHhHH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALA-PDFIIMVVGRFVFGIGIGLAMHA  167 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~r~l~G~~~g~~~~~  167 (381)
                      .+.+....+++.+.+.+.....+++.|++.||+++|+.+..+..+..++.+...+. ++.+.+.++.++.|+|.+...+.
T Consensus       239 ~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~  318 (395)
T PRK10054        239 SDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPG  318 (395)
T ss_pred             cchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhh
Confidence            46777788888888888888888999999999999999999988888877777664 57777778889999999888888


Q ss_pred             HHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHH
Q 016882          168 APMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGM  231 (381)
Q Consensus       168 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~  231 (381)
                      ...++.+..|++.|++..+..+ ...+|..+||.+++.+.++. |....|++.++...+..++.
T Consensus       319 ~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~-g~~~~~~~~~~~~~~~~~~~  380 (395)
T PRK10054        319 EYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTL-PPWSLFVILALAIVAAWLLM  380 (395)
T ss_pred             HHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHc-ChhhHHHHHHHHHHHHHHHH
Confidence            8999999999999999988755 45589999999999999988 88888877666655544333

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.24  E-value=4.1e-10  Score=103.02  Aligned_cols=142  Identities=21%  Similarity=0.256  Sum_probs=120.8

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHHHhhHhHH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALA-PDFIIMVVGRFVFGIGIGLAMHA  167 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~r~l~G~~~g~~~~~  167 (381)
                      .|++.+..+++..++.++..+|++++|++.|| +.|+.+.....+..+..+...+. ++.+..++.-++.|+..+.....
T Consensus       242 ~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~  320 (394)
T COG2814         242 AGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQG  320 (394)
T ss_pred             cCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhH
Confidence            68899999999999999999999999999999 99999888877777777666654 45566666777788877766666


Q ss_pred             HHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHhh
Q 016882          168 APMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW  233 (381)
Q Consensus       168 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~~  233 (381)
                      ....+++ .-++.+..+.+++...+++|..+|..+++.+.++. |+....++.+++.++.+++.++
T Consensus       321 ~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~-g~~~~~~~~a~l~~~a~~~~~~  384 (394)
T COG2814         321 LQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDAL-GYAATGWVGAALLLLALLLALL  384 (394)
T ss_pred             HHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-chHHHHHHHHHHHHHHHHHHHH
Confidence            6666667 44588999999999999999999999999999996 9999999999998887776655

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.24  E-value=5.9e-10  Score=105.06  Aligned_cols=149  Identities=19%  Similarity=0.150  Sum_probs=117.2

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhc---h-H--H---HHHHHHHHHHH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAP---D-F--I---IMVVGRFVFGI  159 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~---~-~--~---~~~~~r~l~G~  159 (381)
                      -|++..++.+......+...++.+++.++.||+|||+.++++..+..+..+++....   + .  |   ..+++.++..+
T Consensus       300 aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~  379 (485)
T KOG0569|consen  300 AGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFII  379 (485)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            589999999999999999999999999999999999999999999888887776532   1 1  1   12233344443


Q ss_pred             HHhh-HhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHH-HHHHhhcccc
Q 016882          160 GIGL-AMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIM-GMGMWWLPAS  237 (381)
Q Consensus       160 ~~g~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~-~~~~~~~~~~  237 (381)
                      +.+. ..|+.+-+.+|++|++.|..+.++......++.++-......+.+..++  +.|++..+++++. +.++..+||+
T Consensus       380 ~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~--~~filF~i~~~~~~i~~~~~lPET  457 (485)
T KOG0569|consen  380 SFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP--YVFILFVIPLAIFLIYLYRYLPET  457 (485)
T ss_pred             hhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--hhhHHHHHHHHHHHHHHHHhCccc
Confidence            3332 3677788999999999999999999999999998888888888777644  6777777777765 4555669998


Q ss_pred             hh
Q 016882          238 PR  239 (381)
Q Consensus       238 ~~  239 (381)
                      +.
T Consensus       458 kg  459 (485)
T KOG0569|consen  458 KG  459 (485)
T ss_pred             CC
Confidence            54

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.22  E-value=1.2e-10  Score=111.44  Aligned_cols=148  Identities=15%  Similarity=0.130  Sum_probs=101.3

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH---HHHHHHHH--hchHHHHHHHHHHHHHHHhh
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYL---VGALVTAL--APDFIIMVVGRFVFGIGIGL  163 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~---~~~~~~~~--~~~~~~~~~~r~l~G~~~g~  163 (381)
                      .|.+..+.++..+++.++..++.++.|+++||+++++....+..+..   ++.+....  ..+.+...+..++.|++..+
T Consensus       282 ~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  361 (438)
T TIGR00712       282 KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYG  361 (438)
T ss_pred             cCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHcc
Confidence            58888999999999999999999999999999965432222322221   12122222  12344444444555554333


Q ss_pred             HhHHHHHHHHhhCCcccchhHHhHHHHHHHHH-HHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHH-HHhhcccc
Q 016882          164 AMHAAPMYIAETAPTPMRGQLISLKEFFIVLG-MVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGM-GMWWLPAS  237 (381)
Q Consensus       164 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g-~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~-~~~~~~~~  237 (381)
                      ..........|.+|+++|+++.|+.+....+| ..++|.+.+.+.+.. ||...|++.+++.++.++ ..+++||.
T Consensus       362 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (438)
T TIGR00712       362 PVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF-GWDGGFMVMIGGSILAVILLIVVMIGE  436 (438)
T ss_pred             HHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            33333456789999999999999998877776 578999999999987 899999888777666444 44446654

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.21  E-value=9.9e-11  Score=109.14  Aligned_cols=128  Identities=23%  Similarity=0.231  Sum_probs=97.2

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhch-HHHHH-HHH-HHHHHHHHHHHH--hchHHHHHHHHHHHHHHHhh
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGR-RRELI-LAA-LLYLVGALVTAL--APDFIIMVVGRFVFGIGIGL  163 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Gr-k~~l~-~~~-~~~~~~~~~~~~--~~~~~~~~~~r~l~G~~~g~  163 (381)
                      +|.+..+.+++.+...++..++.++.|++.||+++ |+... ... ....++......  ..+.+.+.++.++.|+....
T Consensus       247 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  326 (379)
T TIGR00881       247 KGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVYG  326 (379)
T ss_pred             hCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhh
Confidence            68899999999999999999999999999998643 33222 221 112222222222  23455566677777876666


Q ss_pred             HhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHH
Q 016882          164 AMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMY  217 (381)
Q Consensus       164 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f  217 (381)
                      ..+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+.. ||++.|
T Consensus       327 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~f  379 (379)
T TIGR00881       327 PQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGF-GWAGAF  379 (379)
T ss_pred             hhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhh-cccccC
Confidence            66667788999999999999999999999999999999999999987 888754

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.20  E-value=9.9e-10  Score=103.35  Aligned_cols=140  Identities=19%  Similarity=0.052  Sum_probs=110.2

Q ss_pred             ccCChhHHHHHHHHHHH-HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH------hchHHHHHHHHHHHHHHH
Q 016882           89 YDLSSVEIGLITSGSLY-GALIGSILAFNIADILGRRRELILAALLYLVGALVTAL------APDFIIMVVGRFVFGIGI  161 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~------~~~~~~~~~~r~l~G~~~  161 (381)
                      .|+++++.+++..+..+ ...++.++.|++.||+|+|+.+..+..+.++..+....      .++...+.....+.+++.
T Consensus       238 ~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (390)
T TIGR02718       238 AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLIT  317 (390)
T ss_pred             cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHH
Confidence            69999999999888764 66778899999999999999998877665333332221      123344455556667777


Q ss_pred             hhHhHHHHHHHHhhCCc-ccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHH
Q 016882          162 GLAMHAAPMYIAETAPT-PMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGM  229 (381)
Q Consensus       162 g~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~  229 (381)
                      |...+...+.+.+..++ +++++.+++.+....+|..++|.+++.+.+.. ||+..|++.+++.++.++
T Consensus       318 g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~-G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       318 GITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRF-GYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccHHHHHHHHHHHHHHHH
Confidence            87878888888788776 88999999999999999999999999999887 899999988877666544

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=99.19  E-value=9.9e-09  Score=94.50  Aligned_cols=151  Identities=19%  Similarity=0.199  Sum_probs=128.1

Q ss_pred             ccCChhHHH-HHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHH
Q 016882           89 YDLSSVEIG-LITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHA  167 (381)
Q Consensus        89 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~  167 (381)
                      .|++.+|.. -+.-+..-.+.+..++...++|..|-|++++++.+...+..++..+.++.+.+-+..++.|++.+. ..+
T Consensus        35 kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~-eva  113 (412)
T PF01770_consen   35 KNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAA-EVA  113 (412)
T ss_pred             cCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHH-HHH
Confidence            688887765 455666777888889999999999999999999999999999999999999999999999998884 677


Q ss_pred             HHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcc-cchhHHHHHhhHHHHHHHHHHHhhcccchhH
Q 016882          168 APMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDL-VAGWRYMYGASTPLAVIMGMGMWWLPASPRW  240 (381)
Q Consensus       168 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~  240 (381)
                      ..+|+--..|+++..++.+..-...-+|..++..++..+... ..+++...++......+.++..+++|..++.
T Consensus       114 y~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~S  187 (412)
T PF01770_consen  114 YYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPKRS  187 (412)
T ss_pred             HHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence            788998999999999999999999999999999999888752 2267777777777777777778888886654

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PRK09848 glucuronide transporter; Provisional

Probab=99.19  E-value=5e-09  Score=100.51  Aligned_cols=121  Identities=21%  Similarity=0.252  Sum_probs=99.6

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhc--hHHHHHHHHHHHHHHHhhHhH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAP--DFIIMVVGRFVFGIGIGLAMH  166 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~r~l~G~~~g~~~~  166 (381)
                      +|.+....++......++..++.++.+++.||+|+|+.+.++.++.+++.++..+.+  +++.+++..++.|+|.+...+
T Consensus       259 ~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~  338 (448)
T PRK09848        259 LNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMT  338 (448)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHH
Confidence            566665555555555677888999999999999999999999988888877776643  577777788899999999999


Q ss_pred             HHHHHHHhhCCcc-------cchhHHhHHHHHHHHHHHHHHHHHHHhhcc
Q 016882          167 AAPMYIAETAPTP-------MRGQLISLKEFFIVLGMVGGYGIGSLLVDL  209 (381)
Q Consensus       167 ~~~~~~~~~~~~~-------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  209 (381)
                      ...++.+|..|.+       ++|...++.+....+|..+++.+.+.+.+.
T Consensus       339 ~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~  388 (448)
T PRK09848        339 VMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGL  388 (448)
T ss_pred             HHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999888754       469999999999999999999999887643

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.18  E-value=3.3e-10  Score=102.73  Aligned_cols=172  Identities=20%  Similarity=0.132  Sum_probs=137.8

Q ss_pred             HHHHHHHHhhhcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh--chHHHHH-HH
Q 016882           54 FLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADIL--GRRRELI-LA  130 (381)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--Grk~~l~-~~  130 (381)
                      +..++++++..+..+..+.-..|.+..|.      .|.+..++++..+.+-++...|.++.|+++||+  |||.... +.
T Consensus       254 iW~la~a~vfvYivR~gi~dW~p~YL~e~------k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~  327 (448)
T COG2271         254 IWLLALANVFVYVVRYGINDWGPLYLSEV------KGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIF  327 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHh------cCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHH
Confidence            34556677777778877777777766542      699999999999999999999999999999996  6665444 44


Q ss_pred             HHHHHHHHHHHHHhc--hHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHH-HHHHHHHHHHHhh
Q 016882          131 ALLYLVGALVTALAP--DFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVL-GMVGGYGIGSLLV  207 (381)
Q Consensus       131 ~~~~~~~~~~~~~~~--~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~l~  207 (381)
                      +++..++.+..-.++  |+++..++.++.|+..-+.+-+......|..|++--|++.|+...+..+ |.+.+....+++.
T Consensus       328 ~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~  407 (448)
T COG2271         328 MLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIA  407 (448)
T ss_pred             HHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeE
Confidence            555555555555555  4688888999999987777777788889999999999999999888877 9999999999998


Q ss_pred             cccchhHHHHHhhHHHHHHHHHHHh
Q 016882          208 DLVAGWRYMYGASTPLAVIMGMGMW  232 (381)
Q Consensus       208 ~~~~~w~~~f~i~~~~~~~~~~~~~  232 (381)
                      +.+ ||...|++..+.++++.++++
T Consensus       408 d~~-gW~g~Fi~~~~~a~l~~lll~  431 (448)
T COG2271         408 DTW-GWDGGFIVLSIAALLAILLLL  431 (448)
T ss_pred             ecC-CCcchHHHHHHHHHHHHHHHH
Confidence            886 999999988888777555443

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.18  E-value=5.4e-10  Score=103.30  Aligned_cols=147  Identities=14%  Similarity=0.188  Sum_probs=127.3

Q ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHHH
Q 016882           90 DLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAP  169 (381)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~  169 (381)
                      +.+....|.+.++..+.-++.-.+.+++.+|+|.|+.++++.++..+=.++++++++.+.+.+.+.+.|+-.+.......
T Consensus       255 ~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~f  334 (412)
T PF01306_consen  255 GQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAF  334 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            55677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhCCcccchhHHhHH-HHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHhh-cccc
Q 016882          170 MYIAETAPTPMRGQLISLK-EFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW-LPAS  237 (381)
Q Consensus       170 ~~~~~~~~~~~r~~~~~~~-~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~~-~~~~  237 (381)
                      -|+.+.+|+|..++...+. +....+|..+.+.++|.+.++. |.+..|++.+.+.++..+...+ ++++
T Consensus       335 kYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~-G~~~tylimg~iv~~~~li~~f~l~~~  403 (412)
T PF01306_consen  335 KYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRI-GFQHTYLIMGLIVLPFTLISAFTLKKD  403 (412)
T ss_dssp             HHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred             HHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhc-CcHHHHHHHHHHHHHHHHHheeeecCC
Confidence            9999999999988888884 7899999999999999999998 9999998888887765544444 5443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.17  E-value=5.6e-09  Score=100.78  Aligned_cols=117  Identities=15%  Similarity=0.110  Sum_probs=95.8

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH-----hchHHHHHHHHHHHHHHHhhHhH
Q 016882           92 SSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTAL-----APDFIIMVVGRFVFGIGIGLAMH  166 (381)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~r~l~G~~~g~~~~  166 (381)
                      +....+++.++..++.+++.+++++++||+|+|+.+.++.++.+++.+....     ..+.+.+++..++.|++.+...+
T Consensus       264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~  343 (473)
T PRK10429        264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV  343 (473)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence            4556777778777899999999999999999999999888776666555432     34567777788889999999999


Q ss_pred             HHHHHHHhhCC-------cccchhHHhHHHHHHHHHHHHHHHHHHHhhc
Q 016882          167 AAPMYIAETAP-------TPMRGQLISLKEFFIVLGMVGGYGIGSLLVD  208 (381)
Q Consensus       167 ~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  208 (381)
                      ...++++|..+       ++..|...++.....-+|..+++.+.+.+.+
T Consensus       344 ~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~  392 (473)
T PRK10429        344 LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLG  392 (473)
T ss_pred             HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999965       4555668888999999999999999998875

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.16  E-value=1e-09  Score=103.03  Aligned_cols=142  Identities=12%  Similarity=0.131  Sum_probs=107.8

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHHhhHhHH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTAL-APDFIIMVVGRFVFGIGIGLAMHA  167 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~r~l~G~~~g~~~~~  167 (381)
                      +|.+..+.+++.+...++..++.++.|++.||+|+|+.+.++..+.+++.++... .++.+...++.++.+++.+...+.
T Consensus       230 ~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  309 (382)
T PRK10091        230 SGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLFALSAP  309 (382)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHH
Confidence            6889999999999999999999999999999999999999888887777655543 455566666666777765544443


Q ss_pred             HH-HHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHh
Q 016882          168 AP-MYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMW  232 (381)
Q Consensus       168 ~~-~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~  232 (381)
                      .. ....+..+++.++..  ..+....+|..+||.+++.+.+..++|++.+.+.++++++.+....
T Consensus       310 ~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (382)
T PRK10091        310 LQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLL  373 (382)
T ss_pred             HHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHH
Confidence            33 344444455555544  3467788999999999999998656899999998888776544333

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.15  E-value=1.8e-08  Score=90.36  Aligned_cols=227  Identities=15%  Similarity=0.190  Sum_probs=144.2

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA  168 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~  168 (381)
                      +|++..|++.+....+....+...+.|.++||+|||+.-++..++.+++++ +-..++++.++++|++.|++....+...
T Consensus        64 yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGiaTSLLfS~F  142 (354)
T PF05631_consen   64 YGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGIATSLLFSAF  142 (354)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence            799999999999999999999999999999999999999999999988885 4455789999999999999998887766


Q ss_pred             HHH-HHhh----CCcccchhHHhHHH-HHHHHHHHHHHHHHHHhhcccc-hhHHHHHhhHHHHHHHHHHHhh-cccchhH
Q 016882          169 PMY-IAET----APTPMRGQLISLKE-FFIVLGMVGGYGIGSLLVDLVA-GWRYMYGASTPLAVIMGMGMWW-LPASPRW  240 (381)
Q Consensus       169 ~~~-~~~~----~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~l~~~~~-~w~~~f~i~~~~~~~~~~~~~~-~~~~~~~  240 (381)
                      -++ +.|.    +|++..+...+... ...++-.+.+..++.++.+..+ |-..+|....++.+++.++... -+|.+..
T Consensus       143 EsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~  222 (354)
T PF05631_consen  143 ESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGD  222 (354)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCC
Confidence            444 3443    23333333333222 2334444555556666655441 3477888888877775554432 3443210


Q ss_pred             HHHhhccccCcchhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhhccccccccchhhccccchHHHHHHHHHHHHHH
Q 016882          241 LLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQ  320 (381)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (381)
                                                   ...   ..+.          .+.-+..++.+.++   ++.+.+...+....
T Consensus       223 -----------------------------~~~---~~~~----------~~~~~~a~~~i~~d---~ril~LG~~qslFE  257 (354)
T PF05631_consen  223 -----------------------------TSS---SSSL----------SGSFREAWRAILSD---PRILLLGLIQSLFE  257 (354)
T ss_pred             -----------------------------ccc---ccch----------HHHHHHHHHHHHcC---chhHHHHHHHHHHH
Confidence                                         000   0000          00011223344444   35555566666667


Q ss_pred             hhchhHHHhcHHHHHHHcCCCCCchhHHHHHHHHHHHHHHhHHH
Q 016882          321 ITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKVGSCTLF  364 (381)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~  364 (381)
                      ...+.....|.|.+-.   -+..---+.+..-+.+..++|+.++
T Consensus       258 ~smy~FVflWtPaL~~---~~~~~P~GlIFssFM~a~MlGS~lf  298 (354)
T PF05631_consen  258 GSMYLFVFLWTPALDP---DDEELPLGLIFSSFMVAMMLGSSLF  298 (354)
T ss_pred             HHHHHheeeeeceecC---CCCCCCchHHHHHHHHHHHHHHHHH
Confidence            6766777778887651   1112234555556666667777665

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.15  E-value=1.6e-09  Score=102.47  Aligned_cols=141  Identities=18%  Similarity=0.206  Sum_probs=102.2

Q ss_pred             ccCChhHHHHHHHHHH-HHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH---HHh-chHHHHHHHHHH----HHH
Q 016882           89 YDLSSVEIGLITSGSL-YGALIGSILAFNIADILGRRRELILAALLYLVGALVT---ALA-PDFIIMVVGRFV----FGI  159 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~---~~~-~~~~~~~~~r~l----~G~  159 (381)
                      +|++.++.+++.+... ++..++.+++|++.||+|+|+.+.++.++..+..+..   +.. ++.+.++++.++    .|+
T Consensus       240 ~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~  319 (402)
T PRK11902        240 AGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGGM  319 (402)
T ss_pred             cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence            6899999999986654 5689999999999999999998887776666554433   343 455666655544    445


Q ss_pred             HHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHhhc
Q 016882          160 GIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWL  234 (381)
Q Consensus       160 ~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~~~  234 (381)
                      +.+...+....++.+.+|.+    ..++.+....+|..+++.+++.+.+.. ||+..|.+.++++++.++..+..
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~G~l~~~~-G~~~~f~~~~~~~~~~~~~~~~~  389 (402)
T PRK11902        320 GTAAFVALLMALCNRSFSAT----QYALLSALASVGRVYVGPTSGYLVEAY-GWPGFYLMTVVIALPGLALLWLM  389 (402)
T ss_pred             HHHHHHHHHHHhcCCCCcHH----HHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHH
Confidence            55555666666666666644    455666666778877778899999987 99999999998888766655443

>TIGR01272 gluP glucose/galactose transporter

Probab=99.14  E-value=3.1e-09  Score=96.53  Aligned_cols=175  Identities=15%  Similarity=0.140  Sum_probs=120.6

Q ss_pred             HHhchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhccc-----------
Q 016882          142 ALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV-----------  210 (381)
Q Consensus       142 ~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-----------  210 (381)
                      +...+++.++++-++.|.|.+..++..+.++++..|++++++.+++.+.++++|..++|.+++.+....           
T Consensus         5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~   84 (310)
T TIGR01272         5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA   84 (310)
T ss_pred             HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence            345789999999999999999999999999999999999999999999999999999999999888321           


Q ss_pred             ----chhHHHHHhhHHHHHHHHHHHhhc--ccchhHHHHhhccccCcchhhHHHHHHHHHHHhCCCCCCCChhhHHHHHH
Q 016882          211 ----AGWRYMYGASTPLAVIMGMGMWWL--PASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILT  284 (381)
Q Consensus       211 ----~~w~~~f~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (381)
                          .+|+++|++.+.+.++..+.+.+.  ||.++                 ++.+                    +   
T Consensus        85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~-----------------~~~~--------------------~---  124 (310)
T TIGR01272        85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE-----------------ADVA--------------------R---  124 (310)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc-----------------cccc--------------------c---
Confidence                379999997777665554444443  33210                 0000                    0   


Q ss_pred             hhhhccccccccchhhccccchHHHHHHHHHHHHHHhhchhHHHhcHHHHHHH---cCCCCCchhHHHHHHHHHHHHHHh
Q 016882          285 ELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS---AGFSAASDATRVSILLGLFKVGSC  361 (381)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~i~~  361 (381)
                      .    ..++....++.++++   ..++ ..+..+........+..|.+.++++   .|+ +.+++...........++|.
T Consensus       125 ~----~~~~~~~~~~~~~~~---~~~l-~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~-s~~~a~~~~s~~~~~~~iGr  195 (310)
T TIGR01272       125 V----SSGDTTQKTSAFQFT---HLVL-GALGIFVYVGAEVSAGSFLVNFLSDPHALGL-PEDQAAHFTAYTWGGAMVGR  195 (310)
T ss_pred             c----ccccccchhhHHhhH---HHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcccCCC-CHHHHHHHHHHHHHHHHHHH
Confidence            0    000000111233322   2233 3344444444456777888888864   377 67777888888888888888


Q ss_pred             HHHH
Q 016882          362 TLFF  365 (381)
Q Consensus       362 ~~~~  365 (381)
                      +++-
T Consensus       196 ~~~~  199 (310)
T TIGR01272       196 FIGS  199 (310)
T ss_pred             HHHH
Confidence            8755

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.14  E-value=3.2e-10  Score=107.44  Aligned_cols=135  Identities=18%  Similarity=0.125  Sum_probs=97.0

Q ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHH-HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHH
Q 016882           90 DLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRE-LILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA  168 (381)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~  168 (381)
                      +.+..+.+++.+...++..++.++.|+++||++||+. +....++..++..+.....+....+++-.+.+++.....+..
T Consensus       275 ~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  354 (412)
T TIGR02332       275 GSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIF  354 (412)
T ss_pred             CCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHH
Confidence            6677889999999999999999999999999997764 334443444333222222232222222223333333333444


Q ss_pred             HHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHH
Q 016882          169 PMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLA  224 (381)
Q Consensus       169 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~  224 (381)
                      .....|.+|+++|+.++|+.+....+|..++|.+.+.+.+..++|++.|++.++..
T Consensus       355 ~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~~  410 (412)
T TIGR02332       355 WTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAALL  410 (412)
T ss_pred             HhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHHH
Confidence            55557889999999999999999999999999999999998767999988777654

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.14  E-value=3.1e-09  Score=100.06  Aligned_cols=137  Identities=15%  Similarity=0.119  Sum_probs=110.6

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA  168 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~  168 (381)
                      +|++..+.+++...+.++..++.++.+++.||.+++..+....+......++....++.+.+.+..++.|++.+...+..
T Consensus       247 ~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~~~~~~~  326 (394)
T PRK10213        247 AGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGW  326 (394)
T ss_pred             cCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhHHH
Confidence            68899999999999999999999999999999654443443333334444444556678888888999999999999999


Q ss_pred             HHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHH
Q 016882          169 PMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIM  227 (381)
Q Consensus       169 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~  227 (381)
                      .+++.+..| +++++..++......+|..+|+.+++.+.+.. |++..++..+++.++.
T Consensus       327 ~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~-g~~~~~~~~~~~~~~~  383 (394)
T PRK10213        327 STWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNI-GLTSPLMLSGTLMLLT  383 (394)
T ss_pred             HHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ChhhHHHHHHHHHHHH
Confidence            989999887 55678888888889999999999999999987 8888888877765544

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.14  E-value=1.3e-09  Score=116.57  Aligned_cols=138  Identities=21%  Similarity=0.247  Sum_probs=119.1

Q ss_pred             ccCChh-HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHH
Q 016882           89 YDLSSV-EIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHA  167 (381)
Q Consensus        89 ~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~  167 (381)
                      +|.+.. +.+++.++..++.++++++.|++.||+++++.+.++.++.+++.++..+..+.+.++++.++.|++.+...+.
T Consensus       263 ~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  342 (1146)
T PRK08633        263 LGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVP  342 (1146)
T ss_pred             hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Confidence            688888 9999999999999999999999999999999999888888888888888888888889999999999998889


Q ss_pred             HHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHH
Q 016882          168 APMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVI  226 (381)
Q Consensus       168 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~  226 (381)
                      ..+++.+..|++.||+++++.+....+|.++++.+++.+.....++...|++.+.+.++
T Consensus       343 ~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  401 (1146)
T PRK08633        343 LNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLI  401 (1146)
T ss_pred             HHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999888888777654322566666666555444

>TIGR00896 CynX cyanate transporter

Probab=99.13  E-value=1.2e-09  Score=101.41  Aligned_cols=126  Identities=20%  Similarity=0.171  Sum_probs=101.5

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-chHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADIL-GRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHA  167 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~  167 (381)
                      .|.+..+.+.+.++..++.++++++.|++.||+ +||+.+.++..+.+++.++..+.++.+... ...+.|++.|...+.
T Consensus       227 ~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~~g~~~~~  305 (355)
T TIGR00896       227 HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLGLGQGGAFPL  305 (355)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHhhhhHhHH
Confidence            688899999999999999999999999999999 567777777777777777666655433222 456789999988888


Q ss_pred             HHHHHHhhCC-cccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHH
Q 016882          168 APMYIAETAP-TPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRY  215 (381)
Q Consensus       168 ~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~  215 (381)
                      ..+.+.+..+ +++++...++.+....+|..++|.+.+.+.++.++|.+
T Consensus       306 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~~~~  354 (355)
T TIGR00896       306 ALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGNWLM  354 (355)
T ss_pred             HHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence            7777765554 56778999999988899999999999999988755643

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=99.13  E-value=2.9e-09  Score=92.24  Aligned_cols=161  Identities=19%  Similarity=0.144  Sum_probs=124.0

