Citrus Sinensis ID: 016891

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-
MAGLPTDINIDILSRLSVKCLLRFKCVSKSFCSLIDSQEFIKIHLKRSIETNSNLSLILSGTPAPILDSSRYWGGKIFSAGLDSLNLGVELDHPFKNCKGRTPIIDSCNGLIAFKNDENGIALWNPSTEEHLILPKFWGDLKDFMVVDGFGYDAVNDDYKVVRLVQLVIGNVGYTEIAVYSLRTNSWRRIRVDFPYYILHGWDGTFADGHVHWLVTNNPEDYIENLIIAFNLKSEEFHEVPLPHLENRNDVLVMFVGNFSGCLYFSCLCNYPQPVDIWVLMGCWTKTFSFPRSVGDYVKALAYSKSGGKVLVDKFEYGEDEDINRWELFWYDLQNQGAAADQVTIHGVPQGCRDTIVCVDSLVSLAACAGRGVAGREGRMS
cccccHHHHHHHHHcccHHHHHHcccccccHHHHcccHHHHHHHHHHcccccccEEEEEcccccccccccccccccccccccccccccEEcccccccccccccEEEEEccEEEEEcccccEEEEccccccEEEcccccccccccEEEEEEEEEcccccEEEEEEEEEEEcccccEEEEEEEcccccEEEEccccccEEEcccccEEEcccEEEEEEEccccccccEEEEEEccccEEEEEcccccccccccEEEEEEEEccEEEEEEEcccccEEEEEEEcccEEEEEEEcccccccccEEEEEEEccEEEEEEccccccccccccEEEEEEcccccEEEEEEEEEccccccccEEEEEcccccccccccccccccccccc
cccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccccEEEEEEEccccEEEccccccccccccccccccccccccccccccccEEEEEEEcccEEEEEEcccccEEEEccccccEEEcccccccccccEEEEEEEEccccccEEEEEEEEccccccccEEEEEEEcccccEEEEEcccccccccccccEEEEcEEEEEEEEcccccccEEEEEEEcccccccccccccccccccEEEEEEEEHEEEEEEEEccccccEEEEEEEEccccEEEEEccccccccccEEEEEcccEEEEEEEEcccccccccEEEEEEEccccEEEEEEEccccccccccEEEEEcccEEEEcccccccccccccccc
maglptdiniDILSRLSVKCLLRFKCVSKSFCSLIDSQEFIKIHLKRSIetnsnlslilsgtpapildssrywggkifsagldslnlgveldhpfknckgrtpiidscngliafkndengialwnpsteehlilpkfwgdlkdfmvvdgfgydavnddyKVVRLVQLVIGNVGYTEIAVYSLRTnswrrirvdfpyyilhgwdgtfadgHVHWlvtnnpedyIENLIIAFNlkseefhevplphlenrnDVLVMFVGNFsgclyfsclcnypqpvdIWVLMGCwtktfsfprsvGDYVKALAYsksggkvlvdkfeygededinRWELFWYDLqnqgaaadqvtihgvpqgcrdtiVCVDSLVSLAACagrgvagregrms
maglptdinidilsRLSVKCLLRFKCVSKSFCSLIDSQEFIKIHLKRSietnsnlslilsGTPAPILDSSRYWGGKIFSAGLDSLNLGVELDHPFKNCKGRTPIIDSCNGLIAFKNDENGIALWNPSTEEHLILPKFWGDLKDFMVVDGFGYDAVNDDYKVVRLVQLVIGNVGYTEIAVyslrtnswrrIRVDFPYYILHGWDGTFADGHVHWLVTNNPEDYIENLIIAFNLKSEEFHEVPLPHLENRNDVLVMFVGNFSGCLYFSCLCNYPQPVDIWVLMGCWTKTFSFPRSVGDYVKALaysksggkvlvdKFEYGEDEDINRWELFWYDLQNQGAAADQVTIHGVPQGCRDTIVCVDSLVSLAacagrgvagregrms
MAGLPTDINIDILSRLSVKCLLRFKCVSKSFCSLIDSQEFIKIHLKRSIETNSNLSLILSGTPAPILDSSRYWGGKIFSAGLDSLNLGVELDHPFKNCKGRTPIIDSCNGLIAFKNDENGIALWNPSTEEHLILPKFWGDLKDFMVVDGFGYDAVNDDYKVVRLVQLVIGNVGYTEIAVYSLRTNSWRRIRVDFPYYILHGWDGTFADGHVHWLVTNNPEDYIENLIIAFNLKSEEFHEVPLPHLENRNDVLVMFVGNFSGCLYFSCLCNYPQPVDIWVLMGCWTKTFSFPRSVGDYVKALAYSKSGGKVLVDKFEYGEDEDINRWELFWYDLQNQGAAADQVTIHGVPQGCRDTIVCVDSLVSLAACAGRGVAGREGRMS
******DINIDILSRLSVKCLLRFKCVSKSFCSLIDSQEFIKIHLKRSIETNSNLSLILSGTPAPILDSSRYWGGKIFSAGLDSLNLGVELDHPFKNCKGRTPIIDSCNGLIAFKNDENGIALWNPSTEEHLILPKFWGDLKDFMVVDGFGYDAVNDDYKVVRLVQLVIGNVGYTEIAVYSLRTNSWRRIRVDFPYYILHGWDGTFADGHVHWLVTNNPEDYIENLIIAFNLKSEEFHEVPLPHLENRNDVLVMFVGNFSGCLYFSCLCNYPQPVDIWVLMGCWTKTFSFPRSVGDYVKALAYSKSGGKVLVDKFEYGEDEDINRWELFWYDLQNQGAAADQVTIHGVPQGCRDTIVCVDSLVSLAACAGRGV********
*AGLPTDINIDILSRLSVKCLLRFKCVSKSFCSLIDSQEFIKIHLKRSIETNSNLSLILSGTPAPILDSSRYWGGKIFSAGLDSLNLGVELDHPFKNCKGRTPIIDSCNGLIAFKNDENGIALWNPSTEEHLILPKFWGDLKDFMVVDGFGYDAVNDDYKVVRLVQLVIGNVGYTEIAVYSLRTNSWRRIRVDFPYYILHGWDGTFADGHVHWLVTNNPEDYIENLIIAFNLKSEEFHEVPLPHLENRNDVLVMFVGNFSGCLYFSCLCNYPQPVDIWVLMGCWTKTFSFPRSVGDYVKALAYSKSGGKVLVDKFEYGEDEDINRWELFWYDLQNQGAAADQVTIHGVPQGCRDTIVCVDSLV******************
MAGLPTDINIDILSRLSVKCLLRFKCVSKSFCSLIDSQEFIKIHLKRSIETNSNLSLILSGTPAPILDSSRYWGGKIFSAGLDSLNLGVELDHPFKNCKGRTPIIDSCNGLIAFKNDENGIALWNPSTEEHLILPKFWGDLKDFMVVDGFGYDAVNDDYKVVRLVQLVIGNVGYTEIAVYSLRTNSWRRIRVDFPYYILHGWDGTFADGHVHWLVTNNPEDYIENLIIAFNLKSEEFHEVPLPHLENRNDVLVMFVGNFSGCLYFSCLCNYPQPVDIWVLMGCWTKTFSFPRSVGDYVKALAYSKSGGKVLVDKFEYGEDEDINRWELFWYDLQNQGAAADQVTIHGVPQGCRDTIVCVDSLVSLAACAGR**********
*AGLPTDINIDILSRLSVKCLLRFKCVSKSFCSLIDSQEFIKIHLKRSIETNSNLSLILSGTPAPILDSSRYWGGKIFSAGLDSLNLGVELDHPFKNCKGRTPIIDSCNGLIAFKNDENGIALWNPSTEEHLILPKFWGDLKDFMVVDGFGYDAVNDDYKVVRLVQLVIGNVGYTEIAVYSLRTNSWRRIRVDFPYYILHGWDGTFADGHVHWLVTNNPEDYIENLIIAFNLKSEEFHEVPLPHLENRNDVLVMFVGNFSGCLYFSCLCNYPQPVDIWVLMGCWTKTFSFPRSVGDYVKALAYSKSGGKVLVDKFEYGEDEDINRWELFWYDLQNQGAAADQVTIHGVPQGCRDTIVCVDSLVSLAAC*************
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MAGLPTDINIDILSRLSVKCLLRFKCVSKSFCSLIDSQEFIKIHLKRSIETNSNLSLILSGTPAPILDSSRYWGGKIFSAGLDSLNLGVELDHPFKNCKGRTPIIDSCNGLIAFKNDENGIALWNPSTEEHLILPKFWGDLKDFMVVDGFGYDAVNDDYKVVRLVQLVIGNVGYTEIAVYSLRTNSWRRIRVDFPYYILHGWDGTFADGHVHWLVTNNPEDYIENLIIAFNLKSEEFHEVPLPHLENRNDVLVMFVGNFSGCLYFSCLCNYPQPVDIWVLMGCWTKTFSFPRSVGDYVKALAYSKSGGKVLVDKFEYGEDEDINRWELFWYDLQNQGAAADQVTIHGVPQGCRDTIVCVDSLVSLAACAGRGVAGREGRMS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query381 2.2.26 [Sep-21-2011]
Q9SU30413 F-box protein CPR30 OS=Ar yes no 0.892 0.823 0.344 2e-42
Q9SUY0402 F-box protein At4g22390 O no no 0.811 0.768 0.305 2e-31
Q8GXC7427 F-box/kelch-repeat protei no no 0.695 0.620 0.3 4e-22
Q9LU24360 Putative F-box protein At no no 0.847 0.897 0.260 8e-21
Q9LIR8364 F-box/kelch-repeat protei no no 0.871 0.912 0.279 3e-19
Q7X7A9312 F-box protein At1g11270 O no no 0.601 0.733 0.307 2e-14
Q4PSN6410 F-box/WD-40 repeat-contai no no 0.669 0.621 0.264 1e-13
Q9FZF8389 Putative F-box protein At no no 0.784 0.768 0.267 4e-13
Q84X43295 F-box only protein 8 OS=A no no 0.590 0.762 0.265 7e-13
Q9LX89445 F-box protein At5g10340 O no no 0.661 0.566 0.288 3e-12
>sp|Q9SU30|CPR30_ARATH F-box protein CPR30 OS=Arabidopsis thaliana GN=CPR30 PE=1 SV=2 Back     alignment and function desciption
 Score =  173 bits (439), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 139/403 (34%), Positives = 204/403 (50%), Gaps = 63/403 (15%)