Q ss_pred             ccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHh---
Q 016882           68 IGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALA---  144 (381)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~---  144 (381)
                      ....+...|++++.       +|+|.+|...+.+...+|..+ +++.|.+.|++|++.++.+|.+...++..+...+   
T Consensus        18 ~Y~Fs~yS~~Lk~~-------l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~   89 (250)
T PF06813_consen   18 TYTFSAYSPQLKSR-------LGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSG   89 (250)
T ss_pred             ccchhhhhHHHHHH-------hCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            34455566777776       899999999999999999987 4889999999999999999999999988877663   


Q ss_pred             ----chHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhh
Q 016882          145 ----PDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGAS  220 (381)
Q Consensus       145 ----~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~  220 (381)
                          .++|.+.+..++.|.+.+...........+.|| ++||++.|+.-...++++.+-..+...+.+.. .-...+...
T Consensus        90 ~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~-~~~fll~la  167 (250)
T PF06813_consen   90 RIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDD-PSSFLLFLA  167 (250)
T ss_pred             ccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCC-hHHHHHHHH
Confidence                357888888888888777666666666778998 58999999999999999988888877776653 334444444


Q ss_pred             HHHHHHHHHHHhhcccch
Q 016882          221 TPLAVIMGMGMWWLPASP  238 (381)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~  238 (381)
                      ..+.+++++..++++..|
T Consensus       168 ~~~~~v~l~~~~~vr~~~  185 (250)
T PF06813_consen  168 VLPAVVCLVAMFFVRPVP  185 (250)
T ss_pred             HHHHHHHHHHhhheeccC
Confidence            444455555656655433

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.11  E-value=2.2e-09  Score=101.36  Aligned_cols=141  Identities=16%  Similarity=0.093  Sum_probs=111.3

Q ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHH
Q 016882           90 DLSSVEIGLITSGSLYGALIGSILAFNIAD-ILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA  168 (381)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~  168 (381)
                      +.++.+.+++.++..++...+..+.+++.| |++.++.+..+..+.+++.++.+..++++.+.+...+.|++.+...+..
T Consensus       239 ~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~  318 (400)
T PRK11646        239 AGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAEPAR  318 (400)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHccH
Confidence            346678888888887777666666666665 5676777778888888888778888888888888888999988888898


Q ss_pred             HHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccc--h-hHHHHHhhHHHHHHHHHH
Q 016882          169 PMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVA--G-WRYMYGASTPLAVIMGMG  230 (381)
Q Consensus       169 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~--~-w~~~f~i~~~~~~~~~~~  230 (381)
                      .+++.+..|+++||+.+++.+....+|..+||.+++.+.+..+  + ....+++.++++++..+.
T Consensus       319 ~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (400)
T PRK11646        319 ETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLA  383 (400)
T ss_pred             HHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999987642  2 345555555555554443

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.11  E-value=3.8e-08  Score=94.21  Aligned_cols=234  Identities=17%  Similarity=0.113  Sum_probs=153.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH-HHHHHHHHHHHHh--chHHHHHHHHHHHHHHHhhHhHHHH
Q 016882           93 SVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAA-LLYLVGALVTALA--PDFIIMVVGRFVFGIGIGLAMHAAP  169 (381)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~-~~~~~~~~~~~~~--~~~~~~~~~r~l~G~~~g~~~~~~~  169 (381)
                      .+..++..++..+..++..|+.|.++|+-|+||.++... .+..+++.++.+.  .+++...+..++.-++.+......+
T Consensus        69 ~s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyn  148 (477)
T PF11700_consen   69 SSLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYN  148 (477)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677889999999999999999999998777666544 4444555555553  3466666677777788999999999


Q ss_pred             HHHHhhCCcccc--------------------------hhHHhHHHHHHHHHHHHHHHHHHHhhccc-------chhHHH
Q 016882          170 MYIAETAPTPMR--------------------------GQLISLKEFFIVLGMVGGYGIGSLLVDLV-------AGWRYM  216 (381)
Q Consensus       170 ~~~~~~~~~~~r--------------------------~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-------~~w~~~  216 (381)
                      +++.|+.+++.+                          ++..+.-.....+|+++.-.+.-.+....       .+-|..
T Consensus       149 a~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~  228 (477)
T PF11700_consen  149 AYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVA  228 (477)
T ss_pred             HHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHH
Confidence            999999999998                          89999988888888888777766654322       235888


Q ss_pred             HHhhHHHHHH-HHHHHhhcccchhHHHHhhccccCcchhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhhccccccc
Q 016882          217 YGASTPLAVI-MGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEV  295 (381)
Q Consensus       217 f~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (381)
                      +.+.++..++ .+...+++|+.|+..   + .++..     .-.+...++                           -..
T Consensus       229 ~~~~a~ww~vfsiP~~~~~~~~~~~~---~-~~~~~-----~~~~~g~~~---------------------------l~~  272 (477)
T PF11700_consen  229 FLIVALWWLVFSIPLFLWLPDRPGPR---P-LPSGS-----SYLRFGFKR---------------------------LWR  272 (477)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCCCC---C-CCcch-----hHHHHHHHH---------------------------HHH
Confidence            8888887665 445556677765410   0 00000     000000000                           012


Q ss_pred             cchhhccccchHHHHHHHHHHHHHHhhchhHHHhcHHHHHH-HcCCCCCchhHHHHHHHHHHHHHHhHHHHHH
Q 016882          296 SLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQ-SAGFSAASDATRVSILLGLFKVGSCTLFFMS  367 (381)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~  367 (381)
                      +++++.+.|   .+.. ..+.++...-+++.+......+.+ +.|+ +..+......+..+.+++|++++...
T Consensus       273 t~k~~~~~~---~~~~-fLia~~l~~dg~~ti~~~~~i~a~~~lg~-s~~~l~~~~l~~~i~a~~Ga~~~g~l  340 (477)
T PF11700_consen  273 TFKEIRKLR---QLFL-FLIAYFLYSDGVNTIISFAGIYATEVLGM-STTQLIVFGLVVQIVAIIGALLFGWL  340 (477)
T ss_pred             HHHHHHhCh---HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCc-CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            223332222   2222 333333344556666666666665 6799 77888888888999999999987655

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.10  E-value=7.1e-09  Score=96.98  Aligned_cols=149  Identities=22%  Similarity=0.210  Sum_probs=120.1

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHh----hch-HHHHHHHHHHHHHHHHHHHHhch------HHHHHHHHHHH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADI----LGR-RRELILAALLYLVGALVTALAPD------FIIMVVGRFVF  157 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~Gr-k~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~r~l~  157 (381)
                      +|+++..+|.+..+.=+.-++.-|+.|.+.||    +|| |+.++.+.+..++.+.++..+++      ....++...+.
T Consensus        43 ~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~  122 (467)
T COG2211          43 FGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLL  122 (467)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHH
Confidence            79999999999999999999999999999995    775 56677788888888888877663      45566778889


Q ss_pred             HHHHhhHhHHHHHHHHhhCC-cccchhHHhHHHHHHHHHHHHHHHHHHHhhcc------cchhHHHHHhhHHHHHHHHHH
Q 016882          158 GIGIGLAMHAAPMYIAETAP-TPMRGQLISLKEFFIVLGMVGGYGIGSLLVDL------VAGWRYMYGASTPLAVIMGMG  230 (381)
Q Consensus       158 G~~~g~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~------~~~w~~~f~i~~~~~~~~~~~  230 (381)
                      +++.........++.+|+.+ +++|.+..+.-+.+..+|.++...+..++...      ..||+...++.++++++..+.
T Consensus       123 ~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~  202 (467)
T COG2211         123 GLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLF  202 (467)
T ss_pred             HHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence            99999888888889999884 69999999999999999987777776666631      337888888888887776655


Q ss_pred             Hhh-cccc
Q 016882          231 MWW-LPAS  237 (381)
Q Consensus       231 ~~~-~~~~  237 (381)
                      .++ .+|.
T Consensus       203 ~~~~v~ER  210 (467)
T COG2211         203 CFFNVKER  210 (467)
T ss_pred             HHHHhhcc
Confidence            554 5554

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.10  E-value=8e-10  Score=106.50  Aligned_cols=146  Identities=13%  Similarity=0.076  Sum_probs=102.2

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHH--------HHHHHHHH--HHHHHHHHH-hchHHHHHHHHHHH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRE--------LILAALLY--LVGALVTAL-APDFIIMVVGRFVF  157 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~--------l~~~~~~~--~~~~~~~~~-~~~~~~~~~~r~l~  157 (381)
                      +|.+..+.+++.++..++..++.++.|+++||+++|+.        +..+....  .+..+.... ..+....+++-.+.
T Consensus       292 ~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  371 (465)
T TIGR00894       292 LRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLA  371 (465)
T ss_pred             hCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence            68899999999999999999999999999999875421        11111111  111111122 23444444555555


Q ss_pred             HHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhccc--chhHHHHHhhHHHHHHHHHHHhhcc
Q 016882          158 GIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV--AGWRYMYGASTPLAVIMGMGMWWLP  235 (381)
Q Consensus       158 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~--~~w~~~f~i~~~~~~~~~~~~~~~~  235 (381)
                      +.+.+...+.......|..|+ .+|.+.++.+....+|..++|.+.+.+.+..  ++|+..|.+.++..++..+...+.+
T Consensus       372 ~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~  450 (465)
T TIGR00894       372 NAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLIFG  450 (465)
T ss_pred             HHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeeeee
Confidence            655555555555556677764 8999999999999999999999999887643  3699999999888887666555543

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.10  E-value=5.5e-09  Score=96.68  Aligned_cols=141  Identities=17%  Similarity=0.232  Sum_probs=89.9

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH---HHHHHHHHh----chHH-HHHHHHHHHHHH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYL---VGALVTALA----PDFI-IMVVGRFVFGIG  160 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~---~~~~~~~~~----~~~~-~~~~~r~l~G~~  160 (381)
                      .|++.+++|.+.++..+...+.+++.|.++||+|.||-++.......   ...+...+.    .|.+ ..+++-...|++
T Consensus        38 ~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~  117 (412)
T PF01306_consen   38 AGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLV  117 (412)
T ss_dssp             H---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTT
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            59999999999999999999999999999999997666554332222   122222221    2332 223333444555


Q ss_pred             HhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHhh
Q 016882          161 IGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW  233 (381)
Q Consensus       161 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~~  233 (381)
                      .....++.-+++.++.  ++.+.=.|=.-.+.++|-+++..++|.+.+.  +-+..||+..+..++..++.++
T Consensus       118 f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i--~p~~~fwi~s~~~~il~lll~~  186 (412)
T PF01306_consen  118 FNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNI--NPNIIFWIASAAAIILLLLLLL  186 (412)
T ss_dssp             TTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeee--CccHHHHHHHHHHHHHHHHHHH
Confidence            5555666666655543  3345555566778899999999999998864  5678888877766655444444

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.09  E-value=5.9e-09  Score=97.65  Aligned_cols=128  Identities=19%  Similarity=0.331  Sum_probs=97.6

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHh-----chHHHHHHHHHHHHHHHhh
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALA-----PDFIIMVVGRFVFGIGIGL  163 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~r~l~G~~~g~  163 (381)
                      +|.++.+.+++.+...++..++.++.|++.||+|+|+.+..+..+..++.++....     ++...+.+..++.|++.+.
T Consensus       237 ~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  316 (385)
T TIGR00710       237 MGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGNSM  316 (385)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence            68899999999999999999999999999999999999988887777766665543     2344556667788999998


Q ss_pred             HhHHHHHHHHhhCCcccchhHHhHHHHHHHH-HHHHHHHHHHHhhcccchhHHHHHh
Q 016882          164 AMHAAPMYIAETAPTPMRGQLISLKEFFIVL-GMVGGYGIGSLLVDLVAGWRYMYGA  219 (381)
Q Consensus       164 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~w~~~f~i  219 (381)
                      ..+.......|..| ++|+++.++.+..... |...++.++ .+.+.. +|...+..
T Consensus       317 ~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~-~~~~~~-~~~~~~~~  370 (385)
T TIGR00710       317 ISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS-LIHGNT-AWPMSLSC  370 (385)
T ss_pred             HHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH-hccccC-hHHHHHHH
Confidence            88888888889887 6789999998766654 555555544 443332 45444433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.09  E-value=9.8e-09  Score=97.14  Aligned_cols=137  Identities=17%  Similarity=0.161  Sum_probs=109.2

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHh-----chHHHHHHHHHHHHHHHhh
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALA-----PDFIIMVVGRFVFGIGIGL  163 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~r~l~G~~~g~  163 (381)
                      +|.++.+.++......++..++.++.|++.||+|+|+.+.++.++..++.++....     ++.+.++++.++.|++.+.
T Consensus       246 ~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~  325 (406)
T PRK15402        246 EQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGL  325 (406)
T ss_pred             hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHH
Confidence            68889999998888888999999999999999999999998888777766666543     3566677888899999888


Q ss_pred             HhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHH
Q 016882          164 AMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIM  227 (381)
Q Consensus       164 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~  227 (381)
                      ..+......... ++++||+..++.+....+|..+|+.+++.+.+.. ++....+..++..++.
T Consensus       326 ~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~~~~~~~~~~~~~~~~  387 (406)
T PRK15402        326 ANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGG-GNGLFNLFNLANGLLW  387 (406)
T ss_pred             HhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccCC-chHHHHHHHHHHHHHH
Confidence            777666655443 4589999999999999999999999999998876 5555444444444443

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.09  E-value=9.5e-09  Score=96.36  Aligned_cols=148  Identities=22%  Similarity=0.274  Sum_probs=118.6

Q ss_pred             cc-CChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHh-chHHHHH----HHHHHHHHHHh
Q 016882           89 YD-LSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALA-PDFIIMV----VGRFVFGIGIG  162 (381)
Q Consensus        89 ~~-~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~-~~~~~~~----~~r~l~G~~~g  162 (381)
                      .| .+....+.+.++..+.-++.-...+++..|+|.|+++.++.+.+++=..+.+.. ++.+...    +...+.|+..+
T Consensus       237 ~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~  316 (400)
T PF03825_consen  237 LGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFG  316 (400)
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHH
Confidence            45 667778888888888889999999999999999999999999999988888887 4544333    34567999999


Q ss_pred             hHhHHHHHHHHhhCCcccchhHHhHHHH-HHHHHHHHHHHHHHHhhcccc-----hhHHHHHhhHHHHHHHHHHHh-hcc
Q 016882          163 LAMHAAPMYIAETAPTPMRGQLISLKEF-FIVLGMVGGYGIGSLLVDLVA-----GWRYMYGASTPLAVIMGMGMW-WLP  235 (381)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~~~~~l~~~~~-----~w~~~f~i~~~~~~~~~~~~~-~~~  235 (381)
                      ........|+.+..|++.|+++.++++. ..++|..+|..++|++.+..+     .|...+.+.+++.++..++.+ +++
T Consensus       317 ~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk  396 (400)
T PF03825_consen  317 LFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFK  396 (400)
T ss_pred             HHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            9999999999999999999999999865 678999999999999998651     344555666666555444333 344


Q ss_pred             c
Q 016882          236 A  236 (381)
Q Consensus       236 ~  236 (381)
                      |
T Consensus       397 ~  397 (400)
T PF03825_consen  397 P  397 (400)
T ss_pred             C
Confidence            4

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.07  E-value=2.3e-09  Score=114.52  Aligned_cols=138  Identities=19%  Similarity=0.063  Sum_probs=115.3

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHh--------------------chHH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALA--------------------PDFI  148 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~--------------------~~~~  148 (381)
                      +|.+..+.+++.+++.++.++++++.|+++++.++++.+..+.++.+++.+..++.                    .+.+
T Consensus       256 ~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (1140)
T PRK06814        256 LGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGW  335 (1140)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccH
Confidence            68899999999999999999999999999998887777666666665555544442                    6778


Q ss_pred             HHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHH
Q 016882          149 IMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVI  226 (381)
Q Consensus       149 ~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~  226 (381)
                      .++++.++.|++.+...+...+++.+.+|++.||+++|+.+....+|..+++.+.+.+.....++...+++.+++.++
T Consensus       336 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~  413 (1140)
T PRK06814        336 RILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALANLI  413 (1140)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence            888889999999999999999999999999999999999999999999999999998875433777777666655444

>PRK09848 glucuronide transporter; Provisional

Probab=99.07  E-value=7e-09  Score=99.46  Aligned_cols=117  Identities=10%  Similarity=0.102  Sum_probs=79.9

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh----chHHHH-HHHHHHHHHHHHHHH-Hh----c--hHHHHHHHHHH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADIL----GRRREL-ILAALLYLVGALVTA-LA----P--DFIIMVVGRFV  156 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~----Grk~~l-~~~~~~~~~~~~~~~-~~----~--~~~~~~~~r~l  156 (381)
                      +|++..++|.+.++..+..++..++.|+++||.    |||+.+ .++.+...+..++.. ..    +  ..+..++...+
T Consensus        39 ~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (448)
T PRK09848         39 AGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYMG  118 (448)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHHH
Confidence            699999999999999999999999999999996    766644 555554444444332 11    1  22334455567


Q ss_pred             HHHHHhhHhHHHHHHHHhhCC-cccchhHHhHHHHHHH-----HHHHHHHHHHHH
Q 016882          157 FGIGIGLAMHAAPMYIAETAP-TPMRGQLISLKEFFIV-----LGMVGGYGIGSL  205 (381)
Q Consensus       157 ~G~~~g~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~-----~g~~~~~~~~~~  205 (381)
                      .+++.+...+...++..+..+ +++|....++-..+..     ++..++|.++..
T Consensus       119 ~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~  173 (448)
T PRK09848        119 LGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNS  173 (448)
T ss_pred             HHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            788888888777777777664 4678887766554433     444555555543

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.04  E-value=6e-10  Score=99.00  Aligned_cols=131  Identities=18%  Similarity=0.190  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchh
Q 016882          104 LYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQ  183 (381)
Q Consensus       104 ~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~  183 (381)
                      .+.-..|.++.+++.||+|||+++....++.+++.++...+.+.....+.-+..-++..+.+...++|..|.+|.+.|+.
T Consensus       391 slaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRat  470 (528)
T KOG0253|consen  391 SLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRAT  470 (528)
T ss_pred             HHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhc
Confidence            34566788999999999999999999999999999988887654444444444444455556667889999999999999


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHhhcccc
Q 016882          184 LISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPAS  237 (381)
Q Consensus       184 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~  237 (381)
                      +.|.-.....+|+.+.|.++ ...+.  +-..+..+.+.++++..+...++|-.
T Consensus       471 gvGtcSsmaRIggI~~p~iA-~~~e~--s~sl~i~vy~~~~ilagIavcffPiE  521 (528)
T KOG0253|consen  471 GVGTCSSMARIGGIFSPVIA-MRAEL--STSLPIFVYGALFILAGIAVCFFPIE  521 (528)
T ss_pred             chhhhhhHHhhhhhhhhHHH-HHhcc--ceeehHHHHHHHHHHHHHHheeeeec
Confidence            99999999999999999999 33332  23355566677777777777777643

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.03  E-value=1.2e-08  Score=96.18  Aligned_cols=135  Identities=17%  Similarity=0.113  Sum_probs=107.3

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA  168 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~  168 (381)
                      +|.++.+.|++.+...++..+++++.+++.||.++|+.+..+.. .++......+.++++...+..++.|++.+...+..
T Consensus       236 lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~~  314 (393)
T PRK11195        236 LGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQHSLLPAYPLLILIGALGGFFVVPM  314 (393)
T ss_pred             cCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhH
Confidence            68899999999999999999999999999999999988887753 34444455566777777788889999998888888


Q ss_pred             HHHHHhhCCccc-chhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHH
Q 016882          169 PMYIAETAPTPM-RGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVI  226 (381)
Q Consensus       169 ~~~~~~~~~~~~-r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~  226 (381)
                      .+.+.+..|++. +|++.++.+....+|..++..+.+.+...  |-+..+++.+...++
T Consensus       315 ~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  371 (393)
T PRK11195        315 NALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKL--GVPVVAVIVGFGLLV  371 (393)
T ss_pred             HHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHH
Confidence            888888766654 79999999999999999999999876443  445544444433333

>PRK09669 putative symporter YagG; Provisional

Probab=99.03  E-value=3.7e-08  Score=94.34  Aligned_cols=116  Identities=13%  Similarity=0.194  Sum_probs=92.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH--hchHHHHHHHHHHHHHHHhhHhHHHHHH
Q 016882           94 VEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTAL--APDFIIMVVGRFVFGIGIGLAMHAAPMY  171 (381)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~r~l~G~~~g~~~~~~~~~  171 (381)
                      +..+.+.....+...++.+++++++||+|+|+.+.++.++.+++.....+  .++.+.+++..++.|++.+...+...++
T Consensus       264 ~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am  343 (444)
T PRK09669        264 DLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSM  343 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455666677888899999999999999999999887766654443333  3567778888899999999999999999


Q ss_pred             HHhhCC-------cccchhHHhHHHHHHHHHHHHHHHHHHHhhcc
Q 016882          172 IAETAP-------TPMRGQLISLKEFFIVLGMVGGYGIGSLLVDL  209 (381)
Q Consensus       172 ~~~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  209 (381)
                      ++|..+       ++..|...++......+|..+++.+++.+.+.
T Consensus       344 ~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~  388 (444)
T PRK09669        344 FSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAW  388 (444)
T ss_pred             HHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999875       34456778888999999999999999988764

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.03  E-value=5.9e-09  Score=100.93  Aligned_cols=121  Identities=19%  Similarity=0.265  Sum_probs=107.0

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH----hchHHHHHHHHHHHHHHHhhH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTAL----APDFIIMVVGRFVFGIGIGLA  164 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~r~l~G~~~g~~  164 (381)
                      +|.++.+.+++.....++..++.++.|++.||+|||+.+.++..+.+++..+..+    ..+++.+....++.|++.+..
T Consensus       286 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~  365 (485)
T TIGR00711       286 LGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCF  365 (485)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            6889999999999999999999999999999999999999998888888777663    235667777788999999988


Q ss_pred             hHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcc
Q 016882          165 MHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDL  209 (381)
Q Consensus       165 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  209 (381)
                      .+.......+..|+++|+.+.++.+....+|..+|+.+.+.+.++
T Consensus       366 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       366 FMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTN  410 (485)
T ss_pred             HHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            877788888889999999999999999999999999999988764

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.02  E-value=1.1e-09  Score=99.32  Aligned_cols=145  Identities=18%  Similarity=0.113  Sum_probs=119.8

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHh-------chHHHHHHHHHHHHHHH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALA-------PDFIIMVVGRFVFGIGI  161 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~r~l~G~~~  161 (381)
                      |+.++.+.+.+...+.+...+..+.+|+++||+|.++++.+.....+++..+.++.       .+....++..+..+++.
T Consensus       249 fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~  328 (417)
T COG2223         249 FGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFA  328 (417)
T ss_pred             cCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHh
Confidence            79999999999999999999999999999999999999999988888888877775       34444444455555555


Q ss_pred             hhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHhhc
Q 016882          162 GLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWL  234 (381)
Q Consensus       162 g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~~~  234 (381)
                      |.....+..++..++|+ +-|.+.|+.....++|+..-|..-+...+..+.++..|++...+.+++.+..+..
T Consensus       329 G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~  400 (417)
T COG2223         329 GLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWAL  400 (417)
T ss_pred             ccCcchheeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555666677778874 7799999999999999999999999999888679999999999988877766543

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.01  E-value=1.3e-08  Score=94.82  Aligned_cols=151  Identities=19%  Similarity=0.077  Sum_probs=102.2

Q ss_pred             ccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhch---HHHHHH-HHHHHHHHHHHHHHhchH
Q 016882           72 SCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGR---RRELIL-AALLYLVGALVTALAPDF  147 (381)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Gr---k~~l~~-~~~~~~~~~~~~~~~~~~  147 (381)
                      ...+|++.++       .|.+.. .+...++..+...++   .++++||..|   |+.... ..++.++.....+...+.
T Consensus       212 ~~wlp~~L~~-------~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~  280 (368)
T TIGR00903       212 AIWLEAALRP-------AGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNR  280 (368)
T ss_pred             HHHHHHHHHH-------CCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHcccc
Confidence            3456666654       466654 566655555555554   4677777654   333332 333334444444444444


Q ss_pred             HHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHH
Q 016882          148 IIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIM  227 (381)
Q Consensus       148 ~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~  227 (381)
                      ...+++-.+.|++.....+...++.+|.+|++.|+++.|+.+....+|+.++|.+.+.+..   +-+..|.+.+++.++.
T Consensus       281 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~---~~~~~f~~~~~~~~i~  357 (368)
T TIGR00903       281 LALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS---SAEAYFTFLAILITIA  357 (368)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHH
Confidence            4555566677777777778788999999999999999999999999999999999988773   5667777777777776


Q ss_pred             HHHHhhccc
Q 016882          228 GMGMWWLPA  236 (381)
Q Consensus       228 ~~~~~~~~~  236 (381)
                      .+..+++++
T Consensus       358 ~~~~~~~~~  366 (368)
T TIGR00903       358 FAIALLLPN  366 (368)
T ss_pred             HHHHHhCCC
Confidence            555544454

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00901 2A0125 AmpG-related permease

Probab=98.98  E-value=6.4e-09  Score=96.56  Aligned_cols=105  Identities=15%  Similarity=0.191  Sum_probs=90.0

Q ss_pred             ccCChhHHHHHHHHHH-HHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHh-----------chHHHHHHHHHH
Q 016882           89 YDLSSVEIGLITSGSL-YGALIGSILAFNIADILGRRRELILAALLYLVGALVTALA-----------PDFIIMVVGRFV  156 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~-----------~~~~~~~~~r~l  156 (381)
                      +|.+..+.+.+.++.. ++..++.+++|++.||+|||+.+..+.++.+++..+..+.           ++.+.+..+.++
T Consensus       239 ~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  318 (356)
T TIGR00901       239 MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITL  318 (356)
T ss_pred             cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHH
Confidence            6889999998887765 6788999999999999999999998888877766655443           456778888899


Q ss_pred             HHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHH
Q 016882          157 FGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIV  193 (381)
Q Consensus       157 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  193 (381)
                      .+++.+...+...+++.|.+|+++||+.+++.+...+
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       319 EAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            9999999999999999999999999999999877654

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.98  E-value=8.8e-09  Score=97.45  Aligned_cols=136  Identities=10%  Similarity=-0.003  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH-Hh-----chHHHHHHHHHHHHHHHhhHhHHHHHHH
Q 016882           99 ITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTA-LA-----PDFIIMVVGRFVFGIGIGLAMHAAPMYI  172 (381)
Q Consensus        99 ~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~-~~-----~~~~~~~~~r~l~G~~~g~~~~~~~~~~  172 (381)
                      ...+..+...+..+++|+++||+|+|+++.++.++..++..... ..     .+++.+.+..+...++.|........++
T Consensus       291 ~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~i  370 (462)
T PRK15034        291 LAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMI  370 (462)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhh
Confidence            34455678889999999999999999999988887776654322 22     2466666655555555565666666677


Q ss_pred             HhhCCc---------------------ccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHH
Q 016882          173 AETAPT---------------------PMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGM  231 (381)
Q Consensus       173 ~~~~~~---------------------~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~  231 (381)
                      .+++|+                     ++-|.+.|+......+|+.+.|.+-+...+..+++...|++..+..++++++.
T Consensus       371 p~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~  450 (462)
T PRK15034        371 AVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLT  450 (462)
T ss_pred             HHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHH
Confidence            777774                     25678889999999999999998888888877789999999999988877766