Query: 1   MAGLPTDINIDILSRLSVKCLLRFKCVSKSFCSLIDSQEFIKIHLKRSIETNSNLSLILS 60
           MA +P DI  DI  RL  K L+R + +SK    LI+  +FI+ HL R ++T  +L ++L 
Sbjct: 1   MATIPMDIVNDIFLRLPAKTLVRCRALSKPCYHLINDPDFIESHLHRVLQTGDHLMILLR 60

Query: 61  GTPAPILDSSRYWGGKIFSAGLDSLNLGVELDHPFKNCKGRTPIIDSCNGLIAFKNDENG 120
           G              +++S  LDSL+   +++HP K   G T +  S NGLI   N    
Sbjct: 61  G------------ALRLYSVDLDSLDSVSDVEHPMKR-GGPTEVFGSSNGLIGLSNSPTD 107

Query: 121 IALWNPSTEEHLILPKFWGDLKD-----FMVVDGFGYDAVNDDYKVVRLVQLVIGN---V 172
           +A++NPST +   LP    DL D       V  G GYD+V+DDYKVVR+VQ  I +   +
Sbjct: 108 LAVFNPSTRQIHRLPPSSIDLPDGSSTRGYVFYGLGYDSVSDDYKVVRMVQFKIDSEDEL 167

Query: 173 GYT---EIAVYSLRTNSWRRIR---------VDFPYYILH--GWDGTFADGHVHWLVTNN 218
           G +   E+ V+SL+ NSW+RI            F Y++L+  G+ G  A   +HW++   
Sbjct: 168 GCSFPYEVKVFSLKKNSWKRIESVASSIQLLFYFYYHLLYRRGY-GVLAGNSLHWVLPRR 226

Query: 219 PEDYIENLIIAFNLKSEEFHEVPLPH-LENRNDVLVMFVGNFSGCLYFSCLCNYPQP-VD 276
           P     NLI+ F+L  EEF  V  P  + N N  + M +G   GCL    +CNY Q  VD
Sbjct: 227 PGLIAFNLIVRFDLALEEFEIVRFPEAVANGNVDIQMDIGVLDGCL--CLMCNYDQSYVD 284

Query: 277 IWVL-----MGCWTKTFSF--PRSVG--DYVKALAYSKSGGKVLVDKFEYGEDEDINRWE 327
           +W++        WTK F+   P+SV    Y++ L YSK   KVL+         ++N  +
Sbjct: 285 VWMMKEYNVRDSWTKVFTVQKPKSVKSFSYMRPLVYSKDKKKVLL---------ELNNTK 335

Query: 328 LFWYDLQNQGAAADQVTIHGVPQGCRDTIVCVDSLVSLAACAG 370
           L W+DL+++  +   + I   P      +V V SLV    C G
Sbjct: 336 LVWFDLESKKMST--LRIKDCPSSYSAELV-VSSLV--LGCKG 373
Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Regulates negatively both salicylic acid (SA)-dependent and SA-independent defense signaling.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SUY0|FB244_ARATH F-box protein At4g22390 OS=Arabidopsis thaliana GN=At4g22390 PE=2 SV=3 Back     alignment and function description
>sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1 Back     alignment and function description
>sp|Q9LU24|FB145_ARATH Putative F-box protein At3g16210 OS=Arabidopsis thaliana GN=At3g16210 PE=4 SV=1 Back     alignment and function description
>sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana GN=At3g23880 PE=2 SV=1 Back     alignment and function description
>sp|Q7X7A9|FB4_ARATH F-box protein At1g11270 OS=Arabidopsis thaliana GN=At1g11270 PE=2 SV=1 Back     alignment and function description
>sp|Q4PSN6|FBW1_ARATH F-box/WD-40 repeat-containing protein 1 OS=Arabidopsis thaliana GN=FBW1 PE=2 SV=1 Back     alignment and function description
>sp|Q9FZF8|FB44_ARATH Putative F-box protein At1g47790 OS=Arabidopsis thaliana GN=At1g47790 PE=4 SV=1 Back     alignment and function description
>sp|Q84X43|FBX8_ARATH F-box only protein 8 OS=Arabidopsis thaliana GN=FBX8 PE=2 SV=1 Back     alignment and function description
>sp|Q9LX89|FB255_ARATH F-box protein At5g10340 OS=Arabidopsis thaliana GN=At5g10340 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query381
255583943389 ubiquitin-protein ligase, putative [Rici 0.887 0.868 0.386 1e-52
224089629396 f-box family protein [Populus trichocarp 0.905 0.871 0.361 2e-47
357448231388 F-box protein [Medicago truncatula] gi|3 0.866 0.850 0.337 1e-42
224053103408 predicted protein [Populus trichocarpa] 0.908 0.848 0.352 5e-41
357448235 704 F-box protein [Medicago truncatula] gi|3 0.887 0.480 0.333 6e-41
4725955408 putative protein [Arabidopsis thaliana] 0.892 0.833 0.344 1e-40
30682162413 F-box protein CPR30 [Arabidopsis thalian 0.892 0.823 0.344 1e-40
110738553413 hypothetical protein [Arabidopsis thalia 0.892 0.823 0.344 1e-40
357447909409 F-box protein [Medicago truncatula] gi|3 0.874 0.814 0.350 2e-40
224137296419 predicted protein [Populus trichocarpa] 0.876 0.797 0.329 7e-40
>gi|255583943|ref|XP_002532719.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223527546|gb|EEF29668.1| ubiquitin-protein ligase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  213 bits (543), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 149/386 (38%), Positives = 207/386 (53%), Gaps = 48/386 (12%)

Query: 1   MAGLPTDINIDILSRLSVKCLLRFKCVSKSFCSLIDSQEFIKIHLKRSIETNSNLSLILS 60
           M+ LP ++  +IL RL+ K LL  +CVSK + +LIDS  FI +HL  SIE+  NLS+IL 
Sbjct: 1   MSNLPLEMIAEILCRLTAKKLLCCRCVSKRWRTLIDSPTFIYLHLNHSIESPCNLSIILK 60

Query: 61  GTPAPILDSSRYWGGKIFSAGLDSLNLGVELDHPFKNCKGRTPIIDSCNGLIAFKNDENG 120
            +             +++S   D L+    LDHP         I+ SCNGL+   N  + 
Sbjct: 61  SS-------------ELYSLSFDLLDNIQPLDHPLMCYNHGVKILGSCNGLLCICNIVDD 107

Query: 121 IALWNPSTEEHLILPKFWGDLKDF-------MVVDGFGYDAVNDDYKVVRLVQL--VIGN 171
           IALWNPS   H ++P    +LK +       + V GFGYD  NDDYK+VR+ Q   V   
Sbjct: 108 IALWNPSIRAHRVVPYLPVELKRYFGMCSCRVSVFGFGYDLSNDDYKLVRIAQFGGVDRK 167

Query: 172 VGYTEIAVYSLRTNSWRRIRVDFPYYILH-GWDGTFADGHVHWLVTNNPEDYIENLIIAF 230
              +E+ V+SLR NSWRRI  D PY +L+ G +G +A+G +HWLV+ +P+  + + I+A 
Sbjct: 168 SFESEVKVFSLRKNSWRRI-ADMPYCVLYPGENGIYANGALHWLVSQDPDSTVADTIVAL 226

Query: 231 NLKSEEFHEVPLPHLENRNDVLVMFVGNFSGCLYFSCLCNYPQPVDIWVL-----MGCWT 285
           +L  E++H VP P   + N    M VG   GCL         + VD+WV+        W+
Sbjct: 227 DLGVEDYHVVPKPEFVDMN--CNMGVGVLQGCLSLLAYAR-SERVDVWVMEEYMVKESWS 283

Query: 286 KTFSFPR----SVGDYVKALAYSKSGGKVLVDKFEYGEDEDINRWELFWYDLQNQGAAAD 341
           K FS  R     +   +K LAYSKSG +VL+      E +++N   LFWYDL+ +     
Sbjct: 284 KLFSVARLEVIGILRSLKPLAYSKSGNEVLI------EHDNVN---LFWYDLKRKEVV-- 332

Query: 342 QVTIHGVPQGCRDTIVCVDSLVSLAA 367
            V I GVP      I CV SLV L A
Sbjct: 333 NVWIQGVPITFEAEI-CVGSLVPLNA 357