Q ss_pred             hhc
Q 016882          232 WWL  234 (381)
Q Consensus       232 ~~~  234 (381)
                      ++.
T Consensus       451 w~~  453 (462)
T PRK15034        451 WLV  453 (462)
T ss_pred             HHH
Confidence            653

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.97  E-value=6e-09  Score=96.16  Aligned_cols=112  Identities=31%  Similarity=0.440  Sum_probs=98.6

Q ss_pred             ccCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHh---chHHHHHHHHHHHHHHHhhH
Q 016882           89 YDLS-SVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALA---PDFIIMVVGRFVFGIGIGLA  164 (381)
Q Consensus        89 ~~~~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~r~l~G~~~g~~  164 (381)
                      +|.+ ..+.+++.++..++..++.++.|++.||+|+|+.+.+......+..+.....   ++....++..++.|++.+..
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  316 (352)
T PF07690_consen  237 LGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIV  316 (352)
T ss_dssp             HHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            7888 7899999999999999999999999999999888877777776666655543   35577777888999999999


Q ss_pred             hHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHH
Q 016882          165 MHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGY  200 (381)
Q Consensus       165 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~  200 (381)
                      .+....++.|..|+++||++.++.+....+|..++|
T Consensus       317 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  317 FPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             CHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            999999999999999999999999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK10133 L-fucose transporter; Provisional

Probab=98.97  E-value=2.9e-08  Score=94.83  Aligned_cols=139  Identities=9%  Similarity=-0.033  Sum_probs=111.3

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA  168 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~  168 (381)
                      +|+++.+.++..+.+.++..++.++.+++.||+|+|+++..+.++..++.++..+.++.+ .+..-.+.|++.+..+|..
T Consensus       290 ~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~glg~~~i~P~~  368 (438)
T PRK10133        290 PGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCSAFMSIQYPTI  368 (438)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHHHHHH
Confidence            699999999999999999999999999999999999999988877777666666655543 3456678999999999999


Q ss_pred             HHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHH
Q 016882          169 PMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMG  230 (381)
Q Consensus       169 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~  230 (381)
                      .+...+..|+ +.+.+.++... ..+|..++|++.+.+.+..++-|..|++..+..+..+..
T Consensus       369 ~s~a~~~~~~-~~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~~  428 (438)
T PRK10133        369 FSLGIKNLGQ-DTKYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF  428 (438)
T ss_pred             HHHHHcccch-hhccchhHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence            9999998875 46777887764 446888888999998887622788887666655544433

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.96  E-value=1e-08  Score=99.66  Aligned_cols=121  Identities=18%  Similarity=0.085  Sum_probs=107.1

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHh---chHHHHHHHHHHHHHHHhhHh
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALA---PDFIIMVVGRFVFGIGIGLAM  165 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~r~l~G~~~g~~~  165 (381)
                      +|.++.+.++......++..++.++.|++.||+|+|+.+..+.++..++.++....   ++.+...+..++.|+|.|...
T Consensus       290 ~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~  369 (495)
T PRK14995        290 HGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASAL  369 (495)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHH
Confidence            58899999999999999999999999999999999999998888887776655442   356666778899999999998


Q ss_pred             HHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcc
Q 016882          166 HAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDL  209 (381)
Q Consensus       166 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  209 (381)
                      +.....+.+..|+++++.+.++.+....+|..+|+.+.+.+.+.
T Consensus       370 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~  413 (495)
T PRK14995        370 LASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLSR  413 (495)
T ss_pred             HHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888999999999999999999999999999999999988643

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.96  E-value=2.4e-08  Score=94.05  Aligned_cols=129  Identities=16%  Similarity=0.170  Sum_probs=89.5

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA  168 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~  168 (381)
                      +|.+..+.+.+.+...++..++.++.+++.||+|||+.+.++..+..++.+...+.++.+..+++-.+.+.|.+...+. 
T Consensus       234 ~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~-  312 (392)
T PRK10473        234 MGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVGFGV-  312 (392)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-
Confidence            6889999999999999999999999999999999999999999888888887777666555555555555554444333 


Q ss_pred             HHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHH
Q 016882          169 PMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPL  223 (381)
Q Consensus       169 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~  223 (381)
                       ....+..|.++|+   +.......++..+++.+++++.+.. |+.....+.+.+
T Consensus       313 -~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~-g~~~~~~~~~~~  362 (392)
T PRK10473        313 -AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVL-GISAWNMLIGIL  362 (392)
T ss_pred             -HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHH
Confidence             3334555655543   3333445566666666666666554 555444444443

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.94  E-value=1.6e-08  Score=96.42  Aligned_cols=115  Identities=21%  Similarity=0.255  Sum_probs=104.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhc--hHHHHHHHHHHHHHHHhhHhHHHHHH
Q 016882           94 VEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAP--DFIIMVVGRFVFGIGIGLAMHAAPMY  171 (381)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~r~l~G~~~g~~~~~~~~~  171 (381)
                      ...+.+..+..++..++.+++++++||+|+|+.+..+..+.+++.++..+.+  +.+.+++..++.|++.+...+...++
T Consensus       260 ~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~  339 (428)
T PF13347_consen  260 GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAM  339 (428)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccc
Confidence            5678888899999999999999999999999999999999999999888876  89999999999999999999999999


Q ss_pred             HHhhCC-------cccchhHHhHHHHHHHHHHHHHHHHHHHhhc
Q 016882          172 IAETAP-------TPMRGQLISLKEFFIVLGMVGGYGIGSLLVD  208 (381)
Q Consensus       172 ~~~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  208 (381)
                      ++|..+       +++.|...++......+|..+++.+.+.+.+
T Consensus       340 ~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~  383 (428)
T PF13347_consen  340 LADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLA  383 (428)
T ss_pred             cccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence            999887       3556899999999999999999999888875

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.93  E-value=5.2e-08  Score=86.95  Aligned_cols=178  Identities=24%  Similarity=0.173  Sum_probs=137.2

Q ss_pred             CchhHHHHHHHHHHHHHHhhhcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-c
Q 016882           44 NYSVSAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADIL-G  122 (381)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-G  122 (381)
                      -|+.+..|.+.+...+-++.++....    .+|.+..|       -|+|..+.|++.+...+....+++....+.+|. .
T Consensus       204 vw~~~~aW~vtLfmGlqS~~~Y~~~~----WLP~ili~-------~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n  272 (395)
T COG2807         204 VWRSPLAWQVTLFMGLQSLLYYIVIG----WLPAILID-------RGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKN  272 (395)
T ss_pred             cccCchhHHHHHHHHhhHHHHHHHHH----HHHHHHHH-------cCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            45555566665555555555444444    46776666       699999999999999999999999999999965 5


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCC-cccchhHHhHHHHHHHHHHHHHHH
Q 016882          123 RRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAP-TPMRGQLISLKEFFIVLGMVGGYG  201 (381)
Q Consensus       123 rk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~  201 (381)
                      +|+.......+..++.+.+.+.+.-..+.- -++.|+|.|..++....++.+..+ +++-++..++.|....+=..+||.
T Consensus       273 ~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~  351 (395)
T COG2807         273 QRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPW  351 (395)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhh
Confidence            777777778877777777777654322222 489999999999999999988775 456667778888888888899999


Q ss_pred             HHHHhhcccchhHHHHHhhHHHHHHHHHHHhh
Q 016882          202 IGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW  233 (381)
Q Consensus       202 ~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~~  233 (381)
                      +.|++.|..++|+...+..+...+.+.+.-+.
T Consensus       352 l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~  383 (395)
T COG2807         352 LFGFLHDATGSWSAPLVLLALATLLMLIFGLR  383 (395)
T ss_pred             hHhHHHHhcCChHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999988888887776554443

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.92  E-value=3e-07  Score=86.20  Aligned_cols=120  Identities=25%  Similarity=0.328  Sum_probs=103.8

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhc--hHHHHHHHHHHHHHHHhhHhH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAP--DFIIMVVGRFVFGIGIGLAMH  166 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~r~l~G~~~g~~~~  166 (381)
                      +|-++....+.......+..++.+++.++++|+|+|+++.++.++..++.++..+.+  +.+.+++..++.++|.+...+
T Consensus       267 lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~  346 (467)
T COG2211         267 LGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANP  346 (467)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhcccc
Confidence            455677777888888888888899999999999999999999999999999888865  788888999999999999999


Q ss_pred             HHHHHHHhhCC-------cccchhHHhHHHHHHHHHHHHHHHHHHHhhc
Q 016882          167 AAPMYIAETAP-------TPMRGQLISLKEFFIVLGMVGGYGIGSLLVD  208 (381)
Q Consensus       167 ~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  208 (381)
                      ..+++++|..+       .|.-|...+......-+|..++..+.++...
T Consensus       347 l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~  395 (467)
T COG2211         347 LPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILG  395 (467)
T ss_pred             ccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999988764       4556778888888889999999988888774

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.88  E-value=4.1e-08  Score=93.07  Aligned_cols=133  Identities=21%  Similarity=0.255  Sum_probs=105.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccc
Q 016882          102 GSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMR  181 (381)
Q Consensus       102 ~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r  181 (381)
                      ...+...+.++..|.++||+|||..+.+.++...+..+...+.. +|.++ .--+.| +.+.......++++|....++|
T Consensus        70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~~~~-~~~l~g-~~~~~~s~~~a~vadis~~~~R  146 (463)
T KOG2816|consen   70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YWFFL-LLGLSG-GFSAIFSVGFAYVADISSEEER  146 (463)
T ss_pred             hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HHHhh-hccccc-chhhhhhhhhhheeeccchhHH
Confidence            34677788999999999999999999999888887776666654 44433 222222 2344677788999999999999


Q ss_pred             hhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHH-HHhhcccch
Q 016882          182 GQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGM-GMWWLPASP  238 (381)
Q Consensus       182 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~-~~~~~~~~~  238 (381)
                      ....|+....+..+..++|.+++.+.... |.-..|.+..+..++..+ ..+++||+-
T Consensus       147 ~~~~gll~~~~~~~~~~~p~~~~~~~~~~-~~a~~f~ia~~~~~~~~~y~~~~l~Esl  203 (463)
T KOG2816|consen  147 SSSIGLLSGTFGAGLVIGPALGGYLVKFL-GIALVFLIAAASGILSLLYMLLFLPESL  203 (463)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHhhcccccc
Confidence            99999999999999999999999999886 888889988888887654 445578874

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.86  E-value=8.7e-08  Score=85.95  Aligned_cols=155  Identities=33%  Similarity=0.493  Sum_probs=120.0

Q ss_pred             ccccccccccccccCCCCCCCccccCCh--hHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 016882           66 YDIGSTSCATISIESPTLSGISWYDLSS--VEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTAL  143 (381)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~  143 (381)
                      +.........+....+       ++.+.  ...++..+.+.++..++.++.|.+.||+|||+.+..+.....++.++..+
T Consensus        16 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~   88 (338)
T COG0477          16 LDLGLLSPALPLLLST-------LSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLAL   88 (338)
T ss_pred             HhcchHHHHHHHHHHH-------cCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHh
Confidence            3444444444444443       34344  47899999999999999999999999999998888888765666666767


Q ss_pred             hch--HHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCc-ccchhHHhHHHH-HHHHHHHHHHHHHHHhhcc-cchhHHHHH
Q 016882          144 APD--FIIMVVGRFVFGIGIGLAMHAAPMYIAETAPT-PMRGQLISLKEF-FIVLGMVGGYGIGSLLVDL-VAGWRYMYG  218 (381)
Q Consensus       144 ~~~--~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~-~~r~~~~~~~~~-~~~~g~~~~~~~~~~l~~~-~~~w~~~f~  218 (381)
                      ..+  .+.+++.|++.|++.+...+....++.|+.|+ ++|+...+.... ...+|..+++.+++.+... ..+||+.|.
T Consensus        89 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (338)
T COG0477          89 APNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFL  168 (338)
T ss_pred             CccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence            665  89999999999999999999999999999998 678999998887 5888888888777766644 237998666


Q ss_pred             hhHHHHHHH
Q 016882          219 ASTPLAVIM  227 (381)
Q Consensus       219 i~~~~~~~~  227 (381)
                      +........
T Consensus       169 ~~~~~~~~~  177 (338)
T COG0477         169 LAALLGLLL  177 (338)
T ss_pred             HHHHHHHHH
Confidence            666665443

>PRK11043 putative transporter; Provisional

Probab=98.85  E-value=1.5e-07  Score=88.94  Aligned_cols=120  Identities=16%  Similarity=0.133  Sum_probs=95.3

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH---H--hchHHHHHHHHHHHHHHHhh
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTA---L--APDFIIMVVGRFVFGIGIGL  163 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~---~--~~~~~~~~~~r~l~G~~~g~  163 (381)
                      +|.+..+.++......++..++.++.+++.||+|+|+.+....+..+++.+...   .  .++.+.+++...+.|++.+.
T Consensus       233 ~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (401)
T PRK11043        233 MGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGA  312 (401)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHH
Confidence            688999999988888899999999999999999999877665555444433222   2  24555566677788888888


Q ss_pred             HhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcc
Q 016882          164 AMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDL  209 (381)
Q Consensus       164 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  209 (381)
                      ..+.......+..| ++|+++.++.+.....+...++.+.+.+.+.
T Consensus       313 ~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~  357 (401)
T PRK11043        313 IYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIST  357 (401)
T ss_pred             HHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            88888888777776 6799999999998888888999998888764

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.85  E-value=3.8e-08  Score=84.69  Aligned_cols=123  Identities=19%  Similarity=0.116  Sum_probs=100.0

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH-HHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALL-YLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHA  167 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~  167 (381)
                      +|+|+...+.+.+......++.++++|.++||+|++...+.+..+ ...+.....+  +.+.=+++..+.|+.....-..
T Consensus       295 fGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLsysllAcs  372 (459)
T KOG4686|consen  295 FGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLSYSLLACS  372 (459)
T ss_pred             hCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhhHHHHHHH
Confidence            899999999999999999999999999999999999887765443 3444444444  3333455667788877766666


Q ss_pred             HHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchh
Q 016882          168 APMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGW  213 (381)
Q Consensus       168 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w  213 (381)
                      .+..++-+.|+++.|++.|..+...++|-.+.|.+++.+.++.+++
T Consensus       373 lWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y  418 (459)
T KOG4686|consen  373 LWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSY  418 (459)
T ss_pred             HhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCch
Confidence            7778888999999999999999999999999999999999876443

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.84  E-value=2.3e-07  Score=86.74  Aligned_cols=116  Identities=17%  Similarity=0.153  Sum_probs=85.0

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH---Hh-chHHHHHHHHHHHHHHHhhH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTA---LA-PDFIIMVVGRFVFGIGIGLA  164 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~---~~-~~~~~~~~~r~l~G~~~g~~  164 (381)
                      +|.++.+.+++.++..++..++.++.|++.||+|||+.+.++.++..+..+...   .. .+++.+.++-.+.+.+.+..
T Consensus       225 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (377)
T PRK11102        225 NGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCVSMI  304 (377)
T ss_pred             hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence            588999999999999999999999999999999999999888776544333222   22 24555555555555555555


Q ss_pred             hHHHHHHHHhhCCcccchhHHhHHHH-HHHHHHHHHHHHHHH
Q 016882          165 MHAAPMYIAETAPTPMRGQLISLKEF-FIVLGMVGGYGIGSL  205 (381)
Q Consensus       165 ~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~~~~~  205 (381)
                      ......++.|..| ++++++.++.+. ...+|..+++.++..
T Consensus       305 ~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~~  345 (377)
T PRK11102        305 SSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSLA  345 (377)
T ss_pred             hHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            6666667778776 788999998754 456777777776543

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.84  E-value=1.8e-07  Score=90.79  Aligned_cols=137  Identities=12%  Similarity=0.060  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHHHHHHHHHH----HHHHHhhchHHHHHHHHHHHHHHHHHHHHhch---------HHHHHHHHHHHHHHHh
Q 016882           96 IGLITSGSLYGALIGSILA----FNIADILGRRRELILAALLYLVGALVTALAPD---------FIIMVVGRFVFGIGIG  162 (381)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~----g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~---------~~~~~~~r~l~G~~~g  162 (381)
                      .+++.++..+...+..++.    +++.+|++.++.+.+|+++.+++.+..+...+         .+++.+.+++.|+|.+
T Consensus       318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~  397 (500)
T PRK09584        318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL  397 (500)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence            4555666666666666665    55666666678888999999999888777654         4678899999999999


Q ss_pred             hHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhc---------ccchhHHHHHhhHHHHHHHHHHHh
Q 016882          163 LAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVD---------LVAGWRYMYGASTPLAVIMGMGMW  232 (381)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~---------~~~~w~~~f~i~~~~~~~~~~~~~  232 (381)
                      ...|...+++.+..|++.||+++|++.....+|..++..+......         ..++..+.|...++.+++..++.+
T Consensus       398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~  476 (500)
T PRK09584        398 MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLML  476 (500)
T ss_pred             HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999988888888888777653221         112467888877777665444333

>TIGR00788 fbt folate/biopterin transporter

Probab=98.83  E-value=6.8e-08  Score=92.97  Aligned_cols=147  Identities=15%  Similarity=0.134  Sum_probs=118.5

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHh----------chHHHHHHHHHHHH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALA----------PDFIIMVVGRFVFG  158 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~----------~~~~~~~~~r~l~G  158 (381)
                      +|.++.+.|.+.....++.+++....+++.+|++.|+++.++.++.+++.+.....          ++.+.+....++.+
T Consensus       283 lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~  362 (468)
T TIGR00788       283 LPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAE  362 (468)
T ss_pred             CCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHH
Confidence            79999999999999999999999999999999999999999999988877554311          33344556678889


Q ss_pred             HHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccch-----hHHHH---HhhHHHHHHHHHH
Q 016882          159 IGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAG-----WRYMY---GASTPLAVIMGMG  230 (381)
Q Consensus       159 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~-----w~~~f---~i~~~~~~~~~~~  230 (381)
                      ++.+........++.+..|++.+|+..++.+...++|..+++.+++.+.+.. |     ++..+   .+..+..++.+..
T Consensus       363 ~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~-g~~~~~~~~~~~~i~i~~~~~l~~l~~  441 (468)
T TIGR00788       363 VLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETI-GITCDNSNNLWLLILGHSLAPLLPLPL  441 (468)
T ss_pred             HHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCcccccchHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999988755 3     33333   2333334444444


Q ss_pred             Hhhccc
Q 016882          231 MWWLPA  236 (381)
Q Consensus       231 ~~~~~~  236 (381)
                      .+++|+
T Consensus       442 ~~llP~  447 (468)
T TIGR00788       442 LHLLPR  447 (468)
T ss_pred             HHhCCC
Confidence            456786

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.83  E-value=1.1e-06  Score=80.33  Aligned_cols=232  Identities=13%  Similarity=0.095  Sum_probs=148.0

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----hHHHHH-HHHHHHHHHHHHHHHh-----c-------h--HH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILG-----RRRELI-LAALLYLVGALVTALA-----P-------D--FI  148 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~G-----rk~~l~-~~~~~~~~~~~~~~~~-----~-------~--~~  148 (381)
                      ++++..-.+.+.++..+... ..+.+|..+|+.+     ||..++ .|.++...+..+.+++     .       +  .+
T Consensus        10 L~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g   88 (403)
T PF03209_consen   10 LGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLG   88 (403)
T ss_pred             hccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHH
Confidence            78888888888888777665 5889999999998     776555 4566655555554442     2       1  22


Q ss_pred             --HHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHH
Q 016882          149 --IMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVI  226 (381)
Q Consensus       149 --~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~  226 (381)
                        ...++..+.|+|.+.......+++.|..|+++|+++.++.+....+|.+++..+.+.+.+.+..-|..-.+..+..+.
T Consensus        89 ~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~i~  168 (403)
T PF03209_consen   89 LALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVALIA  168 (403)
T ss_pred             HHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHH
Confidence              344566788999999999999999999999999999999999999999999999999998764445444433333222


Q ss_pred             --HHHHHhhcccchhHHHHhhccccCcchhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhhccccccccchhhcccc
Q 016882          227 --MGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGK  304 (381)
Q Consensus       227 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (381)
                        ..++..+-.|+++. ...                                       +..++++..-...+++++.++
T Consensus       169 ~~l~~ia~wg~E~r~~-~~~---------------------------------------~~~~~~~~~f~~a~~~~~~~~  208 (403)
T PF03209_consen  169 LLLNLIALWGQEPRRS-RRA---------------------------------------AAAERPRPPFREAWRQVWASP  208 (403)
T ss_pred             HHHHHHHHHhcccCCc-ccc---------------------------------------cCCCCCCccHHHHHHHHHhCC
Confidence              22233333332210 000                                       000001122234456666677


Q ss_pred             chHHHHHHHHHHHHHHhhchhHHHhcHHHHHHHcCCCCCchhHHHHHHHHHHHHHHhHHHH
Q 016882          305 CLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKVGSCTLFF  365 (381)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~  365 (381)
                      .-++++..+++..+..+.   --...=||=-+.+|+ +..+.+..+...+...++|..+.-
T Consensus       209 ~a~~f~~fl~l~t~a~~~---QD~iLEPygg~Vfgm-sv~eTT~Lta~~~~G~L~G~~~~g  265 (403)
T PF03209_consen  209 QARRFFVFLFLGTLAFFM---QDVILEPYGGEVFGM-SVGETTRLTAFWGGGTLLGMLLAG  265 (403)
T ss_pred             ChhHHHHHHHHHHHHHHh---hHHHcCCchhHHcCC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666655544443332111   111122443445688 788888888888888888876643

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.81  E-value=2e-07  Score=89.99  Aligned_cols=136  Identities=18%  Similarity=0.157  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhch-----HHHH--HHHHHHHHHHHHHHHH---------hchHHHHHHHHHHHHH
Q 016882           96 IGLITSGSLYGALIGSILAFNIADILGR-----RREL--ILAALLYLVGALVTAL---------APDFIIMVVGRFVFGI  159 (381)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~g~l~d~~Gr-----k~~l--~~~~~~~~~~~~~~~~---------~~~~~~~~~~r~l~G~  159 (381)
                      .+++.++..+...+.+++..++-.|.+|     +...  .+|+++.+++....++         ..+++++++..++.|+
T Consensus       314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~  393 (475)
T TIGR00924       314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL  393 (475)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence            6788888888888888886654444443     3333  6788888888777764         3589999999999999


Q ss_pred             HHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHh
Q 016882          160 GIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMW  232 (381)
Q Consensus       160 ~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~  232 (381)
                      |.....|...+++.+..|++.||+.+|++.....+|..+++.+........ +|.+.|...++..++..++.+
T Consensus       394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  465 (475)
T TIGR00924       394 GELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQ-GVTGVFGKIGLVTLLVGVVMA  465 (475)
T ss_pred             HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-chhhHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999988876665 788888887777766554443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK11462 putative transporter; Provisional

Probab=98.78  E-value=9.6e-07  Score=84.91  Aligned_cols=115  Identities=22%  Similarity=0.194  Sum_probs=81.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhc--hHHHHHHHHHHHHHHHhhHhHHHHHH
Q 016882           94 VEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAP--DFIIMVVGRFVFGIGIGLAMHAAPMY  171 (381)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~r~l~G~~~g~~~~~~~~~  171 (381)
                      ...+.+.+.+.++.+++.+++++++||+|+|+.+..+..+.++..++..+.+  +.+.+++.-++.|++.+...+...++
T Consensus       263 ~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m  342 (460)
T PRK11462        263 EVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVM  342 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456677788889999999999999999999988765554444333333322  23344555567788877777777778


Q ss_pred             HHhhCC-------cccchhHHhHHHHHHHHHHHHHHHHHHHhhc
Q 016882          172 IAETAP-------TPMRGQLISLKEFFIVLGMVGGYGIGSLLVD  208 (381)
Q Consensus       172 ~~~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  208 (381)
                      ++|..+       ++..|...+.......+|..+++.+++.++.
T Consensus       343 ~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~  386 (460)
T PRK11462        343 MSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLA  386 (460)
T ss_pred             HHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            887766       4444555677778888899999988888774

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.77  E-value=4.6e-06  Score=82.78  Aligned_cols=145  Identities=16%  Similarity=0.227  Sum_probs=118.9

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHh-hchHHHHHHHHHHHHHHHHHHHHhch--------HHHHHHHHHHHHH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADI-LGRRRELILAALLYLVGALVTALAPD--------FIIMVVGRFVFGI  159 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~Grk~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~~r~l~G~  159 (381)
                      +|++......+...+....-+..+++|+++|+ +||++.+.++.++..++.++.++...        ....+++-.+..+
T Consensus        18 lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~   97 (654)
T TIGR00926        18 LGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIAL   97 (654)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHh
Confidence            68888888889999988999999999999996 69999999999999999888776421        2335567778888


Q ss_pred             HHhhHhHHHHHHHHhhCCcc---cchhHHhHHHHHHHHHHHHHHHHHHHhhccc------chhHHHHHhhHHHHHHHHHH
Q 016882          160 GIGLAMHAAPMYIAETAPTP---MRGQLISLKEFFIVLGMVGGYGIGSLLVDLV------AGWRYMYGASTPLAVIMGMG  230 (381)
Q Consensus       160 ~~g~~~~~~~~~~~~~~~~~---~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~------~~w~~~f~i~~~~~~~~~~~  230 (381)
                      |.|+.-+...+...|.++++   +|.....++..+.++|+.+++++...+.+..      .+|...|.+.++..++.++.
T Consensus        98 G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lv  177 (654)
T TIGR00926        98 GTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIV  177 (654)
T ss_pred             hccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHH
Confidence            99999999999999999754   3667788888999999999999999887432      26999999999998887665


Q ss_pred             Hhh
Q 016882          231 MWW  233 (381)
Q Consensus       231 ~~~  233 (381)
                      ...
T Consensus       178 f~~  180 (654)
T TIGR00926       178 FMA  180 (654)
T ss_pred             HHH
Confidence            544

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.76  E-value=3.2e-07  Score=86.88  Aligned_cols=134  Identities=8%  Similarity=-0.014  Sum_probs=103.3

Q ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHHH
Q 016882           90 DLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAP  169 (381)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~  169 (381)
                      +.+....+...+.+..+..+|.++++++.||+++|+++.+...+.++..++....++... ..+-++.|++.+..+|...
T Consensus       265 ~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~-~~~l~~~glf~s~~fp~i~  343 (410)
T TIGR00885       265 GMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVG-LYCLTLCSAFMSLMFPTIY  343 (410)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHHHHHHHHH
Confidence            445555566677777888999999999999999999999988888888888888776544 5666788888888999999


Q ss_pred             HHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhccc-----chhHHHHHhhHHHHHH
Q 016882          170 MYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV-----AGWRYMYGASTPLAVI  226 (381)
Q Consensus       170 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-----~~w~~~f~i~~~~~~~  226 (381)
                      +...+..+++.+....++...  .+|+.+.|++.+.+.+..     ++.+..|++..++-+.
T Consensus       344 sl~~~~~g~~~~~~s~~l~~~--~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~~  403 (410)
T TIGR00885       344 GIALKGLGQDTKYGAAGLVMA--IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFAV  403 (410)
T ss_pred             HHHHhhhhhhhhhhHHHHHHH--HhccchHHHHHHHHHHHhcccccCccchHHHHHHHHHHH
Confidence            999999986664434444333  399999999999999843     3577788775555443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.76  E-value=1.2e-08  Score=95.26  Aligned_cols=144  Identities=17%  Similarity=0.155  Sum_probs=130.5