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224089629|ref|XP_002308787.1| f-box family protein [Populus trichocarpa] gi|222854763|gb|EEE92310.1| f-box family protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357448231|ref|XP_003594391.1| F-box protein [Medicago truncatula] gi|355483439|gb|AES64642.1| F-box protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|224053103|ref|XP_002297705.1| predicted protein [Populus trichocarpa] gi|222844963|gb|EEE82510.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357448235|ref|XP_003594393.1| F-box protein [Medicago truncatula] gi|355483441|gb|AES64644.1| F-box protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|4725955|emb|CAB41726.1| putative protein [Arabidopsis thaliana] gi|7267958|emb|CAB78299.1| putative protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|30682162|ref|NP_192993.2| F-box protein CPR30 [Arabidopsis thaliana] gi|145333023|ref|NP_001078377.1| F-box protein CPR30 [Arabidopsis thaliana] gi|142989747|sp|Q9SU30.2|CPR30_ARATH RecName: Full=F-box protein CPR30; AltName: Full=Protein CONSTITUTIVE EXPRESSER OF PR GENES 30 gi|332657747|gb|AEE83147.1| F-box protein CPR30 [Arabidopsis thaliana] gi|332657748|gb|AEE83148.1| F-box protein CPR30 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|110738553|dbj|BAF01202.1| hypothetical protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357447909|ref|XP_003594230.1| F-box protein [Medicago truncatula] gi|355483278|gb|AES64481.1| F-box protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|224137296|ref|XP_002322522.1| predicted protein [Populus trichocarpa] gi|222867152|gb|EEF04283.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query381
TAIR|locus:2135615413 CPR1 "AT4G12560" [Arabidopsis 0.900 0.830 0.335 6.8e-40
TAIR|locus:2127465402 AT4G22390 "AT4G22390" [Arabido 0.876 0.830 0.311 1.1e-32
TAIR|locus:2076196364 AT3G23880 "AT3G23880" [Arabido 0.866 0.906 0.298 1.2e-26
TAIR|locus:2082410427 AT3G06240 "AT3G06240" [Arabido 0.443 0.395 0.320 3.1e-24
TAIR|locus:2094947360 AT3G16210 "AT3G16210" [Arabido 0.860 0.911 0.255 2.3e-23
TAIR|locus:2202425389 AT1G47790 "AT1G47790" [Arabido 0.803 0.786 0.263 1.1e-13
TAIR|locus:2202099312 AT1G11270 "AT1G11270" [Arabido 0.658 0.804 0.310 2e-13
TAIR|locus:2141801426 AT4G38870 "AT4G38870" [Arabido 0.734 0.657 0.256 4.1e-13
TAIR|locus:2089473410 AT3G21410 "AT3G21410" [Arabido 0.729 0.678 0.278 4.7e-13
TAIR|locus:2100524390 AT3G52320 "AT3G52320" [Arabido 0.585 0.571 0.257 8.1e-13
TAIR|locus:2135615 CPR1 "AT4G12560" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 134/400 (33%), Positives = 202/400 (50%)

Query:     1 MAGLPTDINIDILSRLSVKCLLRFKCVSKSFCSLIDSQEFIKIHLKRSIETNSNLSLILS 60
             MA +P DI  DI  RL  K L+R + +SK    LI+  +FI+ HL R ++T  +L ++L 
Sbjct:     1 MATIPMDIVNDIFLRLPAKTLVRCRALSKPCYHLINDPDFIESHLHRVLQTGDHLMILLR 60

Query:    61 GTPAPILDSSRYWGGKIFSAGLDSLNLGVELDHPFKNCKGRTPIIDSCNGLIAFKNDENG 120
             G              +++S  LDSL+   +++HP K   G T +  S NGLI   N    
Sbjct:    61 GAL------------RLYSVDLDSLDSVSDVEHPMKR-GGPTEVFGSSNGLIGLSNSPTD 107

Query:   121 IALWNPSTEEHLILPKFWGDLKDFM-----VVDGFGYDAVNDDYKVVRLVQLVIGN---V 172
             +A++NPST +   LP    DL D       V  G GYD+V+DDYKVVR+VQ  I +   +
Sbjct:   108 LAVFNPSTRQIHRLPPSSIDLPDGSSTRGYVFYGLGYDSVSDDYKVVRMVQFKIDSEDEL 167

Query:   173 GYT---EIAVYSLRTNSWRRIR-----VD----FPYYILH--GWDGTFADGHVHWLVTNN 218
             G +   E+ V+SL+ NSW+RI      +     F Y++L+  G+ G  A   +HW++   
Sbjct:   168 GCSFPYEVKVFSLKKNSWKRIESVASSIQLLFYFYYHLLYRRGY-GVLAGNSLHWVLPRR 226

Query:   219 PEDYIENLIIAFNLKSEEFHEVPLPH-LENRNDVLVMFVGNFSGCLYFSCL-CNYPQP-V 275
             P     NLI+ F+L  EEF  V  P  + N N  + M +G   GCL   CL CNY Q  V
Sbjct:   227 PGLIAFNLIVRFDLALEEFEIVRFPEAVANGNVDIQMDIGVLDGCL---CLMCNYDQSYV 283

Query:   276 DIWVLM-----GCWTKTFSFPRSVGDYVKALAYSKSGGKVLVDKFEYGEDEDINRWELFW 330
             D+W++        WTK F+  +     VK+ +Y +    ++  K +     ++N  +L W
Sbjct:   284 DVWMMKEYNVRDSWTKVFTVQKPKS--VKSFSYMRP---LVYSKDKKKVLLELNNTKLVW 338

Query:   331 YDLQNQGAAADQVTIHGVPQGCRDTIVCVDSLVSLAACAG 370
             +DL+++  +   + I   P      +V V SLV    C G
Sbjct:   339 FDLESKKMST--LRIKDCPSSYSAELV-VSSLV--LGCKG 373
GO:0003674 "molecular_function" evidence=ND
GO:0005737 "cytoplasm" evidence=ISM;IDA
GO:0005515 "protein binding" evidence=IPI
GO:0005634 "nucleus" evidence=IDA
GO:0031348 "negative regulation of defense response" evidence=IMP
GO:0042177 "negative regulation of protein catabolic process" evidence=IMP
TAIR|locus:2127465 AT4G22390 "AT4G22390" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076196 AT3G23880 "AT3G23880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082410 AT3G06240 "AT3G06240" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2094947 AT3G16210 "AT3G16210" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202425 AT1G47790 "AT1G47790" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202099 AT1G11270 "AT1G11270" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2141801 AT4G38870 "AT4G38870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089473 AT3G21410 "AT3G21410" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2100524 AT3G52320 "AT3G52320" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SU30CPR30_ARATHNo assigned EC number0.34490.89230.8232yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query381
TIGR01640230 TIGR01640, F_box_assoc_1, F-box protein interactio 4e-24
smart0025641 smart00256, FBOX, A Receptor for Ubiquitination Ta 4e-07
pfam0064648 pfam00646, F-box, F-box domain 2e-06
pfam1293747 pfam12937, F-box-like, F-box-like 6e-04
>gnl|CDD|233502 TIGR01640, F_box_assoc_1, F-box protein interaction domain Back     alignment and domain information 
 Score = 98.6 bits (246), Expect = 4e-24
 Identities = 53/199 (26%), Positives = 84/199 (42%), Gaps = 9/199 (4%)

Query: 105 IDSCNGLIAFKNDENGIALWNPSTEEHLILPKFWGDLKDFMVVD-GFGYDAVNDDYKVVR 163
           +  C+GLI F      + +WNPST +   LP       +        GYD +   YKV+ 
Sbjct: 1   VVPCDGLICFSYG-KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLC 59