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA  168 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~  168 (381)
                      ++..+.-.|........+-++.-++.+++.+|+|+-+++.+++....+=.+..+...|.|..+...+++|+..+..+...
T Consensus       401 ~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~  480 (618)
T KOG3762|consen  401 LGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAI  480 (618)
T ss_pred             cCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHH
Confidence            46566667777888888889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCcccchhHHhHHH-HHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHhh
Q 016882          169 PMYIAETAPTPMRGQLISLKE-FFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW  233 (381)
Q Consensus       169 ~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~~  233 (381)
                      .+|++...|++.|.++.++.+ ...++|-.+|.++++.+.+.+ +-|..|.+.++.+++.+++...
T Consensus       481 ~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~f-g~~ttf~~~giAcl~~l~~~~~  545 (618)
T KOG3762|consen  481 ISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERF-GARTTFRIFGIACLVTLALFIS  545 (618)
T ss_pred             HHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheee-hhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999975 578899999999999999988 8899999999988886665554

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.73  E-value=7.4e-09  Score=94.82  Aligned_cols=180  Identities=15%  Similarity=-0.002  Sum_probs=125.0

Q ss_pred             HHHHHHHHHHhhhcccccccccccccccCCCCCCCccccCChhHHHH--------HHHH-HHHHHHHHHHHHHHHHHhhc
Q 016882           52 LPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGL--------ITSG-SLYGALIGSILAFNIADILG  122 (381)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~-~~~~~~~~~~~~g~l~d~~G  122 (381)
                      ..++..+..+|+.-......+.....+.+.       .|+.+.+...        ...+ ...++..|..+...+.|++|
T Consensus       304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~-------ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iG  376 (538)
T KOG0252|consen  304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSA-------IGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIG  376 (538)
T ss_pred             HHHHHHHHHHHhhhhhhhccccHHHHHHHh-------hccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhh
Confidence            344556666666555555555555555443       2332222111        1111 12223335556667899999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhch----HHHHHHHHHHHHH-HHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHH
Q 016882          123 RRRELILAALLYLVGALVTALAPD----FIIMVVGRFVFGI-GIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMV  197 (381)
Q Consensus       123 rk~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~r~l~G~-~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~  197 (381)
                      ||+..+.|.+++++..+..+...|    -..++++..+..+ +.-+.......+.+|.+|.+.|++..|+.....-+|++
T Consensus       377 Rk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAi  456 (538)
T KOG0252|consen  377 RKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAI  456 (538)
T ss_pred             hHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHH
Confidence            999999999999999888887665    2223333333332 22333445566779999999999999999999999999


Q ss_pred             HHHHHHHHhhc-----ccchhHHHHHhhHHHHHHHHHHHhhcccchh
Q 016882          198 GGYGIGSLLVD-----LVAGWRYMYGASTPLAVIMGMGMWWLPASPR  239 (381)
Q Consensus       198 ~~~~~~~~l~~-----~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~  239 (381)
                      ++...-.++.+     .. +.|+.|++.+.++++..+..+++||+.+
T Consensus       457 vg~~~F~~~t~~~yp~~~-g~~~v~~i~~~~~~~gi~~T~l~pEtk~  502 (538)
T KOG0252|consen  457 VGAFGFLYLTDHNYPPNI-GVRNVFIILAGCMLLGILFTLLIPETKG  502 (538)
T ss_pred             HHHHHhhHhhhccCCccc-cchHHHHHHHHHHHHhHheeEEeecccc
Confidence            99999999987     54 8999999999999999999999999864

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.72  E-value=8.8e-08  Score=91.18  Aligned_cols=173  Identities=13%  Similarity=0.090  Sum_probs=120.7

Q ss_pred             HHHHHHHHhhhcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhch---------H
Q 016882           54 FLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGR---------R  124 (381)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Gr---------k  124 (381)
                      +..+.++.+...+....+....|.+.++.      +|++-.+.|++.++..+...+..+++|.++||.-+         |
T Consensus       260 vwai~~~~f~~~~~~~~l~~y~PtY~~~V------L~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rk  333 (466)
T KOG2532|consen  260 VWAIWISAFGGNWGFYLLLTYLPTYLKEV------LGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRK  333 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHH------hCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHH
Confidence            45555566666667777777788887764      79999999999999999999999999999998754         3


Q ss_pred             HHHHHHHHHHHHHHHHHHHhch--HHHHHHHHHHHHHHH-hhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHH
Q 016882          125 RELILAALLYLVGALVTALAPD--FIIMVVGRFVFGIGI-GLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYG  201 (381)
Q Consensus       125 ~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~r~l~G~~~-g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~  201 (381)
                      ..-.++....+++.+..++.++  .+..+++. ..+++. |...+....-..+. .+++-+..+|+.+....+...++|.
T Consensus       334 ifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l-~~~~~~~g~~~~Gf~~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~  411 (466)
T KOG2532|consen  334 IFNTIAFGGPAVFLLVLAFTSDEHRLLAVILL-TIAIGLSGFNISGFYKNHQDI-APQHAGFVMGIINFVGALAGFIAPL  411 (466)
T ss_pred             HHHhHHHHHHHHHHHeeeecCCCcchHHHHHH-HHHHHHcccchhhhHhhhhhc-cchHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334555555666666666552  21222222 222222 22222222222222 4588899999999999999999999


Q ss_pred             HHHHhhc--ccchhHHHHHhhHHHHHHHHHHHhhc
Q 016882          202 IGSLLVD--LVAGWRYMYGASTPLAVIMGMGMWWL  234 (381)
Q Consensus       202 ~~~~l~~--~~~~w~~~f~i~~~~~~~~~~~~~~~  234 (381)
                      +.+.+.+  ....||+.|++.+++.++..+.+.++
T Consensus       412 ~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f  446 (466)
T KOG2532|consen  412 LVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF  446 (466)
T ss_pred             heeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence            9999994  23489999999999988876555443

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.66  E-value=4.2e-06  Score=78.80  Aligned_cols=120  Identities=15%  Similarity=0.089  Sum_probs=92.9

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH-HHHHHHHH--hchHHHHHHHHHHHHHHHhhHh
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYL-VGALVTAL--APDFIIMVVGRFVFGIGIGLAM  165 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~-~~~~~~~~--~~~~~~~~~~r~l~G~~~g~~~  165 (381)
                      +|.+..+.+++.....++..+++++.+++.||++++........+.. +.......  ..+.+.+.++.++.|++.+...
T Consensus       238 ~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  317 (394)
T PRK11652        238 LGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGAGMLF  317 (394)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence            58888999999999999999999999999999984443322222222 22222222  2356777788899999999999


Q ss_pred             HHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcc
Q 016882          166 HAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDL  209 (381)
Q Consensus       166 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  209 (381)
                      +...++..|..| ++++...++.+....+|..+++.+++.+...
T Consensus       318 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~  360 (394)
T PRK11652        318 PLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQT  360 (394)
T ss_pred             HHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            999999999987 5789999999999999999999999887654

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.64  E-value=5.1e-06  Score=76.07  Aligned_cols=143  Identities=20%  Similarity=0.206  Sum_probs=120.4

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHHH---hchHHHHHHHHHHHHHHHhhH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIAD-ILGRRRELILAALLYLVGALVTAL---APDFIIMVVGRFVFGIGIGLA  164 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~Grk~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~r~l~G~~~g~~  164 (381)
                      ||++..+...+......|..++-...|++.. |.++|+...+|..+..++..+..+   ..+.+.+...-++.|++.|..
T Consensus       239 fgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f  318 (403)
T PF03209_consen  239 FGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLF  318 (403)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHH
Confidence            8999999999999999999999999998877 678888887888877776665444   457888999999999999999


Q ss_pred             hHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcc---------cchhHHHHHhhHHHHHHHHHHH
Q 016882          165 MHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDL---------VAGWRYMYGASTPLAVIMGMGM  231 (381)
Q Consensus       165 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---------~~~w~~~f~i~~~~~~~~~~~~  231 (381)
                      .....+.+.++..+++.|..+|.+...+.++..++..+++.+.+.         ..+|-..|.+.++..++++++.
T Consensus       319 ~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll  394 (403)
T PF03209_consen  319 TVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLL  394 (403)
T ss_pred             HHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999988752         1256667777777766655443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.61  E-value=1.6e-06  Score=83.84  Aligned_cols=138  Identities=14%  Similarity=0.128  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhchHHH-------HHHHHHHHHHHHHHHH-----Hh-----chHHHHHHHHHHHH
Q 016882           96 IGLITSGSLYGALIGSILAFNIADILGRRRE-------LILAALLYLVGALVTA-----LA-----PDFIIMVVGRFVFG  158 (381)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~-------l~~~~~~~~~~~~~~~-----~~-----~~~~~~~~~r~l~G  158 (381)
                      .+++.+++.+...+.+++.+++.||+++|+.       +.+|+++.+++.+..+     ..     .+++.+....++.|
T Consensus       311 ~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g  390 (489)
T PRK10207        311 PVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQS  390 (489)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHH
Confidence            4556666777788889999999999999863       6677777776654321     21     25777888999999


Q ss_pred             HHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcc---------cchhHHHHHhhHHHHHHHHH
Q 016882          159 IGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDL---------VAGWRYMYGASTPLAVIMGM  229 (381)
Q Consensus       159 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---------~~~w~~~f~i~~~~~~~~~~  229 (381)
                      +|.+...+...+++.+..|++.++.++|++.....+|..++..++......         .....+.|...++..+++.+
T Consensus       391 ~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v  470 (489)
T PRK10207        391 LGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAV  470 (489)
T ss_pred             HHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998888655310         11345677766666665444


Q ss_pred             HHhh
Q 016882          230 GMWW  233 (381)
Q Consensus       230 ~~~~  233 (381)
                      +.++
T Consensus       471 ~~~~  474 (489)
T PRK10207        471 VMAL  474 (489)
T ss_pred             HHHH
Confidence            4433

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.60  E-value=1e-07  Score=85.99  Aligned_cols=140  Identities=20%  Similarity=0.174  Sum_probs=113.7

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhc--hHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILG--RRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMH  166 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~G--rk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~  166 (381)
                      +..+..+.|+..--..+.+.++..++|.++||++  |-.....+++..+++.....+++++..+++-++..|++.+...+
T Consensus       301 m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~da  380 (464)
T KOG3764|consen  301 MFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLADA  380 (464)
T ss_pred             ccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHH
Confidence            3433447777777788999999999999999999  54445567777777777888899999999999888888887776


Q ss_pred             HHHHHHHhhCCcc------cchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHH
Q 016882          167 AAPMYIAETAPTP------MRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGM  229 (381)
Q Consensus       167 ~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~  229 (381)
                      ........+.+.+      ..|...++...++++|..+||.+++.+.+.. |++|...+.++..++-..
T Consensus       381 sl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~i-GF~wl~~iig~~n~iyap  448 (464)
T KOG3764|consen  381 SLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAI-GFEWLMTIIGILNLIYAP  448 (464)
T ss_pred             HHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeeh-hHHHHHHHHHHHHHHHHH
Confidence            6666666666543      4468899999999999999999999999998 999999988888877443

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.59  E-value=7.2e-07  Score=84.88  Aligned_cols=146  Identities=27%  Similarity=0.233  Sum_probs=113.4

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-----chHHHHHHHHHHHHHHHHHHHHhc----hHHHHHHHHHHHHH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADIL-----GRRRELILAALLYLVGALVTALAP----DFIIMVVGRFVFGI  159 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----Grk~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~r~l~G~  159 (381)
                      +|+++.+...+.++..+.+.+ .++.|.++|.+     .||+-++++.++..++.+.++..+    +.....++-++..+
T Consensus        20 l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~   98 (433)
T PF03092_consen   20 LGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLASF   98 (433)
T ss_pred             cCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHH
Confidence            899999999988888777765 56899999976     356666667777766566555533    45666677788888


Q ss_pred             HHhhHhHHHHHHHHhhCC--cccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHhhccc
Q 016882          160 GIGLAMHAAPMYIAETAP--TPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPA  236 (381)
Q Consensus       160 ~~g~~~~~~~~~~~~~~~--~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~~~~~  236 (381)
                      |........-+++.|...  ++.||...+.......+|.+++..++|.+.+.. +++..|.+.+++..+.++..++++|
T Consensus        99 g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~-~~~~~f~i~~~~~~l~~~~~~~~~~  176 (433)
T PF03092_consen   99 GYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSF-GPQGVFLISAALPLLMLIVALFLLE  176 (433)
T ss_pred             HHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcC-CCeEEehHHHHHHHHHHHHHHHhhh
Confidence            999999999999999873  333778888888999999999999999999887 8999999888887776555544433

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.54  E-value=1.6e-05  Score=72.93  Aligned_cols=233  Identities=13%  Similarity=0.084  Sum_probs=149.7

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHH-HHHHHHHHHHHHHHHHHhch---HHHHHHHHHHHHHHHhhHhHH
Q 016882           92 SSVEIGLITSGSLYGALIGSILAFNIADILGRRRE-LILAALLYLVGALVTALAPD---FIIMVVGRFVFGIGIGLAMHA  167 (381)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~-l~~~~~~~~~~~~~~~~~~~---~~~~~~~r~l~G~~~g~~~~~  167 (381)
                      +.+..+...++..+..++.+|+.|.++|+.|+||. +-+...+..++.++..+.++   ++..++...+..++..+..+.
T Consensus        56 ~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vf  135 (438)
T COG2270          56 STAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVF  135 (438)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhee
Confidence            34667888899999999999999999999996554 44556666666666666654   555666778889999999999


Q ss_pred             HHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhh--c---------------ccchhHHHHHhhHHHHHHHHH-
Q 016882          168 APMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLV--D---------------LVAGWRYMYGASTPLAVIMGM-  229 (381)
Q Consensus       168 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~--~---------------~~~~w~~~f~i~~~~~~~~~~-  229 (381)
                      ..+++.+..++++-++..++-.....+|+++.-.+.....  .               ....-|..+.+.++..++..+ 
T Consensus       136 yds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iP  215 (438)
T COG2270         136 YDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALP  215 (438)
T ss_pred             hhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhH
Confidence            9999999999988888887766655666655444431111  1               112457777777777665443 


Q ss_pred             HHhhcccchhHHHHhhccccCcchhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhhccccccccchhhccccchHHH
Q 016882          230 GMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKAL  309 (381)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (381)
                      .+++.++.++-.  .+            +                 .....+-       -++-+.+++++.++++....
T Consensus       216 m~~~v~~~~~~~--~~------------~-----------------~~~l~~g-------~k~L~~t~k~i~~~~~i~~F  257 (438)
T COG2270         216 MILNVHDAEKIS--SP------------P-----------------PTALRNG-------FKELKSTFKEIRGRKNLVLF  257 (438)
T ss_pred             HHhccccccccc--cc------------c-----------------hHHHHHH-------HHHHHHHHHHHhcccchHHH
Confidence            444455543200  00            0                 0000000       11113445566555433333


Q ss_pred             HHHHHHHHHHHhhchhHHHhcHHHHHH-HcCCCCCchhHHHHHHHHHHHHHHhHHHHHH
Q 016882          310 IIGAGLVLFQQITGQPSVLYYAASILQ-SAGFSAASDATRVSILLGLFKVGSCTLFFMS  367 (381)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~  367 (381)
                      ++    ..+...-|.+.+......+-. ++|+ ++.+-.......++.+++|++++-+.
T Consensus       258 Li----A~~~~~DGv~til~~~~~fg~~~~gl-s~~~lll~g~~~~vvA~lg~ii~g~L  311 (438)
T COG2270         258 LI----ARFFYIDGVNTILAMGGVFGAADLGL-SSTELLLIGIALSVVAALGAIIAGFL  311 (438)
T ss_pred             HH----HHHHHHhhHHHHHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22    233334566777777777766 6799 77888888889999999999886644

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.53  E-value=2e-07  Score=86.71  Aligned_cols=106  Identities=21%  Similarity=0.187  Sum_probs=82.7

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHh--c--hHHHHHHHHHHHHHHHhhH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALA--P--DFIIMVVGRFVFGIGIGLA  164 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~--~--~~~~~~~~r~l~G~~~g~~  164 (381)
                      +|.+..+.+++.++..++..++.++.|++.||+|||+.+..+..+...+..+..+.  .  +.+.+.+...+.+++.|..
T Consensus       256 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  335 (366)
T TIGR00886       256 FGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAG  335 (366)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhccc
Confidence            68899999999999999999999999999999999988887776666655555432  2  5555555556666666666


Q ss_pred             hHHHHHHHHhhCCcccchhHHhHHHHHHHHH
Q 016882          165 MHAAPMYIAETAPTPMRGQLISLKEFFIVLG  195 (381)
Q Consensus       165 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g  195 (381)
                      .+....++.+..| +++|..+|+.+....+|
T Consensus       336 ~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       336 NGSTFALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             cchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence            6667778888887 68999999988776654

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.50  E-value=2.7e-06  Score=68.27  Aligned_cols=111  Identities=15%  Similarity=0.135  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhC
Q 016882           97 GLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETA  176 (381)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~  176 (381)
                      -.-.++.+....+++++.+.+.+++|.|+.+++|.+...+-.... +-++.+.++.+-.+.|++.+..++....++.+..
T Consensus        40 ~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s  118 (156)
T PF05978_consen   40 YYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYS  118 (156)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcC
Confidence            334556667778888899999999999999999999888654433 4567888999999999999999999999999999


Q ss_pred             CcccchhHHhHHHHHHHHHHHHHHHHHHHhhc
Q 016882          177 PTPMRGQLISLKEFFIVLGMVGGYGIGSLLVD  208 (381)
Q Consensus       177 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  208 (381)
                      +++.|++..+++......+.++|..+...+.+
T Consensus       119 ~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~~  150 (156)
T PF05978_consen  119 TEETIGRNTGIFWAIFQSSLIFGNLFLFFIFQ  150 (156)
T ss_pred             CHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999998888887766543

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.49  E-value=4.7e-10  Score=107.63  Aligned_cols=148  Identities=22%  Similarity=0.184  Sum_probs=97.1

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH--H--hchH-----HHHHHHHHHHHH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTA--L--APDF-----IIMVVGRFVFGI  159 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~--~--~~~~-----~~~~~~r~l~G~  159 (381)
                      .+.+..  -.......+...++.++...+.||+|||+.++.+..+..++.+..+  .  .++-     ...+++-.+..+
T Consensus       283 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~  360 (451)
T PF00083_consen  283 AGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFA  360 (451)
T ss_pred             cccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeeccc
Confidence            455544  2233344455566777777999999999999999888887777664  1  1111     111112222222


Q ss_pred             HHh-hHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHH-HHHHHHhhcccc
Q 016882          160 GIG-LAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAV-IMGMGMWWLPAS  237 (381)
Q Consensus       160 ~~g-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~-~~~~~~~~~~~~  237 (381)
                      +.+ +..+....+..|.+|.+.|+++.++......++..+++.+...+.+..+++ ..+++.+++++ ..++..+++||+
T Consensus       361 ~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~-~~~~i~~~~~~i~~i~~~~~lpET  439 (451)
T PF00083_consen  361 FFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGW-GVFLIFAGVCLIAIIFVYFFLPET  439 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccchhhHHHHHHHHhheeEEEeeC
Confidence            222 344566688899999999999999999988999999998888877765224 34444444444 455666779998


Q ss_pred             hh
Q 016882          238 PR  239 (381)
Q Consensus       238 ~~  239 (381)
                      .+
T Consensus       440 ~g  441 (451)
T PF00083_consen  440 KG  441 (451)
T ss_pred             CC
Confidence            54

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=98.48  E-value=0.00018  Score=68.48  Aligned_cols=116  Identities=6%  Similarity=-0.034  Sum_probs=89.5

Q ss_pred             ChhHHHHHHHHHHHHHHHH-HHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHh--c-----------------------
Q 016882           92 SSVEIGLITSGSLYGALIG-SILAFNIADILGRRRELILAALLYLVGALVTALA--P-----------------------  145 (381)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~-~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~--~-----------------------  145 (381)
                      ..+...++-+...+...+. .++.+++++|++|++.+.+....+.....++++.  +                       
T Consensus        41 gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~  120 (472)
T TIGR00769        41 GAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFM  120 (472)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhH
Confidence            3467888888877766666 8999999999999999888766666655555543  1                       


Q ss_pred             ------hHHHHHHHHHHHHHHHhhHhH-HHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhh
Q 016882          146 ------DFIIMVVGRFVFGIGIGLAMH-AAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLV  207 (381)
Q Consensus       146 ------~~~~~~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  207 (381)
                            +.|...+......+-.....+ ..+.+++|.++.++-.+..++...+.++|..+++.+...+.
T Consensus       121 ~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       121 GFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  123334444555555555555 78999999999999999999999999999999999998887

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.48  E-value=1.2e-06  Score=85.08  Aligned_cols=146  Identities=20%  Similarity=0.253  Sum_probs=113.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHh--chHHHHHHHHHHHHHHHhhHhHHHHHH
Q 016882           95 EIGLITSGSLYGALIGSILAFNIADILGR-RRELILAALLYLVGALVTALA--PDFIIMVVGRFVFGIGIGLAMHAAPMY  171 (381)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~g~l~d~~Gr-k~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~r~l~G~~~g~~~~~~~~~  171 (381)
                      ..++......++..+++++.|.+..+++| |..++++.+++.++.-+++..  +|....+..-++.|++.|.........
T Consensus       350 ~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~  429 (599)
T PF06609_consen  350 EIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVI  429 (599)
T ss_pred             eeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHe
Confidence            57888888999999999999999998887 445556766666544444432  455566677889999999888888888


Q ss_pred             HHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhc-------------------------------------------
Q 016882          172 IAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVD-------------------------------------------  208 (381)
Q Consensus       172 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-------------------------------------------  208 (381)
                      ..-..|.++-+.+.++....-.+|+.+|..+...+..                                           
T Consensus       430 ~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~n~~~~~l~~~v~~a~~~aglp~~sl~~li~a~~~~~~~a~~~i  509 (599)
T PF06609_consen  430 AQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIFTNKLPKELPKYVAPAALAAGLPESSLPALIEALAAGNLEALAAI  509 (599)
T ss_pred             eEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHhHHHHHHHHHHhcCCChhhHHHHHHHHhccChhHHhhC
Confidence            8888899999999999999999988888777654442                                           


Q ss_pred             ------------------ccchhHHHHHhhHHHHHHHHHHHhhcccchhH
Q 016882          209 ------------------LVAGWRYMYGASTPLAVIMGMGMWWLPASPRW  240 (381)
Q Consensus       209 ------------------~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~  240 (381)
                                        ...++|+.|+....++++.++..+++++..++
T Consensus       510 PGit~~i~~a~~~A~~~aYa~ay~~V~~~siaFG~vaiiaa~fl~d~~~~  559 (599)
T PF06609_consen  510 PGITPEIIAAVVAAFQEAYAHAYRYVYYSSIAFGVVAIIAALFLGDIDKY  559 (599)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHh
Confidence                              01268999999999999999999999876544

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.47  E-value=6.5e-06  Score=78.64  Aligned_cols=142  Identities=13%  Similarity=0.024  Sum_probs=110.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHhch---------------------HHHHHHHH
Q 016882           97 GLITSGSLYGALIGSILAFNIADILGR-RRELILAALLYLVGALVTALAPD---------------------FIIMVVGR  154 (381)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~g~l~d~~Gr-k~~l~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~r  154 (381)
                      .+....+.+...+.+++..++.+|+|+ |+...++.++.+++.....+.++                     .+..++..
T Consensus       308 ~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  387 (477)
T TIGR01301       308 AFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVF  387 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHH
Confidence            344555666667888888999999994 77778888888888877765443                     36677888


Q ss_pred             HHHHHHHhhHhHHHHHHHHhhCCc--ccchhHHhHHHHHHHHHHHHHHHHHHHhhcccc-hhHHHHHhhHHHHHHHHHHH
Q 016882          155 FVFGIGIGLAMHAAPMYIAETAPT--PMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVA-GWRYMYGASTPLAVIMGMGM  231 (381)
Q Consensus       155 ~l~G~~~g~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~w~~~f~i~~~~~~~~~~~~  231 (381)
                      .+.|+..+.....-.+++++..++  ++.|..+|+.+.+..+.+++..+..+.+.+..+ +-.+++.+.++..++..++.
T Consensus       388 ~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~  467 (477)
T TIGR01301       388 AILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLA  467 (477)
T ss_pred             HHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHH
Confidence            899999999999999999999995  556999999999999999999988887554432 45678888888888865555


Q ss_pred             h-hcccch
Q 016882          232 W-WLPASP  238 (381)
Q Consensus       232 ~-~~~~~~  238 (381)
                      + .+|+++
T Consensus       468 ~~~~~~~~  475 (477)
T TIGR01301       468 LILLPRPR  475 (477)
T ss_pred             HHhCCCCC
Confidence            4 477654

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.44  E-value=1e-05  Score=79.07  Aligned_cols=147  Identities=17%  Similarity=0.150  Sum_probs=96.2

Q ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhchH-------------HHHH-HHHH
Q 016882           90 DLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDF-------------IIMV-VGRF  155 (381)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~-------------~~~~-~~r~  155 (381)
                      |.+... .+...+..+...++..++..+.||+|||+.++.+...+.++.++.+.....             ..+. ++-+
T Consensus       326 g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (513)
T KOG0254|consen  326 GLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLF  404 (513)
T ss_pred             CCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHH
Confidence            444333 555666777777888888999999999999999999999999887764211             1111 2222


Q ss_pred             HHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHH-HH-HHHhh
Q 016882          156 VFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVI-MG-MGMWW  233 (381)
Q Consensus       156 l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~-~~-~~~~~  233 (381)
                      +..+. .+..+....+.+|.+|.+.|+.+.++......+...+-......+.+.. ++...|.+.+..+.+ .. ...++
T Consensus       405 v~~f~-~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~-~~~~~f~~f~~~~~~~~~~fv~~~  482 (513)
T KOG0254|consen  405 IFSFA-IGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEAL-GIGGTFGYFGGICLLSLIIFVFFF  482 (513)
T ss_pred             HHHHh-cccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhc-cccchHHHHHHHHHHHHHHHheEE
Confidence            23332 3344555678899999999999999987766666655544444444443 334555555555444 33 45566


Q ss_pred             cccchh
Q 016882          234 LPASPR  239 (381)
Q Consensus       234 ~~~~~~  239 (381)
                      .||+..
T Consensus       483 ~pETkg  488 (513)
T KOG0254|consen  483 VPETKG  488 (513)
T ss_pred             cccCCC
Confidence            899854

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.43  E-value=7.9e-06  Score=74.34  Aligned_cols=157  Identities=13%  Similarity=0.088  Sum_probs=121.4

Q ss_pred             hhhcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 016882           62 LLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVT  141 (381)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~  141 (381)
                      |++.-.....+..++.+..+.      .|++..+.....+.+..+.++|.+++.++..|+...|.+.+..+...+.++..
T Consensus       246 FlYVG~Eva~gsfl~~y~~~~------~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~  319 (422)
T COG0738         246 FLYVGAEVAIGSFLVSYLEEL------LGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAV  319 (422)
T ss_pred             HHHHhHHHHHHHHHHHHHHhc------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence            444444455555566655431      58899999999999999999999999999999999999999988888888888


Q ss_pred             HHhchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhH
Q 016882          142 ALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGAST  221 (381)
Q Consensus       142 ~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~  221 (381)
                      +++++...++ +-++.|+..+..+|...+...+..| ++ ....+..-....+|+.+.|.+.|++.+.. +-...+.+..
T Consensus       320 ~l~~g~v~~~-~l~~ig~F~simfPTIfslal~~l~-~~-ts~~s~~l~maivGGAiiP~l~G~i~d~~-g~~~~~~~~p  395 (422)
T COG0738         320 ALIGGVVALY-ALFLIGLFNSIMFPTIFSLALKNLG-EH-TSVGSGLLVMAIVGGAIIPPLQGVIADMF-GIQLTFLIVP  395 (422)
T ss_pred             HHhcChHHHH-HHHHHHHHhHHHHHHHHHHHHhccC-cc-ccccceeeeeheecchHHHHHHHHHHHhh-hhHHHHHHHH
Confidence            8888865544 4467888899999999999999998 33 44445555556789999999999999987 6666666444