Query: 164 LVQLVIGNVGYTEIAVYSLRTNSWRRIRVDFPYYILHGWDGTFADGHVHWLVTNNPEDYI 223
                 GN   +E  VY+L +NSWR I    P++ L    G   +G +++L     +   
Sbjct: 60  FSD-RSGNRNQSEHQVYTLGSNSWRTIECSPPHHPLKSR-GVCINGVLYYL-AYTLKTNP 116

Query: 224 ENLIIAFNLKSEEFHEVPLPHLENRNDVLVMFVGNFSGCLYFSCLCNYPQPVDIWVL--- 280
           +  I++F++ SE F E       N + V  + + N+ G L            D+WVL   
Sbjct: 117 DYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKKDTNNFDLWVLNDA 176

Query: 281 -MGCWTKTFSFPRSVGDYV 298
               W+K F+ P      +
Sbjct: 177 GKQEWSKLFTVPIPPLPDL 195

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. Length = 230
>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets Back     alignment and domain information
>gnl|CDD|201368 pfam00646, F-box, F-box domain Back     alignment and domain information
>gnl|CDD|221867 pfam12937, F-box-like, F-box-like Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 381
TIGR01640230 F_box_assoc_1 F-box protein interaction domain. Th 100.0
PF07734164 FBA_1: F-box associated; InterPro: IPR006527 This 99.67
PLN03215373 ascorbic acid mannose pathway regulator 1; Provisi 99.58
PF08268129 FBA_3: F-box associated domain; InterPro: IPR01318 99.51
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 99.37
PHA02713557 hypothetical protein; Provisional 99.35
PHA02713557 hypothetical protein; Provisional 99.33
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 99.29
PHA02790480 Kelch-like protein; Provisional 99.21
PHA03098534 kelch-like protein; Provisional 99.2
PLN02153341 epithiospecifier protein 99.1
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 99.09
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 99.07
PLN02193470 nitrile-specifier protein 98.96
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 98.93
PF1293747 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 98.92
PHA02790480 Kelch-like protein; Provisional 98.89
PLN02153341 epithiospecifier protein 98.81
PLN02193470 nitrile-specifier protein 98.77
PHA03098534 kelch-like protein; Provisional 98.77
PF0064648 F-box: F-box domain; InterPro: IPR001810 The F-box 98.7
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 98.7
smart0025641 FBOX A Receptor for Ubiquitination Targets. 98.65
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 98.64
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 98.51
KOG4693392 consensus Uncharacterized conserved protein, conta 98.05
KOG1230 521 consensus Protein containing repeated kelch motifs 98.0
KOG0379 482 consensus Kelch repeat-containing proteins [Genera 97.87
KOG4693392 consensus Uncharacterized conserved protein, conta 97.76
KOG0379 482 consensus Kelch repeat-containing proteins [Genera 97.74
KOG0281499 consensus Beta-TrCP (transducin repeats containing 97.59
KOG2120419 consensus SCF ubiquitin ligase, Skp2 component [Po 97.07
KOG2997366 consensus F-box protein FBX9 [General function pre 96.62
KOG1230 521 consensus Protein containing repeated kelch motifs 96.46
PF1396450 Kelch_6: Kelch motif 96.44
PF0134447 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is 96.19
KOG0274537 consensus Cdc4 and related F-box and WD-40 protein 95.2
KOG2055514 consensus WD40 repeat protein [General function pr 94.87
PF0764649 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is 94.84
PF02191250 OLF: Olfactomedin-like domain; InterPro: IPR003112 94.7
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 93.74
PF07250243 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP 93.68
smart00284255 OLF Olfactomedin-like domains. 93.58
PF08450246 SGL: SMP-30/Gluconolaconase/LRE-like region; Inter 93.28
KOG4152 830 consensus Host cell transcription factor HCFC1 [Ce 92.84
PF07893342 DUF1668: Protein of unknown function (DUF1668); In 92.42
COG3055381 Uncharacterized protein conserved in bacteria [Fun 92.21
PF1341849 Kelch_4: Galactose oxidase, central domain; PDB: 2 92.01
TIGR02658352 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. 91.93
PF1396450 Kelch_6: Kelch motif 91.56
PF0134447 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is 91.15
TIGR01640230 F_box_assoc_1 F-box protein interaction domain. Th 90.4
smart0061247 Kelch Kelch domain. 88.99
PF07893342 DUF1668: Protein of unknown function (DUF1668); In 87.5
PF02897414 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal 87.01
smart0061247 Kelch Kelch domain. 86.7
PLN02772 398 guanylate kinase 86.61
PF1341849 Kelch_4: Galactose oxidase, central domain; PDB: 2 86.51
PF08450246 SGL: SMP-30/Gluconolaconase/LRE-like region; Inter 86.24
PF06433342 Me-amine-dh_H: Methylamine dehydrogenase heavy cha 86.15
COG3055381 Uncharacterized protein conserved in bacteria [Fun 85.98
COG4257353 Vgb Streptogramin lyase [Defense mechanisms] 85.24
PF05096264 Glu_cyclase_2: Glutamine cyclotransferase; InterPr 83.9
PF07762131 DUF1618: Protein of unknown function (DUF1618); In 83.49
PF1341549 Kelch_3: Galactose oxidase, central domain 82.9
TIGR02658 352 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. 81.38
PRK11138394 outer membrane biogenesis protein BamB; Provisiona 81.02
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 80.94
>TIGR01640 F_box_assoc_1 F-box protein interaction domain Back     alignment and domain information 
Probab=100.00  E-value=1.3e-32  Score=243.58  Aligned_cols=220  Identities=26%  Similarity=0.434  Sum_probs=161.9

Q ss_pred             EcccCcEEEEeeCCCcEEEEccCCcceeeCCCCCCCCCC-ceEEEEEeEECCCCCEEEEEEEEEeecCccceEEEEEEcC
Q 016891          105 IDSCNGLIAFKNDENGIALWNPSTEEHLILPKFWGDLKD-FMVVDGFGYDAVNDDYKVVRLVQLVIGNVGYTEIAVYSLR  183 (381)
Q Consensus       105 ~~s~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~-~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~  183 (381)
                      ++|||||||+... ..++||||+||+++.||+++..... ....++||||+.+++||||++.... .+.....++||+++
T Consensus         1 ~~sCnGLlc~~~~-~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~-~~~~~~~~~Vys~~   78 (230)
T TIGR01640         1 VVPCDGLICFSYG-KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRS-GNRNQSEHQVYTLG   78 (230)
T ss_pred             CcccceEEEEecC-CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeec-CCCCCccEEEEEeC
Confidence            4799999998865 7899999999999999976542111 1125789999999999999997632 11123789999999


Q ss_pred             CCcEEEcccCCCcceecCCCcEEECCeeEEEEeeCCCCCCcCEEEEEECCCCeee-eecCCCCCCCCCceeEEEEEECCe
Q 016891          184 TNSWRRIRVDFPYYILHGWDGTFADGHVHWLVTNNPEDYIENLIIAFNLKSEEFH-EVPLPHLENRNDVLVMFVGNFSGC  262 (381)
Q Consensus       184 t~~W~~~~~~~p~~~~~~~~~v~~nG~lYwl~~~~~~~~~~~~i~~fD~~~e~~~-~i~~P~~~~~~~~~~~~L~~~~G~  262 (381)
                      +++||.+. ..+........+|++||.+||+.....+. ....|++||+.+|+|+ .+++|...... .....|++++|+
T Consensus        79 ~~~Wr~~~-~~~~~~~~~~~~v~~~G~lyw~~~~~~~~-~~~~IvsFDl~~E~f~~~i~~P~~~~~~-~~~~~L~~~~G~  155 (230)
T TIGR01640        79 SNSWRTIE-CSPPHHPLKSRGVCINGVLYYLAYTLKTN-PDYFIVSFDVSSERFKEFIPLPCGNSDS-VDYLSLINYKGK  155 (230)
T ss_pred             CCCccccc-cCCCCccccCCeEEECCEEEEEEEECCCC-CcEEEEEEEcccceEeeeeecCcccccc-ccceEEEEECCE
Confidence            99999988 33322222225999999999999754321 1127999999999999 58888754321 124689999999


Q ss_pred             EEEEEecCCCceEEEEEEC----CceeEEEEec-C-CCC--CeeEEEEEEeCCCEEEEEecccCCccccCCcEEEEEeCC
Q 016891          263 LYFSCLCNYPQPVDIWVLM----GCWTKTFSFP-R-SVG--DYVKALAYSKSGGKVLVDKFEYGEDEDINRWELFWYDLQ  334 (381)
Q Consensus       263 L~~~~~~~~~~~~~iW~l~----~~W~~~~~i~-~-~~~--~~~~~~~~~~~g~~i~l~~~~~~~~~~~~~~~l~~yd~~  334 (381)
                      |+++........++||+|+    .+|+|+++|+ + ..+  ....++++..+|+ |++...     + .....+++||++
T Consensus       156 L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~-I~~~~~-----~-~~~~~~~~y~~~  228 (230)
T TIGR01640       156 LAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGE-IVLCCE-----D-ENPFYIFYYNVG  228 (230)
T ss_pred             EEEEEecCCCCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCE-EEEEeC-----C-CCceEEEEEecc
Confidence            9999987643379999999    5799999998 2 222  1245889988888 777730     0 113349999999


Q ss_pred             CC
Q 016891          335 NQ  336 (381)
Q Consensus       335 t~  336 (381)
                      +|
T Consensus       229 ~~  230 (230)
T TIGR01640       229 EN  230 (230)
T ss_pred             CC
Confidence            86

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants Back     alignment and domain information
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional Back     alignment and domain information
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>smart00256 FBOX A Receptor for Ubiquitination Targets Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] Back     alignment and domain information
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2997 consensus F-box protein FBX9 [General function prediction only] Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] Back     alignment and domain information
>KOG2055 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes Back     alignment and domain information
>smart00284 OLF Olfactomedin-like domains Back     alignment and domain information
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species Back     alignment and domain information
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription] Back     alignment and domain information
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function Back     alignment and domain information
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B Back     alignment and domain information
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>TIGR01640 F_box_assoc_1 F-box protein interaction domain Back     alignment and domain information
>smart00612 Kelch Kelch domain Back     alignment and domain information
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function Back     alignment and domain information
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>smart00612 Kelch Kelch domain Back     alignment and domain information
>PLN02772 guanylate kinase Back     alignment and domain information
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B Back     alignment and domain information
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species Back     alignment and domain information
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 Back     alignment and domain information
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>COG4257 Vgb Streptogramin lyase [Defense mechanisms] Back     alignment and domain information
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 Back     alignment and domain information
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa Back     alignment and domain information
>PF13415 Kelch_3: Galactose oxidase, central domain Back     alignment and domain information
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain Back     alignment and domain information
>PRK11138 outer membrane biogenesis protein BamB; Provisional Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query381
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-07
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 50.6 bits (120), Expect = 6e-07
 Identities = 55/382 (14%), Positives = 109/382 (28%), Gaps = 121/382 (31%)

Query: 11  DILSRLSVKCLLRFKC--VSKSFCSLIDSQEFIKIHLKRSIETNSNLSLILSGTPAPILD 68
           DILS      +  F C  V     S++  +E   I + +   + +            +  
Sbjct: 20  DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR----------LFW 69

Query: 69  SSRYWGGKIFSAGLDSLNLGVELDHPFKNCKGRTPIIDSCNGLIAFKNDENGIALWNPST 128
           +      ++    ++ +   + +++ F      +PI                     PS 
Sbjct: 70  TLLSKQEEMVQKFVEEV---LRINYKFL----MSPIKTEQRQ---------------PSM 107

Query: 129 EEHLILP---KFWGDLKDFMVVDGFGYDAVNDDYKVVRLVQLVIGNVGYTEI--AVYSLR 183
              + +    + + D + F              Y V RL         Y ++  A+  LR
Sbjct: 108 MTRMYIEQRDRLYNDNQVF------------AKYNVSRLQP-------YLKLRQALLELR 148

Query: 184 TNSWRRIRVDFPYYILHGWDGT-----------------FADGHVHWL---VTNNPEDYI 223
                         ++ G  G+                   D  + WL     N+PE  +
Sbjct: 149 PA---------KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199

Query: 224 ENL-----IIAFNLKSEEFHEVPLPH-LENRNDVLVMFVGNFSGCLYFSCLCNYPQPV-- 275
           E L      I  N  S   H   +   + +    L           Y +CL      V  
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL---LKSKPYENCLL-----VLL 251

Query: 276 DIW---VL----MGCWTKTF--SFPRSVGDYVKALAYSKSGGKVLVDKFEYGEDEDINRW 326
           ++          + C  K    +  + V D++ A   +     + +D        D  + 
Sbjct: 252 NVQNAKAWNAFNLSC--KILLTTRFKQVTDFLSAATTT----HISLDHHSMTLTPDEVK- 304

Query: 327 ELF--WYDLQNQGAAADQVTIH 346
            L   + D + Q    + +T +
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTN 326