Q ss_pred             HHHHHHH
Q 016882          222 PLAVIMG  228 (381)
Q Consensus       222 ~~~~~~~  228 (381)
                      .+|.+.+
T Consensus       396 llc~lyV  402 (422)
T COG0738         396 LLCYLYV  402 (422)
T ss_pred             HHHHHHH
Confidence            4444433

>PTZ00207 hypothetical protein; Provisional

Probab=98.41  E-value=1.6e-05  Score=77.72  Aligned_cols=142  Identities=10%  Similarity=-0.042  Sum_probs=102.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh---------hchHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHHH
Q 016882           99 ITSGSLYGALIGSILAFNIADI---------LGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAP  169 (381)
Q Consensus        99 ~~~~~~~~~~~~~~~~g~l~d~---------~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~  169 (381)
                      +.++..++..+|.+..|.+...         +.|--.+.+..+ +.++.+++++.-....+++..++.|++.|..+++..
T Consensus       396 ~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~  474 (591)
T PTZ00207        396 LTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIA  474 (591)
T ss_pred             ehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHH
Confidence            6778888888888888877722         222223334444 556666666654436899999999999999999999


Q ss_pred             HHHHhhCCcccchhHHhHHHHHHHHHHHHH-HHHHHHhhcccc------------hhHHHHHhhHHHHHHHHHHHhh-cc
Q 016882          170 MYIAETAPTPMRGQLISLKEFFIVLGMVGG-YGIGSLLVDLVA------------GWRYMYGASTPLAVIMGMGMWW-LP  235 (381)
Q Consensus       170 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~-~~~~~~l~~~~~------------~w~~~f~i~~~~~~~~~~~~~~-~~  235 (381)
                      ..++|+|. |+-|+...+......+|..+- ..+.|.+.+...            =.|..|++.+.++++.+++... .-
T Consensus       475 ~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~  553 (591)
T PTZ00207        475 LVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHL  553 (591)
T ss_pred             HHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheee
Confidence            99999999 888999999999999998776 566776664321            2678899998888886655443 33


Q ss_pred             cchhHHH
Q 016882          236 ASPRWLL  242 (381)
Q Consensus       236 ~~~~~~~  242 (381)
                      ++.+++.
T Consensus       554 R~r~~y~  560 (591)
T PTZ00207        554 QYRRLCL  560 (591)
T ss_pred             ehHHHHH
Confidence            4444443

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.29  E-value=2.7e-06  Score=60.05  Aligned_cols=80  Identities=23%  Similarity=0.241  Sum_probs=71.8

Q ss_pred             hcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 016882           64 YGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTAL  143 (381)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~  143 (381)
                      .|+.+..+.+.+|.+.++       .++|.++.+++.+.+++||.+|++...++.++..+++.+..+.+...+....+++
T Consensus         4 mGigRFayTplLP~M~~~-------~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~   76 (85)
T PF06779_consen    4 MGIGRFAYTPLLPLMQAD-------GGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMAL   76 (85)
T ss_pred             hhhHHHHHHhHhHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence            355667778889999988       7999999999999999999999999999999988899999999999999999999


Q ss_pred             hchHHHH
Q 016882          144 APDFIIM  150 (381)
Q Consensus       144 ~~~~~~~  150 (381)
                      .++.+..
T Consensus        77 ~~~~~~w   83 (85)
T PF06779_consen   77 THSFWLW   83 (85)
T ss_pred             HhchHHH
Confidence            8887654

Note that many members are hypothetical proteins.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.22  E-value=0.00025  Score=67.36  Aligned_cols=135  Identities=15%  Similarity=0.161  Sum_probs=89.3

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH-----HhchHHHHHHHHHHHHHHHhh
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTA-----LAPDFIIMVVGRFVFGIGIGL  163 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~r~l~G~~~g~  163 (381)
                      +|.+..+.++.......+..+++.+.+.+.++.++++.+.....+..++.++..     ..++++..+++.++.++|.+.
T Consensus       249 ~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~G~~~  328 (413)
T PRK15403        249 GGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSVLGTSLYAFGIGL  328 (413)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHH
Confidence            589999999998888888888888888876554444443332222222222222     123444456788888999888


Q ss_pred             HhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHH
Q 016882          164 AMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVI  226 (381)
Q Consensus       164 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~  226 (381)
                      ..+......- .-....+|++.++.+.....+..+++..++++...  +-++.|...+++..+
T Consensus       329 ~~p~~~~~al-~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~  388 (413)
T PRK15403        329 IFPTLFRFTL-FSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN--GGRLPFHLLAVVAGV  388 (413)
T ss_pred             HhHHHHHHHh-ccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCchHHHHHHHHHHH
Confidence            8777765332 11233579999999988888889999998888665  345566555554443

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.14  E-value=0.00026  Score=67.47  Aligned_cols=119  Identities=17%  Similarity=0.201  Sum_probs=107.6

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHH-HHHHhhchHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAF-NIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHA  167 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~  167 (381)
                      ++++..+.+.+.+.......+++.+.. .+...+|-|+.+.+|++.-.+.....+++++.|+++....+.++. +...+.
T Consensus       272 f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~-~~~~pa  350 (463)
T KOG2816|consen  272 FGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALA-GIVFPA  350 (463)
T ss_pred             cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhh-cchhHH
Confidence            799999999999998888888888777 778889999999999999999999999999999999988777764 557888


Q ss_pred             HHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhc
Q 016882          168 APMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVD  208 (381)
Q Consensus       168 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  208 (381)
                      ..++++.+.+++++|+..++.....++..+++|.+-+.+..
T Consensus       351 ~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~  391 (463)
T KOG2816|consen  351 IRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFA  391 (463)
T ss_pred             HHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence            89999999999999999999999999999999999888764

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.06  E-value=2.9e-05  Score=70.13  Aligned_cols=137  Identities=17%  Similarity=0.173  Sum_probs=114.3

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhc--hHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILG--RRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMH  166 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~G--rk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~  166 (381)
                      +|.++.|.|-+.+...++..+.+....+..||..  -+-.+..++.+..-..++.+.++....+.++-.+..+..+..-+
T Consensus       292 fg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~~vt  371 (451)
T KOG2615|consen  292 FGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTASVVT  371 (451)
T ss_pred             cCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHhhH
Confidence            8999999999999999999999999888898887  67777777777777777778888888899999999998888888


Q ss_pred             HHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHH
Q 016882          167 AAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAV  225 (381)
Q Consensus       167 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~  225 (381)
                      ....++....|.++||..+|+.....+++-.+||.++|.+..+..+=+..+...+.+.+
T Consensus       372 ~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~~~~~a~~~~~~L~~  430 (451)
T KOG2615|consen  372 CLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQGAQPAYIAWGALLL  430 (451)
T ss_pred             HHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEecCCCceeeehHHHHH
Confidence            88999999999999999999999999999999999998887554333444444443333

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.04  E-value=0.00014  Score=69.91  Aligned_cols=162  Identities=14%  Similarity=-0.040  Sum_probs=103.6

Q ss_pred             HHHHHHHhhhcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHh----hchHHHHHHH
Q 016882           55 LFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADI----LGRRRELILA  130 (381)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~Grk~~l~~~  130 (381)
                      ...+++.++.....+.....+|.+.++.      .|.+..+.+.+.+.+.++.+++.++.|+++||    ..+|..+...
T Consensus       276 w~~~l~~~~~~lv~~~~~~~lpl~l~~~------~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~  349 (495)
T KOG2533|consen  276 WPFSLCYFFLKLVNYGFSYWLPLYLKSN------GGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVF  349 (495)
T ss_pred             HHHHHHHHHHhhccccHHHHHHHHHHcC------CCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            4445555666666676777777776641      47899999999999999999999999999999    6777777766


Q ss_pred             HHHHHHHH-HHHHHhchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCccc-chhHHhHHHHHHHHHHHHHHHHHHHhh-
Q 016882          131 ALLYLVGA-LVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPM-RGQLISLKEFFIVLGMVGGYGIGSLLV-  207 (381)
Q Consensus       131 ~~~~~~~~-~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~g~~~~~~~~~~l~-  207 (381)
                      +.+..+.. +......+.+.....-.....+.+...+......++....+. |-...+....+.+.+..+++.+-.... 
T Consensus       350 ~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~a  429 (495)
T KOG2533|consen  350 LCLYAIIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDA  429 (495)
T ss_pred             HHHHHHHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccC
Confidence            66665544 444344334444444444445556566666777777665443 334444455566666555555544433 


Q ss_pred             cccchhHHHHHhhHHH
Q 016882          208 DLVAGWRYMYGASTPL  223 (381)
Q Consensus       208 ~~~~~w~~~f~i~~~~  223 (381)
                      +.+ +|.+.|......
T Consensus       430 p~y-~~~~~f~~~~~~  444 (495)
T KOG2533|consen  430 PRY-GWGAVFYMLVAA  444 (495)
T ss_pred             cch-hhhhHHHHHHHH
Confidence            334 777777444333

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.03  E-value=0.00024  Score=69.68  Aligned_cols=133  Identities=21%  Similarity=0.141  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhchHH---HHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccc
Q 016882          105 YGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFI---IMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMR  181 (381)
Q Consensus       105 ~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r  181 (381)
                      ..........+.+.|++|||.....+.++..++.++.+......   ...+...+..++.+..+.....+.+|++|...|
T Consensus       361 ~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r  440 (521)
T KOG0255|consen  361 LVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVR  440 (521)
T ss_pred             HHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHH
Confidence            35555555668899999999999999999999999998876433   355566666666777777779999999999999


Q ss_pred             hhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHH-HHHHHhhcccchh
Q 016882          182 GQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVI-MGMGMWWLPASPR  239 (381)
Q Consensus       182 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~-~~~~~~~~~~~~~  239 (381)
                      ..+.+.......+|.+++|.+..........+..  .+.+....+ .++..+++||+..
T Consensus       441 ~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~lpet~~  497 (521)
T KOG0255|consen  441 NTAVGAISAAARLGSILAPLFPLLLRQMFPLLGL--ILFGWLALLLGLLSLLLLPETKG  497 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchH--HHHHHHHHHHHHHHHhcCcccCC
Confidence            9999999999999999999998766543222322  223444444 4455578999854

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.01  E-value=2.4e-05  Score=54.79  Aligned_cols=65  Identities=20%  Similarity=0.240  Sum_probs=53.4

Q ss_pred             hhhcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 016882           62 LLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALL  133 (381)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~  133 (381)
                      +.+.-..+...+..+.+.++       .|++..++|.+.++..+...++++++|.++||+++++.++.+..+
T Consensus        10 f~~f~~~g~~~Pfl~~~~~~-------~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~   74 (77)
T PF12832_consen   10 FFYFAALGCLYPFLPLYLKQ-------LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHHHHhhhhHhhhh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence            44444555666667777676       799999999999999999999999999999999998888776544

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.99  E-value=0.00034  Score=67.34  Aligned_cols=133  Identities=14%  Similarity=0.092  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhch--H----H-HHHHHHHHHHHHHHHHHHh---------chHHHHHHHHHHHH
Q 016882           95 EIGLITSGSLYGALIGSILAFNIADILGR--R----R-ELILAALLYLVGALVTALA---------PDFIIMVVGRFVFG  158 (381)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~g~l~d~~Gr--k----~-~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~r~l~G  158 (381)
                      ..+|+.+++.+..++.+|+.+++-.|.+|  |    + =+.+|+++.+++.+.+.++         .+.+++++..++.+
T Consensus       309 p~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t  388 (493)
T PRK15462        309 PTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMG  388 (493)
T ss_pred             CHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHH
Confidence            35777888888888889888888777633  2    1 1567888888777666431         25677889999999


Q ss_pred             HHHhhHhHHHHHHHHhhCCcccchhHHhHHHHH-HHHHHHHHHHHHHHhhcc-----------cchhHHHHHhhHHHHHH
Q 016882          159 IGIGLAMHAAPMYIAETAPTPMRGQLISLKEFF-IVLGMVGGYGIGSLLVDL-----------VAGWRYMYGASTPLAVI  226 (381)
Q Consensus       159 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~~~~~l~~~-----------~~~w~~~f~i~~~~~~~  226 (381)
                      +|+-+..|...++++++.|++.||+.+|.+... ..+|..++..+++.....           ...+...|...++..++
T Consensus       389 ~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~  468 (493)
T PRK15462        389 FAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFDASGAINYSINAYIEVFDQITWGALA  468 (493)
T ss_pred             HHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccchhhhHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999764 467777777776665311           11355677777766654


Q ss_pred             H
Q 016882          227 M  227 (381)
Q Consensus       227 ~  227 (381)
                      +
T Consensus       469 ~  469 (493)
T PRK15462        469 C  469 (493)
T ss_pred             H
Confidence            4

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.96  E-value=0.00058  Score=64.44  Aligned_cols=107  Identities=15%  Similarity=0.102  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcc
Q 016882          100 TSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTP  179 (381)
Q Consensus       100 ~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~  179 (381)
                      .++.+....+++++.+.+.|+.|+|..+.++............+. |-+-++.+..+.|+|.+..+...-.|+.|..+++
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~-N~y~~yfssallG~Gaallw~GqG~ylt~~st~~  134 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFP-NSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE  134 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc-chHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence            777888889999999999999999999999999988776666554 5667888999999999999999999999999999


Q ss_pred             cchhHHhHHHHHHHHHHHHHHHHHHHhh
Q 016882          180 MRGQLISLKEFFIVLGMVGGYGIGSLLV  207 (381)
Q Consensus       180 ~r~~~~~~~~~~~~~g~~~~~~~~~~l~  207 (381)
                      .+.+..++.......+.++|..+...+.
T Consensus       135 tie~Nisi~Wai~~~~li~Ggi~l~~~~  162 (461)
T KOG3098|consen  135 TIERNISIFWAIGQSSLIIGGIILFIYF  162 (461)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHhheeee
Confidence            9999999999999999888877655544

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=97.94  E-value=0.019  Score=54.16  Aligned_cols=118  Identities=13%  Similarity=0.055  Sum_probs=87.4

Q ss_pred             ChhHHHHHHHHHHH-HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHh----------------------c-h-
Q 016882           92 SSVEIGLITSGSLY-GALIGSILAFNIADILGRRRELILAALLYLVGALVTALA----------------------P-D-  146 (381)
Q Consensus        92 ~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~----------------------~-~-  146 (381)
                      .++...++-+..-+ +..+..++.+++.+++.|.+++......+....+++++.                      + + 
T Consensus        59 gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l  138 (509)
T COG3202          59 GAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFL  138 (509)
T ss_pred             cchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccc
Confidence            45667777777777 778889999999999999999887777766666666552                      1 1 


Q ss_pred             --------HHHHHHHHHHHHHHHhhHhH-HHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcc
Q 016882          147 --------FIIMVVGRFVFGIGIGLAMH-AAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDL  209 (381)
Q Consensus       147 --------~~~~~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  209 (381)
                              .|...+...+.-+-...... ..+....|.+..++-.+..++++.+.+++..++..+..++..+
T Consensus       139 ~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~  210 (509)
T COG3202         139 KWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH  210 (509)
T ss_pred             eeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence                    13333333333333333333 5677889999999999999999999999999999999998764

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.92  E-value=0.0047  Score=58.32  Aligned_cols=133  Identities=6%  Similarity=-0.098  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH------h--c----hHHHHH---HHHHHHHHH
Q 016882           96 IGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTAL------A--P----DFIIMV---VGRFVFGIG  160 (381)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~------~--~----~~~~~~---~~r~l~G~~  160 (381)
                      .+...-.-.+..++.++..|.+.||..|.+++-...+..-++..+.+.      .  .    +-+...   +.-.+.|..
T Consensus        40 ~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i  119 (432)
T PF06963_consen   40 VSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAI  119 (432)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHH
Confidence            334444455677788888999999999988876665554433322221      1  1    112222   111222211


Q ss_pred             HhhH-hHHHHHHHHhhC------CcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHH
Q 016882          161 IGLA-MHAAPMYIAETA------PTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGM  229 (381)
Q Consensus       161 ~g~~-~~~~~~~~~~~~------~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~  229 (381)
                      .-.. .....+.=-||.      +++.+.+.++..--.=-+..+++|.+.|.+.... +.+...++.++..++.+.
T Consensus       120 ~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~-s~~~~~~~i~~~N~~S~~  194 (432)
T PF06963_consen  120 ERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFA-SPVIAAIFIAGWNLASVF  194 (432)
T ss_pred             HHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CHHHHHHHHHHHHHHHHH
Confidence            1111 111111112332      3445556666666666678899999999999876 888887777777776443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=97.84  E-value=6.7e-05  Score=69.36  Aligned_cols=118  Identities=24%  Similarity=0.352  Sum_probs=90.3

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHh----hchHHHHHH-HHHHHHHHHHHHHHhchH----------------
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADI----LGRRRELIL-AALLYLVGALVTALAPDF----------------  147 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~Grk~~l~~-~~~~~~~~~~~~~~~~~~----------------  147 (381)
                      +|++....+.+.-..-+...+.+++.|..+||    |||||.++. +.++..++.++..++.++                
T Consensus        62 lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~ra  141 (498)
T KOG0637|consen   62 LGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRA  141 (498)
T ss_pred             cCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHH
Confidence            68888888888878888888999999999995    898766655 555566666666665432                


Q ss_pred             -HHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchh-HHhHHHHHHHHHHHHHHHHHHHh
Q 016882          148 -IIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQ-LISLKEFFIVLGMVGGYGIGSLL  206 (381)
Q Consensus       148 -~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~~~~g~~~~~~~~~~l  206 (381)
                       ..++++.-+.-++....+..+-+++.|+...+++-+ +++++....++|.++|..+++.+
T Consensus       142 i~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~  202 (498)
T KOG0637|consen  142 IVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYL  202 (498)
T ss_pred             HHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccccc
Confidence             234444555556677788889999999998777777 99999999999999998888744

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.78  E-value=0.00038  Score=64.59  Aligned_cols=115  Identities=18%  Similarity=0.048  Sum_probs=85.4

Q ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH-----HHHHHHHHhchHHHHHHHHHHHHHHHhhH
Q 016882           90 DLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYL-----VGALVTALAPDFIIMVVGRFVFGIGIGLA  164 (381)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~r~l~G~~~g~~  164 (381)
                      .-..++..+....+.+|-.++.--...+  |+  |+..+...+-..     +.....-+.++.|.+++.-+..|+..|..
T Consensus       277 ~~~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~  352 (402)
T PF02487_consen  277 FSPRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGAS  352 (402)
T ss_pred             CCHHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHH
Confidence            3346788888888888877776543322  33  333333322222     22223344678899989999999999999


Q ss_pred             hHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhc
Q 016882          165 MHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVD  208 (381)
Q Consensus       165 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  208 (381)
                      +......+.|-.|+++|..++|....+-++|.+++..++-++-+
T Consensus       353 YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le~  396 (402)
T PF02487_consen  353 YVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLEP  396 (402)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998877643

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=97.76  E-value=0.00027  Score=66.10  Aligned_cols=109  Identities=14%  Similarity=0.225  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhc---------hHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcc---cchhHHhHHHHHH
Q 016882          125 RELILAALLYLVGALVTALAP---------DFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTP---MRGQLISLKEFFI  192 (381)
Q Consensus       125 ~~l~~~~~~~~~~~~~~~~~~---------~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~---~r~~~~~~~~~~~  192 (381)
                      ++++++.++..+|.++..++.         +.+.++++..+.++|.|+.=+...++.+|-++++   +|.+...+++.+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            567888888888888854432         2367889999999999999999999999999865   4566777789999


Q ss_pred             HHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHhhc
Q 016882          193 VLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWL  234 (381)
Q Consensus       193 ~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~~~  234 (381)
                      ++|..++..+.+++.+.. +|.+.|.+.++..++.++..+..
T Consensus        82 n~G~~~~~~~~~~i~~~~-~~~~~f~i~~~~~~~~~~~f~~~  122 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNY-GWFLGFGIPAIGMLLALIVFLSG  122 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS--HHHHHHHHHHHHHHHHHHHHCC
T ss_pred             hhhhHhhcccchhhcccc-chhhhhhHHHHHHHHHHHHHHhC
Confidence            999999999999999887 99999999999988877666553

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=97.68  E-value=0.058  Score=51.98  Aligned_cols=117  Identities=11%  Similarity=0.055  Sum_probs=81.7

Q ss_pred             ChhHHHHHHHHHHH-HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHh--c-----------------------
Q 016882           92 SSVEIGLITSGSLY-GALIGSILAFNIADILGRRRELILAALLYLVGALVTALA--P-----------------------  145 (381)
Q Consensus        92 ~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~--~-----------------------  145 (381)
                      .++.+..+-....+ +..+...+..+++++++|.+++.+....+.....++++.  +                       
T Consensus        56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~  135 (491)
T PF03219_consen   56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK  135 (491)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence            34556666554444 556667789999999999998877666655555544442  0                       


Q ss_pred             ------hHHHHHHHHHHHHHHHhhHhH-HHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhc
Q 016882          146 ------DFIIMVVGRFVFGIGIGLAMH-AAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVD  208 (381)
Q Consensus       146 ------~~~~~~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  208 (381)
                            +.|...+...+.-+-.....+ ..+.+.+|.++.++-.+..+++..+.++|..++..+...+.+
T Consensus       136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  123333333344433333333 568899999999999999999999999999999999988887

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.66  E-value=0.0026  Score=60.65  Aligned_cols=149  Identities=17%  Similarity=0.206  Sum_probs=111.0

Q ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHh----------chHHHHHHHHHHHHH
Q 016882           90 DLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALA----------PDFIIMVVGRFVFGI  159 (381)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~----------~~~~~~~~~r~l~G~  159 (381)
                      |+++...+.+..+..++..++..+...+..++.-|+++....++.++..+.-...          ++.+-.+.--++..+
T Consensus       251 ~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~  330 (433)
T PF03092_consen  251 HFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEV  330 (433)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHH
Confidence            5899999999999999999999999988888888988888777766555432211          122222334456666


Q ss_pred             HHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccc-------hhHHHHHhhHHHHHHHHHHHh
Q 016882          160 GIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVA-------GWRYMYGASTPLAVIMGMGMW  232 (381)
Q Consensus       160 ~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-------~w~~~f~i~~~~~~~~~~~~~  232 (381)
                      ..+..+-....+++|+.|+...|+..++.....++|..++..++..+.+..+       +-.+..++..++.++.+.+..
T Consensus       331 ~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~  410 (433)
T PF03092_consen  331 IGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLF  410 (433)
T ss_pred             HHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHH
Confidence            6777777778899999999999999999999999999999999988875431       234556666666666666666


Q ss_pred             hcccch
Q 016882          233 WLPASP  238 (381)
Q Consensus       233 ~~~~~~  238 (381)
                      ++|+..
T Consensus       411 lLp~~~  416 (433)
T PF03092_consen  411 LLPPQK  416 (433)
T ss_pred             HcCCCc
Confidence            677643

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.62  E-value=0.003  Score=58.70  Aligned_cols=133  Identities=14%  Similarity=0.057  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhC
Q 016882           97 GLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETA  176 (381)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~  176 (381)
                      +.+.-+-.+-..+..+.+.++.+|+.-+.=+.+..++..++.++.+++++.+.-+++-.+.+++.|........+.. .+
T Consensus        62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y  140 (402)
T PF02487_consen   62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FY  140 (402)
T ss_pred             hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hc
Confidence            33444455566677777888888887555556667788888888899999999889999999999999888888754 55


Q ss_pred             CcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHhhc
Q 016882          177 PTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWL  234 (381)
Q Consensus       177 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~~~  234 (381)
                      ++    ...+-+..+.+.++++|+..-..+...-.+-|..+++..++.++.++.++++
T Consensus       141 ~~----~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~  194 (402)
T PF02487_consen  141 GK----SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFL  194 (402)
T ss_pred             Cc----cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHh
Confidence            53    3467777888888888887766665521245777887777766655555543

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PRK03612 spermidine synthase; Provisional

Probab=97.57  E-value=0.011  Score=57.70  Aligned_cols=130  Identities=13%  Similarity=0.030  Sum_probs=76.7

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHH-HHHHHH-HHH-HHHH---HhchH-HHHHHHHHHHHHHH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELIL-AALLYL-VGA-LVTA---LAPDF-IIMVVGRFVFGIGI  161 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~-~~~~~~-~~~-~~~~---~~~~~-~~~~~~r~l~G~~~  161 (381)
                      +|-+..+.+.+.+++..|.++|+.+++++.++.-++....- +..+.+ ++. ++..   ..... ..++..-++.++..
T Consensus        45 ~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~  124 (521)
T PRK03612         45 LGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLI  124 (521)
T ss_pred             hCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57788899999999999999999999988744333322111 111111 111 1111   11111 12233445677888


Q ss_pred             hhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhc-ccchhHHHHHh
Q 016882          162 GLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVD-LVAGWRYMYGA  219 (381)
Q Consensus       162 g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-~~~~w~~~f~i  219 (381)
                      |+..|....+..+... ++-+...|-.+....+|+++|.++.+++.- ..+..+..+++
T Consensus       125 G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~  182 (521)
T PRK03612        125 GMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALT  182 (521)
T ss_pred             HHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence            8888887766654332 234566777778888888888888777663 44333443333

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=97.53  E-value=0.0027  Score=60.36  Aligned_cols=89  Identities=16%  Similarity=-0.003  Sum_probs=50.0

Q ss_pred             hHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHH---hh-cc---cchhHHHHH
Q 016882          146 DFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSL---LV-DL---VAGWRYMYG  218 (381)
Q Consensus       146 ~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~---l~-~~---~~~w~~~f~  218 (381)
                      .++..++.-++.|++.+..+.....+.+ .+|++.    +..+..+.+++++++..+--.   .. +.   ..+=...|.
T Consensus       105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~~----~~a~~~G~g~aGv~~s~~~ii~~a~~~~~~~~~~~a~~YF~  179 (437)
T TIGR00939       105 FFVTTMASVVIINSGMALLQGSLFGLAG-VFPSTY----SSAVMSGQGLAGVLTSLAMILVKASGNDSHGLKKSALGYFG  179 (437)
T ss_pred             HHHHHHHHHHHHHhhhhhhcccchhhcc-cCCHHH----HHHHHhcchhHHHHHHHHHHHHHHhcCCccchhhhhhhHHH
Confidence            4666667777889998888888777665 566443    444444455555444433221   11 21   112224455


Q ss_pred             hhHHHHHHHHHHHhhcccchh
Q 016882          219 ASTPLAVIMGMGMWWLPASPR  239 (381)
Q Consensus       219 i~~~~~~~~~~~~~~~~~~~~  239 (381)
                      +..++.+++++.+..+++.|-
T Consensus       180 ~a~~v~l~~i~~~~~l~k~~~  200 (437)
T TIGR00939       180 TPCVVQLICIVCYLLLPKLPF  200 (437)
T ss_pred             HHHHHHHHHHHHHHHHhcCHH
Confidence            555556666666666776653

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=97.52  E-value=0.0015  Score=58.58  Aligned_cols=153  Identities=21%  Similarity=0.214  Sum_probs=113.8

Q ss_pred             ccCChhHHH-HHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHH
Q 016882           89 YDLSSVEIG-LITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHA  167 (381)
Q Consensus        89 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~  167 (381)
                      .+++..+.. -+.-+..-.+.+.-++.=.+.|-.--|+++++-.+......++..+.++.+.+-+.-++.|...+ ...+
T Consensus        36 ~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tA-aEIA  114 (433)
T KOG3810|consen   36 KNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATA-AEIA  114 (433)
T ss_pred             CCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHH-HHHh
Confidence            566665543 12223344555666666678999999999998888888888888999999999999999998776 5566


Q ss_pred             HHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhccc-chhHHHHHhhHHHHHHHHHHHhhcccchhHHH
Q 016882          168 APMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV-AGWRYMYGASTPLAVIMGMGMWWLPASPRWLL  242 (381)
Q Consensus       168 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~  242 (381)
                      -++|+-+..+++++.++.+..-...-.|...|..++..++... .++...=.+......+..+..+++|..+|.+.
T Consensus       115 YysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~  190 (433)
T KOG3810|consen  115 YYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLY  190 (433)
T ss_pred             hhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhh
Confidence            7889999999999999999998888889999988888888643 13444444555555566677777887665433

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=97.48  E-value=0.0041  Score=58.64  Aligned_cols=137  Identities=16%  Similarity=0.175  Sum_probs=102.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhchH-------HHHHHHHHHHHHHHHHHHHh----------chHHHHHHHHHH
Q 016882           94 VEIGLITSGSLYGALIGSILAFNIADILGRR-------RELILAALLYLVGALVTALA----------PDFIIMVVGRFV  156 (381)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk-------~~l~~~~~~~~~~~~~~~~~----------~~~~~~~~~r~l  156 (381)
                      -..+|..+...+..++.+++..++-.+.+++       .-+-+|+++.+.+.++....          .+.++++...++
T Consensus       324 vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l  403 (498)
T COG3104         324 VPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVL  403 (498)
T ss_pred             cCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHH
Confidence            3457788888888999998888888885543       22345566666555554443          247889999999


Q ss_pred             HHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHh------hcccchhHHHHHhhHHHHHHHHHH
Q 016882          157 FGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLL------VDLVAGWRYMYGASTPLAVIMGMG  230 (381)
Q Consensus       157 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l------~~~~~~w~~~f~i~~~~~~~~~~~  230 (381)
                      +++|.=+..|...+++....|++-.+..++.+......|..++..+++.-      .+.. .....|+..+...++..+.
T Consensus       404 ~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~-~~~~~F~~~g~v~i~~~~~  482 (498)
T COG3104         404 QSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAF-IEGRVFGTIGVVAIVIGIL  482 (498)
T ss_pred             HHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhh-hhhhhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999988888888888777732      1222 4556777777776664443


Q ss_pred             H
Q 016882          231 M  231 (381)
Q Consensus       231 ~  231 (381)
                      .
T Consensus       483 ~  483 (498)
T COG3104         483 L  483 (498)
T ss_pred             H
Confidence            3

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=97.41  E-value=0.0078  Score=54.76  Aligned_cols=143  Identities=15%  Similarity=0.082  Sum_probs=91.5

Q ss_pred             HHHHHHHhhhcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHH-----hhchHHHHHH
Q 016882           55 LFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIAD-----ILGRRRELIL  129 (381)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-----~~Grk~~l~~  129 (381)
                      ....+.+...|.-.+... .+|.+.+.       -|.|-++.+....++.  -..--+++.++.|     |+||||..++
T Consensus        34 llLl~LYllQGiP~GL~~-~iP~lL~a-------k~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~y~k~~GrrksWvv  103 (510)
T KOG3574|consen   34 LLLLFLYLLQGIPLGLIG-AIPLLLQA-------KGVSYTSQAIFSFAYW--PFSLKLLWAPIVDSVYSKRFGRRKSWVV  103 (510)
T ss_pred             HHHHHHHHHcCCchhHhh-hhHHHhcC-------CCcchhhhhhhhhhhh--HHHHHHHHHhhhHHHHHHhhccccceee
Confidence            334455678888888877 78887774       4777777665544431  1234567888888     9999887554


Q ss_pred             -HHHHHHHHHHHHHHh-----------chHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHH
Q 016882          130 -AALLYLVGALVTALA-----------PDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMV  197 (381)
Q Consensus       130 -~~~~~~~~~~~~~~~-----------~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~  197 (381)
                       ...+.+..+...+..           ++...+....++.-+..+.--.++-.+.-.+..+++.|.+......+...|.+
T Consensus       104 p~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~Gyf  183 (510)
T KOG3574|consen  104 PCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYF  183 (510)
T ss_pred             ehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHH
Confidence             333333333333331           23333333445555666666666667777788889999998888888888888


Q ss_pred             HHHHHHHHhh
Q 016882          198 GGYGIGSLLV  207 (381)
Q Consensus       198 ~~~~~~~~l~  207 (381)
                      ++..+.-.+.
T Consensus       184 L~~~ifLaL~  193 (510)
T KOG3574|consen  184 LGNVVFLALE  193 (510)
T ss_pred             hhcceeeEec
Confidence            8776654444

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=97.15  E-value=0.0072  Score=59.31  Aligned_cols=144  Identities=15%  Similarity=0.127  Sum_probs=111.1

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-chHHHHHHHHHHHHHHHHHHHHhch---------------------
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADIL-GRRRELILAALLYLVGALVTALAPD---------------------  146 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-Grk~~l~~~~~~~~~~~~~~~~~~~---------------------  146 (381)
                      +|.+...+.-..+.+.-......+.++.++|-| ||-+++.++.++..++.++..++..                     
T Consensus        68 ~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~  147 (571)
T KOG1237|consen   68 LHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESP  147 (571)
T ss_pred             hccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCc
Confidence            677777777778888888888889999999975 8889998888888877655443211                     


Q ss_pred             ----HHHHHHHHHHHHHHHhhHhHHHHHHHHhhCC---c-c--cchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHH
Q 016882          147 ----FIIMVVGRFVFGIGIGLAMHAAPMYIAETAP---T-P--MRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYM  216 (381)
Q Consensus       147 ----~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~---~-~--~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~  216 (381)
                          ...++.+.-+..+|.|+.-+...++-+|-++   + +  .+...+.++....++|..++..+..+.-+.. +|.+.
T Consensus       148 s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~-~w~lg  226 (571)
T KOG1237|consen  148 SKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNV-GWKLG  226 (571)
T ss_pred             chHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcc-cceee
Confidence                2355666677778899989999999999888   2 2  2236677788889999999988888887776 99999


Q ss_pred             HHhhHHHHHHHHHHHhh
Q 016882          217 YGASTPLAVIMGMGMWW  233 (381)
Q Consensus       217 f~i~~~~~~~~~~~~~~  233 (381)
                      |.+..+..++.+++++.
T Consensus       227 f~i~~~~~~lai~iF~~  243 (571)
T KOG1237|consen  227 FGIPTVLNALAILIFLP  243 (571)
T ss_pred             ccHHHHHHHHHHHHHHc
Confidence            99999888776665554

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.03  E-value=0.062  Score=51.04  Aligned_cols=107  Identities=20%  Similarity=0.322  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---hhchHHHHHHHHHHHHHHHHHHHHh------------------chHHHHHHHHH
Q 016882           97 GLITSGSLYGALIGSILAFNIAD---ILGRRRELILAALLYLVGALVTALA------------------PDFIIMVVGRF  155 (381)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~g~l~d---~~Grk~~l~~~~~~~~~~~~~~~~~------------------~~~~~~~~~r~  155 (381)
                      +.......++..+++.+.+.+++   ++||++.+.++..+..++.++....                  +++....++.+
T Consensus       282 ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~  361 (461)
T KOG3098|consen  282 AIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGF  361 (461)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHH
Confidence            33334455556666666777764   5789999999988888877776552                  24567778889


Q ss_pred             HHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHH
Q 016882          156 VFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGS  204 (381)
Q Consensus       156 l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  204 (381)
                      +.|++-++.......++.... +++|..+.++.-.-..++..++.....
T Consensus       362 l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~  409 (461)
T KOG3098|consen  362 LLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSP  409 (461)
T ss_pred             HHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhh
Confidence            999999999999999999999 578888888877777777766555444

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.02  E-value=0.017  Score=54.67  Aligned_cols=118  Identities=15%  Similarity=0.143  Sum_probs=90.5

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHh------c----hHHHHHHHHHHHH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALA------P----DFIIMVVGRFVFG  158 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~------~----~~~~~~~~r~l~G  158 (381)
                      -|+++...|.+-++..+....+.+.+.++.+|+|..+.=+++......+..++..+      +    +...++.+-.+.-
T Consensus       288 ~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR  367 (432)
T PF06963_consen  288 QGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSR  367 (432)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHH
Confidence            49999999999999999999999999999999998888777776665554444321      1    2334444445555


Q ss_pred             HHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHh
Q 016882          159 IGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLL  206 (381)
Q Consensus       159 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  206 (381)
                      +|.=+.--...-++.|..|+++||...|.-....++--++...++-.+
T Consensus       368 ~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~  415 (432)
T PF06963_consen  368 IGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIF  415 (432)
T ss_pred             HHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            666666667788899999999999999998888887777776665544

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=96.85  E-value=0.064  Score=50.89  Aligned_cols=146  Identities=14%  Similarity=0.055  Sum_probs=79.1

Q ss_pred             HHHHHHhhhcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHH-----HhhchHHHHHH-
Q 016882           56 FPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIA-----DILGRRRELIL-  129 (381)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~-----d~~Grk~~l~~-  129 (381)
                      +..+.+++.|.-.+.....+|.+.++..     .+.+-+|.+.+.-+.. -+ -.-+++.++.     .|+||||..++ 
T Consensus         4 lL~~LY~lQGiP~GL~~gsiPflL~~~~-----~~~sy~q~~~fSla~~-Pf-SlKlLWaPiVDs~y~~~~GRRKSWiiP   76 (544)
T PF13000_consen    4 LLVLLYFLQGIPLGLAFGSIPFLLQSMA-----KKVSYSQQAIFSLASY-PF-SLKLLWAPIVDSVYSKRIGRRKSWIIP   76 (544)
T ss_pred             HHHHHHHHcCcccccccccchhhhcccc-----CCCChhHheeeeeeec-hh-HHHHhhhhhhhhhcccccCCcchhhhH
Confidence            3445567888888777666777666311     2666667666543311 00 1233444444     58999987654 


Q ss_pred             -----HHHHHHHHHHH----------HHHh-------ch--HHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHH
Q 016882          130 -----AALLYLVGALV----------TALA-------PD--FIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLI  185 (381)
Q Consensus       130 -----~~~~~~~~~~~----------~~~~-------~~--~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~  185 (381)
                           |..+..++.-+          -...       ++  ...+....++.-+-.+.--.++-.+.-.+..+++++.+.
T Consensus        77 ~Q~l~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~AS  156 (544)
T PF13000_consen   77 IQYLSGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYAS  156 (544)
T ss_pred             HHHHHHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHH
Confidence                 33222222222          0000       00  112222222222223333333344445567789999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhc
Q 016882          186 SLKEFFIVLGMVGGYGIGSLLVD  208 (381)
Q Consensus       186 ~~~~~~~~~g~~~~~~~~~~l~~  208 (381)
                      .....+.+.|..++..+.-.+.+
T Consensus       157 TcqtvG~~~Gyfls~tvFlalns  179 (544)
T PF13000_consen  157 TCQTVGQTAGYFLSFTVFLALNS  179 (544)
T ss_pred             HHHHhHhhhhHHHHHHHHHhhCC
Confidence            99888888888888777666653

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=96.56  E-value=0.0063  Score=56.64  Aligned_cols=147  Identities=17%  Similarity=0.065  Sum_probs=95.0

Q ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHhc----hHHHHHHHHHHHHHHHhhH
Q 016882           90 DLSSVEIGLITSGSLYGALIGSILAFNIADILGR-RRELILAALLYLVGALVTALAP----DFIIMVVGRFVFGIGIGLA  164 (381)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Gr-k~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~r~l~G~~~g~~  164 (381)
                      |.+....|++..+..++.++++.+.|.+.||... |.++++......++.+.....+    ..+.++..-.+.|++..+.
T Consensus       297 gY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~  376 (480)
T KOG2563|consen  297 GYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGY  376 (480)
T ss_pred             cCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCC
Confidence            5566788999999999999999999999999875 5555555555555532222221    2344555566778877778


Q ss_pred             hHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccc--hhHHHHH-hhHHHHHHHHHHHhhccc
Q 016882          165 MHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVA--GWRYMYG-ASTPLAVIMGMGMWWLPA  236 (381)
Q Consensus       165 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~--~w~~~f~-i~~~~~~~~~~~~~~~~~  236 (381)
                      .|+..-+-.|..-+..-+...|+.+....+-+.+-..+.+...+..+  +|..... ......++.+++..++++
T Consensus       377 ~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~  451 (480)
T KOG2563|consen  377 LPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRP  451 (480)
T ss_pred             CCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhh
Confidence            88888888887766666777788776666655666666666665442  3444333 333333444444555544

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=96.41  E-value=0.12  Score=49.35  Aligned_cols=111  Identities=14%  Similarity=0.070  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhchH--HHHH--HHHHHHHHHHHHHHH---------hchHHHHHHHHHHHHHHH
Q 016882           95 EIGLITSGSLYGALIGSILAFNIADILGRR--RELI--LAALLYLVGALVTAL---------APDFIIMVVGRFVFGIGI  161 (381)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk--~~l~--~~~~~~~~~~~~~~~---------~~~~~~~~~~r~l~G~~~  161 (381)
                      ..-....+++++-.+|..+..+.. .-++|  ..++  +.=+++.-..++|..         .++-+..++..++.|+.+
T Consensus       308 ~~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltn  386 (437)
T TIGR00939       308 YPIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSN  386 (437)
T ss_pred             HHHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhh
Confidence            334556678888888887554331 11222  2222  222233333334432         235566777899999999


Q ss_pred             hhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHh
Q 016882          162 GLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLL  206 (381)
Q Consensus       162 g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  206 (381)
                      |-....+..+..+..++++|..+..+...+..+|..+|..++-.+
T Consensus       387 Gy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~  431 (437)
T TIGR00939       387 GYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLF  431 (437)
T ss_pred             hHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998888775543

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=96.41  E-value=0.0076  Score=52.24  Aligned_cols=87  Identities=24%  Similarity=0.431  Sum_probs=65.1

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA  168 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~  168 (381)
                      ++....+++.+.....-..++...+.|-+.||-|||+.-+.-.+-++++++ .-.++.+-.++++|.+.|+.....+...
T Consensus        67 YgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqYkVLmVGR~LGGiaTsLLFSaF  145 (454)
T KOG4332|consen   67 YGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQYKVLMVGRVLGGIATSLLFSAF  145 (454)
T ss_pred             cCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCceEEEeehhhhhhHHHHHHHHHH
Confidence            678888888888887778888889999999999999975544444433322 2235688999999999999988877766


Q ss_pred             HH-HHHhhC
Q 016882          169 PM-YIAETA  176 (381)
Q Consensus       169 ~~-~~~~~~  176 (381)
                      -+ ++.|.-
T Consensus       146 EsWliaEHn  154 (454)
T KOG4332|consen  146 ESWLIAEHN  154 (454)
T ss_pred             HHHHHHHhh
Confidence            44 455544

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=95.91  E-value=0.55  Score=43.74  Aligned_cols=93  Identities=11%  Similarity=0.013  Sum_probs=51.0

Q ss_pred             hHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHH
Q 016882          146 DFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAV  225 (381)
Q Consensus       146 ~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~  225 (381)
                      .++..++.-.+.+++.|..+.......++ +|++.-...++=.+.++.+.+++.-.......+...+=...|.+..++.+
T Consensus       116 ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~ytqavm~G~a~aG~l~Sl~~i~tka~~~~~~~sA~~yF~~s~~~~l  194 (406)
T KOG1479|consen  116 FFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEYTQAVMSGQALAGTLTSLLRILTKAAFSDSRTSALIYFITSTVILL  194 (406)
T ss_pred             hHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHHHHHHHhcchhHhHHHHHHHHHHHHhcCCCCceeehhHHHHHHHHH
Confidence            35666667777888888777766665544 55454333333233333333333222222222332244456677777777


Q ss_pred             HHHHHHhhcccchh
Q 016882          226 IMGMGMWWLPASPR  239 (381)
Q Consensus       226 ~~~~~~~~~~~~~~  239 (381)
                      ++++++..+|+.|-
T Consensus       195 lC~i~y~~l~~lpf  208 (406)
T KOG1479|consen  195 LCFVLYLVLPKLPF  208 (406)
T ss_pred             HHHHHHHHhhcchH
Confidence            78887777777653

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=95.77  E-value=0.015  Score=54.37  Aligned_cols=125  Identities=18%  Similarity=0.175  Sum_probs=75.7

Q ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchH-------HHHHH----HHHHHHHHHHHHHH-hchHHHHHHHHHHH
Q 016882           90 DLSSVEIGLITSGSLYGALIGSILAFNIADILGRR-------RELIL----AALLYLVGALVTAL-APDFIIMVVGRFVF  157 (381)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk-------~~l~~----~~~~~~~~~~~~~~-~~~~~~~~~~r~l~  157 (381)
                      |.+..+..++..+...+..+|.+++|.++||+.|+       +.=.+    +..+.+...++... ..+...+.+..++.
T Consensus       279 ~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~  358 (493)
T KOG1330|consen  279 GFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLV  358 (493)
T ss_pred             CCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            44555667788888899999999999999995431       11111    11111111111111 12222233344445


Q ss_pred             HHHH-hhHhHHHHHHHHhhCCcccchhHHhHHHH-HHHHHHHHHHHHHHHhhcccchhH
Q 016882          158 GIGI-GLAMHAAPMYIAETAPTPMRGQLISLKEF-FIVLGMVGGYGIGSLLVDLVAGWR  214 (381)
Q Consensus       158 G~~~-g~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~~~~~l~~~~~~w~  214 (381)
                      |... -..++...-+..|..|+++|..+.++-.. ...+|-.-+|.+.|.+.+...+|+
T Consensus       359 g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~g~~  417 (493)
T KOG1330|consen  359 GETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKLRGYK  417 (493)
T ss_pred             HHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHhhCCC
Confidence            5432 33455556667889999999999999654 455566667768888887655666

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=95.72  E-value=0.0027  Score=62.09  Aligned_cols=151  Identities=16%  Similarity=0.246  Sum_probs=0.0

Q ss_pred             HHHHHHHHhhhcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHH-HHHHHHHHHHHHHHhhc--hHHHHHHH
Q 016882           54 FLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLY-GALIGSILAFNIADILG--RRRELILA  130 (381)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~G--rk~~l~~~  130 (381)
                      ++...++.....+.........|.+.+.+      |++++++++++..+..+ +.++|.+++|++..|+.  .|..+.+.
T Consensus       307 f~~~~la~~~~~~~~~G~~tF~pKylE~Q------F~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~  380 (539)
T PF03137_consen  307 FMCLILAGVFESFIVSGFATFLPKYLESQ------FGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFC  380 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHH
Confidence            34555566666777777778888887764      89999999998877555 67899999999999874  45444444


Q ss_pred             HHHHHHHHHHHH---H--hc-------------------------------------------------hHHHHHHHHHH
Q 016882          131 ALLYLVGALVTA---L--AP-------------------------------------------------DFIIMVVGRFV  156 (381)
Q Consensus       131 ~~~~~~~~~~~~---~--~~-------------------------------------------------~~~~~~~~r~l  156 (381)
                      .+...++.+...   +  ++                                                 .+..+++..++
T Consensus       381 ~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~  460 (539)
T PF03137_consen  381 IVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFI  460 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHH
Confidence            433333332210   0  00                                                 11233344444


Q ss_pred             HHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHH-HHHHHHHHHHHHHHHhhccc
Q 016882          157 FGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEF-FIVLGMVGGYGIGSLLVDLV  210 (381)
Q Consensus       157 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~~~~~l~~~~  210 (381)
                      .-+..+.........+-+..|+++|+.++|+... .-.+|.+-||.+.|.+.+..
T Consensus       461 ~~~~~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~t  515 (539)
T PF03137_consen  461 LSFFTFMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDST  515 (539)
T ss_dssp             -------------------------------------------------------
T ss_pred             HHHHHHhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence            4444444555555666788889999999999764 44557788888888888753

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=95.68  E-value=0.012  Score=55.99  Aligned_cols=77  Identities=21%  Similarity=0.227  Sum_probs=60.8

Q ss_pred             HhhhcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHH-HHHHHHHHHH
Q 016882           61 GLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELIL-AALLYLVGAL  139 (381)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~-~~~~~~~~~~  139 (381)
                      ++..+...+.+-+.++.+.++       +|+++.+.|.+...--+..+++.|++|.++||+-+||.+++ +.+......+
T Consensus        20 ~~~~~~~~g~l~pll~vy~kQ-------LGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~f   92 (618)
T KOG3762|consen   20 YLFFGARFGSLFPLLAVYFKQ-------LGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATF   92 (618)
T ss_pred             eeeeeecccccchHHHHHHHH-------cCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence            355556667777777777777       89999999999999999999999999999999987666555 4555556666


Q ss_pred             HHHHh
Q 016882          140 VTALA  144 (381)
Q Consensus       140 ~~~~~  144 (381)
                      +..+.
T Consensus        93 ll~fv   97 (618)
T KOG3762|consen   93 LLVFV   97 (618)
T ss_pred             heeec
Confidence            65553

>TIGR00805 oat sodium-independent organic anion transporter

Probab=95.29  E-value=0.05  Score=54.61  Aligned_cols=65  Identities=15%  Similarity=0.096  Sum_probs=47.3

Q ss_pred             ccccccccccCCCCCCCccccCChhHHHHHHHHHHH-HHHHHHHHHHHHHHhhc--hHHHHHHHHHHHHHHHHH
Q 016882           70 STSCATISIESPTLSGISWYDLSSVEIGLITSGSLY-GALIGSILAFNIADILG--RRRELILAALLYLVGALV  140 (381)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~G--rk~~l~~~~~~~~~~~~~  140 (381)
                      .....+|.+.+++      +|+++.+.+++.+...+ +.+++.+++|++.||++  .|+.+.+++++..++.++
T Consensus       348 ~~~~~lP~yl~~~------~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~  415 (633)
T TIGR00805       348 GYITFLPKYLENQ------YGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLL  415 (633)
T ss_pred             HHHHHHHHHHHHH------cCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence            3334556555432      79999999999988776 67899999999999998  466666666666555433

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=95.00  E-value=0.2  Score=46.84  Aligned_cols=98  Identities=19%  Similarity=0.187  Sum_probs=75.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH--HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHHHH
Q 016882           93 SVEIGLITSGSLYGALIGSILAFNIADILGRRRELILA--ALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPM  170 (381)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~  170 (381)
                      ...-|.+-++..+..+++++..|++..++.+..-+.++  .++.+...++++..+|.|..+++.++.+.......+....
T Consensus       284 ~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~~  363 (412)
T PF01770_consen  284 SVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIASF  363 (412)
T ss_pred             cccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34457788888888999999999997777775444443  4444556667778899999999999999888888888888


Q ss_pred             HHHhhCCcccchhHHhHHHH
Q 016882          171 YIAETAPTPMRGQLISLKEF  190 (381)
Q Consensus       171 ~~~~~~~~~~r~~~~~~~~~  190 (381)
                      -++.....+.-+...|+...
T Consensus       364 qIA~~l~~e~yaLVFGiNtf  383 (412)
T PF01770_consen  364 QIAKNLSEERYALVFGINTF  383 (412)
T ss_pred             HHHHhccccceeeeeeeHHH
Confidence            78887777777777776544

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=94.87  E-value=0.046  Score=52.14  Aligned_cols=79  Identities=15%  Similarity=0.152  Sum_probs=60.7

Q ss_pred             HHHHHH-HHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHH
Q 016882          149 IMVVGR-FVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIM  227 (381)
Q Consensus       149 ~~~~~r-~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~  227 (381)
                      .+++++ ++.|++.-.......++-+|...+++++.+.++++....++.+++|.+........ |.|+...+.+...++.
T Consensus       389 ~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~-g~~~v~~~~~~~~l~~  467 (488)
T KOG2325|consen  389 LYLISFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLS-GPRPVWIILLCLLLVV  467 (488)
T ss_pred             hheeehhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhc-CccHHHHHHHHHHHHH
Confidence            344443 34566666666677888899999999999999999999999999999998888776 7777766666555543


Q ss_pred             H
Q 016882          228 G  228 (381)
Q Consensus       228 ~  228 (381)
                      .
T Consensus       468 ~  468 (488)
T KOG2325|consen  468 A  468 (488)
T ss_pred             H
Confidence            3

>TIGR00806 rfc RFC reduced folate carrier

Probab=94.13  E-value=0.13  Score=49.15  Aligned_cols=95  Identities=14%  Similarity=0.098  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhchH--HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHHHHHHHh
Q 016882           97 GLITSGSLYGALIGSILAFNIADILGRR--RELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAE  174 (381)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~g~l~d~~Grk--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~  174 (381)
                      |..-++..+..+++++..|++-.++.+-  ..+.+..++.+...++++..+|+|..+++.++.+.......++...-++.
T Consensus       301 G~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~~~y~flitia~~~iA~  380 (511)
T TIGR00806       301 GAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFRGIYQFLVPIATFQIAS  380 (511)
T ss_pred             CHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555667777788899999997777553  33344455555566677788999999999999999999999999999999


Q ss_pred             hCCcccchhHHhHHHHH
Q 016882          175 TAPTPMRGQLISLKEFF  191 (381)
Q Consensus       175 ~~~~~~r~~~~~~~~~~  191 (381)
                      ....+..|...|+..+.
T Consensus       381 ~L~~~~~aLvFGiNtfv  397 (511)
T TIGR00806       381 SLSKELCALVFGINTFV  397 (511)
T ss_pred             HhcccceEEEEecHHHH
Confidence            98888888888886653

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=94.02  E-value=0.019  Score=52.21  Aligned_cols=107  Identities=22%  Similarity=0.200  Sum_probs=3.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh-hchHHHHHH--HHHHHHHHHHHHH----------HhchHHHHHHHHHHHHHHHhhHh
Q 016882           99 ITSGSLYGALIGSILAFNIADI-LGRRRELIL--AALLYLVGALVTA----------LAPDFIIMVVGRFVFGIGIGLAM  165 (381)
Q Consensus        99 ~~~~~~~~~~~~~~~~g~l~d~-~Grk~~l~~--~~~~~~~~~~~~~----------~~~~~~~~~~~r~l~G~~~g~~~  165 (381)
                      ....++++-.+|..+.++..=+ ..+|.....  .=+++.-..++|-          ..++-+..++..++.|+.+|-..
T Consensus       187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl~  266 (309)
T PF01733_consen  187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYLS  266 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchhh
Confidence            4567888889998877764211 124443332  1222222222221          22344667778889999999999


Q ss_pred             HHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHH
Q 016882          166 HAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSL  205 (381)
Q Consensus       166 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~  205 (381)
                      .....+..+..++++|..+..+...+..+|..+|..++-.
T Consensus       267 tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~~  306 (309)
T PF01733_consen  267 TLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSFL  306 (309)
T ss_dssp             HHHH------------------------------------
T ss_pred             hceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999888888888888888776543

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=93.91  E-value=1.1  Score=41.91  Aligned_cols=113  Identities=18%  Similarity=0.080  Sum_probs=75.9

Q ss_pred             ChhHHHHHHHH-HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH-------HhchHHHHHHHHHHHHHHHhh
Q 016882           92 SSVEIGLITSG-SLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTA-------LAPDFIIMVVGRFVFGIGIGL  163 (381)
Q Consensus        92 ~~~~~~~~~~~-~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~-------~~~~~~~~~~~r~l~G~~~g~  163 (381)
                      +......+..+ +++...+|.+...++.++=.|+..+....=+..+-.+...       ...+-+.+++...+.|+..|=
T Consensus       280 ~~~y~~~~~~l~fN~~d~vG~~~a~~~~~~~~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGY  359 (406)
T KOG1479|consen  280 GDWYALLLVFLSFNVFDLIGSILAALLTWPDPRKLTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGY  359 (406)
T ss_pred             chhhHHHHHHHHhHHHHHhhhhhhhcccCCCCceehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccch
Confidence            34445555666 8889999977777766554343333333323333333221       134557788889999999998


Q ss_pred             HhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHH
Q 016882          164 AMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGS  204 (381)
Q Consensus       164 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  204 (381)
                      ..+....+..+-.|++++-.+-.+.......|...|..++.
T Consensus       360 ltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s~  400 (406)
T KOG1479|consen  360 LTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLSW  400 (406)
T ss_pred             HhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            88888888888888888888877778887888777776643

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=92.51  E-value=0.21  Score=46.88  Aligned_cols=130  Identities=16%  Similarity=-0.027  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhC
Q 016882           97 GLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETA  176 (381)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~  176 (381)
                      .|=..++.+...+.+...-++++|+|-|+.+..+...+.++..+....++.+.....+...|+-.+.....-...++++.
T Consensus       335 ~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~  414 (498)
T KOG0637|consen  335 CLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALALYA  414 (498)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHHHH
Confidence            34456777888889999999999999777777777767777777777888777777787777544444333333333322


Q ss_pred             C-----------------------cccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHH
Q 016882          177 P-----------------------TPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVI  226 (381)
Q Consensus       177 ~-----------------------~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~  226 (381)
                      -                       ..-+|...|+.+....+..++.....+.+.+..++-+.+-...+++++.
T Consensus       415 ~~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G~~~~~~~~~~a~s~~  487 (498)
T KOG0637|consen  415 ILGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFGGGNLPAFVSGAVALL  487 (498)
T ss_pred             HhCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhcCCcchhHHHHHHHHHH
Confidence            1                       1223555666777777788887777788887776667666666655554

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=90.33  E-value=1.1  Score=40.51  Aligned_cols=72  Identities=18%  Similarity=0.335  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhC
Q 016882          104 LYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETA  176 (381)
Q Consensus       104 ~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~  176 (381)
                      ....+.++++.+.+..++|.|.++.+++......- ..-+-+.+..++-.-.+.|++.+..++.--+|+++.-
T Consensus        68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyi-A~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g  139 (390)
T KOG3097|consen   68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYI-AANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMG  139 (390)
T ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HhhcchhHHhhccHHHhhccccccccccCcceecHHH
Confidence            34445566666688999999999998877665421 1222345677788888999999888777666666554

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=90.28  E-value=11  Score=34.65  Aligned_cols=86  Identities=21%  Similarity=0.259  Sum_probs=57.4

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH----HH-HH----hchHHHHHHHHHHHHH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGAL----VT-AL----APDFIIMVVGRFVFGI  159 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~----~~-~~----~~~~~~~~~~r~l~G~  159 (381)
                      +|-.--|.+.+.+.+.....+|+...-++.|.--.-+.+..=.++..++.+    ++ .|    .++.+.++++-++.|.
T Consensus        38 lG~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~Vly~lt~vIG~  117 (508)
T COG4262          38 LGGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRLVLYALTAVIGV  117 (508)
T ss_pred             cCCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence            355667889999999999999998888777653333222222222222211    11 22    2456788889999999


Q ss_pred             HHhhHhHHHHHHHHh
Q 016882          160 GIGLAMHAAPMYIAE  174 (381)
Q Consensus       160 ~~g~~~~~~~~~~~~  174 (381)
                      -.|...|....++..
T Consensus       118 LVG~EiPL~mrml~~  132 (508)
T COG4262         118 LVGAEIPLLMRMLQR  132 (508)
T ss_pred             HHhcchHHHHHHHHH
Confidence            999999998888766

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=90.10  E-value=4.7  Score=35.21  Aligned_cols=15  Identities=7%  Similarity=-0.024  Sum_probs=8.8

Q ss_pred             hHHHhcHHHHHHHcC
Q 016882          325 PSVLYYAASILQSAG  339 (381)
Q Consensus       325 ~~~~~~~~~~~~~~g  339 (381)
                      +..++....+.++.+
T Consensus       195 yGs~fvPv~Yi~~~~  209 (254)
T PF07857_consen  195 YGSNFVPVIYIQDHP  209 (254)
T ss_pred             HhcccchHHHHHhCc
Confidence            455566666666653

The region concerned is approximately 280 residues long.

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=88.93  E-value=0.62  Score=41.58  Aligned_cols=113  Identities=13%  Similarity=-0.012  Sum_probs=77.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHh-hchHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHHHHHH
Q 016882           94 VEIGLITSGSLYGALIGSILAFNIADI-LGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYI  172 (381)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~g~l~d~-~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~  172 (381)
                      .|.-|....+.+|-.++.-......-+ .-.-..+-.-.+++.+.-.+..+.+++|..++.-+.-|+-.|..++...--+
T Consensus       288 sqYRwyqvlYQlGVFiSRSS~~~~~~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i  367 (409)
T KOG3880|consen  288 SQYRWYQVLYQLGVFISRSSINLFTMPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNI  367 (409)
T ss_pred             hcchhhheeeeeeEEEEeccceEEechHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHH
Confidence            457788888777655443221111101 0001112223344445555667788999888888899998888888887778


Q ss_pred             HhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHh
Q 016882          173 AETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLL  206 (381)
Q Consensus       173 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  206 (381)
                      .+-.++++|-.+++....+-.+|..++..++-.+
T Consensus       368 ~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl  401 (409)
T KOG3880|consen  368 HKETEPDVREFAMSAVSISDSIGIFLAGLLALPL  401 (409)
T ss_pred             hhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence            8878889999999999999999998888877655

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=88.06  E-value=18  Score=32.00  Aligned_cols=133  Identities=14%  Similarity=0.157  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhchH--HHHHHHHHHHHHHHHHHHHh----c---hHHHHHHHHHHHHHHHhhHhH
Q 016882           96 IGLITSGSLYGALIGSILAFNIADILGRR--RELILAALLYLVGALVTALA----P---DFIIMVVGRFVFGIGIGLAMH  166 (381)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~g~l~d~~Grk--~~l~~~~~~~~~~~~~~~~~----~---~~~~~~~~r~l~G~~~g~~~~  166 (381)
                      -|.+.+.++++.++|+-+..++..|-..|  ..+.+..++.+....+....    +   +...-+++..+.-.+.|..+|
T Consensus       284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwP  363 (454)
T KOG4332|consen  284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWP  363 (454)
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcch
Confidence            47788889999999999888887765443  33444444444333333222    1   233335666677788899999


Q ss_pred             HHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHH
Q 016882          167 AAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGM  229 (381)
Q Consensus       167 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~  229 (381)
                      ...-+=.++.|.+.|+..+.++-.-..+-..++-..-..-.... +-|..|-++.+...+..+
T Consensus       364 SimkmRsqyIPEearstimNfFRvPLnifvClvLynlh~~~~p~-~tr~mf~icS~~~~~a~i  425 (454)
T KOG4332|consen  364 SIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNLHVDAFPT-TTRNMFGICSAFLFVASI  425 (454)
T ss_pred             HHHHHHHhhCCHHHHhhhhhheechhhHhhhhhheecccccCcc-ccchhhhhhHHHHHHHHH
Confidence            99999999999999999988865433332222211100000112 567888888777666543

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=87.79  E-value=15  Score=32.13  Aligned_cols=92  Identities=13%  Similarity=0.096  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-hchHHHHH----HHHHHHHHHHHHHHH-h----chHHHHHHHHHHHHHHHhhHh
Q 016882           96 IGLITSGSLYGALIGSILAFNIADI-LGRRRELI----LAALLYLVGALVTAL-A----PDFIIMVVGRFVFGIGIGLAM  165 (381)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~g~l~d~-~Grk~~l~----~~~~~~~~~~~~~~~-~----~~~~~~~~~r~l~G~~~g~~~  165 (381)
                      .....-++..|..+|.+..|.+... +.||+.+.    .+++++.+..+.... .    .+...+++.-++.|++.=+.+
T Consensus       143 ~~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ  222 (267)
T PF07672_consen  143 IPIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQ  222 (267)
T ss_pred             hHHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhh
Confidence            3455556667777777888887753 45665544    334444444444212 1    136678888888888876666


Q ss_pred             HHHHHHHHhhC--CcccchhHHhH
Q 016882          166 HAAPMYIAETA--PTPMRGQLISL  187 (381)
Q Consensus       166 ~~~~~~~~~~~--~~~~r~~~~~~  187 (381)
                      +.....--|.-  .+++-|...|+
T Consensus       223 ~ViL~lPhEyK~~~pk~ig~~Fg~  246 (267)
T PF07672_consen  223 GVILNLPHEYKGYNPKKIGIQFGL  246 (267)
T ss_pred             HHHhcChhhhcCCCcceehhHHHH
Confidence            66554444432  33444444444

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=82.82  E-value=48  Score=32.11  Aligned_cols=71  Identities=11%  Similarity=0.097  Sum_probs=54.4

Q ss_pred             HHHHHHHhhHhHHHHHHHHhhCC-cccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHH
Q 016882          155 FVFGIGIGLAMHAAPMYIAETAP-TPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVI  226 (381)
Q Consensus       155 ~l~G~~~g~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~  226 (381)
                      ++.|+.........-..+.+.+| +++|+..+|-++...++.+++..++++.+.+.. ||.....+.-++.++
T Consensus       274 i~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~-Gw~~~a~i~Pii~li  345 (472)
T TIGR00769       274 IAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKY-GWLTAALITPLVMLL  345 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence            44666667777777778888876 457788888888888888877777778888887 999888777666555

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF12832 MFS_1_like: MFS_1 like family

Probab=82.71  E-value=8.4  Score=26.71  Aligned_cols=48  Identities=13%  Similarity=0.113  Sum_probs=40.0

Q ss_pred             HhhchhHHHhcHHHHHHHcCCCCCchhHHHHHHHHHHHHHHhHHHHHHH
Q 016882          320 QITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKVGSCTLFFMSN  368 (381)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  368 (381)
                      .+.+...+.-|.|.++++.|+ +..+...+..+..+..+++.+++....
T Consensus        12 ~f~~~g~~~Pfl~~~~~~~Gl-~~~~iGil~~i~~~~~~~~~pl~g~la   59 (77)
T PF12832_consen   12 YFAALGCLYPFLPLYLKQLGL-SPSQIGILSAIRPLIRFLAPPLWGFLA   59 (77)
T ss_pred             HHHHHHHHHhhhhHhhhhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444556777888999999999 889999999999999999999877663

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=81.79  E-value=0.44  Score=43.23  Aligned_cols=79  Identities=11%  Similarity=-0.064  Sum_probs=0.0

Q ss_pred             HHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHH---Hhhccc-chhHHHHHhhHHHHHHHHHHH
Q 016882          156 VFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGS---LLVDLV-AGWRYMYGASTPLAVIMGMGM  231 (381)
Q Consensus       156 l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~---~l~~~~-~~w~~~f~i~~~~~~~~~~~~  231 (381)
                      +.|++.+..+.....+.+. +|++.    +.....+.++++++...+.-   ...+.. .+-...|.+..++.+++++.+
T Consensus         6 ~~~~~~~~~q~s~~glas~-~p~~y----~~a~~~Gq~~aGv~~s~l~ii~~~~~~~~~~~a~~yF~~a~~i~i~~~~~~   80 (309)
T PF01733_consen    6 LIGFANAVLQSSLFGLASL-FPPKY----TQAVMIGQGLAGVIVSLLRIITKASGSDVKTSAFIYFIIAVLIVILCIILY   80 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEHhhhHHHhccHHHHHhc-CCHHH----HHHHHhhccHHHHHHHHHHHHHHHhhhccchhhhhHHHHHHHHHHHHHHHH
Confidence            4566666666666666554 55444    23333344444444333222   111111 122234444555555566666


Q ss_pred             hhcccchh
Q 016882          232 WWLPASPR  239 (381)
Q Consensus       232 ~~~~~~~~  239 (381)
                      +.++..|.
T Consensus        81 ~~l~~~~~   88 (309)
T PF01733_consen   81 FILPRSPF   88 (309)
T ss_dssp             --------
T ss_pred             HHhccChH
Confidence            66666553

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=81.28  E-value=56  Score=31.84  Aligned_cols=71  Identities=14%  Similarity=0.141  Sum_probs=51.8

Q ss_pred             HHHHHHHhhHhHHHHHHHHhhCCc-ccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHH
Q 016882          155 FVFGIGIGLAMHAAPMYIAETAPT-PMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVI  226 (381)
Q Consensus       155 ~l~G~~~g~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~  226 (381)
                      ...|+.........-..+.+.+|. +.+...+|-++...++-+.+...+++.+.+.. ||+..-.+.-++.++
T Consensus       290 i~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii~~~l~~~iir~~-GW~~~AlitPiv~li  361 (491)
T PF03219_consen  290 IAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMMFLSSNIIRRF-GWRTAALITPIVILI  361 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHhHHHHHH
Confidence            445666677777777778888864 45567777777777777777778888888887 999887776555544

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length

Probab=80.78  E-value=33  Score=28.93  Aligned_cols=40  Identities=25%  Similarity=0.150  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHHHHHHHH---HhhchHHHHHHHHHHHHHHHH
Q 016882          100 TSGSLYGALIGSILAFNIA---DILGRRRELILAALLYLVGAL  139 (381)
Q Consensus       100 ~~~~~~~~~~~~~~~g~l~---d~~Grk~~l~~~~~~~~~~~~  139 (381)
                      .....+++.+|..+++.+.   ++..+|+.....+.+..+..+
T Consensus        52 ~~~~i~~F~~G~~~~~~i~~~~~~~~~~~~~~~~l~~~~~ll~   94 (209)
T PF06912_consen   52 YLLAILSFILGAFLAGLIVRRSRRRRRRRWYRILLLLEAILLL   94 (209)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHH
Confidence            3445556666777777662   233344444444444443333

The function of this family is unknown although a few members are thought to be membrane proteins.

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=80.59  E-value=9.1  Score=34.50  Aligned_cols=137  Identities=14%  Similarity=0.058  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhC
Q 016882           97 GLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETA  176 (381)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~  176 (381)
                      |.+.-+-.+-..+..+.+..+.||+.--.=+.+..++.+.+.++.+++++.++-+.+-.+..++.|........+.+. +
T Consensus        65 g~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss~-Y  143 (409)
T KOG3880|consen   65 GAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSSR-Y  143 (409)
T ss_pred             chhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhcc-C
Confidence            334444445555666666777777643333344556667777778888999998888889999888887776665443 3


Q ss_pred             CcccchhHHhHHHHHHHHHHHHHHHHHHHhhcc-cchhHHHHHhhHHHHHHHHHHHhhcccch
Q 016882          177 PTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDL-VAGWRYMYGASTPLAVIMGMGMWWLPASP  238 (381)
Q Consensus       177 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~~w~~~f~i~~~~~~~~~~~~~~~~~~~  238 (381)
                      ++.    ..+-+..+.+.++++|..--..+.+. .-+-|...++...+.++.+..++++-++|
T Consensus       144 ~~~----~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~p  202 (409)
T KOG3880|consen  144 PSI----VIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKSP  202 (409)
T ss_pred             CCc----eeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCCC
Confidence            322    23334444444445554444444331 12567777777777766666666643333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	381
4gby_A	491	The Structure Of The Mfs (Major Facilitator Superfa		5e-15

>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491

Iteration: 1
 Score = 78.6 bits (192), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 103/213 (48%), Gaps = 27/213 (12%)
Query: 163 LAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVD-------LVAGWRY 215
           LA   +PMYIAE AP  +RG+L+S  +F I+ G +  Y +   +            GWRY
Sbjct: 142 LASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRY 201
Query: 216 MYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSA 275
           M+ +    A++  M ++ +P SPRWL+      +G     +E A   L ++ G ++   A
Sbjct: 202 MFASECIPALLFLMLLYTVPESPRWLM-----SRGK----QEQAEGILRKIMGNTLATQA 252
Query: 276 PTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASIL 335
             E+   L         ++   R +  G  +  ++IG  L +FQQ  G   VLYYA  + 
Sbjct: 253 VQEIKHSLD------HGRKTGGRLLMFG--VGVIVIGVMLSIFQQFVGINVVLYYAPEVF 304
Query: 336 QSAGFSAASD-ATRVSILLGLFKVGSCTLFFMS 367
           ++ G  A++D A   +I++G+  +    L  M+
Sbjct: 305 KTLG--ASTDIALLQTIIVGVINLTFTVLAIMT 335

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	381
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	3e-06
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	4e-06
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	8e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 2e-06
 Identities = 34/200 (17%), Positives = 64/200 (32%), Gaps = 47/200 (23%)

Query: 180 MRGQLISLK-EFFIVL-GMVGGYGIG-SLLVDLVAGWRYMYGASTPLAVIMGMGMWWL-- 234
           +R  L+ L+    +++ G++G    G + +   V         S  +   M   ++WL  
Sbjct: 140 LRQALLELRPAKNVLIDGVLG---SGKTWVALDVC-------LSYKVQCKMDFKIFWLNL 189

Query: 235 --PASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGED 292
               SP  +L   M     +Q L                  +    +  I  EL  + + 
Sbjct: 190 KNCNSPETVL--EM-----LQKLLYQIDPNWTSR--SDHSSNIKLRIHSIQAELRRLLKS 240

Query: 293 KE-----VSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDAT 347
           K      + L  V + K   A  +   ++L    T    V            F +A+  T
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKILL---TTRFKQV----------TDFLSAATTT 287

Query: 348 RVSI---LLGLFKVGSCTLF 364
            +S+    + L      +L 
Sbjct: 288 HISLDHHSMTLTPDEVKSLL 307

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438

 Score = 47.6 bits (113), Expect = 3e-06
 Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 3/122 (2%)

Query: 89  YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALV---TALAP 145
           + L++ + GLI S   +G  I  I A  +   L  +  +I    LY +GA +    A   
Sbjct: 56  FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIM 115

Query: 146 DFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSL 205
           ++ + +VG F+   G+G    AA  ++    P       ++L + F   G +     G  
Sbjct: 116 NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS 175

Query: 206 LV 207
           L+
Sbjct: 176 LI 177

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375

 Score = 47.2 bits (113), Expect = 4e-06
 Identities = 24/124 (19%), Positives = 42/124 (33%), Gaps = 13/124 (10%)

Query: 117 IADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETA 176
           I+D +GRR  +++   ++++  LV        +++    + G+G G+    A     +  
Sbjct: 58  ISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLY 117

Query: 177 PTPMRGQLISLKEFFIVLGMVGGYG------IGSLLVDLVAGWRYMYGASTPLAVIMGMG 230
                    SL      L M           IG LL   +  WR  Y     L   +   
Sbjct: 118 ERTQLRHANSL------LNMGILVSPLLAPLIGGLLD-TMWNWRACYLFLLVLCAGVTFS 170

Query: 231 MWWL 234
           M   
Sbjct: 171 MARW 174

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 43.5 bits (103), Expect = 8e-05
 Identities = 33/215 (15%), Positives = 65/215 (30%), Gaps = 16/215 (7%)

Query: 39  RPSPENYSVSAAILPFLFP-----ALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSS 93
           +P+P    + AA +   +         G+ +GY          ++  P L        S 
Sbjct: 5   KPAPHKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV---EQGFSR 61

Query: 94  VEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPD----FII 149
            ++G   SG          +  +++D    R  L    +L     L     P       +
Sbjct: 62  GDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAV 121

Query: 150 MVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDL 209
           M V  F+ G   G+        +        RG ++S+      +G      +  L +  
Sbjct: 122 MFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW 181

Query: 210 VAGWRYMYGASTPLAVIMGMGMWWL----PASPRW 240
              W          A+++ +  + +    P S   
Sbjct: 182 FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGL 216

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	381
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.97
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.94
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.94
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.91
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.86
2xut_A	524	Proton/peptide symporter family protein; transport	99.74
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.59
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.59
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.47
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.43
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.33
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.31
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.01
2xut_A	524	Proton/peptide symporter family protein; transport	98.69

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.97  E-value=7.5e-30  Score=245.51  Aligned_cols=305  Identities=31%  Similarity=0.509  Sum_probs=236.4

Q ss_pred             chhHHHHHHHHHHHHHHhhhcccccccccccccccCCCCCC-CccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 016882           45 YSVSAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSG-ISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGR  123 (381)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Gr  123 (381)
                      ++.+..+.+.++++++.++++||.+.++.+++.+.++...+ ....+.+..+.+++.+.+.+|..+|++++|+++||+||
T Consensus         5 ~~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GR   84 (491)
T 4gc0_A            5 YNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGR   84 (491)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCH
T ss_pred             cChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            34455666667788999999999999998888776541110 00113456778999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH------------------HhchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHH
Q 016882          124 RRELILAALLYLVGALVTA------------------LAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLI  185 (381)
Q Consensus       124 k~~l~~~~~~~~~~~~~~~------------------~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~  185 (381)
                      |++++++.+++.++.++++                  +++|++.++++|++.|++.|+..+..+++++|+.|+++|++..
T Consensus        85 k~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~  164 (491)
T 4gc0_A           85 RDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLV  164 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhH
Confidence            9999999999999999998                  4789999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhcc-------cchhHHHHHhhHHHHHHHHHHHhhcccchhHHHHhhccccCcchhhHHH
Q 016882          186 SLKEFFIVLGMVGGYGIGSLLVDL-------VAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRES  258 (381)
Q Consensus       186 ~~~~~~~~~g~~~~~~~~~~l~~~-------~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (381)
                      ++.+.+..+|.++++.++..+...       ...||+.+.+..++.++.++..++.||+|+|+..++         +.+|
T Consensus       165 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~---------~~~~  235 (491)
T 4gc0_A          165 SFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRG---------KQEQ  235 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTT---------CHHH
T ss_pred             HhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcC---------chhH
Confidence            999999999999999988877642       237999999999998888888899999999999877         6677


Q ss_pred             HHHHHHHHhCCCCCCCChhhHHHHHHhhhhccccccccchhhccccchHHHHHHHHHHHHHHhhchhHHHhcHHHHHHHc
Q 016882          259 AISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSA  338 (381)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (381)
                      +++.+++.++++..+++   ..+..+...  .+++.......+   ..++..+.....++.++.+++.+.+|.+++.+..
T Consensus       236 a~~~l~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (491)
T 4gc0_A          236 AEGILRKIMGNTLATQA---VQEIKHSLD--HGRKTGGRLLMF---GVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTL  307 (491)
T ss_dssp             HHHHHHHHHHHHHHHHH---HHHHHHHHH--HHHHHTTHHHHS---CCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHHhHHHhcCCchhHHH---HHHHHHHHH--hhhhhhhHHHHh---cccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhc
Confidence            77777776543222111   111111100  011111111222   2346667777778888999999999999999998


Q ss_pred             CCCCCchhHHHHHHHHHHHHHHhHHHHHH
Q 016882          339 GFSAASDATRVSILLGLFKVGSCTLFFMS  367 (381)
Q Consensus       339 g~~~~~~~~~~~~~~~~~~~i~~~~~~~~  367 (381)
                      +. +.........+.++..+++++++.+.
T Consensus       308 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~l  335 (491)
T 4gc0_A          308 GA-STDIALLQTIIVGVINLTFTVLAIMT  335 (491)
T ss_dssp             SC-CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CC-CccchhhHHHHHHHHHHHHHHHHHHH
Confidence            87 66667777788888888888876544

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.94  E-value=1.8e-25  Score=211.68  Aligned_cols=258  Identities=16%  Similarity=0.136  Sum_probs=202.7

Q ss_pred             HHHHHHHhhhcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 016882           55 LFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLY  134 (381)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~  134 (381)
                      ..+++..+..+++.....+..|.+.++       +|++..+.+++.+++.++..++++++|+++||+|||+++.++.++.
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~  101 (438)
T 3o7q_A           29 ALLCSLFFLWAVANNLNDILLPQFQQA-------FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY  101 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH-------SCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHH
Confidence            444555667777777888888888887       8999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH---HHhchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhh-ccc
Q 016882          135 LVGALVT---ALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLV-DLV  210 (381)
Q Consensus       135 ~~~~~~~---~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~-~~~  210 (381)
                      +++.+++   +++++++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+. +..
T Consensus       102 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~  181 (438)
T 3o7q_A          102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV  181 (438)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSS
T ss_pred             HHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            9999999   888999999999999999999999999999999999999999999999999999999999999998 554


Q ss_pred             ch------------------------hHHHHHhhHHHHHHHHHHHhhc--ccchhHHHHhhccccCcchhhHHHHHHHHH
Q 016882          211 AG------------------------WRYMYGASTPLAVIMGMGMWWL--PASPRWLLLCAMKRKGDMQDLRESAISCLC  264 (381)
Q Consensus       211 ~~------------------------w~~~f~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (381)
                      +.                        ||+.|++.+++.++..+..++.  ||+++.        +               
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--------~---------------  238 (438)
T 3o7q_A          182 PHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD--------N---------------  238 (438)
T ss_dssp             CCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT--------C---------------
T ss_pred             ccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc--------c---------------
Confidence            33                        9999988887777655554443  443220        0               


Q ss_pred             HHhCCCCCCCChhhHHHHHHhhhhccccccccchhhccccchHHHHHHHHHHHHHHhhchhHHHhcHHHH-HHHc-CCCC
Q 016882          265 RLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASI-LQSA-GFSA  342 (381)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-g~~~  342 (381)
                           +.+               +++++.+.+++++++++..+...+...+...    ....+..|.|.+ +++. |+ +
T Consensus       239 -----~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~-~  293 (438)
T 3o7q_A          239 -----HSD---------------AKQGSFSASLSRLARIRHWRWAVLAQFCYVG----AQTACWSYLIRYAVEEIPGM-T  293 (438)
T ss_dssp             -----CCC---------------SSTTSHHHHHHHHTTCSHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHSTTC-C
T ss_pred             -----ccc---------------ccccchhhhHHHHHhChHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhccCCc-c
Confidence                 000               0011223445677777765555444333333    235566777777 7776 88 7


Q ss_pred             CchhHHHHHHHHHHHHHHhHHHHHH
Q 016882          343 ASDATRVSILLGLFKVGSCTLFFMS  367 (381)
Q Consensus       343 ~~~~~~~~~~~~~~~~i~~~~~~~~  367 (381)
                      ...+.....+..+..+++.+++...
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~g~l  318 (438)
T 3o7q_A          294 AGFAANYLTGTMVCFFIGRFTGTWL  318 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7778888888888888888775533

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.94  E-value=6.7e-26  Score=215.30  Aligned_cols=277  Identities=14%  Similarity=0.053  Sum_probs=207.9

Q ss_pred             HHHHHHHHHHHHhhhcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Q 016882           50 AILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELIL  129 (381)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~  129 (381)
                      .+..+...+++.+..+++.....+..|.+.++       + .+..+.+++.+++.++..++++++|+++||+|||+++.+
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~   97 (451)
T 1pw4_A           26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-------G-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPA   97 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSS-------T-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------h-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHH
Confidence            34455666777788888888888999999887       8 899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH----hchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHH
Q 016882          130 AALLYLVGALVTAL----APDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSL  205 (381)
Q Consensus       130 ~~~~~~~~~~~~~~----~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~  205 (381)
                      +.++.+++.+++++    +++++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.+++.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  177 (451)
T 1pw4_A           98 GLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLL  177 (451)
T ss_dssp             HHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999    99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccch-hHHHHHhhHHHHHHHH-HHHhhcccchhHHHHhhccccCcchhhHHHHHHHHHHHhCCCCCCCChhhHHHHH
Q 016882          206 LVDLVAG-WRYMYGASTPLAVIMG-MGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEIL  283 (381)
Q Consensus       206 l~~~~~~-w~~~f~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (381)
                      +.+.. + ||+.|++.+++.++.. +..+++||+|+....++   +++.+...+                   .+.+   
T Consensus       178 l~~~~-g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-------------------~~~~---  231 (451)
T 1pw4_A          178 GMAWF-NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPP---IEEYKNDYP-------------------DDYN---  231 (451)
T ss_dssp             HHHHT-CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCS---CTTTCCC----------------------------
T ss_pred             HHHHh-ccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCC---hhhhccccc-------------------ccch---
Confidence            88776 7 9999999998887754 44566888775321110   000000000                   0000   


Q ss_pred             HhhhhccccccccchhhccccchHHHHHHHHHHHHHHhhchhHHHhcHHHHHHH-cCCCCCchhHHHHHHHHHHHHHHhH
Q 016882          284 TELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGLFKVGSCT  362 (381)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~i~~~  362 (381)
                      ++.+++...++...+++++++..+...+    ..+....+...+..|.|.++++ .|+ +..+......+.++..+++.+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~  306 (451)
T 1pw4_A          232 EKAEQELTAKQIFMQYVLPNKLLWYIAI----ANVFVYLLRYGILDWSPTYLKEVKHF-ALDKSSWAYFLYEYAGIPGTL  306 (451)
T ss_dssp             -------CCTHHHHHHTSSCHHHHHHHH----HHHHHHHHHHHHHHHHHHHBTTBSCC-CHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccccccchHHHHHcCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHH
Confidence            0000001111111355566543333322    2233333456677888888887 588 767777888888888888877


Q ss_pred             HHH
Q 016882          363 LFF  365 (381)
Q Consensus       363 ~~~  365 (381)
                      +..
T Consensus       307 ~~g  309 (451)
T 1pw4_A          307 LCG  309 (451)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            754

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.91  E-value=3.1e-24  Score=199.17  Aligned_cols=251  Identities=14%  Similarity=0.114  Sum_probs=197.3

Q ss_pred             HHHHHHhhhcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 016882           56 FPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYL  135 (381)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~  135 (381)
                      ..++..+..++......+..|.+.++       +|.+..+.+++.+++.++..+++++.|+++||+|||+.+.++.++..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   76 (375)
T 2gfp_A            4 MLVLLVAVGQMAQTIYIPAIADMARD-------LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFM   76 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTT-------SSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence            34455566677777778888888887       89999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHH
Q 016882          136 VGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRY  215 (381)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~  215 (381)
                      ++.++.+++++++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+.+.. +||+
T Consensus        77 ~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~  155 (375)
T 2gfp_A           77 LATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMW-NWRA  155 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHH-HHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc-cHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998876 9999


Q ss_pred             HHHhhHHHHHHHHH-HHhhcccchhHHHHhhccccCcchhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhhcccccc
Q 016882          216 MYGASTPLAVIMGM-GMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKE  294 (381)
Q Consensus       216 ~f~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (381)
                      .|++.+++.++..+ ..+++||+++..   +                                           ++++.+
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-------------------------------------------~~~~~~  189 (375)
T 2gfp_A          156 CYLFLLVLCAGVTFSMARWMPETRPVD---A-------------------------------------------PRTRLL  189 (375)
T ss_dssp             HHHHHHHHHHHHHCCCCCSSCCCSTTT---C-------------------------------------------CCCCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHCcccCCCC---c-------------------------------------------ccccHH
Confidence            99999888877655 445577765310   0                                           001123


Q ss_pred             ccchhhccccchHHHHHHHHHHHHHHhhchhHHHhcHHHHHHH-cCCCCCchhHHHHHHHHHHHHHHhHHHH
Q 016882          295 VSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGLFKVGSCTLFF  365 (381)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~i~~~~~~  365 (381)
                      .+++++++++..+...+...+    .......+..+.|.++++ .|+ +..+........++..+++.++.-
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~-~~~~~g~~~~~~~~~~~~~~~~~~  256 (375)
T 2gfp_A          190 TSYKTLFGNSGFNCYLLMLIG----GLAGIAAFEACSGVLMGAVLGL-SSMTVSILFILPIPAAFFGAWFAG  256 (375)
T ss_dssp             TCSTHHHHHHHHHHHHHHHHH----HHHHHHHHHHHCSCSSHHHHHH-HHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCcchHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345666766544443333322    223345555666666655 577 556666677777777776666533

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.86  E-value=4.1e-20  Score=177.52  Aligned_cols=144  Identities=15%  Similarity=0.125  Sum_probs=134.0

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHh-hchHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADI-LGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHA  167 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~  167 (381)
                      +|.+..+.+++.+++.++..++++++|+++|| +|||+++.++.++.+++.++++++++++.++++|++.|++.+...+.
T Consensus        49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~  128 (491)
T 4aps_A           49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPN  128 (491)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccch
Confidence            79999999999999999999999999999999 89999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCccc--chhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHhh
Q 016882          168 APMYIAETAPTPM--RGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW  233 (381)
Q Consensus       168 ~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~~  233 (381)
                      ..+++.|++|+++  |+.++++++.+..+|..++|.+++.+.+.. +||+.|++.++..++.++..++
T Consensus       129 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-g~~~~f~~~~~~~~~~~~~~~~  195 (491)
T 4aps_A          129 VSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA-GYHVAFSLAAIGMFIGLLVYYF  195 (491)
T ss_dssp             HHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999988  777888899999999999999999999877 9999999988877765555443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.74  E-value=6.7e-17  Score=156.44  Aligned_cols=142  Identities=18%  Similarity=0.200  Sum_probs=131.4

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-chHHHHHHHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHHHHhhHhHHH
Q 016882           91 LSSVEIGLITSGSLYGALIGSILAFNIADIL-GRRRELILAALLYLVGALVTALAP-DFIIMVVGRFVFGIGIGLAMHAA  168 (381)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-Grk~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~r~l~G~~~g~~~~~~  168 (381)
                      .+..+.+++.+++.++..++++++|+++||+ |||+++.++.++.+++.+++++++ +++.++++|++.|++.+...+..
T Consensus        51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~  130 (524)
T 2xut_A           51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLV  130 (524)
T ss_dssp             TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhH
Confidence            9999999999999999999999999999999 999999999999999999999998 99999999999999999999999


Q ss_pred             HHHHHhhCCcccchhHHhH---HHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHhh
Q 016882          169 PMYIAETAPTPMRGQLISL---KEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW  233 (381)
Q Consensus       169 ~~~~~~~~~~~~r~~~~~~---~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~~  233 (381)
                      .+++.|++|+++|+++.+.   .+.+..+|..++|.+++.+.+.. +||+.|++.+++.++.++..++
T Consensus       131 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-g~~~~f~~~~~~~~~~~~~~~~  197 (524)
T 2xut_A          131 SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF-GAAVAFGIPGVLMFVATVFFWL  197 (524)
T ss_dssp             HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS-CHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999877666   89999999999999999998876 9999999998887766555444

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.59  E-value=1.8e-16  Score=149.05  Aligned_cols=146  Identities=18%  Similarity=0.200  Sum_probs=100.0

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH---HHHhchHH-HHHHHHHHHHHHHhhH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALV---TALAPDFI-IMVVGRFVFGIGIGLA  164 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~---~~~~~~~~-~~~~~r~l~G~~~g~~  164 (381)
                      +|++..+.+++.+++.++..++++++|+++||+|||++++++..+..++...   ..+.+... .+..++.+.|++.+..
T Consensus        38 ~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  117 (417)
T 2cfq_A           38 NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFC  117 (417)
T ss_dssp             TCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHH
T ss_pred             hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7999999999999999999999999999999999999999888776543211   12222111 1233444444444433


Q ss_pred             hHHHHHHHHhhCCc--ccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHhhccc
Q 016882          165 MHAAPMYIAETAPT--PMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPA  236 (381)
Q Consensus       165 ~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~~~~~  236 (381)
                      .+.....+.++.++  ++|+...+.......+|..++|.+++.+.+.  +||+.|++.+++.++.++..++.++
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~--~~~~~f~~~~~~~~~~~~~~~~~~~  189 (417)
T 2cfq_A          118 FNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI--NNQFVFWLGSGCALILAVLLFFAKT  189 (417)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHH--CSHHHHTTTTTTTTTHHHHSCSSCC
T ss_pred             HhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHh--chhHHHHHHHHHHHHHHHHHHHcCc
Confidence            33333333333332  4556667777777889999999999998863  7999999888776555544444443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.59  E-value=8e-14  Score=131.88  Aligned_cols=145  Identities=16%  Similarity=0.151  Sum_probs=128.3

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh--chHHHHHHHHHHHH-HHHHHHHHh--chHHHHHHHHHHHHHHHhh
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADIL--GRRRELILAALLYL-VGALVTALA--PDFIIMVVGRFVFGIGIGL  163 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--Grk~~l~~~~~~~~-~~~~~~~~~--~~~~~~~~~r~l~G~~~g~  163 (381)
                      +|.+..+.+++.++..++..++.++.|++.||+  |||+.+.++..+.. ++.++..+.  .+.+.+.++.++.|++.+.
T Consensus       283 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  362 (451)
T 1pw4_A          283 KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYG  362 (451)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhc
Confidence            689999999999999999999999999999999  99999888877766 666655555  3678888888999999998


Q ss_pred             HhHHHHHHHHhhCCcccchhHHhHHHHHHHH-HHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHhhc
Q 016882          164 AMHAAPMYIAETAPTPMRGQLISLKEFFIVL-GMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWL  234 (381)
Q Consensus       164 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~~~  234 (381)
                      ..+....++.|.+|+++|++++++.+....+ |..+++.+.+.+.+.. ||+..|++.+++.++..++.++.
T Consensus       363 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          363 PVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF-GWDGGFMVMIGGSILAVILLIVV  433 (451)
T ss_dssp             HHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-CSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHHHHHH
Confidence            8898899999999999999999999999999 9999999999999987 89999999998888776665554

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.47  E-value=4.5e-13  Score=125.84  Aligned_cols=146  Identities=14%  Similarity=0.131  Sum_probs=123.8

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHHHHH
Q 016882           92 SSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMY  171 (381)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~  171 (381)
                      +....+++.++..++..++.++.|++.||+|||+.+..+.++.+++.++.++.++.+.+++..++.+++.+...+....+
T Consensus       257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  336 (417)
T 2cfq_A          257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY  336 (417)
T ss_dssp             HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45567888888889999999999999999999999999888888877777777788888888888888887777778899


Q ss_pred             HHhhCCcccchhHHhH-HHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHhh-cccch
Q 016882          172 IAETAPTPMRGQLISL-KEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW-LPASP  238 (381)
Q Consensus       172 ~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~~-~~~~~  238 (381)
                      ++|.+|++.|+++.++ ++....+|..++|.+++.+.+.. |++..|.+.+++.++..+..++ .||++
T Consensus       337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~-g~~~~f~~~~~~~l~~~~~~~~~~~~~~  404 (417)
T 2cfq_A          337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI-GFQGAYLVLGLVALGFTLISVFTLSGPG  404 (417)
T ss_dssp             HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS-HHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred             HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc-CcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence            9999999999999999 48888999999999999998876 8999999888888776655444 55543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.43  E-value=9.5e-13  Score=124.01  Aligned_cols=142  Identities=8%  Similarity=-0.030  Sum_probs=120.6

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA  168 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~  168 (381)
                      +|.+..+.+++.++..++..++.++.|++.||+|||+.+.++.++..++.++..+.++.+.++.. ++.|++.+...+..
T Consensus       290 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~  368 (438)
T 3o7q_A          290 PGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL-TLCSAFMSIQYPTI  368 (438)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHTTHHHHH
T ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-HHHHHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999998888888887665444 88899999999999


Q ss_pred             HHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHhh
Q 016882          169 PMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW  233 (381)
Q Consensus       169 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~~  233 (381)
                      .++..|.+|++ ++.+.++.. ...+|..++|.+.+.+.+..++++..|++.+++.++.++..++
T Consensus       369 ~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  431 (438)
T 3o7q_A          369 FSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFARF  431 (438)
T ss_dssp             HHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHHTT
T ss_pred             HHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence            99999999966 888888877 5569999999999999988733998888776665554444333

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.33  E-value=3.8e-11  Score=114.82  Aligned_cols=151  Identities=15%  Similarity=0.036  Sum_probs=110.0

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhc----hHHHHHHHHHHHHHH-Hhh
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAP----DFIIMVVGRFVFGIG-IGL  163 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~r~l~G~~-~g~  163 (381)
                      .+.+............+...++.++.+++.||+|||+.++.+.....++.+..+...    ..+..+++-++...+ ..+
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (491)
T 4gc0_A          307 LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMS  386 (491)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred             cCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhH
Confidence            466777777778888899999999999999999999999998888887766654421    122222222222222 223


Q ss_pred             HhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhccc-----chhHHHHHhhHHHHHHHHH-HHhhcccc
Q 016882          164 AMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV-----AGWRYMYGASTPLAVIMGM-GMWWLPAS  237 (381)
Q Consensus       164 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-----~~w~~~f~i~~~~~~~~~~-~~~~~~~~  237 (381)
                      ..+....+.+|.+|.+.|+++.++......+|..+++.+...+.+..     .++.+.|++.++++++..+ .++++||+
T Consensus       387 ~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET  466 (491)
T 4gc0_A          387 WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET  466 (491)
T ss_dssp             TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence            45677889999999999999999999999999999888776654321     1455677888888777554 55679998


Q ss_pred             hh
Q 016882          238 PR  239 (381)
Q Consensus       238 ~~  239 (381)
                      ..
T Consensus       467 kg  468 (491)
T 4gc0_A          467 KG  468 (491)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.31  E-value=8.1e-12  Score=119.56  Aligned_cols=143  Identities=12%  Similarity=0.031  Sum_probs=114.3

Q ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHH-----HHHHHHHHHHHHHHHhc---------hHHHHHHHHH
Q 016882           90 DLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELI-----LAALLYLVGALVTALAP---------DFIIMVVGRF  155 (381)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~-----~~~~~~~~~~~~~~~~~---------~~~~~~~~r~  155 (381)
                      +.+..+.+++.+...++..++.++.+++.||+|||+...     .+.++.+++.++.....         +.+.+.++.+
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (491)
T 4aps_A          315 DSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWA  394 (491)
T ss_dssp             CCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHH
T ss_pred             ccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHH
Confidence            444455677788888899999999999999999986654     67777777666665543         6677888889


Q ss_pred             HHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHhhc
Q 016882          156 VFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWL  234 (381)
Q Consensus       156 l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~~~  234 (381)
                      +.|++.+...+....++.|.+|+++|+++.++.+....+|..+++.+.+.+.+.  ++.+.|++.++++++..+..+++
T Consensus       395 l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  471 (491)
T 4aps_A          395 LVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK--SEVAYFSYFGLGSVVLGIVLVFL  471 (491)
T ss_dssp             HHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS--STTHHHHHTHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999998999999999999999999999999999999999999999888765  56677887777777655554443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.01  E-value=1.6e-10  Score=106.43  Aligned_cols=129  Identities=16%  Similarity=0.095  Sum_probs=103.2

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH-HHHHHH--HHHH--hchHHHHHHHHHHHHHHHhh
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALL-YLVGAL--VTAL--APDFIIMVVGRFVFGIGIGL  163 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~-~~~~~~--~~~~--~~~~~~~~~~r~l~G~~~g~  163 (381)
                      +|.+..+.+++.+...++..++.++.+++.||+|++.  ..+..+ ...+..  ....  .++.+.+++..++.|++.+.
T Consensus       230 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~  307 (375)
T 2gfp_A          230 LGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGM  307 (375)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHH
Confidence            5888999999999999999999999999999999833  233322 222221  2222  23677788888999999999


Q ss_pred             HhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhH
Q 016882          164 AMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGAST  221 (381)
Q Consensus       164 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~  221 (381)
                      ..+....++.|..| ++|+++.++.+....+|..+++.+.+.+.+.. +|+..+++.+
T Consensus       308 ~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~-~~~~~~~~~~  363 (375)
T 2gfp_A          308 LFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTG-QGSLGLLMTL  363 (375)
T ss_dssp             TSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHH-HHHHHHHHHH
T ss_pred             hhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccHHHHHHH
Confidence            99999999999998 89999999999999999999999999987764 7777776643

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.69  E-value=1.4e-08  Score=97.83  Aligned_cols=138  Identities=9%  Similarity=0.041  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH----Hhhch----HHHHHHHHHHHHHHHHHHHHh---------chHHHHHHHHHHHH
Q 016882           96 IGLITSGSLYGALIGSILAFNIA----DILGR----RRELILAALLYLVGALVTALA---------PDFIIMVVGRFVFG  158 (381)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~g~l~----d~~Gr----k~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~r~l~G  158 (381)
                      .+++.+...++..++.++.+++.    +|.|+    ++.+.++.++.+++.++.++.         .+.+.+++..++.|
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  416 (524)
T 2xut_A          337 PAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLT  416 (524)
T ss_dssp             HHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHH
Confidence            45566666666667777666654    55443    356667777777777766653         36677888889999


Q ss_pred             HHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhccc-chh---------HHHHHhhHHHHHHHH
Q 016882          159 IGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV-AGW---------RYMYGASTPLAVIMG  228 (381)
Q Consensus       159 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~w---------~~~f~i~~~~~~~~~  228 (381)
                      ++.+...+...+++.|..|+++|++++|+.+....+|..+++.+.+.+.+.. .+|         +..|++.+++.++..
T Consensus       417 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  496 (524)
T 2xut_A          417 FGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAA  496 (524)
T ss_dssp             HHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999988642 134         334666676666655


Q ss_pred             HHHhh
Q 016882          229 MGMWW  233 (381)
Q Consensus       229 ~~~~~  233 (381)
                      +..++
T Consensus       497 ~~~~~  501 (524)
T 2xut_A          497 IVFAL  501 (524)
T ss_dssp             HHHC-
T ss_pred             HHHHH
Confidence            54443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	381
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	5e-09
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	4e-06
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	0.002

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 55.5 bits (132), Expect = 5e-09
 Identities = 22/165 (13%), Positives = 48/165 (29%), Gaps = 4/165 (2%)

Query: 80  SPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGAL 139
           +  +  +     S  ++G   SG          +  +++D    R  L    +L     L
Sbjct: 45  ALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVML 104

Query: 140 VTALAPD----FIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLG 195
                P       +M V  F+ G   G+        +        RG ++S+      +G
Sbjct: 105 FMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVG 164

Query: 196 MVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRW 240
                 +  L +     W          A+++ +  + +      
Sbjct: 165 GGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ 209

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 46.3 bits (108), Expect = 4e-06
 Identities = 25/182 (13%), Positives = 56/182 (30%), Gaps = 5/182 (2%)

Query: 89  YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFI 148
             +S  + G+I +     +L+   L   ++D LG R+ L+      LV      +     
Sbjct: 38  NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGP 97

Query: 149 IMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYG--IGSLL 206
           ++     V  I  G+ +       A      +          F    M G  G  +G+ +
Sbjct: 98  LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASI 157

Query: 207 VDLVA---GWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCL 263
           V ++         +  S    ++  +  +    +P    +             + A+   
Sbjct: 158 VGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELF 217

Query: 264 CR 265
            +
Sbjct: 218 RQ 219

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 37.4 bits (85), Expect = 0.002
 Identities = 17/116 (14%), Positives = 42/116 (36%), Gaps = 2/116 (1%)

Query: 129 LAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLK 188
           LA  +  V  + ++ A   + +V+ + +    +   +     YI           +  + 
Sbjct: 294 LAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVC 353

Query: 189 -EFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLL 243
             FF  L M+    +   + + + G++  Y     +A+   +   +  + P  L L
Sbjct: 354 FCFFKQLAMIFMSVLAGNMYESI-GFQGAYLVLGLVALGFTLISVFTLSGPGPLSL 408

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	381
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.95
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.6
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.58
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.51

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=7.6e-27  Score=218.86  Aligned_cols=280  Identities=14%  Similarity=0.044  Sum_probs=203.2

Q ss_pred             HHHHHHHHHHHHHhhhcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Q 016882           49 AAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELI  128 (381)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~  128 (381)
                      ..|..++...++++..+++...++...|.+.+        +|+|.++.|++.+++.+++.++++++|+++||+|||+++.
T Consensus        22 ~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~~--------~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~   93 (447)
T d1pw4a_          22 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVE--------QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLP   93 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTS--------STTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHH
Confidence            34555666777788888888888888887765        6999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhc----hHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHH
Q 016882          129 LAALLYLVGALVTALAP----DFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGS  204 (381)
Q Consensus       129 ~~~~~~~~~~~~~~~~~----~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  204 (381)
                      ++.++.+++.+++++++    +++.++++|++.|++.|...+....++.|++|+++|++++++.+.+..+|..+++.+++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~  173 (447)
T d1pw4a_          94 AGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFL  173 (447)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred             HHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhh
Confidence            99999999999888764    67889999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcccchhHHHHHhhHHHHHHHHHH-HhhcccchhHHHHhhccccCcchhhHHHHHHHHHHHhCCCCCCCChhhHHHHH
Q 016882          205 LLVDLVAGWRYMYGASTPLAVIMGMG-MWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEIL  283 (381)
Q Consensus       205 ~l~~~~~~w~~~f~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (381)
                      .+.....+||+.|++.+++.++..+. .++.+++|+......   .++                    .+  ....++..
T Consensus       174 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--------------------~~--~~~~~~~~  228 (447)
T d1pw4a_         174 LGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPP---IEE--------------------YK--NDYPDDYN  228 (447)
T ss_dssp             HHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCS---CTT--------------------TC--CC------
T ss_pred             hHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccch---hhh--------------------hh--hhcccchh
Confidence            88876669999999998888775544 445666654311110   000                    00  00000000


Q ss_pred             HhhhhccccccccchhhccccchHHHHHHHHHHHHHHhhchhHHHhcHHHHHHHc-CCCCCchhHHHHHHHHHHHHHHhH
Q 016882          284 TELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSA-GFSAASDATRVSILLGLFKVGSCT  362 (381)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~~  362 (381)
                      +..+++...++...+..++++..+.    .....+...........|.+.++++. |+ +..++.....+..+..+++.+
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  303 (447)
T d1pw4a_         229 EKAEQELTAKQIFMQYVLPNKLLWY----IAIANVFVYLLRYGILDWSPTYLKEVKHF-ALDKSSWAYFLYEYAGIPGTL  303 (447)
T ss_dssp             -------CCTHHHHHHTSSCHHHHH----HHHHHHHHHHHHHHHHHHHHHHBTTBSCC-CHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccccccchhhHHHHHHHcCchHHH----HHHHhhhhhhhhhcchhhhhhhccccccc-ccchhhhhhhcchhhhhhhhh
Confidence            0111112222333445555433222    22222233333456667777777654 77 777888888888888888888


Q ss_pred             HHHH
Q 016882          363 LFFM  366 (381)
Q Consensus       363 ~~~~  366 (381)
                      ++..
T Consensus       304 ~~g~  307 (447)
T d1pw4a_         304 LCGW  307 (447)
T ss_dssp             HHHH
T ss_pred             hhhh
Confidence            7543

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.60  E-value=1.9e-15  Score=137.91  Aligned_cols=147  Identities=14%  Similarity=0.127  Sum_probs=131.8

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHH
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA  168 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~  168 (381)
                      .+.+....+...+...++..++..+.+++.||+|+|+.+.++.++.+++.++..+.++.+.+++..++.|++.+...+..
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~  333 (417)
T d1pv7a_         254 GEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGC  333 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHH
Confidence            45667788888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCcccchhHHhHH-HHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHhh-ccc
Q 016882          169 PMYIAETAPTPMRGQLISLK-EFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW-LPA  236 (381)
Q Consensus       169 ~~~~~~~~~~~~r~~~~~~~-~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~~-~~~  236 (381)
                      .+++.|.+|+++|++..++. +....+|..++|.+.+.+.+.. ||+..|++.+++.++..++.++ +++
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~l~~  402 (417)
T d1pv7a_         334 FKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI-GFQGAYLVLGLVALGFTLISVFTLSG  402 (417)
T ss_dssp             HHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            99999999999999999985 5677899999999999999987 9999999998888776554444 443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.58  E-value=9.1e-16  Score=140.10  Aligned_cols=165  Identities=15%  Similarity=0.109  Sum_probs=113.9

Q ss_pred             cccccccccccc-ccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHh
Q 016882           66 YDIGSTSCATIS-IESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALA  144 (381)
Q Consensus        66 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~  144 (381)
                      +..+...+.+|. +.++       +|+|..+.|++.+++.++..++++++|+++||+|||++++++..+..++..+..+.
T Consensus        21 ~~~~~~~~~l~~~l~~~-------~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~   93 (417)
T d1pv7a_          21 FIMGAYFPFFPIWLHDI-------NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIF   93 (417)
T ss_dssp             HHHHHHHHHHHHHHHHH-------HCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHc-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHh
Confidence            334444555665 3344       79999999999999999999999999999999999999999999999888888887


Q ss_pred             chHHHHH----HHHHHHHHHHhhHhHHHHHHHHhhCCc--ccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHH
Q 016882          145 PDFIIMV----VGRFVFGIGIGLAMHAAPMYIAETAPT--PMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYG  218 (381)
Q Consensus       145 ~~~~~~~----~~r~l~G~~~g~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~  218 (381)
                      .+.....    +.+.+.+.+.+...........+..++  +++....+........+..+++.+++.+.+.  +|+..+.
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~  171 (417)
T d1pv7a_          94 IFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI--NNQFVFW  171 (417)
T ss_dssp             THHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH--CHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc--ccccccc
Confidence            6655443    344444444444443433333333322  3445566677788888999999999988776  4555555


Q ss_pred             hhHHH-HHHHHHHHhhcccchh
Q 016882          219 ASTPL-AVIMGMGMWWLPASPR  239 (381)
Q Consensus       219 i~~~~-~~~~~~~~~~~~~~~~  239 (381)
                      ..... .+..++..++.+++++
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~  193 (417)
T d1pv7a_         172 LGSGCALILAVLLFFAKTDAPS  193 (417)
T ss_dssp             HHHHHHHHHHHHHHSSCCCSCS
T ss_pred             chhhHHHHHHHHHHHHhccccc
Confidence            44444 4445555566666654

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.51  E-value=1.7e-13  Score=126.82  Aligned_cols=144  Identities=16%  Similarity=0.127  Sum_probs=115.5

Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH-----hchHHHHHHHHHHHHHHHhh
Q 016882           89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTAL-----APDFIIMVVGRFVFGIGIGL  163 (381)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~r~l~G~~~g~  163 (381)
                      ++.+..+.++..++..++..++.++.|++.||++||+..........+..+....     ..+.+...++.++.|++.+.
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  359 (447)
T d1pw4a_         280 KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYG  359 (447)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTH
T ss_pred             cccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence            6889999999999999999999999999999999875544433333322222221     34677888888899999888


Q ss_pred             HhHHHHHHHHhhCCcccchhHHhHHHHHHHH-HHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHhh
Q 016882          164 AMHAAPMYIAETAPTPMRGQLISLKEFFIVL-GMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW  233 (381)
Q Consensus       164 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~~  233 (381)
                      ..+....+..|.+|++.|+++.|+.+....+ |.+++|.+.+.+.+.. ||+..|++.+++.++..++..+
T Consensus       360 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~-g~~~~~~~~~~~~~~~~~~~~~  429 (447)
T d1pw4a_         360 PVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF-GWDGGFMVMIGGSILAVILLIV  429 (447)
T ss_dssp             HHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-CSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHH
Confidence            8899999999999999999999998877666 5677899999999987 9999999888877776554444