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query381
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 99.42
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 99.41
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 99.4
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 99.39
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 99.38
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 99.37
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 99.34
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 99.3
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 99.28
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 99.26
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 99.24
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 99.24
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 99.09
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 99.05
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 99.05
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 99.0
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 98.96
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 98.93
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 98.84
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 98.81
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 98.41
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 98.38
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 98.24
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 97.91
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 97.36
2p1m_B 594 Transport inhibitor response 1 protein; F-BOX, leu 96.73
3ogk_B 592 Coronatine-insensitive protein 1; leucine rich rep 96.17
3mbr_X243 Glutamine cyclotransferase; beta-propeller; 1.44A 95.87
1l0q_A 391 Surface layer protein; SLP, S-layer, 7-bladed beta 95.7
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 95.59
3nol_A262 Glutamine cyclotransferase; beta-propeller, glutam 95.02
3ei3_B383 DNA damage-binding protein 2; UV-damage, DDB, nucl 95.02
2iwa_A266 Glutamine cyclotransferase; pyroglutamate, acyltra 94.61
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 93.96
3nok_A268 Glutaminyl cyclase; beta-propeller, cyclotransfera 93.69
1l0q_A391 Surface layer protein; SLP, S-layer, 7-bladed beta 93.28
3g4e_A297 Regucalcin; six bladed beta-propeller, gluconolcat 93.19
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 93.15
3hfq_A 347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 93.14
3scy_A361 Hypothetical bacterial 6-phosphogluconolactonase; 93.05
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 92.63
4e54_B435 DNA damage-binding protein 2; beta barrel, double 92.4
1ri6_A343 Putative isomerase YBHE; 7-bladed propeller, enzym 92.4
3bws_A433 Protein LP49; two-domain, immunoglobulin-like, 7-b 92.35
3jro_A 753 Fusion protein of protein transport protein SEC13 92.24
1npe_A267 Nidogen, entactin; glycoprotein, basement membrane 92.1
2z2n_A299 Virginiamycin B lyase; seven-bladed beta-propeller 92.05
1q7f_A286 NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL 91.74
3hfq_A347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 91.64
3sjl_D386 Methylamine dehydrogenase heavy chain; MAUG, C-hem 91.41
3no2_A276 Uncharacterized protein; six-bladed beta-propeller 91.31
4gga_A420 P55CDC, cell division cycle protein 20 homolog; ce 91.08
3bws_A433 Protein LP49; two-domain, immunoglobulin-like, 7-b 90.57
3dwl_C377 Actin-related protein 2/3 complex subunit 1; prope 90.36
3q7m_A376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 89.89
1yfq_A342 Cell cycle arrest protein BUB3; WD repeat WD40 rep 89.03
2mad_H373 Methylamine dehydrogenase (heavy subunit); oxidore 88.44
2hqs_A415 Protein TOLB; TOLB, PAL, TOL, transport protein-li 88.42
3m0c_C 791 LDL receptor, low-density lipoprotein receptor; pr 88.4
3u4y_A331 Uncharacterized protein; structural genomics, PSI- 88.23
2aq5_A402 Coronin-1A; WD40 repeat, 7-bladed beta-propeller, 87.42
3q7m_A376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 87.27
3jrp_A379 Fusion protein of protein transport protein SEC13 87.05
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 86.21
4a11_B408 DNA excision repair protein ERCC-8; DNA binding pr 85.69
3v65_B386 Low-density lipoprotein receptor-related protein; 84.83
3vgz_A353 Uncharacterized protein YNCE; beta-propeller, prot 84.71
1rwi_B270 Serine/threonine-protein kinase PKND; beta propell 84.67
1k8k_C372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 84.48
3zwl_B369 Eukaryotic translation initiation factor 3 subuni; 84.47
2dg1_A 333 DRP35, lactonase; beta propeller, hydrolase; 1.72A 83.99
3v9f_A 781 Two-component system sensor histidine kinase/RESP 83.97
3e5z_A296 Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco 83.73
1ri6_A343 Putative isomerase YBHE; 7-bladed propeller, enzym 83.66
2ojh_A297 Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 83.16
1ijq_A316 LDL receptor, low-density lipoprotein receptor; be 82.54
3fvz_A329 Peptidyl-glycine alpha-amidating monooxygenase; be 81.92
2hqs_A415 Protein TOLB; TOLB, PAL, TOL, transport protein-li 81.64
1k8k_C 372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 81.25
3c75_H426 MADH, methylamine dehydrogenase heavy chain; coppe 81.13
1jmx_B 349 Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 80.91
3iz6_a380 40S ribosomal protein RACK1 (RACK1); eukaryotic ri 80.74
4g56_B357 MGC81050 protein; protein arginine methyltransfera 80.69
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 80.49
4g56_B357 MGC81050 protein; protein arginine methyltransfera 80.38
1npe_A267 Nidogen, entactin; glycoprotein, basement membrane 80.24
1pjx_A314 Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries 80.1
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
Probab=99.42  E-value=9.1e-11  Score=107.43  Aligned_cols=220  Identities=13%  Similarity=0.110  Sum_probs=136.6

Q ss_pred             cEEEEccCCcceeeCCCCCCCCCCceEEEEEeEECCCCCEEEEEEEEEee-cCcc-ceEEEEEEcCCCcEEEcccCCCcc
Q 016891          120 GIALWNPSTEEHLILPKFWGDLKDFMVVDGFGYDAVNDDYKVVRLVQLVI-GNVG-YTEIAVYSLRTNSWRRIRVDFPYY  197 (381)
Q Consensus       120 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~-~~~~-~~~~~vyss~t~~W~~~~~~~p~~  197 (381)
                      .++++||.|++|..+|+.+...... ..+.+      ++ +++.+..... .... ...+++|+..+++|+.++ .+|..
T Consensus        68 ~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~------~~-~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~-~~p~~  138 (315)
T 4asc_A           68 YFLQFDHLDSEWLGMPPLPSPRCLF-GLGEA------LN-SIYVVGGREIKDGERCLDSVMCYDRLSFKWGESD-PLPYV  138 (315)
T ss_dssp             EEEEEETTTTEEEECCCBSSCEESC-EEEEE------TT-EEEEECCEESSTTCCBCCCEEEEETTTTEEEECC-CCSSC
T ss_pred             ceEEecCCCCeEEECCCCCcchhce-eEEEE------CC-EEEEEeCCcCCCCCcccceEEEECCCCCcEeECC-CCCCc
Confidence            3889999999999999876433221 12212      12 5555543211 1122 278999999999999998 66543


Q ss_pred             eecCCCcEEECCeeEEEEeeCCCCCCcCEEEEEECCCCeeeee-cCCCCCCCCCceeEEEEEECCeEEEEEecCCCc-eE
Q 016891          198 ILHGWDGTFADGHVHWLVTNNPEDYIENLIIAFNLKSEEFHEV-PLPHLENRNDVLVMFVGNFSGCLYFSCLCNYPQ-PV  275 (381)
Q Consensus       198 ~~~~~~~v~~nG~lYwl~~~~~~~~~~~~i~~fD~~~e~~~~i-~~P~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~-~~  275 (381)
                      .. ....+.++|.||.+++..........+..||+.+++|+.+ ++|...     .....+..+|+|+++....... .-
T Consensus       139 r~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r-----~~~~~~~~~~~iyv~GG~~~~~~~~  212 (315)
T 4asc_A          139 VY-GHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTAR-----SLFGATVHDGRIIVAAGVTDTGLTS  212 (315)
T ss_dssp             CB-SCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCC-----BSCEEEEETTEEEEEEEECSSSEEE
T ss_pred             cc-ceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCch-----hceEEEEECCEEEEEeccCCCCccc
Confidence            21 1266789999999998743333334799999999999988 455432     3346777899999999876432 33


Q ss_pred             EEEEEC---CceeEEEEecCCCCCeeEEEEEEeCCCEEEEEecccCCccc---------cCCcEEEEEeCCCCceeeeeE
Q 016891          276 DIWVLM---GCWTKTFSFPRSVGDYVKALAYSKSGGKVLVDKFEYGEDED---------INRWELFWYDLQNQGAAADQV  343 (381)
Q Consensus       276 ~iW~l~---~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~---------~~~~~l~~yd~~t~~~~~~~v  343 (381)
                      ++|.++   .+|..+..++..  .......+. ++. |++.+   |.+..         .....+..||+++++|  +.+
T Consensus       213 ~~~~yd~~~~~W~~~~~~p~~--r~~~~~~~~-~~~-l~v~G---G~~~~~~~~~~~~~~~~~~v~~yd~~~~~W--~~~  283 (315)
T 4asc_A          213 SAEVYSITDNKWAPFEAFPQE--RSSLSLVSL-VGT-LYAIG---GFATLETESGELVPTELNDIWRYNEEEKKW--EGV  283 (315)
T ss_dssp             EEEEEETTTTEEEEECCCSSC--CBSCEEEEE-TTE-EEEEE---EEEEEECTTSCEEEEEEEEEEEEETTTTEE--EEE
T ss_pred             eEEEEECCCCeEEECCCCCCc--ccceeEEEE-CCE-EEEEC---CccccCcCCccccccccCcEEEecCCCChh--hhh
Confidence            677776   899987655521  112222223 454 77663   11000         0123589999999999  888


Q ss_pred             EEecCCCCceeEEEEeeceecC
Q 016891          344 TIHGVPQGCRDTIVCVDSLVSL  365 (381)
Q Consensus       344 ~~~~~~~~~~~~~~y~~sl~~~  365 (381)
                       ....... +.+..+...|..+
T Consensus       284 -~~~~r~~-~~~~~~~~~l~v~  303 (315)
T 4asc_A          284 -LREIAYA-AGATFLPVRLNVL  303 (315)
T ss_dssp             -ESCSSCC-SSCEEEEEEECGG
T ss_pred             -ccCCcCc-cceEEeCCEEEEE
Confidence             2221222 3455555555444
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A Back     alignment and structure
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Back     alignment and structure
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Back     alignment and structure
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 Back     alignment and structure
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Back     alignment and structure
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Back     alignment and structure
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... Back     alignment and structure
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} Back     alignment and structure
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A Back     alignment and structure
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Back     alignment and structure
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Back     alignment and structure
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* Back     alignment and structure
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A Back     alignment and structure
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Back     alignment and structure
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Back     alignment and structure
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Back     alignment and structure
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Back     alignment and structure
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Back     alignment and structure
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Back     alignment and structure
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A Back     alignment and structure
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Back     alignment and structure
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 Back     alignment and structure
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} Back     alignment and structure
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Back     alignment and structure
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Back     alignment and structure
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} Back     alignment and structure
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* Back     alignment and structure
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Back     alignment and structure
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 381
d1fs1a141 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [ 1e-05
d2ovrb1102 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing 4e-04
d1p22a1118 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b 0.002
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41 Back     information, alignment and structure

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (94), Expect = 1e-05
 Identities = 10/37 (27%), Positives = 17/37 (45%)

Query: 4  LPTDINIDILSRLSVKCLLRFKCVSKSFCSLIDSQEF 40
          LP ++ + I S L +  LL+   V K +  L   +  
Sbjct: 4  LPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 40
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query381
d1fs1a141 Skp2 {Human (Homo sapiens) [TaxId: 9606]} 99.19
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 98.81
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 98.74
d2ovrb1102 F-box/WD repeat-containing protein 7, FBXW7 {Human 98.68
d1nexb1100 Cdc4 F-box and linker domains {Baker's yeast (Sacc 98.53
d1p22a1118 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 98.21
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 97.97
d1k3ia3 387 Galactose oxidase, central domain {Fungi (Fusarium 97.96
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 92.14
d1q7fa_279 Brain tumor cg10719-pa {Fruit fly (Drosophila mela 91.79
d2ghsa1295 Regucalcin {Agrobacterium tumefaciens [TaxId: 358] 90.59
d2ghsa1 295 Regucalcin {Agrobacterium tumefaciens [TaxId: 358] 89.71
d2dg1a1319 Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 88.12
d1qksa2 432 C-terminal (heme d1) domain of cytochrome cd1-nitr 86.74
d1k8kc_ 371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 84.75
d2p4oa1 302 Hypothetical protein All0351 homologue {Nostoc pun 84.51
d1k32a3 360 Tricorn protease domain 2 {Archaeon Thermoplasma a 83.85
d2dg1a1 319 Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 82.8
d1l0qa2301 Surface layer protein {Archaeon Methanosarcina maz 82.14
d1l0qa2 301 Surface layer protein {Archaeon Methanosarcina maz 81.01
d1k8kc_ 371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 80.44
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 80.17
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=1.2e-12  Score=79.15  Aligned_cols=39  Identities=26%  Similarity=0.444  Sum_probs=36.8

Q ss_pred             CCCcHHHHHHHHccCCccceeEEEeehhhhhhhccChhH
Q 016891            2 AGLPTDINIDILSRLSVKCLLRFKCVSKSFCSLIDSQEF   40 (381)
Q Consensus         2 ~~LPdDll~eIL~rLP~~~l~r~r~VcK~W~~li~~p~F   40 (381)
                      +.||+|++.+||++||++++.|+++|||+|+++++++.+
T Consensus         2 ~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~l   40 (41)
T d1fs1a1           2 DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   40 (41)
T ss_dssp             CSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred             CcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Confidence            579999999999999999999999999999999998864
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Back     information, alignment and structure
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Back     information, alignment and structure
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure