Citrus Sinensis ID: 016902

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380
Protein Sequence
MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRHTQ
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHcccHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHccccEEEccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccHHcccccccccccccccHHcccHHcccccccccccccccccccccccEEEccccccccccccccccHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccEEEccccccHHHHHHHHHHHHHHHcccccccccccEEEEcccccHccccccccccccccEHHcHEEEEEccccccccccEEEEEHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mgsreikspeslqetpatssshqrkKLSVYFIESDNrrmalgrgytggttpvnvhgkpiadlsktggWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMkvfmpnqdncdRISQllgscepaksWQMLYLYTVLYITgfgaagirpcvssfgadqfdersKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMlffigtplyrhrlpggsplTRVAQVLVAAFRKRHaafssseliglyevpgkhsaikgsgkiahtddfRCLDKAALELkedvinpspwklctvTQVEEVKTLVRHTQ
Flexible Loop (DISEMBL)
mgsreikspeslqetpatssshqrkkLSVYFIESDNRRMALGRgytggttpvnvhgkpiadlsktGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELkedvinpspwklctvtqVEEVKTLVRHTQ
Low Complexity Region (SEG)
MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRHTQ
Disordered region (IsUnstruct)
***************************SVYFIESDNRRMALGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTL*****
Disordered Region (DISOPRED)
*************************************************TPVNVHGKPIA****TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDN**************KSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS*DYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLY******************DDFRCLDKAAL*************LCTVTQVEEVKTLVRHTQ
Disordered Region (DISEMBL)
************************KKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRHTQ
Disordered Region (DISPRO)
***************************S*****************TGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKH***KGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRHT*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRHTQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	380	2.2.26 [Sep-21-2011]
Q9LYR6	624	Probable peptide/nitrate	yes	no	0.992	0.604	0.830	0.0
Q9M390	570	Peptide transporter PTR1	no	no	0.828	0.552	0.448	1e-77
Q93Z20	590	Probable peptide/nitrate	no	no	0.884	0.569	0.426	8e-73
P46032	585	Peptide transporter PTR2	no	no	0.834	0.541	0.434	7e-72
Q9LFB8	570	Peptide transporter PTR5	no	no	0.828	0.552	0.431	1e-70
Q84WG0	545	Probable peptide/nitrate	no	no	0.742	0.517	0.388	2e-60
Q9FNL7	582	Peptide transporter PTR3-	no	no	0.857	0.560	0.362	3e-56
Q9FNL8	586	Peptide transporter PTR3-	no	no	0.857	0.556	0.362	8e-56
Q9SZY4	577	Nitrate transporter 1.4 O	no	no	0.821	0.540	0.399	1e-55
P0CI03	575	Putative peptide/nitrate	no	no	0.792	0.523	0.383	5e-55

>sp|Q9LYR6|PTR49_ARATH Probable peptide/nitrate transporter At5g13400 OS=Arabidopsis thaliana GN=At5g13400 PE=2 SV=1

 Score =  657 bits (1696), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/377 (83%), Positives = 342/377 (90%)

Query: 1   MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIA 60
           M + EIKSP S+ ETP +SS H RK+LSV+FIESDNRR+ALGRGYTGGTTPVN+HGKPIA
Sbjct: 1   MVASEIKSPVSVPETPGSSSVHHRKQLSVFFIESDNRRLALGRGYTGGTTPVNIHGKPIA 60

Query: 61  DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQA 120
           +LSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F  SSNAVNNFLGISQA
Sbjct: 61  NLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFESSSNAVNNFLGISQA 120

Query: 121 SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCE 180
           SSVLGGFLADAYLGRYWTIAIFTT+YL GL GITL A++K+F+P+Q NC ++S LLG+CE
Sbjct: 121 SSVLGGFLADAYLGRYWTIAIFTTMYLVGLIGITLGASLKMFVPDQSNCGQLSLLLGNCE 180

Query: 181 PAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 240
            AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE+SKDYKTHLDRFFNFFYLSVT+
Sbjct: 181 EAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDEKSKDYKTHLDRFFNFFYLSVTL 240

Query: 241 GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVL 300
           GAI+AFTLVVY+QME GWG AFG LA+AMGISN LFF GTPLYRHRLPGGSPLTRVAQVL
Sbjct: 241 GAIIAFTLVVYVQMELGWGMAFGTLAVAMGISNALFFAGTPLYRHRLPGGSPLTRVAQVL 300

Query: 301 VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSP 360
           VAAFRKR+AAF+SSE IGLYEVPG  SAI GS KI H++DF  LDKAALELKED + PSP
Sbjct: 301 VAAFRKRNAAFTSSEFIGLYEVPGLKSAINGSRKIPHSNDFIWLDKAALELKEDGLEPSP 360

Query: 361 WKLCTVTQVEEVKTLVR 377
           WKLCTVTQVEEVK L+R
Sbjct: 361 WKLCTVTQVEEVKILIR 377

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1

 Score =  290 bits (742), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 147/328 (44%), Positives = 206/328 (62%), Gaps = 13/328 (3%)

Query: 52  VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
           V++H  P A+  KTG W A  FI GNE  ER+AY+G+  N+V ++   +++  A ++N V
Sbjct: 13  VDIHKNP-ANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATAANNV 71

Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
            N+ G    + ++G F+ADAYLGRYWTIA F  IY++G+T +TL A++    P   N D 
Sbjct: 72  TNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKPGNCNAD- 130

Query: 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
                 +C P  S Q    +  LY+   G  GI+PCVSSFGADQFDE  ++ K     FF
Sbjct: 131 ------TCHPNSS-QTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSSFF 183

Query: 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
           N+FY S+ VGA++A T++V+IQM  GWG  FG   +AM I+   FF G+  YR + PGGS
Sbjct: 184 NWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGGS 243

Query: 292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
           PLTR+ QV+VAAFRK        + + L+E     S IKGS K+ HTD+ +  DKAA+E 
Sbjct: 244 PLTRIFQVIVAAFRKISVKVPEDKSL-LFETADDESNIKGSRKLVHTDNLKFFDKAAVES 302

Query: 352 KEDVINP---SPWKLCTVTQVEEVKTLV 376
           + D I     +PW+LC+VTQVEE+K+++
Sbjct: 303 QSDSIKDGEVNPWRLCSVTQVEELKSII 330

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93Z20|PTR17_ARATH Probable peptide/nitrate transporter At1g62200 OS=Arabidopsis thaliana GN=At1g62200 PE=2 SV=1

 Score =  274 bits (701), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 149/349 (42%), Positives = 208/349 (59%), Gaps = 13/349 (3%)

Query: 33  ESDNRRMALGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNM 92
           E +N    L      G+  ++++G P +   KTG W A  FI GNE  ER+AY+G++ N+
Sbjct: 24  EVNNHLTGLSSTAEDGS--IDIYGNPPSK-KKTGNWKACPFILGNECCERLAYYGIAKNL 80

Query: 93  VTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152
           +T+    +H+S   +++ V  + G    + ++G  +AD+Y GRYWTIA F+ IY  G+  
Sbjct: 81  ITYYTSELHESNVSAASDVMIWQGTCYITPLIGAVIADSYWGRYWTIASFSAIYFIGMAL 140

Query: 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFG 212
           +TL A++ V  P              C PA + Q    +T LY+   G  GI+PCVSSFG
Sbjct: 141 LTLSASLPVLKPAA----CAGVAAALCSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFG 196

Query: 213 ADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS 272
           ADQFD+     +     FFN+FY S+ +G+ ++ TL+V++Q   GWG  F    + MG+S
Sbjct: 197 ADQFDDTDPRERVRKASFFNWFYFSINIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVS 256

Query: 273 NMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGS 332
              FFIGTPLYR + PGGSP+TRV QVLVAA+RK        ++  LYE   K+S I GS
Sbjct: 257 IASFFIGTPLYRFQKPGGSPITRVCQVLVAAYRKLKLNL-PEDISFLYETREKNSMIAGS 315

Query: 333 GKIAHTDDFRCLDKAAL----ELKEDVINPSPWKLCTVTQVEEVKTLVR 377
            KI HTD ++ LDKAA+    E K    + +PWKLCTVTQVEEVKTL+R
Sbjct: 316 RKIQHTDGYKFLDKAAVISEYESKSGAFS-NPWKLCTVTQVEEVKTLIR 363

Arabidopsis thaliana (taxid: 3702)

>sp|P46032|PTR2_ARATH Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1

 Score =  271 bits (692), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 143/329 (43%), Positives = 201/329 (61%), Gaps = 12/329 (3%)

Query: 52  VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
           V+ +G P     KTG W A  FI GNE  ER+AY+G++ N++T++   +H+    ++  V
Sbjct: 30  VDFNGNPPLK-EKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAATNV 88

Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
             + G    + ++G  LADAY GRYWTIA F+ IY  G++ +TL A++    P +  C  
Sbjct: 89  TTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAE--C-- 144

Query: 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
           I     S  PA   Q    +  LY+   G  GI+PCVSSFGADQFD+     +     FF
Sbjct: 145 IGDFCPSATPA---QYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFF 201

Query: 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
           N+FY S+ +GA+V+ +L+V+IQ   GWG  FG   + MG++   FF GTPLYR + PGGS
Sbjct: 202 NWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGS 261

Query: 292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
           P+TR++QV+VA+FRK          + LYE   K+SAI GS KI HTDD + LDKAA+  
Sbjct: 262 PITRISQVVVASFRKSSVKVPEDATL-LYETQDKNSAIAGSRKIEHTDDCQYLDKAAVIS 320

Query: 352 KEDVIN---PSPWKLCTVTQVEEVKTLVR 377
           +E+  +    + W+LCTVTQVEE+K L+R
Sbjct: 321 EEESKSGDYSNSWRLCTVTQVEELKILIR 349

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity, low capacity transporter. Can also transport histidine.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1

 Score =  267 bits (682), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 142/329 (43%), Positives = 198/329 (60%), Gaps = 14/329 (4%)

Query: 52  VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
           +++H KP A+ +KTG W A  FI G E  ER+AY+G+S N++ ++   M+     +S +V
Sbjct: 14  LDIHKKP-ANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMENVSASKSV 72

Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
           +N+ G   A+ ++G F+ADAYLGRYWTIA F  IY+AG+T +T+ A++    P    C  
Sbjct: 73  SNWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPGLTPT---CS- 128

Query: 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
                G    A + Q    +  LY+   G  GI+PCVSSFGADQFD+  +  K     FF
Sbjct: 129 -----GETCHATAGQTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKESKSSFF 183

Query: 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
           N+FY  + VGA++A +++V+IQM  GWG   G   +AM I+ + FF G+  YR + PGGS
Sbjct: 184 NWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQKPGGS 243

Query: 292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
           PLTR+ QV+VA+ RK        E + LYE     S+I GS K+ HT      DKAA+E 
Sbjct: 244 PLTRMLQVIVASCRKSKVKIPEDESL-LYENQDAESSIIGSRKLEHTKILTFFDKAAVET 302

Query: 352 KED---VINPSPWKLCTVTQVEEVKTLVR 377
           + D       S WKLCTVTQVEE+K L+R
Sbjct: 303 ESDNKGAAKSSSWKLCTVTQVEELKALIR 331

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter. Involved in the uptake of peptides during pollen germination and tube growth.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84WG0|PTR26_ARATH Probable peptide/nitrate transporter At2g02020 OS=Arabidopsis thaliana GN=At2g02020 PE=2 SV=2

 Score =  233 bits (593), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 127/327 (38%), Positives = 182/327 (55%), Gaps = 45/327 (13%)

Query: 52  VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
           +++HG P      TG W A  FIF NE  ER+AY+G++ N++T+    +H++   ++  V
Sbjct: 31  IDIHGNPPLK-QTTGNWKACPFIFANECCERLAYYGIAKNLITYFTNELHETNVSAARHV 89

Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
             + G    + ++G  +ADAY GRYWTIA F+ IY  G+  +TL A++    P       
Sbjct: 90  MTWQGTCYITPLIGALIADAYWGRYWTIACFSAIYFTGMVALTLSASVPGLKP------- 142

Query: 172 ISQLLGS-CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230
            ++ +GS C PA   Q   L++ LY+   G  GI+PCVSSFGADQFD+     +     F
Sbjct: 143 -AECIGSLCPPATMVQSTVLFSGLYLIALGTGGIKPCVSSFGADQFDKTDPSERVRKASF 201

Query: 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGG 290
           FN+FY ++ +GA V+ T++V+IQ  +GW   F    + MG++ M FF GTPLYR + P G
Sbjct: 202 FNWFYFTINIGAFVSSTVLVWIQENYGWELGFLIPTVFMGLATMSFFFGTPLYRFQKPRG 261

Query: 291 SPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALE 350
           SP+T V QVLVAA+RK +            +VP + S  +G                   
Sbjct: 262 SPITSVCQVLVAAYRKSN-----------LKVP-EDSTDEGDA----------------- 292

Query: 351 LKEDVINPSPWKLCTVTQVEEVKTLVR 377
                 N +PWKLCTVTQVEEVK L+R
Sbjct: 293 ------NTNPWKLCTVTQVEEVKILLR 313

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNL7|PTR3_ARATH Peptide transporter PTR3-A OS=Arabidopsis thaliana GN=PTR3-A PE=2 SV=1

 Score =  219 bits (557), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 122/337 (36%), Positives = 185/337 (54%), Gaps = 11/337 (3%)

Query: 41  LGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM 100
           +G  YT   T V++ G P+   S  G W A  F+   E+ ERMAY+G+S N+  +M   +
Sbjct: 6   VGDDYTKDGT-VDLQGNPVRR-SIRGRWKACSFVVVYEVFERMAYYGISSNLFIYMTTKL 63

Query: 101 HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMK 160
           H+    SSN V N++G S  + +LG ++ DA LGRY T  I   IY +G+  +TL  T+ 
Sbjct: 64  HQGTVKSSNNVTNWVGTSWLTPILGAYVGDALLGRYITFVISCAIYFSGMMVLTLSVTIP 123

Query: 161 VFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220
              P + +   +     +CE A   Q+   +  LY    G  G +P +S+ GADQFD   
Sbjct: 124 GIKPPECSTTNVE----NCEKASVLQLAVFFGALYTLAIGTGGTKPNISTIGADQFDVFD 179

Query: 221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280
              KT    FFN++  S+  G + A T++VY+Q   GW   +G   + + IS  +F +GT
Sbjct: 180 PKEKTQKLSFFNWWMFSIFFGTLFANTVLVYVQDNVGWTLGYGLPTLGLAISITIFLLGT 239

Query: 281 PLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDD 340
           P YRH+LP GSP T++A+V+VA+FRK +A   + ++   +E+P      KG+  I  T  
Sbjct: 240 PFYRHKLPTGSPFTKMARVIVASFRKANAPM-THDITSFHELPSLEYERKGAFPIHPTPS 298

Query: 341 FRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVR 377
            R LD+A+L+   +      W LCT T+VEE K ++R
Sbjct: 299 LRFLDRASLKTGTN----HKWNLCTTTEVEETKQMLR 331

Peptide transporter involved in stress tolerance in seeds during germination and in defense against virulent bacterial pathogens.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNL8|PTR4_ARATH Peptide transporter PTR3-B OS=Arabidopsis thaliana GN=PTR3-B PE=2 SV=1

 Score =  218 bits (554), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 122/337 (36%), Positives = 186/337 (55%), Gaps = 11/337 (3%)

Query: 41  LGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM 100
           +G  YT   T V++ G  +   S+TG W A  F+   E+ ERMAY+G+S N+V +M   +
Sbjct: 6   VGDDYTKDGT-VDLRGNRVRR-SQTGRWKACSFVVVYEVFERMAYYGISSNLVIYMTTKL 63

Query: 101 HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMK 160
           H+    SSN V N++G S  + +LG ++ADA+ GRY T  I + IYL G+  +TL  ++ 
Sbjct: 64  HQGTVKSSNNVTNWVGTSWLTPILGAYVADAHFGRYITFVISSAIYLLGMALLTLSVSLP 123

Query: 161 VFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220
              P + +   +     +CE A   Q+   +  LY    G  G +P +S+ GADQFDE  
Sbjct: 124 GLKPPKCSTANVE----NCEKASVIQLAVFFGALYTLAIGTGGTKPNISTIGADQFDEFD 179

Query: 221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280
              K H   FFN++  S+  G   A T++VY+Q   GW   +G   + +  S  +F +GT
Sbjct: 180 PKDKIHKHSFFNWWMFSIFFGTFFATTVLVYVQDNVGWAIGYGLSTLGLAFSIFIFLLGT 239

Query: 281 PLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDD 340
            LYRH+LP GSP T++A+V+VA+ RK     SS      YE+P    A K +  I  T  
Sbjct: 240 RLYRHKLPMGSPFTKMARVIVASLRKAREPMSSDS-TRFYELPPMEYASKRAFPIHSTSS 298

Query: 341 FRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVR 377
            R L++A+L+      +   W+LCT+T+VEE K +++
Sbjct: 299 LRFLNRASLKTG----STHKWRLCTITEVEETKQMLK 331

Peptide transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZY4|PTR27_ARATH Nitrate transporter 1.4 OS=Arabidopsis thaliana GN=NRT1.4 PE=1 SV=1

 Score =  217 bits (552), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 133/333 (39%), Positives = 196/333 (58%), Gaps = 21/333 (6%)

Query: 52  VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
           V+  G+P AD SKTGGWI A  I G E+ ER++  G++VN+VT++   MH   + S+N V
Sbjct: 13  VDYKGRP-ADKSKTGGWITAALILGIEVVERLSTMGIAVNLVTYLMETMHLPSSTSANIV 71

Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
            +F+G S    +LGGFLAD++LGR+ TI IF+TI   G   + +   +    P    C  
Sbjct: 72  TDFMGTSFLLCLLGGFLADSFLGRFKTIGIFSTIQALGTGALAVATKLPELRP--PTCHH 129

Query: 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
                 +C PA ++QM  LY  LY+   G  G++  +S FG+DQFD++    K H+  FF
Sbjct: 130 GE----ACIPATAFQMTILYVSLYLIALGTGGLKSSISGFGSDQFDDKDPKEKAHMAFFF 185

Query: 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
           N F+  +++G ++A T++VY+Q E G   A+G   ++M I+ ++F  GT  YR++   GS
Sbjct: 186 NRFFFFISMGTLLAVTVLVYMQDEVGRSWAYGICTVSMAIAIVIFLCGTKRYRYKKSQGS 245

Query: 292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
           P+ ++ QV+ AAFRKR      S ++ LYE       I    +I HTD F  LDKAA+  
Sbjct: 246 PVVQIFQVIAAAFRKRKMELPQS-IVYLYE--DNPEGI----RIEHTDQFHLLDKAAIVA 298

Query: 352 KED-------VINPSPWKLCTVTQVEEVKTLVR 377
           + D       V  P+PWKL +VT+VEEVK +VR
Sbjct: 299 EGDFEQTLDGVAIPNPWKLSSVTKVEEVKMMVR 331

Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport.

Arabidopsis thaliana (taxid: 3702)

>sp|P0CI03|PTR28_ARATH Putative peptide/nitrate transporter At2g37900 OS=Arabidopsis thaliana GN=At2g37900 PE=2 SV=1

 Score =  215 bits (547), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 122/318 (38%), Positives = 186/318 (58%), Gaps = 17/318 (5%)

Query: 63  SKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASS 122
           ++TG W AALFI   E +ER++YFGL+ N+V ++  ++++    +   VN + G++    
Sbjct: 37  ARTGAWRAALFIIAIEFSERLSYFGLATNLVVYLTTILNQDLKMAIRNVNYWSGVTTLMP 96

Query: 123 VLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPA 182
           +LGGF+ADAYLGRY T+ + TTIYL GL    +  TM  F+P    C +        EP 
Sbjct: 97  LLGGFIADAYLGRYATVLVATTIYLMGL----VLLTMSWFIPGLKPCHQEV----CVEPR 148

Query: 183 KSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA 242
           K+ ++ + +  +Y+   G  G +P + SFGADQFD+   + +     FFN++ +S+  G 
Sbjct: 149 KAHEVAF-FIAIYLISIGTGGHKPSLESFGADQFDDDHVEERKMKMSFFNWWNVSLCAGI 207

Query: 243 IVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVA 302
           + A T V YI+   GWG A   L + M IS ++FFIG P YR+R P GSPLT + QV VA
Sbjct: 208 LTAVTAVAYIEDRVGWGVAGIILTVVMAISLIIFFIGKPFYRYRTPSGSPLTPILQVFVA 267

Query: 303 AFRKRHAAFSSSELIGLYEVPGKHSAIKGSGK-IAHTDDFRCLDKAALELKEDVI---NP 358
           A  KR+  + S   + L+EV         SG+ + HT+  + LDKAA+   ++ +     
Sbjct: 268 AIAKRNLPYPSDPSL-LHEVSKTEFT---SGRLLCHTEHLKFLDKAAIIEDKNPLALEKQ 323

Query: 359 SPWKLCTVTQVEEVKTLV 376
           SPW+L T+T+VEE K ++
Sbjct: 324 SPWRLLTLTKVEETKLII 341

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	380
224053581	638	predicted protein [Populus trichocarpa]	0.992	0.590	0.850	0.0
296085541	606	unnamed protein product [Vitis vinifera]	0.992	0.622	0.824	0.0
225425292	640	PREDICTED: probable peptide/nitrate tran	0.992	0.589	0.824	0.0
15240621	624	putative peptide/nitrate transporter [Ar	0.992	0.604	0.830	0.0
297811451	625	proton-dependent oligopeptide transport	0.992	0.603	0.830	0.0
449468910	637	PREDICTED: probable peptide/nitrate tran	0.992	0.591	0.812	0.0
357501519	638	Peptide transporter-like protein [Medica	0.986	0.587	0.814	0.0
356569101	631	PREDICTED: probable peptide/nitrate tran	0.992	0.597	0.806	0.0
147771745	612	hypothetical protein VITISV_040927 [Viti	0.965	0.599	0.797	1e-180
147866216	626	hypothetical protein VITISV_008303 [Viti	0.973	0.591	0.797	1e-179

>gi|224053581|ref|XP_002297883.1| predicted protein [Populus trichocarpa] gi|222845141|gb|EEE82688.1| predicted protein [Populus trichocarpa]

 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/381 (85%), Positives = 352/381 (92%), Gaps = 4/381 (1%)

Query: 1   MGSREIKSPESLQETPAT----SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHG 56
           MGS EIKSPE L ETPAT    S+    KKL +YF+ESDNRRMA GRGYTGGTTPV++HG
Sbjct: 1   MGSGEIKSPEGLPETPATYDGVSNPIHSKKLGIYFLESDNRRMAFGRGYTGGTTPVDIHG 60

Query: 57  KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
           KPI DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMV FMFY+MH+ F  SSNAVNNFLG
Sbjct: 61  KPIPDLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVAFMFYIMHRPFTSSSNAVNNFLG 120

Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
           ISQ SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM +FMP+Q  CD++S LL
Sbjct: 121 ISQVSSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMNIFMPDQGQCDQLSLLL 180

Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
           G+CEPAKSWQMLYL TVLY+TGFGAAGIRPCVSSFGADQFDER ++YK+HLDRFFNFFYL
Sbjct: 181 GNCEPAKSWQMLYLNTVLYVTGFGAAGIRPCVSSFGADQFDERGENYKSHLDRFFNFFYL 240

Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
           SVT+GAIVAFTLVVYIQM+HGWGSAFG+LAIAMG+SNMLFFIGTPLYRHRLPGGSPLTRV
Sbjct: 241 SVTIGAIVAFTLVVYIQMKHGWGSAFGSLAIAMGMSNMLFFIGTPLYRHRLPGGSPLTRV 300

Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVI 356
           AQVLVAAF+KR A+FSSSELIGLYEVPGK SAIKGSGKIAHTDDFRCLDKAAL+LKED +
Sbjct: 301 AQVLVAAFQKRKASFSSSELIGLYEVPGKRSAIKGSGKIAHTDDFRCLDKAALQLKEDGV 360

Query: 357 NPSPWKLCTVTQVEEVKTLVR 377
           +PSPW+LCTVTQVEEVK L++
Sbjct: 361 DPSPWRLCTVTQVEEVKILIK 381

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085541|emb|CBI29273.3| unnamed protein product [Vitis vinifera]

 Score =  667 bits (1722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/381 (82%), Positives = 343/381 (90%), Gaps = 4/381 (1%)

Query: 1   MGSREIKSPESLQETPAT----SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHG 56
           M +REIKSPE   ETPA+    S S +RKKL +YF+ESD+RR A G GY GGTTPVN+HG
Sbjct: 1   MAAREIKSPEVQPETPASLGGNSESFRRKKLGIYFLESDDRRTAFGGGYVGGTTPVNIHG 60

Query: 57  KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
           KPI DLSKTGGW+AA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F+ S+NAVNNFLG
Sbjct: 61  KPIPDLSKTGGWVAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFSSSANAVNNFLG 120

Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
           ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM +F+PNQD CD+ S LL
Sbjct: 121 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMNIFVPNQDQCDQFSLLL 180

Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
           GSCEPAK WQM YLYTVLY+TGFGAAGIRPCVSSFGADQFDERS+DYKTHLDRFFNFFYL
Sbjct: 181 GSCEPAKPWQMFYLYTVLYVTGFGAAGIRPCVSSFGADQFDERSRDYKTHLDRFFNFFYL 240

Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
           SVT+GAIVAFT VVYIQ++ GWGSAFG+LAIAMGISN++FFIGTPLYRHRLPGGSPLTRV
Sbjct: 241 SVTIGAIVAFTAVVYIQIKRGWGSAFGSLAIAMGISNLVFFIGTPLYRHRLPGGSPLTRV 300

Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVI 356
           AQVLVAAFRKR+ +FSS E +GLYE+PGK SAIKGS KI HTDDFRCLDKAAL+LKED  
Sbjct: 301 AQVLVAAFRKRNVSFSSGEYVGLYELPGKQSAIKGSRKIVHTDDFRCLDKAALQLKEDGA 360

Query: 357 NPSPWKLCTVTQVEEVKTLVR 377
            PSPW+LCTVTQVEEVK LV+
Sbjct: 361 APSPWRLCTVTQVEEVKILVK 381

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425292|ref|XP_002272176.1| PREDICTED: probable peptide/nitrate transporter At5g13400 [Vitis vinifera]

 Score =  667 bits (1721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/381 (82%), Positives = 343/381 (90%), Gaps = 4/381 (1%)

Query: 1   MGSREIKSPESLQETPAT----SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHG 56
           M +REIKSPE   ETPA+    S S +RKKL +YF+ESD+RR A G GY GGTTPVN+HG
Sbjct: 1   MAAREIKSPEVQPETPASLGGNSESFRRKKLGIYFLESDDRRTAFGGGYVGGTTPVNIHG 60

Query: 57  KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
           KPI DLSKTGGW+AA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F+ S+NAVNNFLG
Sbjct: 61  KPIPDLSKTGGWVAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFSSSANAVNNFLG 120

Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
           ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM +F+PNQD CD+ S LL
Sbjct: 121 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMNIFVPNQDQCDQFSLLL 180

Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
           GSCEPAK WQM YLYTVLY+TGFGAAGIRPCVSSFGADQFDERS+DYKTHLDRFFNFFYL
Sbjct: 181 GSCEPAKPWQMFYLYTVLYVTGFGAAGIRPCVSSFGADQFDERSRDYKTHLDRFFNFFYL 240

Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
           SVT+GAIVAFT VVYIQ++ GWGSAFG+LAIAMGISN++FFIGTPLYRHRLPGGSPLTRV
Sbjct: 241 SVTIGAIVAFTAVVYIQIKRGWGSAFGSLAIAMGISNLVFFIGTPLYRHRLPGGSPLTRV 300

Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVI 356
           AQVLVAAFRKR+ +FSS E +GLYE+PGK SAIKGS KI HTDDFRCLDKAAL+LKED  
Sbjct: 301 AQVLVAAFRKRNVSFSSGEYVGLYELPGKQSAIKGSRKIVHTDDFRCLDKAALQLKEDGA 360

Query: 357 NPSPWKLCTVTQVEEVKTLVR 377
            PSPW+LCTVTQVEEVK LV+
Sbjct: 361 APSPWRLCTVTQVEEVKILVK 381

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240621|ref|NP_196844.1| putative peptide/nitrate transporter [Arabidopsis thaliana] gi|75335666|sp|Q9LYR6.1|PTR49_ARATH RecName: Full=Probable peptide/nitrate transporter At5g13400 gi|7543907|emb|CAB87147.1| peptide transporter-like protein [Arabidopsis thaliana] gi|18252225|gb|AAL61945.1| peptide transporter-like protein [Arabidopsis thaliana] gi|22136152|gb|AAM91154.1| peptide transporter-like protein [Arabidopsis thaliana] gi|332004507|gb|AED91890.1| putative peptide/nitrate transporter [Arabidopsis thaliana]

 Score =  657 bits (1696), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/377 (83%), Positives = 342/377 (90%)

Query: 1   MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIA 60
           M + EIKSP S+ ETP +SS H RK+LSV+FIESDNRR+ALGRGYTGGTTPVN+HGKPIA
Sbjct: 1   MVASEIKSPVSVPETPGSSSVHHRKQLSVFFIESDNRRLALGRGYTGGTTPVNIHGKPIA 60

Query: 61  DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQA 120
           +LSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F  SSNAVNNFLGISQA
Sbjct: 61  NLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFESSSNAVNNFLGISQA 120

Query: 121 SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCE 180
           SSVLGGFLADAYLGRYWTIAIFTT+YL GL GITL A++K+F+P+Q NC ++S LLG+CE
Sbjct: 121 SSVLGGFLADAYLGRYWTIAIFTTMYLVGLIGITLGASLKMFVPDQSNCGQLSLLLGNCE 180

Query: 181 PAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 240
            AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE+SKDYKTHLDRFFNFFYLSVT+
Sbjct: 181 EAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDEKSKDYKTHLDRFFNFFYLSVTL 240

Query: 241 GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVL 300
           GAI+AFTLVVY+QME GWG AFG LA+AMGISN LFF GTPLYRHRLPGGSPLTRVAQVL
Sbjct: 241 GAIIAFTLVVYVQMELGWGMAFGTLAVAMGISNALFFAGTPLYRHRLPGGSPLTRVAQVL 300

Query: 301 VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSP 360
           VAAFRKR+AAF+SSE IGLYEVPG  SAI GS KI H++DF  LDKAALELKED + PSP
Sbjct: 301 VAAFRKRNAAFTSSEFIGLYEVPGLKSAINGSRKIPHSNDFIWLDKAALELKEDGLEPSP 360

Query: 361 WKLCTVTQVEEVKTLVR 377
           WKLCTVTQVEEVK L+R
Sbjct: 361 WKLCTVTQVEEVKILIR 377

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811451|ref|XP_002873609.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata] gi|297319446|gb|EFH49868.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  655 bits (1690), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/378 (83%), Positives = 343/378 (90%), Gaps = 1/378 (0%)

Query: 1   MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIA 60
           M + EIKSP S+ ETP +SS H RK+LSV+FIESDNRR+ALGRGYTGGTTPVN+HGKPIA
Sbjct: 1   MVASEIKSPVSVPETPGSSSVHHRKQLSVFFIESDNRRLALGRGYTGGTTPVNIHGKPIA 60

Query: 61  DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQA 120
           +LSKTGGWIAALFIFGNEMAERMAYFGLSVNMV FMFYVMH+ F  SSNAVNNFLGISQA
Sbjct: 61  NLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFESSSNAVNNFLGISQA 120

Query: 121 SSVLGGFLADAYLGRYWTIAIFTTIYLA-GLTGITLCATMKVFMPNQDNCDRISQLLGSC 179
           SSVLGGFLADAYLGRYWTIAIFTT+YL   L GITL A++K+F+P+Q NC ++S LLG+C
Sbjct: 121 SSVLGGFLADAYLGRYWTIAIFTTMYLVVSLIGITLGASLKMFVPDQSNCGQLSLLLGNC 180

Query: 180 EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT 239
           EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE+SKDYKTHLDRFFNFFYLSVT
Sbjct: 181 EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDEKSKDYKTHLDRFFNFFYLSVT 240

Query: 240 VGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQV 299
           +GAI+AFTLVVY+QME GWG AFG LA+AMGISN LFF GTPLYRHRLPGGSPLTRVAQV
Sbjct: 241 LGAIIAFTLVVYVQMELGWGMAFGTLAVAMGISNALFFAGTPLYRHRLPGGSPLTRVAQV 300

Query: 300 LVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPS 359
           LVAAFRKR+AAF+SSE IGLYEVPG  SAI GS KI H+DDF  LDKAAL+LKED + PS
Sbjct: 301 LVAAFRKRNAAFTSSEFIGLYEVPGLKSAINGSRKIPHSDDFIWLDKAALQLKEDGLEPS 360

Query: 360 PWKLCTVTQVEEVKTLVR 377
           PWKLCTVTQVEEVK L+R
Sbjct: 361 PWKLCTVTQVEEVKILIR 378

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468910|ref|XP_004152164.1| PREDICTED: probable peptide/nitrate transporter At5g13400-like [Cucumis sativus] gi|449528581|ref|XP_004171282.1| PREDICTED: probable peptide/nitrate transporter At5g13400-like [Cucumis sativus]

 Score =  654 bits (1688), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/383 (81%), Positives = 341/383 (89%), Gaps = 6/383 (1%)

Query: 1   MGSREIKSPESLQETPAT------SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNV 54
           MGSREIKS   + ETP        S S QRKKL ++FIESD+RR A GRGYTGGTTPVN+
Sbjct: 1   MGSREIKSLHEVNETPVLGRLDEHSESFQRKKLGMFFIESDDRRTAFGRGYTGGTTPVNI 60

Query: 55  HGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNF 114
            GKPIADLSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH  F  SS+AVNNF
Sbjct: 61  RGKPIADLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHMPFTTSSDAVNNF 120

Query: 115 LGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQ 174
           LGISQASSVLGGFLADAYLGRYWTIAIFTTIYL GL GITLCAT+  F+PNQ  CD++S 
Sbjct: 121 LGISQASSVLGGFLADAYLGRYWTIAIFTTIYLGGLVGITLCATISTFVPNQAKCDQLSL 180

Query: 175 LLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF 234
           LLG CEPAK WQM YLYTVLY+TGFGAAGIRPCVSSFGADQFDE+SKDYK+HLDRFFNFF
Sbjct: 181 LLGRCEPAKPWQMTYLYTVLYLTGFGAAGIRPCVSSFGADQFDEKSKDYKSHLDRFFNFF 240

Query: 235 YLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLT 294
           YLSVTVGAI+AFT VVYIQ++HGWG+AFG+LAIAMG SN++FF+GTPLYRHRLPGGSPLT
Sbjct: 241 YLSVTVGAIIAFTAVVYIQIKHGWGAAFGSLAIAMGFSNVVFFLGTPLYRHRLPGGSPLT 300

Query: 295 RVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKED 354
           RVAQVLVAA+RKR+A+FS+SE +GL+EVPGK SAIKGSGKI HTDDFRCLDKAAL+LKED
Sbjct: 301 RVAQVLVAAYRKRNASFSNSEFVGLFEVPGKQSAIKGSGKILHTDDFRCLDKAALQLKED 360

Query: 355 VINPSPWKLCTVTQVEEVKTLVR 377
             NPSPWKLCTVTQVEEVK L++
Sbjct: 361 GGNPSPWKLCTVTQVEEVKILLK 383

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357501519|ref|XP_003621048.1| Peptide transporter-like protein [Medicago truncatula] gi|355496063|gb|AES77266.1| Peptide transporter-like protein [Medicago truncatula]

 Score =  649 bits (1674), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/378 (81%), Positives = 343/378 (90%), Gaps = 3/378 (0%)

Query: 1   MGSREIKSPESLQE-TPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPI 59
           M + EIKSPE+ Q+ TP TS S  RKKL ++FIES++RRMALGRGYT G+TPVN+HGK I
Sbjct: 1   MDTCEIKSPEAPQQGTPCTSMS--RKKLGIFFIESEDRRMALGRGYTRGSTPVNIHGKSI 58

Query: 60  ADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQ 119
            DLSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ FA SSNAVNNFLGISQ
Sbjct: 59  EDLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFASSSNAVNNFLGISQ 118

Query: 120 ASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSC 179
           ASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGIT+CATM +F+PNQ+NCD++S LLG+C
Sbjct: 119 ASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITICATMSIFVPNQENCDQLSLLLGNC 178

Query: 180 EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT 239
           EPAK WQM YLYTVLYIT FGAAGIRPCVSSFGADQFDERSK+YK+HLDRFFN FYLSVT
Sbjct: 179 EPAKPWQMTYLYTVLYITAFGAAGIRPCVSSFGADQFDERSKNYKSHLDRFFNLFYLSVT 238

Query: 240 VGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQV 299
           +GAI+AFT VVY+QM+ GWGSAFG+LAIAMG+SNMLFFIGTPLYRHRLPGGSPLTRVAQV
Sbjct: 239 IGAIIAFTAVVYVQMKLGWGSAFGSLAIAMGVSNMLFFIGTPLYRHRLPGGSPLTRVAQV 298

Query: 300 LVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPS 359
           LVAA+RKR  +F +SE++GLYEVPG+ SAIKGS KIAHTDDFR LDKAAL+LK+D  NPS
Sbjct: 299 LVAAYRKRKESFGNSEVVGLYEVPGRRSAIKGSQKIAHTDDFRFLDKAALQLKQDGPNPS 358

Query: 360 PWKLCTVTQVEEVKTLVR 377
            W LCTVTQVEEVK L++
Sbjct: 359 QWNLCTVTQVEEVKILIK 376

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569101|ref|XP_003552744.1| PREDICTED: probable peptide/nitrate transporter At5g13400-like [Glycine max]

 Score =  642 bits (1655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 304/377 (80%), Positives = 335/377 (88%)

Query: 1   MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIA 60
           M S EIKSP    +     +S +RKKL++YFIES++RRMA GRGYT G+TPV++HGK I 
Sbjct: 1   MDSSEIKSPAEGSQQGTPGNSLRRKKLAIYFIESEDRRMAFGRGYTAGSTPVDIHGKSIV 60

Query: 61  DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQA 120
           DLSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F  SSNAVNNFLGISQA
Sbjct: 61  DLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFTSSSNAVNNFLGISQA 120

Query: 121 SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCE 180
           SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCAT+  F+PNQ+ CD+ S LLG+CE
Sbjct: 121 SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATISKFVPNQEECDQFSLLLGNCE 180

Query: 181 PAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 240
            AK WQM YLYT LYIT FGAAGIRPCVSSFGADQFDERSK+YK HLDRFFN FYLSVT+
Sbjct: 181 AAKPWQMTYLYTALYITAFGAAGIRPCVSSFGADQFDERSKNYKAHLDRFFNIFYLSVTI 240

Query: 241 GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVL 300
           GAIVAFT+VVY+QM+ GWGSAFG+LAIAMGISNM+FFIGTPLYRHRLPGGSPLTRVAQVL
Sbjct: 241 GAIVAFTVVVYVQMKFGWGSAFGSLAIAMGISNMVFFIGTPLYRHRLPGGSPLTRVAQVL 300

Query: 301 VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSP 360
           VAAFRKR+A+F SSE IGLYEVPG+ SAIKGS KI+HTDDFR LDKAAL+LKED  NPSP
Sbjct: 301 VAAFRKRNASFGSSEFIGLYEVPGRQSAIKGSRKISHTDDFRFLDKAALQLKEDGANPSP 360

Query: 361 WKLCTVTQVEEVKTLVR 377
           W+LCTVTQVEEVK L++
Sbjct: 361 WRLCTVTQVEEVKILMK 377

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147771745|emb|CAN78165.1| hypothetical protein VITISV_040927 [Vitis vinifera]

 Score =  637 bits (1642), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 304/381 (79%), Positives = 333/381 (87%), Gaps = 14/381 (3%)

Query: 1   MGSREIKSPESLQETPAT----SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHG 56
           M +REIKSPE   ETPA+    S S +RKKL +YF+ESD+RR A G GY GGTTPVN+HG
Sbjct: 1   MAAREIKSPEVQPETPASLGGNSESFRRKKLGIYFLESDDRRTAFGGGYVGGTTPVNIHG 60

Query: 57  KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
           KPI DLSKTGGW+AA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F+ S+NAVNNFLG
Sbjct: 61  KPIPDLSKTGGWVAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFSSSANAVNNFLG 120

Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
           ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM +F+PNQD CD+ S LL
Sbjct: 121 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMNIFVPNQDQCDQFSLLL 180

Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
           GSCEPAK WQM YLYTVLY+TGFGAAGIRPCVSSFGADQFDERS+DYKTHLDRFFNFFYL
Sbjct: 181 GSCEPAKPWQMFYLYTVLYVTGFGAAGIRPCVSSFGADQFDERSRDYKTHLDRFFNFFYL 240

Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
           SVT+GAIVAFT VVYIQ++ GWGSAFG+LAIAMGISN++FFIGTPLYRHRLPGGSPLTRV
Sbjct: 241 SVTIGAIVAFTAVVYIQIKRGWGSAFGSLAIAMGISNLVFFIGTPLYRHRLPGGSPLTRV 300

Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVI 356
           AQVLVAAFRKR+ +FSS E +GLYE+PGK SAIKGS KI HTDDFR          +D  
Sbjct: 301 AQVLVAAFRKRNVSFSSGEYVGLYELPGKQSAIKGSRKIVHTDDFR----------KDGA 350

Query: 357 NPSPWKLCTVTQVEEVKTLVR 377
            PSPW+LCTVTQVEEVK LV+
Sbjct: 351 APSPWRLCTVTQVEEVKILVK 371

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147866216|emb|CAN84143.1| hypothetical protein VITISV_008303 [Vitis vinifera]

 Score =  634 bits (1636), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 304/381 (79%), Positives = 333/381 (87%), Gaps = 11/381 (2%)

Query: 1   MGSREIKSPESLQETPAT----SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHG 56
           M +REIKSPE   ETPA+    S S +RKKL +YF+ESD+RR A G GY GGTTPVN+HG
Sbjct: 1   MAAREIKSPEVQPETPASLGGNSESFRRKKLGIYFLESDDRRTAFGGGYVGGTTPVNIHG 60

Query: 57  KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
           KPI DL K        +  GNEMAERMAYFGLSVNMV FMFYVMH+ F+ S+NAVNNFLG
Sbjct: 61  KPIPDLFKD-------WRLGNEMAERMAYFGLSVNMVAFMFYVMHRPFSSSANAVNNFLG 113

Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
           ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM +F+PNQD CD+ S LL
Sbjct: 114 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMNIFVPNQDQCDQFSLLL 173

Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
           GSCEPAK WQM YLYTVLY+TGFGAAGIRPCVSSFGADQFDERS+DYKTHLDRFFNFFYL
Sbjct: 174 GSCEPAKPWQMFYLYTVLYVTGFGAAGIRPCVSSFGADQFDERSRDYKTHLDRFFNFFYL 233

Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
           SVT+GAIVAFT VVYIQ++ GWGSAFG+LAIAMGISN++FFIGTPLYRHRLPGGSPLTRV
Sbjct: 234 SVTIGAIVAFTAVVYIQIKRGWGSAFGSLAIAMGISNLVFFIGTPLYRHRLPGGSPLTRV 293

Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVI 356
           AQVLVAAFRKR+ +FSS E +GLYE+PGK SAIKGS KI HTDDFRCLDKAAL+LKED  
Sbjct: 294 AQVLVAAFRKRNVSFSSGEYVGLYELPGKQSAIKGSRKIVHTDDFRCLDKAALQLKEDGA 353

Query: 357 NPSPWKLCTVTQVEEVKTLVR 377
            PSPW+LCTVTQVEEVK LV+
Sbjct: 354 APSPWRLCTVTQVEEVKILVK 374

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	380
TAIR|locus:2181655	624	AT5G13400 [Arabidopsis thalian	0.992	0.604	0.830	7.4e-169
TAIR|locus:2080235	570	PTR1 "peptide transporter 1" [	0.844	0.563	0.447	3.2e-72
TAIR|locus:2018032	590	PTR6 "peptide transporter 6" [	0.886	0.571	0.432	9.9e-71
TAIR|locus:2041125	585	PTR2 "peptide transporter 2" [	0.834	0.541	0.434	4.4e-68
TAIR|locus:2150124	570	PTR5 "peptide transporter 5" [	0.844	0.563	0.431	1.1e-66
TAIR|locus:2041140	545	PTR4 "peptide transporter 4" [	0.647	0.451	0.417	2.3e-60
TAIR|locus:2043803	577	AT2G26690 [Arabidopsis thalian	0.821	0.540	0.411	7.3e-59
TAIR|locus:2008855	590	NRT1.1 "nitrate transporter 1.	0.828	0.533	0.404	9.6e-57
TAIR|locus:2161428	586	AT5G46040 [Arabidopsis thalian	0.857	0.556	0.364	7e-54
TAIR|locus:2026884	596	AT1G68570 [Arabidopsis thalian	0.826	0.526	0.378	8.9e-54

TAIR|locus:2181655 AT5G13400 [Arabidopsis thaliana (taxid:3702)]

 Score = 1642 (583.1 bits), Expect = 7.4e-169, P = 7.4e-169
 Identities = 313/377 (83%), Positives = 342/377 (90%)

Query:     1 MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIA 60
             M + EIKSP S+ ETP +SS H RK+LSV+FIESDNRR+ALGRGYTGGTTPVN+HGKPIA
Sbjct:     1 MVASEIKSPVSVPETPGSSSVHHRKQLSVFFIESDNRRLALGRGYTGGTTPVNIHGKPIA 60

Query:    61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQA 120
             +LSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F  SSNAVNNFLGISQA
Sbjct:    61 NLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFESSSNAVNNFLGISQA 120

Query:   121 SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCE 180
             SSVLGGFLADAYLGRYWTIAIFTT+YL GL GITL A++K+F+P+Q NC ++S LLG+CE
Sbjct:   121 SSVLGGFLADAYLGRYWTIAIFTTMYLVGLIGITLGASLKMFVPDQSNCGQLSLLLGNCE 180

Query:   181 PAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 240
              AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE+SKDYKTHLDRFFNFFYLSVT+
Sbjct:   181 EAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDEKSKDYKTHLDRFFNFFYLSVTL 240

Query:   241 GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVL 300
             GAI+AFTLVVY+QME GWG AFG LA+AMGISN LFF GTPLYRHRLPGGSPLTRVAQVL
Sbjct:   241 GAIIAFTLVVYVQMELGWGMAFGTLAVAMGISNALFFAGTPLYRHRLPGGSPLTRVAQVL 300

Query:   301 VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSP 360
             VAAFRKR+AAF+SSE IGLYEVPG  SAI GS KI H++DF  LDKAALELKED + PSP
Sbjct:   301 VAAFRKRNAAFTSSEFIGLYEVPGLKSAINGSRKIPHSNDFIWLDKAALELKEDGLEPSP 360

Query:   361 WKLCTVTQVEEVKTLVR 377
             WKLCTVTQVEEVK L+R
Sbjct:   361 WKLCTVTQVEEVKILIR 377

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 730 (262.0 bits), Expect = 3.2e-72, P = 3.2e-72
 Identities = 150/335 (44%), Positives = 209/335 (62%)

Query:    45 YTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSF 104
             YT   T V++H  P A+  KTG W A  FI GNE  ER+AY+G+  N+V ++   +++  
Sbjct:     7 YTQDGT-VDIHKNP-ANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGN 64

Query:   105 ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMP 164
             A ++N V N+ G    + ++G F+ADAYLGRYWTIA F  IY++G+T +TL A++    P
Sbjct:    65 ATAANNVTNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKP 124

Query:   165 NQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224
                N D       +C P  S Q    +  LY+   G  GI+PCVSSFGADQFDE  ++ K
Sbjct:   125 GNCNAD-------TCHPNSS-QTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEK 176

Query:   225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYR 284
                  FFN+FY S+ VGA++A T++V+IQM  GWG  FG   +AM I+   FF G+  YR
Sbjct:   177 IKKSSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYR 236

Query:   285 HRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCL 344
              + PGGSPLTR+ QV+VAAFRK        + + L+E     S IKGS K+ HTD+ +  
Sbjct:   237 LQRPGGSPLTRIFQVIVAAFRKISVKVPEDKSL-LFETADDESNIKGSRKLVHTDNLKFF 295

Query:   345 DKAALELKEDVINP---SPWKLCTVTQVEEVKTLV 376
             DKAA+E + D I     +PW+LC+VTQVEE+K+++
Sbjct:   296 DKAAVESQSDSIKDGEVNPWRLCSVTQVEELKSII 330

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0006807 "nitrogen compound metabolic process" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0015824 "proline transport" evidence=RCA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

TAIR|locus:2018032 PTR6 "peptide transporter 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 716 (257.1 bits), Expect = 9.9e-71, P = 9.9e-71
 Identities = 151/349 (43%), Positives = 211/349 (60%)

Query:    33 ESDNRRMALGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNM 92
             E  N  +  G   T     ++++G P +   KTG W A  FI GNE  ER+AY+G++ N+
Sbjct:    23 EEVNNHLT-GLSSTAEDGSIDIYGNPPSK-KKTGNWKACPFILGNECCERLAYYGIAKNL 80

Query:    93 VTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152
             +T+    +H+S   +++ V  + G    + ++G  +AD+Y GRYWTIA F+ IY  G+  
Sbjct:    81 ITYYTSELHESNVSAASDVMIWQGTCYITPLIGAVIADSYWGRYWTIASFSAIYFIGMAL 140

Query:   153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFG 212
             +TL A++ V  P    C  ++  L  C PA + Q    +T LY+   G  GI+PCVSSFG
Sbjct:   141 LTLSASLPVLKPAA--CAGVAAAL--CSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFG 196

Query:   213 ADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS 272
             ADQFD+     +     FFN+FY S+ +G+ ++ TL+V++Q   GWG  F    + MG+S
Sbjct:   197 ADQFDDTDPRERVRKASFFNWFYFSINIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVS 256

Query:   273 NMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGS 332
                FFIGTPLYR + PGGSP+TRV QVLVAA+RK        ++  LYE   K+S I GS
Sbjct:   257 IASFFIGTPLYRFQKPGGSPITRVCQVLVAAYRKLKLNLPE-DISFLYETREKNSMIAGS 315

Query:   333 GKIAHTDDFRCLDKAAL----ELKEDVINPSPWKLCTVTQVEEVKTLVR 377
              KI HTD ++ LDKAA+    E K    + +PWKLCTVTQVEEVKTL+R
Sbjct:   316 RKIQHTDGYKFLDKAAVISEYESKSGAFS-NPWKLCTVTQVEEVKTLIR 363

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0009705 "plant-type vacuole membrane" evidence=IDA

TAIR|locus:2041125 PTR2 "peptide transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 691 (248.3 bits), Expect = 4.4e-68, P = 4.4e-68
 Identities = 143/329 (43%), Positives = 201/329 (61%)

Query:    52 VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
             V+ +G P     KTG W A  FI GNE  ER+AY+G++ N++T++   +H+    ++  V
Sbjct:    30 VDFNGNPPLK-EKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAATNV 88

Query:   112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
               + G    + ++G  LADAY GRYWTIA F+ IY  G++ +TL A++    P +  C  
Sbjct:    89 TTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAE--C-- 144

Query:   172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
             I     S  PA   Q    +  LY+   G  GI+PCVSSFGADQFD+     +     FF
Sbjct:   145 IGDFCPSATPA---QYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFF 201

Query:   232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
             N+FY S+ +GA+V+ +L+V+IQ   GWG  FG   + MG++   FF GTPLYR + PGGS
Sbjct:   202 NWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGS 261

Query:   292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
             P+TR++QV+VA+FRK          + LYE   K+SAI GS KI HTDD + LDKAA+  
Sbjct:   262 PITRISQVVVASFRKSSVKVPEDATL-LYETQDKNSAIAGSRKIEHTDDCQYLDKAAVIS 320

Query:   352 KEDVIN---PSPWKLCTVTQVEEVKTLVR 377
             +E+  +    + W+LCTVTQVEE+K L+R
Sbjct:   321 EEESKSGDYSNSWRLCTVTQVEELKILIR 349

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0015112 "nitrate transmembrane transporter activity" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006869 "lipid transport" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0015334 "high affinity oligopeptide transporter activity" evidence=IDA

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0015197 "peptide transporter activity" evidence=ISS

GO:0015833 "peptide transport" evidence=TAS

TAIR|locus:2150124 PTR5 "peptide transporter 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 678 (243.7 bits), Expect = 1.1e-66, P = 1.1e-66
 Identities = 145/336 (43%), Positives = 202/336 (60%)

Query:    45 YTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSF 104
             YT   T +++H KP A+ +KTG W A  FI G E  ER+AY+G+S N++ ++   M+   
Sbjct:     8 YTKDGT-LDIHKKP-ANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMEN 65

Query:   105 ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMP 164
               +S +V+N+ G   A+ ++G F+ADAYLGRYWTIA F  IY+AG+T +T+ A++    P
Sbjct:    66 VSASKSVSNWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPGLTP 125

Query:   165 NQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224
                 C        +C  A + Q    +  LY+   G  GI+PCVSSFGADQFD+  +  K
Sbjct:   126 T---CSG-----ETCH-ATAGQTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEK 176

Query:   225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYR 284
                  FFN+FY  + VGA++A +++V+IQM  GWG   G   +AM I+ + FF G+  YR
Sbjct:   177 ESKSSFFNWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYR 236

Query:   285 HRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCL 344
              + PGGSPLTR+ QV+VA+ RK        E + LYE     S+I GS K+ HT      
Sbjct:   237 LQKPGGSPLTRMLQVIVASCRKSKVKIPEDESL-LYENQDAESSIIGSRKLEHTKILTFF 295

Query:   345 DKAALELKED---VINPSPWKLCTVTQVEEVKTLVR 377
             DKAA+E + D       S WKLCTVTQVEE+K L+R
Sbjct:   296 DKAAVETESDNKGAAKSSSWKLCTVTQVEELKALIR 331

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009860 "pollen tube growth" evidence=IMP

GO:0042936 "dipeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

TAIR|locus:2041140 PTR4 "peptide transporter 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 543 (196.2 bits), Expect = 2.3e-60, Sum P(2) = 2.3e-60
 Identities = 107/256 (41%), Positives = 156/256 (60%)

Query:    52 VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
             +++HG P    + TG W A  FIF NE  ER+AY+G++ N++T+    +H++   ++  V
Sbjct:    31 IDIHGNPPLKQT-TGNWKACPFIFANECCERLAYYGIAKNLITYFTNELHETNVSAARHV 89

Query:   112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
               + G    + ++G  +ADAY GRYWTIA F+ IY  G+  +TL A++    P +  C  
Sbjct:    90 MTWQGTCYITPLIGALIADAYWGRYWTIACFSAIYFTGMVALTLSASVPGLKPAE--C-- 145

Query:   172 ISQLLGS-CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230
                 +GS C PA   Q   L++ LY+   G  GI+PCVSSFGADQFD+     +     F
Sbjct:   146 ----IGSLCPPATMVQSTVLFSGLYLIALGTGGIKPCVSSFGADQFDKTDPSERVRKASF 201

Query:   231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGG 290
             FN+FY ++ +GA V+ T++V+IQ  +GW   F    + MG++ M FF GTPLYR + P G
Sbjct:   202 FNWFYFTINIGAFVSSTVLVWIQENYGWELGFLIPTVFMGLATMSFFFGTPLYRFQKPRG 261

Query:   291 SPLTRVAQVLVAAFRK 306
             SP+T V QVLVAA+RK
Sbjct:   262 SPITSVCQVLVAAYRK 277

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0009705 "plant-type vacuole membrane" evidence=IDA

TAIR|locus:2043803 AT2G26690 [Arabidopsis thaliana (taxid:3702)]

 Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
 Identities = 137/333 (41%), Positives = 198/333 (59%)

Query:    52 VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
             V+  G+P AD SKTGGWI A  I G E+ ER++  G++VN+VT++   MH   + S+N V
Sbjct:    13 VDYKGRP-ADKSKTGGWITAALILGIEVVERLSTMGIAVNLVTYLMETMHLPSSTSANIV 71

Query:   112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
              +F+G S    +LGGFLAD++LGR+ TI IF+TI   G TG    AT K+       C  
Sbjct:    72 TDFMGTSFLLCLLGGFLADSFLGRFKTIGIFSTIQALG-TGALAVAT-KLPELRPPTCHH 129

Query:   172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
                   +C PA ++QM  LY  LY+   G  G++  +S FG+DQFD++    K H+  FF
Sbjct:   130 GE----ACIPATAFQMTILYVSLYLIALGTGGLKSSISGFGSDQFDDKDPKEKAHMAFFF 185

Query:   232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
             N F+  +++G ++A T++VY+Q E G   A+G   ++M I+ ++F  GT  YR++   GS
Sbjct:   186 NRFFFFISMGTLLAVTVLVYMQDEVGRSWAYGICTVSMAIAIVIFLCGTKRYRYKKSQGS 245

Query:   292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
             P+ ++ QV+ AAFRKR      S ++ LYE       I+    I HTD F  LDKAA+  
Sbjct:   246 PVVQIFQVIAAAFRKRKMELPQS-IVYLYE--DNPEGIR----IEHTDQFHLLDKAAIVA 298

Query:   352 KED-------VINPSPWKLCTVTQVEEVKTLVR 377
             + D       V  P+PWKL +VT+VEEVK +VR
Sbjct:   299 EGDFEQTLDGVAIPNPWKLSSVTKVEEVKMMVR 331

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2008855 NRT1.1 "nitrate transporter 1.1" [Arabidopsis thaliana (taxid:3702)]

 Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
 Identities = 133/329 (40%), Positives = 189/329 (57%)

Query:    56 GKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFL 115
             G+P AD SKTGGW +A  I   E  ER+   G+ VN+VT++   MH   A ++N V NFL
Sbjct:    20 GRP-ADRSKTGGWASAAMILCIEAVERLTTLGIGVNLVTYLTGTMHLGNATAANTVTNFL 78

Query:   116 GISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQL 175
             G S    +LGGF+AD +LGRY TIAIF  I   G++ +TL   +    P + N    S  
Sbjct:    79 GTSFMLCLLGGFIADTFLGRYLTIAIFAAIQATGVSILTLSTIIPGLRPPRCNPTTSSH- 137

Query:   176 LGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY 235
                CE A   Q+  LY  LY+T  G  G++  VS FG+DQFDE     ++ +  FFN F+
Sbjct:   138 ---CEQASGIQLTVLYLALYLTALGTGGVKASVSGFGSDQFDETEPKERSKMTYFFNRFF 194

Query:   236 LSVTVGAIVAFTLVVYIQMEHG--WGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPL 293
               + VG+++A T++VY+Q + G  WG    A AI + +S  +F  GT  YR +   GSP+
Sbjct:   195 FCINVGSLLAVTVLVYVQDDVGRKWGYGICAFAIVLALS--VFLAGTNRYRFKKLIGSPM 252

Query:   294 TRVAQVLVAAFRKRHAAFSS--SELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
             T+VA V+VAA+R R     +  S L  + ++     ++KG  K+ HT+ FR LDKAA+  
Sbjct:   253 TQVAAVIVAAWRNRKLELPADPSYLYDVDDIIAAEGSMKGKQKLPHTEQFRSLDKAAIRD 312

Query:   352 KEDVINPS---PWKLCTVTQVEEVKTLVR 377
             +E  +  +    W L T+T VEEVK +VR
Sbjct:   313 QEAGVTSNVFNKWTLSTLTDVEEVKQIVR 341

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0009414 "response to water deprivation" evidence=IMP

GO:0010167 "response to nitrate" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0015706 "nitrate transport" evidence=IMP;RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0052541 "plant-type cell wall cellulose metabolic process" evidence=RCA

GO:0052546 "cell wall pectin metabolic process" evidence=RCA

GO:0015112 "nitrate transmembrane transporter activity" evidence=IMP

TAIR|locus:2161428 AT5G46040 [Arabidopsis thaliana (taxid:3702)]

 Score = 557 (201.1 bits), Expect = 7.0e-54, P = 7.0e-54
 Identities = 123/337 (36%), Positives = 187/337 (55%)

Query:    41 LGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM 100
             +G  YT   T V++ G  +   S+TG W A  F+   E+ ERMAY+G+S N+V +M   +
Sbjct:     6 VGDDYTKDGT-VDLRGNRVRR-SQTGRWKACSFVVVYEVFERMAYYGISSNLVIYMTTKL 63

Query:   101 HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMK 160
             H+    SSN V N++G S  + +LG ++ADA+ GRY T  I + IYL G+  +TL  ++ 
Sbjct:    64 HQGTVKSSNNVTNWVGTSWLTPILGAYVADAHFGRYITFVISSAIYLLGMALLTLSVSLP 123

Query:   161 VFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220
                P +  C   +  + +CE A   Q+   +  LY    G  G +P +S+ GADQFDE  
Sbjct:   124 GLKPPK--CSTAN--VENCEKASVIQLAVFFGALYTLAIGTGGTKPNISTIGADQFDEFD 179

Query:   221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280
                K H   FFN++  S+  G   A T++VY+Q   GW   +G   + +  S  +F +GT
Sbjct:   180 PKDKIHKHSFFNWWMFSIFFGTFFATTVLVYVQDNVGWAIGYGLSTLGLAFSIFIFLLGT 239

Query:   281 PLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDD 340
              LYRH+LP GSP T++A+V+VA+ RK     SS      YE+P    A K +  I  T  
Sbjct:   240 RLYRHKLPMGSPFTKMARVIVASLRKAREPMSSDST-RFYELPPMEYASKRAFPIHSTSS 298

Query:   341 FRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVR 377
              R L++A+L+      +   W+LCT+T+VEE K +++
Sbjct:   299 LRFLNRASLKTG----STHKWRLCTITEVEETKQMLK 331

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009624 "response to nematode" evidence=IEP

TAIR|locus:2026884 AT1G68570 [Arabidopsis thaliana (taxid:3702)]

 Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
 Identities = 124/328 (37%), Positives = 183/328 (55%)

Query:    54 VHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNN 113
             +HG+P  +  K GG I   FIF NE+ E++A  G   NM++++   +H     ++N + N
Sbjct:    16 LHGRP--NRPK-GGLITMPFIFANEICEKLAVVGFHANMISYLTTQLHLPLTKAANTLTN 72

Query:   114 FLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRIS 173
             F G S  + +LG F+AD++ GR+WTI   + IY  G+T +T+ A +    P     + + 
Sbjct:    73 FAGTSSLTPLLGAFIADSFAGRFWTITFASIIYQIGMTLLTISAIIPTLRPPPCKGEEV- 131

Query:   174 QLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF 233
                  C  A + Q+  LY  L +   G+ GIRPCV +FGADQFDE   +  T    +FN+
Sbjct:   132 -----CVVADTAQLSILYVALLLGALGSGGIRPCVVAFGADQFDESDPNQTTKTWNYFNW 186

Query:   234 FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPL 293
             +Y  +    ++A T++V+IQ   GWG   G   +AM +S + F  G  LYRH +P GSP 
Sbjct:   187 YYFCMGAAVLLAVTVLVWIQDNVGWGLGLGIPTVAMFLSVIAFVGGFQLYRHLVPAGSPF 246

Query:   294 TRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKE 353
             TR+ QV VAAFRKR     S   + LY      + I   GK+ HT     LDKAA+  +E
Sbjct:   247 TRLIQVGVAAFRKRKLRMVSDPSL-LYFNDEIDAPISLGGKLTHTKHMSFLDKAAIVTEE 305

Query:   354 DVINPS--P--WKLCTVTQVEEVKTLVR 377
             D + P   P  W+L TV +VEE+K+++R
Sbjct:   306 DNLKPGQIPNHWRLSTVHRVEELKSVIR 333

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LYR6	PTR49_ARATH	No assigned EC number	0.8302	0.9921	0.6041	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	380
pfam00854	372	pfam00854, PTR2, POT family	7e-38
COG3104	498	COG3104, PTR2, Dipeptide/tripeptide permease [Amin	7e-19
TIGR00926	641	TIGR00926, 2A1704, Peptide:H+ symporter (also tran	5e-16
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-07
TIGR00924	475	TIGR00924, yjdL_sub1_fam, amino acid/peptide trans	1e-06
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	3e-05
PRK15462	493	PRK15462, PRK15462, dipeptide/tripeptide permease	0.002

>gnl|CDD|216153 pfam00854, PTR2, POT family

 Score =  139 bits (352), Expect = 7e-38
 Identities = 63/244 (25%), Positives = 102/244 (41%), Gaps = 35/244 (14%)

Query: 136 YWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLY 195
           + TI + + IY  G   +TL A      P Q                    +   Y  LY
Sbjct: 1   FKTILLGSIIYAIGHVLLTLGAIPPSLSPVQ--------------------VALFYIGLY 40

Query: 196 ITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME 255
           +   G  GI+P VS+FGADQFDE     +   D FF++FY S+  G+++A  +  Y+Q  
Sbjct: 41  LIALGTGGIKPNVSAFGADQFDETQDPRR---DGFFSWFYFSINAGSLIATIITPYLQQN 97

Query: 256 HGWGSAFGALAIAMGISNMLFFIGTPLYRHRLP-GGSPLTR-VAQVLVAAFRKRHAAFSS 313
            G+   FG  A+ M ++ ++F +G+  Y+ + P GGSP T  +A ++ AA + R      
Sbjct: 98  VGYPLGFGLPAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCIAFIITAAGKNRKLQLPK 157

Query: 314 SELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVK 373
                LY    K++    S    HT        A + +                 V  ++
Sbjct: 158 DS-HWLYWALEKYNKRSISQTKVHT------RVAVIFIPLPKFWA---LFDQQGSVWLLQ 207

Query: 374 TLVR 377
            ++ 
Sbjct: 208 AILL 211

The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372

>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]

 Score = 87.3 bits (217), Expect = 7e-19
 Identities = 40/210 (19%), Positives = 84/210 (40%), Gaps = 34/210 (16%)

Query: 74  IFGNEMAERMAYFGLSVNMVTFMFYVMHKSF----ADSSNAVNNFLGISQASSVLGGFLA 129
           IF  E+ ER +Y+G+   ++ +++Y +          ++   + +  +   + ++GG+LA
Sbjct: 26  IFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLA 85

Query: 130 DAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLY 189
           D  LG   TI +   +   G   + + +                                
Sbjct: 86  DRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGG-------------------------- 119

Query: 190 LYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249
           LY  L +   G    +P +SS   + + +         D  F  FY+ + +G+++A  + 
Sbjct: 120 LYIGLALIIVGTGLFKPNISSLLGELYPKD----DPRRDGGFTLFYMGINIGSLIAPIIT 175

Query: 250 VYIQMEHGWGSAFGALAIAMGISNMLFFIG 279
             + + +GW   FG  A+ M I  ++F +G
Sbjct: 176 GLLAINYGWHVGFGLAAVGMIIGLVIFLLG 205

Length = 498

>gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

 Score = 79.4 bits (196), Expect = 5e-16
 Identities = 59/227 (25%), Positives = 109/227 (48%), Gaps = 34/227 (14%)

Query: 92  MVTFMF-YVMHKSFADSSNAVN---NFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147
           M T +  Y+++    +   A N    F  +   + ++G  +AD++LG++ TI   + +Y+
Sbjct: 6   MKTILVLYLLNFLGWNEDTATNIYHTFTYLCYLTPLIGALIADSWLGKFKTILYLSLVYV 65

Query: 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPC 207
            G    +L A   +  P  D       L+G                L +   G  GI+PC
Sbjct: 66  VGHALASLGAVPSLGHPLHD----ALSLVG----------------LALIALGTGGIKPC 105

Query: 208 VSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL-------VVYIQMEHGWGS 260
           VS+FG DQF+ER    +    RFF+FFY ++  G++ +  +       V     +  +  
Sbjct: 106 VSAFGGDQFEERQLSLRF---RFFSFFYFAINAGSLFSTIITPILRGDVGCFGCQDCFPL 162

Query: 261 AFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKR 307
           AFG   I M ++ ++F +G+ +Y+ + P G+ +++V + +V A +KR
Sbjct: 163 AFGVPGILMTLALIVFSMGSKMYKKKPPVGNIVSKVMKCIVFALKKR 209

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 37/211 (17%), Positives = 66/211 (31%), Gaps = 36/211 (17%)

Query: 72  LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADA 131
           L +F       +    LS  +       +  S + +   V+ F       S+L G+L+D 
Sbjct: 2   LLLFLGFFLSGLDRGLLSPALPLLAED-LGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60

Query: 132 YLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLY 191
           + GR   + +   ++  G   +                            A S  +L + 
Sbjct: 61  F-GRRRVLLLGLLLFALGSLLLAF--------------------------ASSLWLLLVG 93

Query: 192 TVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY 251
             L   G G   + P  ++  A+ F  +         R    F     +GA++   L   
Sbjct: 94  RFL--LGLGGGALYPAAAALIAEWFPPK------ERGRALGLFSAGFGLGALLGPLLGGL 145

Query: 252 IQMEHGWGSAFGALAIAMGISNMLFFIGTPL 282
           +    GW   F  LAI   +  +L      L
Sbjct: 146 LAESLGWRWLFLILAILGLLLALLLLFLLRL 176

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 42/217 (19%), Positives = 77/217 (35%), Gaps = 39/217 (17%)

Query: 74  IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFAD--SSNAVNNFLGISQASSVLGGFLADA 131
           +F  E+ ER +Y+G+   +  ++       F+   +      +  +    + +G +  D 
Sbjct: 15  LFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDR 74

Query: 132 YLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLY 191
             G   T+          L GI L                   +LG    A S   +Y  
Sbjct: 75  VWGTKKTMV---------LGGIVL-------------------MLGHFMLAMS---IYPD 103

Query: 192 TVLYITGF---GAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL 248
            + Y  G    G+   +   SS     ++   +      D  F  FY+S+ +G+ ++  L
Sbjct: 104 LIFYGLGTIAVGSGLFKANPSSMVGKLYE---RGDMPRRDGGFTLFYMSINIGSFISPLL 160

Query: 249 VVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRH 285
              I   +G+   F   A+ M I  + FF G  + R 
Sbjct: 161 AGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRD 197

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 39/223 (17%), Positives = 69/223 (30%), Gaps = 35/223 (15%)

Query: 83  MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIF 142
           +    L   +  ++   +  S  +    +  F      +  L G L+D + GR   + I 
Sbjct: 10  LGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRF-GRRRVLLIG 68

Query: 143 TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAA 202
             ++  GL  +   +                          S  +L +  VL   G G  
Sbjct: 69  LLLFALGLLLLLFAS--------------------------SLWLLLVLRVL--QGLGGG 100

Query: 203 GIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAF 262
            + P  ++  AD F            R          +GA +   L   +    GW +AF
Sbjct: 101 ALFPAAAALIADWFPPE------ERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAF 154

Query: 263 GALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFR 305
             LAI   ++ +L  +  P          P       LV A++
Sbjct: 155 LILAILALLAAVLAALLLPRPPPESKRPKPAEEAPAPLVPAWK 197

Length = 346

>gnl|CDD|237971 PRK15462, PRK15462, dipeptide/tripeptide permease D; Provisional

 Score = 39.5 bits (92), Expect = 0.002
 Identities = 47/216 (21%), Positives = 85/216 (39%), Gaps = 31/216 (14%)

Query: 70  AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLA 129
           A  ++   ++ E  +++G+   ++ ++   +      +    + +  +   + +LGGFLA
Sbjct: 10  AIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLA 69

Query: 130 DAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLY 189
           D  LG            +A + G  L A   V             +LG+ E   S+  LY
Sbjct: 70  DKVLGN----------RMAVMLGALLMAIGHV-------------VLGASEIHPSF--LY 104

Query: 190 LYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249
           L   + + G+G    +  VS        E  +      D  F+  Y +  VG+I+A    
Sbjct: 105 LSLAIIVCGYGL--FKSNVSCL----LGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIAC 158

Query: 250 VYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRH 285
            Y Q E+ W   FG  A+ M    ++F  G   + H
Sbjct: 159 GYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTH 194

Length = 493

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	380
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	100.0
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	99.96
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.94
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.92
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.9
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.88
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.86
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	99.86
PRK03545	390	putative arabinose transporter; Provisional	99.74
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.73
PRK10054	395	putative transporter; Provisional	99.72
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.72
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.71
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.71
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.7
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.7
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.69
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.69
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.69
TIGR00900	365	2A0121 H+ Antiporter protein.	99.69
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.68
TIGR00891	405	2A0112 putative sialic acid transporter.	99.68
PRK10504	471	putative transporter; Provisional	99.68
PRK12382	392	putative transporter; Provisional	99.68
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.68
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.67
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.67
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.66
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.65
PRK05122	399	major facilitator superfamily transporter; Provisi	99.65
PRK12307	426	putative sialic acid transporter; Provisional	99.65
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.65
PRK11663	434	regulatory protein UhpC; Provisional	99.64
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.64
PLN00028	476	nitrate transmembrane transporter; Provisional	99.64
PRK10091	382	MFS transport protein AraJ; Provisional	99.64
PRK03893	496	putative sialic acid transporter; Provisional	99.63
TIGR00895	398	2A0115 benzoate transport.	99.62
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.62
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.62
PRK11043	401	putative transporter; Provisional	99.62
PRK03699	394	putative transporter; Provisional	99.62
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.61
PRK09874	408	drug efflux system protein MdtG; Provisional	99.6
TIGR00893	399	2A0114 d-galactonate transporter.	99.6
PRK09705	393	cynX putative cyanate transporter; Provisional	99.59
TIGR00805	633	oat sodium-independent organic anion transporter.	99.59
PRK10642	490	proline/glycine betaine transporter; Provisional	99.59
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.59
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.58
PRK10133	438	L-fucose transporter; Provisional	99.58
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.57
PRK10642	490	proline/glycine betaine transporter; Provisional	99.57
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.57
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.56
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.56
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.56
PRK10489	417	enterobactin exporter EntS; Provisional	99.55
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.55
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.55
PRK03633	381	putative MFS family transporter protein; Provision	99.54
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.54
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.53
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.52
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.52
PRK09952	438	shikimate transporter; Provisional	99.52
PRK15075	434	citrate-proton symporter; Provisional	99.52
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.51
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.51
PRK15011	393	sugar efflux transporter B; Provisional	99.51
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.5
PRK15011	393	sugar efflux transporter B; Provisional	99.49
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.49
PRK09528	420	lacY galactoside permease; Reviewed	99.48
PRK03699	394	putative transporter; Provisional	99.48
TIGR00898	505	2A0119 cation transport protein.	99.48
PRK09952	438	shikimate transporter; Provisional	99.48
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.47
PRK05122	399	major facilitator superfamily transporter; Provisi	99.47
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.47
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.47
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.47
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.46
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.45
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.45
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.44
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.44
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.43
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.43
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.42
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.42
PRK11010	491	ampG muropeptide transporter; Validated	99.41
KOG0254	513	consensus Predicted transporter (major facilitator	99.41
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.41
TIGR00901	356	2A0125 AmpG-related permease.	99.41
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.4
PRK09874	408	drug efflux system protein MdtG; Provisional	99.4
PRK11663	434	regulatory protein UhpC; Provisional	99.4
PRK03893	496	putative sialic acid transporter; Provisional	99.4
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.4
PRK11902	402	ampG muropeptide transporter; Reviewed	99.39
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.38
TIGR00893	399	2A0114 d-galactonate transporter.	99.38
TIGR00891	405	2A0112 putative sialic acid transporter.	99.38
PRK09705	393	cynX putative cyanate transporter; Provisional	99.38
PRK15075	434	citrate-proton symporter; Provisional	99.38
PRK10489	417	enterobactin exporter EntS; Provisional	99.37
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.37
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.36
PRK03545	390	putative arabinose transporter; Provisional	99.36
PRK09528	420	lacY galactoside permease; Reviewed	99.36
PRK12382	392	putative transporter; Provisional	99.35
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.35
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.34
PTZ00207	591	hypothetical protein; Provisional	99.34
PRK03633	381	putative MFS family transporter protein; Provision	99.34
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.34
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.33
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.33
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.33
KOG0569	485	consensus Permease of the major facilitator superf	99.33
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.33
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.32
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.32
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.32
PRK11010	491	ampG muropeptide transporter; Validated	99.32
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.31
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.29
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.29
KOG2532	466	consensus Permease of the major facilitator superf	99.29
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.27
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.27
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.24
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.23
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.21
PRK12307	426	putative sialic acid transporter; Provisional	99.21
PLN00028	476	nitrate transmembrane transporter; Provisional	99.21
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.21
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.21
PRK09669	444	putative symporter YagG; Provisional	99.2
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.2
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.19
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.19
PRK10504	471	putative transporter; Provisional	99.18
TIGR00900	365	2A0121 H+ Antiporter protein.	99.18
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.17
PRK10091	382	MFS transport protein AraJ; Provisional	99.17
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.15
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.15
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.15
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.15
TIGR00895	398	2A0115 benzoate transport.	99.15
KOG2615	451	consensus Permease of the major facilitator superf	99.15
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.14
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.13
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.13
PRK10133	438	L-fucose transporter; Provisional	99.13
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.12
PRK10429	473	melibiose:sodium symporter; Provisional	99.11
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.1
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.1
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.09
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.08
PRK11462	460	putative transporter; Provisional	99.07
PRK11902	402	ampG muropeptide transporter; Reviewed	99.07
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.06
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.05
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.04
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.04
PRK09848	448	glucuronide transporter; Provisional	99.03
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.03
PRK10054	395	putative transporter; Provisional	99.03
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.02
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.01
TIGR00898	505	2A0119 cation transport protein.	99.0
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.99
PF13347	428	MFS_2: MFS/sugar transport protein	98.99
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.98
PF13347	428	MFS_2: MFS/sugar transport protein	98.98
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.97
PRK09848	448	glucuronide transporter; Provisional	98.96
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.96
PRK10429	473	melibiose:sodium symporter; Provisional	98.94
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.94
KOG2532	466	consensus Permease of the major facilitator superf	98.93
KOG0569	485	consensus Permease of the major facilitator superf	98.92
KOG2533	495	consensus Permease of the major facilitator superf	98.91
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.89
PRK11043	401	putative transporter; Provisional	98.89
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.88
TIGR00901	356	2A0125 AmpG-related permease.	98.88
PRK09669	444	putative symporter YagG; Provisional	98.88
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.87
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.85
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.85
KOG2325	488	consensus Predicted transporter/transmembrane prot	98.8
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.79
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.79
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.78
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.77
COG2211	467	MelB Na+/melibiose symporter and related transport	98.76
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.7
PRK11462	460	putative transporter; Provisional	98.69
COG2211	467	MelB Na+/melibiose symporter and related transport	98.68
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.68
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.65
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.65
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.61
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.59
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.58
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.52
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.45
COG0477	338	ProP Permeases of the major facilitator superfamil	98.43
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	98.42
KOG3626	735	consensus Organic anion transporter [Secondary met	98.41
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.4
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.39
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.36
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.31
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.31
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.31
KOG2563	480	consensus Permease of the major facilitator superf	98.25
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.25
KOG2533	495	consensus Permease of the major facilitator superf	98.23
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.12
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.09
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.08
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.05
KOG0254	513	consensus Predicted transporter (major facilitator	98.03
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.0
PTZ00207	591	hypothetical protein; Provisional	97.96
PF12832	77	MFS_1_like: MFS_1 like family	97.87
TIGR00805	633	oat sodium-independent organic anion transporter.	97.85
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	97.83
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.82
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.8
KOG3762	618	consensus Predicted transporter [General function	97.74
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	97.54
PRK03612	521	spermidine synthase; Provisional	97.52
KOG0637	498	consensus Sucrose transporter and related proteins	97.49
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	97.46
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	97.35
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	97.34
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	97.26
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.24
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	97.11
KOG2563	480	consensus Permease of the major facilitator superf	97.04
COG2270	438	Permeases of the major facilitator superfamily [Ge	96.97
KOG2615	451	consensus Permease of the major facilitator superf	96.95
KOG2816	463	consensus Predicted transporter ADD1 (major facili	96.93
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	96.68
KOG3626	735	consensus Organic anion transporter [Secondary met	96.56
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	96.43
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	96.31
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	96.24
KOG3098	461	consensus Uncharacterized conserved protein [Funct	96.16
KOG3098	461	consensus Uncharacterized conserved protein [Funct	96.15
KOG1330	493	consensus Sugar transporter/spinster transmembrane	95.92
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	95.87
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	95.68
KOG3762	618	consensus Predicted transporter [General function	95.4
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	95.39
KOG2325	488	consensus Predicted transporter/transmembrane prot	94.96
KOG3097	390	consensus Predicted membrane protein [Function unk	93.73
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	93.7
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	91.34
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	91.16
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	90.92
COG3202	509	ATP/ADP translocase [Energy production and convers	90.75
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	90.1
PRK10263	1355	DNA translocase FtsK; Provisional	89.85
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	88.06
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	85.51
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	82.86
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	82.85
KOG4112	101	consensus Signal peptidase subunit [Intracellular	82.37
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	81.85
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	81.78

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=100.00  E-value=9.3e-48  Score=390.32  Aligned_cols=321  Identities=45%  Similarity=0.724  Sum_probs=289.6

Q ss_pred             CCccccCCCCCCCcc---cCCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 016902           49 TTPVNVHGKPIADLS---KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLG  125 (380)
Q Consensus        49 ~~~~~~~~~p~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~  125 (380)
                      .+..|+++.+. .+.   ++++|+++.++++.+.++++++||+..|++.|++..+|.+...++..++.|.+..++.|+++
T Consensus        15 ~~~~d~~~~~~-~~~~~~~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g   93 (571)
T KOG1237|consen   15 FTSVDYRGPLL-GSSIAFKTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLG   93 (571)
T ss_pred             cceeeccCCcc-cccccceechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHH
Confidence            35678887777 665   88999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchh
Q 016902          126 GFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIR  205 (380)
Q Consensus       126 g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~  205 (380)
                      |+++|.|+||++++.++++++++|+.++++++.+|.+.|.  .|.. ......|..++..+...++.+++++++|.|+.+
T Consensus        94 ~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~--~~~~-~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r  170 (571)
T KOG1237|consen   94 AFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPF--MCKF-KPGGNVCESPSKLQLAVLYGALYLIALGAGGIR  170 (571)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc--cccC-CCCCCcccCcchHHHHHHHHHHHHheeccCCCC
Confidence            9999999999999999999999999999999999999987  6511 111336899999999999999999999999999


Q ss_pred             hhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHhhcccccc
Q 016902          206 PCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRH  285 (380)
Q Consensus       206 ~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~~~~  285 (380)
                      +|+.++++||||+.++++++.+.++|||||+..++|.+++.++..|+|++.||.++|.++++++++++++|+.+.+.|++
T Consensus       171 ~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~  250 (571)
T KOG1237|consen  171 PCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRY  250 (571)
T ss_pred             CcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEe
Confidence            99999999999998888888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCccchHHHHHHHHHhhcccccCccccccccccCCCCccccCCCcccCCCCcccchhhhhhcccCC---CCCCCcc
Q 016902          286 RLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDV---INPSPWK  362 (380)
Q Consensus       286 ~~~~~~~~~~~~~v~~~a~~~r~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~---~~~~~w~  362 (380)
                      ++|.++|++++++|+++++|||+..+|.+++. ++.      .........+++++|++|||+++.+++.   ...+|||
T Consensus       251 ~~p~gsp~t~i~~Vlvaa~~k~~~~~~~~~~~-~~~------~~~~~~~~~~t~~f~~l~kaa~~~~~~~~~~~~~~~w~  323 (571)
T KOG1237|consen  251 KKPRGSPKTRIGQVLVAAAFKRKAVVSLDPEE-LYY------DCTDSVAIEGTKPFRFLDKAALKTSDDLKDGLDANPWR  323 (571)
T ss_pred             eCCCCCchhHHHHHHHHHHHHHhccCCCcchh-ccc------cccccccccCCcccchhhHhhccCCcccccccccCCcc
Confidence            99999999999999999999999999988665 311      1122344567899999999999865432   2468999


Q ss_pred             cCCchhHHHHHHHHhcCC
Q 016902          363 LCTVTQVEEVKTLVRHTQ  380 (380)
Q Consensus       363 l~t~~qVE~~K~~lr~l~  380 (380)
                      +||++||||+|+++|++|
T Consensus       324 lct~~~Vee~K~~lr~~P  341 (571)
T KOG1237|consen  324 LCTVTQVEEVKAVLRLLP  341 (571)
T ss_pred             CCCceehhhhhhhhhhhH
Confidence            999999999999999987

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=99.96  E-value=1.9e-28  Score=253.34  Aligned_cols=238  Identities=27%  Similarity=0.506  Sum_probs=202.0

Q ss_pred             HHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccC
Q 016902           83 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF  162 (380)
Q Consensus        83 ~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l  162 (380)
                      ++|||+.+++..|+++.+|++.+.+..+.+.+....++.|++||+++|+++||+++++++.+++.+|.+++++++..+..
T Consensus         1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~   80 (654)
T TIGR00926         1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSG   80 (654)
T ss_pred             CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccc
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999885432111


Q ss_pred             CCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHH
Q 016902          163 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA  242 (380)
Q Consensus       163 ~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~  242 (380)
                      .+                    .+...++++++++++|.|++++|+.++++|||++++   ++++.++|+|+|+++|+|+
T Consensus        81 ~~--------------------~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~---~~~~~s~F~~fY~~iNiGS  137 (654)
T TIGR00926        81 HP--------------------LHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQ---LSLRSRFFSFFYFAINAGS  137 (654)
T ss_pred             cc--------------------hHHHHHHHHHHHHHhhccccccCchhhhHhhcCccc---hhHHHHHHHHHHHHHHHHH
Confidence            11                    234557889999999999999999999999998543   3458999999999999999


Q ss_pred             HHHHHHHHHhhhcc-------hhhHHHHHHHHHHHHHHHHHHhhcccccccCCCCCccchHHHHHHHHHhhcccccCccc
Q 016902          243 IVAFTLVVYIQMEH-------GWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSE  315 (380)
Q Consensus       243 ~i~~~i~~~i~~~~-------gw~~~f~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~r~~~~p~~~  315 (380)
                      ++++++.+++++++       +|.++|++++++++++++++..+++.|++.+|.++++.++.++++.++|+|+...+.+ 
T Consensus       138 lis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~~-  216 (654)
T TIGR00926       138 LISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSEH-  216 (654)
T ss_pred             HHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCcc-
Confidence            99999999998543       6999999999999999999999999999989999999999999999988764322110 


Q ss_pred             cccccccCCCCccccCCCcccCCCCcccchhhhhhcccCCCCCCCcccCCchhHHHHHHHHhcCC
Q 016902          316 LIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRHTQ  380 (380)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~w~l~t~~qVE~~K~~lr~l~  380 (380)
                                             ...+|+|+++.+             ..+++|||+|+++|++|
T Consensus       217 -----------------------~~~~~ld~a~~~-------------~~~~~V~evkrll~il~  245 (654)
T TIGR00926       217 -----------------------WPLHWLDYAKDK-------------HDIRMIRSTKRLLRVLV  245 (654)
T ss_pred             -----------------------cchhHHHHhccc-------------cccchHHHHHHHHHHHH
Confidence                                   013678877653             24578999999999864

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.94  E-value=9.1e-26  Score=220.37  Aligned_cols=192  Identities=21%  Similarity=0.395  Sum_probs=178.7

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHH
Q 016902           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMH----KSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA  140 (380)
Q Consensus        65 ~~~~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~----~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~  140 (380)
                      -+++|.++.++.+|+.|+++|||+...+..|++.+++    ++.+++..+.+.|....++.+++|||++||++|+|+++.
T Consensus        17 f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~   96 (498)
T COG3104          17 FGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIV   96 (498)
T ss_pred             CCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHH
Confidence            4467789999999999999999999999999999999    999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCC
Q 016902          141 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS  220 (380)
Q Consensus       141 i~~~l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~  220 (380)
                      ++.+++.+|.++++.+..                          .....+++++.++++|.|++++|...+++|++++++
T Consensus        97 lGail~~iGh~~L~~~~~--------------------------~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~D  150 (498)
T COG3104          97 LGAILMAIGHLVLAISSV--------------------------SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDD  150 (498)
T ss_pred             HHHHHHHHHHHHHhcccc--------------------------ccccHHHHHHHHHHhccccccccHHHHHHHhcCCCC
Confidence            999999999999987520                          135568999999999999999999999999999988


Q ss_pred             chhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHhhccccccc
Q 016902          221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR  286 (380)
Q Consensus       221 ~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~~~~~  286 (380)
                      +.    |..+|+++|++.|+|++++|.+.+++.+++||..+|.+.++.+.++++.+++++|.+...
T Consensus       151 pr----rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~  212 (498)
T COG3104         151 PR----RDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGI  212 (498)
T ss_pred             cc----cCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCC
Confidence            65    899999999999999999999999999999999999999999999999999999887654

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.92  E-value=2e-23  Score=211.32  Aligned_cols=190  Identities=17%  Similarity=0.304  Sum_probs=168.3

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 016902           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (380)
Q Consensus        65 ~~~~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~  144 (380)
                      +++||.++.+++.+++|++++|++..+++.|+++++|++..+++++++.+.+..++.++++|+++||++|||++++++.+
T Consensus        10 ~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~   89 (489)
T PRK10207         10 LQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAI   89 (489)
T ss_pred             hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999995599999999999


Q ss_pred             HHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhh
Q 016902          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (380)
Q Consensus       145 l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~  224 (380)
                      ++.+|.++++++..                           ....++++++++++|.|..+++..++++|+||++++   
T Consensus        90 ~~~~g~~~~~~~~~---------------------------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~---  139 (489)
T PRK10207         90 VLAIGYFMTGMSLL---------------------------KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDP---  139 (489)
T ss_pred             HHHHHHHHHHHhcc---------------------------chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCch---
Confidence            99999998887511                           123466789999999999999999999999987652   


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHhhcccccc
Q 016902          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRH  285 (380)
Q Consensus       225 ~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~~~~  285 (380)
                       +|.+.++++|++.|+|+.++|.+++++.++.||++.|+++.+.+.++++.+...++.+++
T Consensus       140 -~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~  199 (489)
T PRK10207        140 -RLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKD  199 (489)
T ss_pred             -hhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcc
Confidence             267889999999999999999999999999999999999887777777777777666554

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.90  E-value=4.8e-22  Score=200.68  Aligned_cols=193  Identities=18%  Similarity=0.249  Sum_probs=169.2

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 016902           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYV--MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIF  142 (380)
Q Consensus        65 ~~~~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~--~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~  142 (380)
                      .++.+.++.+++.++++++++|++.++++.|++++  +|++..+++.+.+.+.++.+++++++|+++||++|||++++++
T Consensus         6 ~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~   85 (475)
T TIGR00924         6 FGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLG   85 (475)
T ss_pred             cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHH
Confidence            34566788999999999999999999999999988  9999999999999999999999999999999955999999999


Q ss_pred             HHHHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCch
Q 016902          143 TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD  222 (380)
Q Consensus       143 ~~l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~  222 (380)
                      .+++.++.++++++                            .+...+++++++.++|.|+..++..++++|+++++++ 
T Consensus        86 ~~~~~~g~~~~~~~----------------------------~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~-  136 (475)
T TIGR00924        86 GIVLMLGHFMLAMS----------------------------IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDM-  136 (475)
T ss_pred             HHHHHHHHHHHHhc----------------------------ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCc-
Confidence            99999999887764                            2345677888999999999999999999999986542 


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHhhcccccccCC
Q 016902          223 YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLP  288 (380)
Q Consensus       223 ~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~~~~~~~  288 (380)
                        .+|+++++++|++.++|+++|+.+++++.++.||++.|+++++.+++++++++..++.+++.++
T Consensus       137 --~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~  200 (475)
T TIGR00924       137 --PRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGS  200 (475)
T ss_pred             --ccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCC
Confidence              1278899999999999999999999999999999999999888887777777777766655443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.88  E-value=3.3e-21  Score=193.57  Aligned_cols=189  Identities=20%  Similarity=0.341  Sum_probs=164.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 016902           66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI  145 (380)
Q Consensus        66 ~~~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l  145 (380)
                      ++++.++.+++.++.+++++|++...++.|+++.+|++..+++.+.+.+.+..+++++++|+++||++|||++++++.++
T Consensus         6 ~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il   85 (493)
T PRK15462          6 SQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALL   85 (493)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHH
Confidence            46778999999999999999999999999999999999999999999999999999999999999988999999999999


Q ss_pred             HHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhh
Q 016902          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (380)
Q Consensus       146 ~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~  225 (380)
                      ..+|.+++....                           .....+++++.+.++|.|..+++..++++|+||++++.   
T Consensus        86 ~~lg~lll~~~~---------------------------~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~---  135 (493)
T PRK15462         86 MAIGHVVLGASE---------------------------IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPR---  135 (493)
T ss_pred             HHHHHHHHHHhh---------------------------cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcc---
Confidence            999987665421                           11233556666777888888999999999999976432   


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHhhcccccc
Q 016902          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRH  285 (380)
Q Consensus       226 ~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~~~~  285 (380)
                       |.++++++|...++|++++|.+.+++.++.||+++|+++++.++++++.++.+++.+.+
T Consensus       136 -R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~  194 (493)
T PRK15462        136 -RDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTH  194 (493)
T ss_pred             -ccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence             89999999999999999999999999999999999999888888888887777666543

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.86  E-value=3e-20  Score=188.81  Aligned_cols=189  Identities=21%  Similarity=0.345  Sum_probs=161.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 016902           66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI  145 (380)
Q Consensus        66 ~~~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l  145 (380)
                      ++.+.++.+++.++++++++|++..+++.|+++++|++..+++...+.+.+..+..++++|+++||++|||++++++.++
T Consensus        18 ~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~   97 (500)
T PRK09584         18 KQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIV   97 (500)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence            44566889999999999999999999999999999999999998888888888888889999999955999999999999


Q ss_pred             HHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhh
Q 016902          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (380)
Q Consensus       146 ~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~  225 (380)
                      +.++.++++++.                           .....++++++++++|.|...++..++++|+||++++    
T Consensus        98 ~~ig~~l~~~~~---------------------------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~----  146 (500)
T PRK09584         98 LAIGYALVAWSG---------------------------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDP----  146 (500)
T ss_pred             HHHHHHHHHHhc---------------------------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCch----
Confidence            999988877641                           1244567788899999999999999999999986542    


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHhhcccccc
Q 016902          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRH  285 (380)
Q Consensus       226 ~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~~~~  285 (380)
                      ++...++++|++.++|+.++|.+++++.++.||++.|++.++.++++++.++..++.++.
T Consensus       147 ~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~  206 (500)
T PRK09584        147 RLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQ  206 (500)
T ss_pred             hhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhcc
Confidence            256688999999999999999999999999999999999888777777766665554443

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=99.86  E-value=3.2e-22  Score=195.80  Aligned_cols=212  Identities=36%  Similarity=0.549  Sum_probs=149.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhcc
Q 016902          136 YWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQ  215 (380)
Q Consensus       136 ~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~  215 (380)
                      +|+++++.+++++|.+++++++..+...                   ++.+...++++++++++|.|+.++|+.++++||
T Consensus         1 yktI~~g~~~~~~G~~ll~l~~~~~~~~-------------------~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq   61 (372)
T PF00854_consen    1 YKTILLGSIVYLLGHVLLTLSAIPPSLP-------------------SGIQLGLFYIGLALIAVGTGGIKPNISPFGADQ   61 (372)
T ss_dssp             HHHHHHHHHHHHHHHHH--HHHTSSSC-------------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHC
T ss_pred             CHhhhHHHHHHHHHHHHhHHHHhcchhh-------------------hhHHHHHHHHHHHHHHhccccccccHHHHHHHH
Confidence            6899999999999999999887644331                   124677899999999999999999999999999


Q ss_pred             CCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHhhccccccc-CCCCCccc
Q 016902          216 FDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR-LPGGSPLT  294 (380)
Q Consensus       216 f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~  294 (380)
                      +++++   +.+|.++|+|||++.|+|+++++++.+|+++++||.++|+++++.+++++++++.+++.|++. +|.++++.
T Consensus        62 ~~~~~---~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~  138 (372)
T PF00854_consen   62 YDEDD---DSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLT  138 (372)
T ss_dssp             SSTTT---TTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S
T ss_pred             hcccc---hhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccc
Confidence            99764   334999999999999999999999999999999999999999999999999999999999988 78889998


Q ss_pred             h-HHHHHHHHHhhcccccCccccccccccCCCCccccCCCcccCCCCcccchhhhhhcccCCCCCCCcc-cCCchhHHHH
Q 016902          295 R-VAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWK-LCTVTQVEEV  372 (380)
Q Consensus       295 ~-~~~v~~~a~~~r~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~w~-l~t~~qVE~~  372 (380)
                      + ...++.++.+++....|.+..+ +++......      +..........+ +...+...   ...|. .|++++||++
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~  207 (372)
T PF00854_consen  139 NFIKLVLVAAFKKRKLAVPKGSSW-LDWALFQYS------ERSIFGIIVFIR-AAVIFFPE---IFFWALFCQVQRVEEL  207 (372)
T ss_dssp             --SHHHHHHHHHHHCCCH-HHHHH-HHHHHHHHC------CCCCCCCCCHHH-HHHHHCCC---HHHHTTTSSTTTHHHC
T ss_pred             hhHHHHHHHHHHHhhcccccchHH-HHHhhhhhh------hhhhhhhhhhcc-chhhhhhh---hhhcccCCccceeeee
Confidence            8 7788888888888888754443 332211000      000111222222 22222111   12233 2899999999


Q ss_pred             HHHHhcCC
Q 016902          373 KTLVRHTQ  380 (380)
Q Consensus       373 K~~lr~l~  380 (380)
                      |.++|++|
T Consensus       208 k~~~~~~~  215 (372)
T PF00854_consen  208 KALIRFLP  215 (372)
T ss_dssp             CHHHCHHH
T ss_pred             eeeeeccc
Confidence            99998764

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.74  E-value=4.9e-16  Score=152.69  Aligned_cols=178  Identities=13%  Similarity=0.125  Sum_probs=145.5

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 016902           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (380)
Q Consensus        65 ~~~~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~  144 (380)
                      .++|..++.+.+..++.....+. ...+...+.+++|.+..+.++..+.+.++..++.++.|+++||+ |||+++.++.+
T Consensus         5 ~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~   82 (390)
T PRK03545          5 KVAWLRVVTLALAAFIFNTTEFV-PVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV-ERRKLLIGLFV   82 (390)
T ss_pred             ccchHHHHHHHHHHHHHHhHHHH-HHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHH
Confidence            34565556555555554444432 22334567889999999999999999999999999999999998 99999999999


Q ss_pred             HHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhh
Q 016902          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (380)
Q Consensus       145 l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~  224 (380)
                      ++.++.+++.++                            .+...++++|++.|++.+...+...++..|.+|+++    
T Consensus        83 ~~~~~~~~~~~~----------------------------~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~----  130 (390)
T PRK03545         83 LFIASHVLSALA----------------------------WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK----  130 (390)
T ss_pred             HHHHHHHHHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh----
Confidence            999988877764                            357788899999999998888889999999999776    


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHh
Q 016902          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (380)
Q Consensus       225 ~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~~  278 (380)
                        |++.++++..+.++|..+++.+++++.+..||++.|++.+++.++..+..+.
T Consensus       131 --r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~  182 (390)
T PRK03545        131 --KAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIK  182 (390)
T ss_pred             --hhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Confidence              9999999999999999999999999988899999999887776655444333

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.73  E-value=6.6e-16  Score=153.33  Aligned_cols=180  Identities=16%  Similarity=0.085  Sum_probs=140.2

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCccccccc
Q 016902           95 FMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQ  174 (380)
Q Consensus        95 yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~  174 (380)
                      .+.+++|.+...+++.++++.++..++.+++|+++||+ |||++++++.+++.++.+++.++                  
T Consensus        41 ~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a------------------  101 (413)
T PRK15403         41 NVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI-GRRPVLITGALIFTLACAATLFT------------------  101 (413)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-CchHHHHHHHHHHHHHHHHHHHc------------------
Confidence            46789999999999999999999999999999999998 99999999999998888877764                  


Q ss_pred             ccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016902          175 LLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM  254 (380)
Q Consensus       175 ~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~  254 (380)
                                .+...++++|++.|++.+...+...++..|.+++++      +++.++++.....+|..++|.+++++.+
T Consensus       102 ----------~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~lg~~l~~  165 (413)
T PRK15403        102 ----------TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPIIGPLSGAALMH  165 (413)
T ss_pred             ----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      357788999999999988766777788899999776      8888999999999999999999999988


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHhhcccccccCCCCCccchHHHHHHHHHhhccc
Q 016902          255 EHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHA  309 (380)
Q Consensus       255 ~~gw~~~f~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~r~~  309 (380)
                      ..||++.|++.+++.+++++..+...|+....+.+........+-+...+|||+.
T Consensus       166 ~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~ll~~~~~  220 (413)
T PRK15403        166 FVHWKVLFAIIAVMGLIAFVGLLLAMPETVKRGAVPFSAKSVLRDFRNVFRNRLF  220 (413)
T ss_pred             hcCHHHHHHHHHHHHHHHHHHHHHhCCCCccccCCCCChHHHHHHHHHHHcCHHH
Confidence            8899999998887766665543333333211111111222334444555566554

>PRK10054 putative transporter; Provisional

Probab=99.72  E-value=9.7e-16  Score=151.22  Aligned_cols=173  Identities=15%  Similarity=0.141  Sum_probs=145.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 016902           68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL  147 (380)
Q Consensus        68 ~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~  147 (380)
                      .|..+.+++..++..++++.+...++.|+++++|++..+.+++.+.+.++..++.++.|+++||+ |||++++++.++..
T Consensus         6 ~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~k~~~~~~~~~~~   84 (395)
T PRK10054          6 RRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKF-DKKRYMLLAITAFA   84 (395)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchhHHHHHHHHH
Confidence            44567777788888888888888999999999999999999999999999999999999999997 99999999998888


Q ss_pred             HHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhh
Q 016902          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (380)
Q Consensus       148 lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r  227 (380)
                      ++.+++.++                            .+...+++++.+.+.+.+...++..++.+|.+++++      |
T Consensus        85 ~~~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~  130 (395)
T PRK10054         85 SGFIAIPLV----------------------------NNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS------K  130 (395)
T ss_pred             HHHHHHHHH----------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH------H
Confidence            887766654                            245556666667777777777888899999998766      9


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHH
Q 016902          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF  276 (380)
Q Consensus       228 ~~~~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~  276 (380)
                      ++.+++.+...++|..++|.+++++.+ .+|+..|++.+++.++++++.
T Consensus       131 ~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~  178 (395)
T PRK10054        131 TKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFI  178 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998875 689999998877776665443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.72  E-value=7e-16  Score=153.09  Aligned_cols=178  Identities=15%  Similarity=0.071  Sum_probs=147.1

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 016902           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (380)
Q Consensus        65 ~~~~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~  144 (380)
                      +.+|+..+.+.+..+++.+....+ .....++++++|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~   81 (412)
T TIGR02332         4 KLFRRLIIFLFILFIFSFLDRINI-GFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII-GARRWIAGIMV   81 (412)
T ss_pred             eehhHHHHHHHHHHHHHHhhhhhH-HHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-ChHHHHHHHHH
Confidence            345666666666666655555434 3455689999999999999999999999999999999999998 99999999999


Q ss_pred             HHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhh
Q 016902          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (380)
Q Consensus       145 l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~  224 (380)
                      ++.++.+++.++                            .+...++++|++.|++.++..+....+.+|.+|+++    
T Consensus        82 ~~~~~~~~~~~~----------------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~----  129 (412)
T TIGR02332        82 LWGIASTATMFA----------------------------TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF----  129 (412)
T ss_pred             HHHHHHHHHHHh----------------------------cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH----
Confidence            999998888765                            356778999999999999999988899999999766    


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHhhh------cchhhHHHHHHHHHHHHHHHHHHh
Q 016902          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQM------EHGWGSAFGALAIAMGISNMLFFI  278 (380)
Q Consensus       225 ~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~------~~gw~~~f~i~~~~~~~~~i~~~~  278 (380)
                        |+...++++.+..+|..+++.+++++.+      ..|||+.|++.++..++..++.++
T Consensus       130 --rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~  187 (412)
T TIGR02332       130 --RARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWF  187 (412)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhh
Confidence              9999999999999999999999998864      368999999877666554444333

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.71  E-value=1.5e-17  Score=161.14  Aligned_cols=210  Identities=18%  Similarity=0.194  Sum_probs=171.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 016902           66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI  145 (380)
Q Consensus        66 ~~~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l  145 (380)
                      ..++.+..+++..+++++--|.+.. ...-+++.+|+++...+++.+.+.+...+..++.|+|+||| .|++++.++..+
T Consensus        30 ~~~~~l~il~~vnlmny~Dr~~iag-v~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-NR~~v~~vG~~i  107 (493)
T KOG1330|consen   30 SPTLTLVILCLVNLMNYADRYTIAG-VLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-NRKRVIAVGIFI  107 (493)
T ss_pred             cchHHHHHHHHHHHHHHhhhhhhhh-hhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-CcceEEeeHHHH
Confidence            4455677888888888888887766 34568889999999999999999999999999999999999 999999999999


Q ss_pred             HHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhh
Q 016902          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (380)
Q Consensus       146 ~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~  225 (380)
                      ..+..+..+++                            ...+++.+.|.+.|+|.+...+..+++++|.|+++.     
T Consensus       108 W~~Av~~~~fs----------------------------~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~-----  154 (493)
T KOG1330|consen  108 WTLAVFASGFS----------------------------NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK-----  154 (493)
T ss_pred             HHHHHHHHHHH----------------------------HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchh-----
Confidence            99988888775                            468889999999999999999999999999999988     


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHhhhcch-hhHHHHHHHHHHHHHHHHHHhhcccccc-cCC--C-----CCccchH
Q 016902          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIGTPLYRH-RLP--G-----GSPLTRV  296 (380)
Q Consensus       226 ~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g-w~~~f~i~~~~~~~~~i~~~~~~~~~~~-~~~--~-----~~~~~~~  296 (380)
                       |+..++|+|+++.+|..+|.+++.++.+..+ |||+|++.+++.++..++.++..+..++ ..+  .     ..+.+..
T Consensus       155 -Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~~~~~~ts~  233 (493)
T KOG1330|consen  155 -RSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDGENKMVKPFTSV  233 (493)
T ss_pred             -hhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCcccccccccccCCcCCCCccch
Confidence             9999999999999999999999999987766 9999998888877666655444433221 111  1     1345566


Q ss_pred             HHHHHHHHhhccccc
Q 016902          297 AQVLVAAFRKRHAAF  311 (380)
Q Consensus       297 ~~v~~~a~~~r~~~~  311 (380)
                      .+=++...|++....
T Consensus       234 ~kDl~~l~~~~v~v~  248 (493)
T KOG1330|consen  234 WKDLKVLAKIKVFVL  248 (493)
T ss_pred             HHHHHHHHccCceee
Confidence            665555555544433

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.71  E-value=1.4e-15  Score=154.46  Aligned_cols=177  Identities=14%  Similarity=0.044  Sum_probs=147.7

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 016902           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY  146 (380)
Q Consensus        67 ~~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~  146 (380)
                      +|..+..+++..++..+....+...++ .+.+++|.+..+.+++.+.|.++..++.+++|+++|++ |||++++++.+++
T Consensus         4 ~~~~~~~~~~~~~~~~ld~tiv~~a~p-~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~-Grk~~l~~~~~~~   81 (495)
T PRK14995          4 QWLTLVIIVLVYIPVAIDATVLHVAAP-TLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRI-GFKRLLMLGGTLF   81 (495)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHH
Confidence            466667777777777777665555544 56789999999999999999999999999999999998 9999999999999


Q ss_pred             HHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCC-CCCchhhh
Q 016902          147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD-ERSKDYKT  225 (380)
Q Consensus       147 ~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~-~~~~~~~~  225 (380)
                      .++.+++..+                            .+...++++|++.|+|.++..+.....+.+.++ +++     
T Consensus        82 ~~~~~~~~~a----------------------------~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~-----  128 (495)
T PRK14995         82 GLASLAAAFS----------------------------PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQ-----  128 (495)
T ss_pred             HHHHHHHHHc----------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH-----
Confidence            9999888765                            357789999999999999988888888878774 344     


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHhh
Q 016902          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG  279 (380)
Q Consensus       226 ~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~~~  279 (380)
                       |+.+++++.....+|..+||.+++++.++.||||.|++...+.++.+++.+..
T Consensus       129 -r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~  181 (495)
T PRK14995        129 -RNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARY  181 (495)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHh
Confidence             99999999999999999999999999999999999998766655555444443

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.70  E-value=1.4e-15  Score=145.82  Aligned_cols=165  Identities=19%  Similarity=0.237  Sum_probs=140.7

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHh
Q 016902           76 GNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITL  155 (380)
Q Consensus        76 ~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l  155 (380)
                      +..++..+....+...++.++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||++++++.++..++.+++.+
T Consensus         3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~   81 (352)
T PF07690_consen    3 LAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF-GRRRVLIIGLLLFALGSLLLAF   81 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCeeeEeehhhhhhhHHHHhhh
Confidence            445555566555555555588899999999999999999999999999999999997 9999999999999998555554


Q ss_pred             hhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHH
Q 016902          156 CATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY  235 (380)
Q Consensus       156 ~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~  235 (380)
                      +                            .+...+++++++.|++.+...+...++++|.+++++      |+..+++++
T Consensus        82 ~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~  127 (352)
T PF07690_consen   82 A----------------------------SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE------RGRAFGILS  127 (352)
T ss_dssp             H----------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------HHHHHHHHH
T ss_pred             h----------------------------hhHHHHhhhccccccccccccccccccccccchhhh------hhhcccccc
Confidence            3                            134478999999999999999999999999999877      999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHH
Q 016902          236 LSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNML  275 (380)
Q Consensus       236 ~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~  275 (380)
                      ....+|..+++.+++++.+..+|++.|++.+++.++..++
T Consensus       128 ~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il  167 (352)
T PF07690_consen  128 AGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAIL  167 (352)
T ss_dssp             HHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHH
T ss_pred             chhhhhhhcccchhhhhhhccccccccccccchhhhhhhh
Confidence            9999999999999999998899999999988888777664

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.70  E-value=3.7e-15  Score=147.04  Aligned_cols=177  Identities=13%  Similarity=0.119  Sum_probs=147.3

Q ss_pred             ccCCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 016902           63 SKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIF  142 (380)
Q Consensus        63 ~~~~~~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~  142 (380)
                      .++..|+....+.+..++.....|.....++. +.+++|++..+.+..++.+..+..++.++.|+++||+ |||+.++++
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-grr~~~~~~   91 (394)
T PRK10213         14 ITRPNWSAVFSVAFCVACLIIVEFLPVSLLTP-MAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQAT-DRRYVVILF   91 (394)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcHHHHHHH
Confidence            34556776666666655555555555554544 5678999999999999999999999999999999998 999999999


Q ss_pred             HHHHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCch
Q 016902          143 TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD  222 (380)
Q Consensus       143 ~~l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~  222 (380)
                      .+++.++.+++.++                            .+...+++.|++.|++.|...+...++..|.+|+++  
T Consensus        92 ~~~~~~~~~~~~~~----------------------------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~--  141 (394)
T PRK10213         92 AVLLTLSCLLVSFA----------------------------NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT--  141 (394)
T ss_pred             HHHHHHHHHHHHHH----------------------------ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH--
Confidence            99999888777664                            357889999999999999999999999999999777  


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHH
Q 016902          223 YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNML  275 (380)
Q Consensus       223 ~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~  275 (380)
                          |+.+.+++..+.++|..++|.+++++.+..||++.|++.+++.++..+.
T Consensus       142 ----~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~  190 (394)
T PRK10213        142 ----VPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFW  190 (394)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Confidence                9999999999999999999999999999899999999877655544433

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.69  E-value=5.2e-15  Score=143.32  Aligned_cols=181  Identities=13%  Similarity=0.142  Sum_probs=162.7

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 016902           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (380)
Q Consensus        65 ~~~~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~  144 (380)
                      +..|..++.+.+..|+-..+-+.... +.+-+.+++|.+...++..++.|..+..++.++...++||+ .||+.++....
T Consensus         9 ~~~~~~l~aLa~~~F~igttEfv~~g-LLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~-~Rr~lLl~~l~   86 (394)
T COG2814           9 KPMWLALLALALAAFAIGTTEFVPVG-LLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL-ERRRLLLGLLA   86 (394)
T ss_pred             ccchHHHHHHHHHHHHHHhHHHHHHh-chHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc-chHHHHHHHHH
Confidence            44566677777777777777775555 45668889999999999999999999999999999999998 99999999999


Q ss_pred             HHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhh
Q 016902          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (380)
Q Consensus       145 l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~  224 (380)
                      +++++.++.+++                            +++..+.++|++.|+..|.+.+...+..++..|+++    
T Consensus        87 lFi~~n~l~alA----------------------------p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~----  134 (394)
T COG2814          87 LFIVSNLLSALA----------------------------PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGK----  134 (394)
T ss_pred             HHHHHHHHHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc----
Confidence            999999999997                            578999999999999999999999999999999988    


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHhhcc
Q 016902          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP  281 (380)
Q Consensus       225 ~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~~~~~  281 (380)
                        |+++.+..+.+..++..+|..++.++.+.+|||..|++.+++.+++++..+...|
T Consensus       135 --~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         135 --RGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             --hhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence              9999999999999999999999999999999999999988888888777766666

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.69  E-value=2.5e-15  Score=148.43  Aligned_cols=166  Identities=13%  Similarity=0.087  Sum_probs=133.3

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhh
Q 016902           77 NEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLC  156 (380)
Q Consensus        77 ~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~  156 (380)
                      .+++..+....+...++ .+.+++|.+..+.+...+.+.++..++.++.|+++||+ |||++++++.++..++.+++..+
T Consensus        21 ~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~   98 (406)
T PRK15402         21 FEFATYIANDMIQPGML-AVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-GRRPVMLAGVAFFILTCLAILLA   98 (406)
T ss_pred             HHHHHHhhhhhHhcchH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333444443 46678999999999999999999999999999999998 99999999998888887776654


Q ss_pred             hhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHH
Q 016902          157 ATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL  236 (380)
Q Consensus       157 ~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~  236 (380)
                                                  .+...+++.+++.|++.+...+...+.+.|.++++.      |.+.+++++.
T Consensus        99 ----------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~  144 (406)
T PRK15402         99 ----------------------------QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD------AIKITALMAN  144 (406)
T ss_pred             ----------------------------ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH------HHHHHHHHHH
Confidence                                        346678888999999988888888899999998776      7888888877


Q ss_pred             HHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHh
Q 016902          237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (380)
Q Consensus       237 ~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~~  278 (380)
                      ...+|..++|.+++++.+..+|++.|++.+++.+++.+..+.
T Consensus       145 ~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~  186 (406)
T PRK15402        145 VALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWR  186 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHH
Confidence            778899999999999988889999999877777666554443

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.69  E-value=4e-15  Score=144.91  Aligned_cols=178  Identities=19%  Similarity=0.177  Sum_probs=144.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 016902           68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL  147 (380)
Q Consensus        68 ~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~  147 (380)
                      ++.++.+....++..++...+... .+++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~   81 (385)
T TIGR00710         4 KAFALLLGCLSILGPLGIDMYLPA-FPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-GRRPVLLLGLFIFA   81 (385)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhccc-HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHHH
Confidence            344455555555555554444443 4567789999999999999999999999999999999998 99999999999888


Q ss_pred             HHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhh
Q 016902          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (380)
Q Consensus       148 lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r  227 (380)
                      ++.+++..+                            .+...+++++++.|++.+...+...++..|.+|+++      |
T Consensus        82 ~~~~~~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~  127 (385)
T TIGR00710        82 LSSLGLALS----------------------------NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE------L  127 (385)
T ss_pred             HHHHHHHHH----------------------------ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH------H
Confidence            888877654                            346678889999999999999999999999999776      9


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHhhcc
Q 016902          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP  281 (380)
Q Consensus       228 ~~~~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~~~~~  281 (380)
                      +..+++++....+|..+++.+++++.+..+|++.|++.+++.++..++.+...+
T Consensus       128 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (385)
T TIGR00710       128 SRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILP  181 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999999999999999999999988889999998877766655555444333

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.69  E-value=3.1e-15  Score=143.98  Aligned_cols=173  Identities=17%  Similarity=0.081  Sum_probs=140.5

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 016902           74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI  153 (380)
Q Consensus        74 i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l  153 (380)
                      ++...++..++.......++.|+. +++.+..+.+++.+.+.++..++.++.|+++||+ |||++++++.++..++.+++
T Consensus         4 l~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~~   81 (365)
T TIGR00900         4 LFAAQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADRY-DRKKVMIGADLIRAVLVAVL   81 (365)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-chhHHHHHHHHHHHHHHHHH
Confidence            344555555555545555566654 6899999999999999999999999999999998 99999999988888777776


Q ss_pred             HhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHH
Q 016902          154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF  233 (380)
Q Consensus       154 ~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~  233 (380)
                      .+....+                       ..+...+++++++.|++.+...++..++.+|.+++++      |++.+++
T Consensus        82 ~~~~~~~-----------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~  132 (365)
T TIGR00900        82 PFVALLG-----------------------GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ------LTQANSL  132 (365)
T ss_pred             HHHHHcC-----------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHhH
Confidence            6542110                       0257778899999999999999999999999999776      9999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHH
Q 016902          234 FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF  277 (380)
Q Consensus       234 ~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~  277 (380)
                      ++....+|..+++.+++++.+..||++.|++.++..+++.++.+
T Consensus       133 ~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  176 (365)
T TIGR00900       133 SQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIV  176 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999889999999887776665554443

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.68  E-value=7.4e-15  Score=145.18  Aligned_cols=169  Identities=15%  Similarity=0.203  Sum_probs=146.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 016902           72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT  151 (380)
Q Consensus        72 ~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~  151 (380)
                      ++++...++..++++.+.+.++.|+++++|++..+.+.+.+.+.+...+..+++|+++||+ |||+++.++.++..++.+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~-g~k~~l~~~~~~~~~~~~   91 (400)
T PRK11646         13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF-GAKPMIVTGMLMRAAGFA   91 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-CchHHHHHHHHHHHHHHH
Confidence            5666777888888888888999999999999999999999999999999999999999998 999999999999998888


Q ss_pred             HHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHH
Q 016902          152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF  231 (380)
Q Consensus       152 ~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~  231 (380)
                      ++...                            .+...+++++++.|++.+...+...++..|.+|+++      |++++
T Consensus        92 ~~~~~----------------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~a~  137 (400)
T PRK11646         92 TMAIA----------------------------HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ------RGRFF  137 (400)
T ss_pred             HHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHH
Confidence            77653                            246677888999999988888888999999999766      99999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHH
Q 016902          232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF  276 (380)
Q Consensus       232 ~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~  276 (380)
                      ++++...++|..++|.+++++. ..||++.|++.++..++..++.
T Consensus       138 ~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~  181 (400)
T PRK11646        138 SLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFN  181 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998 6799999998776665554443

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.68  E-value=8.1e-15  Score=143.44  Aligned_cols=174  Identities=13%  Similarity=0.212  Sum_probs=147.2

Q ss_pred             ccCCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 016902           63 SKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIF  142 (380)
Q Consensus        63 ~~~~~~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~  142 (380)
                      .++.+|+......+..++..+..+.+.. ....+++++|++..+.+++.+.+.++..++.++.|+++||+ |||++++++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~   83 (405)
T TIGR00891         6 LTRAQWNAFSAAWLGWLLDAFDFFLVAL-VLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY-GRRLPMVTS   83 (405)
T ss_pred             CCcccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHH
Confidence            4566788777777788887777765544 45677889999999999999999999999999999999998 999999999


Q ss_pred             HHHHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCch
Q 016902          143 TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD  222 (380)
Q Consensus       143 ~~l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~  222 (380)
                      .++..++.+++.++                            .+...+++++++.|++.++..+...++..|.+++++  
T Consensus        84 ~~~~~~~~~~~~~~----------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~--  133 (405)
T TIGR00891        84 IVLFSAGTLACGFA----------------------------PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL--  133 (405)
T ss_pred             HHHHHHHHHHHHHh----------------------------ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh--
Confidence            98888888777654                            346678889999999999999999999999999877  


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcch--hhHHHHHHHHHHHHH
Q 016902          223 YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG--WGSAFGALAIAMGIS  272 (380)
Q Consensus       223 ~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g--w~~~f~i~~~~~~~~  272 (380)
                          |+...++++.+..+|..+++.+.+.+.+..+  |++.|++.++..++.
T Consensus       134 ----~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~  181 (405)
T TIGR00891       134 ----RNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFA  181 (405)
T ss_pred             ----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence                9999999999999999999999988877665  999998765554443

>PRK10504 putative transporter; Provisional

Probab=99.68  E-value=5.3e-15  Score=148.88  Aligned_cols=176  Identities=12%  Similarity=0.024  Sum_probs=147.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 016902           68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL  147 (380)
Q Consensus        68 ~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~  147 (380)
                      .+..+.+.+..++..+..+.+...++.|. +++|.+..+.+++.+.+.++..++.+++|+++|++ |||++++++.+++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~   86 (471)
T PRK10504          9 RWQLWIVAFGFFMQSLDTTIVNTALPSMA-QSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-GVRNIFFTAIVLFT   86 (471)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHH
Confidence            34567777777888888877777776665 57999999999999999999999999999999998 99999999988888


Q ss_pred             HHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhh
Q 016902          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (380)
Q Consensus       148 lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r  227 (380)
                      ++.+++.++                            .+...+++++++.|+|.++..+...++..|.+|+++      |
T Consensus        87 ~~~~~~~~~----------------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~  132 (471)
T PRK10504         87 LGSLFCALS----------------------------GTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ------Y  132 (471)
T ss_pred             HHHHHHHHh----------------------------CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH------H
Confidence            877765553                            246678889999999999999999999999998665      8


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHhh
Q 016902          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG  279 (380)
Q Consensus       228 ~~~~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~~~  279 (380)
                      ++.+++++...++|..+++.+++++.+..||++.|++...+..+..++....
T Consensus       133 ~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~  184 (471)
T PRK10504        133 MAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLML  184 (471)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999998999999998776665555544443

>PRK12382 putative transporter; Provisional

Probab=99.68  E-value=7.3e-15  Score=144.31  Aligned_cols=172  Identities=13%  Similarity=0.026  Sum_probs=136.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 016902           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (380)
Q Consensus        71 ~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~  150 (380)
                      .+.+.+..++..+........++.|+.+++|++..+.+++.+.+.++..++.+++|+++||+ |||++++++.++..++.
T Consensus        17 ~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~   95 (392)
T PRK12382         17 LFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-GAKRSALQGMLACGLAG   95 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-cchHHHHHHHHHHHHHH
Confidence            44444555555555555566677789999999999999999999999999999999999998 99999999988777665


Q ss_pred             HHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhH
Q 016902          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (380)
Q Consensus       151 ~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~  230 (380)
                      +...+....+..                    ...+...+++++++.|+|.+...+...+++.|.+|+++      |+++
T Consensus        96 ~~~~~~~~~~~~--------------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~a  149 (392)
T PRK12382         96 LAYLLAAILPVS--------------------APFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH------SGKV  149 (392)
T ss_pred             HHHHhhhccccc--------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc------cchh
Confidence            544332211100                    00356778999999999999888888889999999777      9999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHH
Q 016902          231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAM  269 (380)
Q Consensus       231 ~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~  269 (380)
                      ++++..+.++|..+++.+++++.+..||++.+.+..+..
T Consensus       150 ~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~  188 (392)
T PRK12382        150 MSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLP  188 (392)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence            999999999999999999999988889998776654443

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.68  E-value=7.3e-15  Score=144.39  Aligned_cols=174  Identities=14%  Similarity=0.106  Sum_probs=140.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 016902           66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI  145 (380)
Q Consensus        66 ~~~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l  145 (380)
                      +.+|..+.+....++..+..+..... ..++.+++|++..+.+++.+.+.++..++.++.|+++||+ |||++++++.++
T Consensus         5 ~~~~~l~~~~~~~~~~~~~~~~~~p~-~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-grr~~~~~~~~~   82 (394)
T PRK11652          5 RNVNLLFMLVLLVAVGQMAQTIYVPA-IADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-GRRPVILVGMSI   82 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhcc-HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHH
Confidence            35666666666666666665544443 4456788999999999999999999999999999999998 999999999988


Q ss_pred             HHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhh
Q 016902          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (380)
Q Consensus       146 ~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~  225 (380)
                      ..++.+++..+                            .+...+++.+++.|++.+...+....+..|.++.++     
T Consensus        83 ~~~~~~~~~~~----------------------------~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-----  129 (394)
T PRK11652         83 FILGTLVALFA----------------------------HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ-----  129 (394)
T ss_pred             HHHHHHHHHHH----------------------------ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH-----
Confidence            88887776653                            346678889999999988877777788888887655     


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHH
Q 016902          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNML  275 (380)
Q Consensus       226 ~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~  275 (380)
                       ++...+++..+..+|..++|.+++++.+..||++.|++.+++.++..++
T Consensus       130 -~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~  178 (394)
T PRK11652        130 -LRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFS  178 (394)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHH
Confidence             8888889999999999999999999988889999999877665544333

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.67  E-value=8.1e-15  Score=144.48  Aligned_cols=176  Identities=17%  Similarity=0.170  Sum_probs=146.5

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 016902           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (380)
Q Consensus        65 ~~~~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~  144 (380)
                      +.+|..+....+..+++.+..+..... ...+.+++|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~   88 (406)
T PRK11551         11 SRLALTIGLCFLVALLEGLDLQSAGVA-APRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRI-GRKRILIVSVA   88 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHH
Confidence            456777777777777777776655444 4556778999999999999999999999999999999998 99999999998


Q ss_pred             HHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhh
Q 016902          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (380)
Q Consensus       145 l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~  224 (380)
                      +..++.+++.+.                            .+...+++.+++.|++.+...+...++.+|.+++++    
T Consensus        89 ~~~~~~~~~~~~----------------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~----  136 (406)
T PRK11551         89 LFGLFSLATAQA----------------------------WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL----  136 (406)
T ss_pred             HHHHHHHHHHHh----------------------------ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH----
Confidence            888777666553                            346678889999999999999999999999999777    


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHH
Q 016902          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF  276 (380)
Q Consensus       225 ~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~  276 (380)
                        |++.+++++....+|..+++.++.++.+..+|++.|++.+++.++..++.
T Consensus       137 --r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (406)
T PRK11551        137 --RGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLL  186 (406)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHH
Confidence              99999999999999999999998888888899999988776655444433

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.67  E-value=8.9e-15  Score=143.10  Aligned_cols=156  Identities=13%  Similarity=0.116  Sum_probs=123.0

Q ss_pred             HHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCCC
Q 016902           88 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD  167 (380)
Q Consensus        88 i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~~  167 (380)
                      ......+.+.+++|++..+.+++.+.+.+++.++.+++|+++||+ |||++++.+.+....+.+. ....          
T Consensus         9 ~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~-~~~~----------   76 (368)
T TIGR00903         9 TFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-FKRWFLFGSLATFAAAAGR-LLDP----------   76 (368)
T ss_pred             HHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHHH-HHHh----------
Confidence            344455677889999999999999999999999999999999998 9998876555544444322 2210          


Q ss_pred             cccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHH
Q 016902          168 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT  247 (380)
Q Consensus       168 ~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~  247 (380)
                                       .+...++++|++.|+|.+.. .+.....+|.+|+++      |++.+++++.+..+|..+++.
T Consensus        77 -----------------~~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~------r~~a~~~~~~~~~lG~~l~~~  132 (368)
T TIGR00903        77 -----------------FNYEWLLACQLLAALGQPFL-LNAFAPAASQIREER------RDLVISLLSFAMYLGIIFALA  132 (368)
T ss_pred             -----------------ccHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence                             24678999999999998864 455556689999766      999999999999999999999


Q ss_pred             HHHHhhhcchhhHHHHHHHHHHHHHHHHHHhh
Q 016902          248 LVVYIQMEHGWGSAFGALAIAMGISNMLFFIG  279 (380)
Q Consensus       248 i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~~~  279 (380)
                      +++++.+..|||+.|++.+++.++..++.+..
T Consensus       133 ~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~  164 (368)
T TIGR00903       133 AGLKIYTAGGLQLLIIPIAAVAAAGIILVLAA  164 (368)
T ss_pred             HHHHHHHccchHHHHHHHHHHHHHHHHHHHHH
Confidence            99999988999999988666655554444333

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.66  E-value=3.2e-15  Score=157.10  Aligned_cols=156  Identities=14%  Similarity=0.050  Sum_probs=129.4

Q ss_pred             HHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCCC
Q 016902           88 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD  167 (380)
Q Consensus        88 i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~~  167 (380)
                      +...+.+++..++|++..+.+++.+.+.++..++.+++|+++||+ |||++++++.++..++.+++.++           
T Consensus       185 ~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~-GRR~~lii~lil~~i~~ll~afa-----------  252 (742)
T TIGR01299       185 VVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL-GRKQCLLICLSVNGFFAFFSSFV-----------  252 (742)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHH-----------
Confidence            344566778889999999999999999999999999999999998 99999999999888888777664           


Q ss_pred             cccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHH
Q 016902          168 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT  247 (380)
Q Consensus       168 ~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~  247 (380)
                                       .+...++++|++.|+|.|+..++..++++|.+|.+.      |+..++++.....+|.++++.
T Consensus       253 -----------------~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~------Rg~~~g~~~~~~~iG~ila~~  309 (742)
T TIGR01299       253 -----------------QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK------RGEHLSWLCMFWMIGGIYAAA  309 (742)
T ss_pred             -----------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence                             356788899999999999999999999999999777      999999988888899888887


Q ss_pred             HHHHhhhc-------------chhhHHHHHHHHHHHHHHHHHHh
Q 016902          248 LVVYIQME-------------HGWGSAFGALAIAMGISNMLFFI  278 (380)
Q Consensus       248 i~~~i~~~-------------~gw~~~f~i~~~~~~~~~i~~~~  278 (380)
                      ++.++...             .+||+.|++.++..++++++.++
T Consensus       310 la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~  353 (742)
T TIGR01299       310 MAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTF  353 (742)
T ss_pred             HHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence            76555432             35888888776665555444333

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.65  E-value=2.1e-14  Score=139.06  Aligned_cols=164  Identities=16%  Similarity=0.081  Sum_probs=128.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 016902           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (380)
Q Consensus        71 ~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~  150 (380)
                      .+..++..++.....+.+...++.|+++++|++..+.+++.+.+.++..++.+++|+++||+ |||++++++.++..++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~i~~   81 (366)
T TIGR00886         3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-GPRYTTTLSLLLLAIPC   81 (366)
T ss_pred             hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHH
Confidence            34455555555666666666666679999999999999999999999999999999999998 99999999999999988


Q ss_pred             HHHHhhhhcccCCCCCCcccccccccCCCCCCcch-hHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhh
Q 016902          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSW-QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (380)
Q Consensus       151 ~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~-~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~  229 (380)
                      +++.++                            . +...+++++++.|++.+. .....++.+|.+++++      |+.
T Consensus        82 ~~~~~~----------------------------~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~------r~~  126 (366)
T TIGR00886        82 LWAGLA----------------------------VQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKI------QGT  126 (366)
T ss_pred             HHHHHH----------------------------hhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhh------hhH
Confidence            877764                            3 567788899999998654 4567789999999776      899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhh----------cchhhHHH-HHHHHHHH
Q 016902          230 FFNFFYLSVTVGAIVAFTLVVYIQM----------EHGWGSAF-GALAIAMG  270 (380)
Q Consensus       230 ~~~~~~~~~~iG~~i~~~i~~~i~~----------~~gw~~~f-~i~~~~~~  270 (380)
                      ..+++....++|..+++.+++.+..          ..+|++.| .+.+++..
T Consensus       127 ~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  178 (366)
T TIGR00886       127 ALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILL  178 (366)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHH
Confidence            9998887777777777666655443          24799999 44344433

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.65  E-value=1.5e-14  Score=142.30  Aligned_cols=177  Identities=10%  Similarity=-0.049  Sum_probs=144.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 016902           68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL  147 (380)
Q Consensus        68 ~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~  147 (380)
                      ++.+..+.+..++..+........++.|+.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||++++++.+++.
T Consensus        14 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~   92 (399)
T PRK05122         14 TLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-GPKKAVVFGLCGCA   92 (399)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-CCcchHHHHHHHHH
Confidence            34466666677777777666677788889999999999999999999999999999999999998 99999999999888


Q ss_pred             HHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhh
Q 016902          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (380)
Q Consensus       148 lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r  227 (380)
                      ++.+.+.++......                    ...+...++++|++.|+|.+...++...+..|.+++++      |
T Consensus        93 ~~~~~~~~~~~~~~~--------------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r  146 (399)
T PRK05122         93 LSGLLYLLAGLLAAW--------------------PVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH------T  146 (399)
T ss_pred             HHHHHHHHhhhhhcc--------------------chhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh------h
Confidence            877666554211000                    00245678889999999999999999999999998877      8


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHH
Q 016902          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGI  271 (380)
Q Consensus       228 ~~~~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~  271 (380)
                      ++.++++..+..+|..+++.+++++.+..||++.+++.+++.++
T Consensus       147 ~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~  190 (399)
T PRK05122        147 GRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALL  190 (399)
T ss_pred             ccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            99999988899999999999999998889999988776555443

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.65  E-value=1.3e-14  Score=143.85  Aligned_cols=167  Identities=16%  Similarity=0.187  Sum_probs=141.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 016902           66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI  145 (380)
Q Consensus        66 ~~~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l  145 (380)
                      .+|+......+..+...+..+.. ..+..++++++|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-g~r~~l~~~~~~   92 (426)
T PRK12307         15 PQKNALFSAWLGYVFDGFDFMLI-FYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF-GRKPLMMWSIVA   92 (426)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHH
Confidence            44555566666666666655543 4456678889999999999999999999999999999999998 999999999999


Q ss_pred             HHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhh
Q 016902          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (380)
Q Consensus       146 ~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~  225 (380)
                      ..++.+++.++                            .+...+++++++.|+|.|+..+....+..|.++++.     
T Consensus        93 ~~~~~~~~~~~----------------------------~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~-----  139 (426)
T PRK12307         93 YSVGTGLSGLA----------------------------SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL-----  139 (426)
T ss_pred             HHHHHHHHHHH----------------------------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH-----
Confidence            99988877765                            357788999999999999999999999999999877     


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHH
Q 016902          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA  268 (380)
Q Consensus       226 ~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~  268 (380)
                       |+.+.+++..+..+|..+++.+.+++.+..||++.|++.++.
T Consensus       140 -r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~  181 (426)
T PRK12307        140 -KSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLP  181 (426)
T ss_pred             -hhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHH
Confidence             899999999999999999999999988888999999875443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.65  E-value=7.2e-15  Score=148.04  Aligned_cols=173  Identities=16%  Similarity=0.125  Sum_probs=143.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 016902           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (380)
Q Consensus        71 ~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~  150 (380)
                      ...+++..++..+... +.....+++.+++|.+..+.+++.+.+.++..++.+++|+++||+ |||++++++.+++.++.
T Consensus         4 ~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~   81 (485)
T TIGR00711         4 TIVLMLGTFMAVLDST-IVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF-GTRRLFLISTFAFTLGS   81 (485)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-CcHHHHHHHHHHHHHHH
Confidence            3444445555555544 334455667789999999999999999999999999999999998 99999999999999988


Q ss_pred             HHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhH
Q 016902          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (380)
Q Consensus       151 ~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~  230 (380)
                      +++..+                            .+...+++++++.|++.+...+...+++.|.+|+++      |+.+
T Consensus        82 ~~~~~~----------------------------~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~  127 (485)
T TIGR00711        82 LLCGVA----------------------------PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK------RGRA  127 (485)
T ss_pred             HHHhCc----------------------------CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH------HHHH
Confidence            877654                            356778899999999999999999999999999766      9999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHhh
Q 016902          231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG  279 (380)
Q Consensus       231 ~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~~~  279 (380)
                      +++++....+|..+++.+++++.++.||++.|++.+.+.++.+++....
T Consensus       128 ~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~  176 (485)
T TIGR00711       128 MAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFI  176 (485)
T ss_pred             HHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998776665555444333

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.64  E-value=1.7e-14  Score=144.04  Aligned_cols=167  Identities=11%  Similarity=0.037  Sum_probs=136.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 016902           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (380)
Q Consensus        70 ~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg  149 (380)
                      ..+..++..++..+..+.+...++ .+.+++|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~~~~~~~~~~~~  101 (434)
T PRK11663         24 ILITMYLGYALFYFTRKSFNAAMP-EMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS-NARYFMGIGLIATGII  101 (434)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHhhH-HHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc-CCchhHHHHHHHHHHH
Confidence            333444444444444444444444 45567999999999999999999999999999999998 9999999999998888


Q ss_pred             HHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhh
Q 016902          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (380)
Q Consensus       150 ~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~  229 (380)
                      .+++.++                            .+...+++.+++.|++.|...+....+++|.+++++      |+.
T Consensus       102 ~~~~~~~----------------------------~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~------rg~  147 (434)
T PRK11663        102 NILFGFS----------------------------SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE------RGG  147 (434)
T ss_pred             HHHHHHH----------------------------hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH------HHH
Confidence            8777664                            356677788888899888888889999999999776      999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHH
Q 016902          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS  272 (380)
Q Consensus       230 ~~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~  272 (380)
                      .+++++.+.++|..+++.+.+++.+..||++.|++.++..++.
T Consensus       148 ~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~  190 (434)
T PRK11663        148 WWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVV  190 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998899999998877655444

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.64  E-value=5e-14  Score=140.57  Aligned_cols=178  Identities=16%  Similarity=0.209  Sum_probs=127.1

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcC---CCHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhcchhHHHH
Q 016902           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMH---KSFADSSNAVNNF---LGISQASSVLGGFLADAYLGRYWTIA  140 (380)
Q Consensus        67 ~~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~---~s~~~a~~~~~~~---~~~~~~~~l~~g~lsD~~~GR~~~i~  140 (380)
                      +++.+....+..+++.+..+. .+.+..++.++++   .+..+.+.....+   .++..++.+++|+++||+ |||+++.
T Consensus        20 ~~~~~~~~~~~~~~~~~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-Grr~~l~   97 (432)
T PRK10406         20 RIWAIVGASSGNLVEWFDFYV-YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-GRKKSML   97 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHH
Confidence            344444444556666666554 4556678888874   4555433333333   344458899999999998 9999999


Q ss_pred             HHHHHHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCC
Q 016902          141 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS  220 (380)
Q Consensus       141 i~~~l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~  220 (380)
                      ++.+++.++.++++++.......                    ......+++.|++.|+|.|+..+...++++|.+|+++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~  157 (432)
T PRK10406         98 ISVCMMCFGSLVIACLPGYETIG--------------------TWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR  157 (432)
T ss_pred             HHHHHHHHHHHHHhhcCCchhHH--------------------HHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc
Confidence            99999999988877641100000                    0124568889999999999999999999999999877


Q ss_pred             chhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh--------hcchhhHHHHHHHHHHHHH
Q 016902          221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAIAMGIS  272 (380)
Q Consensus       221 ~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~--------~~~gw~~~f~i~~~~~~~~  272 (380)
                            |+.+.++.+.+.++|..+++.+...+.        ...|||+.|++.++..++.
T Consensus       158 ------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~  211 (432)
T PRK10406        158 ------KGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA  211 (432)
T ss_pred             ------ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence                  898888888888888888776655443        2579999999876655443

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.64  E-value=1.1e-13  Score=139.85  Aligned_cols=175  Identities=15%  Similarity=0.106  Sum_probs=129.4

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 016902           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY  146 (380)
Q Consensus        67 ~~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~  146 (380)
                      +++.+.......++..+..+++. .+..++.+++|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++.
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-G~r~~~~~~~~~~  111 (476)
T PLN00028         34 HMRAFHLSWISFFTCFVSTFAAA-PLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-GPRYGSAFLLMLT  111 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHH
Confidence            34555555555555555555444 345678889999999999998889999999999999999998 9999999988888


Q ss_pred             HHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhh
Q 016902          147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (380)
Q Consensus       147 ~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~  226 (380)
                      .++.+++.++                            .+...+++++++.|++.+... ....+++|.+|.+.      
T Consensus       112 ~~~~~~~~~~----------------------------~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~------  156 (476)
T PLN00028        112 APAVFCMSLV----------------------------SSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKI------  156 (476)
T ss_pred             HHHHHHHHHh----------------------------cCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhh------
Confidence            8877766654                            245667788889999887654 34567899999877      


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHh----hhc-----chhhHHHHHHHHHHHHHHHHHHh
Q 016902          227 LDRFFNFFYLSVTVGAIVAFTLVVYI----QME-----HGWGSAFGALAIAMGISNMLFFI  278 (380)
Q Consensus       227 r~~~~~~~~~~~~iG~~i~~~i~~~i----~~~-----~gw~~~f~i~~~~~~~~~i~~~~  278 (380)
                      |+.++++++...++|+.+++.+.+.+    .+.     .|||+.|++.+++.++..++.++
T Consensus       157 rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~  217 (476)
T PLN00028        157 VGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLT  217 (476)
T ss_pred             eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999998777777777665555443    222     48999999887776655444333

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.64  E-value=2.3e-14  Score=140.54  Aligned_cols=176  Identities=14%  Similarity=0.123  Sum_probs=144.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 016902           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (380)
Q Consensus        70 ~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg  149 (380)
                      .++.+.+..++..+..+.+...+ +.+.+++|++..+.+...+.+..+..++.++.|+++||+ |||+++.++.++..++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~   81 (382)
T PRK10091          4 VILSLALGTFGLGMAEFGIMGVL-TELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRY-SLKHILLFLVALCVIG   81 (382)
T ss_pred             hHHHHHHHHHHHHhhHHHHHhCh-HHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHHHHH
Confidence            35556666666666665555544 557789999999999999999999999999999999998 9999999999999998


Q ss_pred             HHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhh
Q 016902          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (380)
Q Consensus       150 ~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~  229 (380)
                      .+++..+                            .+...+++++++.|++.+...+....+..|.+++++      |+.
T Consensus        82 ~~l~~~~----------------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~  127 (382)
T PRK10091         82 NAMFTLS----------------------------SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK------VTA  127 (382)
T ss_pred             HHHHHHh----------------------------CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH------hhH
Confidence            8877764                            357788999999999999888888888899988766      888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHhhcc
Q 016902          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP  281 (380)
Q Consensus       230 ~~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~~~~~  281 (380)
                      .++++..+..+|..+++.+++++.+..||++.|++.++..++..+..+...|
T Consensus       128 ~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp  179 (382)
T PRK10091        128 AVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVP  179 (382)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            8999888999999999999999988889999999887766555444333333

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.63  E-value=3.4e-14  Score=143.76  Aligned_cols=169  Identities=14%  Similarity=0.215  Sum_probs=142.7

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 016902           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (380)
Q Consensus        65 ~~~~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~  144 (380)
                      +.+|+.+..+.+..++..+..+.+ ..+..++.+++|++..+.+++.+.+.++..++.+++|+++||+ |||++++++.+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~   93 (496)
T PRK03893         16 RAQWKAFSAAWLGYLLDGFDFVLI-TLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-GRRLAMVISIV   93 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHH
Confidence            345666666666666666665544 4455678889999999999999999999999999999999998 99999999999


Q ss_pred             HHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhh
Q 016902          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (380)
Q Consensus       145 l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~  224 (380)
                      +..++.+++.++                            .+...+++++++.|++.++..+....+..|.++.++    
T Consensus        94 ~~~~~~~~~~~~----------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~----  141 (496)
T PRK03893         94 LFSVGTLACGFA----------------------------PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL----  141 (496)
T ss_pred             HHHHHHHHHHHH----------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH----
Confidence            998888887764                            356778889999999999999999999999999766    


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHH
Q 016902          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAM  269 (380)
Q Consensus       225 ~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~  269 (380)
                        |+..+++++.+..+|..+++.+.+++.+..+|++.|++.++..
T Consensus       142 --r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~  184 (496)
T PRK03893        142 --RNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPI  184 (496)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence              8999999999999999999999999998899999998754433

>TIGR00895 2A0115 benzoate transport

Probab=99.62  E-value=1.9e-14  Score=140.23  Aligned_cols=175  Identities=16%  Similarity=0.110  Sum_probs=142.0

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 016902           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (380)
Q Consensus        65 ~~~~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~  144 (380)
                      +.+|+.+...++..+...+..+ ......+++.+++|++..+.+.+.+.+.++..++.++.|+++||+ |||+++.++.+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~   90 (398)
T TIGR00895        13 RYQWRAIILSFLIMLMDGYDLA-AMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-GRKRVLLWSIL   90 (398)
T ss_pred             chHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hhHHHHHHHHH
Confidence            3445555555555555544444 334456677788999999999999999999999999999999998 99999999998


Q ss_pred             HHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhh
Q 016902          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (380)
Q Consensus       145 l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~  224 (380)
                      +..++.+++.+.                            .+...+++++++.|++.+...+...++.+|.+|++.    
T Consensus        91 ~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----  138 (398)
T TIGR00895        91 LFSVFTLLCALA----------------------------TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF----  138 (398)
T ss_pred             HHHHHHHHHHHc----------------------------cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh----
Confidence            888887776653                            245677888999999999999999999999999776    


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHH
Q 016902          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNML  275 (380)
Q Consensus       225 ~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~  275 (380)
                        |+..++++..+..+|..+++.+.+++.+..||++.|++.+++..+..++
T Consensus       139 --r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~  187 (398)
T TIGR00895       139 --RGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLL  187 (398)
T ss_pred             --hchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHH
Confidence              9999999999999999999999999998899999998875554444333

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.62  E-value=8.7e-14  Score=136.66  Aligned_cols=166  Identities=16%  Similarity=0.104  Sum_probs=135.1

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhh
Q 016902           77 NEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLC  156 (380)
Q Consensus        77 ~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~  156 (380)
                      ..+....++...... .+.+.+++|.+..+.++..+.+..+..++.++.|+++||+ |||+.++++.+++.++.+++..+
T Consensus        11 ~~~~~~~~~~~~~~~-lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~i~~~~~~~~   88 (392)
T PRK10473         11 LVLLYPAGIDMYLVG-LPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS-GRKPVAIPGAALFIIASLLCSLA   88 (392)
T ss_pred             HHHHHHHHHHHHhhh-HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-CChHHHHHHHHHHHHHHHHHHHh
Confidence            333444444433443 4456678999999999999999999999999999999998 99999999998888888776653


Q ss_pred             hhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHH
Q 016902          157 ATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL  236 (380)
Q Consensus       157 ~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~  236 (380)
                                                  .+...+++++++.|++.+...+...++..|.+++++      |++.+++++.
T Consensus        89 ----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~  134 (392)
T PRK10473         89 ----------------------------ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR------RAKVLSLLNG  134 (392)
T ss_pred             ----------------------------CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH------HHHHHHHHHH
Confidence                                        245667888999999999888889999999999777      9999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHh
Q 016902          237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (380)
Q Consensus       237 ~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~~  278 (380)
                      ..++|..++|.+++++.+..||++.|++.+++.++..++.+.
T Consensus       135 ~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~  176 (392)
T PRK10473        135 ITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLF  176 (392)
T ss_pred             HHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998888889999998877766555544333

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.62  E-value=3.9e-14  Score=136.81  Aligned_cols=152  Identities=14%  Similarity=0.050  Sum_probs=128.3

Q ss_pred             HhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcc
Q 016902           90 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC  169 (380)
Q Consensus        90 ~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~~~c  169 (380)
                      +.+.+++.+++|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.++++++             
T Consensus        23 ~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-G~r~~~~~~~~~~~~~~~~~~~~-------------   88 (377)
T TIGR00890        23 TLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-GPRAVAMLGGILYGLGFTFYAIA-------------   88 (377)
T ss_pred             hhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-CccchhHHhHHHHHHHHHHHHHH-------------
Confidence            4466788899999999999999999999999999999999998 99999999999999998887765             


Q ss_pred             cccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 016902          170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV  249 (380)
Q Consensus       170 ~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~  249 (380)
                                     .+...+++++.+.|++.+...++......+.++ ++      |+...+++..+..+|..+++.+.
T Consensus        89 ---------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~~~~~~~  146 (377)
T TIGR00890        89 ---------------DSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DK------RGLASGIIIGGYGLGSFILSPLI  146 (377)
T ss_pred             ---------------HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cc------cHHHHHHHHHhcchhHhHHHHHH
Confidence                           467778889999999998887777778888776 34      88899999999999988776677


Q ss_pred             HHhhhcchhhHHHHHHHHHHHHHHHHHH
Q 016902          250 VYIQMEHGWGSAFGALAIAMGISNMLFF  277 (380)
Q Consensus       250 ~~i~~~~gw~~~f~i~~~~~~~~~i~~~  277 (380)
                      +.+.+..||++.|++.+++.++..+..+
T Consensus       147 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~  174 (377)
T TIGR00890       147 TSVINLEGVPAAFIYMGIIFLLVIVLGA  174 (377)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            7777778999999988777665554443

>PRK11043 putative transporter; Provisional

Probab=99.62  E-value=8.7e-14  Score=137.08  Aligned_cols=149  Identities=17%  Similarity=0.206  Sum_probs=126.1

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCccccccc
Q 016902           95 FMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQ  174 (380)
Q Consensus        95 yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~  174 (380)
                      .+.+++|.+..+.++..+.+.++..++.+++|+++||+ |||+++.++.++..++.+++..+                  
T Consensus        31 ~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~------------------   91 (401)
T PRK11043         31 AIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY-GRKPVLLAGLSLFALGSLGMLWV------------------   91 (401)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-CCcHHHHHHHHHHHHHHHHHHHh------------------
Confidence            36789999999999999999999999999999999998 99999999988888877776653                  


Q ss_pred             ccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016902          175 LLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM  254 (380)
Q Consensus       175 ~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~  254 (380)
                                .+...+++++++.|+|.+...+...++..|.++++.      ++..++..+....+|..++|.+++++.+
T Consensus        92 ----------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~  155 (401)
T PRK11043         92 ----------ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------ANRVFATIMPLVALSPALAPLLGAWLLN  155 (401)
T ss_pred             ----------cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                      346678888999999988877777888999998765      7777888777888999999999999999


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHh
Q 016902          255 EHGWGSAFGALAIAMGISNMLFFI  278 (380)
Q Consensus       255 ~~gw~~~f~i~~~~~~~~~i~~~~  278 (380)
                      ..||++.|++.+++.++..++.+.
T Consensus       156 ~~g~~~~~~~~~~~~~~~~~~~~~  179 (401)
T PRK11043        156 HFGWQAIFATLFAITLLLILPTLR  179 (401)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHH
Confidence            899999998877766655544433

>PRK03699 putative transporter; Provisional

Probab=99.62  E-value=1.1e-13  Score=136.26  Aligned_cols=175  Identities=7%  Similarity=0.054  Sum_probs=140.9

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 016902           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (380)
Q Consensus        65 ~~~~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~  144 (380)
                      ..+||..+...+..++.....+.+...+ ..+.+++|++..+.+.+.+.+.++..++.+++|+++||+ |||+++.++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-g~r~~~~~~~~   80 (394)
T PRK03699          3 SNRIKLTWISFLSYALTGALVIVTGMVM-GPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEII-PLKRQLIFGFA   80 (394)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence            3456666666666666666555454444 446778999999999999999999999999999999998 99999999998


Q ss_pred             HHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhh
Q 016902          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (380)
Q Consensus       145 l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~  224 (380)
                      +..++.+++.++                            .+...+++++++.|++.|...++..+++.|.+|+++    
T Consensus        81 ~~~i~~~l~~~~----------------------------~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~----  128 (394)
T PRK03699         81 LMILAVAGLMFS----------------------------HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ----  128 (394)
T ss_pred             HHHHHHHHHHHc----------------------------chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch----
Confidence            888888777664                            356678889999999999888888899999998766    


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHhhh-cchhhHHHHHHHHHHHHHHHH
Q 016902          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQM-EHGWGSAFGALAIAMGISNML  275 (380)
Q Consensus       225 ~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~-~~gw~~~f~i~~~~~~~~~i~  275 (380)
                        |+..++..+....+|+.++|.+.+++.. ..||++.|.+.+++.++..++
T Consensus       129 --r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~  178 (394)
T PRK03699        129 --RGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFIL  178 (394)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence              8888888888888898999988887754 579999998877665554443

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.61  E-value=5.4e-14  Score=137.03  Aligned_cols=155  Identities=17%  Similarity=0.238  Sum_probs=132.3

Q ss_pred             HHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCCC
Q 016902           88 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD  167 (380)
Q Consensus        88 i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~~  167 (380)
                      +...++.+. +++|++..+.+...+.+.++..++.+++|+++||+ |||+++.++.++..++.+++...           
T Consensus        10 ~~p~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~i~~~~~~~~-----------   76 (377)
T PRK11102         10 YLPALPVIA-ADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-GRKPVILGGTLVFALAAVACALA-----------   76 (377)
T ss_pred             HhccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-CChHHHHHHHHHHHHHHHHHHHH-----------
Confidence            334455544 57999999999999999999999999999999998 99999999999988888877664           


Q ss_pred             cccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHH
Q 016902          168 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT  247 (380)
Q Consensus       168 ~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~  247 (380)
                                       .+...+++.+++.|++.+...+...++..|.+++++      |++.+++++....+|..+++.
T Consensus        77 -----------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~  133 (377)
T PRK11102         77 -----------------QTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLVMTIAPLLAPI  133 (377)
T ss_pred             -----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence                             346677888999999999988999999999999777      999999999999999999999


Q ss_pred             HHHHhhhcchhhHHHHHHHHHHHHHHHHHHh
Q 016902          248 LVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (380)
Q Consensus       248 i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~~  278 (380)
                      +++++.+..+|++.|++.+++.++..++...
T Consensus       134 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (377)
T PRK11102        134 IGGWLLVWFSWHAIFWVLALAAILAAALVFF  164 (377)
T ss_pred             HHHHHHHHcChHHHHHHHHHHHHHHHHHHHH
Confidence            9999998889999998877766655544433

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.60  E-value=2.9e-13  Score=133.14  Aligned_cols=171  Identities=12%  Similarity=-0.011  Sum_probs=135.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 016902           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFAD-----SSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI  145 (380)
Q Consensus        71 ~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~-----a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l  145 (380)
                      ...+++..++..++++.....++.|++ ++|++..+     .+.+.+++.++..++.++.|+++||+ |||+++.++.++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~   93 (408)
T PRK09874         16 LTVAWLGCFLTGAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-GRKIMLLRSALG   93 (408)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-CcHHHHHHHHHH
Confidence            455556667777777666677777764 68888554     36778888899999999999999998 999999999888


Q ss_pred             HHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhh
Q 016902          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (380)
Q Consensus       146 ~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~  225 (380)
                      ..++.+++...                            .+...+++.+++.|++.+ ..+....+..|.+++++     
T Consensus        94 ~~~~~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~-----  139 (408)
T PRK09874         94 MGIVMVLMGLA----------------------------QNIWQFLILRALLGLLGG-FVPNANALIATQVPRNK-----  139 (408)
T ss_pred             HHHHHHHHHHH----------------------------hhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhh-----
Confidence            88877766553                            356678888888888754 45677788889998766     


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHh
Q 016902          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (380)
Q Consensus       226 ~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~~  278 (380)
                       |+...++++....+|..+++.+.+++.+..+|++.|++.+++.++..+..+.
T Consensus       140 -~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (408)
T PRK09874        140 -SGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLF  191 (408)
T ss_pred             -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence             8999999999999999999999999988889999999887776655554433

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.60  E-value=3.4e-14  Score=137.60  Aligned_cols=153  Identities=20%  Similarity=0.183  Sum_probs=134.3

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCccc
Q 016902           91 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD  170 (380)
Q Consensus        91 ~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~~~c~  170 (380)
                      ...+++.+++|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.+++.++              
T Consensus        15 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~--------------   79 (399)
T TIGR00893        15 FAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-GARKTLAVFIVIWGVFTGLQAFA--------------   79 (399)
T ss_pred             HhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-CcceeeHHHHHHHHHHHHHHHHH--------------
Confidence            345568889999999999999999999999999999999998 99999999999988888877764              


Q ss_pred             ccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 016902          171 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV  250 (380)
Q Consensus       171 ~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~  250 (380)
                                    .+...+++++++.|+|.+...+....+..|.+|+++      |++.++++....++|..+++.+.+
T Consensus        80 --------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~  139 (399)
T TIGR00893        80 --------------GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE------RATAVSIFNSAQGLGGIIGGPLVG  139 (399)
T ss_pred             --------------cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH------HHHHHHHHHHhchHHHHHHHHHHH
Confidence                          357788999999999999999999999999999776      999999999999999999999999


Q ss_pred             HhhhcchhhHHHHHHHHHHHHHHHHHHh
Q 016902          251 YIQMEHGWGSAFGALAIAMGISNMLFFI  278 (380)
Q Consensus       251 ~i~~~~gw~~~f~i~~~~~~~~~i~~~~  278 (380)
                      ++.+..+|++.|++.+++.++..++.+.
T Consensus       140 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (399)
T TIGR00893       140 WILIHFSWQWAFIIEGVLGIIWGVLWLK  167 (399)
T ss_pred             HHHHhCCchHHHHHHHHHHHHHHHHhhh
Confidence            9988899999999877766655544433

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.59  E-value=1.2e-13  Score=136.26  Aligned_cols=151  Identities=12%  Similarity=0.113  Sum_probs=128.2

Q ss_pred             HHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCC
Q 016902           86 FGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPN  165 (380)
Q Consensus        86 ~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~  165 (380)
                      +.+.. ..+.+.+++|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.+++.++.+++.++         
T Consensus        26 ~~~~~-~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-G~r~~l~~~~~l~~~~~~~~~~a---------   94 (393)
T PRK09705         26 TSVGP-LLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV-SERRSVAISLLLIAVGALMRELY---------   94 (393)
T ss_pred             hccch-hHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-CchHHHHHHHHHHHHHHHHHHHC---------
Confidence            33433 44567889999999999999999999999999999999998 99999999999999999998875         


Q ss_pred             CCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHH
Q 016902          166 QDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA  245 (380)
Q Consensus       166 ~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~  245 (380)
                                         .+...++++|++.|+|.+...++......+.++ ++      |+.+++++..+.++|..++
T Consensus        95 -------------------~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~~~~g~~~g  148 (393)
T PRK09705         95 -------------------PQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR------TPLVMGLWSAALMGGGGLG  148 (393)
T ss_pred             -------------------cchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc------chhHHHHHHHHHHHHHHHH
Confidence                               346678899999999999999888899999886 55      8999999999999999999


Q ss_pred             HHHHHHhhhcc-hhhHHHHHHHHHHHHHH
Q 016902          246 FTLVVYIQMEH-GWGSAFGALAIAMGISN  273 (380)
Q Consensus       246 ~~i~~~i~~~~-gw~~~f~i~~~~~~~~~  273 (380)
                      +.+++++.++. +|++.+.+.++..++.+
T Consensus       149 ~~~~~~l~~~~~~w~~~~~~~~~~~~~~~  177 (393)
T PRK09705        149 AAITPWLVQHSETWYQTLAWWALPAVVAL  177 (393)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            99999887765 79988766554444333

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.59  E-value=2.7e-14  Score=148.95  Aligned_cols=208  Identities=14%  Similarity=0.102  Sum_probs=153.6

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 016902           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (380)
Q Consensus        65 ~~~~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~  144 (380)
                      ..+++.+.+.+...++......++.....+.+.++|+++..+.+++.+.+.++..++.++.|+++||+ ||++.+.++.+
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~-~r~~~i~~g~l  106 (633)
T TIGR00805        28 FSKIKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL-HRPIVIGIGCA  106 (633)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhccc-CcceEEEecHH
Confidence            34556554555545555555566777777889999999999999999999999999999999999997 99999999999


Q ss_pred             HHHHHHHHHHhhhhccc-CC-------------CCCCccccccc-------ccCCCCCCc--chhHHHHHHHHHHHHHhc
Q 016902          145 IYLAGLTGITLCATMKV-FM-------------PNQDNCDRISQ-------LLGSCEPAK--SWQMLYLYTVLYITGFGA  201 (380)
Q Consensus       145 l~~lg~~~l~l~~~~~~-l~-------------~~~~~c~~~~~-------~~~~c~~~~--~~~~~~l~~~l~l~g~g~  201 (380)
                      ++.+|.+++++...+.. ..             ...+.|.....       ....|...+  +....+++++|++.|+|.
T Consensus       107 l~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~  186 (633)
T TIGR00805       107 IMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGA  186 (633)
T ss_pred             HHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccC
Confidence            99999999887532110 00             00012310000       001233222  123567789999999999


Q ss_pred             cchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcc----------------------hhh
Q 016902          202 AGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH----------------------GWG  259 (380)
Q Consensus       202 g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~----------------------gw~  259 (380)
                      +...+...+++.|.+++++      |+.++++++.+..+|+++|+++++++.+.+                      +|+
T Consensus       187 ~~~~~~~~~~i~d~~~~~~------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWw  260 (633)
T TIGR00805       187 TPIFPLGISYIDDFAKSKN------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWW  260 (633)
T ss_pred             CcchhcCchhhhccCCccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHH
Confidence            9999999999999999888      999999999999999999999999876532                      277


Q ss_pred             HHHHHHHHHHHHHHHHHHhh
Q 016902          260 SAFGALAIAMGISNMLFFIG  279 (380)
Q Consensus       260 ~~f~i~~~~~~~~~i~~~~~  279 (380)
                      .+|++.+++.++..+.++..
T Consensus       261 l~Fli~g~l~~l~~v~l~~~  280 (633)
T TIGR00805       261 IGFLICGGVALLTSIPFFFF  280 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHhC
Confidence            88888777666555444443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.59  E-value=1.7e-13  Score=139.08  Aligned_cols=175  Identities=18%  Similarity=0.133  Sum_probs=127.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHH-HH----H-HHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Q 016902           68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFAD-SS----N-AVNNFLGISQASSVLGGFLADAYLGRYWTIAI  141 (380)
Q Consensus        68 ~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~-a~----~-~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i  141 (380)
                      ++.++...+..+++.+.+. +......++.++++.+... ..    . +.+...++..++.+++|+++||+ |||+++.+
T Consensus        15 ~~~~~~~~~g~~~~~~d~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~   92 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFG-VYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY-GRQKILAI   92 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHH
Confidence            4455556667777776665 4455667888888643311 11    1 24666788889999999999998 99999999


Q ss_pred             HHHHHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCc
Q 016902          142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK  221 (380)
Q Consensus       142 ~~~l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~  221 (380)
                      +.+++.++.++++++.....+.                    -....+++++|++.|+|.|+..++..++++|.+|++. 
T Consensus        93 ~~~l~~i~~~~~a~~~~~~~~g--------------------~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~-  151 (490)
T PRK10642         93 TIVIMSISTFCIGLIPSYATIG--------------------IWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK-  151 (490)
T ss_pred             HHHHHHHHHHHHHhcccHHHHH--------------------HHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC-
Confidence            9999999998888752100000                    0011247889999999999999999999999999887 


Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh--------hcchhhHHHHHHHHHHH
Q 016902          222 DYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAIAMG  270 (380)
Q Consensus       222 ~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~--------~~~gw~~~f~i~~~~~~  270 (380)
                           |+.+.+++..+..+|..+++.+...+.        .++|||+.|++.++..+
T Consensus       152 -----Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l  203 (490)
T PRK10642        152 -----RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGI  203 (490)
T ss_pred             -----CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHH
Confidence                 899888888888888777766554432        25799999998665443

>TIGR00897 2A0118 polyol permease family

Probab=99.59  E-value=2.3e-13  Score=134.38  Aligned_cols=172  Identities=12%  Similarity=0.054  Sum_probs=135.0

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 016902           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (380)
Q Consensus        65 ~~~~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~  144 (380)
                      -+-||++....+..++..++.+....+++.|+ +++|++..+.+.+.+.+.++..++.+++|+++||+ |||+++.++.+
T Consensus         9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~-g~k~~l~~~~~   86 (402)
T TIGR00897         9 IGIPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEII-GPLKTMMIGLL   86 (402)
T ss_pred             cCCCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHH
Confidence            34556677777777777777766666777777 67899999999999999999999999999999998 99999999999


Q ss_pred             HHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhh
Q 016902          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (380)
Q Consensus       145 l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~  224 (380)
                      +..++.+++.+...          +.              .+...+++.+++.|+|.+...+...+...+.+++++    
T Consensus        87 ~~~~~~~~~~~~~~----------~~--------------~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~----  138 (402)
T TIGR00897        87 LWCVGHAAFIVFGL----------GH--------------ANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN----  138 (402)
T ss_pred             HHHHHHHHHHHHhc----------cC--------------ccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH----
Confidence            88888765432110          00              245667778888899888777777788889988776    


Q ss_pred             hhhhhHHHHHHHHHHHHH-HHHHHHHHHhhhcchhhHHHHHHHHH
Q 016902          225 THLDRFFNFFYLSVTVGA-IVAFTLVVYIQMEHGWGSAFGALAIA  268 (380)
Q Consensus       225 ~~r~~~~~~~~~~~~iG~-~i~~~i~~~i~~~~gw~~~f~i~~~~  268 (380)
                        |++..++++.+.++|. .+++.+++++.+..||+..++....+
T Consensus       139 --~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~  181 (402)
T TIGR00897       139 --LSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAF  181 (402)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence              9999999999999996 57899988988888876555544433

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.58  E-value=1.5e-13  Score=131.02  Aligned_cols=168  Identities=19%  Similarity=0.245  Sum_probs=143.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 016902           73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG  152 (380)
Q Consensus        73 ~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~  152 (380)
                      .+....++..+..+.....++.|. +++|.+..+.+...+....+..++.++.|+++||+ |||+.+.++.++..++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-g~r~~~~~~~~~~~~~~~~   80 (352)
T cd06174           3 LLFLGFFLSGLDRGLLSPALPLLA-EDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGLLLFALGSLL   80 (352)
T ss_pred             HHHHHHHHHHHhhhhhHhhHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CCchhhHHHHHHHHHHHHH
Confidence            344556666677766666666555 57799999999999999999999999999999998 9999999999999998888


Q ss_pred             HHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHH
Q 016902          153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN  232 (380)
Q Consensus       153 l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~  232 (380)
                      +.+.                            .+...+++++++.|++.+...+...++..|.+++++      |++.++
T Consensus        81 ~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~  126 (352)
T cd06174          81 LAFA----------------------------SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE------RGRALG  126 (352)
T ss_pred             HHHh----------------------------ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc------hhhhhh
Confidence            7764                            246778889999999999999999999999999877      999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHH
Q 016902          233 FFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF  276 (380)
Q Consensus       233 ~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~  276 (380)
                      +++....+|..+++.+.+++.+..+|++.|++.++..+++.++.
T Consensus       127 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (352)
T cd06174         127 LFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLL  170 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998899999988777666555443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK10133 L-fucose transporter; Provisional

Probab=99.58  E-value=6.5e-13  Score=132.97  Aligned_cols=153  Identities=13%  Similarity=-0.014  Sum_probs=118.8

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 016902           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY  146 (380)
Q Consensus        67 ~~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~  146 (380)
                      ....+..+.+..+...+....... +.+.+++++|++..+.++..+.+.++..++.++.|+++||+ |||+++.++.+++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~-~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-G~r~~l~~g~~~~  101 (438)
T PRK10133         24 YIIPFALLCSLFFLWAVANNLNDI-LLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLY  101 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHH
Confidence            344555555555555555544444 44556999999999999999999999999999999999998 9999999999999


Q ss_pred             HHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhh
Q 016902          147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (380)
Q Consensus       147 ~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~  226 (380)
                      .++.+++.....                         ..+...++++|++.|+|.|...++..++++|..+++.      
T Consensus       102 ~~~~~l~~~~~~-------------------------a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~------  150 (438)
T PRK10133        102 ALGAALFWPAAE-------------------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------  150 (438)
T ss_pred             HHHHHHHHHHHh-------------------------cCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh------
Confidence            999877643211                         0357788999999999999999999999998755443      


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHh
Q 016902          227 LDRFFNFFYLSVTVGAIVAFTLVVYI  252 (380)
Q Consensus       227 r~~~~~~~~~~~~iG~~i~~~i~~~i  252 (380)
                      +....+.+.....+|..+++.+++.+
T Consensus       151 ~~~~~s~~~~~~~~G~~~g~~~g~~l  176 (438)
T PRK10133        151 GHFRLNLAQTFNSFGAIIAVVFGQSL  176 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44456777777778888887776654

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.57  E-value=1e-13  Score=137.98  Aligned_cols=151  Identities=18%  Similarity=0.266  Sum_probs=125.4

Q ss_pred             HHHHHhcCCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCC
Q 016902           94 TFMFYVMHKS--------FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPN  165 (380)
Q Consensus        94 ~yl~~~~~~s--------~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~  165 (380)
                      ..+..+++++        ..+.+++.+.+.++..++.+++|+++||+ |||++++++.++..++.+++.+...       
T Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~-------  123 (481)
T TIGR00879        52 ALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRF-GRKKSLLIIALLFVIGAILMGLAAF-------  123 (481)
T ss_pred             hcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhh-hhHHHHHHHHHHHHHHHHHHHHhcc-------
Confidence            3445555555        78999999999999999999999999998 9999999999999988888765321       


Q ss_pred             CCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHH
Q 016902          166 QDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA  245 (380)
Q Consensus       166 ~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~  245 (380)
                                        ..+...+++++++.|+|.+...+...++++|.+++++      |+..+++++.+.++|..++
T Consensus       124 ------------------~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~~  179 (481)
T TIGR00879       124 ------------------ALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILVA  179 (481)
T ss_pred             ------------------ccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHHH
Confidence                              0234578899999999999999999999999999887      9999999999999999999


Q ss_pred             HHHH---HHhhhcchhhHHHHHHHHHHHHHHHHH
Q 016902          246 FTLV---VYIQMEHGWGSAFGALAIAMGISNMLF  276 (380)
Q Consensus       246 ~~i~---~~i~~~~gw~~~f~i~~~~~~~~~i~~  276 (380)
                      +.+.   ..+.+..+|++.|++.++..++.++..
T Consensus       180 ~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~  213 (481)
T TIGR00879       180 YGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGL  213 (481)
T ss_pred             HHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHH
Confidence            9988   666677899999998665555444433

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.57  E-value=3.5e-13  Score=136.70  Aligned_cols=179  Identities=13%  Similarity=0.051  Sum_probs=128.3

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 016902           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY  146 (380)
Q Consensus        67 ~~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~  146 (380)
                      .|+.....+...++..+.+|++..+++.|+++.+|++...+........++..++.+++|+++|++ |||++++++.++.
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~  326 (490)
T PRK10642        248 HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF-GRRPFVILGSVAL  326 (490)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHH
Confidence            455555444555666788888999999999999999988887777778888889999999999998 9999988887655


Q ss_pred             HHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhh
Q 016902          147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (380)
Q Consensus       147 ~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~  226 (380)
                      .++.+++.....     .                    .+...+++++++.+++.++..+....+..+.+|++.      
T Consensus       327 ~~~~~~~~~~~~-----~--------------------~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~------  375 (490)
T PRK10642        327 FVLAIPAFILIN-----S--------------------NVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHI------  375 (490)
T ss_pred             HHHHHHHHHHHh-----C--------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcc------
Confidence            444333222110     0                    234556677777777777667777888889999888      


Q ss_pred             hhhHHHH-HHHHHHHHHHHHHHHHHHhhhcch-hhHHHHHHHHHHHHHHHHHHh
Q 016902          227 LDRFFNF-FYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFI  278 (380)
Q Consensus       227 r~~~~~~-~~~~~~iG~~i~~~i~~~i~~~~g-w~~~f~i~~~~~~~~~i~~~~  278 (380)
                      |++++++ +++ ..+++.++|.+.+++.+..+ |+..+++..+..+++++..++
T Consensus       376 Rg~~~g~~~~~-~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~  428 (490)
T PRK10642        376 RYSALAAAFNI-SVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVT  428 (490)
T ss_pred             chHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Confidence            9999998 555 55667788999999877554 666665544444444444433

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.57  E-value=3.1e-13  Score=131.24  Aligned_cols=168  Identities=11%  Similarity=0.051  Sum_probs=127.8

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH-HHHHHHHHHHHHH
Q 016902           76 GNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAI-FTTIYLAGLTGIT  154 (380)
Q Consensus        76 ~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i-~~~l~~lg~~~l~  154 (380)
                      +..++..++.......++.|+++++|.+..+.+.+.+.+.+...+..++.|.++||+ ||||.+++ +.++..++.+++.
T Consensus         4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~   82 (375)
T TIGR00899         4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQ-GDRKGLILFCCLLAALACLLFA   82 (375)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHHHHH
Confidence            445666677777778888999999999999999999999998999999999999998 99887665 4444455555544


Q ss_pred             hhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhh--HHH
Q 016902          155 LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR--FFN  232 (380)
Q Consensus       155 l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~--~~~  232 (380)
                      .+                            .+...+++.+++.+.+.+...+...++..|..+++.      |..  ..+
T Consensus        83 ~~----------------------------~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~  128 (375)
T TIGR00899        83 WN----------------------------RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTG------REAVMFSS  128 (375)
T ss_pred             hc----------------------------chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc------hhhHHHHH
Confidence            43                            245566777777777767777777778888776444      443  356


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHh
Q 016902          233 FFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (380)
Q Consensus       233 ~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~~  278 (380)
                      +.....++|..+++.+++++.+..||++.|++.+++.++..++.+.
T Consensus       129 ~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~  174 (375)
T TIGR00899       129 VMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWL  174 (375)
T ss_pred             HHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            7777888999999999999988899999999887776655554443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.56  E-value=2.1e-13  Score=137.35  Aligned_cols=152  Identities=16%  Similarity=0.202  Sum_probs=121.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhc-ccCCCCCCcccccccccCCC
Q 016902          101 HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM-KVFMPNQDNCDRISQLLGSC  179 (380)
Q Consensus       101 ~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~-~~l~~~~~~c~~~~~~~~~c  179 (380)
                      +.+..+.+++.+.+.++..++.+++|+++||+ |||++++++.+++.++.++.++.... .....               
T Consensus        51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~-Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~---------------  114 (479)
T PRK10077         51 SAANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISALGSAWPEFGFTSIGP---------------  114 (479)
T ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHhhccccccccc---------------
Confidence            88889999999999999999999999999998 99999999999998887776653110 00000               


Q ss_pred             CCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh------
Q 016902          180 EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ------  253 (380)
Q Consensus       180 ~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~------  253 (380)
                        ++......++++|++.|++.|+..+...++++|.+|+++      |+.+++++..+..+|..+++.+..++.      
T Consensus       115 --~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~  186 (479)
T PRK10077        115 --DNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI------RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDAS  186 (479)
T ss_pred             --cchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhccCccc
Confidence              011335678899999999999999999999999999877      999999999999999998877665443      


Q ss_pred             --hcchhhHHHHHHHHHHHHHHHHH
Q 016902          254 --MEHGWGSAFGALAIAMGISNMLF  276 (380)
Q Consensus       254 --~~~gw~~~f~i~~~~~~~~~i~~  276 (380)
                        +..|||+.|++.++..++.++..
T Consensus       187 ~~~~~gWr~~f~~~~~~~~~~~~~~  211 (479)
T PRK10077        187 WLNTDGWRYMFASEAIPALLFLMLL  211 (479)
T ss_pred             ccccCChHHHHHHHHHHHHHHHHHH
Confidence              34689999998776665554433

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.56  E-value=8.2e-13  Score=131.10  Aligned_cols=173  Identities=11%  Similarity=0.033  Sum_probs=136.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 016902           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (380)
Q Consensus        71 ~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~  150 (380)
                      .+.+....++..+.. ++...+.+.+++++|++..+.+++.+.+.++..++.++.|+++||+ |||++++++.+++.+|.
T Consensus         5 ~~~~~~~f~~~G~~~-~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~-G~r~~~~~g~~l~~~g~   82 (410)
T TIGR00885         5 FALITSLFALWGFAN-DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL-SYKAGILLGLFLYALGA   82 (410)
T ss_pred             HHHHHHHHHHHHHHH-HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHH
Confidence            344444444444444 4555566778999999999999999999999999999999999998 99999999999999998


Q ss_pred             HHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhH
Q 016902          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (380)
Q Consensus       151 ~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~  230 (380)
                      +++..++..                         .+...+++++++.|+|.|...+...++..+..|++.      +++.
T Consensus        83 ~l~~~~~~~-------------------------~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~~~~  131 (410)
T TIGR00885        83 FLFWPAAEI-------------------------MNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST------ATRR  131 (410)
T ss_pred             HHHHHHHhh-------------------------ccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH------HHHH
Confidence            776543210                         356778899999999999999999999999988766      7778


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhh--------------------------cchhhHHHHHHHHHHHHHHHHH
Q 016902          231 FNFFYLSVTVGAIVAFTLVVYIQM--------------------------EHGWGSAFGALAIAMGISNMLF  276 (380)
Q Consensus       231 ~~~~~~~~~iG~~i~~~i~~~i~~--------------------------~~gw~~~f~i~~~~~~~~~i~~  276 (380)
                      .++.+...++|..+++.+.+.+..                          ..+|++.|.+.+++.++..+++
T Consensus       132 ~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~  203 (410)
T TIGR00885       132 LNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLI  203 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888999999888876632                          2369999987776655444333

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.56  E-value=5.7e-13  Score=131.44  Aligned_cols=164  Identities=13%  Similarity=0.061  Sum_probs=130.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 016902           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (380)
Q Consensus        71 ~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~  150 (380)
                      .+.++...++..++...+...++ .+..++|.+....+++.+.+.+...++.+++|+++||+ |||++++++.+++.++.
T Consensus         5 f~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-grr~vl~~~~~~~~~~~   82 (393)
T PRK11195          5 FYAIMAAQFFSALADNALLFAAI-ALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-PKGRVMFIANGIKLLGC   82 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-CCchhhHHHHHHHHHHH
Confidence            34455566666665443433344 34678999999999999999999999999999999998 99999999999998887


Q ss_pred             HHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhH
Q 016902          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (380)
Q Consensus       151 ~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~  230 (380)
                      +++...                            .+   .++.+++.|++.++..|...+++.|.+|+++      |+++
T Consensus        83 ~~~~~~----------------------------~~---~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~------~~~a  125 (393)
T PRK11195         83 LLMLFG----------------------------IH---PLLAYGLVGIGAAAYSPAKYGILTELLPGEK------LVKA  125 (393)
T ss_pred             HHHHHH----------------------------HH---HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHH
Confidence            765543                            12   2667889999999999999999999999776      9999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHH
Q 016902          231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM  274 (380)
Q Consensus       231 ~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i  274 (380)
                      .+++.....+|..+||.+++++.+. .|+..+++.+++.+++++
T Consensus       126 ~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~~~  168 (393)
T PRK11195        126 NGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLAAL  168 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999774 477777666555444433

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.55  E-value=2.3e-13  Score=134.85  Aligned_cols=170  Identities=19%  Similarity=0.155  Sum_probs=131.3

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhh
Q 016902           77 NEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLC  156 (380)
Q Consensus        77 ~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~  156 (380)
                      ..++..++.......++.+ .++++.+..+.+.+.+.+.++..++.++.|+++||+ |||+++.++.++..++.+.+.+.
T Consensus        25 ~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-g~~~~l~~~~~~~~~~~~~~~~~  102 (417)
T PRK10489         25 ARFISIFGLGLLGVAVPVQ-IQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-DRKKLILLARGTCGLGFIGLALN  102 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-CCceEEEehHHHHHHHHHHHHHH
Confidence            3444444443333444444 456788999999999999999999999999999998 99999998888777776665432


Q ss_pred             hhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHH
Q 016902          157 ATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL  236 (380)
Q Consensus       157 ~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~  236 (380)
                      ...    ..                   .+...+++.+++.|++.+...++..++..|.+++++      |+++.++++.
T Consensus       103 ~~~----~~-------------------~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~  153 (417)
T PRK10489        103 AFL----PE-------------------PSLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN------LMQAGAITML  153 (417)
T ss_pred             HHc----CC-------------------CcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH------HHHHHHHHHH
Confidence            110    00                   245667788888899888888888889999998766      8999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHH
Q 016902          237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF  277 (380)
Q Consensus       237 ~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~  277 (380)
                      ...+|..+|+.+++++.+..+|++.|++.++..+++.++.+
T Consensus       154 ~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~  194 (417)
T PRK10489        154 TVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLL  194 (417)
T ss_pred             HHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998888999999887776665554443

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.55  E-value=3.8e-13  Score=135.28  Aligned_cols=151  Identities=14%  Similarity=0.092  Sum_probs=122.6

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCccccc
Q 016902           93 VTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRI  172 (380)
Q Consensus        93 ~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~~~c~~~  172 (380)
                      ...+.+++|++..+.+++.+.+..+..++.+++|+++||+ |||++++++.++..++.+++..+                
T Consensus        42 ~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~----------------  104 (455)
T TIGR00892        42 FKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRF-GCRPVVIAGGLLASLGMILASFS----------------  104 (455)
T ss_pred             HHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc-CchHHHHhhHHHHHHHHHHHHHh----------------
Confidence            4456789999999999999999998899999999999997 99999999998888887776654                


Q ss_pred             ccccCCCCCCcchhHHHHHH-HHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 016902          173 SQLLGSCEPAKSWQMLYLYT-VLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY  251 (380)
Q Consensus       173 ~~~~~~c~~~~~~~~~~l~~-~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~  251 (380)
                                  .+...+++ .+++.|++.+...+...++..+.++ ++      |+...++++.+..+|..+++.++++
T Consensus       105 ------------~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~------r~~a~g~~~~~~~~g~~~~~~l~~~  165 (455)
T TIGR00892       105 ------------SNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RR------RPLANGLAMAGSPVFLSTLAPLNQY  165 (455)
T ss_pred             ------------hhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hh------HHHHHHHHHhcccHHHHHHHHHHHH
Confidence                        23444444 4577888888765666677788885 44      8999999999999999999999999


Q ss_pred             hhhcchhhHHHHHHHHHHHHHHHHHHhh
Q 016902          252 IQMEHGWGSAFGALAIAMGISNMLFFIG  279 (380)
Q Consensus       252 i~~~~gw~~~f~i~~~~~~~~~i~~~~~  279 (380)
                      +.+..||++.|++.+++.+++.+..++.
T Consensus       166 l~~~~gwr~~f~~~~~~~~~~~v~~~~~  193 (455)
T TIGR00892       166 LFESFGWRGSFLILGGLLLHCCVCGALM  193 (455)
T ss_pred             HHHHhChHHHHHHHHHHHHHHHHHHHHh
Confidence            9998999999998888776655544433

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.55  E-value=7.4e-14  Score=134.94  Aligned_cols=152  Identities=13%  Similarity=0.053  Sum_probs=130.9

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCccc
Q 016902           91 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD  170 (380)
Q Consensus        91 ~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~~~c~  170 (380)
                      ...+++.+++|++..+.+++.+.+.++..++.+++|+++||+ |||++++++.++..++.+++.++              
T Consensus        16 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~--------------   80 (379)
T TIGR00881        16 LAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-NPRVFLPIGLILCAIVNLFFGFS--------------   80 (379)
T ss_pred             hhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-CCeehhHHHHHHHHHHHHHHHHh--------------
Confidence            345678889999999999999999999999999999999998 99999999999998888887764              


Q ss_pred             ccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHH-HHH
Q 016902          171 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF-TLV  249 (380)
Q Consensus       171 ~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~-~i~  249 (380)
                                    .+...+++++++.|++.+...+...++.+|.+++++      |+..+++++.+..+|..+++ .+.
T Consensus        81 --------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~  140 (379)
T TIGR00881        81 --------------TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGLLPPLVL  140 (379)
T ss_pred             --------------hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHHHHHHHH
Confidence                          356778889999999999999999999999999876      89999999999999999998 566


Q ss_pred             HHhhhcchhhHHHHHHHHHHHHHHHHHH
Q 016902          250 VYIQMEHGWGSAFGALAIAMGISNMLFF  277 (380)
Q Consensus       250 ~~i~~~~gw~~~f~i~~~~~~~~~i~~~  277 (380)
                      ..+.+..+|++.|++.+++.++..++.+
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (379)
T TIGR00881       141 FGIAELYSWHWVFIVPGIIAIIVSLICF  168 (379)
T ss_pred             HHHHhcCCchhHHHHHHHHHHHHHHHHh
Confidence            6777778999999887776655444433

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.54  E-value=7.4e-13  Score=129.78  Aligned_cols=152  Identities=16%  Similarity=0.188  Sum_probs=130.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 016902           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA  148 (380)
Q Consensus        69 ~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~l  148 (380)
                      +.++.+++..++..+....+...++.|+. ++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-g~k~~~~~~~~~~~~   83 (381)
T PRK03633          6 RPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-GFNRSYYLASLIFAA   83 (381)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            45777788888888887767777777665 7899999999999999999999999999999998 999999999999988


Q ss_pred             HHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhh
Q 016902          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD  228 (380)
Q Consensus       149 g~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~  228 (380)
                      +.+++.++                            .+...+++++++.|++.++..+...+...+..++++      |+
T Consensus        84 ~~~~~~~~----------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~  129 (381)
T PRK03633         84 GCAGLGLM----------------------------VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN------RG  129 (381)
T ss_pred             HHHHHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HH
Confidence            88776664                            356778889999999999888887777788887655      89


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 016902          229 RFFNFFYLSVTVGAIVAFTLVVYIQMEH  256 (380)
Q Consensus       229 ~~~~~~~~~~~iG~~i~~~i~~~i~~~~  256 (380)
                      +.++++....++|..+++.+++++.+..
T Consensus       130 ~~~~~~~~~~~~g~~~g~~~~~~l~~~~  157 (381)
T PRK03633        130 RLLAAYMMVYYLGTVLGQLLVSKVSTEL  157 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            9999999999999999999999887653

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.54  E-value=1.9e-12  Score=129.20  Aligned_cols=195  Identities=8%  Similarity=-0.055  Sum_probs=135.9

Q ss_pred             cccC-CCCCCCcccCCCh---HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016902           52 VNVH-GKPIADLSKTGGW---IAALFIFGNEMAERMAYFGLSVNMVTFMFY-VMHKSFADSSNAVNNFLGISQASSVLGG  126 (380)
Q Consensus        52 ~~~~-~~p~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~-~~~~s~~~a~~~~~~~~~~~~~~~l~~g  126 (380)
                      .||+ +||. -|.++++.   |++++..+..++. +....+.+.+..++.+ ++|++..+.+++.+++.+++.++.++.|
T Consensus        14 ~~w~pe~~~-~w~~~~~~~a~r~l~~s~~~f~~~-F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G   91 (462)
T PRK15034         14 RDWKPENPA-FWENKGKHIARRNLWISVSCLLLA-FCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYS   91 (462)
T ss_pred             cCCCCCChH-HHhhcCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4554 4455 66666554   6655555544443 4434444555666655 7999999999999999999999989999


Q ss_pred             HHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhh
Q 016902          127 FLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRP  206 (380)
Q Consensus       127 ~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~  206 (380)
                      ++.||+ |.|+++.++.++..+.++++.++...  .                     ..++..+++.+++.|++ |+..+
T Consensus        92 ~l~Dr~-G~R~v~~~~~ll~~i~~~~~~~a~~~--~---------------------~~s~~~lli~r~l~Gig-g~~f~  146 (462)
T PRK15034         92 FMVPIF-GGRRWTVFSTAILIIPCVWLGIAVQN--P---------------------NTPFGIFIVIALLCGFA-GANFA  146 (462)
T ss_pred             HHHHHh-CChHHHHHHHHHHHHHHHHHHHHHcc--c---------------------CCCHHHHHHHHHHHHHH-HHhHH
Confidence            999998 99999999999988888777653100  0                     02577889999999998 66778


Q ss_pred             hhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHH-----hhh-------------cchhhHHHHHHHHH
Q 016902          207 CVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY-----IQM-------------EHGWGSAFGALAIA  268 (380)
Q Consensus       207 ~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~-----i~~-------------~~gw~~~f~i~~~~  268 (380)
                      .....++..||+++      |+.+++++....++|..+++.+...     +..             ..+|+..+++..++
T Consensus       147 ~~~~~vs~wfp~~~------rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~  220 (462)
T PRK15034        147 SSMGNISFFFPKAK------QGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPL  220 (462)
T ss_pred             HHHHHHHHHCCHhH------hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHH
Confidence            88899999999877      9999999866666666554444332     212             23466666665555


Q ss_pred             HHHHHHHHHhh
Q 016902          269 MGISNMLFFIG  279 (380)
Q Consensus       269 ~~~~~i~~~~~  279 (380)
                      .++..++.++.
T Consensus       221 ~iv~~i~~~~~  231 (462)
T PRK15034        221 LAIATIAAWSG  231 (462)
T ss_pred             HHHHHHHHHHh
Confidence            55555444443

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.53  E-value=9.9e-13  Score=132.57  Aligned_cols=176  Identities=16%  Similarity=0.070  Sum_probs=132.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 016902           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA  148 (380)
Q Consensus        69 ~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~l  148 (380)
                      +.+|.+.+..++....++++..+++.|+++.+|++..+++.....+.++..++.+++|+++||+ |||+.+.+...+..+
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-g~r~~~~~~~~~~~~  336 (467)
T PRK09556        258 PVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA-NGRRALVACIALALI  336 (467)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHHHHHHHH
Confidence            3466777777777777888888999999999999999999999989999999999999999998 998877665444443


Q ss_pred             HHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhh
Q 016902          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD  228 (380)
Q Consensus       149 g~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~  228 (380)
                      +..++.+..      .                    .+...+++.+++.|++..+..........|.+|++.      ++
T Consensus       337 ~~~~~~~~~------~--------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~------~g  384 (467)
T PRK09556        337 IFTLGVYQH------A--------------------TSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKA------IG  384 (467)
T ss_pred             HHHHHHHHh------c--------------------CcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhh------HH
Confidence            332222210      0                    123344556666665544444444466779999877      99


Q ss_pred             hHHHHHHHHHHH-HHHHHHHHHHHhhh------------cchhhHHHHHHHHHHHHHHHHHH
Q 016902          229 RFFNFFYLSVTV-GAIVAFTLVVYIQM------------EHGWGSAFGALAIAMGISNMLFF  277 (380)
Q Consensus       229 ~~~~~~~~~~~i-G~~i~~~i~~~i~~------------~~gw~~~f~i~~~~~~~~~i~~~  277 (380)
                      ++.++.+...++ |+.++|.+.|++.+            ..||+..|++..++.++++++.+
T Consensus       385 ~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~  446 (467)
T PRK09556        385 VANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA  446 (467)
T ss_pred             HHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence            999999888886 77999999999998            56899999888777777665544

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.52  E-value=7.4e-14  Score=140.74  Aligned_cols=154  Identities=16%  Similarity=0.081  Sum_probs=125.1

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccc
Q 016902           92 MVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR  171 (380)
Q Consensus        92 l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~~~c~~  171 (380)
                      ....+.+++|++..+.+++.+.+..++.++.+++|+++||+ |||+++.++.++..++.+++....           |. 
T Consensus        51 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~~-----------~~-  117 (467)
T PRK09556         51 AQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK-NTKQFLPFLLILSAICMLGFGASL-----------GS-  117 (467)
T ss_pred             hhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-CccchHHHHHHHHHHHHHHHHHHH-----------hc-
Confidence            35567889999999999999999999999999999999998 999999888877776666555421           00 


Q ss_pred             cccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 016902          172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY  251 (380)
Q Consensus       172 ~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~  251 (380)
                                 ...+...+++.|++.|++.+...++...+++|.+|+++      |+.+++++..+.++|+.+++.+..+
T Consensus       118 -----------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------rg~a~gi~~~~~~lG~~l~~~i~~~  180 (467)
T PRK09556        118 -----------GSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------RGRFLGFWNISHNLGGAGAGGVALW  180 (467)
T ss_pred             -----------ccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------eeeeEEeeecccchhhhHHHHHHHH
Confidence                       00357788899999999999888999999999999888      9999999999999999999888877


Q ss_pred             hhhcc---hhhHHHHHHHHHHHHHHHH
Q 016902          252 IQMEH---GWGSAFGALAIAMGISNML  275 (380)
Q Consensus       252 i~~~~---gw~~~f~i~~~~~~~~~i~  275 (380)
                      +....   +|+..|.+.+++.++..++
T Consensus       181 ~~~~~~~~~~~~~f~~~g~~~~~~~i~  207 (467)
T PRK09556        181 GANYFFDGHVIGMFIFPSIIALIIGFI  207 (467)
T ss_pred             HHHhhccCcchhHHHHHHHHHHHHHHH
Confidence            76543   5888887766655544333

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.52  E-value=7.8e-13  Score=132.77  Aligned_cols=153  Identities=10%  Similarity=0.063  Sum_probs=121.1

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCccc
Q 016902           91 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD  170 (380)
Q Consensus        91 ~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~~~c~  170 (380)
                      ...+|+.++ |++..+.+++.+.+.++..++.+++|+++||+ |||++++++.++..++.+++.+...           .
T Consensus        50 ~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-g~k~~l~~~~~~~~i~~~~~~~~~~-----------~  116 (452)
T PRK11273         50 LAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPW-----------A  116 (452)
T ss_pred             HhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-CCchhHHHHHHHHHHHHHHHHhhhc-----------c
Confidence            345677777 99999999999999999999999999999998 9999999999988888877765310           0


Q ss_pred             ccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHH-HHHHHH
Q 016902          171 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAI-VAFTLV  249 (380)
Q Consensus       171 ~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~-i~~~i~  249 (380)
                                   ..+...+++.+++.|++.|...+.......|.+++++      |+.++++++.+.++|+. +++++.
T Consensus       117 -------------~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~l~~  177 (452)
T PRK11273        117 -------------TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGLPPLLFL  177 (452)
T ss_pred             -------------cccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH------HHHHHHHHHHHHHhhhhHHHHHHH
Confidence                         0245667888889999988888888888999999777      99999999999998864 455544


Q ss_pred             HHhhhcchhhHHHHHHHHHHHHHHHH
Q 016902          250 VYIQMEHGWGSAFGALAIAMGISNML  275 (380)
Q Consensus       250 ~~i~~~~gw~~~f~i~~~~~~~~~i~  275 (380)
                      ..+....||++.|++.+++.++..++
T Consensus       178 ~~~~~~~gw~~~f~i~~~~~~~~~~l  203 (452)
T PRK11273        178 LGMAWFNDWHAALYMPAFAAILVALF  203 (452)
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            33333458999999877765554433

>PRK09952 shikimate transporter; Provisional

Probab=99.52  E-value=1.9e-12  Score=129.53  Aligned_cols=178  Identities=16%  Similarity=0.160  Sum_probs=125.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc--CCCHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhhcchhHH
Q 016902           66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM--HKSFADSSNAV-----NNFLGISQASSVLGGFLADAYLGRYWT  138 (380)
Q Consensus        66 ~~~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~--~~s~~~a~~~~-----~~~~~~~~~~~l~~g~lsD~~~GR~~~  138 (380)
                      .+|+..+...+..+++.+....+....+.++.+++  +.+... +.+.     .+..++..++.++.|+++||+ |||++
T Consensus        19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~-Grr~~   96 (438)
T PRK09952         19 RARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDRL-GRKRM   96 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-ccHHH
Confidence            34555666666667776666544433444555555  666653 3322     233344567788899999998 99999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCC
Q 016902          139 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE  218 (380)
Q Consensus       139 i~i~~~l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~  218 (380)
                      ++++.+++.++.++++++......                    .-.....+++.|++.|++.|+..+....+..|.+|+
T Consensus        97 l~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~  156 (438)
T PRK09952         97 LMLTVWMMGIATALIGLLPSFSTI--------------------GWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPK  156 (438)
T ss_pred             HHHHHHHHHHHHHHHhcCCcHHHH--------------------HHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCC
Confidence            999999999998887775110000                    000123578889999999999999999999999998


Q ss_pred             CCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh--------hcchhhHHHHHHHHHHHH
Q 016902          219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAIAMGI  271 (380)
Q Consensus       219 ~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~--------~~~gw~~~f~i~~~~~~~  271 (380)
                      ++      |+...+..+.+..+|..++..+..++.        ...|||+.|++.++..++
T Consensus       157 ~~------rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~  211 (438)
T PRK09952        157 NK------KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI  211 (438)
T ss_pred             CC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH
Confidence            77      888888888888888888877666554        247999999887665443

>PRK15075 citrate-proton symporter; Provisional

Probab=99.52  E-value=1.6e-12  Score=129.89  Aligned_cols=175  Identities=15%  Similarity=0.077  Sum_probs=124.2

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHH-HHHHHHHHH-----HHHHHHHHHHHHHhhcchhHH
Q 016902           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSS-NAVNNFLGI-----SQASSVLGGFLADAYLGRYWT  138 (380)
Q Consensus        65 ~~~~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~-~~~~~~~~~-----~~~~~l~~g~lsD~~~GR~~~  138 (380)
                      ..||+.....++..+++.+....+. .+.+++.++++.+..+.+ ...+....+     ..++.++.|+++||+ |||+.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~   88 (434)
T PRK15075         11 ESKARAILRVTSGNFLEMFDFFLFG-FYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV-GRRKG   88 (434)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-chHHH
Confidence            3455666666666666666665443 455678889998776543 333322222     235778999999998 99999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCC
Q 016902          139 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE  218 (380)
Q Consensus       139 i~i~~~l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~  218 (380)
                      ++++.+++.++.++++++.....+.                    ......++++|++.|++.|+..++...+.+|.+|+
T Consensus        89 l~~~~~~~~~~~~l~~~~~~~~~~~--------------------~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~  148 (434)
T PRK15075         89 LIVTLSIMASGTLLIAFVPGYATIG--------------------LAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATP  148 (434)
T ss_pred             HHHHHHHHHHHHHHHHhCCcHHHHH--------------------HHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCc
Confidence            9999999999988887751100000                    00012468889999999999999899999999998


Q ss_pred             CCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh--------hhcchhhHHHHHHHH
Q 016902          219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI--------QMEHGWGSAFGALAI  267 (380)
Q Consensus       219 ~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i--------~~~~gw~~~f~i~~~  267 (380)
                      ++      |+...+++....++|..+++.+++.+        .+..|||+.|++.++
T Consensus       149 ~~------rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~  199 (434)
T PRK15075        149 GR------KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL  199 (434)
T ss_pred             cc------chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence            87      99999998887777777777666654        246799999987543

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.51  E-value=2.1e-12  Score=131.36  Aligned_cols=179  Identities=15%  Similarity=0.124  Sum_probs=130.6

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Q 016902           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYV-----MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAI  141 (380)
Q Consensus        67 ~~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~-----~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i  141 (380)
                      +++.+.++.+..+...+....+.. ....+..+     .+.+..+.+++.+.+.++..++.+++|+++||+ |||+++.+
T Consensus        14 ~~~~~~~~~~~~~~~g~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~-Grr~~~~~   91 (502)
T TIGR00887        14 HFRAIVIAGVGFFTDSYDLFCISL-VTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKL-GRKRVYGM   91 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHH
Confidence            344444455555555444433332 22333332     234556678899999999999999999999998 99999999


Q ss_pred             HHHHHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCc
Q 016902          142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK  221 (380)
Q Consensus       142 ~~~l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~  221 (380)
                      +.+++.++.++++++..   ..+                   ..+...++++|++.|++.|+..+..+.+.+|.+|.+. 
T Consensus        92 ~~~~~~v~~~~~~~~~~---~~~-------------------~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~-  148 (502)
T TIGR00887        92 ELIIMIIATVASGLSPG---SSP-------------------KSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKW-  148 (502)
T ss_pred             HHHHHHHHHHHHHHccC---ccc-------------------chHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhh-
Confidence            99999998887766411   000                   0235678999999999999999999999999999888 


Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh-----------------------cchhhHHHHHHHHHHHHHHHH
Q 016902          222 DYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-----------------------EHGWGSAFGALAIAMGISNML  275 (380)
Q Consensus       222 ~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~-----------------------~~gw~~~f~i~~~~~~~~~i~  275 (380)
                           |+.+.++++....+|..+++.+..++..                       ..+||+.|.+.++..++.++.
T Consensus       149 -----Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~  220 (502)
T TIGR00887       149 -----RGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYF  220 (502)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHH
Confidence                 9999999999999998888877665421                       237999998776655544443

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.51  E-value=5.3e-13  Score=128.57  Aligned_cols=178  Identities=22%  Similarity=0.247  Sum_probs=143.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chhHHHHH-HHHHH
Q 016902           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL-GRYWTIAI-FTTIY  146 (380)
Q Consensus        69 ~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~-GR~~~i~i-~~~l~  146 (380)
                      |.+|++.+..++..+.-|++..+.+.|+.+..|++..++.+..+.|-.+...++++.||+||+++ |||....+ +.+..
T Consensus       252 k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i  331 (448)
T COG2271         252 KLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLI  331 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence            34789999999999999999999999999999999999999999999999999999999999998 88765543 33334


Q ss_pred             HHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhh
Q 016902          147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (380)
Q Consensus       147 ~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~  226 (380)
                      ++..+...++       |+                   .+..+..+.++++|+...|....+.....|..|.+.      
T Consensus       332 ~~~~~~~w~~-------~~-------------------~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~A------  379 (448)
T COG2271         332 TASLVLYWLA-------PN-------------------GSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKA------  379 (448)
T ss_pred             HHHHHHHHcC-------CC-------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhh------
Confidence            4444444332       21                   356777778888999999998888888888888666      


Q ss_pred             hhhHHHHHHHHHHH-HHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHh
Q 016902          227 LDRFFNFFYLSVTV-GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (380)
Q Consensus       227 r~~~~~~~~~~~~i-G~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~~  278 (380)
                      -|++.+...+...+ |+.++....+++.|.+||..+|.+..++.+++.++++.
T Consensus       380 aGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~  432 (448)
T COG2271         380 AGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLP  432 (448)
T ss_pred             ccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHH
Confidence            78888887666666 88888888899988899999998877777766665544

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.51  E-value=3.9e-12  Score=125.30  Aligned_cols=165  Identities=10%  Similarity=0.070  Sum_probs=121.5

Q ss_pred             HHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhh
Q 016902           79 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCAT  158 (380)
Q Consensus        79 ~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~  158 (380)
                      ++....++.+..+++.|+++++|++..+++.+.+...++..++.+++|+++||+ |||+.+..+.+...+....+...  
T Consensus       226 ~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~--  302 (393)
T PRK15011        226 TLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-GKRFLMRVAAVAGVCFYAGMLMA--  302 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHH--
Confidence            333344444556788899999999999888888777777788899999999998 99998877665554443332221  


Q ss_pred             cccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHH
Q 016902          159 MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSV  238 (380)
Q Consensus       159 ~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~  238 (380)
                                                .+...+++.+++.+++.|...+....+..|.+|+ .      ++++.++++...
T Consensus       303 --------------------------~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~------~g~~~~~~~~~~  349 (393)
T PRK15011        303 --------------------------HSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-Q------AGSATTLYTNTS  349 (393)
T ss_pred             --------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-C------cchHHHHHHHHH
Confidence                                      1233445556666666665556666777888873 3      788888888888


Q ss_pred             HHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHhh
Q 016902          239 TVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG  279 (380)
Q Consensus       239 ~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~~~  279 (380)
                      ++|..+++.+++++.+..||+..|++.+++.++++++.+..
T Consensus       350 ~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~  390 (393)
T PRK15011        350 RVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRI  390 (393)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999998899999988777777766655443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.50  E-value=6.5e-13  Score=133.63  Aligned_cols=146  Identities=15%  Similarity=0.156  Sum_probs=125.6

Q ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccccccccCC
Q 016902           99 VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGS  178 (380)
Q Consensus        99 ~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~  178 (380)
                      +++++..+.+.+.+.+..++.++.+++|+++||+ |||+++.++.++..++.+++..+..                    
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~--------------------  128 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY-VFKWSIGIGMFLSSVISIVIPWAAG--------------------  128 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh-CcchhhHHHHHHHHHHHHHHHHHHH--------------------
Confidence            6889999999999999999999999999999998 9999999999888887766544311                    


Q ss_pred             CCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcc-h
Q 016902          179 CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-G  257 (380)
Q Consensus       179 c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~-g  257 (380)
                            .+...+++.+++.|++.++..+....+.+|.+|+++      |+++.++++.+..+|..+++.+.+++.+.. |
T Consensus       129 ------~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~g  196 (465)
T TIGR00894       129 ------GGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGG  196 (465)
T ss_pred             ------cCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence                  234568889999999999999999999999999877      999999999999999999999999998884 9


Q ss_pred             hhHHHHHHHHHHHHHHHHHH
Q 016902          258 WGSAFGALAIAMGISNMLFF  277 (380)
Q Consensus       258 w~~~f~i~~~~~~~~~i~~~  277 (380)
                      |++.|++.++..++..++++
T Consensus       197 w~~~f~i~~~~~~~~~~~~~  216 (465)
T TIGR00894       197 WPMIFYVFGIVGCAWSLLWF  216 (465)
T ss_pred             CCeehhhhhHHHHHHHHHHH
Confidence            99999988776655544433

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.49  E-value=6.5e-12  Score=123.71  Aligned_cols=173  Identities=13%  Similarity=0.137  Sum_probs=119.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcchhHHHHH-HHHHHHH
Q 016902           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNF-LGISQASSVLGGFLADAYLGRYWTIAI-FTTIYLA  148 (380)
Q Consensus        71 ~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~-~~~~~~~~l~~g~lsD~~~GR~~~i~i-~~~l~~l  148 (380)
                      .+..+...++..++...+...++.|+.+++|++..+.+++.+.. ..+..++++++++ +||+ ||||.+++ +.++..+
T Consensus        17 ~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~-g~r~~~~~~~~~~~~~   94 (393)
T PRK15011         17 STAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKR-GDRKSLIVFCCLLGVL   94 (393)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-cchhHHHHHHHHHHHH
Confidence            45555567777788777788899999999999999999987765 4466666666666 9998 99887654 4444445


Q ss_pred             HHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHH-HHHHHHHhccchhhhhhhHhhccCCCCCchhhhhh
Q 016902          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYT-VLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (380)
Q Consensus       149 g~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~-~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r  227 (380)
                      +..++.++                            .+...+++ ++++.+++ +...+....+..|..+++.   | ..
T Consensus        95 ~~~~~~~~----------------------------~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~-~~  141 (393)
T PRK15011         95 ACTLFAWN----------------------------RNYFVLLFVGVFLSSFG-STANPQMFALAREHADKTG---R-EA  141 (393)
T ss_pred             HHHHHHHh----------------------------hHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHhhhcc---c-hH
Confidence            55444443                            23444433 34444444 4556667777777665443   0 12


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHh
Q 016902          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (380)
Q Consensus       228 ~~~~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~~  278 (380)
                      +.+.++.+.+.++|..++|.+++++.++.||++.|++.++..++..+..+.
T Consensus       142 ~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~  192 (393)
T PRK15011        142 VMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWL  192 (393)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHh
Confidence            344567888999999999999999998899999998877766555444443

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.49  E-value=1.2e-12  Score=130.92  Aligned_cols=155  Identities=12%  Similarity=0.070  Sum_probs=124.6

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccc
Q 016902           92 MVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR  171 (380)
Q Consensus        92 l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~~~c~~  171 (380)
                      ...++++ +|++..+.+++.+.+.++..++.+++|+++||+ |||+.+.++.++..++.+++.+...   .         
T Consensus        49 ~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~---~---------  114 (438)
T TIGR00712        49 AMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILSAAVMLLMGFVPW---A---------  114 (438)
T ss_pred             hhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc-CCceehHHHHHHHHHHHHHHhcccc---c---------
Confidence            3456665 599999999999999999999999999999998 9999999988888887776554310   0         


Q ss_pred             cccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 016902          172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY  251 (380)
Q Consensus       172 ~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~  251 (380)
                                  ..+...+++.+++.|++.|...+.....+.|.+|+++      |+.++++++...++|+.+++.+.++
T Consensus       115 ------------~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~l~~~  176 (438)
T TIGR00712       115 ------------TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------RGTIVSIWNCAHNIGGGIPPLLVLL  176 (438)
T ss_pred             ------------cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------chhHHHHHHHHHHhHhHHHHHHHHH
Confidence                        0235566778889999998888888899999999887      9999999999999999998887765


Q ss_pred             h-hhcchhhHHHHHHHHHHHHHHHHHHh
Q 016902          252 I-QMEHGWGSAFGALAIAMGISNMLFFI  278 (380)
Q Consensus       252 i-~~~~gw~~~f~i~~~~~~~~~i~~~~  278 (380)
                      + ....+|++.|++.+++.++..++.++
T Consensus       177 ~~~~~~~w~~~f~~~~~~~~i~~~~~~~  204 (438)
T TIGR00712       177 GMAWFNDWHAALYFPAICAIIVALFAFA  204 (438)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            4 44568999999877776665444333

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.48  E-value=1.6e-12  Score=129.11  Aligned_cols=181  Identities=7%  Similarity=-0.140  Sum_probs=118.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 016902           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (380)
Q Consensus        70 ~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg  149 (380)
                      ..+...+..++..++++.+.+.++.|+++++|++..+.+.+.+.+.++..++++++|+++||+ |||++++++..+..++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~-g~r~~~~~~~~~~~~~   89 (420)
T PRK09528         11 NYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKL-GLKKHLLWIISGLLVL   89 (420)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHH
Confidence            355566667777777777888999999999999999999999999999999999999999998 9999998876665554


Q ss_pred             HHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhh
Q 016902          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (380)
Q Consensus       150 ~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~  229 (380)
                      ...+......+                        ......+.+.++.++..+.......+...+..+..    .++++.
T Consensus        90 ~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~g~  141 (420)
T PRK09528         90 FGPFFIYVFAP------------------------LLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERV----SRRSGF  141 (420)
T ss_pred             HHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHH----Hhhccc
Confidence            43322210000                        00001112222223222222222222222222211    112566


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHhhc
Q 016902          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT  280 (380)
Q Consensus       230 ~~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~~~~  280 (380)
                      .++..+...++|..+++.+++++.+ .+|++.|++.+++.++.+++.+..+
T Consensus       142 ~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~  191 (420)
T PRK09528        142 EYGRARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAK  191 (420)
T ss_pred             cchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhccc
Confidence            6777777788999999999998876 4899999887776666555544433

>PRK03699 putative transporter; Provisional

Probab=99.48  E-value=3.8e-12  Score=125.41  Aligned_cols=173  Identities=14%  Similarity=0.150  Sum_probs=131.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 016902           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (380)
Q Consensus        70 ~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg  149 (380)
                      ..+.+.+..++..+..+++..+++.|+++.+|++..+++...+.+.++..++.+++|+++||+ |||+.+.....+..++
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~l~~~~~~~~~~  284 (394)
T PRK03699        206 GVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-DLQRILTVLAGLALVL  284 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh-chhhHHHHHHHHHHHH
Confidence            345555555666677778888999999999999999999999999999999999999999998 9999888776665555


Q ss_pred             HHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhh
Q 016902          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (380)
Q Consensus       150 ~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~  229 (380)
                      ..++...                            .+...+.+..++.|++.++..+...++..++.+.+       ++.
T Consensus       285 ~~~~~~~----------------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-------~~~  329 (394)
T PRK03699        285 MYLFVNT----------------------------DDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA-------SPK  329 (394)
T ss_pred             HHHHHHc----------------------------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-------CHH
Confidence            4443322                            12333445556777777777788788888877643       345


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHh
Q 016902          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (380)
Q Consensus       230 ~~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~~  278 (380)
                      ..++.+....+|..++|.+.+++.+..||+..|++.+++.+++.++...
T Consensus       330 ~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~  378 (394)
T PRK03699        330 LVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCIL  378 (394)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHH
Confidence            5677777788999999999999999899999998777776666544333

>TIGR00898 2A0119 cation transport protein

Probab=99.48  E-value=1.1e-12  Score=133.17  Aligned_cols=147  Identities=12%  Similarity=0.104  Sum_probs=125.8

Q ss_pred             HHHHHhcCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCccc
Q 016902           94 TFMFYVMHKS---FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD  170 (380)
Q Consensus        94 ~yl~~~~~~s---~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~~~c~  170 (380)
                      ..+.+++|++   ..+.++..+++.++..++.++.|+++||+ |||++++++.++..++.++.+++              
T Consensus       113 ~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~-Grr~~~~~~~~~~~i~~~~~~~~--------------  177 (505)
T TIGR00898       113 STIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF-GRKKVLLLSTLVTAVSGVLTAFS--------------  177 (505)
T ss_pred             ccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHc--------------
Confidence            3467789998   88899999999999999999999999997 99999999999888888777664              


Q ss_pred             ccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 016902          171 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV  250 (380)
Q Consensus       171 ~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~  250 (380)
                                    .+...+++++++.|++.++..+...+++.|.++++.      |+...+++..+..+|..+++.++.
T Consensus       178 --------------~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~  237 (505)
T TIGR00898       178 --------------PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAY  237 (505)
T ss_pred             --------------ccHHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          357788999999999999999999999999999877      889988888888999999888876


Q ss_pred             HhhhcchhhHHHHHHHHHHHHHHHHHHh
Q 016902          251 YIQMEHGWGSAFGALAIAMGISNMLFFI  278 (380)
Q Consensus       251 ~i~~~~gw~~~f~i~~~~~~~~~i~~~~  278 (380)
                      ++.+   |++.|++.++..++..+..++
T Consensus       238 ~~~~---wr~~~~~~~i~~~~~~~~~~~  262 (505)
T TIGR00898       238 FIPD---WRWLQLAVSLPTFLFFLLSWF  262 (505)
T ss_pred             HhhH---HHHHHHHHHHHHHHHHHHHHh
Confidence            6653   999998877766655554433

>PRK09952 shikimate transporter; Provisional

Probab=99.48  E-value=7.5e-12  Score=125.22  Aligned_cols=181  Identities=12%  Similarity=0.006  Sum_probs=129.2

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 016902           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY  146 (380)
Q Consensus        67 ~~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~  146 (380)
                      +++....++...++..+.+|.+.++++.|+++.+|++......+.........++.+++|+++||+ |||++++++.++.
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~-grr~~~~~~~~~~  326 (438)
T PRK09952        248 HPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRF-GRRRVYITGALIG  326 (438)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHH
Confidence            334444444456667778888888999999999999887655555556666677888999999997 9999988877665


Q ss_pred             HHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhh
Q 016902          147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (380)
Q Consensus       147 ~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~  226 (380)
                      .++.+++.+...     ..                   .....+++..++.+++.+...+...++.+|.+|.+.      
T Consensus       327 ~~~~~~~~~~~~-----~~-------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~------  376 (438)
T PRK09952        327 TLSAFPFFMALE-----AQ-------------------SIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASY------  376 (438)
T ss_pred             HHHHHHHHHHHH-----cC-------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcch------
Confidence            554433332210     00                   122333445556677777778888899999999877      


Q ss_pred             hhhHHHH-HHHHHHHHHHHHHHHHHHhhhcc--hhhHHHHHHHHHHHHHHHHHHh
Q 016902          227 LDRFFNF-FYLSVTVGAIVAFTLVVYIQMEH--GWGSAFGALAIAMGISNMLFFI  278 (380)
Q Consensus       227 r~~~~~~-~~~~~~iG~~i~~~i~~~i~~~~--gw~~~f~i~~~~~~~~~i~~~~  278 (380)
                      |+++.++ +.++..+|+.++|.+.+++.+..  +|...+.+.+++.+++.+..+.
T Consensus       377 r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~  431 (438)
T PRK09952        377 RYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALL  431 (438)
T ss_pred             hHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence            9989888 66666789999999999997744  4788887777776666655443

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.47  E-value=4.7e-12  Score=133.38  Aligned_cols=132  Identities=9%  Similarity=0.009  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHH
Q 016902          111 VNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYL  190 (380)
Q Consensus       111 ~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l  190 (380)
                      ..+..++..++.+++|+++||+ |||++++++.++..++.+++.+.                            .+...+
T Consensus       601 ~~l~~l~~i~G~il~g~L~Dr~-GRr~~l~~~~~lsai~~ll~~~~----------------------------~s~~~l  651 (742)
T TIGR01299       601 NFLGTLAVLPGNIVSALLMDKI-GRLRMLAGSMVLSCISCFFLSFG----------------------------NSESAM  651 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHH----------------------------ccHHHH
Confidence            3445577788999999999997 99999999988888877766653                            123345


Q ss_pred             HHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHH
Q 016902          191 YTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMG  270 (380)
Q Consensus       191 ~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~  270 (380)
                      ++.+++.+++.++..+...++.+|.+|++.      |++++++.+....+|++++|.+++++.+. +...+|++.+++++
T Consensus       652 l~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~------Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~ll  724 (742)
T TIGR01299       652 IALLCLFGGLSIAAWNALDVLTVELYPSDK------RATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALA  724 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHH
Confidence            555667777777778889999999999887      99999999999999999999999987653 45667777777666


Q ss_pred             HHHHHHHh
Q 016902          271 ISNMLFFI  278 (380)
Q Consensus       271 ~~~i~~~~  278 (380)
                      ++.++.++
T Consensus       725 l~~ll~~~  732 (742)
T TIGR01299       725 CGGLLALK  732 (742)
T ss_pred             HHHHHHHh
Confidence            65554443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.47  E-value=6.7e-12  Score=123.46  Aligned_cols=171  Identities=13%  Similarity=0.078  Sum_probs=129.9

Q ss_pred             HHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhc
Q 016902           80 AERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM  159 (380)
Q Consensus        80 ~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~  159 (380)
                      +..+.++.+..+++.|+.+ .|++  ..+.....+.++..++.++.|+++||+ ||++.+.++.++..++.+++...   
T Consensus       227 ~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~---  299 (399)
T PRK05122        227 LASIGFGTIATFITLYYAA-RGWD--GAALALTLFGVAFVGARLLFGNLINRL-GGLRVAIVSLLVEILGLLLLWLA---  299 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHH-cccc--cchHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHh---
Confidence            3445555566777777754 4653  345556677777888889999999997 99999988888777777665543   


Q ss_pred             ccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHH
Q 016902          160 KVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT  239 (380)
Q Consensus       160 ~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~  239 (380)
                                               .+...++++.++.|++.+...+.......|.+|++.      |++.+++++....
T Consensus       300 -------------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~  348 (399)
T PRK05122        300 -------------------------PSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQN------RGAALGAYSVFLD  348 (399)
T ss_pred             -------------------------ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHH
Confidence                                     234455667788899988888877788888888766      9999999999999


Q ss_pred             HHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHhhcccccccCC
Q 016902          240 VGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLP  288 (380)
Q Consensus       240 iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~~~~~~~  288 (380)
                      +|..+++.+.+++.+..||++.|++.+++.++++++....+++++++.|
T Consensus       349 ~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (399)
T PRK05122        349 LSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRRAPRAVP  397 (399)
T ss_pred             HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcccccccCC
Confidence            9999999999999998999999998888777777666555554444433

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.47  E-value=5.8e-12  Score=124.50  Aligned_cols=173  Identities=12%  Similarity=0.042  Sum_probs=140.1

Q ss_pred             hHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 016902           68 WIAA-LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFAD-SSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI  145 (380)
Q Consensus        68 ~~~~-~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~-a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l  145 (380)
                      |+.. .++++..|+-.+-.  ..+.+..|+.+++|++..+ .+.+.+.|..++.++.+++|+++||+ |-|+++.++.+.
T Consensus        25 W~~~~~~lC~fGF~~e~R~--n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl-G~K~vL~l~~l~  101 (511)
T TIGR00806        25 WRVLVLYLCFYGFMAQFRP--GESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL-RYKPVLVLQALS  101 (511)
T ss_pred             hhHHHHHHHHHHHHHHhhc--hHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHH
Confidence            4433 33444444433332  3345677999999999999 99999999999999999999999998 999999999999


Q ss_pred             HHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhh
Q 016902          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (380)
Q Consensus       146 ~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~  225 (380)
                      ..+..+++.++                            .+...+.+.|++.|++.|+.. +...+++..||+++     
T Consensus       102 Wsl~t~L~~fa----------------------------~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE-----  147 (511)
T TIGR00806       102 FVCVWLLLLLG----------------------------TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR-----  147 (511)
T ss_pred             HHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH-----
Confidence            99888888875                            357789999999999999988 99999999999777     


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHH---HHHHHHHHHHHHHHHhh
Q 016902          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAF---GALAIAMGISNMLFFIG  279 (380)
Q Consensus       226 ~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f---~i~~~~~~~~~i~~~~~  279 (380)
                       |+++.+++..+..+|.++++.+++++ ..+||++-+   +|..+...+++++-++.
T Consensus       148 -R~ratsi~~sg~~vG~~Ia~~L~qll-~s~gWr~y~~Ln~Isl~s~~~a~~~a~~L  202 (511)
T TIGR00806       148 -YQRAAAYSRAAVLLGVFLSSVLGQLL-VTLGWISYSTLNIISLVFMTFSVFLALFL  202 (511)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCchhHHHHHHHHHHHHHHHHHHHHhC
Confidence             99999999999999999999999994 467888654   45555555665554443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.47  E-value=4.1e-12  Score=141.30  Aligned_cols=154  Identities=15%  Similarity=0.111  Sum_probs=121.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 016902           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFA--DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL  147 (380)
Q Consensus        70 ~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~--~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~  147 (380)
                      .....++..++..+...++...+..++...++.+..  ..+++.+++.++..++.+++|+++||+ |||++++++.++.+
T Consensus        10 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-grk~~l~~~~~~~~   88 (1146)
T PRK08633         10 GFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-SKNRVIRIVKLFEV   88 (1146)
T ss_pred             hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-cHHHHHHHHHHHHH
Confidence            344444555555555544545556666666776543  357888899999999999999999998 99999999988777


Q ss_pred             HHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhh
Q 016902          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (380)
Q Consensus       148 lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r  227 (380)
                      ++.+++.+....                         .+...+++++++.|++.+...+...++++|.+++++      |
T Consensus        89 ~~~~~~~~~~~~-------------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r  137 (1146)
T PRK08633         89 GLTLLIVLAYYL-------------------------GWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------L  137 (1146)
T ss_pred             HHHHHHHHHHHH-------------------------ccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------c
Confidence            666655543210                         246778899999999999999999999999999877      9


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 016902          228 DRFFNFFYLSVTVGAIVAFTLVVYIQME  255 (380)
Q Consensus       228 ~~~~~~~~~~~~iG~~i~~~i~~~i~~~  255 (380)
                      +.+++++..+..+|.++|+.+++++.+.
T Consensus       138 ~~~~~~~~~~~~ig~~lg~~l~~~l~~~  165 (1146)
T PRK08633        138 SRANGLLEAFTIVAILAGTALFSFLFES  165 (1146)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999998765

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.47  E-value=6.3e-12  Score=119.85  Aligned_cols=171  Identities=20%  Similarity=0.239  Sum_probs=144.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhH-HHHHHHHHHHHHH
Q 016902           72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYW-TIAIFTTIYLAGL  150 (380)
Q Consensus        72 ~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~-~i~i~~~l~~lg~  150 (380)
                      +...+..++..........+++.|+.+.+|.+..+.+........+..++.++.|+++||+ |||+ .+.++.++..++.
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~  256 (352)
T cd06174         178 LLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-GRRRLLLLIGLLLAALGL  256 (352)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHH
Confidence            3344445555566666777788888887899999999999999999999999999999998 9999 9999988888887


Q ss_pred             HHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhH
Q 016902          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (380)
Q Consensus       151 ~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~  230 (380)
                      +.+...                            .+...+++..++.+++.+...+....+..|.+|+++      |++.
T Consensus       257 ~~~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~  302 (352)
T cd06174         257 LLLALA----------------------------PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEA------RGTA  302 (352)
T ss_pred             HHHHHh----------------------------ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHH------HHHH
Confidence            776653                            235567778889999999999999999999999876      9999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHH
Q 016902          231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF  277 (380)
Q Consensus       231 ~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~  277 (380)
                      +++++...++|..+++.+.+++.+..+|++.|.+.+++.+++.++.+
T Consensus       303 ~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~  349 (352)
T cd06174         303 SGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL  349 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence            99999999999999999999999889999999988888777766543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.46  E-value=4e-12  Score=122.73  Aligned_cols=168  Identities=15%  Similarity=0.081  Sum_probs=129.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 016902           72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT  151 (380)
Q Consensus        72 ~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~  151 (380)
                      +.+....++..+....+....+.|. +++|.+....+.....+.++..++.+++|+++||+ |||+.+.++.++..++.+
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~  285 (377)
T TIGR00890       208 WVLYLSFFLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI-GRQKTMSIVFGISAVGMA  285 (377)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHHHH
Confidence            3333344444444444555556665 56899988888888999999999999999999998 999999998888888776


Q ss_pred             HHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHH
Q 016902          152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF  231 (380)
Q Consensus       152 ~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~  231 (380)
                      ++.....                          .....+++..++.+++.+...+..+.+.+|.+|+++      |++.+
T Consensus       286 ~~~~~~~--------------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~------~~~~~  333 (377)
T TIGR00890       286 AMLFIPM--------------------------LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPAN------SAANY  333 (377)
T ss_pred             HHHHccc--------------------------chhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhh------hhhHh
Confidence            6554310                          112234445566778878777788889999999877      99999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHH
Q 016902          232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISN  273 (380)
Q Consensus       232 ~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~  273 (380)
                      ++++....+|..+++.+.+++.+..||++.|.+.+++.++++
T Consensus       334 g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       334 GFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL  375 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence            999999999999999999999999999999988777766554

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.45  E-value=7.1e-12  Score=123.42  Aligned_cols=178  Identities=10%  Similarity=-0.108  Sum_probs=128.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 016902           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (380)
Q Consensus        70 ~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg  149 (380)
                      ..|......++...++..+...++.|+++++|++..+.+.+.+.+.++..++.+++|+++||+ |||+.++++..+..++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~   81 (396)
T TIGR00882         3 NFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL-GLKKHLLWIISGLLVL   81 (396)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence            356666777777777777888999999999999999999999999999999999999999998 9999998877766555


Q ss_pred             HHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhh
Q 016902          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (380)
Q Consensus       150 ~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~  229 (380)
                      ...+......+.+.                    ......+++++++.+++.+...+....+..|.-+  +      ++.
T Consensus        82 ~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~------~~~  133 (396)
T TIGR00882        82 FAPFFIYVFGPLLQ--------------------SNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--N------SNF  133 (396)
T ss_pred             HHHHHHHHhhhHHH--------------------HHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--h------ccc
Confidence            44332211000000                    0112334555677778877777777666655322  1      334


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHH
Q 016902          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF  277 (380)
Q Consensus       230 ~~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~  277 (380)
                      .++......++|..+++.+++.+.+ .+|++.|++.+++.++..++.+
T Consensus       134 ~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~  180 (396)
T TIGR00882       134 EYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLM  180 (396)
T ss_pred             ccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHH
Confidence            5566667778999999999888765 5999999887776665554433

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.45  E-value=3.3e-12  Score=130.47  Aligned_cols=151  Identities=15%  Similarity=0.136  Sum_probs=119.6

Q ss_pred             HhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcc
Q 016902           90 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC  169 (380)
Q Consensus        90 ~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~~~c  169 (380)
                      .+...|+.+++|-+ ....++.+.+.+...+..++.|.|||.| |||+.++++.++.++|.++.+-+             
T Consensus        64 a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlf-GRr~~~i~g~~l~vvG~Iv~atA-------------  128 (599)
T PF06609_consen   64 ASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLF-GRRYFFIIGSLLGVVGSIVCATA-------------  128 (599)
T ss_pred             HHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHh-cchHHHHHHHHHHHhHHHHhhcC-------------
Confidence            45567888899876 4556777888899999999999999997 99999999999999999988754             


Q ss_pred             cccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 016902          170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV  249 (380)
Q Consensus       170 ~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~  249 (380)
                                     .+...++.+..+.|+|.|... +....++|..|.+.      |..+..+..+...+...+++.+.
T Consensus       129 ---------------~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~------R~~~~~~~~~~~i~~~~~~~~ia  186 (599)
T PF06609_consen  129 ---------------QNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKW------RGLGLAIASIPFIITTWISPLIA  186 (599)
T ss_pred             ---------------CcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccch------hhhHhHHHHHHHHhhhcccHHHH
Confidence                           467889999999999976554 55667899999877      77766665555555555677777


Q ss_pred             HHhhhcchhhHHHHHHHHHHHHHHHHHH
Q 016902          250 VYIQMEHGWGSAFGALAIAMGISNMLFF  277 (380)
Q Consensus       250 ~~i~~~~gw~~~f~i~~~~~~~~~i~~~  277 (380)
                      ..+..+.+|||.|++.++...++++..+
T Consensus       187 ~~~~~~~~WRw~~~~~~i~~~i~~vl~~  214 (599)
T PF06609_consen  187 QLFAAHSGWRWIFYIFIIWSGIALVLIF  214 (599)
T ss_pred             HHhccCCCcchHHHHHHHHHHHHHHHHH
Confidence            6666667899999998887777665433

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.44  E-value=8.3e-12  Score=125.33  Aligned_cols=178  Identities=17%  Similarity=0.139  Sum_probs=122.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chhHHH-HHHHHHH
Q 016902           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL-GRYWTI-AIFTTIY  146 (380)
Q Consensus        69 ~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~-GR~~~i-~i~~~l~  146 (380)
                      +.++...+..++.....+++..++|.|+++.+|++..+++.....+.++..++.+++|+++||+. ||++.. .+...+.
T Consensus       253 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~  332 (452)
T PRK11273        253 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV  332 (452)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHH
Confidence            34566666666666777888889999999999999888888888888888889999999999972 334332 2222233


Q ss_pred             HHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhh
Q 016902          147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (380)
Q Consensus       147 ~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~  226 (380)
                      .++.+++.+.       +.                   .+....++++++.|.+..+.......+..|.+|++.      
T Consensus       333 ~~~~~~~~~~-------~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------  380 (452)
T PRK11273        333 TIATIVYWLN-------PA-------------------GNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKA------  380 (452)
T ss_pred             HHHHHHHHHh-------cc-------------------cChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhh------
Confidence            3333322221       00                   122233344444554433333344456779999877      


Q ss_pred             hhhHHHHHHHHHHHHHHH-HHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHh
Q 016902          227 LDRFFNFFYLSVTVGAIV-AFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (380)
Q Consensus       227 r~~~~~~~~~~~~iG~~i-~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~~  278 (380)
                      |++.+++++...++|+.+ +|.+.+++.+..||++.|++.+++.+++++....
T Consensus       381 ~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~  433 (452)
T PRK11273        381 AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV  433 (452)
T ss_pred             hhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence            999999998888888654 7999999999999999999887777666555443

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.44  E-value=1.7e-11  Score=118.92  Aligned_cols=157  Identities=10%  Similarity=0.060  Sum_probs=120.9

Q ss_pred             HHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCC
Q 016902           85 YFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMP  164 (380)
Q Consensus        85 ~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~  164 (380)
                      ......+++.|+++++|.+..+.+.......+....+.+++|+++||+ |||+++.++.++..++.+.+...        
T Consensus       215 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~--------  285 (375)
T TIGR00899       215 NILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-GKRRLMLLAALAGVAFYTGLAAD--------  285 (375)
T ss_pred             HHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchhHHHHHHHHHHHHHHHHHHH--------
Confidence            334455678899899999998888877777677777788999999998 99999888776655544433322        


Q ss_pred             CCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHH
Q 016902          165 NQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIV  244 (380)
Q Consensus       165 ~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i  244 (380)
                                          .+...+++...+.+++.|...+....+..|.+|+ +      +++.+++++...++|..+
T Consensus       286 --------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~g~~~  338 (375)
T TIGR00899       286 --------------------NSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-R------AGAATTLYTNTGRVGWII  338 (375)
T ss_pred             --------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-h------hhHHHHHHHHHHHHHHHH
Confidence                                2344455566677888777777777888888864 2      568899999999999999


Q ss_pred             HHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHH
Q 016902          245 AFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF  277 (380)
Q Consensus       245 ~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~  277 (380)
                      ++.+.+++.+..||+..|++.+++.+++.++..
T Consensus       339 g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~  371 (375)
T TIGR00899       339 AGSVGGILAERWSYHAVYWFAIVMLIVALFCLL  371 (375)
T ss_pred             HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence            999999999988999999988887777666543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.43  E-value=2.7e-12  Score=124.62  Aligned_cols=169  Identities=14%  Similarity=0.052  Sum_probs=127.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 016902           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (380)
Q Consensus        70 ~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg  149 (380)
                      ..+......++....++.+..+++.|+++++|.+..+.+.......++..++.+++|+++||+ |||+.+.++..+..+.
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~  298 (394)
T TIGR00883       220 PFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRI-GRRPVLIIFTVLAALL  298 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHH
Confidence            455566666777777777888899999889999999998888888899999999999999998 9999887665544333


Q ss_pred             H-HHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhh
Q 016902          150 L-TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD  228 (380)
Q Consensus       150 ~-~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~  228 (380)
                      . ..+....      .+                   .+...+++..++.+++.+...++..++.+|.+|++.      |+
T Consensus       299 ~~~~~~~~~------~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~~  347 (394)
T TIGR00883       299 AVPLLMALL------DS-------------------GSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEV------RY  347 (394)
T ss_pred             HHHHHHHHh------cC-------------------CchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccc------ee
Confidence            2 2221110      00                   133445566677788888888899999999999877      88


Q ss_pred             hHHHH-HHHHHHHHHHHHHHHHHHhhhcch-hhHHHHHHHHHHH
Q 016902          229 RFFNF-FYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMG  270 (380)
Q Consensus       229 ~~~~~-~~~~~~iG~~i~~~i~~~i~~~~g-w~~~f~i~~~~~~  270 (380)
                      +++++ +.++..+|+.++|.+.+++.+..| |++.++..+++.+
T Consensus       348 ~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l  391 (394)
T TIGR00883       348 TGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL  391 (394)
T ss_pred             eEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence            88887 566677899999999999998888 8776665554443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00896 CynX cyanate transporter

Probab=99.43  E-value=4e-12  Score=123.19  Aligned_cols=146  Identities=16%  Similarity=0.135  Sum_probs=120.1

Q ss_pred             HhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcc
Q 016902           90 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC  169 (380)
Q Consensus        90 ~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~~~c  169 (380)
                      ..+.+.+.+++|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.+.. ..             
T Consensus        20 ~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~-~~-------------   84 (355)
T TIGR00896        20 GPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF-GEERSVAAGLLLIAAGILIR-SA-------------   84 (355)
T ss_pred             cccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CchHHHHHHHHHHHHHHHHH-Hh-------------
Confidence            3455678889999999999999999999999999999999998 99999999988877776654 22             


Q ss_pred             cccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 016902          170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV  249 (380)
Q Consensus       170 ~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~  249 (380)
                                     .+...+++++++.|+|.+...+.......|.++ ++      |+..+++++.+.++|..+++.+.
T Consensus        85 ---------------~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~i~~~~~  142 (355)
T TIGR00896        85 ---------------PGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QR------VGLMTGLYSMALMGGAALAAAAT  142 (355)
T ss_pred             ---------------ccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-ch------hhHHHHHHHHHHHHHHHHHHHHH
Confidence                           245667888999999998888888888888876 34      89999999999999999999998


Q ss_pred             HHhhhcc--hhhHHHHHHHHHHHHH
Q 016902          250 VYIQMEH--GWGSAFGALAIAMGIS  272 (380)
Q Consensus       250 ~~i~~~~--gw~~~f~i~~~~~~~~  272 (380)
                      +++.+..  +|++.|.+.+++.++.
T Consensus       143 ~~l~~~~~~~w~~~f~~~~~~~~~~  167 (355)
T TIGR00896       143 VPLAQHSGGHWQQALAWWALPALLA  167 (355)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHH
Confidence            8887654  3998887665544433

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.42  E-value=4.4e-12  Score=129.57  Aligned_cols=141  Identities=15%  Similarity=0.135  Sum_probs=126.0

Q ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCccccccccc
Q 016902           97 FYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL  176 (380)
Q Consensus        97 ~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~  176 (380)
                      .+.++.+.....+..+++.++..+|++++|++||++ |||++++++.++.+++.++.+++                    
T Consensus       110 ~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~-GRk~~~~~~~~~~~i~~~~~a~a--------------------  168 (521)
T KOG0255|consen  110 WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRF-GRKPVLLVSLLLFIIFGILTAFA--------------------  168 (521)
T ss_pred             hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhc-ccHHHHHHHHHHHHHHHHHHHHh--------------------
Confidence            356777888899999999999999999999999995 99999999999999999887775                    


Q ss_pred             CCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 016902          177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH  256 (380)
Q Consensus       177 ~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~  256 (380)
                              .+...+++.|++.|++.++...+...+++|.++++.      |+.+.++ ......++.+++.+++|+..  
T Consensus       169 --------~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--  231 (521)
T KOG0255|consen  169 --------PNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR--  231 (521)
T ss_pred             --------CcHHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--
Confidence                    578899999999999999999999999999999888      9999998 77888888899999999877  


Q ss_pred             hhhHHHHHHHHHHHHHHHH
Q 016902          257 GWGSAFGALAIAMGISNML  275 (380)
Q Consensus       257 gw~~~f~i~~~~~~~~~i~  275 (380)
                      +|||.+++..+..++.++.
T Consensus       232 ~Wr~~~~~~~~~~~~~~~~  250 (521)
T KOG0255|consen  232 DWRWLFWIISIPSGLFLLL  250 (521)
T ss_pred             hHHHHHHHHHHHHHHHHHH
Confidence            8999999888777666555

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.42  E-value=2.9e-11  Score=119.17  Aligned_cols=167  Identities=10%  Similarity=-0.009  Sum_probs=125.2

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 016902           74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI  153 (380)
Q Consensus        74 i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l  153 (380)
                      +....++....++.+..+++.|+.+ .|++....+.+...+.++..++.++.|+++||+ ||++.+.++.+...++.+++
T Consensus       225 ~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~  302 (406)
T PRK11551        225 LWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL-RPRRVVLLIYAGILASLAAL  302 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHH
Confidence            3333444455666677778888764 799999999999999999999999999999998 99999887666555554444


Q ss_pred             HhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHH
Q 016902          154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF  233 (380)
Q Consensus       154 ~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~  233 (380)
                      ...                            .+...+++..++.+++.++..+...++..|.+|++.      |++.+++
T Consensus       303 ~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~  348 (406)
T PRK11551        303 AAA----------------------------PSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQV------RGTGVGA  348 (406)
T ss_pred             Hhc----------------------------CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhh------hhhhhhH
Confidence            332                            123344555567777777788888999999999887      9999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcch-hhHHHHHHHHHHHHHHHHH
Q 016902          234 FYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLF  276 (380)
Q Consensus       234 ~~~~~~iG~~i~~~i~~~i~~~~g-w~~~f~i~~~~~~~~~i~~  276 (380)
                      ++....+|..++|.+.+++.+..+ |...+++...+.+++.+..
T Consensus       349 ~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~  392 (406)
T PRK11551        349 AVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAA  392 (406)
T ss_pred             HHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999987654 5666666555555444443

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.41  E-value=4.5e-11  Score=121.45  Aligned_cols=177  Identities=14%  Similarity=0.110  Sum_probs=130.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cchhHH-HHHH
Q 016902           68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY----LGRYWT-IAIF  142 (380)
Q Consensus        68 ~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~----~GR~~~-i~i~  142 (380)
                      ||+.+.++...+...+..+.....++.|++ +.|.+..+.+....+.  ..+++.+++|+++||+    +|||+. ++++
T Consensus        11 ~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~-~~g~~~~~ig~~~~~~--~~~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~   87 (491)
T PRK11010         11 QPNSAILLILGFASGLPLALTSGTLQAWMT-VENIDLKTIGFFSLVG--QAYVFKFLWSPLMDRYTPPFLGRRRGWLLAT   87 (491)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHcccccCCCCchHHHHHH
Confidence            334566666666666777666666777765 5689888877752222  2236789999999995    399886 5566


Q ss_pred             HHHHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCch
Q 016902          143 TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD  222 (380)
Q Consensus       143 ~~l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~  222 (380)
                      .++..++.+.+++..      |.                   .+...+.+.+++.+++.+...+...++.+|.+|+++  
T Consensus        88 ~i~~~~~~~~~a~~~------~~-------------------~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~--  140 (491)
T PRK11010         88 QLLLLVAIAAMGFLE------PG-------------------TQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE--  140 (491)
T ss_pred             HHHHHHHHHHHHHcC------Cc-------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh--
Confidence            666656665555421      11                   356677778888899989889999999999999777  


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh-cchhhHHHHHHHHHHHHHHHHHHh
Q 016902          223 YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-EHGWGSAFGALAIAMGISNMLFFI  278 (380)
Q Consensus       223 ~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~-~~gw~~~f~i~~~~~~~~~i~~~~  278 (380)
                          |+++.++...+..+|..+++.+..++.+ ..||+..|++.+++.++..+..+.
T Consensus       141 ----rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~  193 (491)
T PRK11010        141 ----RGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLL  193 (491)
T ss_pred             ----hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHh
Confidence                9999999999999999999999999888 569999999888776665544333

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.41  E-value=1.3e-11  Score=126.11  Aligned_cols=134  Identities=19%  Similarity=0.258  Sum_probs=116.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcch
Q 016902          106 DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSW  185 (380)
Q Consensus       106 ~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~  185 (380)
                      +.+++.+.+.+++.++.++.|+++|++ |||++++++.+++.+|.++++.+                            .
T Consensus        90 ~~s~~~s~~~lga~~g~l~~g~l~d~~-GRk~~l~~~~~~~~iG~ii~~~a----------------------------~  140 (513)
T KOG0254|consen   90 RQGLLTSILNLGALVGSLLAGRLGDRI-GRKKTLLLAVVLFLIGAIIIALA----------------------------P  140 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHh----------------------------h
Confidence            347999999999999999999999998 99999999999999999999986                            4


Q ss_pred             hHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhc--chhhHHHH
Q 016902          186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME--HGWGSAFG  263 (380)
Q Consensus       186 ~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~--~gw~~~f~  263 (380)
                      +...++++|++.|+|.|+....++.+++|..|.+.      |+...+.+++..++|.+++. +.++..++  .+||..++
T Consensus       141 ~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~------RG~l~~~~~l~~~~Gi~~~~-~~~~~~~~~~~~Wr~~~~  213 (513)
T KOG0254|consen  141 SWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHI------RGTLVSLYQLFITIGILLGY-CINYGTSKVYAGWRIPLG  213 (513)
T ss_pred             hHHHHHHHHHHhccchhhhhhcchhhHhhcCChhh------hHHHHHHHHHHHHHHHHHHH-HHhhhhccCCccHHHHHH
Confidence            68899999999999999999999999999999888      99999999999999999994 44444444  48998888


Q ss_pred             HHHHHHHHHHHH
Q 016902          264 ALAIAMGISNML  275 (380)
Q Consensus       264 i~~~~~~~~~i~  275 (380)
                      +..+..++..+.
T Consensus       214 ~~~i~~~~~~~~  225 (513)
T KOG0254|consen  214 LALIPAVILALG  225 (513)
T ss_pred             HHHHHHHHHHHH
Confidence            766665555554

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.41  E-value=2.2e-11  Score=135.56  Aligned_cols=146  Identities=14%  Similarity=0.028  Sum_probs=108.7

Q ss_pred             HHhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccccccc
Q 016902           97 FYVMHKSF-ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQL  175 (380)
Q Consensus        97 ~~~~~~s~-~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~  175 (380)
                      +...+.+. ...++..+.+.+...++.+++|+++||| |||+++.+...+.++..++..+....                
T Consensus        43 ~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~-~rk~~~~~~~~~~~~~~~~~~~~~~~----------------  105 (1140)
T PRK06814         43 SGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKY-DKAKLAKILKFAEIGIAALAIYGFHL----------------  105 (1140)
T ss_pred             ccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhc-cHHHHHHHHHHHHHHHHHHHHHHHHH----------------
Confidence            33334433 3456777788899999999999999998 99998644222222111111111000                


Q ss_pred             cCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 016902          176 LGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME  255 (380)
Q Consensus       176 ~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~  255 (380)
                               .+...+++++++.|++.+...+...+++.|.++++.      ++.+.++...+.++|.++||.+++++...
T Consensus       106 ---------~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~l~~~  170 (1140)
T PRK06814        106 ---------NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGLATIS  170 (1140)
T ss_pred             ---------hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                     357788999999999999999999999999999877      99999999999999999999999999988


Q ss_pred             chhhHHHHHHHHHHHHHHH
Q 016902          256 HGWGSAFGALAIAMGISNM  274 (380)
Q Consensus       256 ~gw~~~f~i~~~~~~~~~i  274 (380)
                      .+|++.|++.+++.+++++
T Consensus       171 ~~~~~~~~~~~~~~~~~~~  189 (1140)
T PRK06814        171 GNFVILVALLMGIAVLGWL  189 (1140)
T ss_pred             cccHHHHHHHHHHHHHHHH
Confidence            8999998544444443333

>TIGR00901 2A0125 AmpG-related permease

Probab=99.41  E-value=2.8e-11  Score=117.26  Aligned_cols=158  Identities=13%  Similarity=0.126  Sum_probs=115.8

Q ss_pred             HHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cchhHHH-HHHHHHHHHHHHHHHhhhhcccC
Q 016902           88 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY----LGRYWTI-AIFTTIYLAGLTGITLCATMKVF  162 (380)
Q Consensus        88 i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~----~GR~~~i-~i~~~l~~lg~~~l~l~~~~~~l  162 (380)
                      +.....+.+.+++|++.++.+..... .....+ .+++|+++||+    +||||.+ +++.++..+.+..+.+..     
T Consensus         6 ~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~-----   78 (356)
T TIGR00901         6 LVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLV-----   78 (356)
T ss_pred             hHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCC-----
Confidence            34445555667899999998888654 333333 78999999997    5999975 455555555554544321     


Q ss_pred             CCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHH
Q 016902          163 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA  242 (380)
Q Consensus       163 ~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~  242 (380)
                       +.                   .+...+++..++.+++.+...+...++.+|.+|+++      |+.+.++...+.++|.
T Consensus        79 -~~-------------------~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~~~~G~  132 (356)
T TIGR00901        79 -PS-------------------TDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYGSTIYIVGYRAGM  132 (356)
T ss_pred             -cc-------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchHHHHHHHHHHHHH
Confidence             00                   244445555556777778888899999999998777      9999999999999999


Q ss_pred             HHHHHHHHHhhhcch--------hhHHHHHHHHHHHHHHHHHHh
Q 016902          243 IVAFTLVVYIQMEHG--------WGSAFGALAIAMGISNMLFFI  278 (380)
Q Consensus       243 ~i~~~i~~~i~~~~g--------w~~~f~i~~~~~~~~~i~~~~  278 (380)
                      ++++.+++++....|        |+..|++.+++.++++++.++
T Consensus       133 ~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~  176 (356)
T TIGR00901       133 LLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLF  176 (356)
T ss_pred             HHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence            999999998888777        999999888877665554443

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.40  E-value=4.1e-12  Score=122.47  Aligned_cols=171  Identities=13%  Similarity=0.114  Sum_probs=147.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHh---HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 016902           72 LFIFGNEMAERMAYFGLSVN---MVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA  148 (380)
Q Consensus        72 ~~i~~~~~~~~~~~~~i~~~---l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~l  148 (380)
                      +.++...++...++|-+.-|   ..+++.++.++|.++.+.+.+.+.+++.++-.+.|.++||. +.|..+-+++++..+
T Consensus        28 ~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~-npr~fm~~gLilsai  106 (448)
T COG2271          28 IQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS-NPRYFMAFGLILSAI  106 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC-CCceeehHHHHHHHH
Confidence            45556666677777765443   45788999999999999999999999999999999999998 999999999999988


Q ss_pred             HHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhh
Q 016902          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD  228 (380)
Q Consensus       149 g~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~  228 (380)
                      ..+++.++                            .+...+.+..++.|+..|.-.|++...++..|+.++      ||
T Consensus       107 ~nil~Gfs----------------------------~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e------RG  152 (448)
T COG2271         107 VNILFGFS----------------------------PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE------RG  152 (448)
T ss_pred             HHHHHhhh----------------------------hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc------cC
Confidence            88888875                            356777778889999999999999999999999888      99


Q ss_pred             hHHHHHHHHHHHHHHHHHHHH--HHhhhcchhhHHHHHHHHHHHHHHHHHH
Q 016902          229 RFFNFFYLSVTVGAIVAFTLV--VYIQMEHGWGSAFGALAIAMGISNMLFF  277 (380)
Q Consensus       229 ~~~~~~~~~~~iG~~i~~~i~--~~i~~~~gw~~~f~i~~~~~~~~~i~~~  277 (380)
                      +..++|+.+-|+|+.+.+.+.  +++..+.+|+.+|++++++.++..++.+
T Consensus       153 ~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~  203 (448)
T COG2271         153 TWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILL  203 (448)
T ss_pred             ceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998  8898888999999999887655444433

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.40  E-value=2.8e-11  Score=119.08  Aligned_cols=163  Identities=12%  Similarity=0.045  Sum_probs=122.6

Q ss_pred             HHHHHHHHHhHHHHHHHhcCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhh
Q 016902           82 RMAYFGLSVNMVTFMFYVMHKSFA---DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCAT  158 (380)
Q Consensus        82 ~~~~~~i~~~l~~yl~~~~~~s~~---~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~  158 (380)
                      .+....+...++.|+.+..+....   ..+.+..++.++..++.++.|+++||+ ||++.+.++.++..++.+++...  
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~--  308 (408)
T PRK09874        232 QVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI-GPEKILITALIFSVLLLIPMSFV--  308 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHHHHh--
Confidence            334444556677777765443322   233444555666777888899999998 99999998887777666554432  


Q ss_pred             cccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHH
Q 016902          159 MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSV  238 (380)
Q Consensus       159 ~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~  238 (380)
                                                .+...+++.+++.|++.+...+....+..+..+++.      +++.+++++...
T Consensus       309 --------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~  356 (408)
T PRK09874        309 --------------------------QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQI------AGRIFSYNQSFR  356 (408)
T ss_pred             --------------------------ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCccc------ceeeehHHHHHH
Confidence                                      234456677788899999888888888888888776      899999999999


Q ss_pred             HHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHhh
Q 016902          239 TVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG  279 (380)
Q Consensus       239 ~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~~~  279 (380)
                      .+|..++|.+++++.+..||++.|++.+++.+++.+..+..
T Consensus       357 ~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~  397 (408)
T PRK09874        357 DIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNS  397 (408)
T ss_pred             HHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998888877776655443

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.40  E-value=3.2e-11  Score=120.51  Aligned_cols=179  Identities=15%  Similarity=0.080  Sum_probs=121.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch--hHHHHHHHHHHH
Q 016902           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGR--YWTIAIFTTIYL  147 (380)
Q Consensus        70 ~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR--~~~i~i~~~l~~  147 (380)
                      .++.+.+..++..+.++++.++++.|+.+++|++..+++...+.+.++..++.+++|+++||+.+|  +.......+...
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~  323 (434)
T PRK11663        244 YIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGIL  323 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHH
Confidence            345555555555666667788899999888999999999999999999999999999999997322  232222222222


Q ss_pred             HHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhh
Q 016902          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (380)
Q Consensus       148 lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r  227 (380)
                      +..+.+.+.   +    .                   .+....++..+++|++..+.........+|.++++.      |
T Consensus       324 ~~~~~~~~~---~----~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~  371 (434)
T PRK11663        324 LSVGSLWLM---P----F-------------------ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEA------A  371 (434)
T ss_pred             HHHHHHHHc---c----c-------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhh------H
Confidence            222111111   0    0                   112222233333444433333344556688888766      9


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHhhc
Q 016902          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT  280 (380)
Q Consensus       228 ~~~~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~~~~  280 (380)
                      ++..++.+...++|..++|.+.+++.+..||...|++.+++.+++.++.+...
T Consensus       372 g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~  424 (434)
T PRK11663        372 GAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFL  424 (434)
T ss_pred             HhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999888887776665544433

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.40  E-value=1.9e-11  Score=123.72  Aligned_cols=150  Identities=16%  Similarity=0.122  Sum_probs=113.7

Q ss_pred             HHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCC
Q 016902           87 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQ  166 (380)
Q Consensus        87 ~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~  166 (380)
                      ++..+++.|++.++|++..+++.+.+.+.++..++.+++|+++||+ |||++++++.++..++.+++....       + 
T Consensus       293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~-------~-  363 (496)
T PRK03893        293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWL-GTRKAYVCSLLISQLLIIPVFAIG-------G-  363 (496)
T ss_pred             hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhhcc-------c-
Confidence            4567789999889999999999999999999999999999999997 999998887766555544332210       0 


Q ss_pred             CcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHH
Q 016902          167 DNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF  246 (380)
Q Consensus       167 ~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~  246 (380)
                                        .+...+.+..++.++...+..+..+++..|.+|++.      |++.+++++....+|+.++|
T Consensus       364 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~lgp  419 (496)
T PRK03893        364 ------------------ANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQ------RAAGLGFTYNVGALGGALAP  419 (496)
T ss_pred             ------------------cHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHH------hhcccchhhhhhhHHHHHHH
Confidence                              122333333333333333445677788899999776      99999999999999999999


Q ss_pred             HHHHHhhhcchhhHHHHHHHHHH
Q 016902          247 TLVVYIQMEHGWGSAFGALAIAM  269 (380)
Q Consensus       247 ~i~~~i~~~~gw~~~f~i~~~~~  269 (380)
                      .+.+++.+..||+..+.+.+++.
T Consensus       420 ~l~g~l~~~~g~~~~~~~~~~~~  442 (496)
T PRK03893        420 ILGALIAQRLDLGTALASLSFSL  442 (496)
T ss_pred             HHHHHHhccCChHHHHHHHHHHH
Confidence            99999999999988776554443

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.40  E-value=1.7e-11  Score=118.29  Aligned_cols=194  Identities=13%  Similarity=0.086  Sum_probs=152.0

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 016902           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (380)
Q Consensus        65 ~~~~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~  144 (380)
                      +..+|+++...+.... .+..+.+.+.+..++.+++|+|..+.++++.+..+...+.-++-|++.||+ |-|++..++.+
T Consensus        10 ~~~~~~L~~S~~af~v-~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drf-GgR~~~~~s~~   87 (417)
T COG2223          10 RIARRNLWLSTLAFDV-GFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRF-GGRKWTILSML   87 (417)
T ss_pred             cchhHHHHHHHHHHHH-HHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhccc-CchHHHHHHHH
Confidence            4455666655544444 444455667788899999999999999999999999999999999999998 99999999988


Q ss_pred             HHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhh
Q 016902          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (380)
Q Consensus       145 l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~  224 (380)
                      +.++-.+.++++...                         .+.+.+++..++.|++ |+..+...++.+..||+++    
T Consensus        88 l~~IP~~~~~~a~~~-------------------------~~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~----  137 (417)
T COG2223          88 LLLIPCLGLAFAVTY-------------------------PSTWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEK----  137 (417)
T ss_pred             HHHHHHHHHHHHccC-------------------------CchHHHHHHHHHHhcc-cceehcccccccccCChhh----
Confidence            888888887776321                         2335677777788888 4556777888999999888    


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcch---hhHHHHHHHHHHHHHHHHHHhhcccccccCCCCCcc
Q 016902          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG---WGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPL  293 (380)
Q Consensus       225 ~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g---w~~~f~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  293 (380)
                        ++.+.+++- ..|+|..+...++.++....|   |+....+..+.++++.+.+++..+.-...++..++.
T Consensus       138 --qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~  206 (417)
T COG2223         138 --QGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQ  206 (417)
T ss_pred             --hhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhcccccc
Confidence              999999998 899999999999998888888   999988888888888887777665443333333333

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.39  E-value=7.7e-11  Score=116.41  Aligned_cols=167  Identities=15%  Similarity=0.122  Sum_probs=124.6

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cchhH-HHHHHHHHHHHH
Q 016902           75 FGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY----LGRYW-TIAIFTTIYLAG  149 (380)
Q Consensus        75 ~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~----~GR~~-~i~i~~~l~~lg  149 (380)
                      +...+.+.+.+.-....++.|+++ .|++..+.+.+..+...  .+..+++|+++||+    +|||| .++++.++..++
T Consensus         5 ~~l~~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~   81 (402)
T PRK11902          5 LLLGFASGLPLALTSGTLQAWMTV-EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAAS   81 (402)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHH
Confidence            344555555555566678888875 59999999988655554  57889999999997    27776 677777777666


Q ss_pred             HHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhh
Q 016902          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (380)
Q Consensus       150 ~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~  229 (380)
                      +..+.+..      +.                   .+...+++..++.+++.+...+...++.+|.+|+++      |++
T Consensus        82 ~~~l~~~~------~~-------------------~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r~~  130 (402)
T PRK11902         82 IAAMAFCP------PH-------------------AALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------RGA  130 (402)
T ss_pred             HHHHHhcC------cc-------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hhH
Confidence            66655420      00                   245555555566777778888999999999999877      999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhc-chhhHHHHHHHHHHHHHHHH
Q 016902          230 FFNFFYLSVTVGAIVAFTLVVYIQME-HGWGSAFGALAIAMGISNML  275 (380)
Q Consensus       230 ~~~~~~~~~~iG~~i~~~i~~~i~~~-~gw~~~f~i~~~~~~~~~i~  275 (380)
                      +.++...+..+|..+++.++.++.+. .||+..|++.++..++..+.
T Consensus       131 ~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~  177 (402)
T PRK11902        131 GAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALT  177 (402)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence            99998888999999999888888775 59999999877766555443

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.38  E-value=6.8e-11  Score=113.51  Aligned_cols=159  Identities=16%  Similarity=0.115  Sum_probs=128.5

Q ss_pred             HHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCCC
Q 016902           88 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD  167 (380)
Q Consensus        88 i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~~  167 (380)
                      ....+.+.+++.|+++..+++++...+.+++.++++..|++.+|+ |+|+.++++..++.+|..++.-++.         
T Consensus        31 l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-gyk~gi~lgL~l~avg~~lF~pAa~---------  100 (422)
T COG0738          31 LNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-GYKAGIVLGLLLYAVGAALFWPAAS---------  100 (422)
T ss_pred             cchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-hhHHHHHHHHHHHHHHHHHHhhhhh---------
Confidence            444578899999999999999999999999999999999999998 9999999999999999988864432         


Q ss_pred             cccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHH
Q 016902          168 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT  247 (380)
Q Consensus       168 ~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~  247 (380)
                                      ......+++++++++.|.+..+....+|+..+.+++.      -..-.|..+....+|+.++|.
T Consensus       101 ----------------~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~------a~~rlnl~q~fn~lGa~~gp~  158 (422)
T COG0738         101 ----------------SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPES------AAFRLNLAQAFNGLGAILGPL  158 (422)
T ss_pred             ----------------hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchh------HHHHHHHHHHhhhhHHHHHHH
Confidence                            1467889999999999999999999999999999765      445566667777888888988


Q ss_pred             HHHHhhhc-------------------chhhHHHHHHHHHHHHHHHHHHh
Q 016902          248 LVVYIQME-------------------HGWGSAFGALAIAMGISNMLFFI  278 (380)
Q Consensus       248 i~~~i~~~-------------------~gw~~~f~i~~~~~~~~~i~~~~  278 (380)
                      +++++..+                   ..|++.|.+.+....+..+.+..
T Consensus       159 ~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~  208 (422)
T COG0738         159 LGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILL  208 (422)
T ss_pred             HHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence            88876551                   13677776655554444443333

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.38  E-value=4.8e-11  Score=115.45  Aligned_cols=180  Identities=12%  Similarity=0.000  Sum_probs=128.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHH-HHHHHHHHH
Q 016902           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWT-IAIFTTIYL  147 (380)
Q Consensus        69 ~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~-i~i~~~l~~  147 (380)
                      +..+...+..++.....+.+..+++.|+.+.+|.+..+++.+.....++..++.+++|+++||+ |||+. +........
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~  293 (399)
T TIGR00893       215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLL-LRRGKSLVFARKTAI  293 (399)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-hhcccchhHHHHHHH
Confidence            3456666677777778888888899999999999999999999999999999999999999998 98862 111111222


Q ss_pred             HHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhh
Q 016902          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (380)
Q Consensus       148 lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r  227 (380)
                      ++.++..+........                     .... ..+...+.+.+..+..+...++.+|.+|++.      |
T Consensus       294 ~~~~~~~~~~~~~~~~---------------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~  345 (399)
T TIGR00893       294 IAGLVLSLLMFATNYV---------------------NIPY-AALALVALGFFGLGAGAIGWALISDNAPGNI------A  345 (399)
T ss_pred             HHHHHHHHHHHHhccc---------------------hhHH-HHHHHHHHHHhchhhhhHHHHHHHhhcChhH------H
Confidence            2211111110000000                     1122 2333333334434478889999999999887      9


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhcch-hhHHHHHHHHHHHHHHHHHH
Q 016902          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFF  277 (380)
Q Consensus       228 ~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g-w~~~f~i~~~~~~~~~i~~~  277 (380)
                      ++.+++++...++|..+++.+.+++.+..| |.+.|++.+++.+++.++.+
T Consensus       346 g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  396 (399)
T TIGR00893       346 GLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL  396 (399)
T ss_pred             HHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999888 99999887777766655543

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.38  E-value=2.2e-11  Score=119.08  Aligned_cols=165  Identities=13%  Similarity=0.058  Sum_probs=124.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 016902           66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI  145 (380)
Q Consensus        66 ~~~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l  145 (380)
                      ..|......+...++..+..+++..+++.|+.+++|++..+.+.+.....++..++.++.|+++||+ |||+.+.++.++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~  313 (405)
T TIGR00891       235 KRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL-GRRKAYVCSLLA  313 (405)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchhhhHHHHHH
Confidence            3344444444444444555556777889999999999999999999999999999999999999997 999998887765


Q ss_pred             HHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhh
Q 016902          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (380)
Q Consensus       146 ~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~  225 (380)
                      ..+..+.+...       .                    .+...+.++.++.+++.++..+...++..|.+|++.     
T Consensus       314 ~~~~~~~~~~~-------~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  361 (405)
T TIGR00891       314 GQLLIIPVFAI-------G--------------------ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQ-----  361 (405)
T ss_pred             HHHHHHHHHHh-------C--------------------CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcch-----
Confidence            53322222111       0                    123445555566666666777788889999999877     


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHhhhcch-hhHHHHH
Q 016902          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGA  264 (380)
Q Consensus       226 ~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g-w~~~f~i  264 (380)
                       |++.+++++...++|..++|.+.+++.+..| |...+..
T Consensus       362 -~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       362 -RAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS  400 (405)
T ss_pred             -hHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence             9999999999999999999999999999888 8766654

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.38  E-value=6.9e-11  Score=116.51  Aligned_cols=175  Identities=15%  Similarity=0.068  Sum_probs=131.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 016902           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (380)
Q Consensus        71 ~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~  150 (380)
                      .+.+.+..++..+.++++..+++.|+.+ +|++..+++...+.+.++..++.+++|+++||+ ||++.+.++..+..++.
T Consensus       207 ~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~-~~~~~~~~~~~l~~~~~  284 (393)
T PRK09705        207 AWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQ-DRRKLLMLALVLQLVGF  284 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHH
Confidence            4444455556667778888899999975 899999999999999999999999999999997 99999988877777776


Q ss_pred             HHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhH
Q 016902          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (380)
Q Consensus       151 ~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~  230 (380)
                      +++...       +                    .+...++  .++.+++.++..+.......+.+++++     .+++.
T Consensus       285 ~~~~~~-------~--------------------~~~~~~~--~~l~g~g~g~~~~~~~~~~~~~~~~~~-----~~g~~  330 (393)
T PRK09705        285 CGFIWL-------P--------------------LQLPVLW--AMVCGLGLGGAFPLCLLLALDHSVQPA-----IAGKL  330 (393)
T ss_pred             HHHHHc-------c--------------------chHHHHH--HHHHHHhccchHHHHHHHHHhhcCCHH-----HHHHH
Confidence            654432       0                    1111122  235677777777777777778876321     28999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcch-hhHHHHHHHHHHHHHHHHHHhhcc
Q 016902          231 FNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIGTP  281 (380)
Q Consensus       231 ~~~~~~~~~iG~~i~~~i~~~i~~~~g-w~~~f~i~~~~~~~~~i~~~~~~~  281 (380)
                      +++.+...++++.++|.+.+++.+..| |...|.+.+++.++.+++.+...+
T Consensus       331 ~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  382 (393)
T PRK09705        331 VAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAP  382 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999876 788888877776666555544433

>PRK15075 citrate-proton symporter; Provisional

Probab=99.38  E-value=5.4e-11  Score=118.80  Aligned_cols=153  Identities=14%  Similarity=0.066  Sum_probs=108.3

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH-HH
Q 016902           75 FGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT-GI  153 (380)
Q Consensus        75 ~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~-~l  153 (380)
                      +...++....++++..+++.|+++.+|++..+++.....+.++..++.+++|+++||+ |||++++++.++..+... .+
T Consensus       244 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~  322 (434)
T PRK15075        244 MLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI-GRRPVLIAFTVLAILTAYPAL  322 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHH
Confidence            3444455666777888899999988999988888887788888889999999999998 999988776544332221 11


Q ss_pred             HhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHH
Q 016902          154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF  233 (380)
Q Consensus       154 ~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~  233 (380)
                      .....      .                   .....+.+..++.+++.+...+...++..|.+|++.      |++++++
T Consensus       323 ~~~~~------~-------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~------rg~~~g~  371 (434)
T PRK15075        323 SWLVA------A-------------------PSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEV------RTAGFSL  371 (434)
T ss_pred             HHHHc------C-------------------CchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCc------cchheeH
Confidence            11100      0                   112223334445556666666666788899999887      8999998


Q ss_pred             -HHHHHHHHHHHHHHHHHHhhhcchhh
Q 016902          234 -FYLSVTVGAIVAFTLVVYIQMEHGWG  259 (380)
Q Consensus       234 -~~~~~~iG~~i~~~i~~~i~~~~gw~  259 (380)
                       +.++..+++.++|.+.+++.+..|+.
T Consensus       372 ~~~~~~~~~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        372 AYSLATAIFGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence             45555566788999999999888753

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.37  E-value=5e-11  Score=118.17  Aligned_cols=160  Identities=12%  Similarity=-0.021  Sum_probs=127.1

Q ss_pred             HHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCC
Q 016902           85 YFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMP  164 (380)
Q Consensus        85 ~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~  164 (380)
                      .+++..+++.|+.+.+|++....+.+.+.+.++..++.+++++++|+. ++++.+.++.++..++.+++.+.        
T Consensus       239 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~--------  309 (417)
T PRK10489        239 ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA-RPGLLMLLSTLGSFLAVGLFGLM--------  309 (417)
T ss_pred             HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHHHHHHHHHHHHHHcc--------
Confidence            345666788899888999999999998999999999999999999986 77888888877777776655442        


Q ss_pred             CCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHH
Q 016902          165 NQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIV  244 (380)
Q Consensus       165 ~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i  244 (380)
                                          .+...++++.++.|++.+...+...++..|.+|++.      |++.+++++....+|..+
T Consensus       310 --------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~  363 (417)
T PRK10489        310 --------------------PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEM------LGRINGLWTAQNVTGDAI  363 (417)
T ss_pred             --------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH------HHHHHHHHHHHHhhhHhH
Confidence                                234455666777888887777777888999999777      999999999999999999


Q ss_pred             HHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHhh
Q 016902          245 AFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG  279 (380)
Q Consensus       245 ~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~~~  279 (380)
                      ++.+.+++.+..|+...+++.+++..+..++....
T Consensus       364 g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  398 (417)
T PRK10489        364 GAALLGGLGAMMTPVASASASGFGLLIIGVLLLLV  398 (417)
T ss_pred             HHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHh
Confidence            99999999998898888876666555444444333

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.37  E-value=6.6e-12  Score=103.50  Aligned_cols=131  Identities=20%  Similarity=0.232  Sum_probs=108.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHH
Q 016902          113 NFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYT  192 (380)
Q Consensus       113 ~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~  192 (380)
                      .+..+..++.++.|+++||+ |||+.+.++..+..++.+++...                            .+...+++
T Consensus         6 ~~~~~~~~~~~~~g~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~   56 (141)
T TIGR00880         6 GYALGQLIYSPLSGLLTDRF-GRKPVLLVGLFIFVLSTAMFALS----------------------------SNITVLII   56 (141)
T ss_pred             eehhHHHHHHhhHHHHHhhc-chhHHHHHHHHHHHHHHHHHHHh----------------------------ccHHHHHH
Confidence            34566777889999999997 99999999988888877766543                            23556777


Q ss_pred             HHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHH
Q 016902          193 VLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS  272 (380)
Q Consensus       193 ~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~  272 (380)
                      .+++.+++.+...+....+..|.+|++.      |++..++++....+|..+++.+.+++.+..+|++.|++..+...++
T Consensus        57 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (141)
T TIGR00880        57 ARFLQGFGAAFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAA  130 (141)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHH
Confidence            7888999999888999999999999877      9999999999999999999999999988889999998877766665


Q ss_pred             HHHHHh
Q 016902          273 NMLFFI  278 (380)
Q Consensus       273 ~i~~~~  278 (380)
                      .+....
T Consensus       131 ~~~~~~  136 (141)
T TIGR00880       131 FILLAF  136 (141)
T ss_pred             HHHHhh
Confidence            554443

>TIGR00889 2A0110 nucleoside transporter

Probab=99.36  E-value=4.7e-11  Score=118.79  Aligned_cols=172  Identities=10%  Similarity=0.039  Sum_probs=127.6

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHhcCCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 016902           77 NEMAERMAYFGLSVNMVTFMFYVMHKS--------FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA  148 (380)
Q Consensus        77 ~~~~~~~~~~~i~~~l~~yl~~~~~~s--------~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~l  148 (380)
                      ..++..........+++.|+.+ .|.+        ....+...++..+...++.++.|+++||+ |||+++.++.++..+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~-g~r~~l~~~~~~~~v  293 (418)
T TIGR00889       216 FSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF-GIKKVMLLSLVAWAL  293 (418)
T ss_pred             HHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence            3333333333444566777754 4543        34567788888888888899999999998 999999999998888


Q ss_pred             HHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhh
Q 016902          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD  228 (380)
Q Consensus       149 g~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~  228 (380)
                      +..++.....      .                  ......+++..++.+++.+...++...+++|.+|++.      |+
T Consensus       294 ~~~l~~~~~~------~------------------~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~------~g  343 (418)
T TIGR00889       294 RFGFFAYGDP------E------------------YFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI------RA  343 (418)
T ss_pred             HHHHHHHcCc------c------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HH
Confidence            7666654210      0                  0124456677788899888888888999999999877      99


Q ss_pred             hHHHHHH-HHHHHHHHHHHHHHHHhhhc------chhhHHHHHHHHHHHHHHHHHHhhc
Q 016902          229 RFFNFFY-LSVTVGAIVAFTLVVYIQME------HGWGSAFGALAIAMGISNMLFFIGT  280 (380)
Q Consensus       229 ~~~~~~~-~~~~iG~~i~~~i~~~i~~~------~gw~~~f~i~~~~~~~~~i~~~~~~  280 (380)
                      +.+++++ ....+|..++|.+++++.+.      .||++.|.+.+++.+++.++++...
T Consensus       344 ~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~  402 (418)
T TIGR00889       344 SAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFF  402 (418)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999986 56789999999999999886      4699999888777666655554443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.36  E-value=1.5e-10  Score=113.73  Aligned_cols=169  Identities=15%  Similarity=-0.044  Sum_probs=124.9

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Q 016902           75 FGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGIT  154 (380)
Q Consensus        75 ~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~  154 (380)
                      .+..++.....++..++++.|+.+.+|++...++.+...+.++..++.++.|+++||+ ||++. .++..+..++..++.
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~-~~~~~~~~~~~~~l~  288 (390)
T PRK03545        211 YLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-PSGFL-LIAIALLLVCLLLLL  288 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHH-HHHHHHHHHHHHHHH
Confidence            3334444455555667778888888999999999998889999999999999999997 98764 444444433333322


Q ss_pred             hhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHH
Q 016902          155 LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF  234 (380)
Q Consensus       155 l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~  234 (380)
                      ...                           .+...+++..++.|++.++..+.....+.+..| +.      ++++++++
T Consensus       289 ~~~---------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~g~~  334 (390)
T PRK03545        289 PAA---------------------------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DA------TDVAMALF  334 (390)
T ss_pred             HHh---------------------------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-Cc------HHHHHHHH
Confidence            210                           234455666677788877766666777777665 34      78889998


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHhh
Q 016902          235 YLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG  279 (380)
Q Consensus       235 ~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~~~  279 (380)
                      +....+|..+|+.+++++.+..|++..|++.+++.++++++....
T Consensus       335 ~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  379 (390)
T PRK03545        335 SGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILI  379 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHH
Confidence            888999999999999999999999999998888877777665443

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.36  E-value=2.3e-11  Score=120.80  Aligned_cols=155  Identities=12%  Similarity=0.097  Sum_probs=121.0

Q ss_pred             HHHhHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCC
Q 016902           88 LSVNMVTFMFYVM---HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMP  164 (380)
Q Consensus        88 i~~~l~~yl~~~~---~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~  164 (380)
                      ....++.|+.+.+   +.+....+.+.++..+...++.+++|+++||+ |||+.+.++.++..++.+++.++        
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~l~~~~~~l~~~~--------  312 (420)
T PRK09528        242 FDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI-GAKNALLLAGTIMAVRIIGSGFA--------  312 (420)
T ss_pred             HHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcchhhHHHHHHHHHHHHHHHhc--------
Confidence            4445667766543   55666777888888888889999999999998 99999999888888877776653        


Q ss_pred             CCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHH-HHHHHHHHHH
Q 016902          165 NQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF-FYLSVTVGAI  243 (380)
Q Consensus       165 ~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~-~~~~~~iG~~  243 (380)
                                          .+...+++...+.+++.+...+....++.+.+|++.      +++.+++ +++...+|..
T Consensus       313 --------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a~~~~~~~~~~~~lg~~  366 (420)
T PRK09528        313 --------------------TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------SATIYLVGFQFAKQLGAV  366 (420)
T ss_pred             --------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------eeeeeeehHHHHHHHHHH
Confidence                                234556667778888887777788889999999776      7776665 6778889999


Q ss_pred             HHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHH
Q 016902          244 VAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF  277 (380)
Q Consensus       244 i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~  277 (380)
                      +++.+.+++.+..||+..|.+.+++.++..++.+
T Consensus       367 ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~  400 (420)
T PRK09528        367 FLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISV  400 (420)
T ss_pred             HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999987776665554443

>PRK12382 putative transporter; Provisional

Probab=99.35  E-value=7.2e-11  Score=115.94  Aligned_cols=160  Identities=14%  Similarity=0.100  Sum_probs=124.5

Q ss_pred             HHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcc
Q 016902           81 ERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMK  160 (380)
Q Consensus        81 ~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~  160 (380)
                      ..+.+..+..+.+.|+.+ .|++.  .+.....+.++..++.++.|++.||+ ||++.+.++..+..++.+++.+.    
T Consensus       228 ~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~----  299 (392)
T PRK12382        228 QGVGFAVIGTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRF-GGVKVAIVSLLVETVGLLLLWLA----  299 (392)
T ss_pred             HHHHHhHHHHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeehHHHHHHHHHHHHHHHHc----
Confidence            334455555666777754 56653  44555666777788889999999997 99999998888888777665542    


Q ss_pred             cCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHH
Q 016902          161 VFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV  240 (380)
Q Consensus       161 ~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~i  240 (380)
                                              .+...++++.++.+++.+...+.......|.++++.      |++.+++++....+
T Consensus       300 ------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~  349 (392)
T PRK12382        300 ------------------------PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQV------RGTALGGYAAFQDI  349 (392)
T ss_pred             ------------------------ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHH
Confidence                                    134455667778888888878888888889998777      99999999999999


Q ss_pred             HHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHh
Q 016902          241 GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (380)
Q Consensus       241 G~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~~  278 (380)
                      |..+++.+.+++.+..||++.|.+.+++.+++.++.+.
T Consensus       350 g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  387 (392)
T PRK12382        350 AYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTIL  387 (392)
T ss_pred             HHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999888877777666544

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.35  E-value=1.2e-10  Score=114.37  Aligned_cols=159  Identities=7%  Similarity=-0.075  Sum_probs=112.8

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH-HHHHHHH
Q 016902           74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI-YLAGLTG  152 (380)
Q Consensus        74 i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l-~~lg~~~  152 (380)
                      +.+..++..+++......++.|+ +++|++..+.+.+.+.+.++..+++++.|+++||+ ||+........+ ..+..+.
T Consensus         9 l~~~~~~~~~~~~~~~p~l~~~l-~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~l~~~~   86 (382)
T TIGR00902         9 LALGFFGYFCAYGIFLPFFPAWL-KGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDA-NHIIIALRLLALASAIFAAA   86 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHHH
Confidence            33444444444444556677777 47899999999999999999999999999999998 985433211111 1111111


Q ss_pred             HH-hhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHH
Q 016902          153 IT-LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF  231 (380)
Q Consensus       153 l~-l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~  231 (380)
                      +. .+                            .+...+++.+.+.+.+.+...+...++..+ +. ++      |+..+
T Consensus        87 ~~~~~----------------------------~~~~~l~~~~~l~~~~~~~~~p~~~al~~~-~~-~~------~~~~~  130 (382)
T TIGR00902        87 FSAGA----------------------------HNAWLLFIAIGLFALFFSAGMPIGDALANT-WQ-KQ------FGLDY  130 (382)
T ss_pred             HHHhh----------------------------hhHHHHHHHHHHHHHHHccchhHHHHHHHH-HH-HH------cCCCc
Confidence            11 11                            346777788888888888877777776543 22 22      67788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHH
Q 016902          232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMG  270 (380)
Q Consensus       232 ~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~  270 (380)
                      +......++|..+++.+++++.+..||+..|++.+++..
T Consensus       131 g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~  169 (382)
T TIGR00902       131 GKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLA  169 (382)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHH
Confidence            888888999999999999999999999999987665533

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00897 2A0118 polyol permease family

Probab=99.34  E-value=2.1e-10  Score=113.40  Aligned_cols=175  Identities=14%  Similarity=0.051  Sum_probs=125.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH-HHHHHHHH
Q 016902           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAI-FTTIYLAG  149 (380)
Q Consensus        71 ~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i-~~~l~~lg  149 (380)
                      .+...+..++....+++..++++.|++ ++|++..+++.+...+.++..++.++.|+++||+ |||+.+.. +.+...++
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~l~~~~~  301 (402)
T TIGR00897       224 VLLGGMVRIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKL-GWMNTVRWFGGVGCGIF  301 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHHH
Confidence            455555666777788888888998885 5899999988888888899999999999999997 98887642 22223332


Q ss_pred             HHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhh
Q 016902          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (380)
Q Consensus       150 ~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~  229 (380)
                      .+.+.....   ...                    .+...+++..++.|++.++..+ ......|..| ++      |++
T Consensus       302 ~~~l~~~~~---~~~--------------------~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~-~~------~g~  350 (402)
T TIGR00897       302 TLALYYIPQ---HFG--------------------HSFAVALIIAIALGIFLAGYVP-LAAVFPTLAP-KH------KGA  350 (402)
T ss_pred             HHHHHHHHH---ccC--------------------CcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhCc-ch------hHH
Confidence            222222100   000                    1344455566677777776544 3455566544 34      899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHh
Q 016902          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (380)
Q Consensus       230 ~~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~~  278 (380)
                      .+++++....+|..++|.+.+++.+..||...|++.+++.+++.++..+
T Consensus       351 ~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~  399 (402)
T TIGR00897       351 AMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF  399 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999888877766655443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PTZ00207 hypothetical protein; Provisional

Probab=99.34  E-value=2.1e-10  Score=117.80  Aligned_cols=173  Identities=9%  Similarity=-0.017  Sum_probs=124.5

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 016902           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (380)
Q Consensus        65 ~~~~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~  144 (380)
                      .++|..+...+....+... .|++. .....+.+++|++..+.+++.++.... .++.+++|+++|++ |||++++++.+
T Consensus        24 ~~Rw~~lva~~~~~~~~g~-~y~fs-v~s~~L~~~lgls~~~l~~i~svg~~~-g~~~lp~G~L~Dr~-G~R~vllig~l   99 (591)
T PTZ00207         24 PRRFALLVLGAFCSICTSF-MYAFN-LISGAMQARYNLTQRDLSTITTVGIAV-GYFLLPYSFIYDYL-GPRPIFVLSMT   99 (591)
T ss_pred             cchHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHhCcCHHHHHHHHHHHHHH-HHHHHHHHHHHHHh-CcHHHHHHHHH
Confidence            4566655544444444333 33343 345578999999999988887764433 34566789999998 99999999999


Q ss_pred             HHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhh
Q 016902          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (380)
Q Consensus       145 l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~  224 (380)
                      ++.+|.++++++...  ...                    .+...+++.+++.|+|.+...+.....+.+.|| ++    
T Consensus       100 l~~iG~ll~ala~~~--~i~--------------------~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~----  152 (591)
T PTZ00207        100 VFCLGTLLFALTFQE--VIE--------------------GSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SN----  152 (591)
T ss_pred             HHHHHHHHHHHHhcc--ccc--------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh----
Confidence            999999988875210  000                    257778889999999998888888888999997 44    


Q ss_pred             hhhhhHHHHHHHHHHHHHHH-HHHHHHHhhhcchhhHHHHHHHHHHHHH
Q 016902          225 THLDRFFNFFYLSVTVGAIV-AFTLVVYIQMEHGWGSAFGALAIAMGIS  272 (380)
Q Consensus       225 ~~r~~~~~~~~~~~~iG~~i-~~~i~~~i~~~~gw~~~f~i~~~~~~~~  272 (380)
                        |+...+++.....+|+.+ +++..+++.+  +|++.|++.+++.++.
T Consensus       153 --RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~--~~~~~fl~l~vl~~vv  197 (591)
T PTZ00207        153 --RGAVVAIMKTFTGLGSAILGSIQLAFFSD--NTSAYFFFLMSFALVV  197 (591)
T ss_pred             --hHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHH
Confidence              899999999999999875 5555555543  5666666655554443

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.34  E-value=1.5e-10  Score=113.41  Aligned_cols=153  Identities=16%  Similarity=0.138  Sum_probs=117.4

Q ss_pred             HHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCC
Q 016902           84 AYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFM  163 (380)
Q Consensus        84 ~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~  163 (380)
                      .+....++++.|+++ .|.+....+...+...++..++.++.|+++||+ ||++.+.++.++..++.+.+. .       
T Consensus       215 ~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~~~~-~-------  284 (381)
T PRK03633        215 VLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRF-GRLLVLRVQVFVVILGSIAML-S-------  284 (381)
T ss_pred             HHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-CcHHHHHHHHHHHHHHHHHHh-h-------
Confidence            333445567788864 699988888888888899999999999999998 999998888777776654432 1       


Q ss_pred             CCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHH
Q 016902          164 PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAI  243 (380)
Q Consensus       164 ~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~  243 (380)
                                             ...++..+++.+++.++..+...+...|..|+++      ++...+.++...++|..
T Consensus       285 -----------------------~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~~  335 (381)
T PRK03633        285 -----------------------QAAMAPALFILGAAGFTLYPVAMAWACEKVEHHE------LVAMNQALLLSYTVGSL  335 (381)
T ss_pred             -----------------------hHHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHH------HHHHHHHHHHHHHHHHH
Confidence                                   0112344556676666777888888889887655      67777777888899999


Q ss_pred             HHHHHHHHhhhcchhhHHHHHHHHHHHHHHHH
Q 016902          244 VAFTLVVYIQMEHGWGSAFGALAIAMGISNML  275 (380)
Q Consensus       244 i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~  275 (380)
                      ++|.+.+++.++.||++.|.+.+++.++..+.
T Consensus       336 igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~  367 (381)
T PRK03633        336 LGPSFTAMLMQNYSDNLLFIMIASVSFIYLLM  367 (381)
T ss_pred             HHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence            99999999999999999999877776655433

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.34  E-value=1.7e-10  Score=115.95  Aligned_cols=197  Identities=12%  Similarity=0.064  Sum_probs=134.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hcchhHHHHHH-HHH
Q 016902           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADA----YLGRYWTIAIF-TTI  145 (380)
Q Consensus        71 ~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~----~~GR~~~i~i~-~~l  145 (380)
                      ++.+....+...+++....++++.|+ +.+|.+....+.+..+..+...+..++.|++|||    + |||+.++++ .+.
T Consensus         6 li~~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~-GRRrp~il~g~~~   83 (477)
T TIGR01301         6 LLRVASVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRF-GRRRPFIAAGAAL   83 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCC-CChHHHHHHHHHH
Confidence            45555556666666655666666665 6799999999999999999999999999999995    6 999998875 445


Q ss_pred             HHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhh
Q 016902          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (380)
Q Consensus       146 ~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~  225 (380)
                      ..++++++..+..+..+...          . ............+.++..+..++.....++..++++|++|+++.+   
T Consensus        84 ~~~~l~ll~~~~~~~~~~~~----------~-~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~---  149 (477)
T TIGR01301        84 VAFAVILIGFAADIGHLFGD----------N-LDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARR---  149 (477)
T ss_pred             HHHHHHHHHhCchhhhhccc----------c-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHH---
Confidence            55555555543211100000          0 000000011234455566667788888888999999999977511   


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHh--hhc-------------chhhHHHHHHHHHHHHHHHHHHhhccccc
Q 016902          226 HLDRFFNFFYLSVTVGAIVAFTLVVYI--QME-------------HGWGSAFGALAIAMGISNMLFFIGTPLYR  284 (380)
Q Consensus       226 ~r~~~~~~~~~~~~iG~~i~~~i~~~i--~~~-------------~gw~~~f~i~~~~~~~~~i~~~~~~~~~~  284 (380)
                       ++.++++..+..++|+.+++.++++.  .+.             .+.++.|++.+++++++.++.++..+++.
T Consensus       150 -~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~  222 (477)
T TIGR01301       150 -TRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP  222 (477)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence             36788899999999999999988765  111             15688899988888887777666655543

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.33  E-value=2.2e-10  Score=114.32  Aligned_cols=169  Identities=11%  Similarity=0.034  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhh
Q 016902           78 EMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCA  157 (380)
Q Consensus        78 ~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~  157 (380)
                      .++....+|++.++++.|+.+.+|++..+++...++...+..++.++.|+++||+ |||+++.++.++..+..+++....
T Consensus       252 ~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~~  330 (432)
T PRK10406        252 TAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKI-GRRTSMLCFGSLAALFTVPILSAL  330 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHH
Confidence            3344677888889999999999999988888877777777778888899999997 999988776655433332221110


Q ss_pred             hcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHH-
Q 016902          158 TMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL-  236 (380)
Q Consensus       158 ~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~-  236 (380)
                      .     ..                   .+....+....+..++.+...+....+.+|.||++.      |++++++.+. 
T Consensus       331 ~-----~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~------r~t~~g~~~~~  380 (432)
T PRK10406        331 Q-----NV-------------------SSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQV------RALGVGLSYAV  380 (432)
T ss_pred             H-----cC-------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc------cchhhhHHHHH
Confidence            0     00                   111111111222222333334556778899999988      9999999554 


Q ss_pred             HHHHHHHHHHHHHHHhhhcch-hhHHHHHHHHHHHHHHHHHHh
Q 016902          237 SVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFI  278 (380)
Q Consensus       237 ~~~iG~~i~~~i~~~i~~~~g-w~~~f~i~~~~~~~~~i~~~~  278 (380)
                      +..+++.++|.+.+++.. .| |...+++.+++.+++++..++
T Consensus       381 g~~~~g~~~p~~~~~l~~-~g~~~~~~~~~~~~~~i~~~~~~~  422 (432)
T PRK10406        381 ANALFGGSAEYVALSLKS-IGMETAFFWYVTLMAVVAFLVSLM  422 (432)
T ss_pred             HHHHHHhHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHHHHHHH
Confidence            444445567777776643 45 555565555555555544433

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.33  E-value=2.9e-10  Score=111.60  Aligned_cols=169  Identities=9%  Similarity=-0.076  Sum_probs=137.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 016902           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA  148 (380)
Q Consensus        69 ~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~l  148 (380)
                      +..+..++..++...+.+.+.++.+.|+++ +|.+....+.......+...++.++.+.+.||+ |+++.+.++.++..+
T Consensus       205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~-g~~~~l~~~~~~~~~  282 (382)
T TIGR00902       205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNC-SARDLLLISAIACVG  282 (382)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC-CHHHHHHHHHHHHHH
Confidence            345555566666667777778888999964 899999999888888888888889999999998 999999999999998


Q ss_pred             HHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhh
Q 016902          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD  228 (380)
Q Consensus       149 g~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~  228 (380)
                      +.+++...                            .+...+++...+.|+..|...+....++.+. |+++      ++
T Consensus       283 ~~~~~~~~----------------------------~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~------~~  327 (382)
T TIGR00902       283 RWAIIGAI----------------------------EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE------IA  327 (382)
T ss_pred             HHHHHHhH----------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh------HH
Confidence            88777653                            3566777788999999999999999999987 7666      78


Q ss_pred             hHHHHHH-HHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHH
Q 016902          229 RFFNFFY-LSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNML  275 (380)
Q Consensus       229 ~~~~~~~-~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~  275 (380)
                      ++.+.|+ .+..+|..+++.++|++.+..|+ ..|++.+++.++++++
T Consensus       328 ~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       328 KLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence            8888876 46779999999999999999886 5677766666655544

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.33  E-value=5.9e-12  Score=120.23  Aligned_cols=166  Identities=13%  Similarity=0.074  Sum_probs=141.4

Q ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccccccccCC
Q 016902           99 VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGS  178 (380)
Q Consensus        99 ~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~  178 (380)
                      .++-++++.+++...+.....+..++.|.+.|++ |++-.++++.++..+.++++++.                      
T Consensus       100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~i-Gy~ipm~~Gl~vmf~sTilFafg----------------------  156 (464)
T KOG3764|consen  100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDRI-GYKIPMVAGLFVMFLSTILFAFG----------------------  156 (464)
T ss_pred             CccccccchhHHHHHHHHHHHHhcccchhhHHHh-ccccHHHHHHHHHHHHHHHHHHc----------------------
Confidence            3455677889999999999999999999999997 99999999999999999999885                      


Q ss_pred             CCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Q 016902          179 CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW  258 (380)
Q Consensus       179 c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~gw  258 (380)
                            ..+.+++++|.++|+|.++...+..+++||.|+++..     |++.++.......+|-++||.+++.+.+..|+
T Consensus       157 ------~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~e-----r~~vmGialgfislG~lvgPpfGGilYe~~Gk  225 (464)
T KOG3764|consen  157 ------NSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNE-----RGSVMGIALGFISLGVLVGPPFGGILYEFAGK  225 (464)
T ss_pred             ------chhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchh-----hhHHHHHHHHHHhccceecCCcccchHhhcCC
Confidence                  3577899999999999999999999999999998762     89999998889999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhcccccc---cCCCCCccchHHH
Q 016902          259 GSAFGALAIAMGISNMLFFIGTPLYRH---RLPGGSPLTRVAQ  298 (380)
Q Consensus       259 ~~~f~i~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~  298 (380)
                      ..+|++.++++++..++.++..+.++.   ..+++.|+.++.+
T Consensus       226 ~aPFlVL~~v~Lld~~L~l~vi~p~~~~~~~~~~~~~~~~Ll~  268 (464)
T KOG3764|consen  226 SAPFLVLAIVLLLDGALQLLVIEPTEMDPDSTEQGTPMWSLLM  268 (464)
T ss_pred             cCcHHHHHHHHHHHHHHHHheeCccccCccccccCccHHHHHh
Confidence            999999998888777765554444332   2455666666553

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.33  E-value=5.8e-11  Score=118.50  Aligned_cols=139  Identities=16%  Similarity=0.114  Sum_probs=115.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhH
Q 016902          108 SNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQM  187 (380)
Q Consensus       108 ~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~  187 (380)
                      +.+++++.++..+|..++|+++|++ |||.+++++.++.+++.+++.++...                         ...
T Consensus        63 S~~vs~f~iG~~~Gs~~~~~la~~~-GRK~~l~~~~~l~~~~~~~~~~s~~~-------------------------~~~  116 (485)
T KOG0569|consen   63 SLIVSIFFIGGMIGSFSSGLLADRF-GRKNALLLSNLLAVLAALLMGLSKSA-------------------------PSF  116 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHh-------------------------hhH
Confidence            5778889999999999999999998 99999999999998888888776321                         357


Q ss_pred             HHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHH-HHhh-hcchhhHHHHHH
Q 016902          188 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV-VYIQ-MEHGWGSAFGAL  265 (380)
Q Consensus       188 ~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~-~~i~-~~~gw~~~f~i~  265 (380)
                      .+++++|++.|+..|......+-|+.|..|.+-      ||..-....++.++|.+++..++ ..+. ....|.+.+.++
T Consensus       117 e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~------RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~  190 (485)
T KOG0569|consen  117 EMLILGRLIVGLACGLSTGLVPMYLTEISPKNL------RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFP  190 (485)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhh------ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHH
Confidence            789999999999999999999999999999888      99988888999999998885544 3343 444699998888


Q ss_pred             HHHHHHHHHHHHh
Q 016902          266 AIAMGISNMLFFI  278 (380)
Q Consensus       266 ~~~~~~~~i~~~~  278 (380)
                      .+..++.++++.+
T Consensus       191 ~i~~~~~l~~l~~  203 (485)
T KOG0569|consen  191 LIPALLQLALLPF  203 (485)
T ss_pred             HHHHHHHHHHHhc
Confidence            8877766666544

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.33  E-value=7.5e-11  Score=117.35  Aligned_cols=165  Identities=14%  Similarity=0.020  Sum_probs=116.2

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCccc
Q 016902           91 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD  170 (380)
Q Consensus        91 ~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~~~c~  170 (380)
                      +...++.+++|++...++.......++..++.+++|+++||+ |||+.+.++.++..++.+++.+......  ++     
T Consensus       305 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----  376 (481)
T TIGR00879       305 YYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF-GRRPLLLIGAAGMAICLFVLGILGASFV--TG-----  376 (481)
T ss_pred             HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHhhccc--CC-----
Confidence            344555667899988888888888888999999999999997 9999999988877777666653211000  00     


Q ss_pred             ccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 016902          171 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV  250 (380)
Q Consensus       171 ~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~  250 (380)
                               .. .......+....++.+....+..+....+.+|.+|++.      |+...++.+...++|+.+++.+.+
T Consensus       377 ---------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~~~~~~~~~~~~~lg~~i~~~~~~  440 (481)
T TIGR00879       377 ---------SS-KSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSL------RPKGISIAVAANWLANFIVGFLFP  440 (481)
T ss_pred             ---------cc-cchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     00 00122222222222222222334666777799999877      999999999999999999999999


Q ss_pred             HhhhcchhhHHHHHHHHHHHHHHHHHHhh
Q 016902          251 YIQMEHGWGSAFGALAIAMGISNMLFFIG  279 (380)
Q Consensus       251 ~i~~~~gw~~~f~i~~~~~~~~~i~~~~~  279 (380)
                      ++.++.+|.+.|++.+++.+++.++.+..
T Consensus       441 ~~~~~~~~~~~f~~~~~~~~~~~i~~~~~  469 (481)
T TIGR00879       441 TMLESIGVGGVFIFFGGLNVLGLIFVYFF  469 (481)
T ss_pred             HHHHhcCccceehhHHHHHHHHHHHHhee
Confidence            99988899999988777766666554443

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.32  E-value=2.6e-10  Score=114.98  Aligned_cols=184  Identities=13%  Similarity=0.055  Sum_probs=144.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh--HHHHHHHHH
Q 016902           68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRY--WTIAIFTTI  145 (380)
Q Consensus        68 ~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~--~~i~i~~~l  145 (380)
                      .|.+..-++..++-+-+...+.+....|.++++|++..+...+..+.++.+.++.+++|++.||+ |-|  ++++++.++
T Consensus       280 ~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~-g~k~~~~l~~~l~~  358 (477)
T PF11700_consen  280 LRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRF-GPKTKRTLLISLIL  358 (477)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHH
Confidence            34555566666776777777888899999999999999999999999999999999999999998 988  888777766


Q ss_pred             HHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhh
Q 016902          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (380)
Q Consensus       146 ~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~  225 (380)
                      +.+-.+.-.+. ..+.....                   .+...+++.-++.|+..|+.++..-++.+++.|++.     
T Consensus       359 ~~~i~~~g~~G-~~~~~~g~-------------------~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~-----  413 (477)
T PF11700_consen  359 WIIIPLYGLFG-FWPSFFGL-------------------KSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR-----  413 (477)
T ss_pred             HHHHHHHHHHH-hhhcccCc-------------------ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch-----
Confidence            53322221110 00000000                   234557776778999999999999999999999877     


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHhhhcch-hhHHHHHHHHHHHHHHHHHHh
Q 016902          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFI  278 (380)
Q Consensus       226 ~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g-w~~~f~i~~~~~~~~~i~~~~  278 (380)
                       .+.+|++|.+..-..+++||++.+.+.+..| -|+++....++.++++++++.
T Consensus       414 -e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~  466 (477)
T PF11700_consen  414 -EAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFF  466 (477)
T ss_pred             -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhh
Confidence             8999999999999999999999999998876 788998888888777776644

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.32  E-value=8.2e-11  Score=117.00  Aligned_cols=176  Identities=15%  Similarity=0.122  Sum_probs=123.9

Q ss_pred             HHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cchhH-HHHHHHHHHHHHHHHHH
Q 016902           79 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYW-TIAIFTTIYLAGLTGIT  154 (380)
Q Consensus        79 ~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~---~GR~~-~i~i~~~l~~lg~~~l~  154 (380)
                      +...+....+..+++.|+++.+|++...++.+.++..+...+..++.|+++||.   +|||| .++++.++..++.+++.
T Consensus         9 ~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~   88 (437)
T TIGR00792         9 FGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLF   88 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHH
Confidence            344455555667889999999999999999999999999999999999999983   48865 56667777777766665


Q ss_pred             hhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHH
Q 016902          155 LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF  234 (380)
Q Consensus       155 l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~  234 (380)
                      ..   |...                   .......+++.+++.+++.+....+..++.+|..++.  +|   |++..++.
T Consensus        89 ~~---~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~--~~---R~~~~~~~  141 (437)
T TIGR00792        89 TT---PDFS-------------------ATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDP--RE---RESLSTFR  141 (437)
T ss_pred             hC---CCCC-------------------cchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCH--HH---HHHHHHHH
Confidence            42   1110                   0023445555666777777777777788888887532  22   78888888


Q ss_pred             HHHHHHHHHHHHHHHHHhh-------hcchhhHHHHHHHHHHHHHHHHHHhhcc
Q 016902          235 YLSVTVGAIVAFTLVVYIQ-------MEHGWGSAFGALAIAMGISNMLFFIGTP  281 (380)
Q Consensus       235 ~~~~~iG~~i~~~i~~~i~-------~~~gw~~~f~i~~~~~~~~~i~~~~~~~  281 (380)
                      ....++|..++..+.+.+.       +..+|++.+.+.+++.++..++.+...+
T Consensus       142 ~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~  195 (437)
T TIGR00792       142 RFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTK  195 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCE
Confidence            7778888777666554443       2457999988877776666555444433

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.32  E-value=1.4e-10  Score=113.70  Aligned_cols=153  Identities=8%  Similarity=-0.013  Sum_probs=110.4

Q ss_pred             HHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh----HHHHHHHHHHHHHHHHHHhhh
Q 016902           82 RMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRY----WTIAIFTTIYLAGLTGITLCA  157 (380)
Q Consensus        82 ~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~----~~i~i~~~l~~lg~~~l~l~~  157 (380)
                      .+++..+...++.|++ ++|.+..+.+.+++.+.+...++.+++|+++||+ ||+    +.+.+...+..   +.+... 
T Consensus        17 ~~~~g~~~p~l~~~l~-~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~---~~~~~~-   90 (382)
T PRK11128         17 FFAYGVFLPFWSVWLK-GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDP-SQLIPALRLLALLTLLFA---VAFWFG-   90 (382)
T ss_pred             HHHHHHHhhhHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-cchHHHHHHHHHHHHHHH---HHHHHh-
Confidence            3444445566778885 6899999999999999999999999999999998 984    23222221111   111111 


Q ss_pred             hcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHH
Q 016902          158 TMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLS  237 (380)
Q Consensus       158 ~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~  237 (380)
                            .                    .+.+.+++.+++.+++.+...+...++..|..  ++      |+..++.....
T Consensus        91 ------~--------------------~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~--~~------~~~a~~~~~~~  136 (382)
T PRK11128         91 ------A--------------------HSFWLLFVAIGLFNLFFSPLVPLTDALANTWQ--KQ------IGLDYGKVRLW  136 (382)
T ss_pred             ------c--------------------ccHHHHHHHHHHHHHHHcccccHHHHHHHHHH--hh------ccCCcchHHHH
Confidence                  0                    34667778888889988888888777777652  22      55666666777


Q ss_pred             HHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHH
Q 016902          238 VTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM  274 (380)
Q Consensus       238 ~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i  274 (380)
                      .++|..++|.+++++.+++||+..|++.++..++.++
T Consensus       137 ~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~  173 (382)
T PRK11128        137 GSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLL  173 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHH
Confidence            7899999999999999999999999877665544433

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.32  E-value=3.5e-10  Score=114.97  Aligned_cols=171  Identities=11%  Similarity=0.076  Sum_probs=122.1

Q ss_pred             HHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhh
Q 016902           79 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVN-NFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCA  157 (380)
Q Consensus        79 ~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~-~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~  157 (380)
                      ++..+..+....+.++|+.+++|++..+.+.... ...++..++.+++|+++||+ ||++.+.++.++..++.+++.+..
T Consensus       232 ~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~-g~~~~l~i~~~l~~l~~l~~~~l~  310 (491)
T PRK11010        232 VLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL-SLFRALMIFGILQGVSNAGYWLLS  310 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555555667788888889999999998874 55678889999999999998 999888776665555443332211


Q ss_pred             hcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHH
Q 016902          158 TMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLS  237 (380)
Q Consensus       158 ~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~  237 (380)
                      ..    .                    .+...+++..++..++.|...+...++..+..+++.      .++.+++++..
T Consensus       311 ~~----~--------------------~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~------~~t~~gl~~s~  360 (491)
T PRK11010        311 IT----D--------------------KNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSF------SATQFALLSAL  360 (491)
T ss_pred             hc----c--------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------cHHHHHHHHHH
Confidence            10    0                    122333444445444444444566778888888777      78888898888


Q ss_pred             HHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHhhc
Q 016902          238 VTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT  280 (380)
Q Consensus       238 ~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~~~~  280 (380)
                      .++|..+++.+.|++.+..||+..|.+.+++.++++++....+
T Consensus       361 ~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~  403 (491)
T PRK11010        361 SAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCR  403 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999988888999999999999999988888877766665543

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.31  E-value=1.5e-10  Score=112.38  Aligned_cols=130  Identities=22%  Similarity=0.270  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHH
Q 016902          119 QASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITG  198 (380)
Q Consensus       119 ~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g  198 (380)
                      .++.++.|+++||+ |||++++++.++..++.+++.++......                    .......++++|++.|
T Consensus        49 ~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~r~l~G  107 (394)
T TIGR00883        49 PLGAIVFGHFGDRI-GRKKTLVITLLMMGIGTLLIGLLPSYATI--------------------GIWAPILLLLARLIQG  107 (394)
T ss_pred             hhHHHHhhhhhhhh-hhHHHHHHHHHHHHHHHHHHhhCCChhhh--------------------HHHHHHHHHHHHHHHH
Confidence            46789999999998 99999999999999888877764210000                    0011235788899999


Q ss_pred             HhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh--------hcchhhHHHHHHHHHHH
Q 016902          199 FGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAIAMG  270 (380)
Q Consensus       199 ~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~--------~~~gw~~~f~i~~~~~~  270 (380)
                      ++.+...+....+++|.+++++      |+...++.+.+..+|..+++.+...+.        +..+|++.|.+.+++.+
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  181 (394)
T TIGR00883       108 FSLGGEWGGAALYLAEYAPPGK------RGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVL  181 (394)
T ss_pred             hhccccccccHHHhhhcCCccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHH
Confidence            9999999999999999999877      899999999999999999888776553        35689999988776655


Q ss_pred             HHHHH
Q 016902          271 ISNML  275 (380)
Q Consensus       271 ~~~i~  275 (380)
                      ++.++
T Consensus       182 ~~~~~  186 (394)
T TIGR00883       182 IGLYL  186 (394)
T ss_pred             HHHHH
Confidence            55443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.29  E-value=1.3e-10  Score=116.07  Aligned_cols=180  Identities=15%  Similarity=0.079  Sum_probs=119.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 016902           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (380)
Q Consensus        70 ~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg  149 (380)
                      ..+...+..++.....+++..+++.|+++..|++...+++....+.+...++.+++|+++||+ |+++....+..+..+.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~~~~~~  330 (438)
T TIGR00712       252 LLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FKGNRGATGVFFMTLV  330 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcccHHHHHHHHHH
Confidence            345555555566666778888999999998999999999888888899999999999999997 7543333333222221


Q ss_pred             HHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhh
Q 016902          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (380)
Q Consensus       150 ~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~  229 (380)
                      .+.+.....    .+.                   .+....++..++.|++..+..........|.+|++.      |++
T Consensus       331 ~~~~~~~~~----~~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~  381 (438)
T TIGR00712       331 TIAVIVYWM----NPA-------------------GNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGT  381 (438)
T ss_pred             HHHHHHHHh----cCC-------------------CchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhh------eee
Confidence            111111000    000                   112223334444555443433333456678899777      899


Q ss_pred             HHHHHHHHHHHHH-HHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHhh
Q 016902          230 FFNFFYLSVTVGA-IVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG  279 (380)
Q Consensus       230 ~~~~~~~~~~iG~-~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~~~  279 (380)
                      +.++++...++|+ .++|.+.+++.+..||.++|++.+++.+++++..+..
T Consensus       382 ~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  432 (438)
T TIGR00712       382 AAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV  432 (438)
T ss_pred             ehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence            9999888877764 6899999999998899999988777666666555443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.29  E-value=9.8e-11  Score=117.81  Aligned_cols=172  Identities=8%  Similarity=0.025  Sum_probs=130.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHH
Q 016902           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY-LGRYWTIAIFTTIYLA  148 (380)
Q Consensus        70 ~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~-~GR~~~i~i~~~l~~l  148 (380)
                      ..+..++..++..+.+++...+++.|+. ++|++..+++...+...++..++.+++|+++|+. +++++..+++..+...
T Consensus       242 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~  320 (455)
T TIGR00892       242 GFLVYLSGNVIMFLGFFAPIIFLVPYAK-DKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFN  320 (455)
T ss_pred             hHHHHHHHHHHHHHHccchHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHH
Confidence            3455555566666777777788889986 4799999999999998888889999999999974 2444444443333332


Q ss_pred             HH--HHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhh
Q 016902          149 GL--TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (380)
Q Consensus       149 g~--~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~  226 (380)
                      +.  +++.+.                            .+...+++.+++.|++.++..++..+...|.++++.      
T Consensus       321 ~l~~ll~~~~----------------------------~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~------  366 (455)
T TIGR00892       321 GLTHLLCALA----------------------------GDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQR------  366 (455)
T ss_pred             HHHHHHHHHh----------------------------chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHH------
Confidence            32  222221                            235566777888899999989999999999998776      


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhhcc-hhhHHHHHHHHHHHHHHHHH
Q 016902          227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-GWGSAFGALAIAMGISNMLF  276 (380)
Q Consensus       227 r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~-gw~~~f~i~~~~~~~~~i~~  276 (380)
                      +++.+++++...++|..++|.+++++.+.. +|++.|++.+++.+++.+..
T Consensus       367 ~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~~  417 (455)
T TIGR00892       367 FSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLFL  417 (455)
T ss_pred             HhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHHH
Confidence            899999999999999999999999998877 49999998887776665543

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.29  E-value=4.6e-11  Score=119.86  Aligned_cols=149  Identities=19%  Similarity=0.229  Sum_probs=132.1

Q ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccccccccC
Q 016902           98 YVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLG  177 (380)
Q Consensus        98 ~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~  177 (380)
                      .+++++..+.+.+.+.+..++.++.+.+|+++||| |-|+++.++.++..++.++..+++.                   
T Consensus        66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-G~r~v~~~~~~~sa~~t~l~P~aa~-------------------  125 (466)
T KOG2532|consen   66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-GARRVFFISGLISALLTLLTPLAAS-------------------  125 (466)
T ss_pred             ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence            36888999999999999999999999999999998 9999999999999999988888754                   


Q ss_pred             CCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhc-c
Q 016902          178 SCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME-H  256 (380)
Q Consensus       178 ~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~-~  256 (380)
                             .....+++.|+++|++.|...|++..+.+...|..+      |+++.++.+.+..+|..++..+.+++.+. .
T Consensus       126 -------~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~  192 (466)
T KOG2532|consen  126 -------IGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSGLLCESSL  192 (466)
T ss_pred             -------hcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCC
Confidence                   223367889999999999999999999999999777      99999999999999999999999999888 8


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhh
Q 016902          257 GWGSAFGALAIAMGISNMLFFIG  279 (380)
Q Consensus       257 gw~~~f~i~~~~~~~~~i~~~~~  279 (380)
                      ||++.|++.+++.++..++++..
T Consensus       193 GW~sifY~~g~~g~i~~~~w~~~  215 (466)
T KOG2532|consen  193 GWPSIFYVFGIVGLIWFILWFLF  215 (466)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHH
Confidence            99999999888877666665443

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.27  E-value=5.2e-10  Score=114.02  Aligned_cols=178  Identities=14%  Similarity=0.089  Sum_probs=135.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 016902           73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG  152 (380)
Q Consensus        73 ~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~  152 (380)
                      .++...++.+++.......+.-+ ..++.-|....+++.....+-..+..+++|.++||+ .||+.++.+.++..+..+.
T Consensus        14 ~lw~a~~iS~lG~~~~~va~~wl-v~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-drrrili~~~~~~~~~~~~   91 (524)
T PF05977_consen   14 RLWIAQLISNLGDWMQTVALAWL-VTQLTGSPLMVALVQAASTLPILLLSLFAGALADRF-DRRRILILSQLLRALVALL   91 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHHHHHH
Confidence            33444455555544333333333 335566778888888888888888999999999998 9999999998887766666


Q ss_pred             HHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHH
Q 016902          153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN  232 (380)
Q Consensus       153 l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~  232 (380)
                      +++......                       .+...+++..++.|++.+...|...+++.|+.|+++      ...+.+
T Consensus        92 L~~l~~~~~-----------------------~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~------L~~A~a  142 (524)
T PF05977_consen   92 LAVLAFFGL-----------------------LSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED------LPAANA  142 (524)
T ss_pred             HHHHHHhCc-----------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh------HHHHHH
Confidence            555432111                       356677777889999999999999999999999877      889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHhhcc
Q 016902          233 FFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP  281 (380)
Q Consensus       233 ~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~~~~~  281 (380)
                      +.....++.-.+||.++|.+....|-.+.|.+-++..+++++++...++
T Consensus       143 l~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~  191 (524)
T PF05977_consen  143 LNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKP  191 (524)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            9999999999999999999988888888999888877766555444433

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR01272 gluP glucose/galactose transporter

Probab=99.27  E-value=6e-10  Score=106.48  Aligned_cols=165  Identities=10%  Similarity=-0.006  Sum_probs=123.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 016902           68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYV--MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI  145 (380)
Q Consensus        68 ~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~--~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l  145 (380)
                      ++..++..+..++...+-.++..+++.|+.+.  +|++..+++...+.+.++..++.+++++++||+ |+++.+.++.++
T Consensus       139 ~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~-g~~~~l~~~~~l  217 (310)
T TIGR01272       139 FTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMI-SQGRYLAFNAFL  217 (310)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHH
Confidence            34455555555555445566788899999854  799999999999999999999999999999997 999998888777


Q ss_pred             HHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhh
Q 016902          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (380)
Q Consensus       146 ~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~  225 (380)
                      .+++.+++...                            .... ...+.++.|++.+.+.|...+...+.++++..    
T Consensus       218 ~~~~~~l~~~~----------------------------~~~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~~----  264 (310)
T TIGR01272       218 AVLLSIGAALT----------------------------HGYV-AMWFVLALGLFNSIMFPTIFSLALNALGRHTS----  264 (310)
T ss_pred             HHHHHHHHHHc----------------------------CCHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh----
Confidence            77766444332                            0111 22355678999999999999999898885431    


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHH
Q 016902          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMG  270 (380)
Q Consensus       226 ~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~  270 (380)
                       +++++  . ....+|+.+.|.+.|++.|..|.+.+|+++.++.+
T Consensus       265 -~asai--~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~~~  305 (310)
T TIGR01272       265 -QGSGI--L-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPCYL  305 (310)
T ss_pred             -hhHHH--H-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence             34433  3 45668999999999999998898888886665543

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.24  E-value=4.1e-10  Score=103.24  Aligned_cols=173  Identities=17%  Similarity=0.106  Sum_probs=131.9

Q ss_pred             CcccCCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHH
Q 016902           61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA  140 (380)
Q Consensus        61 ~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~  140 (380)
                      ...........|.+..+.++-..+.+-+.+-.+.++++.+|+|+..++++.+...+.+...+++.|.++|++ ||+-+.+
T Consensus       256 Ltdv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-G~n~~wv  334 (459)
T KOG4686|consen  256 LTDVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-GFNLWWV  334 (459)
T ss_pred             cccccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-cceehhH
Confidence            333334444567777777766666666667778899999999999999999999999999999999999998 9986555


Q ss_pred             HH-HHHHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCC
Q 016902          141 IF-TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER  219 (380)
Q Consensus       141 i~-~~l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~  219 (380)
                      .+ ++..+++..+++++.                              ..-+++..+.|+..........+.++-..|++
T Consensus       335 ~~a~~~tl~~H~~l~Ft~------------------------------lsPy~~m~~lGLsysllAcslWP~va~~vpE~  384 (459)
T KOG4686|consen  335 ASACILTLLGHSGLFFTF------------------------------LSPYTSMTFLGLSYSLLACSLWPCVASLVPEE  384 (459)
T ss_pred             HHHHHHHHHHhhhHHhhh------------------------------ccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHH
Confidence            54 455666666666642                              22466777777777666666888889999988


Q ss_pred             CchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcch---hhHHHHHHHHHHH
Q 016902          220 SKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG---WGSAFGALAIAMG  270 (380)
Q Consensus       220 ~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g---w~~~f~i~~~~~~  270 (380)
                      .      .+++++..+-..|+|-.+.+++++.|.+.-|   |--.|.+..+.+.
T Consensus       385 q------LGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~a  432 (459)
T KOG4686|consen  385 Q------LGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMA  432 (459)
T ss_pred             H------hcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHH
Confidence            7      9999999999999999999999999987655   4445554444443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.23  E-value=3.1e-10  Score=112.68  Aligned_cols=164  Identities=8%  Similarity=-0.082  Sum_probs=113.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHH-HHHHHHHHH
Q 016902           70 AALFIFGNEMAERMAYFGLSVNMVTFMFY-VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWT-IAIFTTIYL  147 (380)
Q Consensus        70 ~~~~i~~~~~~~~~~~~~i~~~l~~yl~~-~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~-i~i~~~l~~  147 (380)
                      ..+...+..++....++++.++++.|+++ ..|++..+++.......++..++.+++|+++||+ |||+. +.+..++..
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~-~~r~~~~~~~~~~~~  321 (412)
T TIGR02332       243 AIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRL-KERKHHTALPYLFAA  321 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhccc-CccHHHHHHHHHHHH
Confidence            45666677777778888899999999976 2477888888888899999999999999999997 87664 333333333


Q ss_pred             HHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhh
Q 016902          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (380)
Q Consensus       148 lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r  227 (380)
                      ++.++ ....                           .+....+++..+.++|.....+.......|.+|++.      |
T Consensus       322 ~~~~~-~~~~---------------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~  367 (412)
T TIGR02332       322 AGWLL-ASAT---------------------------DHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQA------R  367 (412)
T ss_pred             HHHHH-HHhc---------------------------CCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHH------H
Confidence            33221 1110                           011112222223334433333333444466777666      9


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhcch-hhHHHHHHHHH
Q 016902          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIA  268 (380)
Q Consensus       228 ~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g-w~~~f~i~~~~  268 (380)
                      +.++++.+...++|+.++|.+.+.+.+..| |.++|++.+++
T Consensus       368 ~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~  409 (412)
T TIGR02332       368 AIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL  409 (412)
T ss_pred             HHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence            999999999999999999999999988775 99998876654

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00788 fbt folate/biopterin transporter

Probab=99.21  E-value=1.3e-09  Score=110.19  Aligned_cols=171  Identities=8%  Similarity=-0.023  Sum_probs=127.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----hhHHHHHHHHH
Q 016902           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLG-----RYWTIAIFTTI  145 (380)
Q Consensus        71 ~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~G-----R~~~i~i~~~l  145 (380)
                      ...+....+.+.+. +.+...+..++.+++|++.++.+...+...+...+-++ +|+++|++ +     ||+.++++.++
T Consensus        28 ~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~-~i~G~rRr~~l~~~~~l  104 (468)
T TIGR00788        28 LAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTF-PLFGYTKRWYLVLSGLL  104 (468)
T ss_pred             HHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhc-CCCCccchHHHHHHHHH
Confidence            44555577788887 66667788888889999999998888888888888766 99999998 7     67777777655


Q ss_pred             HH-HHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhh
Q 016902          146 YL-AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (380)
Q Consensus       146 ~~-lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~  224 (380)
                      .. ++...++..       +                    .......+.+++.+++.+....+.-++..|+.+ +++.  
T Consensus       105 ~~~~~~~~l~~~-------~--------------------~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~--  154 (468)
T TIGR00788       105 GSAILYGLLPGK-------V--------------------SSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPS--  154 (468)
T ss_pred             HHHHHHHhcccc-------c--------------------chHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCC--
Confidence            42 222221110       0                    123333446788999999999999999999998 3321  


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHH
Q 016902          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNML  275 (380)
Q Consensus       225 ~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~  275 (380)
                       .++...++.+.+.++|..+++.+++++.+..+|+..|++.+++.++..+.
T Consensus       155 -~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~  204 (468)
T TIGR00788       155 -AGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFV  204 (468)
T ss_pred             -cCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHH
Confidence             24556667777788999999999999999899999999888777666443

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.21  E-value=1.9e-09  Score=106.87  Aligned_cols=146  Identities=15%  Similarity=0.041  Sum_probs=105.2

Q ss_pred             HHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCC
Q 016902           84 AYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFM  163 (380)
Q Consensus        84 ~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~  163 (380)
                      ..+++..+++.|+.+ .|++....+...+...++..++.+++|+++||+ |||+.+.++.++..++.+++....      
T Consensus       246 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~~------  317 (426)
T PRK12307        246 ANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI-GLKKTFSIGLLMSFLFIFPLFRIP------  317 (426)
T ss_pred             HHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHc------
Confidence            334456678888875 699988888888888888999999999999998 999998888777665544433210      


Q ss_pred             CCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHH
Q 016902          164 PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAI  243 (380)
Q Consensus       164 ~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~  243 (380)
                       .                   .....+.+..+..+++..+..+..+.+..|.+|++.      |++.+++.+....+|+.
T Consensus       318 -~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~~~~  371 (426)
T PRK12307        318 -Q-------------------DNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEV------RGLGTGLIYNLAATSGT  371 (426)
T ss_pred             -c-------------------ccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHH------HhhhhhHHHHHHhHHHH
Confidence             0                   111112122222333333445566778899999877      99999998888899999


Q ss_pred             HHHHHHHHhhhcchhhHHHH
Q 016902          244 VAFTLVVYIQMEHGWGSAFG  263 (380)
Q Consensus       244 i~~~i~~~i~~~~gw~~~f~  263 (380)
                      ++|.+.+++.+..|+....+
T Consensus       372 ~gp~~~g~l~~~~g~~~~~~  391 (426)
T PRK12307        372 FNSMAATWLGITMGLGAALT  391 (426)
T ss_pred             HHHHHHHHHHHcccHHHHHH
Confidence            99999999998888665433

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.21  E-value=7.4e-10  Score=112.11  Aligned_cols=174  Identities=11%  Similarity=0.037  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhH-----HHHHHHHHH
Q 016902           72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYW-----TIAIFTTIY  146 (380)
Q Consensus        72 ~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~-----~i~i~~~l~  146 (380)
                      |.+.+..++.....+++..+++.|+.+++|++...++...+++.++..++.+++|+++||+ |||+     ..+......
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-~~r~~~~~r~~~~~~~~~  333 (476)
T PLN00028        255 WILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVA-ARRFGMRGRLWALWIVQT  333 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHhcCcchhHHHHHHHHH
Confidence            4444444444455556667789999989999999999999999999999999999999997 8762     222111111


Q ss_pred             HHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhh
Q 016902          147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (380)
Q Consensus       147 ~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~  226 (380)
                      +.+..++.+. .     .                    .+.....+..++.+++.++..+...++..+..+ +.      
T Consensus       334 l~~i~~~~~~-~-----~--------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~------  380 (476)
T PLN00028        334 LGGVFCIWLG-R-----A--------------------NSLGAAIVVMILFSIFVQAACGATFGIVPFVSR-RS------  380 (476)
T ss_pred             HHHHHHHHhc-c-----c--------------------chHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hh------
Confidence            1111111111 0     0                    123333444455555555555555555555443 33      


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHhhc
Q 016902          227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT  280 (380)
Q Consensus       227 r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~~~~  280 (380)
                      ++...++.+...++|+.+++.+.+ ..+..+|..+|++.+++.+++.++.++.+
T Consensus       381 ~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~  433 (476)
T PLN00028        381 LGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH  433 (476)
T ss_pred             chhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence            788888887777788877776543 22344699999988888777777665553

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.21  E-value=4e-09  Score=104.10  Aligned_cols=167  Identities=12%  Similarity=-0.098  Sum_probs=118.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 016902           72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT  151 (380)
Q Consensus        72 ~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~  151 (380)
                      +...+..++..+..++.....+.|+.+.+|++..+.+.......++..++.++.|+++||+ ||++.+.++.++..++.+
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~g~~  296 (406)
T PRK15402        218 VAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR-PLRSLIRMGLWPMVAGLL  296 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHH
Confidence            3333333344444455556678888888999998888777777777888899999999998 999999998888888877


Q ss_pred             HHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHH
Q 016902          152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF  231 (380)
Q Consensus       152 ~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~  231 (380)
                      ++.+....   .+                    .+...++++.++.++|.+...+....+.....+ ++      +++..
T Consensus       297 ~~~~~~~~---~~--------------------~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~------~g~~~  346 (406)
T PRK15402        297 LAALATVI---SS--------------------HAYLWLTAGLSLYAFGIGLANAGLYRLTLFSSD-VS------KGTVS  346 (406)
T ss_pred             HHHHHHHc---cc--------------------ccHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcc-cc------ccHHH
Confidence            76653210   00                    234556677788888888776666555433332 44      89999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHH
Q 016902          232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAM  269 (380)
Q Consensus       232 ~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~  269 (380)
                      +.+++...+|..+|+.+.+++.+..++....++.+++.
T Consensus       347 ~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~  384 (406)
T PRK15402        347 AAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANG  384 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHH
Confidence            99999999999999999999887777655444443333

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.21  E-value=2.6e-09  Score=103.90  Aligned_cols=179  Identities=16%  Similarity=0.089  Sum_probs=137.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 016902           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (380)
Q Consensus        70 ~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg  149 (380)
                      .++..+...++...+.|...+++-+|+++..|++....+++...|.++..++.+++|+++||  +.++++....++..+.
T Consensus       212 ~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a~~  289 (394)
T COG2814         212 GVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLALA  289 (394)
T ss_pred             hHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHHHH
Confidence            46777777777788888888999999999999999999999999999999999999999998  7888887777776666


Q ss_pred             HHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhh
Q 016902          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (380)
Q Consensus       150 ~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~  229 (380)
                      ++.+.+..                           .+.....+..++.|+..+........-.++ .-+++      +..
T Consensus       290 ~l~l~~~~---------------------------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~------~~~  335 (394)
T COG2814         290 LLALTFTG---------------------------ASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDA------ADL  335 (394)
T ss_pred             HHHHHHhc---------------------------chHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCc------hHH
Confidence            66655531                           233444455555566555544444455555 22344      677


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHhhccccc
Q 016902          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYR  284 (380)
Q Consensus       230 ~~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~~~  284 (380)
                      ..+++....|+|..+|..+++.+.++.|+....++.+++.++++++.+...+.++
T Consensus       336 a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~~~~  390 (394)
T COG2814         336 AGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSARKDR  390 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            7788888888888888889999999999999999999998888887766655443

>PRK09669 putative symporter YagG; Provisional

Probab=99.20  E-value=8.7e-10  Score=110.43  Aligned_cols=185  Identities=10%  Similarity=0.030  Sum_probs=121.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cchhHH-HHHHH
Q 016902           68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWT-IAIFT  143 (380)
Q Consensus        68 ~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~---~GR~~~-i~i~~  143 (380)
                      ++.-+.-.+..+..++.+..+..+++.|+++.+|++...++.+..+..+.-.+..++.|+++||.   +||||. ++++.
T Consensus         8 ~~~~~~yg~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~   87 (444)
T PRK09669          8 TKDKIGYGLGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFA   87 (444)
T ss_pred             HHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHH
Confidence            33333333444566666666778899999999999999999999999999999999999999983   388655 44565


Q ss_pred             HHHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchh
Q 016902          144 TIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY  223 (380)
Q Consensus       144 ~l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~  223 (380)
                      +...+..+++...   |....                   ......+++...+.+++......+..++.+|..++.  +|
T Consensus        88 ~~~~i~~~l~f~~---p~~~~-------------------~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~--~e  143 (444)
T PRK09669         88 IPFGVVCLLTFYT---PDFGA-------------------TGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDP--RE  143 (444)
T ss_pred             HHHHHHHHHHHhC---CCCCc-------------------chHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCH--HH
Confidence            6665655444331   11100                   123445555555666666677777788999988542  22


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh-------cchhhHHHHHHHHHHHHHHHHHHhh
Q 016902          224 KTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-------EHGWGSAFGALAIAMGISNMLFFIG  279 (380)
Q Consensus       224 ~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~-------~~gw~~~f~i~~~~~~~~~i~~~~~  279 (380)
                         |.+..++.....++|..+++.+...+..       ..||+..+.+.+++..+..++.+..
T Consensus       144 ---R~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~  203 (444)
T PRK09669        144 ---RHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFM  203 (444)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCC
Confidence               7788888777777777776654433221       2467777776666655554443333

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.20  E-value=2.2e-09  Score=108.04  Aligned_cols=179  Identities=17%  Similarity=0.079  Sum_probs=120.1

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH-------
Q 016902           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTI-------  139 (380)
Q Consensus        67 ~~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i-------  139 (380)
                      +++.++.+.+..++....++.+.++++.|+.+.+|++..+++....+..++..++.+++|+++|++ ++|+..       
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~-~~~~~~~~~~~~~  337 (465)
T TIGR00894       259 KSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFL-KSSKTLSLTAARK  337 (465)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHHHH
Confidence            445678888888888888888999999999999999999999999999999999999999999987 543211       


Q ss_pred             -HHHHHHHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCC
Q 016902          140 -AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE  218 (380)
Q Consensus       140 -~i~~~l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~  218 (380)
                       ..+.....++..++.+...     .                    .+....++.+.+.+.+.++..+.......|..+.
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~-----~--------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  392 (465)
T TIGR00894       338 IFNGIGGLGPGIFAYALPYL-----S--------------------AAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR  392 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHc-----C--------------------CchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh
Confidence             1111111111111111100     0                    1122233334444444444444444444455543


Q ss_pred             CCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcc---hhhHHHHHHHHHHHHHHHHHHh
Q 016902          219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH---GWGSAFGALAIAMGISNMLFFI  278 (380)
Q Consensus       219 ~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~---gw~~~f~i~~~~~~~~~i~~~~  278 (380)
                       .      ++...++.++..++|+.++|.+.+++.+..   +|...|.+.++..+++.++...
T Consensus       393 -~------~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~  448 (465)
T TIGR00894       393 -F------LGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI  448 (465)
T ss_pred             -H------HHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence             3      899999999999999999999999987643   4888888887777776655443

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.19  E-value=6.6e-10  Score=107.34  Aligned_cols=183  Identities=13%  Similarity=-0.016  Sum_probs=139.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 016902           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA  148 (380)
Q Consensus        69 ~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~l  148 (380)
                      +..|.+.+..+..--++.++..+++.|++++|+.+..+++.+...+.....+.-++||+||||+ |.+|++++.....++
T Consensus       218 ~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~-Gg~rv~~~~f~~~~~  296 (417)
T COG2223         218 KDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI-GGRRVTLAVFVGMAL  296 (417)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhc-cchhHHHHHHHHHHH
Confidence            3468888888888888889999999999999999999999999999999999999999999998 988888888888887


Q ss_pred             HHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhh
Q 016902          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD  228 (380)
Q Consensus       149 g~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~  228 (380)
                      +..++.+...   ...                  .+.+...++...+..++..|.-...+..++...|+.+       -+
T Consensus       297 ~~~~l~~~~~---~~~------------------~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~-------~G  348 (417)
T COG2223         297 AAALLSLFLT---GFG------------------HGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKE-------TG  348 (417)
T ss_pred             HHHHHHcccc---ccc------------------cCcchHHHHHHHHHHHHHhccCcchheeechHHHHhh-------hh
Confidence            7777665410   000                  0022333444344444445555555666666677642       57


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhcch-hhHHHHHHHHHHHHHHHHHHhhc
Q 016902          229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIGT  280 (380)
Q Consensus       229 ~~~~~~~~~~~iG~~i~~~i~~~i~~~~g-w~~~f~i~~~~~~~~~i~~~~~~  280 (380)
                      ...++......+|++.-|...+...+..| +...|++...+.+++.++.+...
T Consensus       349 ~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y  401 (417)
T COG2223         349 AVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALY  401 (417)
T ss_pred             HHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888889999888999999988887 88899988888777777655443

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.19  E-value=7.2e-10  Score=107.00  Aligned_cols=161  Identities=16%  Similarity=0.122  Sum_probs=115.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH--HHH
Q 016902           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT--IYL  147 (380)
Q Consensus        70 ~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~--l~~  147 (380)
                      .++.+.+..++.....+++..+++.|+.+.+|++..+++.....+.++..++.++.|+++||+.+|++..+....  +..
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~  296 (379)
T TIGR00881       217 VLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALII  296 (379)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence            355555666666666777788899999999999999999999999999999999999999986344443322211  111


Q ss_pred             HHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhh
Q 016902          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (380)
Q Consensus       148 lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r  227 (380)
                      ++..++...       +.                   .+...+++..++.|+..++..+....+..|.+|++.      |
T Consensus       297 ~~~~~~~~~-------~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~  344 (379)
T TIGR00881       297 VSLLVYWLN-------PA-------------------ANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKA------A  344 (379)
T ss_pred             HHHHHHhcC-------cc-------------------hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcch------h
Confidence            221111110       00                   223334445555666555666666778899999887      9


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHH
Q 016902          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAF  262 (380)
Q Consensus       228 ~~~~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f  262 (380)
                      ++.+++++....+|..+++.+.+++.+..||++.|
T Consensus       345 g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f  379 (379)
T TIGR00881       345 GTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF  379 (379)
T ss_pred             HHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence            99999999999999999999999999999998754

>PRK10504 putative transporter; Provisional

Probab=99.18  E-value=3.6e-09  Score=106.56  Aligned_cols=156  Identities=10%  Similarity=-0.026  Sum_probs=116.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 016902           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (380)
Q Consensus        71 ~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~  150 (380)
                      ....+...++..+++.......+.|++..+|.+...++.......++..++.++.|+++||+ |||+++.++.++..++.
T Consensus       263 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~  341 (471)
T PRK10504        263 FSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-GYRRVLVATTLGLALVS  341 (471)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHH
Confidence            34444555555555544445567777778999999998888888888888888999999998 99999998888777776


Q ss_pred             HHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhH
Q 016902          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (380)
Q Consensus       151 ~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~  230 (380)
                      .++.....      .                   .....+.+..++.|++.+...+....+..+.+|++.      ++..
T Consensus       342 ~~~~~~~~------~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~  390 (471)
T PRK10504        342 LLFMLVAL------L-------------------GWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNL------ASSG  390 (471)
T ss_pred             HHHHhccc------c-------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHh------ccch
Confidence            65544210      0                   122333445566778888878888888889998776      8999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcchh
Q 016902          231 FNFFYLSVTVGAIVAFTLVVYIQMEHGW  258 (380)
Q Consensus       231 ~~~~~~~~~iG~~i~~~i~~~i~~~~gw  258 (380)
                      ++++++...+|..+|+.+.+.+.+..|+
T Consensus       391 ~~~~~~~~~~g~~ig~~i~g~ll~~~g~  418 (471)
T PRK10504        391 NSLLSMIMQLSMSIGVTIAGLLLGLFGQ  418 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999998887665554

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.18  E-value=1.5e-09  Score=104.36  Aligned_cols=153  Identities=9%  Similarity=0.005  Sum_probs=119.8

Q ss_pred             HHHHHHHHHHHHHHHHHHH-HhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 016902           71 ALFIFGNEMAERMAYFGLS-VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (380)
Q Consensus        71 ~~~i~~~~~~~~~~~~~i~-~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg  149 (380)
                      .+..+...++....+++.. ...+.|+++.+|.+..+.+.......++..++.++.++++|++ ||++.+.++.++..++
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~  290 (365)
T TIGR00900       212 LRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF-KRMALMTGAIFVIGLA  290 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHH
Confidence            3444444455555555555 5566777767999999999999999999999999999999997 9999888876666665


Q ss_pred             HHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhh
Q 016902          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (380)
Q Consensus       150 ~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~  229 (380)
                      ..++....                           .+...+++..++.|++.+...+...++..|.+|++.      |++
T Consensus       291 ~~~~~~~~---------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~  337 (365)
T TIGR00900       291 ILVVGLTP---------------------------PNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAEL------LGR  337 (365)
T ss_pred             HHHHHhhc---------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHH
Confidence            55544320                           124556777788899999888999999999999776      999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcch
Q 016902          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG  257 (380)
Q Consensus       230 ~~~~~~~~~~iG~~i~~~i~~~i~~~~g  257 (380)
                      .+++++...++|..+++.+.+++.+..|
T Consensus       338 ~~~~~~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       338 VFGAQFSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999987653

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.17  E-value=1.2e-09  Score=109.91  Aligned_cols=155  Identities=13%  Similarity=0.112  Sum_probs=123.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 016902           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (380)
Q Consensus        71 ~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~  150 (380)
                      .+...+..++..+.+++....++.|+++.+|++..+++.......++..++.++.|+++||+ |||+.+.++..+..++.
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~g~~~~~~~~  335 (485)
T TIGR00711       257 FTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI-DPRKLVTIGLILYAVGF  335 (485)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcHHHHHHHHHHHHHHH
Confidence            34445555666677777778899999999999999999999889999999999999999997 99999998888888777


Q ss_pred             HHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhH
Q 016902          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (380)
Q Consensus       151 ~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~  230 (380)
                      .++.+.     +.+.                   .+...++...++.|+|.+...+.......+.+|+++      ++.+
T Consensus       336 ~~~~~~-----~~~~-------------------~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~------~g~~  385 (485)
T TIGR00711       336 YWRAFT-----FTPD-------------------TPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHK------IARG  385 (485)
T ss_pred             HHHhcc-----CCCC-------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HhHH
Confidence            766532     0111                   234445566778899988887777777788888766      9999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcc
Q 016902          231 FNFFYLSVTVGAIVAFTLVVYIQMEH  256 (380)
Q Consensus       231 ~~~~~~~~~iG~~i~~~i~~~i~~~~  256 (380)
                      .+++++..++|+.+|+.+.+.+.++.
T Consensus       386 ~~~~~~~~~~g~~ig~~i~g~~~~~~  411 (485)
T TIGR00711       386 SSLSNFTRQLGGSIGTALITTILTNR  411 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999988887653

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.17  E-value=4.4e-09  Score=103.17  Aligned_cols=165  Identities=10%  Similarity=-0.024  Sum_probs=111.3

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhh
Q 016902           78 EMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCA  157 (380)
Q Consensus        78 ~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~  157 (380)
                      .++.....+...++++.|+.+.+|++....+...+...++..++.++.|+++||+ |+++.+.++..+..++.+++....
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~-~~~~~~~~~~~~~~i~~~~~~~~~  286 (382)
T PRK10091        208 TMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRY-SPLRIAAVTDFIIVLALLMLFFFG  286 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecccc-CchhHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444556677888888999999999999999999999999999999997 999999888887777765544321


Q ss_pred             hcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhcc-CCCCCchhhhhhhhHHHHHHH
Q 016902          158 TMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQ-FDERSKDYKTHLDRFFNFFYL  236 (380)
Q Consensus       158 ~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~-f~~~~~~~~~~r~~~~~~~~~  236 (380)
                                                 .+....++..++.++|.++..+.......+. .+.+.      ++..  ..+.
T Consensus       287 ---------------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~--~~~~  331 (382)
T PRK10091        287 ---------------------------GMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGEL------LGAA--GGQI  331 (382)
T ss_pred             ---------------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchH------HHHH--HHHH
Confidence                                       1122334444455555544444433333333 33222      3433  2355


Q ss_pred             HHHHHHHHHHHHHHHhhhc-chhhHHHHHHHHHHHHHHHHHHh
Q 016902          237 SVTVGAIVAFTLVVYIQME-HGWGSAFGALAIAMGISNMLFFI  278 (380)
Q Consensus       237 ~~~iG~~i~~~i~~~i~~~-~gw~~~f~i~~~~~~~~~i~~~~  278 (380)
                      ...+|..+||.+.+++.+. .+|++.+.+.++..++.+..+..
T Consensus       332 ~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (382)
T PRK10091        332 AFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLL  374 (382)
T ss_pred             HHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHH
Confidence            6789999999999998875 67999998877666655554433

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.15  E-value=6.9e-09  Score=101.76  Aligned_cols=165  Identities=6%  Similarity=-0.115  Sum_probs=120.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 016902           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (380)
Q Consensus        71 ~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~  150 (380)
                      .+..++..++....+.++.+.++.|+. +.|++....+...+....+..+..++.|++.||+ |+++.+.++.++..++.
T Consensus       207 ~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~l~~~~~~~~~~~  284 (382)
T PRK11128        207 VWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW-SARDLLLLSAICGVVRW  284 (382)
T ss_pred             HHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHH
Confidence            444444445445555566677788885 5899988888888877778888889999999998 99999998888877776


Q ss_pred             HHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhH
Q 016902          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (380)
Q Consensus       151 ~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~  230 (380)
                      +++...                            .+...+++..++.|++.+...+....+..++ ++++      +++.
T Consensus       285 ~~~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~------~~~~  329 (382)
T PRK11128        285 GLMGST----------------------------TALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSE------VIRL  329 (382)
T ss_pred             HHHHhh----------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhh------hHHH
Confidence            655442                            3455667777888888887777777777665 4333      5677


Q ss_pred             HHHHH-HHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHH
Q 016902          231 FNFFY-LSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISN  273 (380)
Q Consensus       231 ~~~~~-~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~  273 (380)
                      .+++. +...+|..+++.++|++.+..|+ ..|++.+++.++++
T Consensus       330 ~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~  372 (382)
T PRK11128        330 QALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPAL  372 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHH
Confidence            77765 55677888999999999998887 35555555544443

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.15  E-value=3e-09  Score=104.73  Aligned_cols=163  Identities=12%  Similarity=0.092  Sum_probs=119.6

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Q 016902           78 EMAERMAYFGLSVNMVTFMFYVM---HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGIT  154 (380)
Q Consensus        78 ~~~~~~~~~~i~~~l~~yl~~~~---~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~  154 (380)
                      .++....+......++.|+...+   +.+....+...++..+...++.++.|++.||+ |||+.+.++.+++.++.++..
T Consensus       224 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~-g~~~~l~~~~~l~~l~~~~~~  302 (396)
T TIGR00882       224 VVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI-GAKNALLIAGTIMSVRIIGSS  302 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHHHHH
Confidence            33333444444456778887665   44555667777777777777888999999998 999999998888887776654


Q ss_pred             hhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHH-
Q 016902          155 LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF-  233 (380)
Q Consensus       155 l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~-  233 (380)
                      ..                            .+...+++...+.+++..........+..+.++.+.      +++.+++ 
T Consensus       303 ~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~at~~~~~  348 (396)
T TIGR00882       303 FA----------------------------TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRL------SATIYLIG  348 (396)
T ss_pred             hc----------------------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcce------EEEeehHH
Confidence            42                            234455666777787776666666667778888766      6777766 


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHH
Q 016902          234 FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNML  275 (380)
Q Consensus       234 ~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~  275 (380)
                      +++...+|..+++.+++++.+..||+..|.+.+++.++..++
T Consensus       349 ~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~  390 (396)
T TIGR00882       349 FQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLI  390 (396)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            678899999999999999999999999998877776655544

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.15  E-value=4.1e-13  Score=134.27  Aligned_cols=136  Identities=20%  Similarity=0.233  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcch
Q 016902          106 DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSW  185 (380)
Q Consensus       106 ~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~  185 (380)
                      ..++..+.+.++..+|.+++|+++|++ |||++++++.++.++|.++..++...                         .
T Consensus        47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~-GRk~~~~~~~~~~~i~~~~~~~~~~~-------------------------~  100 (451)
T PF00083_consen   47 LSSLLTSSFFIGAIVGALIFGFLADRY-GRKPALIISALLMIIGSILIAFAPSY-------------------------N  100 (451)
T ss_pred             HHHHHHHHHHhhhcccccccccccccc-cccccccccccccccccccccccccc-------------------------c
Confidence            457888999999999999999999998 99999999999999999888775210                         1


Q ss_pred             hHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh---cchhhHHH
Q 016902          186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM---EHGWGSAF  262 (380)
Q Consensus       186 ~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~---~~gw~~~f  262 (380)
                      +...+.++|++.|+|.|+..+..+.++.|..|++.      |+....+++....+|..++..+...+..   +.+||+.+
T Consensus       101 ~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~  174 (451)
T PF00083_consen  101 NFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILL  174 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccc------ccccccccccccccccccccccccccccccccccccccc
Confidence            56778999999999999999999999999999888      8888888888888888777665543322   34599888


Q ss_pred             HHHHHHHHHHH
Q 016902          263 GALAIAMGISN  273 (380)
Q Consensus       263 ~i~~~~~~~~~  273 (380)
                      ++.++..++.+
T Consensus       175 ~~~~~~~l~~~  185 (451)
T PF00083_consen  175 IFGAIPSLLVL  185 (451)
T ss_pred             ccccccccccc
Confidence            87766654433

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.15  E-value=2.7e-09  Score=106.07  Aligned_cols=160  Identities=16%  Similarity=0.056  Sum_probs=115.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 016902           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (380)
Q Consensus        70 ~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg  149 (380)
                      ..+..++..++..++++......+.|++..++ +....+....+..++..++.+++++++||+ |||+++.++.++..++
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g~~~~~~~~~~~~~~~  300 (437)
T TIGR00792       223 QLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF-GRKILFAGGILLMVLG  300 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence            34455555566666665544444445544455 445566667777888888999999999998 9999999998888887


Q ss_pred             HHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCc-hhhhhhh
Q 016902          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK-DYKTHLD  228 (380)
Q Consensus       150 ~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~-~~~~~r~  228 (380)
                      .+++.+..                           .+...+++..++.+++.+...+...++.+|..|.++- ..++.++
T Consensus       301 ~~~~~~~~---------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  353 (437)
T TIGR00792       301 YLIFFFAG---------------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEG  353 (437)
T ss_pred             HHHHHHcc---------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchH
Confidence            76665420                           1334455666778889888888999999998874321 1122378


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Q 016902          229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGW  258 (380)
Q Consensus       229 ~~~~~~~~~~~iG~~i~~~i~~~i~~~~gw  258 (380)
                      .+++++++...+|..+++.+.+++.+..||
T Consensus       354 ~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~  383 (437)
T TIGR00792       354 LVYSVRTFVRKLGQALAGFLVGLILGIIGY  383 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            999999999999999999999998776665

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00895 2A0115 benzoate transport

Probab=99.15  E-value=2.1e-09  Score=104.57  Aligned_cols=149  Identities=14%  Similarity=0.024  Sum_probs=111.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 016902           68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL  147 (380)
Q Consensus        68 ~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~  147 (380)
                      ++..+...+..++....++++..+++ |+.+++|++...++.......++..++.+++|+++||+ ||++.+....+..+
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~  326 (398)
T TIGR00895       249 ARITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRL-GPRVTALLLLLGAV  326 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHH
Confidence            34444555555566666666666666 77788999999999999999999999999999999998 99854443333333


Q ss_pred             HHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhh
Q 016902          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (380)
Q Consensus       148 lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r  227 (380)
                      +..++....                            .+...+++..++.+++.++..+...++.+|.+|++.      |
T Consensus       327 ~~~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~  372 (398)
T TIGR00895       327 FAVLVGSTL----------------------------FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAI------R  372 (398)
T ss_pred             HHHHHHHHh----------------------------hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH------H
Confidence            222222211                            134445666778889988889999999999999777      9


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHh
Q 016902          228 DRFFNFFYLSVTVGAIVAFTLVVYI  252 (380)
Q Consensus       228 ~~~~~~~~~~~~iG~~i~~~i~~~i  252 (380)
                      +..+++++....+|..++|.+++++
T Consensus       373 g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       373 ATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            9999999999999999999998875

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.15  E-value=4.7e-10  Score=106.80  Aligned_cols=116  Identities=16%  Similarity=0.075  Sum_probs=101.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCC
Q 016902          103 SFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPA  182 (380)
Q Consensus       103 s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~  182 (380)
                      +..-++.+-+.|.++.++.++++|.+||+| |||++++++.+...+...+.+.+                          
T Consensus        66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-GRkpvll~c~~~va~s~ll~~~S--------------------------  118 (451)
T KOG2615|consen   66 SVFYAGFLGSSFSILQFISSPLWGCLSDRY-GRKPVLLACLIGVALSYLLWALS--------------------------  118 (451)
T ss_pred             cchhhhhHhhHHHHHHHHhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHH--------------------------
Confidence            345678888999999999999999999999 99999999999888887777765                          


Q ss_pred             cchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016902          183 KSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM  254 (380)
Q Consensus       183 ~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~  254 (380)
                        .+...+.++|++.|+..|- ...+-++++|.+++++      |+.+++....+..+|..+||.+++|+..
T Consensus       119 --~~F~afv~aR~l~Gi~kgn-l~v~rAiisdV~sek~------r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  119 --RNFAAFVLARFLGGIFKGN-LSVIRAIISDVVSEKY------RPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             --HHHHHHHHHHHhhhhccCc-hHHHHHHHHhhcChhh------ccceeeeeehhhhcchhhcchhhhHHHh
Confidence              4666777789999998765 4667899999999888      9999999999999999999999999976

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.14  E-value=6.1e-09  Score=104.90  Aligned_cols=154  Identities=9%  Similarity=-0.042  Sum_probs=106.3

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccccc
Q 016902           94 TFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRIS  173 (380)
Q Consensus        94 ~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~~~c~~~~  173 (380)
                      +++.+.+|++...+........+...++.+++|+++||+ |||+.++++.++..++++++.+...     ++        
T Consensus       295 p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g~r~~~i~~~~~~~v~~~~l~~~~~-----~~--------  360 (479)
T PRK10077        295 PEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFY-----TQ--------  360 (479)
T ss_pred             HHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHhHHHHHHHHHHHHHHHh-----cC--------
Confidence            445567888877666666667777888899999999998 9999999999988888877664311     00        


Q ss_pred             cccCCCCCCcchhHHHHHHHHHHHHHhccc-hhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHH--
Q 016902          174 QLLGSCEPAKSWQMLYLYTVLYITGFGAAG-IRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV--  250 (380)
Q Consensus       174 ~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~-~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~--  250 (380)
                                 ........+.++.+++.+. ..++...+.+|.+|++.      |++++++.+....+|..+++.+.+  
T Consensus       361 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~~g~~~~~~~~p~~  423 (479)
T PRK10077        361 -----------APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWIANYFVSWTFPMM  423 (479)
T ss_pred             -----------cccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhH------HHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence                       0111222333344444433 34677899999999877      999999988888777777755444  


Q ss_pred             ----HhhhcchhhHHHHHHHHHHHHHHHHHHh
Q 016902          251 ----YIQMEHGWGSAFGALAIAMGISNMLFFI  278 (380)
Q Consensus       251 ----~i~~~~gw~~~f~i~~~~~~~~~i~~~~  278 (380)
                          ++.+..+|++.|++.++..+++.++.+.
T Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  455 (479)
T PRK10077        424 DKNSWLVAHFHNGFSYWIYGCMGVLAALFMWK  455 (479)
T ss_pred             HhccchhhhccCccHHHHHHHHHHHHHHHHHh
Confidence                4456778888888776665555554433

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.13  E-value=1.6e-09  Score=110.23  Aligned_cols=169  Identities=15%  Similarity=0.101  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 016902           75 FGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSN------------AVNNFLGISQASSVLGGFLADAYLGRYWTIAIF  142 (380)
Q Consensus        75 ~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~------------~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~  142 (380)
                      ....++..+.+|++..+++.+++ +.|++...++.            ...+..++..++.+++++++||+ |||++++++
T Consensus       294 ~~~~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~-gRR~~l~~~  371 (502)
T TIGR00887       294 AGSWFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDII-GRKPIQLMG  371 (502)
T ss_pred             HHHHHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cchhHHHHH
Confidence            34445556778888777777775 67876432211            12223344555778889999998 999999888


Q ss_pred             HHHHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCch
Q 016902          143 TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD  222 (380)
Q Consensus       143 ~~l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~  222 (380)
                      .++..++.+++.+....  .  +                   .. ..+....++..++..+..+....+.+|.||.+.  
T Consensus       372 ~~~~~~~~~~l~~~~~~--~--~-------------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~--  425 (502)
T TIGR00887       372 FFILTVLFFVLGFAYNH--L--S-------------------TH-GFLAIYVLAQFFANFGPNATTFIVPGEVFPTRY--  425 (502)
T ss_pred             HHHHHHHHHHHHHHHHh--c--c-------------------hh-HHHHHHHHHHHHHhcCCCchhhhhhhccCchhH--
Confidence            87777666655543110  0  0                   11 111111112222223344566677899999988  


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhc----------chhhHHHHHHHHHHHHHHHH
Q 016902          223 YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME----------HGWGSAFGALAIAMGISNML  275 (380)
Q Consensus       223 ~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~----------~gw~~~f~i~~~~~~~~~i~  275 (380)
                          |+.+.++.+....+|+++++.+.+++.+.          .++...|++.+++.+++.++
T Consensus       426 ----R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~  484 (502)
T TIGR00887       426 ----RSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF  484 (502)
T ss_pred             ----HHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH
Confidence                99999999999999999999999998763          34455667666666555443

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.13  E-value=1.2e-08  Score=99.24  Aligned_cols=157  Identities=13%  Similarity=0.100  Sum_probs=110.0

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHh
Q 016902           76 GNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITL  155 (380)
Q Consensus        76 ~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l  155 (380)
                      +...+....+++...+.+.|+.+.+|++..+.+.+.....++..++.+++|+++||+ |||+.+.++..+..++.+++..
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~-~~~~~~~~~~~~~~~~~~~~~~  291 (385)
T TIGR00710       213 LIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKW-GAKSLLRMGLILFAVSAVLLEI  291 (385)
T ss_pred             HHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHH
Confidence            333344455556666778888889999999999988888899999999999999997 9999998888777777666654


Q ss_pred             hhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHH
Q 016902          156 CATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY  235 (380)
Q Consensus       156 ~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~  235 (380)
                      ....    +.                   .....+++...+.++|.+...+.......|.+| +.      +++..++++
T Consensus       292 ~~~~----~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~g~~~~~~~  341 (385)
T TIGR00710       292 TAIL----GL-------------------GSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HV------AGTASALFG  341 (385)
T ss_pred             HHHh----cc-------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-cc------chHHHHHHH
Confidence            3210    00                   123344555667888888888888888888776 33      788888877


Q ss_pred             HHHHH-HHHHHHHHHHHhhhcchhhHHHHH
Q 016902          236 LSVTV-GAIVAFTLVVYIQMEHGWGSAFGA  264 (380)
Q Consensus       236 ~~~~i-G~~i~~~i~~~i~~~~gw~~~f~i  264 (380)
                      ..... |+..++. .+.+.++.+|...+..
T Consensus       342 ~~~~~~g~i~~~~-~~~~~~~~~~~~~~~~  370 (385)
T TIGR00710       342 TLRLVLGAIVGYL-VSLIHGNTAWPMSLSC  370 (385)
T ss_pred             HHHHHHHHHHHHH-HHhccccChHHHHHHH
Confidence            66655 4444444 4556555555544443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10133 L-fucose transporter; Provisional

Probab=99.13  E-value=5.5e-09  Score=104.67  Aligned_cols=162  Identities=10%  Similarity=0.034  Sum_probs=118.6

Q ss_pred             HHHHHHHHHHHHHHHhHHHHH-HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Q 016902           76 GNEMAERMAYFGLSVNMVTFM-FYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGIT  154 (380)
Q Consensus        76 ~~~~~~~~~~~~i~~~l~~yl-~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~  154 (380)
                      +..++.....++...+++.|+ ++.+|++...++.....+.++..++.+++|+++||+ ||++++.++.++..+++.+..
T Consensus       265 l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~-g~~~~l~~~~~~~~~~~~~~~  343 (438)
T PRK10133        265 LAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMALCLISA  343 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHH
Confidence            334444555566667788886 567899999999999999999999999999999997 999999888777666554443


Q ss_pred             hhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHH
Q 016902          155 LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF  234 (380)
Q Consensus       155 l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~  234 (380)
                      +.                            .+. ..+.+..+.++|.+.+.|+..+...+.++++..     .++.+.  
T Consensus       344 ~~----------------------------~~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~~~-----~as~l~--  387 (438)
T PRK10133        344 FA----------------------------GGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQDTK-----YGSSFI--  387 (438)
T ss_pred             Hc----------------------------CCh-HHHHHHHHHHHHHHHHHHHHHHHHHcccchhhc-----cchhHH--
Confidence            32                            011 124556778999999999999999999875321     233332  


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcch-hhHHHHHHHHHHHHHHHH
Q 016902          235 YLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNML  275 (380)
Q Consensus       235 ~~~~~iG~~i~~~i~~~i~~~~g-w~~~f~i~~~~~~~~~i~  275 (380)
                      .. ..+|+.+++.+.+++.+..| -+..|+++.++.++.++.
T Consensus       388 ~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~~  428 (438)
T PRK10133        388 VM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF  428 (438)
T ss_pred             hH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence            22 33577788888899988887 788888777766554443

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.12  E-value=1e-08  Score=100.71  Aligned_cols=171  Identities=6%  Similarity=-0.090  Sum_probs=115.7

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 016902           74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFL-GISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG  152 (380)
Q Consensus        74 i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~-~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~  152 (380)
                      .+...++...+.....++.+.|+.+ .|++..+.+.+..... ....++.+++|+++||+ |+++.+.++.++..+..+.
T Consensus       213 ~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~~~~~  290 (390)
T TIGR02718       213 LLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-GLWRTFILGVGLAGSLALL  290 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHH
Confidence            3334445555555566667778864 7999999998877765 45566788999999998 9999988877665333222


Q ss_pred             HHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCC-CCchhhhhhhhHH
Q 016902          153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE-RSKDYKTHLDRFF  231 (380)
Q Consensus       153 l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~-~~~~~~~~r~~~~  231 (380)
                      ...... ... .                    .....++....+.+++.|...+...+...+..++ +.      +++.+
T Consensus       291 ~~~~~~-~~~-~--------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~g~~~  342 (390)
T TIGR02718       291 WFAQAA-FWL-A--------------------PGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQ------AGTDV  342 (390)
T ss_pred             HHHHHH-ccc-C--------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc------hHHHH
Confidence            221110 000 0                    1122233333444555666666666776666665 44      89999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHH
Q 016902          232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM  274 (380)
Q Consensus       232 ~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i  274 (380)
                      ++++...++|..+++.+++++.+..||+..|.+.+++.+++++
T Consensus       343 ~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       343 TAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999988999888877766655543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.11  E-value=7.3e-09  Score=104.74  Aligned_cols=179  Identities=9%  Similarity=0.005  Sum_probs=117.6

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhcchh-HHHHHHHHHHHHH
Q 016902           75 FGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLAD----AYLGRY-WTIAIFTTIYLAG  149 (380)
Q Consensus        75 ~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD----~~~GR~-~~i~i~~~l~~lg  149 (380)
                      .+..+..++.+..+..+++.|+++.+|++...++.+..+.-+.-.+..++.|+++|    || ||| +.++++.+...++
T Consensus        12 g~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~-Grrrp~il~g~i~~~i~   90 (473)
T PRK10429         12 GFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRW-GKFKPWILIGTLANSVV   90 (473)
T ss_pred             ccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCC-CCcchhHhhhhHHHHHH
Confidence            34455566777777788999999999999999999999999999999999999999    65 995 5555666666666


Q ss_pred             HHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhh
Q 016902          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (380)
Q Consensus       150 ~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~  229 (380)
                      ++++...   |.+ +                  .......+++...+..++......+..++++|+.++.+  |   |.+
T Consensus        91 ~~llf~~---p~~-~------------------~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~--e---R~~  143 (473)
T PRK10429         91 LFLLFSA---HLF-E------------------GTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKR--E---REQ  143 (473)
T ss_pred             HHHHHcC---CCC-C------------------ccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHH--H---HHH
Confidence            5555431   111 0                  01233444445556677777788888899999885422  2   788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhh-------cchhhHHHHHHHHHHHHHHHHHHhhcc
Q 016902          230 FFNFFYLSVTVGAIVAFTLVVYIQM-------EHGWGSAFGALAIAMGISNMLFFIGTP  281 (380)
Q Consensus       230 ~~~~~~~~~~iG~~i~~~i~~~i~~-------~~gw~~~f~i~~~~~~~~~i~~~~~~~  281 (380)
                      .+++-.+..++|+.+.+.+...+..       ..+|++...+.+++.++..++.+...|
T Consensus       144 l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~  202 (473)
T PRK10429        144 LVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVH  202 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCce
Confidence            7777566666665555444332211       124666666655555554444444333

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.10  E-value=3.7e-09  Score=107.54  Aligned_cols=153  Identities=13%  Similarity=0.055  Sum_probs=122.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 016902           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (380)
Q Consensus        71 ~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~  150 (380)
                      .....+..++..+.+++...+++.|++..+|++..+++.....+.++..++.+++|+++||+ |||+.+..+.++..++.
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~g~~~~~~~~  339 (495)
T PRK14995        261 ILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRL-GLRLVATGGMALSALSF  339 (495)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHH
Confidence            44445556666667777778889999999999999999999999999999999999999998 99999888888887777


Q ss_pred             HHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhH
Q 016902          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (380)
Q Consensus       151 ~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~  230 (380)
                      +++.....      .                   .+....++..++.|+|.|...+.......+..|+++      ++..
T Consensus       340 ~~l~~~~~------~-------------------~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~g~~  388 (495)
T PRK14995        340 YGLAMTDF------S-------------------TQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEK------AAAA  388 (495)
T ss_pred             HHHHHhcC------C-------------------CchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHh------cchH
Confidence            66544210      0                   123344566778899998888888888888888776      8999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhc
Q 016902          231 FNFFYLSVTVGAIVAFTLVVYIQME  255 (380)
Q Consensus       231 ~~~~~~~~~iG~~i~~~i~~~i~~~  255 (380)
                      .+++++..++|..+|+.+.+.+.++
T Consensus       389 ~~~~~~~~~lG~~~G~ai~g~i~~~  413 (495)
T PRK14995        389 GAIETMAYELGAGLGIAIFGLLLSR  413 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998887653

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.10  E-value=5.4e-09  Score=116.48  Aligned_cols=160  Identities=11%  Similarity=-0.014  Sum_probs=122.1

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 016902           74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFA-DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG  152 (380)
Q Consensus        74 i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~-~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~  152 (380)
                      .++..++..+..+.+..+++.|+.+.+|++.. ..+++.+...++..++.+++|+++|++ ++++.+.++.++..++.++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~  315 (1146)
T PRK08633        237 AIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH-IELGLVPLGALGLALSLFL  315 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eEccchhHHHHHHHHHHHH
Confidence            33333444444555667789999999999988 888898889999999999999999997 9998888887777776666


Q ss_pred             HHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHH
Q 016902          153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN  232 (380)
Q Consensus       153 l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~  232 (380)
                      +.+.                            .+...++++.++.|++.++..+...+++.+.+|++.      |+++++
T Consensus       316 ~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------rg~~~~  361 (1146)
T PRK08633        316 LPTA----------------------------PSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKE------LGKVLA  361 (1146)
T ss_pred             HHHh----------------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccc------hhhhhH
Confidence            5543                            234556667788889988888888999999999888      999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhh-cchhhHHHHHHHHH
Q 016902          233 FFYLSVTVGAIVAFTLVVYIQM-EHGWGSAFGALAIA  268 (380)
Q Consensus       233 ~~~~~~~iG~~i~~~i~~~i~~-~~gw~~~f~i~~~~  268 (380)
                      ++++..++|.++++.+++.+.. ..++...|++.+++
T Consensus       362 ~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~  398 (1146)
T PRK08633        362 ANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALV  398 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            9999999998888777666543 23455555544443

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.09  E-value=1.2e-08  Score=102.04  Aligned_cols=183  Identities=14%  Similarity=0.024  Sum_probs=123.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 016902           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (380)
Q Consensus        71 ~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~  150 (380)
                      .|.+.+..++....|.++..+++.|+++.+.  .........+..+...++.+++|+||||+ |++++++++.++..++.
T Consensus       254 ~Wllslly~~tFG~fvg~s~~lp~~~~~~~~--~~~~l~~~~l~~l~~~l~rplgG~LADRi-G~~~vl~~~~i~~~i~~  330 (462)
T PRK15034        254 LWLLSLLYLATFGSFIGFSAGFAMLAKTQFP--DVNILRLAFFGPFIGAIARSVGGAISDKF-GGVRVTLINFIFMAIFS  330 (462)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHhhHHHHHhc-CchHHHHHHHHHHHHHH
Confidence            5667777777666777777788999887663  33333334455677888889999999997 99999999988777766


Q ss_pred             HHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCC----------C
Q 016902          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER----------S  220 (380)
Q Consensus       151 ~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~----------~  220 (380)
                      .++.+..      |.                ....+...+.++.+.+.++.|...+.+..++.+.||++          +
T Consensus       331 ~~~~l~l------p~----------------~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~  388 (462)
T PRK15034        331 ALLFLTL------PG----------------TGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGS  388 (462)
T ss_pred             HHHHHHh------cc----------------ccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccc
Confidence            5443321      11                00134555555555555666666666777777777630          0


Q ss_pred             -----chhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcch-hhHHHHHHHHHHHHHHHHHHh
Q 016902          221 -----KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFI  278 (380)
Q Consensus       221 -----~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g-w~~~f~i~~~~~~~~~i~~~~  278 (380)
                           ...+++-+...++......+|+++-|.+.++..+..| +..+|++..+..++++++.+.
T Consensus       389 ~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~  452 (462)
T PRK15034        389 DEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWL  452 (462)
T ss_pred             hhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Confidence                 1112346778888888888988898988777766554 888888888877777666544

>TIGR00889 2A0110 nucleoside transporter

Probab=99.08  E-value=1.9e-08  Score=100.06  Aligned_cols=160  Identities=14%  Similarity=0.005  Sum_probs=104.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-hHHHHHHHHHHHHHHH
Q 016902           73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGR-YWTIAIFTTIYLAGLT  151 (380)
Q Consensus        73 ~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR-~~~i~i~~~l~~lg~~  151 (380)
                      .+.+..++...++-...+.++.|+++++|++..+.+++.+.+.++..++++++|.++||+ || |+++.++.++..++..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~-g~~r~~~~~~~~~~~~~~~   84 (418)
T TIGR00889         6 KLKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKW-LSAQKVYAVCHFAGALLLF   84 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHH
Confidence            344555555555555668899999999999999999999999999999999999999997 65 7777777776666555


Q ss_pred             HHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhh--------ccCCCCCchh
Q 016902          152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGA--------DQFDERSKDY  223 (380)
Q Consensus       152 ~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~a--------d~f~~~~~~~  223 (380)
                      +..+.                            .+...+++.+.+.+++.+...+...+...        |......   
T Consensus        85 ~~~~~----------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~---  133 (418)
T TIGR00889        85 FAAQV----------------------------TTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFP---  133 (418)
T ss_pred             HHHHh----------------------------cCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCC---
Confidence            54442                            23455566666777766555544433321        2111111   


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHH
Q 016902          224 KTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM  274 (380)
Q Consensus       224 ~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i  274 (380)
                         |.+.++      .+|..+++.+++++.....|. .|++.+++.++..+
T Consensus       134 ---~~r~~G------~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~  174 (418)
T TIGR00889       134 ---PIRVMG------TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGV  174 (418)
T ss_pred             ---Ceeeeh------hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHH
Confidence               333332      367788888888774333344 35555554444443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK11462 putative transporter; Provisional

Probab=99.07  E-value=2.4e-08  Score=100.68  Aligned_cols=208  Identities=10%  Similarity=0.043  Sum_probs=134.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cchhHHHH-HHHHHHH
Q 016902           72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWTIA-IFTTIYL  147 (380)
Q Consensus        72 ~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~---~GR~~~i~-i~~~l~~  147 (380)
                      +.-.+..+..++.+..+..++..|.++.+|++...++.+..+.-+.-.+.-++.|.++||.   +||||..+ ++.+...
T Consensus        12 ~~Yg~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~   91 (460)
T PRK11462         12 IGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFG   91 (460)
T ss_pred             HhhccchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHH
Confidence            3333455555666666777899999999999999999999999999999999999999963   59976555 4556666


Q ss_pred             HHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhh
Q 016902          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (380)
Q Consensus       148 lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r  227 (380)
                      ++.+++...   |...+                   ......+++...+..++......+..++.+|+.++.+  |   |
T Consensus        92 i~~~llf~~---p~~s~-------------------~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~--e---R  144 (460)
T PRK11462         92 IVCVLAYST---PDLSM-------------------NGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPT--Q---R  144 (460)
T ss_pred             HHHHHHHhC---CCCCc-------------------chHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHH--H---H
Confidence            666555432   11100                   1234445555556677888888888899999987533  2   8


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhc-------chhhHHHHHHHHHHHHHHHHHHhhcccccccCCCCCccchHHHHH
Q 016902          228 DRFFNFFYLSVTVGAIVAFTLVVYIQME-------HGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVL  300 (380)
Q Consensus       228 ~~~~~~~~~~~~iG~~i~~~i~~~i~~~-------~gw~~~f~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~  300 (380)
                      .+..++..+..++|..+++.+...+...       .||.....+.+++..++.++.+...++..+.+++..+   +.+.+
T Consensus       145 t~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~~~~~~~~~~---~~~~l  221 (460)
T PRK11462        145 ISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKERVEAPPTTTS---MREDL  221 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcceeccCCCccCCC---HHHHH
Confidence            8899998888888877776665443322       2566666665555555544444433332222211122   44455


Q ss_pred             HHHHhhccc
Q 016902          301 VAAFRKRHA  309 (380)
Q Consensus       301 ~~a~~~r~~  309 (380)
                      ...+|||..
T Consensus       222 ~~~~~Nk~~  230 (460)
T PRK11462        222 RDIWQNDQW  230 (460)
T ss_pred             HHHhCChHH
Confidence            555565543

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.07  E-value=3.5e-08  Score=97.45  Aligned_cols=153  Identities=15%  Similarity=0.209  Sum_probs=101.6

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcc
Q 016902           91 NMVTFMFYVMHKSFADSSNAVNNF-LGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC  169 (380)
Q Consensus        91 ~l~~yl~~~~~~s~~~a~~~~~~~-~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~~~c  169 (380)
                      +.+.|+.+++|++..+.+.+.... .++..++.+++|+++||+ ||++.+.++.++..+..+.+.+.+..    +     
T Consensus       231 ~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~-g~~~~l~~~~~~~~l~~l~~~~~~~~----~-----  300 (402)
T PRK11902        231 LSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL-GLYRSLMLFGVLQAVSNLGYWVLAVT----P-----  300 (402)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHhc----C-----
Confidence            345577778999998888877654 445788899999999998 99998877776665554443322110    0     


Q ss_pred             cccccccCCCCCCcchhHHHHHHHH----HHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHH
Q 016902          170 DRISQLLGSCEPAKSWQMLYLYTVL----YITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA  245 (380)
Q Consensus       170 ~~~~~~~~~c~~~~~~~~~~l~~~l----~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~  245 (380)
                                     .+...++++.    ++.+++.+...+....+..+.+|.++      .    +++.....+|..++
T Consensus       301 ---------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~----~~~~~~~~l~~~~~  355 (402)
T PRK11902        301 ---------------KHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ------Y----ALLSALASVGRVYV  355 (402)
T ss_pred             ---------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH------H----HHHHHHHHHHHHHH
Confidence                           1223333333    34556666667777777777776433      3    33333445666655


Q ss_pred             HHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHh
Q 016902          246 FTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (380)
Q Consensus       246 ~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~~  278 (380)
                      ..+++++.+..||+..|.+.+++.++++++.+.
T Consensus       356 ~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~  388 (402)
T PRK11902        356 GPTSGYLVEAYGWPGFYLMTVVIALPGLALLWL  388 (402)
T ss_pred             HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence            668899999999999999888877776655433

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.06  E-value=5.8e-09  Score=101.01  Aligned_cols=166  Identities=14%  Similarity=0.098  Sum_probs=132.6

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhh
Q 016902           77 NEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLC  156 (380)
Q Consensus        77 ~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~  156 (380)
                      ..++-+=...++.+....|...++|++..+...+....+..+.++++++|+|.||+ |-|+++.++.+++.+..+.....
T Consensus       260 A~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rf-g~k~vl~~~lvi~~~~~~~~~~~  338 (438)
T COG2270         260 ARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERF-GSKPVLMIGLVILSIAALYLIFL  338 (438)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCceeehHHHHHHHHHHHHHHHc
Confidence            33333333345667778899999999999999999999999999999999999997 99999999988877766555442


Q ss_pred             hhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHH
Q 016902          157 ATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL  236 (380)
Q Consensus       157 ~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~  236 (380)
                                                  .....+++.-.++|+..|+.++..=++.+...|+++      -+.+|++|.+
T Consensus       339 ----------------------------~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k------~~~fFglyal  384 (438)
T COG2270         339 ----------------------------EGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGK------EGRFFGLYAL  384 (438)
T ss_pred             ----------------------------cccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc------ccceeehhhh
Confidence                                        122334555567899999999999999999999887      7999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcch-hhHHHHHHHHHHHHHHHHHH
Q 016902          237 SVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFF  277 (380)
Q Consensus       237 ~~~iG~~i~~~i~~~i~~~~g-w~~~f~i~~~~~~~~~i~~~  277 (380)
                      ....++++||...+.+.+..| -|.++....++..+++++++
T Consensus       385 tgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~  426 (438)
T COG2270         385 TGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLL  426 (438)
T ss_pred             hhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEE
Confidence            999999999999998877665 67777766666666665543

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.05  E-value=1.8e-08  Score=102.80  Aligned_cols=165  Identities=10%  Similarity=0.044  Sum_probs=133.7

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhh
Q 016902           78 EMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCA  157 (380)
Q Consensus        78 ~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~  157 (380)
                      .++..+....+...+|.+..+.+|.+....+.+.+.+.++..++.++.+.+.+++ ++.+.+..+.+++.++++.++++ 
T Consensus       227 ~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~-~~~~lv~~~~~~~a~~~~~lal~-  304 (524)
T PF05977_consen  227 SFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRL-SSRRLVLLASLLFALALLLLALS-  304 (524)
T ss_pred             HHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CcchhhHHHHHHHHHHHHHHhcc-
Confidence            3333344444555678888889999999999999999999999999999999987 99898888888887777776664 


Q ss_pred             hcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHH
Q 016902          158 TMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLS  237 (380)
Q Consensus       158 ~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~  237 (380)
                                                 .+....++++++.|++.........+..-...|++.      ||+.+++|+..
T Consensus       305 ---------------------------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~------~GRv~si~~~~  351 (524)
T PF05977_consen  305 ---------------------------PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWV------RGRVFSIYQMV  351 (524)
T ss_pred             ---------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HhHHHHHHHHH
Confidence                                       345666777788888888877778888888888777      99999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHH
Q 016902          238 VTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF  277 (380)
Q Consensus       238 ~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~  277 (380)
                      ...+..+|..+.|++.+.+|-+..+.+.+++++++.++..
T Consensus       352 ~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~  391 (524)
T PF05977_consen  352 FFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL  391 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999988888877776666555543

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.04  E-value=5.9e-08  Score=95.75  Aligned_cols=165  Identities=10%  Similarity=-0.001  Sum_probs=111.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 016902           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (380)
Q Consensus        71 ~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~  150 (380)
                      ++..+...++.....++..+++++++.+++|++....+.....+.++..++.++.+++.||. +|+ .++++.++..+..
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~-~~~-~l~~~~~~~~~~~  295 (394)
T PRK10213        218 VMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS-VKL-ALAGAPLVLAVSA  295 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc-chh-HHHHHHHHHHHHH
Confidence            34333344444455555556665555568899998889888888888999999999999985 544 4333433333332


Q ss_pred             HHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhH
Q 016902          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (380)
Q Consensus       151 ~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~  230 (380)
                      .++....                           .+...+++..++.|++.+...+...+++.+..|++       .+..
T Consensus       296 ~~l~~~~---------------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~-------~~~~  341 (394)
T PRK10213        296 LVLTLWG---------------------------SDKIVATGVAIIWGLTFALVPVGWSTWITRSLADQ-------AEKA  341 (394)
T ss_pred             HHHHHHh---------------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCccc-------HHHH
Confidence            2222210                           13445556677788888888888888888877632       3455


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHH
Q 016902          231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGI  271 (380)
Q Consensus       231 ~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~  271 (380)
                      .++++...++|..+|+.++|++.+..|+...+...+++.++
T Consensus       342 ~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~  382 (394)
T PRK10213        342 GSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLL  382 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHH
Confidence            56666677889999999999999988888777776554433

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.04  E-value=2.8e-09  Score=108.27  Aligned_cols=174  Identities=15%  Similarity=0.083  Sum_probs=139.6

Q ss_pred             HHHHHHHHHHHHHHHHHHH---hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 016902           72 LFIFGNEMAERMAYFGLSV---NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA  148 (380)
Q Consensus        72 ~~i~~~~~~~~~~~~~i~~---~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~l  148 (380)
                      |.+.+..|+.++..+|+..   .+...++++++.+..+.+++.++..++..+..++.+.+.||| |.|.+++++.++..+
T Consensus        45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-g~R~v~i~G~~v~~~  123 (509)
T KOG2504|consen   45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-GCRTVMIAGGLVAAL  123 (509)
T ss_pred             eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-CchHHHHHHHHHHHH
Confidence            5566666666666666443   245667889999999999999999999999999999999998 999999999999999


Q ss_pred             HHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHH-HHHHHhccchhhhhhhHhhccCCCCCchhhhhh
Q 016902          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVL-YITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (380)
Q Consensus       149 g~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l-~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r  227 (380)
                      |+++..++                            .+.+.+++.. ++.|+|.|.........+...|+.+       |
T Consensus       124 g~~lssF~----------------------------~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kk-------R  168 (509)
T KOG2504|consen  124 GLLLSSFA----------------------------TSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKK-------R  168 (509)
T ss_pred             HHHHHHHH----------------------------hhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHH-------H
Confidence            99988876                            3566666666 6789999999888888888777632       7


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHhhcc
Q 016902          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP  281 (380)
Q Consensus       228 ~~~~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~~~~~  281 (380)
                      +.+.++-..+..+|..+-|.+..++.+++|||+.+++...+++-.++.-...+|
T Consensus       169 ~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp  222 (509)
T KOG2504|consen  169 ALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRP  222 (509)
T ss_pred             HHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence            777777777788888888888899999999999999887777555554444444

>PRK09848 glucuronide transporter; Provisional

Probab=99.03  E-value=1.9e-08  Score=100.86  Aligned_cols=161  Identities=14%  Similarity=0.109  Sum_probs=115.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 016902           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (380)
Q Consensus        71 ~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~  150 (380)
                      +....+..++...+++......+.|++..+|.+....+.......++..++.++.++++||+ |+|+++.++.++..++.
T Consensus       230 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~-g~~~~~~~g~~~~~i~~  308 (448)
T PRK09848        230 LFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI-GKKNTFLIGALLGTCGY  308 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHH
Confidence            44455555555566665656666777778888766555544444566677888999999998 99999999998888887


Q ss_pred             HHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCch-hhhhhhh
Q 016902          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD-YKTHLDR  229 (380)
Q Consensus       151 ~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~-~~~~r~~  229 (380)
                      +++.+.       +.                   .+...+++..++.++|.+...+...++.+|..|.++-+ .++..+.
T Consensus       309 ~~~~~~-------~~-------------------~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~  362 (448)
T PRK09848        309 LLFFWV-------SV-------------------WSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGL  362 (448)
T ss_pred             HHHHHc-------Cc-------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhH
Confidence            766542       10                   23455666777889999999999999999988754311 1123588


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcchh
Q 016902          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGW  258 (380)
Q Consensus       230 ~~~~~~~~~~iG~~i~~~i~~~i~~~~gw  258 (380)
                      +++.+.+...+|..+++.+.+++.+..||
T Consensus       363 ~~~~~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        363 TYSLFSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            88899999999999999888877554443

>TIGR00896 CynX cyanate transporter

Probab=99.03  E-value=1.6e-08  Score=97.94  Aligned_cols=152  Identities=15%  Similarity=0.083  Sum_probs=112.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 016902           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (380)
Q Consensus        71 ~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~  150 (380)
                      .+.+.+..++....++++..+++.|+++ +|++....+...+.+.++..++.++.|+++||+-+||+++.++.++..++.
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~  277 (355)
T TIGR00896       199 AWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGL  277 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Confidence            4444445555667777788888999874 799999999999999999999999999999997345667777777777776


Q ss_pred             HHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhH
Q 016902          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (380)
Q Consensus       151 ~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~  230 (380)
                      +++....                           .+...  ...++.|+|.|...+...+...+..++++     +++..
T Consensus       278 ~~~~~~~---------------------------~~~~~--~~~~l~g~~~g~~~~~~~~~~~~~~~~~~-----~~g~~  323 (355)
T TIGR00896       278 CGLLFAP---------------------------MHGLW--AWALVLGLGQGGAFPLALTLIGLRSRQAA-----QAAAL  323 (355)
T ss_pred             HHHHHhh---------------------------hhHHH--HHHHHHHHhhhhHhHHHHHHHHHhccCHH-----HHHHH
Confidence            6555421                           11111  13456788888888877777766655322     16777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcch
Q 016902          231 FNFFYLSVTVGAIVAFTLVVYIQMEHG  257 (380)
Q Consensus       231 ~~~~~~~~~iG~~i~~~i~~~i~~~~g  257 (380)
                      +++.+....+|..++|.+.+++.+..|
T Consensus       324 ~~~~~~~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       324 SAMAQSIGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            888787888888999999999988765

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK10054 putative transporter; Provisional

Probab=99.03  E-value=1.2e-08  Score=100.68  Aligned_cols=171  Identities=12%  Similarity=-0.004  Sum_probs=118.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 016902           72 LFIFGNEMAERMAYFGLSVNMVTFMFYV--MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (380)
Q Consensus        72 ~~i~~~~~~~~~~~~~i~~~l~~yl~~~--~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg  149 (380)
                      +...+..++..+.+.....+++.|+...  .+.+....+.......+.......+.|.+.|++ |+|+.+.++.++..++
T Consensus       209 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~l~~~~~~~~~~  287 (395)
T PRK10054        209 LWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAA-NIRPLMTAGTLCFVIG  287 (395)
T ss_pred             hHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccC-CchhHHHHHHHHHHHH
Confidence            3333444444444444445666676543  344444555666666555556667788999997 9999998888888887


Q ss_pred             HHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhh
Q 016902          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (380)
Q Consensus       150 ~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~  229 (380)
                      .+++.+..                           .+...++++..+.++|.+...+....++.+..|++.      +++
T Consensus       288 ~~~~~~~~---------------------------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~------~~~  334 (395)
T PRK10054        288 LVGFIFSG---------------------------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGM------KAS  334 (395)
T ss_pred             HHHHHHcc---------------------------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCccc------cee
Confidence            76665421                           134445566778888888777888888899888776      788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHH
Q 016902          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF  277 (380)
Q Consensus       230 ~~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~  277 (380)
                      +++.+. ...+|..+||.+++++.+..|....|++.+++..++.++..
T Consensus       335 ~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~  381 (395)
T PRK10054        335 YFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML  381 (395)
T ss_pred             hHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence            887654 55689999999999999999988888876666555554443

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.02  E-value=2.2e-08  Score=99.00  Aligned_cols=154  Identities=11%  Similarity=0.028  Sum_probs=104.8

Q ss_pred             HHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCCC
Q 016902           88 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD  167 (380)
Q Consensus        88 i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~~  167 (380)
                      +...++.|+++..+ +....+...+...++...+....+.+.|+.++.++.+..+.++..++.+++...           
T Consensus       227 ~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~-----------  294 (400)
T PRK11646        227 VMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV-----------  294 (400)
T ss_pred             HHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh-----------
Confidence            44567788876656 556666666665555544444456666654476667777777777776655543           


Q ss_pred             cccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHH
Q 016902          168 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT  247 (380)
Q Consensus       168 ~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~  247 (380)
                                       .+...+++...+.++|.+...+...++..+..|++.      |++.++++++...+|..+||.
T Consensus       295 -----------------~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~ig~~  351 (400)
T PRK11646        295 -----------------SNLQQLFTLICLFYIGSIIAEPARETLSASLADARA------RGSYMGFSRLGLALGGAIGYI  351 (400)
T ss_pred             -----------------hhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCccc------chhhhhHHHHHHHHHHHhccc
Confidence                             223444555566777877777888899999999877      999999999999999999999


Q ss_pred             HHHHhhhcc---h-hhHHHHHHHHHHHHHHHHH
Q 016902          248 LVVYIQMEH---G-WGSAFGALAIAMGISNMLF  276 (380)
Q Consensus       248 i~~~i~~~~---g-w~~~f~i~~~~~~~~~i~~  276 (380)
                      +.+++.+..   + ....|++..++.+++.+.+
T Consensus       352 l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (400)
T PRK11646        352 GGGWLFDLGKALNQPELPWMMLGIIGLITLLAL  384 (400)
T ss_pred             chHHHHHHHhhcCCcchHHHHHHHHHHHHHHHH
Confidence            999998764   2 2445555444444444443

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.01  E-value=6.9e-08  Score=94.81  Aligned_cols=177  Identities=11%  Similarity=-0.024  Sum_probs=112.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHH--HHHHHHHHHHHH-HHHHHHHHhhcchhHHHHHHHHHHH
Q 016902           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNA--VNNFLGISQASS-VLGGFLADAYLGRYWTIAIFTTIYL  147 (380)
Q Consensus        71 ~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~--~~~~~~~~~~~~-l~~g~lsD~~~GR~~~i~i~~~l~~  147 (380)
                      ...+....+.+.+.+..+...++.|++ +.|++..+.+..  .........+.. ++.++++||+ ||||.+++...+..
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~-~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~-g~r~~~i~~~~~~~   80 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLR-EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRL-GRRRSWVLPMQCLV   80 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-CcchhHHHHHHHHH
Confidence            445556677777777666677777775 669999998886  344444444444 4446688886 99998766653322


Q ss_pred             H-HHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhh
Q 016902          148 A-GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (380)
Q Consensus       148 l-g~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~  226 (380)
                      . ....+...  .+.  .                    .....+....++.++..+...+..-++..|..+++.      
T Consensus        81 ~~~~~~~~~~--~~~--~--------------------~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~------  130 (390)
T TIGR02718        81 SACLASLALV--GPD--V--------------------AGAGWAVGLLACASLASATQDIATDGMAAEHFNGRT------  130 (390)
T ss_pred             HHHHHHHHcC--Ccc--h--------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------
Confidence            2 12222211  000  0                    112233333444555666666666666666666544      


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHhh
Q 016902          227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG  279 (380)
Q Consensus       227 r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~~~  279 (380)
                      ++.+.+.+.++..+|..++..+.+++.+..||+..|++.+++.++..+..+..
T Consensus       131 ~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~  183 (390)
T TIGR02718       131 LAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWL  183 (390)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc
Confidence            66677777888889999999888999999999999998888776655554443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00898 2A0119 cation transport protein

Probab=99.00  E-value=1.5e-08  Score=102.89  Aligned_cols=130  Identities=14%  Similarity=0.050  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHH
Q 016902          113 NFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYT  192 (380)
Q Consensus       113 ~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~  192 (380)
                      ...+....+.+++++++||+ |||+.+.++.++..++.+++.+..       .                   ......++
T Consensus       363 ~~~~~~i~~~~~~~~l~dr~-grr~~~~~~~~~~~~~~l~~~~~~-------~-------------------~~~~~~~~  415 (505)
T TIGR00898       363 ISGLVELPAKLITLLLIDRL-GRRYTMAASLLLAGVALLLLLFVP-------V-------------------DLYFLRTA  415 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHcC-------C-------------------CchHHHHH
Confidence            34455667788899999997 999999998887777766555421       0                   11122333


Q ss_pred             HHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHH
Q 016902          193 VLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS  272 (380)
Q Consensus       193 ~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~  272 (380)
                      ..++.+++.++..+....+.+|.+|++.      |++++++.+....+|+.++|.+.+ +. ..++...+++.+++.+++
T Consensus       416 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~ig~~i~p~i~~-~~-~~~~~~~~~~~~~~~~~~  487 (505)
T TIGR00898       416 LAVLGKFGITSAFQMVYLYTAELYPTVV------RNLGVGVCSTMARVGSIISPFLVY-LG-EKWLFLPLVLFGGLALLA  487 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccccHHH------HhhhHhHHHHHHHHHHHHHhHHHH-HH-HHHHhhHHHHHHHHHHHH
Confidence            4445556666677788899999999887      999999999999999999999888 43 345666777766666555


Q ss_pred             HHHHH
Q 016902          273 NMLFF  277 (380)
Q Consensus       273 ~i~~~  277 (380)
                      .++.+
T Consensus       488 ~~~~~  492 (505)
T TIGR00898       488 GILTL  492 (505)
T ss_pred             HHHHH
Confidence            44443

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.99  E-value=8.2e-08  Score=91.34  Aligned_cols=174  Identities=18%  Similarity=0.153  Sum_probs=142.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 016902           68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL  147 (380)
Q Consensus        68 ~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~  147 (380)
                      |-.+..++++.+--+-...++. .+..-+.+++|++.+.++.+.++..+...+..++..+|+-|+ |-.+.+.++.++..
T Consensus        11 ~~li~gIvlia~NLR~~itsvg-PLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~-g~er~l~~~Llli~   88 (395)
T COG2807          11 LLLLAGIVLIAFNLRPAITSVG-PLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRF-GEERSLFLALLLIA   88 (395)
T ss_pred             hHHHHHHHHHHhccchhhhhhh-hhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hhHHHHHHHHHHHH
Confidence            4445555555555566665454 466788999999999999999999999999999999999997 99999999998888


Q ss_pred             HHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhh
Q 016902          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (380)
Q Consensus       148 lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r  227 (380)
                      +|.++=..                             .+...++.+-.+.|.|.+......++++-+-||.+       .
T Consensus        89 ~G~~iR~~-----------------------------~~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-------~  132 (395)
T COG2807          89 AGILIRSL-----------------------------GGLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-------V  132 (395)
T ss_pred             HHHHHHhc-----------------------------ccHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-------h
Confidence            88766443                             23566888889999999999999999999999965       4


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhcc-hhhHHHHHHHHHHHHHHHHHHhh
Q 016902          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEH-GWGSAFGALAIAMGISNMLFFIG  279 (380)
Q Consensus       228 ~~~~~~~~~~~~iG~~i~~~i~~~i~~~~-gw~~~f~i~~~~~~~~~i~~~~~  279 (380)
                      +...+.|..+.++|+.+++.+...+.++. ||+....+=+...++++++.+-.
T Consensus       133 ~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlPq  185 (395)
T COG2807         133 GLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLPQ  185 (395)
T ss_pred             hhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhhh
Confidence            88889999999999999999999887766 79998887777777777665544

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.99  E-value=2.5e-09  Score=106.55  Aligned_cols=178  Identities=14%  Similarity=0.073  Sum_probs=125.9

Q ss_pred             HHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhcchhHHHH-HHHHHHHHHHHHH
Q 016902           79 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLAD----AYLGRYWTIA-IFTTIYLAGLTGI  153 (380)
Q Consensus        79 ~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD----~~~GR~~~i~-i~~~l~~lg~~~l  153 (380)
                      +...+.+.....+++.|+++.+|+++...+.+..+..+...+.-++.|.++|    |+ ||||..+ ++.++..++.+++
T Consensus        11 ~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~-Grrrp~~l~g~i~~~~~~~ll   89 (428)
T PF13347_consen   11 LGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRW-GRRRPWILIGAILLALSFFLL   89 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccc-cccceEeehhhHHHHHHHHHh
Confidence            4455555556678899999999999999999999999999999999999999    66 9876554 5677777777666


Q ss_pred             HhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHH
Q 016902          154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF  233 (380)
Q Consensus       154 ~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~  233 (380)
                      ....      |.              ..+.......+++..++..++......+..++++|..++.+     +|....++
T Consensus        90 f~~~------p~--------------~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~-----~R~~l~~~  144 (428)
T PF13347_consen   90 FSPP------PA--------------GLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPD-----ERTRLSSW  144 (428)
T ss_pred             hccc------cc--------------hhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHh-----hhhhHHHH
Confidence            5420      00              00000233445666666788888888999999999988643     27888888


Q ss_pred             HHHHHHHHHHHHHHHHHHhh----hc---chhhHHHHHHHHHHHHHHHHHHhhccc
Q 016902          234 FYLSVTVGAIVAFTLVVYIQ----ME---HGWGSAFGALAIAMGISNMLFFIGTPL  282 (380)
Q Consensus       234 ~~~~~~iG~~i~~~i~~~i~----~~---~gw~~~f~i~~~~~~~~~i~~~~~~~~  282 (380)
                      -.+...+|.++...+.+.+.    +.   .+|++.+.+.+++.++..++.+...|+
T Consensus       145 ~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke  200 (428)
T PF13347_consen  145 RMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE  200 (428)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence            77777777765444444332    21   168888888777777776666666555

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.98  E-value=1.9e-08  Score=112.15  Aligned_cols=183  Identities=6%  Similarity=-0.167  Sum_probs=125.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 016902           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (380)
Q Consensus        71 ~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~  150 (380)
                      ++..++..++..+.++++.++++.|+.+.+|.+...++.+.+.+.++..++.++.|+++|++ ++++.+.++.++..++.
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-~~~~~~~~~~~~~~~~~  305 (1140)
T PRK06814        227 IWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR-ITLLYVPIGALLMGLFG  305 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eeeeeehHHHHHHHHHH
Confidence            44555555555666667778899999999999999999999999999999999999999987 66665555554444444


Q ss_pred             HHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhH
Q 016902          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (380)
Q Consensus       151 ~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~  230 (380)
                      +.+.+... ....+....+.      ..+... ..+...++++.+++|++.+...+...+++.+.+|++.      +++.
T Consensus       306 ~~l~~~~~-~~~~~~~~~~~------~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~G~v  371 (1140)
T PRK06814        306 LDLAFASS-SVPAEPAQLKS------ILVFLS-KRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAH------RARV  371 (1140)
T ss_pred             HHHHhccc-ccccccccccc------hhhhhc-ccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCccc------ceee
Confidence            33332100 00000000000      000000 0123456677788899999888899999999999888      9999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhh-cchhhHHHHHHHHH
Q 016902          231 FNFFYLSVTVGAIVAFTLVVYIQM-EHGWGSAFGALAIA  268 (380)
Q Consensus       231 ~~~~~~~~~iG~~i~~~i~~~i~~-~~gw~~~f~i~~~~  268 (380)
                      ++.+++...+|..+++.+++.+.+ ..++...|++.+++
T Consensus       372 ~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~  410 (1140)
T PRK06814        372 IAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALA  410 (1140)
T ss_pred             eHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            999999999999999999988874 44566666554443

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.98  E-value=1.5e-08  Score=100.97  Aligned_cols=162  Identities=14%  Similarity=0.100  Sum_probs=126.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 016902           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA  148 (380)
Q Consensus        69 ~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~l  148 (380)
                      |....+++..++..++.....+..+.|.+..+|.+ ...+....+..+...++.+++++++||+ |+|+++.++.+++.+
T Consensus       225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~-gk~~~~~~~~~~~~~  302 (428)
T PF13347_consen  225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRF-GKKKVYIIGLLLAAL  302 (428)
T ss_pred             chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHc-cceeehhhhHHHHHH
Confidence            34555666666666776666666777777778877 4456666778888888999999999998 999999999999999


Q ss_pred             HHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCch-hhhhh
Q 016902          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD-YKTHL  227 (380)
Q Consensus       149 g~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~-~~~~r  227 (380)
                      +.+++.+...                          .+...+++...+.|+|.++......++.+|..|.++-+ .+++.
T Consensus       303 ~~~~~~~~~~--------------------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~  356 (428)
T PF13347_consen  303 GFLLLFFLGP--------------------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRRE  356 (428)
T ss_pred             HHHHHHHHHh--------------------------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCch
Confidence            9888776521                          25677888888999999999999999999999854322 22346


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Q 016902          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW  258 (380)
Q Consensus       228 ~~~~~~~~~~~~iG~~i~~~i~~~i~~~~gw  258 (380)
                      +..++.+.+...+|..++..+.+.+.+..|+
T Consensus       357 g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy  387 (428)
T PF13347_consen  357 GMYFSVNSFFIKIGQGLAGAIVGLLLALVGY  387 (428)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence            8888889999999999999988877554443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.97  E-value=5.9e-08  Score=94.99  Aligned_cols=166  Identities=10%  Similarity=-0.035  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh---HHHHH-HHH
Q 016902           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRY---WTIAI-FTT  144 (380)
Q Consensus        69 ~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~---~~i~i-~~~  144 (380)
                      +..+.+.+..++....+|++.+++++|+. +.|++.. ++....+......   +..++++|++ .|+   +.... ..+
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~-~~g~s~~-~~~~~~l~~~~g~---~g~~~~~d~~-~r~~~r~~~~~~~~~  265 (368)
T TIGR00903       192 KDLWIIGAILGFGVALFDNLAIWLEAALR-PAGLEDI-AGDAVALAILAGL---IGVAVIPDRV-ARAGLRSIYIRAAAL  265 (368)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCChH-HHHHHHHHHHHHH---HHHHHhhHHh-hhhhhHHHHHHHHHH
Confidence            34677777888889999999999999996 4678764 4444444444333   3457888886 543   33222 222


Q ss_pred             HHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhh
Q 016902          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (380)
Q Consensus       145 l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~  224 (380)
                      +..++...+...                            .+....++...+.+++..+..+...++.+|.+|++.    
T Consensus       266 ~~a~~~~~~~~~----------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~----  313 (368)
T TIGR00903       266 LIAAFFLALAFE----------------------------LNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKEL----  313 (368)
T ss_pred             HHHHHHHHHHHc----------------------------cccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhh----
Confidence            222222222211                            111223334445566666677778899999999888    


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHH
Q 016902          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF  276 (380)
Q Consensus       225 ~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~  276 (380)
                        |+++.++.+...++|+.++|.+.+.+..  |....|.+.++..+++.+..
T Consensus       314 --rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~  361 (368)
T TIGR00903       314 --HGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIA  361 (368)
T ss_pred             --cCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHH
Confidence              9999999999999999999988887763  55566666666555555443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK09848 glucuronide transporter; Provisional

Probab=98.96  E-value=8.6e-08  Score=96.10  Aligned_cols=157  Identities=11%  Similarity=0.058  Sum_probs=100.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cchhHHH-HHHH
Q 016902           68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWTI-AIFT  143 (380)
Q Consensus        68 ~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~---~GR~~~i-~i~~  143 (380)
                      ++..+.-.+..+..++.+..+..+++.|+++.+|++..+++.+.....+...+..+++|+++||.   +|||+.+ +++.
T Consensus         7 ~~~~~~yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~   86 (448)
T PRK09848          7 WRTIVGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGT   86 (448)
T ss_pred             HHHHHhhccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHH
Confidence            33334444455566677666777888899999999999999999999999999999999999984   4887755 4555


Q ss_pred             HHHHHHHHHHHhhhhcc-cCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCch
Q 016902          144 TIYLAGLTGITLCATMK-VFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD  222 (380)
Q Consensus       144 ~l~~lg~~~l~l~~~~~-~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~  222 (380)
                      +...+..+++...   | .+.+                   ......+++...+.+++.+...++..++..++..+.  +
T Consensus        87 ~~~~~~~~~~~~~---~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~--~  142 (448)
T PRK09848         87 APLMIFSVLVFWV---PTDWSH-------------------SSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQP--Q  142 (448)
T ss_pred             HHHHHHHHHHHhC---cCCCCc-------------------chHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCH--H
Confidence            5444433333211   1 0000                   022333444555677777788777777777776642  2


Q ss_pred             hhhhhhhHHHHHHHH-----HHHHHHHHHHHHHH
Q 016902          223 YKTHLDRFFNFFYLS-----VTVGAIVAFTLVVY  251 (380)
Q Consensus       223 ~~~~r~~~~~~~~~~-----~~iG~~i~~~i~~~  251 (380)
                      |   |....++..++     .+++..++|.+.+.
T Consensus       143 ~---r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~  173 (448)
T PRK09848        143 S---RARLGAARGIAASLTFVCLAFLIGPSIKNS  173 (448)
T ss_pred             H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            2   55655554433     33455555555543

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.96  E-value=4.5e-09  Score=102.42  Aligned_cols=140  Identities=16%  Similarity=0.155  Sum_probs=104.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCC
Q 016902          102 KSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEP  181 (380)
Q Consensus       102 ~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~  181 (380)
                      ++....+.+..+..++..+|+++.|+++|++ |||+++....++.+++++++.++                     .|..
T Consensus        81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~-GRK~vYG~~liImIi~t~~~~~s---------------------~~~~  138 (538)
T KOG0252|consen   81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKF-GRKKVYGKELIIMIICSALSGLS---------------------VGTT  138 (538)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-cchhhhhHHHHHHHHHHHHhccC---------------------CCCC
Confidence            5667778888889999999999999999998 99999999999999998866654                     1222


Q ss_pred             CcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHH----HHHHHHHHHHHHHHHHHHhhhc--
Q 016902          182 AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF----FYLSVTVGAIVAFTLVVYIQME--  255 (380)
Q Consensus       182 ~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~----~~~~~~iG~~i~~~i~~~i~~~--  255 (380)
                      +...-+.+++.-|+++|+|.|+=+|+..+...|....+.      |+.+.++    ..++...|+.++.++..-....  
T Consensus       139 ~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~------RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~  212 (538)
T KOG0252|consen  139 SPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKT------RGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFN  212 (538)
T ss_pred             CCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhcc------ccceeEEEEEecchhHhhccHHHHHHHHHHhccCC
Confidence            222457888999999999999999999999999888766      7776665    3445555555554444332211  


Q ss_pred             ---------chhhHHHHHHHHHH
Q 016902          256 ---------HGWGSAFGALAIAM  269 (380)
Q Consensus       256 ---------~gw~~~f~i~~~~~  269 (380)
                               .=||..|.+.++..
T Consensus       213 ~~~~~~~ld~vWRl~~glg~vpa  235 (538)
T KOG0252|consen  213 GPSTYPHLDGVWRIIFGLGAVPA  235 (538)
T ss_pred             CCCCchHHHHHHHHHHHHHHHHH
Confidence                     12888887655543

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.94  E-value=4.7e-08  Score=98.86  Aligned_cols=165  Identities=13%  Similarity=-0.015  Sum_probs=111.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 016902           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA  148 (380)
Q Consensus        69 ~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~l  148 (380)
                      |.+..+++..++..+..+...+..+.|++..++ +....+.+.....++..++.++.++++||+ |+|++++++.++.++
T Consensus       231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gkk~~~~~~~~~~~~  308 (473)
T PRK10429        231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSL-SRRILWAGASIFPVL  308 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHH
Confidence            445555566666666665554544434333333 444455555555577788888999999998 999999988887776


Q ss_pred             HHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCC-chhhhhh
Q 016902          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS-KDYKTHL  227 (380)
Q Consensus       149 g~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~-~~~~~~r  227 (380)
                      +.+.+.+....    ++                   .+...+++..++.+++.+...+...++.+|..|.++ +..++..
T Consensus       309 ~~~~~~~~~~~----~~-------------------~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~  365 (473)
T PRK10429        309 SCGVLLLMGLA----AP-------------------HNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCE  365 (473)
T ss_pred             HHHHHHHHhcc----Cc-------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccch
Confidence            66555432110    11                   234455666677889999888999999999987432 1222335


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Q 016902          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW  258 (380)
Q Consensus       228 ~~~~~~~~~~~~iG~~i~~~i~~~i~~~~gw  258 (380)
                      +.+++++.+..-+|..+++.+.+++.+..|+
T Consensus       366 G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        366 SIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            6788889999999999999999888665444

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.94  E-value=1.2e-07  Score=90.35  Aligned_cols=168  Identities=15%  Similarity=0.124  Sum_probs=131.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 016902           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (380)
Q Consensus        70 ~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg  149 (380)
                      ..|.+.+..-++++.+|.+..|+|.++. +.|+|..+++..++..++......+++-.+++|.-.+|+......+++.+|
T Consensus       209 ~aW~vtLfmGlqS~~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G  287 (395)
T COG2807         209 LAWQVTLFMGLQSLLYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVG  287 (395)
T ss_pred             hhHHHHHHHHhhHHHHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence            3566677777789999999999999887 669999999999999999999999999999998767888888899999999


Q ss_pred             HHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhh
Q 016902          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (380)
Q Consensus       150 ~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~  229 (380)
                      .+.+.+.       |                    .+...+.  .+++|+|.|+..+....++.+-.++.+  +   -++
T Consensus       288 ~~G~~~~-------P--------------------~~~~~lw--~~llG~G~G~~F~laL~li~~rs~~a~--~---Aa~  333 (395)
T COG2807         288 LVGLLLA-------P--------------------GQLPILW--ALLLGLGQGGAFPLALTLILLRSSDAA--I---AAA  333 (395)
T ss_pred             HHHHHHh-------h--------------------hhHHHHH--HHHHhCccchHHHHHHHHHHhhcCChH--H---HHH
Confidence            9888764       1                    1233333  478999999999999999999877543  2   344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcch-hhHHHHHHHHHHHHH
Q 016902          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGIS  272 (380)
Q Consensus       230 ~~~~~~~~~~iG~~i~~~i~~~i~~~~g-w~~~f~i~~~~~~~~  272 (380)
                      ..++-+-...+=+.+||.+.|++.|..| |...+...+.+.++.
T Consensus       334 LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m  377 (395)
T COG2807         334 LSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLM  377 (395)
T ss_pred             HHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHH
Confidence            5555555556667789999999998775 887766555444433

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.93  E-value=3.9e-08  Score=98.82  Aligned_cols=184  Identities=16%  Similarity=0.158  Sum_probs=123.1

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch----hHHHHHH
Q 016902           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGR----YWTIAIF  142 (380)
Q Consensus        67 ~~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR----~~~i~i~  142 (380)
                      +-+.+|.+++..++...+++.+..++|+|+.+.+|++..+.+...++..+...+..+++|.+||+...|    +....+.
T Consensus       256 ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkif  335 (466)
T KOG2532|consen  256 TSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIF  335 (466)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHH
Confidence            335689999999999999999999999999999999999999999999999999999999999987331    1222333


Q ss_pred             HHHHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCch
Q 016902          143 TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD  222 (380)
Q Consensus       143 ~~l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~  222 (380)
                      ..+...+..++.+...   +.    .|.          .. ......+.++..+.|+..+|...|.    .|. .++.  
T Consensus       336 n~i~~~~~ai~l~~l~---~~----~~~----------~~-~~a~~~l~~~~~~~g~~~~Gf~~~~----~~~-apq~--  390 (466)
T KOG2532|consen  336 NTIAFGGPAVFLLVLA---FT----SDE----------HR-LLAVILLTIAIGLSGFNISGFYKNH----QDI-APQH--  390 (466)
T ss_pred             HhHHHHHHHHHHHeee---ec----CCC----------cc-hHHHHHHHHHHHHcccchhhhHhhh----hhc-cchH--
Confidence            3333322222222100   00    111          00 0122222223333333334433221    121 2223  


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhc---chhhHHHHHHHHHHHHHHHHHHhh
Q 016902          223 YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME---HGWGSAFGALAIAMGISNMLFFIG  279 (380)
Q Consensus       223 ~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~---~gw~~~f~i~~~~~~~~~i~~~~~  279 (380)
                          -+..+++.++..++.++++|.+.+++..+   ..|++.|++.+++.+++.+++.+.
T Consensus       391 ----a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f  446 (466)
T KOG2532|consen  391 ----AGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF  446 (466)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence                57888889999999999999999988732   369999999999988887766543

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.92  E-value=1.1e-07  Score=95.14  Aligned_cols=186  Identities=13%  Similarity=0.067  Sum_probs=122.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 016902           68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL  147 (380)
Q Consensus        68 ~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~  147 (380)
                      .+..+.++...++..+..........+.+-..-|++..++.+..........+..+++.++.||+ |||+.++++..+..
T Consensus       268 R~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~-gRRpLll~~~~~~~  346 (485)
T KOG0569|consen  268 RRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL-GRRPLLLISLSLMA  346 (485)
T ss_pred             hHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHH
Confidence            33456666666666555444444455666677899999999999999999999999999999998 99999999999988


Q ss_pred             HHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchh-HH-HHHHHHHH--HHHhccchhhhhhhHhhccCCCCCchh
Q 016902          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQ-ML-YLYTVLYI--TGFGAAGIRPCVSSFGADQFDERSKDY  223 (380)
Q Consensus       148 lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~-~~-~l~~~l~l--~g~g~g~~~~~~~~~~ad~f~~~~~~~  223 (380)
                      +..+++.+...+....                     .. .. ..+++.++  ..++. |.-|...-+.+|+||...   
T Consensus       347 ~~~~~~~~~~~l~~~~---------------------~~~~~y~~i~~~~~~~~~f~~-G~gpi~~fi~aELf~~~~---  401 (485)
T KOG0569|consen  347 VALLLMSIALFLSNSF---------------------GSWLSYLCIAAIFLFIISFAI-GPGPIPWFIGAELFPQSA---  401 (485)
T ss_pred             HHHHHHHHHHHHHHHh---------------------hhHHHHHHHHHHHHHHHhhhc-CCCchhHHHHHHhCCccc---
Confidence            8887777654321100                     01 11 11233333  33333 334666778899999888   


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHhhcccc
Q 016902          224 KTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLY  283 (380)
Q Consensus       224 ~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~~  283 (380)
                         |..++++-.....+..++-.+....+++..|- ..|.+.++..++..+..+...|+-
T Consensus       402 ---R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPET  457 (485)
T KOG0569|consen  402 ---RSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPET  457 (485)
T ss_pred             ---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCccc
Confidence               88888886666666666655555666666653 445555555555555544444443

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.91  E-value=1.8e-08  Score=101.76  Aligned_cols=147  Identities=12%  Similarity=0.060  Sum_probs=115.3

Q ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCccccccccc
Q 016902           97 FYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL  176 (380)
Q Consensus        97 ~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~  176 (380)
                      ..+.|+...+-+.+.++|.+++.++.++++.|.||+ .-.+.+..+.++..+..++....                    
T Consensus        73 ~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~-~ls~~l~~~~~~w~~~~~~~~~~--------------------  131 (495)
T KOG2533|consen   73 KEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF-PLSKGLSVSGILWGLFGFLTAAV--------------------  131 (495)
T ss_pred             ccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence            366778888899999999999999999999999998 74444433333332222221111                    


Q ss_pred             CCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh--
Q 016902          177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM--  254 (380)
Q Consensus       177 ~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~--  254 (380)
                              .+...+++.|++.|+..++..|+...+++-.|.+++      |+.-+++|+.+..+|..+|.++...+.+  
T Consensus       132 --------~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~  197 (495)
T KOG2533|consen  132 --------HSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKLN  197 (495)
T ss_pred             --------hhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhhc
Confidence                    357788999999999999999999999999999877      9999999999999999999888877632  


Q ss_pred             ----cchhhHHHHHHHHHHHHHHHHHHh
Q 016902          255 ----EHGWGSAFGALAIAMGISNMLFFI  278 (380)
Q Consensus       255 ----~~gw~~~f~i~~~~~~~~~i~~~~  278 (380)
                          ..||+|.|.|.++++++..++.++
T Consensus       198 ~~~~~~gW~~~FiI~G~i~~~~gi~~f~  225 (495)
T KOG2533|consen  198 GSGGLAGWRWLFIIEGVITLVLGIVVFF  225 (495)
T ss_pred             CCCCcCCceeehhHHHHHHHHHHheEEE
Confidence                458999999998877665554433

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.89  E-value=2.4e-07  Score=91.41  Aligned_cols=154  Identities=6%  Similarity=-0.058  Sum_probs=109.0

Q ss_pred             HHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCC
Q 016902           86 FGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPN  165 (380)
Q Consensus        86 ~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~  165 (380)
                      ......++.|+++.+|++..+.+.+.....++..++.++.+++.|++ ++++.+.++.++ .+..+.+...         
T Consensus       222 ~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~-~~~~~~~~g~~~-~~~~~~~~~~---------  290 (393)
T PRK11195        222 ATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLE-TVLRVLPAGILM-GLVVLLMALQ---------  290 (393)
T ss_pred             HHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccchHHHHHHH-HHHHHHHHHH---------
Confidence            34444566788889999999999999999999999999999999987 888887776433 2222222221         


Q ss_pred             CCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHH
Q 016902          166 QDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA  245 (380)
Q Consensus       166 ~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~  245 (380)
                                         .+...+.+..++.|++.+...++..+...+..|++.     .+++.++..++..++|..++
T Consensus       291 -------------------~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~-----~~g~~~a~~~~~~~~~~~~~  346 (393)
T PRK11195        291 -------------------HSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLV-----GAGHSIAVQNFNENLAMLLM  346 (393)
T ss_pred             -------------------hHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccc-----cchhHHHHHhHHHHHHHHHH
Confidence                               234445556667888888877777777776544321     16889999999999999999


Q ss_pred             HHHHHHhhhcchhhHHHHHHHHHHHHHHHH
Q 016902          246 FTLVVYIQMEHGWGSAFGALAIAMGISNML  275 (380)
Q Consensus       246 ~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~  275 (380)
                      ..+.+.+ +..|-++.+.+..+..++.+.+
T Consensus       347 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  375 (393)
T PRK11195        347 LGLYSLL-VKLGVPVVAVIVGFGLLVALAM  375 (393)
T ss_pred             HHHHHHH-HHcCCCHHHHHHHHHHHHHHHH
Confidence            8888755 5667666666655554444443

>PRK11043 putative transporter; Provisional

Probab=98.89  E-value=4.7e-07  Score=89.12  Aligned_cols=148  Identities=11%  Similarity=-0.001  Sum_probs=100.8

Q ss_pred             HHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhccc
Q 016902           82 RMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKV  161 (380)
Q Consensus        82 ~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~  161 (380)
                      ...++.+..+++.|++ ++|++..+.+........+..++.++++++.||+ ||++.+....++..++.+.+.+..... 
T Consensus       216 ~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-  292 (401)
T PRK11043        216 SAAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKW-GGEQLLPWLLVLFAVSVIAIWLASLLS-  292 (401)
T ss_pred             HHHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence            3444555566777765 5899998888877777778888889999999997 999877666555555444333221100 


Q ss_pred             CCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHH
Q 016902          162 FMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVG  241 (380)
Q Consensus       162 l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG  241 (380)
                        +                    .....++++..+.+++.+...+.......+.+|+ .      +++..++++.....+
T Consensus       293 --~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~g~~~g~~~~~~~~~  343 (401)
T PRK11043        293 --H--------------------PSLVPLLIPFCVMAAANGAIYPIVVAQALRPFPQ-A------TGKAAALQNTLQLGL  343 (401)
T ss_pred             --c--------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcc-c------ChHHHHHHHHHHHHH
Confidence              0                    1233445556677888888888887777777753 4      789999988877777


Q ss_pred             HHHHHHHHHHhhhcchhhHH
Q 016902          242 AIVAFTLVVYIQMEHGWGSA  261 (380)
Q Consensus       242 ~~i~~~i~~~i~~~~gw~~~  261 (380)
                      +.+++.+.+.+.+.......
T Consensus       344 ~~~~~~~~g~l~~~~~~~~~  363 (401)
T PRK11043        344 CFLASLLVSALISTPLLTTG  363 (401)
T ss_pred             HHHHHHHHHHccCCChhHHH
Confidence            78888888877664433333

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.88  E-value=7e-08  Score=91.83  Aligned_cols=187  Identities=12%  Similarity=0.020  Sum_probs=122.6

Q ss_pred             HhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcc
Q 016902           90 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC  169 (380)
Q Consensus        90 ~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~~~c  169 (380)
                      +.+..-+....|.+..+...+......+..++...+|.++|++ |||+...+..+...+..++-..+             
T Consensus        98 s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~-grr~~f~~T~l~t~v~~~is~~s-------------  163 (528)
T KOG0253|consen   98 SLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTI-GRRKGFNLTFLVTGVFGVISGAS-------------  163 (528)
T ss_pred             HHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhh-hcchhhhhhHHHHHHHHHhhcCC-------------
Confidence            3334445666788888888999999999999999999999998 99998877766555443333322             


Q ss_pred             cccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 016902          170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV  249 (380)
Q Consensus       170 ~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~  249 (380)
                                     ++...+++.+++.++|.|+ .|...+.-.|..|..+      |..-.-.. ....+|..+...+.
T Consensus       164 ---------------pnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~------r~~~~V~~-~~waig~v~ea~la  220 (528)
T KOG0253|consen  164 ---------------PNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH------RWLLTVMS-FFWAIGQVFEALLA  220 (528)
T ss_pred             ---------------CCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC------CCcchhHH-HHHHHHHHHHHHHH
Confidence                           4677899999999999999 8888888899888766      54433333 33455666665555


Q ss_pred             HHhhhcchhhHHHHHHHHHHHHHHHHHHhhcccccccCCCCCccchHHHHHHHHHhhcccccCcc
Q 016902          250 VYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSS  314 (380)
Q Consensus       250 ~~i~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~r~~~~p~~  314 (380)
                      =.+..+.||||-.........+...+.++.....|..--+|++-+.+ ..+....|-.+.++|-.
T Consensus       221 w~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAl-etL~kiArmNg~qlplg  284 (528)
T KOG0253|consen  221 WGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKAL-ETLHKIARMNGKQLPLG  284 (528)
T ss_pred             HHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHH-HHHHHHHHhcCCCCCcc
Confidence            44556789998766555444333333333322223333345554443 33444445555677754

>TIGR00901 2A0125 AmpG-related permease

Probab=98.88  E-value=8.4e-08  Score=92.85  Aligned_cols=144  Identities=10%  Similarity=0.033  Sum_probs=105.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 016902           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFL-GISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (380)
Q Consensus        71 ~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~-~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg  149 (380)
                      .+.+++..++..+++++..+.++.|+++ +|++..+.+.+..... +...++.+++|+++||+ |||+.+.++.++..++
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~~  288 (356)
T TIGR00901       211 ALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPL-NILYALLLFGIVQALT  288 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHH
Confidence            5555555666678888888889999986 9999999887777655 56778899999999998 9999998888877766


Q ss_pred             HHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhh
Q 016902          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (380)
Q Consensus       150 ~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~  229 (380)
                      ..++.+....  ....            .   ....+...++.+.++.+++.+...+...++..+.+|++.      |++
T Consensus       289 ~~~~~~~~~~--~~~~------------~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~  345 (356)
T TIGR00901       289 NAGFVWLASN--GHHD------------G---ITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKF------GAT  345 (356)
T ss_pred             HHHHHHHHhc--Cccc------------c---cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCc------cHH
Confidence            5554432110  0000            0   000123455666677899999999999999999999988      999


Q ss_pred             HHHHHHHHHH
Q 016902          230 FFNFFYLSVT  239 (380)
Q Consensus       230 ~~~~~~~~~~  239 (380)
                      .+++++...+
T Consensus       346 ~~g~~~~~~~  355 (356)
T TIGR00901       346 QMALLSSLSA  355 (356)
T ss_pred             HHHHHHHHHh
Confidence            9998776544

>PRK09669 putative symporter YagG; Provisional

Probab=98.88  E-value=2e-07  Score=93.42  Aligned_cols=124  Identities=12%  Similarity=0.065  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhH
Q 016902          108 SNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQM  187 (380)
Q Consensus       108 ~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~  187 (380)
                      +.......+...++.+++++++||+ |+|+.+.++.++..++.+.+.+.       ++                   .+.
T Consensus       267 ~~~~~~~~i~~ii~~~~~~~l~~r~-gk~~~~~~~~~~~~~~~~~~~~~-------~~-------------------~~~  319 (444)
T PRK09669        267 TLFLVTGMIAGLFGALLSERLLGKF-DRVRAFKWTIVAFVILSALIFFI-------PP-------------------SNV  319 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHh-------Cc-------------------chH
Confidence            3444455566677788899999997 99999988876665443332221       11                   245


Q ss_pred             HHHHHHHHHHHHhccchhhhhhhHhhccCCCCCc-hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Q 016902          188 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK-DYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW  258 (380)
Q Consensus       188 ~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~-~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~gw  258 (380)
                      ..+++..++.++|.++..+...++.+|..|.++. ..++..+.+++.+.+...+|..+++.+++++.+..|+
T Consensus       320 ~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy  391 (444)
T PRK09669        320 WLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY  391 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            5567777889999999999999999999984332 1223357788889999999999999999988766555

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.87  E-value=4.7e-07  Score=86.58  Aligned_cols=155  Identities=16%  Similarity=0.118  Sum_probs=106.0

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCccccc
Q 016902           93 VTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRI  172 (380)
Q Consensus        93 ~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~~~c~~~  172 (380)
                      ...+-+++|++..+.+.+...-.+...+...+.|.++|++ |||+..++.++++.+..+..-.                 
T Consensus        57 ~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-Grk~~cl~~cily~~scl~k~~-----------------  118 (354)
T PF05631_consen   57 LYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY-GRKKACLLFCILYSLSCLTKHS-----------------  118 (354)
T ss_pred             hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHhc-----------------
Confidence            3344568999999988888888888888888999999998 9999999999998877653222                 


Q ss_pred             ccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCC-chhhhhhhhHHHHHH-HHHHHHHHHHHHHHH
Q 016902          173 SQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS-KDYKTHLDRFFNFFY-LSVTVGAIVAFTLVV  250 (380)
Q Consensus       173 ~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~-~~~~~~r~~~~~~~~-~~~~iG~~i~~~i~~  250 (380)
                                  .+...++++|++.|+++.....+--+........++ +++  -.+.-|+... +.+.+-+.++.+++-
T Consensus       119 ------------~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~--~L~~tF~~~tf~~n~~vAI~aGv~a~  184 (354)
T PF05631_consen  119 ------------SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQE--WLSDTFSLATFFGNGVVAIGAGVVAN  184 (354)
T ss_pred             ------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH--HHHHHHHHHHHHHhHHHHHHHhHHHH
Confidence                        467889999999999998888776665544333222 111  1444454433 333333444445555


Q ss_pred             Hhhhcchh--hHHHHHHHHHHHHHHHHHHhh
Q 016902          251 YIQMEHGW--GSAFGALAIAMGISNMLFFIG  279 (380)
Q Consensus       251 ~i~~~~gw--~~~f~i~~~~~~~~~i~~~~~  279 (380)
                      ++.+..+.  ..+|....++.+++.++....
T Consensus       185 ~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~  215 (354)
T PF05631_consen  185 VLADWFGFGPVAPFDAAIVLLAVAAVLILKT  215 (354)
T ss_pred             HHHHHhCCCCcchHHHHHHHHHHHHHHHHhc
Confidence            66665554  678888777777776655443

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.85  E-value=8.5e-08  Score=91.76  Aligned_cols=141  Identities=19%  Similarity=0.239  Sum_probs=114.2

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 016902           74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKS-FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG  152 (380)
Q Consensus        74 i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s-~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~  152 (380)
                      ++...++..+.+++...+++.|+.+.+|++ ..+.+.......++..++.++.|+++||+ |+++.+.+......++.+.
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~  289 (352)
T PF07690_consen  211 LLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRF-GRRRRLLIAILLLILGALG  289 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHHH
Confidence            444444445566667788889989999999 78889889999999999999999999997 9988888887777777666


Q ss_pred             HHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHH
Q 016902          153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN  232 (380)
Q Consensus       153 l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~  232 (380)
                      +.+....                         .+....++..++.|++.+...+....+..|.+|++.      +++..+
T Consensus       290 ~~~~~~~-------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g  338 (352)
T PF07690_consen  290 LLLLPFS-------------------------SSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEY------RGTAFG  338 (352)
T ss_dssp             HCCSHHH-------------------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCH------HHHHHH
T ss_pred             HHHHHHh-------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHH
Confidence            6553210                         134556667788999999999999999999999877      999999


Q ss_pred             HHHHHHHHHHHHHH
Q 016902          233 FFYLSVTVGAIVAF  246 (380)
Q Consensus       233 ~~~~~~~iG~~i~~  246 (380)
                      +++...++|..++|
T Consensus       339 ~~~~~~~~~~~igP  352 (352)
T PF07690_consen  339 LFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCC
Confidence            99999999999886

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.85  E-value=7.6e-07  Score=86.62  Aligned_cols=143  Identities=10%  Similarity=-0.095  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHh
Q 016902           76 GNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITL  155 (380)
Q Consensus        76 ~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l  155 (380)
                      +..++.....+.+..+.+.|+.+.+|++..+.+.......++..++.+++|+++||+ |||+++.++.++..+..+.+..
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~  279 (377)
T PRK11102        201 LASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRV-GALNMLRFGLWIQFIMGIWLVV  279 (377)
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444455555667778888999999999999999999999999999999997 9999999888765443333322


Q ss_pred             hhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHH
Q 016902          156 CATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY  235 (380)
Q Consensus       156 ~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~  235 (380)
                      ....    +                    .....+.++..+.+.+.+...+....+..|..| +.      +++..+.++
T Consensus       280 ~~~~----~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~~~~~  328 (377)
T PRK11102        280 SALL----D--------------------LGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HM------AGTASSLAG  328 (377)
T ss_pred             HHHH----h--------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-cc------chHHHHHHH
Confidence            2110    0                    122333334434444444555555566667665 34      677777754


Q ss_pred             HH-HHHHHHHHHHHHH
Q 016902          236 LS-VTVGAIVAFTLVV  250 (380)
Q Consensus       236 ~~-~~iG~~i~~~i~~  250 (380)
                      .. ..+|+.+++.+..
T Consensus       329 ~~~~~~g~~~g~~~~~  344 (377)
T PRK11102        329 TLRFGIGAIVGALLSL  344 (377)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            43 3466666665543

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=98.80  E-value=1e-07  Score=95.03  Aligned_cols=191  Identities=13%  Similarity=0.021  Sum_probs=139.3

Q ss_pred             CcccCCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-hHH
Q 016902           61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFY-VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGR-YWT  138 (380)
Q Consensus        61 ~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~-~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR-~~~  138 (380)
                      ....+.+||.+++..++.++..+.++.+.+..=.|+++ +.+-+....+++++...++..+..++.|+.+.+. |. |+.
T Consensus        26 ~~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~-~~~k~P  104 (488)
T KOG2325|consen   26 LDERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKT-GSVKKP  104 (488)
T ss_pred             ccccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccccc-CCcccC
Confidence            34457889999999999999888887776667788875 4666777889999999999999999999999997 76 788


Q ss_pred             HHHHHHHHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCC
Q 016902          139 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE  218 (380)
Q Consensus       139 i~i~~~l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~  218 (380)
                      ++.|+++.++|.++-......    |+                   ....++.++|++.|+|.|. .+..-+|++|..-.
T Consensus       105 li~s~ii~~~g~llY~~l~~~----~~-------------------~~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~  160 (488)
T KOG2325|consen  105 LIVSFLIAIIGNLLYLALAYV----PN-------------------GVKYLMLVARILTGVGVGN-FAVLRAYIADASTV  160 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc----cc-------------------chHHHHHHHHHHcCcCccc-HHHHHHHHHhccCc
Confidence            889999999998887333322    11                   2577889999999999765 56778999997776


Q ss_pred             CCchhhhhhhhHHHHHHHHHHHHHHHHHHHH----HHhhhcc---------hhhHHHHHHHHHHHHHHHHHHhhccc
Q 016902          219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV----VYIQMEH---------GWGSAFGALAIAMGISNMLFFIGTPL  282 (380)
Q Consensus       219 ~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~----~~i~~~~---------gw~~~f~i~~~~~~~~~i~~~~~~~~  282 (380)
                      ++      |.++++....+..+|..+||++.    +..+..+         -+..+-|+.+++.++.++++.+..++
T Consensus       161 ~d------R~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E  231 (488)
T KOG2325|consen  161 ED------RPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKE  231 (488)
T ss_pred             cc------hHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheee
Confidence            66      77777776555555555555544    3332211         13445567777766666665554443

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.79  E-value=8.9e-08  Score=97.38  Aligned_cols=178  Identities=16%  Similarity=0.151  Sum_probs=137.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 016902           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA  148 (380)
Q Consensus        69 ~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~l  148 (380)
                      +..+.+.+...+..++++.-...++.|.. .++++..+++..+++..+...++-++.|+++|+. ..++..+....+...
T Consensus       298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~-~~~~~~~~~~~ll~~  375 (509)
T KOG2504|consen  298 PKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP-GIRALVLFLLTLLIA  375 (509)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc-ccchHHHHHHHHHHH
Confidence            34566666666777777777777888877 8899999999999999999999999999999987 533333333333333


Q ss_pred             HHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhh
Q 016902          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD  228 (380)
Q Consensus       149 g~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~  228 (380)
                      |...+.+.           .|               .+...+++.-.+.|+..|.........+.|..+.+.      ..
T Consensus       376 gl~~~~~p-----------~~---------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~------l~  423 (509)
T KOG2504|consen  376 GLARLFLP-----------FA---------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK------LS  423 (509)
T ss_pred             HHHHHHHH-----------Hh---------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh------cc
Confidence            33332221           11               245666677778899999888888889999999887      99


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhcch-hhHHHHHHHHHHHHHHHHHHhhc
Q 016902          229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIGT  280 (380)
Q Consensus       229 ~~~~~~~~~~~iG~~i~~~i~~~i~~~~g-w~~~f~i~~~~~~~~~i~~~~~~  280 (380)
                      .++++..+...++.+++|.+.+++.+..| |...|+.+.++++++.++.+..+
T Consensus       424 ~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  424 NAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             hHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence            99999999999999999999999988887 99999988888887776655443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.79  E-value=4.3e-07  Score=90.19  Aligned_cols=161  Identities=9%  Similarity=-0.034  Sum_probs=113.0

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 016902           74 IFGNEMAERMAYFGLSVNMVTFMFYV-MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG  152 (380)
Q Consensus        74 i~~~~~~~~~~~~~i~~~l~~yl~~~-~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~  152 (380)
                      ..+..++......++.++++.|+.+. .+.+...++...+.+.++..++.+++++++||+ ++++.+.++.++..+..++
T Consensus       237 ~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~-~~~~~l~i~~~~~~~~~ll  315 (410)
T TIGR00885       237 GVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYL-AAHKVLMAYAIIGMALCLG  315 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHH
Confidence            33344444444445667888998653 255555566677777788899999999999997 9999888887777766655


Q ss_pred             HHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHH
Q 016902          153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN  232 (380)
Q Consensus       153 l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~  232 (380)
                      +.+.                            ... .....+.+.+++.+.+.|.+.+...+.++++.      .... .
T Consensus       316 ~~~~----------------------------~~~-~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~------~~~s-~  359 (410)
T TIGR00885       316 SIFA----------------------------GGH-VGLYCLTLCSAFMSLMFPTIYGIALKGLGQDT------KYGA-A  359 (410)
T ss_pred             HHHc----------------------------CCh-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh------hhhH-H
Confidence            5542                            111 12455667788888888999999999998654      2222 2


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcc------hhhHHHHHHHHHHHHH
Q 016902          233 FFYLSVTVGAIVAFTLVVYIQMEH------GWGSAFGALAIAMGIS  272 (380)
Q Consensus       233 ~~~~~~~iG~~i~~~i~~~i~~~~------gw~~~f~i~~~~~~~~  272 (380)
                      ...++ .+|+.+.|.+.|++.|..      +.+..|.++.++.+..
T Consensus       360 ~l~~~-~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~~~  404 (410)
T TIGR00885       360 GLVMA-IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFAVI  404 (410)
T ss_pred             HHHHH-HhccchHHHHHHHHHHHhcccccCccchHHHHHHHHHHHH
Confidence            22223 399999999999999854      4788899888776543

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.78  E-value=2.3e-06  Score=84.02  Aligned_cols=68  Identities=13%  Similarity=0.066  Sum_probs=57.2

Q ss_pred             HHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhh
Q 016902           88 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLC  156 (380)
Q Consensus        88 i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~  156 (380)
                      +....+.|+++++|++..+.+.......++..++.++.++++||+ |||+.+.++..+..++.+++.+.
T Consensus       222 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~  289 (392)
T PRK10473        222 FVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIF-KPRTLMLTSQVLFLAAGITLALS  289 (392)
T ss_pred             HHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHH
Confidence            444456778888999998888888888888889999999999997 99999999988888887776654

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.77  E-value=2.2e-07  Score=88.45  Aligned_cols=171  Identities=12%  Similarity=0.095  Sum_probs=110.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc--CC---------------CH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 016902           68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM--HK---------------SF--ADSSNAVNNFLGISQASSVLGGFL  128 (380)
Q Consensus        68 ~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~--~~---------------s~--~~a~~~~~~~~~~~~~~~l~~g~l  128 (380)
                      .+..+.++.+.|...+.+||+.-......+...  |.               ..  ..--.-+.+..+.-+-|.++.+++
T Consensus       325 rkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~i  404 (528)
T KOG0253|consen  325 RKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVI  404 (528)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHH
Confidence            344566777888889999987653332222211  11               11  111122233445566678999999


Q ss_pred             HHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhh
Q 016902          129 ADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCV  208 (380)
Q Consensus       129 sD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~  208 (380)
                      .|++ |||+++..+.+++.+.++++.....     ++                   ....+++++|+++.    +...+.
T Consensus       405 verl-GRKkTMal~l~~f~iflfll~~c~~-----rn-------------------~~tvllf~arafis----g~fqva  455 (528)
T KOG0253|consen  405 VERL-GRKKTMALSLILFGIFLFLLTTCKT-----RN-------------------AYTVLLFTARAFIS----GAFQVA  455 (528)
T ss_pred             HHHh-cchhHHHHHHHHHHHHHHHHHHhcC-----cc-------------------hhHHHHHHHHHHHh----chheEE
Confidence            9996 9999999999999888877765311     00                   22445666776654    445567


Q ss_pred             hhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHH
Q 016902          209 SSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNML  275 (380)
Q Consensus       209 ~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~  275 (380)
                      +.|..|.+|+..      |+.+.+.-.-...||++++|+++  +..+.+-..+..+..++.+++.+.
T Consensus       456 YvYtPEVyPTav------RatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIa  514 (528)
T KOG0253|consen  456 YVYTPEVYPTAV------RATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIA  514 (528)
T ss_pred             EEecCcccchhh------hhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHH
Confidence            888999999988      99999998888999999999988  333333333444444444444443

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.76  E-value=9.3e-07  Score=87.94  Aligned_cols=215  Identities=12%  Similarity=0.113  Sum_probs=143.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cchhHHH-HHHHH
Q 016902           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWTI-AIFTT  144 (380)
Q Consensus        69 ~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~---~GR~~~i-~i~~~  144 (380)
                      +.-+--.+.-+..++.+..+..++..|.++.+|++...++.+..+.-+.-++.-++.|.++||.   +||+|.. +++.+
T Consensus        12 ~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~i   91 (467)
T COG2211          12 KEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAI   91 (467)
T ss_pred             HHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhH
Confidence            3334444455566677767778899999999999999999999999999999999999999953   5987654 45556


Q ss_pred             HHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhh
Q 016902          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (380)
Q Consensus       145 l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~  224 (380)
                      .+.+..+++..+       |+  .+             .+.+....++..++.+++...+..+..++.+++.++.  +| 
T Consensus        92 p~~i~~~l~F~~-------p~--~~-------------~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~--~E-  146 (467)
T COG2211          92 PFAIVAVLLFIT-------PD--FS-------------MTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDP--QE-  146 (467)
T ss_pred             HHHHHHHHHHcC-------CC--cc-------------cCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCH--HH-
Confidence            677766666654       11  01             0134555566667888888888888889999988753  33 


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHhhh-------cchhhHHHHHHHHHHHHHHHHHHhhcccc-cccCCCCC-ccch
Q 016902          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQM-------EHGWGSAFGALAIAMGISNMLFFIGTPLY-RHRLPGGS-PLTR  295 (380)
Q Consensus       225 ~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~-------~~gw~~~f~i~~~~~~~~~i~~~~~~~~~-~~~~~~~~-~~~~  295 (380)
                        |.+..+|..+..++|.++...+...+..       ..||+...++.+++..+++++.+...++. ....+..+ ...+
T Consensus       147 --R~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~~~~~  224 (467)
T COG2211         147 --RASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTGVKLK  224 (467)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCccccccc
Confidence              8999999988888887776555544432       23566555555555555544444433332 22222222 4455


Q ss_pred             HHHHHHHHHhhcccc
Q 016902          296 VAQVLVAAFRKRHAA  310 (380)
Q Consensus       296 ~~~v~~~a~~~r~~~  310 (380)
                      +...+...+|||...
T Consensus       225 ~~~~~~~~~~Nrp~~  239 (467)
T COG2211         225 LKDSFLLIFKNRPLL  239 (467)
T ss_pred             HHHHHHHHHccchHH
Confidence            665666667776543

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.70  E-value=5.4e-07  Score=88.57  Aligned_cols=179  Identities=12%  Similarity=-0.009  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH-
Q 016902           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA-  148 (380)
Q Consensus        70 ~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~l-  148 (380)
                      ..+...+..++..+++-...++++.+|++..|++.++.+.+.++..+...+..++.|.++||+ |.||-+++...+..+ 
T Consensus         8 ~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dkl-g~kK~Ll~~i~~l~~l   86 (412)
T PF01306_consen    8 NYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKL-GLKKHLLWFIAILLLL   86 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHC-TTCSHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchh-hhhHHHHHHHHHHHHH
Confidence            445555555555566555678899999999999999999999999999999999999999997 866655444333222 


Q ss_pred             -HHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhh
Q 016902          149 -GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (380)
Q Consensus       149 -g~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r  227 (380)
                       +.....+.  .|.+..                     |   ++++..+.++..+.......+. .|.+-++.+   ++.
T Consensus        87 ~~pff~~v~--~pll~~---------------------n---~~lg~iig~i~l~~~f~~~~~~-~Ea~~er~s---r~~  136 (412)
T PF01306_consen   87 FGPFFIYVF--GPLLQS---------------------N---FWLGAIIGGIYLGLVFNAGVPL-SEAYAERVS---RRN  136 (412)
T ss_dssp             CHHHHHHTH--HHHHHT---------------------T----HHHHHHTTTTTTTTTTTHHHH-HHHHHHHHH---HHH
T ss_pred             HHHHHHHHH--HHHHHH---------------------H---HHHHHHHHHHHHHHHHcccchH-HHHHHHHHH---HHh
Confidence             22222111  111111                     1   2333333333323222222111 144332221   111


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHhhc
Q 016902          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT  280 (380)
Q Consensus       228 ~~~~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~~~~  280 (380)
                      +-=++---....+|.+++..++|++.+ .+-...||+..++.++..++.+..+
T Consensus       137 ~feYG~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~~~  188 (412)
T PF01306_consen  137 GFEYGRARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLLLK  188 (412)
T ss_dssp             SS-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSS-
T ss_pred             cCCcchHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHHcC
Confidence            222333455677888888889998875 4556788877666555554444444

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK11462 putative transporter; Provisional

Probab=98.69  E-value=2.4e-06  Score=86.20  Aligned_cols=154  Identities=10%  Similarity=0.040  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhh
Q 016902           77 NEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLC  156 (380)
Q Consensus        77 ~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~  156 (380)
                      ..++..+......+....|.+-.+|.. ...+.+...+.+...++.+++++++||+ |+|+++..+..+..+..+++.+.
T Consensus       236 ~~~~~~~~~~~~~~~~~y~~~y~~g~~-~~~~~~l~~~~i~~iig~~l~~~l~~r~-gkk~~~~~~~~~~~~~~~~~~~~  313 (460)
T PRK11462        236 LTIFNILAVCVRGGAMMYYVTWILGTP-EVFVAFLTTYCVGNLIGSALAKPLTDWK-CKVTIFWWTNALLAVISLAMFFV  313 (460)
T ss_pred             HHHHHHHHHHHHHhHhhhhhhhhcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHh
Confidence            334444443333333333333334433 3334556667777788889999999997 99888765554443333332221


Q ss_pred             hhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCch-hhhhhhhHHHHHH
Q 016902          157 ATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD-YKTHLDRFFNFFY  235 (380)
Q Consensus       157 ~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~-~~~~r~~~~~~~~  235 (380)
                             +.                   .+...+++..++.+++.++..+...++.+|..|.++-+ .+++-+.+++.+.
T Consensus       314 -------~~-------------------~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~  367 (460)
T PRK11462        314 -------PM-------------------QASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTL  367 (460)
T ss_pred             -------ch-------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHH
Confidence                   11                   12223344455667777777777788889988743211 1122355667777


Q ss_pred             HHHHHHHHHHHHHHHHhhhcchh
Q 016902          236 LSVTVGAIVAFTLVVYIQMEHGW  258 (380)
Q Consensus       236 ~~~~iG~~i~~~i~~~i~~~~gw  258 (380)
                      +...+|..+++.+.+++.+..||
T Consensus       368 f~~Klg~alg~~i~g~iL~~~Gy  390 (460)
T PRK11462        368 FVLKLGLAFGGALIGWMLAYGGY  390 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCC
Confidence            88888888888888776544343

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.68  E-value=9.6e-07  Score=87.86  Aligned_cols=158  Identities=14%  Similarity=0.031  Sum_probs=119.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 016902           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (380)
Q Consensus        71 ~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~  150 (380)
                      ..++++..++...++....+.++.|.+..+|.+...+.........+..++.++..+|++++ |+|+++.++.++.+++.
T Consensus       238 ~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~-gkk~~~~~~~~~~~i~~  316 (467)
T COG2211         238 LLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKF-GKKKLFLIGLLLLAVGY  316 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-chHHHHHHHHHHHHHHH
Confidence            44455555665555555555667777777888877777777777777777789999999997 99999999999999999


Q ss_pred             HHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCch-hhhhhhh
Q 016902          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD-YKTHLDR  229 (380)
Q Consensus       151 ~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~-~~~~r~~  229 (380)
                      +++.+..       +                   .+..++++...+.++|.+...+...++++|..|-++-+ .++.-|.
T Consensus       317 ~~~~f~~-------~-------------------~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi  370 (467)
T COG2211         317 LLLYFTP-------A-------------------GSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGI  370 (467)
T ss_pred             HHHHhhc-------C-------------------cchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhh
Confidence            9888752       1                   45777888888999999999999999999998843321 1222466


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhc
Q 016902          230 FFNFFYLSVTVGAIVAFTLVVYIQME  255 (380)
Q Consensus       230 ~~~~~~~~~~iG~~i~~~i~~~i~~~  255 (380)
                      .++.+.+..=+|..++..+.+++...
T Consensus       371 ~~s~~tF~~K~g~ala~~~~g~~L~~  396 (467)
T COG2211         371 VYSGMTFFRKLGLALAGFIPGWILGA  396 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777778888877777766443

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.68  E-value=3.3e-06  Score=83.12  Aligned_cols=176  Identities=9%  Similarity=0.066  Sum_probs=132.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 016902           68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHK---SFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (380)
Q Consensus        68 ~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~---s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~  144 (380)
                      -|..|...+........++......+.|.+..++-   +....+...++-.+.-.+.-.+..++-+|+ |-|+.++++.+
T Consensus       219 ~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri-g~k~~Lllag~  297 (412)
T PF01306_consen  219 MRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI-GAKNLLLLAGV  297 (412)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc-ChHhHHHHHHH
Confidence            34556555555555555555655678888766543   334456677777777788888889999997 99999999999


Q ss_pred             HHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhh
Q 016902          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (380)
Q Consensus       145 l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~  224 (380)
                      +..+=.++++++                            .+...+.+...+-++-.+.......-|+++.||++-    
T Consensus       298 i~~iRi~~~~~~----------------------------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rl----  345 (412)
T PF01306_consen  298 IMAIRIIGSGFA----------------------------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRL----  345 (412)
T ss_dssp             HHHHHHHHHHT------------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGG----
T ss_pred             HHHHHHHHHhhh----------------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhH----
Confidence            988887777765                            356778888899999999999999999999999776    


Q ss_pred             hhhhhHHHH-HHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHh
Q 016902          225 THLDRFFNF-FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (380)
Q Consensus       225 ~~r~~~~~~-~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~~  278 (380)
                        .++.+.+ ++++..+|..+.+.++|++.|+.|++.+|++.+++.++..++-.+
T Consensus       346 --sAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f  398 (412)
T PF01306_consen  346 --SATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAF  398 (412)
T ss_dssp             --HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHhee
Confidence              6777777 578889999999999999999999999998877766555544333

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.65  E-value=3e-07  Score=88.90  Aligned_cols=138  Identities=11%  Similarity=-0.002  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 016902           72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT  151 (380)
Q Consensus        72 ~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~  151 (380)
                      +.+.+..++.....+++..+++.|+++.+|++..+++.......+...++.+++|+++||+ |||+.+..+..+..++..
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~  306 (366)
T TIGR00886       228 WILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRL-GGARKLLMSFLGVAMGAF  306 (366)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhh-ccchhHHHHHHHHHHHHH
Confidence            3444444444555667778889999999999999999888888888899999999999998 999888777766666655


Q ss_pred             HHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHH
Q 016902          152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF  231 (380)
Q Consensus       152 ~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~  231 (380)
                      ++.+...     ++                   .+...+++..++.+++.|...+...+..++.++ ++      ++...
T Consensus       307 ~~~~~~~-----~~-------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~------~g~~~  355 (366)
T TIGR00886       307 LVVLGLV-----SP-------------------LSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RA------TGAVS  355 (366)
T ss_pred             HHHhcCC-----Cc-------------------chHHHHHHHHHHHHHHhccccchhhhcchhhch-hh------cccHH
Confidence            5544210     00                   034444555556666666666677778888886 34      78888


Q ss_pred             HHHHHHHHHH
Q 016902          232 NFFYLSVTVG  241 (380)
Q Consensus       232 ~~~~~~~~iG  241 (380)
                      ++++...++|
T Consensus       356 g~~~~~~~~g  365 (366)
T TIGR00886       356 GLVGAIGNLG  365 (366)
T ss_pred             HHHHHhccCC
Confidence            8877666654

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.65  E-value=7.3e-06  Score=80.47  Aligned_cols=139  Identities=12%  Similarity=-0.071  Sum_probs=93.1

Q ss_pred             HHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCc
Q 016902           89 SVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDN  168 (380)
Q Consensus        89 ~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~~~  168 (380)
                      ....+.|+++.+|++..+.+........+..++.++.+++.|++ ||..  ..+.....++.+++.+....    ..   
T Consensus       227 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~----~~---  296 (394)
T PRK11652        227 EACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STLM--WQSVICCLLAGLLMWIPGWF----GV---  296 (394)
T ss_pred             HHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHHHHHHHHHHHHHHHh----cc---
Confidence            34456678777999998888877777777777888888888887 6332  22222233332222221100    00   


Q ss_pred             ccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 016902          169 CDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL  248 (380)
Q Consensus       169 c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i  248 (380)
                                      .+...++++..+.++|.+...+....+..|.+|+ +      ++...++++...++|..+++.+
T Consensus       297 ----------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~------~g~~~~~~~~~~~lg~~~~~~~  353 (394)
T PRK11652        297 ----------------MNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPY-L------AGTAGALLGGLQNIGSGLAALL  353 (394)
T ss_pred             ----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-c------chHHHHHHHHHHHHHHHHHHHH
Confidence                            1334456667788888888888888888888873 3      6788888888889999999999


Q ss_pred             HHHhhhcchhhH
Q 016902          249 VVYIQMEHGWGS  260 (380)
Q Consensus       249 ~~~i~~~~gw~~  260 (380)
                      .+++.....+..
T Consensus       354 ~~~~~~~~~~~~  365 (394)
T PRK11652        354 SAMLPQTGQFSL  365 (394)
T ss_pred             HHHccCCchHHH
Confidence            888876544443

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.61  E-value=1e-05  Score=80.15  Aligned_cols=173  Identities=9%  Similarity=0.011  Sum_probs=121.5

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhh
Q 016902           77 NEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLC  156 (380)
Q Consensus        77 ~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~  156 (380)
                      ..++...+.-.+.++...|+++.-+.+....+...++-.+.-...-.+.+++-.|+ |-+++++++.+.+.+=..+.+..
T Consensus       215 ~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~-g~~~ll~~a~~~~~vR~~l~a~~  293 (400)
T PF03825_consen  215 AAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRF-GIKWLLLLALVAYAVRWLLYAYF  293 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHh
Confidence            33444444444556778888765547766666666666666667777888999997 99999999999888877766653


Q ss_pred             hhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHH
Q 016902          157 ATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL  236 (380)
Q Consensus       157 ~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~  236 (380)
                      ..     |.                  .........+..+.|+..|........|+.+..|++.      |+++.++|..
T Consensus       294 ~~-----~~------------------~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~------~at~Q~l~~~  344 (400)
T PF03825_consen  294 SD-----PW------------------PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPEL------RATAQGLYSA  344 (400)
T ss_pred             cC-----Cc------------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccc------hHHHHHHHHH
Confidence            11     00                  0111223334456899999999999999999999988      9999999765


Q ss_pred             -HHHHHHHHHHHHHHHhhhcchhh------HHHHHHHHHHHHHHHHHHhh
Q 016902          237 -SVTVGAIVAFTLVVYIQMEHGWG------SAFGALAIAMGISNMLFFIG  279 (380)
Q Consensus       237 -~~~iG~~i~~~i~~~i~~~~gw~------~~f~i~~~~~~~~~i~~~~~  279 (380)
                       ...+|..+|..++|++.+.+|-+      ..+.+++++.++..+++++.
T Consensus       345 ~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~  394 (400)
T PF03825_consen  345 LSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVIL  394 (400)
T ss_pred             HHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence             45799999999999999877633      34455555555555555544

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.59  E-value=3.6e-06  Score=85.27  Aligned_cols=187  Identities=11%  Similarity=0.084  Sum_probs=117.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHH----HHHHHHHHHHHHHHHHHH----HHHHHHhhcchhHH--HH
Q 016902           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFAD----SSNAVNNFLGISQASSVL----GGFLADAYLGRYWT--IA  140 (380)
Q Consensus        71 ~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~----a~~~~~~~~~~~~~~~l~----~g~lsD~~~GR~~~--i~  140 (380)
                      +..+++..++..+.+.-..+.++.|..+..+.+...    .+++.++-.+...+..++    ..++.+|..+.+..  +.
T Consensus       274 ~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~  353 (475)
T TIGR00924       274 YIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFT  353 (475)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHH
Confidence            333333334444555455566777776665543211    223333222222222222    22444431122333  36


Q ss_pred             HHHHHHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCC
Q 016902          141 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS  220 (380)
Q Consensus       141 i~~~l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~  220 (380)
                      ++.++..++++.+++......                   .....+..++++..++.++|.....|...++.+++.|++.
T Consensus       354 ~G~~l~~~~~~~~~~~~~~~~-------------------~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~  414 (475)
T TIGR00924       354 LGMLFCGASFLTFAASIWFAD-------------------AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRL  414 (475)
T ss_pred             HHHHHHHHHHHHHHHHHhhcC-------------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH
Confidence            778888888777765421100                   0001467788889999999999999999999999999887


Q ss_pred             chhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHhhccc
Q 016902          221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL  282 (380)
Q Consensus       221 ~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~  282 (380)
                            |+.++++++.+..+|..+++.+.....+..+|...|...++++++..++++...|.
T Consensus       415 ------~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  470 (475)
T TIGR00924       415 ------MGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVPW  470 (475)
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence                  99999999999999999998888877666678878877776666665555554443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.58  E-value=7.5e-06  Score=75.48  Aligned_cols=153  Identities=12%  Similarity=0.094  Sum_probs=102.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 016902           68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL  147 (380)
Q Consensus        68 ~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~  147 (380)
                      |-.....+.+..+. -+.|.+. .....+.+.+|++..+...+...-.++.+++ ++.|.+.|++ |.+.+++++.+...
T Consensus         2 W~~l~a~~~v~~~~-Gt~Y~Fs-~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~-gp~~~l~iG~~~~~   77 (250)
T PF06813_consen    2 WLSLVASIWVQLCS-GTTYTFS-AYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRF-GPWVVLLIGAVLGF   77 (250)
T ss_pred             hhhHHHHHHHHHhc-Ccccchh-hhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhc-chHHHHHHHHHHHH
Confidence            44444444444333 2334343 3456788999999999999998888888875 7889999998 99999999999999


Q ss_pred             HHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhh
Q 016902          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (380)
Q Consensus       148 lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r  227 (380)
                      +|+.++.++..-. +                    .....+.+.+..++.+.|.+.............||+ +      |
T Consensus        78 ~GY~~~~l~~~~~-i--------------------~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~------R  129 (250)
T PF06813_consen   78 VGYGLLWLAVSGR-I--------------------PSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S------R  129 (250)
T ss_pred             HHHHHHHHHHhCc-c--------------------CccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c------c
Confidence            9999888753200 0                    002344555555555566555555555566688984 5      8


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHh
Q 016902          228 DRFFNFFYLSVTVGAIVAFTLVVYI  252 (380)
Q Consensus       228 ~~~~~~~~~~~~iG~~i~~~i~~~i  252 (380)
                      |...++.-....+++.+-..+...+
T Consensus       130 G~vvgilk~~~GLSaai~t~i~~~~  154 (250)
T PF06813_consen  130 GTVVGILKGFFGLSAAIFTQIYSAF  154 (250)
T ss_pred             CceehhhhHHHHhHHHHHHHHHHHH
Confidence            8888885555555555544443333

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.52  E-value=3.2e-05  Score=76.60  Aligned_cols=115  Identities=11%  Similarity=0.024  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 016902           74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI  153 (380)
Q Consensus        74 i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l  153 (380)
                      +....++.-+.+-...++++.|+.+ .|++..+.+.+.++..+...+.++++|+++||+..+++.+.+..++..+.+...
T Consensus         7 Ls~~~f~~f~~~G~~~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~   85 (400)
T PF03825_consen    7 LSLMYFLYFFAYGAFLPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLL   85 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHH
Confidence            3444455445554566778889975 679999999999999999999999999999998446777766655555443333


Q ss_pred             HhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCC
Q 016902          154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD  217 (380)
Q Consensus       154 ~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~  217 (380)
                      ...                            .+...+++..++..+......|..-++.-+...
T Consensus        86 ~~~----------------------------~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~  121 (400)
T PF03825_consen   86 AFS----------------------------SSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG  121 (400)
T ss_pred             HHh----------------------------ccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            322                            234445555556666666666666665555554

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.45  E-value=2.6e-05  Score=75.96  Aligned_cols=165  Identities=16%  Similarity=0.134  Sum_probs=131.9

Q ss_pred             HHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcc
Q 016902           81 ERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMK  160 (380)
Q Consensus        81 ~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~  160 (380)
                      ..++++.=-..+=+|--+.||++..+.+.+...+.++..++-.+.|++..+..|.+++..+++.+..+++.++.++... 
T Consensus       220 ~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~-  298 (403)
T PF03209_consen  220 GTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPL-  298 (403)
T ss_pred             HHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhc-
Confidence            3444443334456788889999999999999999999999999999988866799999999999999998888776431 


Q ss_pred             cCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHH
Q 016902          161 VFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV  240 (380)
Q Consensus       161 ~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~i  240 (380)
                                              .+...+..+.+++|+|.|.+.....+..-|+..++.      .+.+++.|-....+
T Consensus       299 ------------------------~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~------aG~~mG~WGaaQA~  348 (403)
T PF03209_consen  299 ------------------------GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGR------AGLFMGAWGAAQAI  348 (403)
T ss_pred             ------------------------ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcc------hhHHHHHHHHHHHH
Confidence                                    246678899999999999999888888899988776      78999999998888


Q ss_pred             HHHHHHHHHHHhhhc----------chhhHHHHHHHHHHHHHHHHH
Q 016902          241 GAIVAFTLVVYIQME----------HGWGSAFGALAIAMGISNMLF  276 (380)
Q Consensus       241 G~~i~~~i~~~i~~~----------~gw~~~f~i~~~~~~~~~i~~  276 (380)
                      +..++..+++.+.|-          .+|...|.+-++.+++++++.
T Consensus       349 A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll  394 (403)
T PF03209_consen  349 ARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLL  394 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            888888877766442          347777777777776666554

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.43  E-value=2.7e-05  Score=71.29  Aligned_cols=144  Identities=22%  Similarity=0.274  Sum_probs=103.5

Q ss_pred             HHHHHhcCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccc
Q 016902           94 TFMFYVMHKSF--ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR  171 (380)
Q Consensus        94 ~yl~~~~~~s~--~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~~~c~~  171 (380)
                      ..+...++.+.  ...+...+.+.....++.++.|.++|++ |||+.++.+...+.++.+++.+...             
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~-------------   91 (338)
T COG0477          26 PLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-GRRKVLIIGLLLFLLGTLLLALAPN-------------   91 (338)
T ss_pred             HHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-cchHHHHHHHHHHHHHHHHHHhCcc-------------
Confidence            33444555554  4678888888888888889999999998 9998888887765555444444210             


Q ss_pred             cccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHH-HHHHHHHHHHHHHH
Q 016902          172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL-SVTVGAIVAFTLVV  250 (380)
Q Consensus       172 ~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~-~~~iG~~i~~~i~~  250 (380)
                                   .....+++.+++.|++.+...+...++.+|.++. .    ..|+...+.+.. ...+|..+++.+++
T Consensus        92 -------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (338)
T COG0477          92 -------------VGLALLLILRLLQGLGGGGLLPVASALLSEWFPE-A----TERGLAVGLVTLGAGALGLALGPLLAG  153 (338)
T ss_pred             -------------chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc-h----hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         1356677788888999998999999999999987 1    227888887666 57777788876666


Q ss_pred             Hhhhc--chhhHHHHHHHHHH
Q 016902          251 YIQME--HGWGSAFGALAIAM  269 (380)
Q Consensus       251 ~i~~~--~gw~~~f~i~~~~~  269 (380)
                      ++...  .+|++.|.+.....
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~  174 (338)
T COG0477         154 LLLGALLWGWRAAFLLAALLG  174 (338)
T ss_pred             HHHHHHhcchHHHHHHHHHHH
Confidence            65543  56888666555444

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=98.42  E-value=3.2e-08  Score=101.36  Aligned_cols=204  Identities=15%  Similarity=0.112  Sum_probs=2.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 016902           73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG  152 (380)
Q Consensus        73 ~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~  152 (380)
                      ++.+..+++ +..+++.....+-+.++|+++.++++.+.+.+-++..+..++..++.++. -|-|.+-++.++..+|.++
T Consensus         7 ~~~~~~~~q-~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~~~g~~l   84 (539)
T PF03137_consen    7 FLCLLGLFQ-MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLMGLGSLL   84 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHHHHHHHH
Confidence            334444555 66667777777889999999999999999999999999999999999985 6677888889999999988


Q ss_pred             HHhhhhccc-CCCC------------CCcccc-----cccccCCCC---C-CcchhHHHHHHHHHHHHHhccchhhhhhh
Q 016902          153 ITLCATMKV-FMPN------------QDNCDR-----ISQLLGSCE---P-AKSWQMLYLYTVLYITGFGAAGIRPCVSS  210 (380)
Q Consensus       153 l~l~~~~~~-l~~~------------~~~c~~-----~~~~~~~c~---~-~~~~~~~~l~~~l~l~g~g~g~~~~~~~~  210 (380)
                      +++-..+.. ..+.            ...|..     .....+.|.   . ....-..+++++.++.|+|.....+...+
T Consensus        85 ~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~t  164 (539)
T PF03137_consen   85 FALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGIT  164 (539)
T ss_dssp             -------------------------------------------------------------------SSS----------
T ss_pred             HhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceee
Confidence            887433211 0000            001200     000000111   1 11123466778889999999988898889


Q ss_pred             HhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh---------------------cch-hhHHHHHHHHH
Q 016902          211 FGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM---------------------EHG-WGSAFGALAIA  268 (380)
Q Consensus       211 ~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~---------------------~~g-w~~~f~i~~~~  268 (380)
                      |+=|-.+++.      -..++++++....+|+++|.++++....                     .+| |+.+|.+.+++
T Consensus       165 YiDDnv~~~~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~  238 (539)
T PF03137_consen  165 YIDDNVSKKN------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGIL  238 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eecccccccc------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHH
Confidence            9888877766      6788889999999999999888765421                     034 89999988888


Q ss_pred             HHHHHHHHHhhccccc
Q 016902          269 MGISNMLFFIGTPLYR  284 (380)
Q Consensus       269 ~~~~~i~~~~~~~~~~  284 (380)
                      .++..+.++...|...
T Consensus       239 ~~l~aipl~~FPk~lp  254 (539)
T PF03137_consen  239 LFLSAIPLFFFPKKLP  254 (539)
T ss_dssp             ----------------
T ss_pred             HHHHHHHHHcCCccCC
Confidence            7777666666555443

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.41  E-value=3.6e-06  Score=87.47  Aligned_cols=200  Identities=14%  Similarity=0.125  Sum_probs=141.3

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhh
Q 016902           77 NEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLC  156 (380)
Q Consensus        77 ~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~  156 (380)
                      ..+...+.. ++....++-+.+.|+++..+.+++.+.+-++..+..++..+..-|. =|-+.|-++.+++.+|.+++++-
T Consensus       105 ~~~~q~l~~-~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-HrPr~Ig~G~~~m~lgsll~alP  182 (735)
T KOG3626|consen  105 AAFAQGLYV-GYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-HRPRWIGIGLVLMGLGSLLFALP  182 (735)
T ss_pred             HHHHHHhhh-hhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-CccceeeechhHHHHHHHHHhCh
Confidence            344444444 7777788889999999999999999999999999999999998886 67778888999999999988874


Q ss_pred             hhccc-CC--------CCCCc------c--ccccc----ccCCCC--CCcch-hHHHHHHHHHHHHHhccchhhhhhhHh
Q 016902          157 ATMKV-FM--------PNQDN------C--DRISQ----LLGSCE--PAKSW-QMLYLYTVLYITGFGAAGIRPCVSSFG  212 (380)
Q Consensus       157 ~~~~~-l~--------~~~~~------c--~~~~~----~~~~c~--~~~~~-~~~~l~~~l~l~g~g~g~~~~~~~~~~  212 (380)
                      ..+.. ..        +.+.+      |  ....+    ..+.|.  ..+.. -+.+++++.++.|+|..-+.+.-.+|+
T Consensus       183 Hf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYi  262 (735)
T KOG3626|consen  183 HFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYI  262 (735)
T ss_pred             HHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccc
Confidence            22100 00        00000      1  00000    011222  12222 344677888999999888888877877


Q ss_pred             hccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh------------------cch-hhHHHHHHHHHHHHHH
Q 016902          213 ADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM------------------EHG-WGSAFGALAIAMGISN  273 (380)
Q Consensus       213 ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~------------------~~g-w~~~f~i~~~~~~~~~  273 (380)
                      =|-...++      -..++++++....+|+++|.+++++...                  .+| |+.+|++++++.+++.
T Consensus       263 DDnvk~~~------SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a  336 (735)
T KOG3626|consen  263 DDNVKKKN------SPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSA  336 (735)
T ss_pred             cccccccC------CcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence            66665555      6788899999999999999998887532                  134 8999999999988888


Q ss_pred             HHHHhhccccc
Q 016902          274 MLFFIGTPLYR  284 (380)
Q Consensus       274 i~~~~~~~~~~  284 (380)
                      +.+++..+.+.
T Consensus       337 ~p~f~fPk~lp  347 (735)
T KOG3626|consen  337 VPLFFFPKELP  347 (735)
T ss_pred             HHHHhCcccCc
Confidence            87777665544

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.40  E-value=5.8e-05  Score=75.00  Aligned_cols=167  Identities=12%  Similarity=0.048  Sum_probs=102.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 016902           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (380)
Q Consensus        71 ~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~  150 (380)
                      ++...+..++....+++....+|.|+++.+|++..+.+.......++..++..+.+.+.++. ++++.+.....+..+|.
T Consensus       220 ~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~~~ig~  298 (413)
T PRK15403        220 FLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP-TEPRFIWRAVPIQLVGL  298 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CchhHHHHHHHHHHHHH
Confidence            44444445555666666667778899999999999988887767777777777777665444 44444444444555555


Q ss_pred             HHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhH
Q 016902          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (380)
Q Consensus       151 ~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~  230 (380)
                      +++.+....   .+                    .....++++.++.++|.+...++.....-  .+.+.+     +++.
T Consensus       299 ~l~~~~~~~---~~--------------------~~~~~~~~~~~l~~~G~~~~~p~~~~~al--~~~~~~-----~G~a  348 (413)
T PRK15403        299 ALLIVGNLL---WP--------------------HVWLWSVLGTSLYAFGIGLIFPTLFRFTL--FSNNLP-----KGTV  348 (413)
T ss_pred             HHHHHHHHH---cc--------------------ccHHHHHHHHHHHHHHHHHHhHHHHHHHh--ccCCCC-----CcHH
Confidence            554433110   01                    12333566777788888888777775332  222211     5666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHH
Q 016902          231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAM  269 (380)
Q Consensus       231 ~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~  269 (380)
                      .+.+......+..+++.+.+++..+ +-.++|.+..++.
T Consensus       349 ~a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~  386 (413)
T PRK15403        349 SASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVA  386 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHH
Confidence            6666666667777777888888654 4455665444443

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.39  E-value=1.1e-05  Score=80.90  Aligned_cols=159  Identities=14%  Similarity=0.047  Sum_probs=114.2

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cc--hhHHHHHHHHHHHHHHHHHHhhhhcccCCCCCC
Q 016902           92 MVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY--LG--RYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD  167 (380)
Q Consensus        92 l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~--~G--R~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~~  167 (380)
                      ...|+.+++|+++++.....++..+-..+ -++.|.++|.+  +|  ||+-++++.++..++.+.+++...   .     
T Consensus        12 ~~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~---~-----   82 (433)
T PF03092_consen   12 IYPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPA---S-----   82 (433)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccc---c-----
Confidence            44678899999999988777766666655 45779999976  44  445555676666555555544211   0     


Q ss_pred             cccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHH
Q 016902          168 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT  247 (380)
Q Consensus       168 ~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~  247 (380)
                                      ..+.....+.+++..+|......+.-+..+|....+...    ++...++.+....+|++++..
T Consensus        83 ----------------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~----~g~lqS~~~~~~~~G~lv~~~  142 (433)
T PF03092_consen   83 ----------------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES----RGDLQSFVWGVRSVGSLVGSL  142 (433)
T ss_pred             ----------------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch----hHHHHHHHHHHHHHHHHHHHH
Confidence                            012344555667788999999999999999988655422    777888888899999999999


Q ss_pred             HHHHhhhcchhhHHHHHHHHHHHHHHHHHHhh
Q 016902          248 LVVYIQMEHGWGSAFGALAIAMGISNMLFFIG  279 (380)
Q Consensus       248 i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~~~  279 (380)
                      +.|++.+..++++.|.+.+++..+..+..+..
T Consensus       143 l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~  174 (433)
T PF03092_consen  143 LSGPLLDSFGPQGVFLISAALPLLMLIVALFL  174 (433)
T ss_pred             hhhhhhhcCCCeEEehHHHHHHHHHHHHHHHh
Confidence            99999998899999988877766554443333

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.36  E-value=2.1e-05  Score=80.02  Aligned_cols=177  Identities=8%  Similarity=0.042  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHHhHHHHHHHhcCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhH-------HHHHHHHHHHH
Q 016902           80 AERMAYFGLSVNMVTFMFYVMHKSFA----DSSNAVNNFLGISQASSVLGGFLADAYLGRYW-------TIAIFTTIYLA  148 (380)
Q Consensus        80 ~~~~~~~~i~~~l~~yl~~~~~~s~~----~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~-------~i~i~~~l~~l  148 (380)
                      +....+......++.|+++..+.+..    ..+.+.+...+...+..++.|.+.||+ |||+       -+.++.++..+
T Consensus       280 ~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl-~~r~~~~~~~~k~~~G~~l~~~  358 (489)
T PRK10207        280 VFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHL-GSKGKDLSMPMKFTLGMFLCSL  358 (489)
T ss_pred             HHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHH-hhCCCCCCcHHHHHHHHHHHHH
Confidence            33344444546677777654333211    122333333334445566678999997 9886       36677777777


Q ss_pred             HHHHHHhhhh-cccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhh
Q 016902          149 GLTGITLCAT-MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (380)
Q Consensus       149 g~~~l~l~~~-~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r  227 (380)
                      +++.+++... .....                   ...+..++....++.++|.+...+....+..+..|++.      +
T Consensus       359 ~~~~~~~~~~~~~~~~-------------------~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~------~  413 (489)
T PRK10207        359 GFLTAAAAGMWFADAQ-------------------GLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHL------M  413 (489)
T ss_pred             HHHHHHHHHHhhcCCC-------------------CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHH------H
Confidence            7665543211 00000                   01245566677788999999999999999999999877      8


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhh----------cchhhHHHHHHHHHHHHHHHHHHhhccc
Q 016902          228 DRFFNFFYLSVTVGAIVAFTLVVYIQM----------EHGWGSAFGALAIAMGISNMLFFIGTPL  282 (380)
Q Consensus       228 ~~~~~~~~~~~~iG~~i~~~i~~~i~~----------~~gw~~~f~i~~~~~~~~~i~~~~~~~~  282 (380)
                      +...+.+++...+|..++..+..+...          .-.+.+.|...++..++..++++...|+
T Consensus       414 g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~~~~  478 (489)
T PRK10207        414 GFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALMVPW  478 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998877765521          1124566665555555555555444443

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.31  E-value=1.6e-05  Score=79.87  Aligned_cols=158  Identities=15%  Similarity=0.075  Sum_probs=112.4

Q ss_pred             HHhHHHHHHHhcCCCHHHH-HHHHHHH----HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCC
Q 016902           89 SVNMVTFMFYVMHKSFADS-SNAVNNF----LGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFM  163 (380)
Q Consensus        89 ~~~l~~yl~~~~~~s~~~a-~~~~~~~----~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~  163 (380)
                      ..+...+....++.+.... .......    .....+..++.|.++|+| |||..+.+..+..++..+.+.+.       
T Consensus        41 ~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~-grk~~L~~~~~~~~l~~~~~~~~-------  112 (463)
T KOG2816|consen   41 MTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRY-GRKVVLLLPLFGTILPALCLLFQ-------  112 (463)
T ss_pred             hhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhh-hhhhhHHHHHHHHHHhHHHHHHH-------
Confidence            3556666666655543322 2222222    456667778889999998 99999999988888877776653       


Q ss_pred             CCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHH
Q 016902          164 PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAI  243 (380)
Q Consensus       164 ~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~  243 (380)
                                             ..++++ +.-..-|.+...+...++++|....+.      |...+++.+.+...+..
T Consensus       113 -----------------------~~~~~~-~~~l~g~~~~~~s~~~a~vadis~~~~------R~~~~gll~~~~~~~~~  162 (463)
T KOG2816|consen  113 -----------------------GYWFFL-LLGLSGGFSAIFSVGFAYVADISSEEE------RSSSIGLLSGTFGAGLV  162 (463)
T ss_pred             -----------------------HHHHhh-hcccccchhhhhhhhhhheeeccchhH------HHHHHHHHHHHHHHHHh
Confidence                                   122222 111122334455677888999988877      99999999998899999


Q ss_pred             HHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHhhccccc
Q 016902          244 VAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYR  284 (380)
Q Consensus       244 i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~~~  284 (380)
                      ++|.+++++....|....|.+.++..+++.+......++-.
T Consensus       163 ~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl  203 (463)
T KOG2816|consen  163 IGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESL  203 (463)
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccccc
Confidence            99999999999899999999998888888776666555433

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.31  E-value=5.7e-05  Score=73.59  Aligned_cols=141  Identities=13%  Similarity=0.009  Sum_probs=96.7

Q ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----hhHHHH-HHHHHHHHHHHHHHhhhhcccCCCCCCccc
Q 016902           97 FYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLG-----RYWTIA-IFTTIYLAGLTGITLCATMKVFMPNQDNCD  170 (380)
Q Consensus        97 ~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~G-----R~~~i~-i~~~l~~lg~~~l~l~~~~~~l~~~~~~c~  170 (380)
                      ..+++++..-.+..+.+..+...+ .+..|+.||+. +     ||..++ .+.++...|..+...+...-.  ..     
T Consensus         7 IvEL~vpA~lv~~lval~~~~ap~-R~~~G~~SD~~-~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~--~~-----   77 (403)
T PF03209_consen    7 IVELGVPAWLVALLVALHYLVAPL-RVWFGHRSDTH-PSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLA--ES-----   77 (403)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHH-HHHhccccccC-cccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHc--cc-----
Confidence            457888888888888887777764 67889999987 7     665554 455566666555554332110  00     


Q ss_pred             ccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 016902          171 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV  250 (380)
Q Consensus       171 ~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~  250 (380)
                           .+....+...-.....++..++|+|.+....+..++.+|..|+++      |++..++.+....+|..++..+.+
T Consensus        78 -----~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~------R~~~v~ivw~Mli~G~iv~ai~~g  146 (403)
T PF03209_consen   78 -----GQQSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER------RPRVVAIVWVMLIVGIIVSAIVFG  146 (403)
T ss_pred             -----ccccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh------hhhhHHHHHHHHHHHHHHHHHHHH
Confidence                 000011111122334445567888888889999999999999888      999999988888899999999888


Q ss_pred             Hhhhcch
Q 016902          251 YIQMEHG  257 (380)
Q Consensus       251 ~i~~~~g  257 (380)
                      .+.+.++
T Consensus       147 ~lL~~~s  153 (403)
T PF03209_consen  147 RLLDPFS  153 (403)
T ss_pred             HHccccC
Confidence            7766554

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.31  E-value=5.4e-05  Score=77.26  Aligned_cols=131  Identities=15%  Similarity=0.164  Sum_probs=90.1

Q ss_pred             HHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchh
Q 016902          126 GFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIR  205 (380)
Q Consensus       126 g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~  205 (380)
                      +++.+|+ +..+.+.++.++..+|++++.+......      .          |.   ..+..++....++.++|.+...
T Consensus       341 ~~l~~r~-~~~~~~~~G~~l~~l~f~~l~~~~~~~~------~----------~~---~vs~~~~~~~~~l~~~ge~~~~  400 (500)
T PRK09584        341 NKMGDRL-PMPHKFAIGMVLCSGAFLVLPLGAKFAN------D----------AG---IVSVNWLIASYGLQSIGELMIS  400 (500)
T ss_pred             HHhCcCC-CcHHHHHHHHHHHHHHHHHHHHHHHhcC------C----------CC---ccCHHHHHHHHHHHHHHHHHHh
Confidence            4455554 5667788888888888888776532110      0          00   1345567888899999999999


Q ss_pred             hhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh----------cchhhHHHHHHHHHHHHHHHH
Q 016902          206 PCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM----------EHGWGSAFGALAIAMGISNML  275 (380)
Q Consensus       206 ~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~----------~~gw~~~f~i~~~~~~~~~i~  275 (380)
                      |...++..+..|++.      |+..++.|+++..+|+.++..+..+...          ..++.+.|...+++.++..++
T Consensus       401 p~g~s~~~~~aP~~~------rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~  474 (500)
T PRK09584        401 GLGLAMVAQLVPQRL------MGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVL  474 (500)
T ss_pred             HHHHHHHHHhCcHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence            999999999999887      9999999998888888887766653321          113567777666655544444


Q ss_pred             HHhhccc
Q 016902          276 FFIGTPL  282 (380)
Q Consensus       276 ~~~~~~~  282 (380)
                      ++...++
T Consensus       475 ~~~~~~~  481 (500)
T PRK09584        475 MLLTAPK  481 (500)
T ss_pred             HHHHHHH
Confidence            4443333

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.25  E-value=4.7e-05  Score=74.69  Aligned_cols=164  Identities=12%  Similarity=0.034  Sum_probs=103.6

Q ss_pred             CcccCCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHH
Q 016902           61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA  140 (380)
Q Consensus        61 ~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~  140 (380)
                      .+.-+++|-.++...+..+...+....+ +....|....++ +...+.+...+|+.++....+.+-|+.|++ |=|.+.+
T Consensus        37 ~rVy~rRW~vLl~~slL~~SN~~qWI~y-a~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~-GLR~a~l  113 (480)
T KOG2563|consen   37 HRVYPRRWVVLLAFSLLNFSNGMQWIQY-APINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKF-GLRTALL  113 (480)
T ss_pred             cccchhHhHHHHHHHHHHhcCcchheee-hhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhccc-chHHHHH
Confidence            3455566665555555555443333222 234567777788 666777888899999999999999999998 9999999


Q ss_pred             HHHHHHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCC
Q 016902          141 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS  220 (380)
Q Consensus       141 i~~~l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~  220 (380)
                      ++..+..+|..+=.++.. |.+.+.                   .-..+..+|-.+.+...-.+...-.-.-+-.|++++
T Consensus       114 lgt~ln~iGa~Ir~iss~-p~v~~~-------------------f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~q  173 (480)
T KOG2563|consen  114 LGTVLNGIGAWIRLISSL-PFVPPL-------------------FRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQ  173 (480)
T ss_pred             HHHHHHHHHHHHhhhccC-cccccc-------------------chhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcch
Confidence            999999999888766532 211111                   011234455555555443333222223345678766


Q ss_pred             chhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 016902          221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ  253 (380)
Q Consensus       221 ~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~  253 (380)
                            |..+...-.++.-+|..++.++...+.
T Consensus       174 ------ra~A~~~~v~~n~LGvavg~llppilV  200 (480)
T KOG2563|consen  174 ------RAIATVLGVMGNPLGVAVGFLLPPILV  200 (480)
T ss_pred             ------hhhhhhHHHhcchHHHHHHhhccceec
Confidence                  888877766666666666655554443

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.25  E-value=7.4e-05  Score=72.44  Aligned_cols=156  Identities=13%  Similarity=0.079  Sum_probs=112.3

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHh
Q 016902           76 GNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITL  155 (380)
Q Consensus        76 ~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l  155 (380)
                      +..|+-.-+-..+.+++++|+.+..|++..+++..++.+.++..+|-.++-++-.++ -..|.+.+..++..+-.+...+
T Consensus       243 l~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~-~~~k~Laf~a~~~ill~~~~~l  321 (422)
T COG0738         243 LAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRI-KPEKYLAFYALIAILLLLAVAL  321 (422)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHH
Confidence            333433333344667899999988999999999999999999999999999988887 7777777666554443333333


Q ss_pred             hhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHH
Q 016902          156 CATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY  235 (380)
Q Consensus       156 ~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~  235 (380)
                      .                            .+ ..-+.+++++|+..+.+.|.+.+..-+.++++.+     .++.   .-
T Consensus       322 ~----------------------------~g-~v~~~~l~~ig~F~simfPTIfslal~~l~~~ts-----~~s~---~l  364 (422)
T COG0738         322 I----------------------------GG-VVALYALFLIGLFNSIMFPTIFSLALKNLGEHTS-----VGSG---LL  364 (422)
T ss_pred             h----------------------------cC-hHHHHHHHHHHHHhHHHHHHHHHHHHhccCcccc-----ccce---ee
Confidence            2                            11 2234456788999999999999999999995442     3332   23


Q ss_pred             HHHHHHHHHHHHHHHHhhhcchhhHHHH-HHHHHH
Q 016902          236 LSVTVGAIVAFTLVVYIQMEHGWGSAFG-ALAIAM  269 (380)
Q Consensus       236 ~~~~iG~~i~~~i~~~i~~~~gw~~~f~-i~~~~~  269 (380)
                      ....+|+.+-|.+.|++.|..|-...+. ++..|.
T Consensus       365 ~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~  399 (422)
T COG0738         365 VMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCY  399 (422)
T ss_pred             eeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            3456888999999999999988776665 444443

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.23  E-value=1.3e-05  Score=81.22  Aligned_cols=162  Identities=13%  Similarity=0.121  Sum_probs=104.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cchhHHHHHHHHHH
Q 016902           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWTIAIFTTIY  146 (380)
Q Consensus        70 ~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~---~GR~~~i~i~~~l~  146 (380)
                      .+|...+..++.....|++..+++.|+.+..|++..++.++...+.++..++.++.|+++||.   ..++..+..+..++
T Consensus       274 ~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~  353 (495)
T KOG2533|consen  274 GVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLY  353 (495)
T ss_pred             hHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            367788888889999999999999999987789999999999999999999999999999993   26666555554443


Q ss_pred             H-HHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhh
Q 016902          147 L-AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (380)
Q Consensus       147 ~-lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~  225 (380)
                      . +|.+.+....                            .....+.+.+....+.+...++......+......     
T Consensus       354 ~~~g~~~l~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~-----  400 (495)
T KOG2533|consen  354 AIIGAISLLAAA----------------------------VLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNT-----  400 (495)
T ss_pred             HHHHHHHHHhhc----------------------------cchHHhHHHHhcchhhHHHHHHHHhhccccccchH-----
Confidence            3 3333333221                            11222223333334444444555555555554333     


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHH-HHHhhhcchhhHHHHH
Q 016902          226 HLDRFFNFFYLSVTVGAIVAFTL-VVYIQMEHGWGSAFGA  264 (380)
Q Consensus       226 ~r~~~~~~~~~~~~iG~~i~~~i-~~~i~~~~gw~~~f~i  264 (380)
                      ++-+..+.+..+.+.++++++.+ .+.....++|.+.|.+
T Consensus       401 k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~  440 (495)
T KOG2533|consen  401 KALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYM  440 (495)
T ss_pred             HhHHHHhhhhcchhHHHHhhhhhcccccCcchhhhhHHHH
Confidence            25555555655555555554443 3444555688888843

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.12  E-value=8.1e-06  Score=78.77  Aligned_cols=166  Identities=13%  Similarity=0.025  Sum_probs=115.7

Q ss_pred             HHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCCC
Q 016902           88 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD  167 (380)
Q Consensus        88 i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~~  167 (380)
                      .-..++.+..+.+..+.-+.+.......+.+.++..+.|.++||+ |.-+.++...-+.++|.....+-           
T Consensus       289 LePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~-~~~~wl~~~~gl~~~G~~~~~iP-----------  356 (464)
T KOG3764|consen  289 LEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKY-PHLRWLLSLGGLATVGVSSGPIP-----------  356 (464)
T ss_pred             hCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhc-CchhHHHHHHHHHHHHHHhchhH-----------
Confidence            344566777777775554677777777888899999999999998 94444433333344443222221           


Q ss_pred             cccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHH
Q 016902          168 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT  247 (380)
Q Consensus       168 ~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~  247 (380)
                      .|               .+...+++-....+++.+...+...+..+...|.++.++-..-++..++...+.++|..+||+
T Consensus       357 ~~---------------~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~  421 (464)
T KOG3764|consen  357 FA---------------TSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPT  421 (464)
T ss_pred             hh---------------hhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhcccc
Confidence            22               245567777777788888888888888888888766432113678888889999999999999


Q ss_pred             HHHHhhhcchhhHHHHHHHHHHHHHHHHHHhhc
Q 016902          248 LVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT  280 (380)
Q Consensus       248 i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~~~~  280 (380)
                      +++.+.+..|++|...+.++..++-.-++.+.+
T Consensus       422 ~gg~iv~~iGF~wl~~iig~~n~iyapvl~ll~  454 (464)
T KOG3764|consen  422 FGGSLVEAIGFEWLMTIIGILNLIYAPVLLLLR  454 (464)
T ss_pred             ccchheeehhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999987776666555544444443

>TIGR00788 fbt folate/biopterin transporter

Probab=98.09  E-value=1.6e-05  Score=80.37  Aligned_cols=136  Identities=10%  Similarity=-0.152  Sum_probs=102.9

Q ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCccccccccc
Q 016902           97 FYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL  176 (380)
Q Consensus        97 ~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~  176 (380)
                      ++.+|+++...+.......++..++..+.+.+.+++ +.|+++.++.++..++.+...+......+..   ..       
T Consensus       280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~-~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~---gi-------  348 (468)
T TIGR00788       280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTF-PYRLLFGVTTLLYTLSSLFDLILVKRWNLAF---GI-------  348 (468)
T ss_pred             cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHhCceeeeecccccc---CC-------
Confidence            457899999999999888888999999999998886 9999999999888887655432110000000   00       


Q ss_pred             CCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 016902          177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH  256 (380)
Q Consensus       177 ~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~  256 (380)
                              .....++...++.+++.+........++.+..|++.      +++.++++....++|..+++.+++++.+..
T Consensus       349 --------~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~------egt~~al~~s~~~lg~~v~~~~gg~l~~~~  414 (468)
T TIGR00788       349 --------SDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGC------ESSVFALLASILHLGSSVSGFLGVLLMETI  414 (468)
T ss_pred             --------CCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCc------eehHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence                    011223344466777777777888999999999888      899999999999999999999999998877


Q ss_pred             h
Q 016902          257 G  257 (380)
Q Consensus       257 g  257 (380)
                      |
T Consensus       415 g  415 (468)
T TIGR00788       415 G  415 (468)
T ss_pred             C
Confidence            6

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.08  E-value=0.00039  Score=70.31  Aligned_cols=205  Identities=15%  Similarity=-0.002  Sum_probs=132.4

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hcCCCHH------HH----HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016902           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFY-VMHKSFA------DS----SNAVNNFLGISQASSVLGGFLADAYL  133 (380)
Q Consensus        65 ~~~~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~-~~~~s~~------~a----~~~~~~~~~~~~~~~l~~g~lsD~~~  133 (380)
                      +.-++.++.++.++++.-++++.+..+...|+.+ .+|-++.      +.    .+....+.+...+.+++--++.+++ 
T Consensus       254 ~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~-  332 (477)
T TIGR01301       254 KYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGW-  332 (477)
T ss_pred             HHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence            3445688999999999999999888888888874 4553321      11    2333334444455566667788886 


Q ss_pred             ch-hHHHHHHHHHHHHHHHHHHhhhhccc-CCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhH
Q 016902          134 GR-YWTIAIFTTIYLAGLTGITLCATMKV-FMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSF  211 (380)
Q Consensus       134 GR-~~~i~i~~~l~~lg~~~l~l~~~~~~-l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~  211 (380)
                      |+ |++..++.++..++++...+...++. ..+.    + +   .+.--.+........++...++|+..+.....=.++
T Consensus       333 g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~----~-~---~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal  404 (477)
T TIGR01301       333 GAGKRLWGIVNIILAICLAATVLVTYVAKNSRYY----D-G---DGESLPPPTGIKASALIVFAILGIPLAITYSIPFAL  404 (477)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHhhhhccccc----c-c---cccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHH
Confidence            84 77778888888888877765432110 0000    0 0   000000111223445555667888888888888888


Q ss_pred             hhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcch--hhHHHHHHHHHHHHHHHHHHhhccc
Q 016902          212 GADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG--WGSAFGALAIAMGISNMLFFIGTPL  282 (380)
Q Consensus       212 ~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g--w~~~f~i~~~~~~~~~i~~~~~~~~  282 (380)
                      +++..+++.    ++.|..+++++.++.+...+..+..+.+.+..|  -.+.+.+.++.++++.+..+...|+
T Consensus       405 ~s~~~~~~~----~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~  473 (477)
T TIGR01301       405 ASIRSSNLG----AGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPR  473 (477)
T ss_pred             HHHHccccC----CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCC
Confidence            888888533    126999999999999999988877777655444  4567777888887777766555443

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.05  E-value=6.2e-06  Score=80.90  Aligned_cols=179  Identities=15%  Similarity=0.050  Sum_probs=121.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHH--------HHHHHHHHHHHH-HHHHHHHHHHhhcchhHHH
Q 016902           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSS--------NAVNNFLGISQA-SSVLGGFLADAYLGRYWTI  139 (380)
Q Consensus        69 ~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~--------~~~~~~~~~~~~-~~l~~g~lsD~~~GR~~~i  139 (380)
                      +..+-..+..|+--+++|+...+...-+ +.+++.+.+..        ....+...+.++ +..++.++.|+. ||++..
T Consensus       304 ~~Llgt~~~WFllDiafy~~nL~~s~I~-~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~i-GRk~iq  381 (538)
T KOG0252|consen  304 KHLLGTAGTWFLLDIAFYGQNLFQSVIF-SAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDII-GRKYIQ  381 (538)
T ss_pred             HHHHHHHHHHHhhhhhhhccccHHHHHH-HhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehh-hhHHHH
Confidence            4455566677777788887766544433 44555433222        222223333333 555667789997 999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHH-HHHHHhccchhhhhhhHhhccCCC
Q 016902          140 AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVL-YITGFGAAGIRPCVSSFGADQFDE  218 (380)
Q Consensus       140 ~i~~~l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l-~l~g~g~g~~~~~~~~~~ad~f~~  218 (380)
                      +.+.+++.+..+.++..            ++.         .   .+...+++.. +..-++.-|..+.....-+|.||.
T Consensus       382 ~~GF~~~~i~~~~~~~~------------y~~---------~---~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FPa  437 (538)
T KOG0252|consen  382 LMGFFIMTIFFFVIAGP------------YNQ---------L---ENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPA  437 (538)
T ss_pred             HhhHHHHHHHHHHHcCC------------ccc---------c---cccCceeehHHHHHHHHhcCCCceeEEeehhhchH
Confidence            99999988877776653            110         0   0111111111 223344455556666777999999


Q ss_pred             CCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh-----cchhhHHHHHHHHHHHHHHHHHHhh
Q 016902          219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-----EHGWGSAFGALAIAMGISNMLFFIG  279 (380)
Q Consensus       219 ~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~-----~~gw~~~f~i~~~~~~~~~i~~~~~  279 (380)
                      +.      |+.+.++...+.-+|+.++.+...++++     +.|.++.|++.++++.++.++.++.
T Consensus       438 rv------R~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~  497 (538)
T KOG0252|consen  438 RV------RSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLI  497 (538)
T ss_pred             HH------hhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEe
Confidence            98      9999999999999999999999999998     7889999999999998887765554

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.03  E-value=0.00021  Score=73.17  Aligned_cols=146  Identities=12%  Similarity=0.022  Sum_probs=83.1

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 016902           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (380)
Q Consensus        65 ~~~~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~  144 (380)
                      +..++.....++..++..++.+....+....+.+..|.+... .....+......++.+++.++.||+ |||+.++.+..
T Consensus       290 ~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~-gRr~lll~s~~  367 (513)
T KOG0254|consen  290 PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRF-GRRKLLLFGAA  367 (513)
T ss_pred             cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHhHH
Confidence            334555555555666655554443334444445556665433 3444445555566667778999998 99999999999


Q ss_pred             HHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhh
Q 016902          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (380)
Q Consensus       145 l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~  224 (380)
                      ...+++++++...........   +          .  .......+....+.+.....+.-+....+.+|.||.+.    
T Consensus       368 ~m~~~~~~~~~~~~~~~~~~~---~----------~--~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~----  428 (513)
T KOG0254|consen  368 GMSICLVILAVVGVFALYYPN---S----------S--KGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRL----  428 (513)
T ss_pred             HHHHHHHHHHHHHHHhccCCC---c----------c--cchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhH----
Confidence            999999888875331110000   0          0  00111122222222233333444555568899999887    


Q ss_pred             hhhhhHHHH
Q 016902          225 THLDRFFNF  233 (380)
Q Consensus       225 ~~r~~~~~~  233 (380)
                        |+.+.++
T Consensus       429 --r~~~~s~  435 (513)
T KOG0254|consen  429 --RSKGASL  435 (513)
T ss_pred             --HhhhHHH
Confidence              6666665

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.00  E-value=0.0013  Score=66.67  Aligned_cols=173  Identities=14%  Similarity=0.052  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHH-HHHHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchh
Q 016902          108 SNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIF-TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQ  186 (380)
Q Consensus       108 ~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~-~~l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~  186 (380)
                      +...++..+...+..++.|.++|.- |+||.++.. .++..+...++.+.      .|                    .+
T Consensus        73 ~~~~sis~l~~all~P~lGa~aD~~-~~Rk~~l~~~~~~~~~~~~~l~~v------~~--------------------~~  125 (477)
T PF11700_consen   73 LYANSISGLLQALLAPFLGAIADYG-GRRKRFLLIFTLLGVLATALLWFV------SP--------------------GQ  125 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccc-ccchHHHHHHHHHHHHHHHHHHHh------Cc--------------------ch
Confidence            4566777788888889999999987 776655544 44555555555442      01                    23


Q ss_pred             HHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhh--------------------hhhhhHHHHHHHHHHHHHHHHH
Q 016902          187 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK--------------------THLDRFFNFFYLSVTVGAIVAF  246 (380)
Q Consensus       187 ~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~--------------------~~r~~~~~~~~~~~~iG~~i~~  246 (380)
                      .....+..++..++.++......++..|..+++.....                    ..|++..++-+...++|+.+..
T Consensus       126 ~~~~~~l~iia~v~~~~~~vfyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l  205 (477)
T PF11700_consen  126 WWLALVLFIIANVGYEASNVFYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVAL  205 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHH
Confidence            33333333445567777778888999998887652000                    0015555555555667776665


Q ss_pred             HHHHHhhh--------cchhhHHHHHHHHHHHHHHHH-HHhhccccc-c-cCCCCCccchHHHHHHHHHhhc
Q 016902          247 TLVVYIQM--------EHGWGSAFGALAIAMGISNML-FFIGTPLYR-H-RLPGGSPLTRVAQVLVAAFRKR  307 (380)
Q Consensus       247 ~i~~~i~~--------~~gw~~~f~i~~~~~~~~~i~-~~~~~~~~~-~-~~~~~~~~~~~~~v~~~a~~~r  307 (380)
                      .+.-.+..        ..+.|..+.+.++..++..+. ++..+++.+ + .++..+.++.-.+-+...+|+.
T Consensus       206 ~i~l~~~~~~~~~~~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~t~k~~  277 (477)
T PF11700_consen  206 LISLLLVISPGSTASNTWAIRVAFLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRLWRTFKEI  277 (477)
T ss_pred             HHHHHHHHcCCCccccchhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHHHHHHHHH
Confidence            54433311        123477777766665444333 333333322 1 2222233344444445555543

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PTZ00207 hypothetical protein; Provisional

Probab=97.96  E-value=9.6e-05  Score=76.39  Aligned_cols=173  Identities=12%  Similarity=0.048  Sum_probs=122.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc-CCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhcchhH-------HH
Q 016902           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVM-HKSFAD--SSNAVNNFLGISQASSVLGGFLADAYLGRYW-------TI  139 (380)
Q Consensus        70 ~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~-~~s~~~--a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~-------~i  139 (380)
                      .+|+++...+|..-+...+..|+ .++-+.+ |.+...  ..+.++++.++.++|-+.+|+++ .|+-||+       ++
T Consensus       354 d~Wll~~~~~cg~g~gl~~~~N~-~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~-~~~~~~~~~~r~prt~  431 (591)
T PTZ00207        354 RLWCLLWSIFCCVGAHFVIIFNA-RFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFE-IWSQKRRAEDRVPITI  431 (591)
T ss_pred             hHHHHHHHHHHhhCchheeeecH-HHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHH-HHHHhhccccccchhH
Confidence            46778877777666665555664 5666677 773322  33478999999999999999999 3433333       22


Q ss_pred             --HHHHHHHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCC
Q 016902          140 --AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD  217 (380)
Q Consensus       140 --~i~~~l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~  217 (380)
                        .+..+ ..++.+++++.  +                          ....++++-+++|++.|...++..+...|+|.
T Consensus       432 ~l~~~~~-~~~~~lll~~~--~--------------------------p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg  482 (591)
T PTZ00207        432 ALFIPSV-CIITMLTLFLT--L--------------------------PKAALPLPYFIAAFANGFMAATIALVTRTIFA  482 (591)
T ss_pred             HHHHHHH-HHHHHHHHHHH--C--------------------------CccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc
Confidence              22333 55555555553  0                          11468999999999999999999999999999


Q ss_pred             CCCchhhhhhhhHHHHHHHHHHHHHHHH-HHHHHHhhhc----------ch---hhHHHHHHHHHHHHHHHHHHhhc
Q 016902          218 ERSKDYKTHLDRFFNFFYLSVTVGAIVA-FTLVVYIQME----------HG---WGSAFGALAIAMGISNMLFFIGT  280 (380)
Q Consensus       218 ~~~~~~~~~r~~~~~~~~~~~~iG~~i~-~~i~~~i~~~----------~g---w~~~f~i~~~~~~~~~i~~~~~~  280 (380)
                       ++      -+.-+|..+.+.-+|+.+- -.+.|++.|.          .|   ++.+|.+.+++.++++++-....
T Consensus       483 -k~------~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~  552 (591)
T PTZ00207        483 -KD------PAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVH  552 (591)
T ss_pred             -cc------hHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhhee
Confidence             77      7999999888888887663 5666766542          12   78889888887777776654443

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.87  E-value=0.0002  Score=53.64  Aligned_cols=66  Identities=18%  Similarity=0.003  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 016902           78 EMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI  145 (380)
Q Consensus        78 ~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l  145 (380)
                      .++...+...+..+++.|+. +.|++..+.+.+.++..+...++++++|+++|++ ||++.++....+
T Consensus         9 yf~~f~~~g~~~Pfl~~~~~-~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~-~~~~~~l~~~~~   74 (77)
T PF12832_consen    9 YFFYFAALGCLYPFLPLYLK-QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKF-GKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHHHHHhhhhHhhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CccHHHHHHHHH
Confidence            33333444456677888887 5899999999999999999999999999999998 988887776554

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.85  E-value=0.00077  Score=70.83  Aligned_cols=82  Identities=9%  Similarity=0.076  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcc--hhHHHHHHHHHH
Q 016902           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG-ISQASSVLGGFLADAYLG--RYWTIAIFTTIY  146 (380)
Q Consensus        70 ~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~-~~~~~~l~~g~lsD~~~G--R~~~i~i~~~l~  146 (380)
                      ..+...+..++....++++.++++.|+++++|++..+++.+.....+ +..++.+++|+++||+ +  .++.+.++.++.
T Consensus       331 ~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~-~~~~~~~~~~~~~~~  409 (633)
T TIGR00805       331 IYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKF-KLNVKKAAYFAICLS  409 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeee-cccHHHHHHHHHHHH
Confidence            45667777788888999999999999999999999999988877655 5678999999999997 7  356666666666


Q ss_pred             HHHHHH
Q 016902          147 LAGLTG  152 (380)
Q Consensus       147 ~lg~~~  152 (380)
                      ++++++
T Consensus       410 ~~~~~~  415 (633)
T TIGR00805       410 TLSYLL  415 (633)
T ss_pred             HHHHHH
Confidence            665444

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=97.83  E-value=4.6e-08  Score=97.79  Aligned_cols=185  Identities=15%  Similarity=0.093  Sum_probs=106.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 016902           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (380)
Q Consensus        70 ~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg  149 (380)
                      .....+....+..+..+....+...++.+..+.+..  -.......+...++.+++.++.|++ |||+.++++.++..+.
T Consensus       253 ~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-GRr~~~i~~~~~~~~~  329 (451)
T PF00083_consen  253 RLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRF-GRRKLLIIGLLLMAIC  329 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccc-cccccccccccccccc
Confidence            344444444444444433444455556666777665  1222233344556667778999997 9999999988877766


Q ss_pred             HHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHH-HHhccchhhhhhhHhhccCCCCCchhhhhhh
Q 016902          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYIT-GFGAAGIRPCVSSFGADQFDERSKDYKTHLD  228 (380)
Q Consensus       150 ~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~-g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~  228 (380)
                      .+.+.....   ..++              .+ +..+... ++...+. .....+..+....+.+|.||.+.      |+
T Consensus       330 ~~~~~~~~~---~~~~--------------~~-~~~~~~~-i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~------R~  384 (451)
T PF00083_consen  330 SLILGIIFF---LGVS--------------SS-SWWSILS-IVFLALFFAFFSLGWGPLPWIYTAELFPTKV------RS  384 (451)
T ss_pred             ccccccccc---cccc--------------cc-ccccccc-ceeeeeccccccccccccccccccccccccc------cc
Confidence            665541000   0000              00 0001111 1112122 12222444566688899999998      99


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHhhccc
Q 016902          229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL  282 (380)
Q Consensus       229 ~~~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~  282 (380)
                      ++.++.+....+++.+++.+..++.++.+-...|.+.++++++..++.+...|+
T Consensus       385 ~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpE  438 (451)
T PF00083_consen  385 TGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPE  438 (451)
T ss_pred             cccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEee
Confidence            999998887888888888888777776663445555555555555544443333

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.82  E-value=0.0011  Score=56.68  Aligned_cols=106  Identities=15%  Similarity=0.211  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhH
Q 016902          108 SNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQM  187 (380)
Q Consensus       108 ~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~  187 (380)
                      ....++..+...+..++...+.+++ |.|++++++.+.+.+-.+....                             .+.
T Consensus        40 ~~slai~Y~~~~~s~l~~P~iv~~l-g~K~sm~lg~~~y~~y~~~~~~-----------------------------~~~   89 (156)
T PF05978_consen   40 YYSLAILYGSFAISCLFAPSIVNKL-GPKWSMILGSLGYAIYIASFFY-----------------------------PNS   89 (156)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHh-----------------------------hhH
Confidence            3445555566666777777888886 9999999999988866554332                             345


Q ss_pred             HHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 016902          188 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV  249 (380)
Q Consensus       188 ~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~  249 (380)
                      ..++.+-.+.|+|.+........++.+..+++.      +++..+++......+.++|.++.
T Consensus        90 ~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~------~~~~~~ifw~i~~~s~i~G~~~~  145 (156)
T PF05978_consen   90 YTLYPASALLGFGAALLWTAQGTYLTSYSTEET------IGRNTGIFWAIFQSSLIFGNLFL  145 (156)
T ss_pred             HHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHH------HhhHHHHHHHHHHHHHHHHHHHH
Confidence            677888889999999999999999988776555      66666665555555555554443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.80  E-value=0.00058  Score=70.52  Aligned_cols=155  Identities=12%  Similarity=0.039  Sum_probs=102.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH-HH
Q 016902           66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFA---DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTI-AI  141 (380)
Q Consensus        66 ~~~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~---~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i-~i  141 (380)
                      +..|.+...++..++..+.+|++....+.+....++-+..   ..+.....+..+..++.++.|.+.-++ ||.|.. ++
T Consensus       307 ~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~i-r~~Kw~li~  385 (599)
T PF06609_consen  307 KDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKI-RHIKWQLIF  385 (599)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHc-cchhHHHHH
Confidence            3356677777788888888888888888888777766653   455666667777777888888888765 886554 56


Q ss_pred             HHHHHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCc
Q 016902          142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK  221 (380)
Q Consensus       142 ~~~l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~  221 (380)
                      ++++++++...++..      .++                    +....+...++.++|.|+..........-..|+++ 
T Consensus       386 ~~~~~ta~~Gama~~------~~~--------------------n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~-  438 (599)
T PF06609_consen  386 GSVLMTAFCGAMAAV------RPD--------------------NKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDED-  438 (599)
T ss_pred             HHHHHHHHHHHHHHc------cCC--------------------CcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchH-
Confidence            666666555554432      111                    22223445567788887766555444433445544 


Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 016902          222 DYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ  253 (380)
Q Consensus       222 ~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~  253 (380)
                           .+...++....-.+|+.++..+..-+.
T Consensus       439 -----ig~a~gL~~s~R~~GGsIg~aIy~~I~  465 (599)
T PF06609_consen  439 -----IGTATGLTGSIRSIGGSIGYAIYNAIF  465 (599)
T ss_pred             -----HHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence                 889988888888888888877765543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.74  E-value=0.00026  Score=70.95  Aligned_cols=157  Identities=8%  Similarity=-0.064  Sum_probs=110.8

Q ss_pred             HHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCCC
Q 016902           88 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD  167 (380)
Q Consensus        88 i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~~  167 (380)
                      +.+++--+++ +++-....-+.....-.++-.+.-++.++|..++ |+-+++.+++.+..+=++.+...           
T Consensus       390 v~tFLfWHle-d~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~ki-GHv~v~~lgLa~~~~Rf~~~S~L-----------  456 (618)
T KOG3762|consen  390 VFTFLFWHLE-DLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKI-GHVNVMYLGLACNVGRFLYYSYL-----------  456 (618)
T ss_pred             HHHHHHHHHh-hcCCcceeeeehhhhhccchHHHHHHHHHHHHHh-cccceeeehhhHHHHHHHHHHHh-----------
Confidence            3344433443 4443333333333333444555566778999997 99999999988887766665553           


Q ss_pred             cccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHH-HHHHHHHHHH
Q 016902          168 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL-SVTVGAIVAF  246 (380)
Q Consensus       168 ~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~-~~~iG~~i~~  246 (380)
                                       .|.++.+..-++.|+..+.+..++.+|+.+..|++-      ++++-++... .-.+|-.+|.
T Consensus       457 -----------------~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l------~at~Q~l~~g~f~GlG~g~Gs  513 (618)
T KOG3762|consen  457 -----------------QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGL------RATAQGLLQGIFHGLGKGLGS  513 (618)
T ss_pred             -----------------cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc------hHHHHHHHHHHhcccCcchhh
Confidence                             456667777789999999999999999999999887      7777776443 2346667777


Q ss_pred             HHHHHhhhcchhhHHHHHHHHHHHHHHHHHHhhc
Q 016902          247 TLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT  280 (380)
Q Consensus       247 ~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~~~~  280 (380)
                      +|++.+.+.+|-+..|.+.+++.++.++.+....
T Consensus       514 lIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~iq  547 (618)
T KOG3762|consen  514 LIGGFVVERFGARTTFRIFGIACLVTLALFISIQ  547 (618)
T ss_pred             hhhhhhheeehhHHHHHHHHHHHHHHHHHHHHhh
Confidence            8888888888888888888887777766665543

>TIGR01272 gluP glucose/galactose transporter

Probab=97.54  E-value=0.0006  Score=65.11  Aligned_cols=86  Identities=10%  Similarity=0.064  Sum_probs=71.1

Q ss_pred             hhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhc---------
Q 016902          185 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME---------  255 (380)
Q Consensus       185 ~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~---------  255 (380)
                      .+...++++.+++|.|.+..++...+++++..++++      +.+.+|+......+|..++|.+++.+...         
T Consensus         8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~   81 (310)
T TIGR01272         8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQV   81 (310)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhh
Confidence            467889999999999999999999999999999877      88899999999999999999999977631         


Q ss_pred             -------chhhHHHHHHHHHHHHHHHHH
Q 016902          256 -------HGWGSAFGALAIAMGISNMLF  276 (380)
Q Consensus       256 -------~gw~~~f~i~~~~~~~~~i~~  276 (380)
                             ..|+++|++.+++..+..+++
T Consensus        82 ~~~~~~~~~~~~~yl~ia~~~~~~~i~~  109 (310)
T TIGR01272        82 ATANAEAAKVHTPYLLLAGALAVLAIIF  109 (310)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   368889886655544444433

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK03612 spermidine synthase; Provisional

Probab=97.52  E-value=0.018  Score=59.05  Aligned_cols=167  Identities=11%  Similarity=0.069  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH-HHHHHHh
Q 016902           77 NEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA-GLTGITL  155 (380)
Q Consensus        77 ~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~l-g~~~l~l  155 (380)
                      ..++..++..+.-....-.+...+|-+....+.+++++.++..+|..+++.++++...++..+.+...+... ...++..
T Consensus        22 ~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~  101 (521)
T PRK03612         22 AVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYA  101 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444556677778988889999999999999999999988875432222222211111111 1111111


Q ss_pred             hhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHH
Q 016902          156 CATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY  235 (380)
Q Consensus       156 ~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~  235 (380)
                      ....   ..                    .....++...++.++..|+..|.+..+..+... ++      -+...+-.|
T Consensus       102 ~~~~---~~--------------------~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~------~g~~~g~ly  151 (521)
T PRK03612        102 AFAF---QG--------------------LSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD-QH------LGHNVATVL  151 (521)
T ss_pred             HHHH---HH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cc------hhhhhhhhH
Confidence            1000   00                    011122233345566666666665555443222 11      345566777


Q ss_pred             HHHHHHHHHHHHHHHHhh-hcchh-hHHHHHHHHHHHHHH
Q 016902          236 LSVTVGAIVAFTLVVYIQ-MEHGW-GSAFGALAIAMGISN  273 (380)
Q Consensus       236 ~~~~iG~~i~~~i~~~i~-~~~gw-~~~f~i~~~~~~~~~  273 (380)
                      ....+|+++|.++.+++. ...|- +..+.+..+..++++
T Consensus       152 ~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~  191 (521)
T PRK03612        152 AADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAAL  191 (521)
T ss_pred             hHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            788888888888887654 45663 333333333333443

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=97.49  E-value=0.00033  Score=68.95  Aligned_cols=167  Identities=13%  Similarity=0.094  Sum_probs=109.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cchhHHHHHH-HH
Q 016902           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWTIAIF-TT  144 (380)
Q Consensus        69 ~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~---~GR~~~i~i~-~~  144 (380)
                      +.++.+..+.+...+++..=.+++++|++ .+|++.+-.+.+-..--+...+.+++.|..|||.   +||||.++.. .+
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~  110 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL  110 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHH-HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence            55565665666555665555567778876 6788877766665555566677788889999965   6998776654 45


Q ss_pred             HHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhh
Q 016902          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (380)
Q Consensus       145 l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~  224 (380)
                      ...++++++..++-+..+.     |++      .-.+.......+++++..+.=+..-..+...-++.+|....++.   
T Consensus       111 ~i~~~l~Lig~aaDig~~l-----gd~------~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~---  176 (498)
T KOG0637|consen  111 LIAVSLFLIGYAADIGLLL-----GDN------ERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAK---  176 (498)
T ss_pred             HHHHHHhhhhhHhhhhHHh-----cCC------cccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhh---
Confidence            5566666555543321111     110      00112224566778888888888888889999999999986552   


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 016902          225 THLDRFFNFFYLSVTVGAIVAFTLVVYI  252 (380)
Q Consensus       225 ~~r~~~~~~~~~~~~iG~~i~~~i~~~i  252 (380)
                      ++|  +.+++.+...+|..+|...++|.
T Consensus       177 ~~~--Ans~f~~f~avGnvLGY~~g~y~  202 (498)
T KOG0637|consen  177 KTR--ANSVFSFFMAVGNVLGYALGSYL  202 (498)
T ss_pred             hhc--cchhHHHHHHhcceeeeeccccc
Confidence            122  77788888888888887776654

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=97.46  E-value=6.3e-06  Score=76.16  Aligned_cols=156  Identities=13%  Similarity=0.170  Sum_probs=116.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 016902           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA  148 (380)
Q Consensus        69 ~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~l  148 (380)
                      -+..+.++..|...+.+- --..+.+++..+.+++.++..++.++|+.-..+.+.++|++.||.+|-|..-++-+.+..+
T Consensus        44 m~lv~mc~lgfgsyfcyd-~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~  122 (459)
T KOG4686|consen   44 MALVFMCLLGFGSYFCYD-APGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFL  122 (459)
T ss_pred             HHHHHHHHhcccceeecC-CchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHH
Confidence            344444444444333321 2234566777777777777888888888888899999999999999988877777777778


Q ss_pred             HHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhh
Q 016902          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD  228 (380)
Q Consensus       149 g~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~  228 (380)
                      |.++++.....                         ...+++..+|++.|+|.-........+..-.|..++      ..
T Consensus       123 GqliFa~Ggi~-------------------------~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE------Ln  171 (459)
T KOG4686|consen  123 GQLIFAAGGIS-------------------------HAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE------LN  171 (459)
T ss_pred             HHHHHHhchHH-------------------------HHHHHHHhhheeeccCchhhhhhhcceeEEEecCcc------cc
Confidence            88777654220                         357788999999999987777777888888898777      89


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 016902          229 RFFNFFYLSVTVGAIVAFTLVVYIQMEH  256 (380)
Q Consensus       229 ~~~~~~~~~~~iG~~i~~~i~~~i~~~~  256 (380)
                      -.|++..-...+|+.+...+.+++.+..
T Consensus       172 ~vfGlqlSvAR~GstvNf~lm~~ly~~~  199 (459)
T KOG4686|consen  172 FVFGLQLSVARLGSTVNFLLMPFLYDTM  199 (459)
T ss_pred             chhhHHHHHHHhhceeeeeecHHHHHHH
Confidence            9999988888888888777777776654

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=97.35  E-value=0.041  Score=55.56  Aligned_cols=168  Identities=10%  Similarity=0.054  Sum_probs=91.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCC-----HHHHHHHHHHHHHHHHHH-HHHHHHHHHhhcchhHHHHH
Q 016902           68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKS-----FADSSNAVNNFLGISQAS-SVLGGFLADAYLGRYWTIAI  141 (380)
Q Consensus        68 ~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s-----~~~a~~~~~~~~~~~~~~-~l~~g~lsD~~~GR~~~i~i  141 (380)
                      ++.++...+..|+-.+.++.+-     -+.+.+..+     ......+-+...+...+. .++.+++++++ +|++.+.+
T Consensus         6 ~~k~~~~~l~fF~il~~Y~iLR-----~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~-~~~~lf~~   79 (472)
T TIGR00769         6 LKKFLPLFLMFFCILFNYTILR-----DTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNIL-SKEALFYT   79 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-----hhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHhHHH
Confidence            4556666666666666655322     244555553     233334434333333333 67789999998 99998887


Q ss_pred             HHHHHHHHHHHHHhhhh--cccCCCCCCcccccccccCCCCCCcchhH------HHHHHHHHH-HHHhccchhh-hhhhH
Q 016902          142 FTTIYLAGLTGITLCAT--MKVFMPNQDNCDRISQLLGSCEPAKSWQM------LYLYTVLYI-TGFGAAGIRP-CVSSF  211 (380)
Q Consensus       142 ~~~l~~lg~~~l~l~~~--~~~l~~~~~~c~~~~~~~~~c~~~~~~~~------~~l~~~l~l-~g~g~g~~~~-~~~~~  211 (380)
                      ....+.+..+++++.-.  -..++|+ ..|+..     .-..+.....      .+.+...++ ..+-...... .-.++
T Consensus        80 ~~~~F~~~f~lF~~vl~p~~~~~~p~-~~~~~~-----~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~f  153 (472)
T TIGR00769        80 VISPFLGFFALFAFVIYPLSDLLHPT-ALADKL-----LSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGF  153 (472)
T ss_pred             HHHHHHHHHHHHHHHHhcchhhcCCc-HHHHHH-----HhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            76666665555554321  0111111 011100     0000000000      001111121 2222233333 67889


Q ss_pred             hhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 016902          212 GADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ  253 (380)
Q Consensus       212 ~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~  253 (380)
                      ..|.+..++      -.+++.++..+.++|..+++.+..++.
T Consensus       154 andi~t~~q------akRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       154 ANQITTIDE------AKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             HHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999766      789999999999999999999888875

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=97.34  E-value=0.019  Score=58.72  Aligned_cols=146  Identities=12%  Similarity=0.094  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 016902           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA  148 (380)
Q Consensus        69 ~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~l  148 (380)
                      +....+++..+...+.+|+...+     ...+|.+......+...   ....+....+.+-|++ |||.....+.++..+
T Consensus       322 ~~~~~~~~~~~~~~~~y~gl~~~-----~~~lg~~~~~~~~~~~~---~~~p~~~~~~~~~~~~-gR~~~~~~~~~~~~~  392 (521)
T KOG0255|consen  322 YRTLYLLFIWFVFSLVYYGLSLN-----VSGLGGNIYLNFTLSGL---VELPAYFRNGLLLPEF-GRRPPLFLSLFLAGI  392 (521)
T ss_pred             HHHHHHHHHHHHHhHHHHhhhhh-----hhhcCchHHHHHHHHHH---HHhhHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence            34444444444445555544333     33455544333333222   3333444557889997 999999999999888


Q ss_pred             HHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhh
Q 016902          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD  228 (380)
Q Consensus       149 g~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~  228 (380)
                      +.+..+....     .                    .+.....+...+..++.+....+...+.+|++|+..      |.
T Consensus       393 ~~~~~~~~~~-----~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~------r~  441 (521)
T KOG0255|consen  393 GLLLFGWLPD-----D--------------------LGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVV------RN  441 (521)
T ss_pred             HHHHHHHhhc-----c--------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH------HH
Confidence            8888776421     0                    110122222233334444445556888899999888      99


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016902          229 RFFNFFYLSVTVGAIVAFTLVVYIQM  254 (380)
Q Consensus       229 ~~~~~~~~~~~iG~~i~~~i~~~i~~  254 (380)
                      .+.+.......+|++++|.+......
T Consensus       442 ~~~~~~~~~~~~~~i~ap~~~~~~~~  467 (521)
T KOG0255|consen  442 TAVGAISAAARLGSILAPLFPLLLRQ  467 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999887654443

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=97.26  E-value=0.0079  Score=63.28  Aligned_cols=182  Identities=12%  Similarity=-0.086  Sum_probs=133.4

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccccccccCCC
Q 016902          100 MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSC  179 (380)
Q Consensus       100 ~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c  179 (380)
                      .+...........++....++.+++....+|...|+...+....+.++++.+...+.+.. .. +               
T Consensus        15 ~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~-a~-~---------------   77 (654)
T TIGR00926        15 LNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFG-AI-P---------------   77 (654)
T ss_pred             HHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc-cC-c---------------
Confidence            344445567888999999999999999999999888889999888899888888776431 11 0               


Q ss_pred             CCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcch-h
Q 016902          180 EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-W  258 (380)
Q Consensus       180 ~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g-w  258 (380)
                         .........++++.++++.+|..++.+.+.+++++.-+   ..++...+++|++..+.+.+. .+++..+..... +
T Consensus        78 ---~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~---~~~~~~~~s~F~~fY~~iNiG-Slis~~i~~~l~~~  150 (654)
T TIGR00926        78 ---SSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFE---ERQLSLRSRFFSFFYFAINAG-SLISTIITPILRGD  150 (654)
T ss_pred             ---ccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcC---ccchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHh
Confidence               11334455667788999999999999999999998543   555678999999999887765 466666665443 3


Q ss_pred             hH------HH-HHHHHHHHHHHHHHHhhcccccccCCCCCccchHHHHHHHHHh
Q 016902          259 GS------AF-GALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFR  305 (380)
Q Consensus       259 ~~------~f-~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~  305 (380)
                      ..      +| +..++.+++.++.++.....++..++.+.+...+.+++..++.
T Consensus       151 ~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~  204 (654)
T TIGR00926       151 VGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVT  204 (654)
T ss_pred             hcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHH
Confidence            22      23 3566667777777788877777777776665556666554443

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.24  E-value=0.029  Score=57.12  Aligned_cols=89  Identities=16%  Similarity=0.045  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCC
Q 016902          139 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE  218 (380)
Q Consensus       139 i~i~~~l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~  218 (380)
                      +.++.++..++.+++.++.....   +                ....+..++++..++.++|.-...|...+++++..|+
T Consensus       348 fa~g~~~~g~~f~~l~~~~~~~~---~----------------~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~  408 (493)
T PRK15462        348 FALGLGLMSAGFCILTLSARWSA---M----------------YGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIP  408 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcC---C----------------CCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChH
Confidence            56677777778777766533110   0                0013566677788889999999999999999999998


Q ss_pred             CCchhhhhhhhHHHHHHHH-HHHHHHHHHHHHHHh
Q 016902          219 RSKDYKTHLDRFFNFFYLS-VTVGAIVAFTLVVYI  252 (380)
Q Consensus       219 ~~~~~~~~r~~~~~~~~~~-~~iG~~i~~~i~~~i  252 (380)
                      +.      ++..++.|+.. ..+|..++..+..+.
T Consensus       409 ~~------~g~~mg~w~l~~~~~~~~~~g~~~~~~  437 (493)
T PRK15462        409 GV------TGVLTGIYMLLSGAIANYLAGVIADQT  437 (493)
T ss_pred             HH------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            88      99999998774 467777776666655

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=97.11  E-value=0.043  Score=54.17  Aligned_cols=156  Identities=9%  Similarity=0.006  Sum_probs=94.0

Q ss_pred             HHhHHHHHHHh-cCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCC
Q 016902           89 SVNMVTFMFYV-MHKSFADSSNAVN-NFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQ  166 (380)
Q Consensus        89 ~~~l~~yl~~~-~~~s~~~a~~~~~-~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~  166 (380)
                      -+++..|+.+. .|++..+..+-+. ++.-.....-++...++|.. |-|++++++.+..++...++...          
T Consensus        23 EPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l-~Ykpviil~~~~~i~t~~lll~~----------   91 (412)
T PF01770_consen   23 EPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYL-RYKPVIILQALSYIITWLLLLFG----------   91 (412)
T ss_pred             CccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHH----------
Confidence            45688999987 8999888764332 23333333445567899976 88888888888777776666553          


Q ss_pred             CcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHH
Q 016902          167 DNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF  246 (380)
Q Consensus       167 ~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~  246 (380)
                                        .+...+-+.-++.|++.+. .....+++=-..|+++      -.+..+.-..+..+|-.++.
T Consensus        92 ------------------~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~------yq~vts~~raa~l~g~~~s~  146 (412)
T PF01770_consen   92 ------------------TSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEH------YQKVTSYTRAATLVGRFISS  146 (412)
T ss_pred             ------------------CcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHH------HHHHHHHHHHHHHHHHHHHH
Confidence                              2455566666777776654 3444455444444333      33344444444555555555


Q ss_pred             HHHHHhhh--cchhhHHHHHHHHHHHHHHHHHHhhc
Q 016902          247 TLVVYIQM--EHGWGSAFGALAIAMGISNMLFFIGT  280 (380)
Q Consensus       247 ~i~~~i~~--~~gw~~~f~i~~~~~~~~~i~~~~~~  280 (380)
                      +++-.+..  ..++...+.+..+...+++++.++.+
T Consensus       147 ~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP  182 (412)
T PF01770_consen  147 LLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLP  182 (412)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence            55444433  34566677777777777766655443

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.04  E-value=0.0036  Score=61.76  Aligned_cols=181  Identities=13%  Similarity=0.081  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhH-HHHHHHHHHHHH
Q 016902           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYW-TIAIFTTIYLAG  149 (380)
Q Consensus        71 ~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~-~i~i~~~l~~lg  149 (380)
                      ..+++....+....+++..+.+ .-....-|++...++.+.....+.+.++.++.|.++||. ..++ ++++......++
T Consensus       268 F~il~~~ygi~~g~F~~l~~~l-~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dkt-k~fk~~~~v~~~~~~v~  345 (480)
T KOG2563|consen  268 FIILAICYGIGLGLFNSLSTLL-NLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKT-KKFKLTTLVLYLFALVG  345 (480)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHh-hhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHHHHH
Confidence            3444444444444455444432 222335577878889999999999999999999999997 5554 444444445555


Q ss_pred             H-HHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhcc-CCCCCchhhhhh
Q 016902          150 L-TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQ-FDERSKDYKTHL  227 (380)
Q Consensus       150 ~-~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~-f~~~~~~~~~~r  227 (380)
                      . .+.....     .    .|                ....++....+.|++..+..|.-.-++.|. ||..+       
T Consensus       346 ~~~l~~~t~-----~----~~----------------~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E-------  393 (480)
T KOG2563|consen  346 TLMLLTCTL-----F----LG----------------DSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAE-------  393 (480)
T ss_pred             HHHHHHhhc-----c----CC----------------ceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCC-------
Confidence            3 2222210     0    11                233455566677777778788777777776 44433       


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhcch---hhHH-HHHHHHHHHHHHHHHHhhcccccc
Q 016902          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHG---WGSA-FGALAIAMGISNMLFFIGTPLYRH  285 (380)
Q Consensus       228 ~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g---w~~~-f~i~~~~~~~~~i~~~~~~~~~~~  285 (380)
                      +.-.++.++...+-+.+-.++.+...+..+   |.++ -+..+..+.+.+++..+.++.|+.
T Consensus       394 ~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R  455 (480)
T KOG2563|consen  394 GTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRR  455 (480)
T ss_pred             cccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHh
Confidence            333344444444444444555566665554   3332 233344444455555555665544

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=96.97  E-value=0.024  Score=55.72  Aligned_cols=124  Identities=14%  Similarity=0.006  Sum_probs=78.6

Q ss_pred             HhHHHHHHHhcCC---CHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH-HHHHHHHHHHHHHHHhhhhccc
Q 016902           90 VNMVTFMFYVMHK---SFA----DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTI-AIFTTIYLAGLTGITLCATMKV  161 (380)
Q Consensus        90 ~~l~~yl~~~~~~---s~~----~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i-~i~~~l~~lg~~~l~l~~~~~~  161 (380)
                      ..++.|+++..+.   +..    ..+...++..+..++..++.|-++|.. |+||.. -+...+-++.+.++...     
T Consensus        36 ~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~-g~Rk~~~~~f~~i~i~~~~~L~~i-----  109 (438)
T COG2270          36 FIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYP-GPRKKFFGFFTAIGIISTFLLWFI-----  109 (438)
T ss_pred             ehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccC-CCcchHHHHHHHHHHHHHHHHHHh-----
Confidence            3467788777655   332    334566677777778888899999998 866544 44555555555555553     


Q ss_pred             CCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHH
Q 016902          162 FMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVG  241 (380)
Q Consensus       162 l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG  241 (380)
                        ++                  +.++....+.+.+..++..+......++..|..++++-+    |.+..+|  -...+|
T Consensus       110 --~~------------------~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~~----riS~lg~--~~gylg  163 (438)
T COG2270         110 --PP------------------GSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNMG----RISGLGW--ALGYLG  163 (438)
T ss_pred             --CC------------------CchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccccC----ccccccc--cccccc
Confidence              11                  024455555566778888888889999999998876622    4444443  233444


Q ss_pred             HHHH
Q 016902          242 AIVA  245 (380)
Q Consensus       242 ~~i~  245 (380)
                      +.+.
T Consensus       164 s~i~  167 (438)
T COG2270         164 SVIL  167 (438)
T ss_pred             chHH
Confidence            4443

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=96.95  E-value=0.018  Score=55.87  Aligned_cols=152  Identities=14%  Similarity=0.118  Sum_probs=108.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 016902           69 IAALFIFGNEMAERMAYFGLSVNMVTFM-FYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL  147 (380)
Q Consensus        69 ~~~~~i~~~~~~~~~~~~~i~~~l~~yl-~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~  147 (380)
                      ..++.++....+.....|....+...++ ...+|+++.+.+...+.-..+..+..+.-++..|++.|.-+..+.-.++.+
T Consensus       260 i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~  339 (451)
T KOG2615|consen  260 ISVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLI  339 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHH
Confidence            3566666666555555555666666666 467999999998777776666666777777888887554333333333322


Q ss_pred             H-HHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhh
Q 016902          148 A-GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (380)
Q Consensus       148 l-g~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~  226 (380)
                      + ..+++...                            .....++++..+..+..+...+|+..+.....|...      
T Consensus       340 vP~~llls~~----------------------------~~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~q------  385 (451)
T KOG2615|consen  340 VPAFLLLSLA----------------------------RTPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQ------  385 (451)
T ss_pred             HHHHHHHhcc----------------------------ccchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCccc------
Confidence            2 22222222                            234568888888899988999999999999988777      


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016902          227 LDRFFNFFYLSVTVGAIVAFTLVVYIQM  254 (380)
Q Consensus       227 r~~~~~~~~~~~~iG~~i~~~i~~~i~~  254 (380)
                      |+...++......++=.+||.+.|++..
T Consensus       386 rG~~~Gi~~Sl~alaRaiGPlv~g~i~~  413 (451)
T KOG2615|consen  386 RGTLNGIFRSLGALARAIGPLVSGVIFS  413 (451)
T ss_pred             chHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence            9999999999999999999999987754

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=96.93  E-value=0.014  Score=58.96  Aligned_cols=128  Identities=11%  Similarity=0.054  Sum_probs=104.3

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCccc
Q 016902           91 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD  170 (380)
Q Consensus        91 ~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~~~c~  170 (380)
                      .+..|+...++++..+.+...+.......++.++..++--+.+|-++++.+|++...++....+++              
T Consensus       263 ~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~--------------  328 (463)
T KOG2816|consen  263 VLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFA--------------  328 (463)
T ss_pred             EEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHh--------------
Confidence            456788889999999999999999999999998888544444599999999999999998888885              


Q ss_pred             ccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 016902          171 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV  250 (380)
Q Consensus       171 ~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~  250 (380)
                                    ++.++++.+..+.++. +...+...++.+-+.+.++      ++..+++......+.+++++.+-+
T Consensus       329 --------------~~~w~~~~~~v~~~~~-~~~~pa~~s~~s~~v~~~e------~g~v~~~is~i~~l~~~~~~~~~~  387 (463)
T KOG2816|consen  329 --------------TETWMMFAAGVVVALA-GIVFPAIRAFASILVSPEE------QGKVFGIISGIEGLSGVVSPALYG  387 (463)
T ss_pred             --------------ccchhhhHHHHHHHhh-cchhHHHHhHHHhhccccc------ccchhhHHHHHHHHhhhhhHHHHH
Confidence                          3455667666555444 6777888899999998877      999999999999999988888877


Q ss_pred             Hhh
Q 016902          251 YIQ  253 (380)
Q Consensus       251 ~i~  253 (380)
                      .+.
T Consensus       388 ~i~  390 (463)
T KOG2816|consen  388 NIF  390 (463)
T ss_pred             HHH
Confidence            653

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=96.68  E-value=0.00043  Score=71.20  Aligned_cols=181  Identities=10%  Similarity=0.071  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHH
Q 016902           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFL-GISQASSVLGGFLADAY-LGRYWTIAIFTTIYL  147 (380)
Q Consensus        70 ~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~-~~~~~~~l~~g~lsD~~-~GR~~~i~i~~~l~~  147 (380)
                      ...+..+...++.+...|+.++++-|++.+|+++...++.+..... .+..+|.++||++..|+ ++.|..+.+..++.+
T Consensus       306 ~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~  385 (539)
T PF03137_consen  306 VFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSI  385 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHH
Confidence            4566666777888888899999999999999999999988876654 47788999999999987 444555555544444


Q ss_pred             HHHHHHHhhhh-----------cccCC-----CC----CCccccc------ccccCCCCCCcchhHHHHHHHHHHHHHhc
Q 016902          148 AGLTGITLCAT-----------MKVFM-----PN----QDNCDRI------SQLLGSCEPAKSWQMLYLYTVLYITGFGA  201 (380)
Q Consensus       148 lg~~~l~l~~~-----------~~~l~-----~~----~~~c~~~------~~~~~~c~~~~~~~~~~l~~~l~l~g~g~  201 (380)
                      +..++......           .....     ..    ...|+..      +.....|...-..+...+++.+++..+..
T Consensus       386 v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~  465 (539)
T PF03137_consen  386 VSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFT  465 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHH
Confidence            44333111000           00000     00    0012110      00012344331233444555554444444


Q ss_pred             cchhhhhhhHhhccCCCCCchhhhhhhhHHHH-HHHHHHHHHHHHHHHHHHhhhcc
Q 016902          202 AGIRPCVSSFGADQFDERSKDYKTHLDRFFNF-FYLSVTVGAIVAFTLVVYIQMEH  256 (380)
Q Consensus       202 g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~-~~~~~~iG~~i~~~i~~~i~~~~  256 (380)
                      +..........-...++++      |+-+.++ +.+...+|..-||++.|++.|..
T Consensus       466 ~~~~~p~~~i~LR~V~~~~------rs~AlGv~~~~~rllg~IPgPIifG~iiD~t  515 (539)
T PF03137_consen  466 FMSQVPSTLITLRCVPPEQ------RSFALGVQWLIIRLLGFIPGPIIFGAIIDST  515 (539)
T ss_dssp             --------------------------------------------------------
T ss_pred             HhcccchheeeeccCChhh------cchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence            4444444444446677666      8888888 55566778888999999988753

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.56  E-value=0.11  Score=54.77  Aligned_cols=76  Identities=11%  Similarity=0.098  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHH
Q 016902           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNN-FLGISQASSVLGGFLADAY-LGRYWTIAIFTTI  145 (380)
Q Consensus        70 ~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~-~~~~~~~~~l~~g~lsD~~-~GR~~~i~i~~~l  145 (380)
                      ...+.++...++.+.+.|+.++++-||.++|+.+...+..+... ...+..+|.++||++.-++ +.-|.+..+..+.
T Consensus       393 if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~  470 (735)
T KOG3626|consen  393 IFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVC  470 (735)
T ss_pred             hHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHH
Confidence            35677778889999999999999999999999999999887744 5567788889999999887 3444444444333

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=96.43  E-value=0.051  Score=41.33  Aligned_cols=65  Identities=8%  Similarity=-0.073  Sum_probs=56.6

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhh
Q 016902           91 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLC  156 (380)
Q Consensus        91 ~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~  156 (380)
                      .+.+.++++.+++..+++++.+.-.+++.+|.+...++.++. .+++.+..+.++..+.++.+++.
T Consensus        13 plLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ma~~   77 (85)
T PF06779_consen   13 PLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS-RPRRLLRAGLLLTVLSTAAMALT   77 (85)
T ss_pred             hHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHH
Confidence            456678899999999999999999999999999999999985 77888888888888888777764

Note that many members are hypothetical proteins.

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=96.31  E-value=0.0024  Score=58.95  Aligned_cols=156  Identities=17%  Similarity=0.118  Sum_probs=87.6

Q ss_pred             HhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcc
Q 016902           90 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC  169 (380)
Q Consensus        90 ~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~~~c  169 (380)
                      ...+.|+.+.+++...+.+.+.-.-.+...+...+.|-|+|+. |||+.....++.|+    +..+.-+           
T Consensus        57 gPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkq-GRKracvtycitYi----LsCiTKh-----------  120 (454)
T KOG4332|consen   57 GPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVTYCITYI----LSCITKH-----------  120 (454)
T ss_pred             CceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhh-ccccceeeehHHHH----HHHHhhc-----------
Confidence            3445677888898888877666555666666777889999997 99997665555444    3333311           


Q ss_pred             cccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhh-HhhccCCCCCchhhhhhhhHHHH-HHHHHHHHHHHHHH
Q 016902          170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSS-FGADQFDERSKDYKTHLDRFFNF-FYLSVTVGAIVAFT  247 (380)
Q Consensus       170 ~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~-~~ad~f~~~~~~~~~~r~~~~~~-~~~~~~iG~~i~~~  247 (380)
                                    ++++-.+.+||++-|+..+......-+ +++|.-+.++-+. .=...-|+= .+++..+-+.++.+
T Consensus       121 --------------SpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHnekr~Feq-qWls~TFskA~ffgNglvAiiaGl  185 (454)
T KOG4332|consen  121 --------------SPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHNEKRGFEQ-QWLSVTFSKAVFFGNGLVAIIAGL  185 (454)
T ss_pred             --------------CCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhccCChH-hhhhHHHHHHHHhhccHHHHHHHH
Confidence                          145667889999988888766544333 3444433222110 001111111 22333333444545


Q ss_pred             HHHHhhhcch--hhHHHHHHHHHHHHHHHHH
Q 016902          248 LVVYIQMEHG--WGSAFGALAIAMGISNMLF  276 (380)
Q Consensus       248 i~~~i~~~~g--w~~~f~i~~~~~~~~~i~~  276 (380)
                      .+-++.+.++  --.+|-..+.+..++..+.
T Consensus       186 fgn~lvd~~slGPVAPFdAAacfLaigmAvi  216 (454)
T KOG4332|consen  186 FGNLLVDTFSLGPVAPFDAAACFLAIGMAVI  216 (454)
T ss_pred             HHHHHHHHhccCCCCchHHHHHHHHHHHHHH
Confidence            5555666554  3345654444444444443

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=96.24  E-value=0.33  Score=48.57  Aligned_cols=136  Identities=10%  Similarity=-0.086  Sum_probs=98.1

Q ss_pred             HHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCC
Q 016902           87 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQ  166 (380)
Q Consensus        87 ~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~  166 (380)
                      +....++.|+..+ |++....+..=+.-.+....+..+..++..|+ |--|+=+++.....+.+.+...+...+..    
T Consensus       276 sf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~ri-Glvr~G~~~l~~q~~~L~~~v~~~~~~~~----  349 (432)
T PF06963_consen  276 SFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRI-GLVRAGLWSLWWQWVCLALCVVSFWAPGS----  349 (432)
T ss_pred             cCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHHHHHHHHhcCCC----
Confidence            3445578899877 99999988888888888888999999999997 99998888877766655555544322210    


Q ss_pred             CcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHH
Q 016902          167 DNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF  246 (380)
Q Consensus       167 ~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~  246 (380)
                                    +.+..+...++.+..+.=+|.=++.-+...++-|..|+++      |+.+.+.-+-..++.-++..
T Consensus       350 --------------~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~------Rg~v~gvq~sl~~lf~ll~~  409 (432)
T PF06963_consen  350 --------------PFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESE------RGAVSGVQNSLQSLFELLSF  409 (432)
T ss_pred             --------------CchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHH------hhHHHHHHHHHHHHHHHHHH
Confidence                          0011345566666667667777778888888888888776      99999886666666666654


Q ss_pred             HH
Q 016902          247 TL  248 (380)
Q Consensus       247 ~i  248 (380)
                      .+
T Consensus       410 ~~  411 (432)
T PF06963_consen  410 VL  411 (432)
T ss_pred             HH
Confidence            44

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.16  E-value=0.68  Score=46.57  Aligned_cols=113  Identities=19%  Similarity=0.110  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHHHHHHhh--cchhHHHHHHHHHHHHHHHHHHhhhhccc-CCCCCCcccccccccCCCCCCcchhHHHHH
Q 016902          115 LGISQASSVLGGFLADAY--LGRYWTIAIFTTIYLAGLTGITLCATMKV-FMPNQDNCDRISQLLGSCEPAKSWQMLYLY  191 (380)
Q Consensus       115 ~~~~~~~~l~~g~lsD~~--~GR~~~i~i~~~l~~lg~~~l~l~~~~~~-l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~  191 (380)
                      ..+..++.++.+.+++|.  +||++++.++..++.++.++.-++..... +.|+          + .-....+.+.....
T Consensus       289 g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t----------~-~~~~~~~~~~~~~~  357 (461)
T KOG3098|consen  289 GLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPT----------D-SPPLLFTPSYYLAL  357 (461)
T ss_pred             hHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCC----------c-ccccccccchhHHH
Confidence            344455566677777654  59999999999999988877766421111 1111          0 00001112233344


Q ss_pred             HHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHH
Q 016902          192 TVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA  245 (380)
Q Consensus       192 ~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~  245 (380)
                      +.-++.|++-+........++++.+|+ +      |..+|+++-+--.+++.++
T Consensus       358 ii~~l~G~~D~~~~t~~~~ii~~~~~~-~------~~~~fsi~kfyq~~~s~v~  404 (461)
T KOG3098|consen  358 IIGFLLGFGDACFNTQRYVIIALLYPD-D------RAQAFSLFKFYQSVASCVA  404 (461)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhcC-c------hHHHHHHHHHHHHHHHHHH
Confidence            444678899999999999999999954 3      5666666555444544443

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.15  E-value=0.075  Score=53.34  Aligned_cols=89  Identities=18%  Similarity=0.212  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHH
Q 016902          111 VNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYL  190 (380)
Q Consensus       111 ~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l  190 (380)
                      ..+......+..++++.+-|.. |.|+.+.++...+....+.+..                             .|...+
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i-~~K~~lv~ga~~y~~f~~gfl~-----------------------------~N~y~~  105 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFL-GPKWALVIGATCYAAFPLGFLF-----------------------------PNSYYL  105 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHh-hHHHHHHHHhHHHHHHHHHHHh-----------------------------cchHHH
Confidence            4555666677788899999987 9999999999999887766554                             356678


Q ss_pred             HHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHH
Q 016902          191 YTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF  233 (380)
Q Consensus       191 ~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~  233 (380)
                      +++-.+.|+|.+....-...+..+-..++.    ..|.....|
T Consensus       106 yfssallG~Gaallw~GqG~ylt~~st~~t----ie~Nisi~W  144 (461)
T KOG3098|consen  106 YFSSALLGFGAALLWTGQGGYLTSNSTRET----IERNISIFW  144 (461)
T ss_pred             HHHHHHhhhhHHheecccceehhhcCChhh----HHHHHHHHH
Confidence            888889999999888877788877776655    224444444

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=95.92  E-value=0.035  Score=55.17  Aligned_cols=139  Identities=8%  Similarity=-0.012  Sum_probs=74.9

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---chhHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccc
Q 016902           95 FMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL---GRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR  171 (380)
Q Consensus        95 yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~---GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~~~c~~  171 (380)
                      |...-.|.+..+......+..++..+|.++||.++|++-   -|-.+.....+...+|..+.+..-.+   .+.  .+  
T Consensus       273 ~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~---~~~--~~--  345 (493)
T KOG1330|consen  273 YSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFL---FPA--FT--  345 (493)
T ss_pred             HHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHH---HHh--hh--
Confidence            333444556666677778888999999999999999841   11123333333332222211110000   000  01  


Q ss_pred             cccccCCCCCCcchhHHHHHHHHHHHHHhc-cchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHH-HHHHHHHHHHHHH
Q 016902          172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGA-AGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL-SVTVGAIVAFTLV  249 (380)
Q Consensus       172 ~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~-g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~-~~~iG~~i~~~i~  249 (380)
                                   .....+.+.++++|+-. -...+......++..|++.      |.+++++-.. .-.+|..-+|.+.
T Consensus       346 -------------~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~------Rt~a~a~~~~~~h~fgd~~~p~iv  406 (493)
T KOG1330|consen  346 -------------SSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSR------RTTAYALDTVFEHIFGDAASPYIV  406 (493)
T ss_pred             -------------hHHHHHHHHHHHHHHHHHhcccccccceeeEecCccc------ccHHHHHHHHHHHHhccCCCccee
Confidence                         11122222333333222 2223445556678888887      9999999544 4455666667688


Q ss_pred             HHhhhcc-hhh
Q 016902          250 VYIQMEH-GWG  259 (380)
Q Consensus       250 ~~i~~~~-gw~  259 (380)
                      |.++++. ||+
T Consensus       407 Gilsd~l~g~~  417 (493)
T KOG1330|consen  407 GILSDKLRGYK  417 (493)
T ss_pred             hhHHHHhhCCC
Confidence            8888765 566

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=95.87  E-value=1.8  Score=43.40  Aligned_cols=202  Identities=9%  Similarity=-0.102  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 016902           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (380)
Q Consensus        71 ~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~  150 (380)
                      .+.+....++.+..-=......+.|+..-+.-+.--.+..-..-.+...+..+..|...|+. -|.+++..+.++--+..
T Consensus         4 ~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~-~Rl~~~~~~l~~Qn~sv   82 (432)
T PF06963_consen    4 LWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRS-PRLKVIRTSLVVQNLSV   82 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCC-cchhhHHHHHHHHHHHH
Confidence            34455555555555444444456677766554544444444444455555566678889997 89998877765533322


Q ss_pred             HHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhH
Q 016902          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (380)
Q Consensus       151 ~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~  230 (380)
                      ++.......- +..+   ..       ... ........+.+...+.++..=+..++..+.--|....-..+++..+...
T Consensus        83 ~~s~~~~~~l-~~~~---~~-------~~~-~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~  150 (432)
T PF06963_consen   83 AASCALFLLL-LSYP---SS-------SSQ-SSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARM  150 (432)
T ss_pred             HHHHHHHHHH-HhCC---cc-------ccc-cchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHH
Confidence            2211110000 0000   00       000 0001122222222222222222222223333333221111111224444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHH-HHhhcccccc
Q 016902          231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNML-FFIGTPLYRH  285 (380)
Q Consensus       231 ~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~-~~~~~~~~~~  285 (380)
                      -++..=.=.+.-+++|++.|.+....+...+.++.++..++++.+ +++..+-|+.
T Consensus       151 NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~  206 (432)
T PF06963_consen  151 NATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLARVYNS  206 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            444444445567889999999988788888888777777777766 3444445544

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=95.68  E-value=0.25  Score=48.14  Aligned_cols=159  Identities=14%  Similarity=0.123  Sum_probs=92.1

Q ss_pred             cCCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhcchhHH
Q 016902           64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLAD-----AYLGRYWT  138 (380)
Q Consensus        64 ~~~~~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD-----~~~GR~~~  138 (380)
                      .++..+.+.++++..+++.+-. |... .++++-+.-|.|-+..+.....+  --+-.-++++++.|     ++ ||||.
T Consensus        26 ~~~d~~~illLl~LYllQGiP~-GL~~-~iP~lL~ak~vSyt~~a~fS~ay--~P~sLKllWaPiVDs~y~k~~-Grrks  100 (510)
T KOG3574|consen   26 LKGDRSSILLLLFLYLLQGIPL-GLIG-AIPLLLQAKGVSYTSQAIFSFAY--WPFSLKLLWAPIVDSVYSKRF-GRRKS  100 (510)
T ss_pred             hhhhhhhHHHHHHHHHHcCCch-hHhh-hhHHHhcCCCcchhhhhhhhhhh--hHHHHHHHHHhhhHHHHHHhh-ccccc
Confidence            3455667888888888887665 5666 44555556677766554333222  12234578889999     76 99987


Q ss_pred             HHHHHHHHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCC
Q 016902          139 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE  218 (380)
Q Consensus       139 i~i~~~l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~  218 (380)
                      -++=+ -+.+|.+++.++..++.....               .....+...+...+++.-++.+.-..++-+..-.+..+
T Consensus       101 Wvvp~-q~llG~~mllLs~~v~~~~g~---------------ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~  164 (510)
T KOG3574|consen  101 WVVPC-QYLLGLFMLLLSYLVDRGLGG---------------NGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSR  164 (510)
T ss_pred             eeeeh-HHHHHHHHHHHhhCCCccccc---------------CCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCH
Confidence            65543 356677777776443332221               00112222333333445555555455555555566665


Q ss_pred             CCchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 016902          219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV  249 (380)
Q Consensus       219 ~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~  249 (380)
                      ++      .+-+-.....+.++|.+++.++.
T Consensus       165 e~------lgyaST~q~Vg~~~GyfL~~~if  189 (510)
T KOG3574|consen  165 EN------LGYASTCQSVGQTAGYFLGNVVF  189 (510)
T ss_pred             hh------cCchhHHHHHHHhhhHHhhccee
Confidence            55      66666666777778877776554

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=95.40  E-value=0.014  Score=58.96  Aligned_cols=64  Identities=16%  Similarity=0.101  Sum_probs=51.1

Q ss_pred             HHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 016902           87 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG  152 (380)
Q Consensus        87 ~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~  152 (380)
                      .+...+.+|+ +++|+++.+.+.+..+--++.+++++++|++|||| -++|.+++++++..+...+
T Consensus        29 ~l~pll~vy~-kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~-r~~r~lllgsl~~~v~a~f   92 (618)
T KOG3762|consen   29 SLFPLLAVYF-KQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRY-RKRRPLLLGSLLLSVTATF   92 (618)
T ss_pred             ccchHHHHHH-HHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHH-HhcCchhHHHHHHHHHHHH
Confidence            4556667776 58999999999999999999999999999999999 7666666666655544433

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=95.39  E-value=0.53  Score=47.40  Aligned_cols=85  Identities=15%  Similarity=0.196  Sum_probs=60.5

Q ss_pred             hhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHH------hhhcchh
Q 016902          185 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY------IQMEHGW  258 (380)
Q Consensus       185 ~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~------i~~~~gw  258 (380)
                      .+..+++.+.+++++|.=.+.|...++.+..-|+.-      .+..++.|.++...|..++..+.+.      ..+....
T Consensus       392 ~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~------~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~  465 (498)
T COG3104         392 VSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPAL------KSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIE  465 (498)
T ss_pred             cCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHH------HHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhh
Confidence            457788888999999999999999999999988766      7888888999888888877666552      1222334


Q ss_pred             hHHHHHHHHHHHHHHHH
Q 016902          259 GSAFGALAIAMGISNML  275 (380)
Q Consensus       259 ~~~f~i~~~~~~~~~i~  275 (380)
                      ...|+.......+..+.
T Consensus       466 ~~~F~~~g~v~i~~~~~  482 (498)
T COG3104         466 GRVFGTIGVVAIVIGIL  482 (498)
T ss_pred             hhhHHHHHHHHHHHHHH
Confidence            55566555444433333

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=94.96  E-value=0.083  Score=53.26  Aligned_cols=198  Identities=12%  Similarity=0.098  Sum_probs=114.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhcch---hHHHH
Q 016902           66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQA--SSVLGGFLADAYLGR---YWTIA  140 (380)
Q Consensus        66 ~~~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~--~~l~~g~lsD~~~GR---~~~i~  140 (380)
                      -.|+..+..+...+...+.+..+-+-...+....++++..++....++......+  ..+...+..-+. |+   ++.++
T Consensus       259 ~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l-~~i~~r~~~~  337 (488)
T KOG2325|consen  259 LDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRL-GKIDKRRIIL  337 (488)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHh-hhhccceeee
Confidence            4466777777777887788776666666777778888877765544443332222  223333333333 43   44444


Q ss_pred             HHHHHHHHHHHHHHh-hhhcc-cCCCCC---CcccccccccCCCCCCcchhHHHHHHHH-HHHHHhccchhhhhhhHhhc
Q 016902          141 IFTTIYLAGLTGITL-CATMK-VFMPNQ---DNCDRISQLLGSCEPAKSWQMLYLYTVL-YITGFGAAGIRPCVSSFGAD  214 (380)
Q Consensus       141 i~~~l~~lg~~~l~l-~~~~~-~l~~~~---~~c~~~~~~~~~c~~~~~~~~~~l~~~l-~l~g~g~g~~~~~~~~~~ad  214 (380)
                      .++++..+...+... -...+ .+.+..   ..|...  +.+-|......+...++++. ++.|++.-.+.....++.++
T Consensus       338 ~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~--~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySk  415 (488)
T KOG2325|consen  338 LGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFE--EYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSK  415 (488)
T ss_pred             ehHHHHHHhhheeeeeccccccccccccccccCcCcc--cchhhccCcccChhhheeehhheeccccccccchHHHHHHH
Confidence            443332222222111 00000 011110   012100  01237666666666666665 44666666666778888899


Q ss_pred             cCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHH
Q 016902          215 QFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS  272 (380)
Q Consensus       215 ~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~  272 (380)
                      +..+++      .+..-+++.+...++..++|++...+....|.++...+..+..++.
T Consensus       416 iLgp~~------q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~  467 (488)
T KOG2325|consen  416 ILGPRD------QGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVV  467 (488)
T ss_pred             HhCCcc------ccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHH
Confidence            999888      7787788888888999999998888877778776665544444333

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=93.73  E-value=4.2  Score=39.08  Aligned_cols=119  Identities=16%  Similarity=0.066  Sum_probs=63.1

Q ss_pred             cccCCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Q 016902           62 LSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAI  141 (380)
Q Consensus        62 ~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i  141 (380)
                      +.+++..|.++.+....++...++. -..|+.+.+..++|..  ..+++-    .......++.+.+..+ +|-|+++.+
T Consensus        22 r~~~~~~knv~i~s~~fl~~f~a~~-gl~nlq~~vn~~lg~~--sl~~~y----~~l~~s~m~~~~~Ir~-~g~K~tm~l   93 (390)
T KOG3097|consen   22 RKRLGILKNVLILSIAFLLTFTAYL-GLQNLQTSVNYDLGTV--SLGALY----LSLIDSSMFMPLLIRF-LGTKWTMVL   93 (390)
T ss_pred             ccccchhhhhhHHHHHHHHHHHHHH-HHHHHHHHHhcCcccc--hhhhhh----HHHHHHHHHHHHHHHH-HhhHHHHHH
Confidence            3445555666666555554444443 3445666555444332  111111    1122233444455554 599999998


Q ss_pred             HHHHHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCC
Q 016902          142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD  217 (380)
Q Consensus       142 ~~~l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~  217 (380)
                      +...|.+....-        +.                     ..+..++.+-.+.|+|.+...+.-.+|++..-+
T Consensus        94 av~~Y~lyiA~N--------l~---------------------pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~  140 (390)
T KOG3097|consen   94 AVFPYALYIAAN--------LE---------------------PRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQ  140 (390)
T ss_pred             HHHHHHHHHHhh--------cc---------------------hhHHhhccHHHhhccccccccccCcceecHHHH
Confidence            887776432211        11                     234445556667788887777666666655443

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=93.70  E-value=0.61  Score=46.07  Aligned_cols=63  Identities=8%  Similarity=0.074  Sum_probs=49.1

Q ss_pred             hHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016902          186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM  254 (380)
Q Consensus       186 ~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~  254 (380)
                      +.+.+++..+..|+..|+.+.+....+.|..++++      |.-.++...++-.+|..++..++-++..
T Consensus       334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~------REFslg~vsvsds~GI~lAgll~l~le~  396 (402)
T PF02487_consen  334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPED------REFSLGAVSVSDSLGILLAGLLGLPLEP  396 (402)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHH------HHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            35555566677899989999999999999887666      8888888888888888887777666543

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=91.34  E-value=2.5  Score=39.60  Aligned_cols=80  Identities=10%  Similarity=0.119  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHH
Q 016902          190 LYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAM  269 (380)
Q Consensus       190 l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~  269 (380)
                      -+++..++-...|...|.+.-+-....|++.      |+..+||+..-.++-.-++....---....+-+..|.++.+.+
T Consensus       347 s~i~F~~~E~cvGlfwPSimkmRsqyIPEea------rstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~  420 (454)
T KOG4332|consen  347 SLIGFCLFEACVGLFWPSIMKMRSQYIPEEA------RSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFL  420 (454)
T ss_pred             HHHHHHHHHHHHhhcchHHHHHHHhhCCHHH------HhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHH
Confidence            3566666667778888888887777788776      9999999988877754443211000001234578899998888


Q ss_pred             HHHHHH
Q 016902          270 GISNML  275 (380)
Q Consensus       270 ~~~~i~  275 (380)
                      .++.+.
T Consensus       421 ~~a~i~  426 (454)
T KOG4332|consen  421 FVASIL  426 (454)
T ss_pred             HHHHHH
Confidence            777554

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=91.16  E-value=19  Score=36.57  Aligned_cols=70  Identities=16%  Similarity=0.110  Sum_probs=50.0

Q ss_pred             HHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHH
Q 016902          197 TGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGI  271 (380)
Q Consensus       197 ~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~  271 (380)
                      .++............+.+++|++.     ++..+++-+....++..++...+.+.+....||..+..+.-+++++
T Consensus       276 y~~~~nlve~~~k~~v~~~~p~~~-----~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~li  345 (472)
T TIGR00769       276 YGISINLVEVTWKSKLKAQYPSPN-----EYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLL  345 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            444445556666777888887543     2899999988888887766666668899999999887654444444

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=90.92  E-value=12  Score=38.13  Aligned_cols=125  Identities=14%  Similarity=0.210  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhc--ccCCCCCCcccccccccCCCCCCcchhHH------
Q 016902          117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM--KVFMPNQDNCDRISQLLGSCEPAKSWQML------  188 (380)
Q Consensus       117 ~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~--~~l~~~~~~c~~~~~~~~~c~~~~~~~~~------  188 (380)
                      ++.+..++-.++++++ +|.+.+.+....++....+.++.-..  ..++|+ ..+...    .... +......      
T Consensus        71 ~a~~f~~~y~kl~n~~-s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~-~~~~~~----~~~~-~~~~~~~i~~~~~  143 (491)
T PF03219_consen   71 VAILFTILYSKLSNRL-SREKLFYIIIIPFLGFFALFAFVLYPNRDILHPD-AFADKL----LAIL-PPGFKGFIAMFRN  143 (491)
T ss_pred             HHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCC-HHHHHh----hhhc-cchHHHHHHHHHH
Confidence            3444566778999997 99998887776666655555543220  112222 011100    0000 0000000      


Q ss_pred             HHHHHHHHHHHhcc-chhh-hhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016902          189 YLYTVLYITGFGAA-GIRP-CVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM  254 (380)
Q Consensus       189 ~l~~~l~l~g~g~g-~~~~-~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~  254 (380)
                      +.+...++.+=-.| ...+ .-.++..|.+..++      -.+++.++..+.|+|..++..+..++.+
T Consensus       144 Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~e------AKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  144 WTFSLFYVMAELWGSVVLSLLFWGFANEITTVEE------AKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00111122211112 2122 34788888888766      7889999999999999999888888766

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=90.75  E-value=21  Score=36.28  Aligned_cols=168  Identities=11%  Similarity=0.030  Sum_probs=92.5

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCC---HHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcchhHHHHHH
Q 016902           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKS---FADSSNAVNNFLG-ISQASSVLGGFLADAYLGRYWTIAIF  142 (380)
Q Consensus        67 ~~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s---~~~a~~~~~~~~~-~~~~~~l~~g~lsD~~~GR~~~i~i~  142 (380)
                      -|+.+..+.+..+|-.+.++.+-     -+.+.+.++   +.....+=+.... .+.+..++-+++.+++ -|.+++.+.
T Consensus        25 E~~kflpl~Ll~f~I~~ny~~lR-----~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~l-t~~~vF~~~   98 (509)
T COG3202          25 ELKKFLPLALLFFCILFNYNLLR-----SLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNIL-TREKVFYII   98 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-----HhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhc-CHHHHHHHH
Confidence            46667777777666655554222     233333333   3334444444444 5667778889999997 888888777


Q ss_pred             HHHHHHHHHHHHhhhhcccCCCCCCcccccccccC-----CCCCCcc--hhH----HHHHHHHHHHHHhc-cch-hhhhh
Q 016902          143 TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLG-----SCEPAKS--WQM----LYLYTVLYITGFGA-AGI-RPCVS  209 (380)
Q Consensus       143 ~~l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~-----~c~~~~~--~~~----~~l~~~l~l~g~g~-g~~-~~~~~  209 (380)
                      ...+....+++++.-+     |.   |+.-|++..     ....|..  ...    .+-+...++.+=-. ... .-.-.
T Consensus        99 ~~~F~~fF~LFa~Vi~-----P~---~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw  170 (509)
T COG3202          99 LGFFLGFFALFAFVIY-----PY---KDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFW  170 (509)
T ss_pred             HHHHHHHHHHHHHHHh-----cc---ccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHH
Confidence            7666666666665432     10   110011100     0001100  000    01112222222111 111 12345


Q ss_pred             hHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016902          210 SFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM  254 (380)
Q Consensus       210 ~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~  254 (380)
                      .+.-|+++.++      -.+++..++...|++..++..+..++..
T Consensus       171 ~faNeitt~~e------akRFy~lf~l~~ni~lllsg~~~~~~~k  209 (509)
T COG3202         171 QFANEITTIEE------AKRFYPLFGLGANISLLLSGEVTSWLSK  209 (509)
T ss_pred             HHHHHhhhHHH------hhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            67778888766      7899999999999999999888888765

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=90.10  E-value=9.7  Score=37.72  Aligned_cols=121  Identities=9%  Similarity=0.054  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHH
Q 016902          118 SQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYIT  197 (380)
Q Consensus       118 ~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~  197 (380)
                      ..+.-++.-+..++. --..=+.+..++..+|+++.+++                            .+..+-++|..+.
T Consensus        72 ~l~~Kl~aP~fi~~v-~y~~Ri~~~~~l~~~g~l~va~~----------------------------~~v~~~l~Gv~la  122 (402)
T PF02487_consen   72 SLLVKLIAPFFIHRV-PYWIRILICVALSAAGMLLVAFS----------------------------PSVWVRLLGVVLA  122 (402)
T ss_pred             HHHHHHHhHhhhhhc-cchHHHHHHHHHHHHHHhheeec----------------------------cchhHHHHHHHHH
Confidence            333444555666654 32222334445666777776654                            2455566788888


Q ss_pred             HHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcch--hhHHHHHHHHHHHHHHHH
Q 016902          198 GFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG--WGSAFGALAIAMGISNML  275 (380)
Q Consensus       198 g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g--w~~~f~i~~~~~~~~~i~  275 (380)
                      +++.|.......++.+ -+++.          ..+.|..+...++++|...-..+.. .|  -+..+.+...+-++-++.
T Consensus       123 s~ssg~GE~tfL~lt~-~y~~~----------~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~  190 (402)
T PF02487_consen  123 SLSSGLGEVTFLSLTH-FYGKS----------SLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLS  190 (402)
T ss_pred             hhhhhhhHHHHHHHHH-hcCcc----------ccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHH
Confidence            8888887777666644 45421          2344454555556666554433444 44  455666655554444444


Q ss_pred             HHhh
Q 016902          276 FFIG  279 (380)
Q Consensus       276 ~~~~  279 (380)
                      +++.
T Consensus       191 ~f~~  194 (402)
T PF02487_consen  191 YFFL  194 (402)
T ss_pred             HHHh
Confidence            4443

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PRK10263 DNA translocase FtsK; Provisional

Probab=89.85  E-value=4.8  Score=45.29  Aligned_cols=34  Identities=15%  Similarity=-0.013  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHH
Q 016902          240 VGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISN  273 (380)
Q Consensus       240 iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~  273 (380)
                      .|+++|.++..++...+|..-+.++..+++++++
T Consensus       142 gGGIIG~lLs~lL~~LfG~vGa~LILLlllLIGL  175 (1355)
T PRK10263        142 SGGVIGSLLSTTLQPLLHSSGGTIALLCVWAAGL  175 (1355)
T ss_pred             ccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            3666666666666665565434444444444333

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=88.06  E-value=3.8  Score=41.05  Aligned_cols=55  Identities=13%  Similarity=0.002  Sum_probs=40.9

Q ss_pred             HHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcch
Q 016902          197 TGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG  257 (380)
Q Consensus       197 ~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g  257 (380)
                      ..+..+...-....+.+++-|+..      -++.+++.....|+|..++..++.++.+..+
T Consensus       328 ~~~~~~i~~mP~lvl~a~lcP~G~------Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~  382 (433)
T PF03092_consen  328 EEVIGMIAFMPSLVLAARLCPKGS------EGTVYALLASFSNLGSSVSSTLGAFLMELFG  382 (433)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            333334444555677899999877      7899999988999999998888888765443

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=85.51  E-value=46  Score=34.02  Aligned_cols=70  Identities=17%  Similarity=0.166  Sum_probs=47.4

Q ss_pred             HHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHH
Q 016902          197 TGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGI  271 (380)
Q Consensus       197 ~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~  271 (380)
                      .++.........-..+.+++|+..     ....+++-+....++-+.+-.++++.+....||..+..+.-+.+++
T Consensus       292 Ygi~inLvE~~wK~~lk~~~~~~~-----~ysafmG~~~~~tGivtii~~~l~~~iir~~GW~~~AlitPiv~li  361 (491)
T PF03219_consen  292 YGISINLVEVVWKSQLKQLYPDPN-----DYSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWRTAALITPIVILI  361 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHH
Confidence            444445555666677778888654     2788888877666666666667778888899999887664333333

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=82.86  E-value=21  Score=27.97  Aligned_cols=45  Identities=18%  Similarity=0.080  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 016902          107 SSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG  152 (380)
Q Consensus       107 a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~  152 (380)
                      .+........+..+++.+.+.+.|.. |.+..+.+...+.+++.+.
T Consensus        89 ~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  133 (141)
T TIGR00880        89 LGLMSAGIALGPLLGPPLGGVLAQFL-GWRAPFLFLAILALAAFIL  133 (141)
T ss_pred             HHHHHHhHHHHHHHhHHhHHHHhccc-chHHHHHHHHHHHHHHHHH
Confidence            34555666788888899999999986 8777776665555544433

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=82.85  E-value=55  Score=32.85  Aligned_cols=31  Identities=13%  Similarity=0.168  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHhccchhhhhhhHhhccCCC
Q 016902          187 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDE  218 (380)
Q Consensus       187 ~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~  218 (380)
                      ....++..++.|++.+..+....++.+ .||+
T Consensus       106 f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~  136 (437)
T TIGR00939       106 FVTTMASVVIINSGMALLQGSLFGLAG-VFPS  136 (437)
T ss_pred             HHHHHHHHHHHHhhhhhhcccchhhcc-cCCH
Confidence            444455556778888888877777655 6774

>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.37  E-value=3.8  Score=31.32  Aligned_cols=55  Identities=22%  Similarity=0.288  Sum_probs=31.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHhhcccccc
Q 016902          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRH  285 (380)
Q Consensus       228 ~~~~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~~~~  285 (380)
                      ..+=-++.+...+|+++|. +.|+.++.++|.  .++..+..++.+++.+--.|+|++
T Consensus        22 kkaEr~~q~ilti~aiVg~-i~Gf~~Qqls~t--vy~vg~~~v~t~li~LPpwP~y~r   76 (101)
T KOG4112|consen   22 KKAERFQQLILTIGAIVGF-IYGFAQQQLSVT--VYIVGAGFVFTLLITLPPWPWYRR   76 (101)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH--HHHHHHHHHHHHHhcCCCchhhhc
Confidence            3444567888889998884 556666656653  333333333444444444455554

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=81.85  E-value=25  Score=35.37  Aligned_cols=53  Identities=13%  Similarity=0.187  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHH
Q 016902          187 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA  245 (380)
Q Consensus       187 ~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~  245 (380)
                      -...++..++.|+..|-.......++.+..+++   |   |..+-++..++.++|-.+|
T Consensus       372 d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~---e---~e~aG~~~~~~l~~Gl~~G  424 (437)
T TIGR00939       372 DAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPH---E---REVAGALMVIFLLVGLALG  424 (437)
T ss_pred             cHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHH---H---HHHHHHHHHHHHHHHHHHH
Confidence            455566678899999988888888888887743   3   3333333444444444444

>TIGR00806 rfc RFC reduced folate carrier

Probab=81.78  E-value=27  Score=35.67  Aligned_cols=90  Identities=12%  Similarity=0.063  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHH
Q 016902          112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLY  191 (380)
Q Consensus       112 ~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~  191 (380)
                      .+..+.+.+..++.|++-.++ .|.--+.++.+..+.|.+++..+ .                         +.+.+..|
T Consensus       305 A~~tllga~~a~~ag~~~~~w-~~~~~l~l~v~s~~~~gll~~m~-~-------------------------t~~Iw~~Y  357 (511)
T TIGR00806       305 AASTLLGAITSFIAGFVNIRW-ARWSKLLIAVVSAIQAGLVFWMS-Q-------------------------SHDIWVLY  357 (511)
T ss_pred             HHHHHHHHHHHHHHHhhcCCc-hhhHHHHHHHHHHHHHHHhhhhh-c-------------------------ccchHHHH
Confidence            334455566777888886665 55444444444343333333322 1                         14688888


Q ss_pred             HHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHH
Q 016902          192 TVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF  234 (380)
Q Consensus       192 ~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~  234 (380)
                      ++.++.........+....-+|.-...+.      -+-.|++.
T Consensus       358 ~~yvlf~~~y~flitia~~~iA~~L~~~~------~aLvFGiN  394 (511)
T TIGR00806       358 VTYVLFRGIYQFLVPIATFQIASSLSKEL------CALVFGIN  394 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccc------eEEEEecH
Confidence            88888888877877887777787777665      56666653

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	380
2xut_A	524	Crystal Structure Of A Proton Dependent Oligopeptid		2e-11
4aps_A	491	Crystal Structure Of A Pot Family Peptide Transport		1e-04

>pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 96/222 (43%), Gaps = 36/222 (16%)
Query: 73  FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFAD------SSNAVNNFLGISQASSVLGG 126
           +I  +E  ER +++G+   +  F+   +  S  +      + +  ++F+       +LGG
Sbjct: 16  YIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGG 75
Query: 127 FLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQ 186
           ++AD + G+Y TI   + IY  G       A + +F  +                     
Sbjct: 76  WIADRFFGKYNTILWLSLIYCVG------HAFLAIFEHSVQG------------------ 111
Query: 187 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF 246
               YT L++   G+ GI+P VSSF  DQFD+ +K       + F+ FY ++  G+  A 
Sbjct: 112 ---FYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLA---QKAFDMFYFTINFGSFFAS 165
Query: 247 TLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLP 288
             +  +    G   AFG   + M ++ + F++G   Y H  P
Sbjct: 166 LSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPP 207

>pdb|4APS|A Chain A, Crystal Structure Of A Pot Family Peptide Transporter In An Inward Open Conformation. Length = 491

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 90/211 (42%), Gaps = 37/211 (17%)
Query: 74  IFGNEMAERMAYFGLSVNMVTFMFYV-----MHKSFADSSNAVNNFLGISQASSVLGGFL 128
           +F  EM ER +Y+G+   ++ +M+++     +H + A +++ +  +  +   S  +GGF+
Sbjct: 18  LFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFV 77
Query: 129 ADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQML 188
           AD  +G     A+F    L  L  I L                 S L GS          
Sbjct: 78  ADRIIGA--RPAVFWGGVLIMLGHIVLALPFGA-----------SALFGSI--------- 115
Query: 189 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL 248
               +L I G G   ++P VS+     +DE  +      D  F+ F   + +GA +A  +
Sbjct: 116 ----ILIIIGTGF--LKPNVSTLVGTLYDEHDR----RRDAGFSIFVFGINLGAFIAPLI 165
Query: 249 VVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279
           V   Q   G+  AF   AI M I  ++++ G
Sbjct: 166 VGAAQEAAGYHVAFSLAAIGMFIGLLVYYFG 196

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	380
2xut_A	524	Proton/peptide symporter family protein; transport	7e-73
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	3e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524

 Score =  235 bits (601), Expect = 7e-73
 Identities = 66/327 (20%), Positives = 122/327 (37%), Gaps = 45/327 (13%)

Query: 64  KTGGWIAAL-FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSF------ADSSNAVNNFLG 116
               W   + +I  +E  ER +++G+   +  F+   +  S       A + +  ++F+ 
Sbjct: 6   DAPKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVI 65

Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
                 +LGG++AD + G+Y TI   + IY  G   + +                     
Sbjct: 66  GVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEH------------------ 107

Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
                     +   YT L++   G+ GI+P VSSF  DQFD+     K+   + F+ FY 
Sbjct: 108 ---------SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQ---SNKSLAQKAFDMFYF 155

Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
           ++  G+  A   +  +    G   AFG   + M ++ + F++G   Y H  P        
Sbjct: 156 TINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGF 215

Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAA------LE 350
             V+ +A   +     +  L  +  + G  SA      I        L  A       + 
Sbjct: 216 LPVIRSALLTKVEGKGNIGL--VLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVG 273

Query: 351 LKEDVINPSPWKLCTVTQVEEVKTLVR 377
               +      K      V+ V++++R
Sbjct: 274 AGASLQLERARKSHPDAAVDGVRSVLR 300

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491

 Score = 75.9 bits (187), Expect = 3e-15
 Identities = 41/217 (18%), Positives = 85/217 (39%), Gaps = 37/217 (17%)

Query: 74  IFGNEMAERMAYFGLSVNMVTFMFYVMHK-----SFADSSNAVNNFLGISQASSVLGGFL 128
           +F  EM ER +Y+G+   ++ +M++++       + A +++ +  +  +   S  +GGF+
Sbjct: 18  LFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFV 77

Query: 129 ADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQML 188
           AD  +G    +     + + G   +                            A  +   
Sbjct: 78  ADRIIGARPAVFWGGVLIMLGHIVL----------------------------ALPFGAS 109

Query: 189 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL 248
            L+  + +   G   ++P VS+     +DE  +      D  F+ F   + +GA +A  +
Sbjct: 110 ALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR----RRDAGFSIFVFGINLGAFIAPLI 165

Query: 249 VVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRH 285
           V   Q   G+  AF   AI M I  ++++ G      
Sbjct: 166 VGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLD 202

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 7e-05
 Identities = 54/360 (15%), Positives = 102/360 (28%), Gaps = 112/360 (31%)

Query: 57  KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
           K + D+ K+        I   E  + +     +V+    +F+ +          V  F+ 
Sbjct: 36  KDVQDMPKS--------ILSKEEIDHIIMSKDAVSGTLRLFWTLLSK---QEEMVQKFVE 84

Query: 117 ISQASSVLG---GFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR-- 171
                 VL     FL           ++ T +Y+       L    +VF     N  R  
Sbjct: 85  -----EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD--RLYNDNQVFAK--YNVSRLQ 135

Query: 172 ----ISQLLGSCEPAKSWQMLYLYTVLY-ITGFG----AAGIRPCVSSFGADQFDERSKD 222
               + Q L    PAK         ++  + G G    A                +    
Sbjct: 136 PYLKLRQALLELRPAK-------NVLIDGVLGSGKTWVAL---------------DVCLS 173

Query: 223 YKTHLDRFFNFFYLSV----TVGAIVAFTLVVYIQMEHGWGS-AFGALAIAMGISN---- 273
           YK      F  F+L++    +   ++     +  Q++  W S +  +  I + I +    
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233

Query: 274 MLFFIGTPLYRHRL---------------PGGSPL---TR---VAQVLVAAFRKR----- 307
           +   + +  Y + L                    +   TR   V   L AA         
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293

Query: 308 -HAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTV 366
                +  E+  L                      + LD    +L  +V+  +P +L  +
Sbjct: 294 HSMTLTPDEVKSLLL--------------------KYLDCRPQDLPREVLTTNPRRLSII 333

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	380
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.83
2xut_A	524	Proton/peptide symporter family protein; transport	99.82
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.76
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.67
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.63
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.54
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.52
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.44
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.4
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.23
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.21
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.18
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.88
2xut_A	524	Proton/peptide symporter family protein; transport	98.28

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.83  E-value=6.4e-19  Score=175.76  Aligned_cols=185  Identities=23%  Similarity=0.395  Sum_probs=161.7

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcchhHH
Q 016902           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYV-----MHKSFADSSNAVNNFLGISQASSVLGGFLADA-YLGRYWT  138 (380)
Q Consensus        65 ~~~~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~-----~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~-~~GR~~~  138 (380)
                      +++++..+.+++..++..+++|++..+++.|+++.     +|++..+.+++.+.+.++..++.+++|+++|| + |||++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~   87 (491)
T 4aps_A            9 FGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPA   87 (491)
T ss_dssp             --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHH
T ss_pred             hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHH
Confidence            44556788888899999999999999999999998     99999999999999999999999999999999 6 99999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCC
Q 016902          139 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE  218 (380)
Q Consensus       139 i~i~~~l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~  218 (380)
                      ++++.++..++.++++++                            .+...+++++++.|+|.|+..++..++++|.+|+
T Consensus        88 ~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~  139 (491)
T 4aps_A           88 VFWGGVLIMLGHIVLALP----------------------------FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDE  139 (491)
T ss_dssp             HHHHHHHHHHHHHHHHSC----------------------------CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHHHHHHHh----------------------------hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCc
Confidence            999999999998887764                            2456688899999999999999999999999997


Q ss_pred             CCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHhhccc
Q 016902          219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL  282 (380)
Q Consensus       219 ~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~  282 (380)
                      ++.    .|+.++++++.+.++|..++|.+++++.+..||++.|++.++..++++++++...++
T Consensus       140 ~~~----~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~  199 (491)
T 4aps_A          140 HDR----RRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKK  199 (491)
T ss_dssp             CTT----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccc----cceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence            652    277889999999999999999999999999999999999888777776665544433

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.82  E-value=2.4e-19  Score=180.50  Aligned_cols=210  Identities=25%  Similarity=0.461  Sum_probs=160.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 016902           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMH------KSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIF  142 (380)
Q Consensus        69 ~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~------~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~  142 (380)
                      +.++.+.+..++..+++|++..+++.|+++++|      ++..+.+++.+.+.++..++.+++|+++||++|||+++.++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~   91 (524)
T 2xut_A           12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWL   91 (524)
T ss_dssp             -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence            445677788899999999999999999999999      99999999999999999999999999999966999999999


Q ss_pred             HHHHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCch
Q 016902          143 TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD  222 (380)
Q Consensus       143 ~~l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~  222 (380)
                      .++..++.+++.++.                           .+...+++++++.|+|.+...++..++++|.+|+++  
T Consensus        92 ~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~--  142 (524)
T 2xut_A           92 SLIYCVGHAFLAIFE---------------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN--  142 (524)
T ss_dssp             HHHHHHHHHHHHHTS---------------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT--
T ss_pred             HHHHHHHHHHHHHhc---------------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc--
Confidence            999999888877641                           146778889999999999999999999999999766  


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHhhcccccccCCCCCccchHHHHHHH
Q 016902          223 YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVA  302 (380)
Q Consensus       223 ~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~  302 (380)
                       +..+...+++++...++|..+++.+++++.+..||++.|++.+++.++++++++...+.++..+|++++..+..+.+..
T Consensus       143 -r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (524)
T 2xut_A          143 -KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRS  221 (524)
T ss_dssp             -TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC---------------
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHH
Confidence             2223556777999999999999999999998889999999988887777666655555554444544444455555556


Q ss_pred             HHhhcc
Q 016902          303 AFRKRH  308 (380)
Q Consensus       303 a~~~r~  308 (380)
                      ++|+++
T Consensus       222 ~~~~~~  227 (524)
T 2xut_A          222 ALLTKV  227 (524)
T ss_dssp             -----C
T ss_pred             HHhhhh
Confidence            666554

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.76  E-value=1.5e-16  Score=155.78  Aligned_cols=181  Identities=12%  Similarity=-0.011  Sum_probs=148.6

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 016902           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (380)
Q Consensus        65 ~~~~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~  144 (380)
                      +++++.+..+.+..++..+..+.+ ..+..++.+++|++..+.+++.+.+.++..++.+++|+++||+ |||++++++.+
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~   99 (438)
T 3o7q_A           22 RSYIIPFALLCSLFFLWAVANNLN-DILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLF   99 (438)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHH
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHH
Confidence            445666666666666666665544 4455668889999999999999999999999999999999998 99999999999


Q ss_pred             HHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhh
Q 016902          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (380)
Q Consensus       145 l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~  224 (380)
                      +..++.+++.+....                         .+...+++++++.|+|.|...+...++++|.+|+++    
T Consensus       100 ~~~~~~~~~~~~~~~-------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~----  150 (438)
T 3o7q_A          100 LYALGAALFWPAAEI-------------------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS----  150 (438)
T ss_dssp             HHHHHHHHHHHHHHT-------------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT----
T ss_pred             HHHHHHHHHHhcccc-------------------------ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh----
Confidence            999998888432110                         357788999999999999999999999999999888    


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHhh-hcch-------------------------hhHHHHHHHHHHHHHHHHHHh
Q 016902          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQ-MEHG-------------------------WGSAFGALAIAMGISNMLFFI  278 (380)
Q Consensus       225 ~~r~~~~~~~~~~~~iG~~i~~~i~~~i~-~~~g-------------------------w~~~f~i~~~~~~~~~i~~~~  278 (380)
                        |+..+++++....+|..+++.+++++. +..+                         |++.|++.+++.++..++++.
T Consensus       151 --r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  228 (438)
T 3o7q_A          151 --GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIML  228 (438)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence              999999999999999999999999887 5544                         999998766665555444433

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.67  E-value=5.2e-16  Score=152.32  Aligned_cols=180  Identities=12%  Similarity=0.058  Sum_probs=146.5

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 016902           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY  146 (380)
Q Consensus        67 ~~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~  146 (380)
                      +|+.++.+.+..++..+..+.+... ..++.+++ .+..+.+++.+.+.++..++.+++|+++||+ |||++++++.++.
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~  102 (451)
T 1pw4_A           26 RWQIFLGIFFGYAAYYLVRKNFALA-MPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILA  102 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSHHHH-HHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHH
Confidence            4555666666666666655544444 45566677 9999999999999999999999999999998 9999999999999


Q ss_pred             HHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhh
Q 016902          147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (380)
Q Consensus       147 ~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~  226 (380)
                      .++.+++.+....   .                     .+...+++++++.|+|.+...+...++++|.+|+++      
T Consensus       103 ~~~~~~~~~~~~~---~---------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------  152 (451)
T 1pw4_A          103 AAVMLFMGFVPWA---T---------------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------  152 (451)
T ss_dssp             HHHHHHHHHCHHH---H---------------------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------
T ss_pred             HHHHHHHHhhhhc---c---------------------ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------
Confidence            9999888772100   0                     245568889999999999999999999999999777      


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhhcch-hhHHHHHHHHHHHHHHHHHHhh
Q 016902          227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIG  279 (380)
Q Consensus       227 r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g-w~~~f~i~~~~~~~~~i~~~~~  279 (380)
                      |+..+++++.+..+|..+++.+++++.+..| |++.|++.+++.++..++.+..
T Consensus       153 r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~  206 (451)
T 1pw4_A          153 RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAM  206 (451)
T ss_dssp             HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999888888 9999998887766655544443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.63  E-value=2.5e-15  Score=144.39  Aligned_cols=166  Identities=12%  Similarity=0.100  Sum_probs=141.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 016902           73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG  152 (380)
Q Consensus        73 ~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~  152 (380)
                      .+.+..++..+....+...+ +.+.+++|.+..+.+.+.+.+.++..++.+++|+++||+ |||++++++.++..++.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~   81 (375)
T 2gfp_A            4 MLVLLVAVGQMAQTIYIPAI-ADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATLV   81 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-HHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhh-HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHH
Confidence            34445555555555444444 446778999999999999999999999999999999998 9999999999999999888


Q ss_pred             HHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHH
Q 016902          153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN  232 (380)
Q Consensus       153 l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~  232 (380)
                      +.++                            .+...+++++++.|++.+...+...++..|.+|+++      |++.++
T Consensus        82 ~~~~----------------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~  127 (375)
T 2gfp_A           82 AVTT----------------------------SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANS  127 (375)
T ss_dssp             HHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHH
T ss_pred             HHHh----------------------------ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHH
Confidence            8775                            457788899999999999999999999999999877      999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHH
Q 016902          233 FFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM  274 (380)
Q Consensus       233 ~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i  274 (380)
                      +++....+|..+++.+++++.+..||++.|++.++..++..+
T Consensus       128 ~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  169 (375)
T 2gfp_A          128 LLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF  169 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999888999999987776665544

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.54  E-value=3.5e-13  Score=132.07  Aligned_cols=180  Identities=15%  Similarity=0.122  Sum_probs=147.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chhHHHHHHHHHH
Q 016902           68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL-GRYWTIAIFTTIY  146 (380)
Q Consensus        68 ~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~-GR~~~i~i~~~l~  146 (380)
                      .+.++.+++..++..+.++++..+++.|+++.+|++..+++.+.+...++..++.++.|+++||+. |||+.+.++.++.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~  330 (451)
T 1pw4_A          251 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTL  330 (451)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence            355677777778888888889999999999889999999999999999999999999999999942 8888888777665


Q ss_pred             H-HHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhh
Q 016902          147 L-AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (380)
Q Consensus       147 ~-lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~  225 (380)
                      . ++.+++.+.       ++                   .+...+++..++.|++.++..+....+..|.+|++.     
T Consensus       331 ~~~~~~~~~~~-------~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-----  379 (451)
T 1pw4_A          331 VTIATIVYWMN-------PA-------------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA-----  379 (451)
T ss_dssp             HHHHHHHTTSC-------CT-------------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH-----
T ss_pred             HHHHHHHHHHh-------cc-------------------cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh-----
Confidence            5 555544332       10                   245566677788889888888888999999999877     


Q ss_pred             hhhhHHHHHHHHHHH-HHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHhh
Q 016902          226 HLDRFFNFFYLSVTV-GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG  279 (380)
Q Consensus       226 ~r~~~~~~~~~~~~i-G~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~~~  279 (380)
                       |++.+++++...++ |..+++.+.+++.+..||...|++.+++.+++.++.+..
T Consensus       380 -~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          380 -AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV  433 (451)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence             99999999999999 999999999999999999999998888777776655443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.52  E-value=2.9e-13  Score=134.51  Aligned_cols=150  Identities=13%  Similarity=0.159  Sum_probs=112.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcc
Q 016902          105 ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKS  184 (380)
Q Consensus       105 ~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~  184 (380)
                      ...+++++.+.++..++++++|+++||+ |||++++++.+++.++.++.+.+.........  ...        -...-.
T Consensus        55 ~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~--~~~--------~~~~~a  123 (491)
T 4gc0_A           55 SLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINP--DNT--------VPVYLA  123 (491)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSS--SSS--------CCGGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc--hhH--------HHHHHh
Confidence            3456788889999999999999999998 99999999999999999988754211000000  000        000011


Q ss_pred             hhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhc--------c
Q 016902          185 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME--------H  256 (380)
Q Consensus       185 ~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~--------~  256 (380)
                      .+...++++|++.|+|.|+..+..+.+++|..|++.      |+...++++.+..+|.++++.++..+...        .
T Consensus       124 ~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  197 (491)
T 4gc0_A          124 GYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTD  197 (491)
T ss_dssp             GCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTT
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccch
Confidence            468889999999999999999999999999999887      99999999999999998888777665432        2


Q ss_pred             hhhHHHHHHHHHHHH
Q 016902          257 GWGSAFGALAIAMGI  271 (380)
Q Consensus       257 gw~~~f~i~~~~~~~  271 (380)
                      +|++.+.+..+..++
T Consensus       198 ~~~~~~~~~~~~~~~  212 (491)
T 4gc0_A          198 GWRYMFASECIPALL  212 (491)
T ss_dssp             HHHHHHHTTHHHHHH
T ss_pred             hhHHHhhhhhhhhhh
Confidence            466666554444433

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.44  E-value=7.1e-12  Score=122.34  Aligned_cols=167  Identities=10%  Similarity=0.009  Sum_probs=131.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHH-HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 016902           70 AALFIFGNEMAERMAYFGLSVNMVTF-MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA  148 (380)
Q Consensus        70 ~~~~i~~~~~~~~~~~~~i~~~l~~y-l~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~l  148 (380)
                      .++..++..++.....+++..+++.| +++.+|++..+++...+.+.++..++.+++|+++||+ |||+++.++.++..+
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~  337 (438)
T 3o7q_A          259 HWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMA  337 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence            45556666666777777888899999 8888899999999999999999999999999999997 999999999888888


Q ss_pred             HHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhh
Q 016902          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD  228 (380)
Q Consensus       149 g~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~  228 (380)
                      +.+++...                            .+.. .++..++.+++.+...+...++..|.++++       ++
T Consensus       338 ~~~~~~~~----------------------------~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~  381 (438)
T 3o7q_A          338 LCLISAFA----------------------------GGHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TK  381 (438)
T ss_dssp             HHHHHHHC----------------------------CHHH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HH
T ss_pred             HHHHHHHc----------------------------CCcH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-------cc
Confidence            77666553                            1222 234457788888888999999989998843       34


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhcch-hhHHHHHHHHHHHHHHH
Q 016902          229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNM  274 (380)
Q Consensus       229 ~~~~~~~~~~~iG~~i~~~i~~~i~~~~g-w~~~f~i~~~~~~~~~i  274 (380)
                      .+.++.. ...+|..++|.+.+++.+..| ++..|++.+++.++.++
T Consensus       382 ~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~  427 (438)
T 3o7q_A          382 YGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI  427 (438)
T ss_dssp             HHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred             chhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            4444444 456999999999999999988 99999877665554433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.40  E-value=4.3e-12  Score=124.24  Aligned_cols=169  Identities=10%  Similarity=0.039  Sum_probs=120.7

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHhcCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 016902           75 FGNEMAERMAYFGLSVNMVTFMFYVMHKS---FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT  151 (380)
Q Consensus        75 ~~~~~~~~~~~~~i~~~l~~yl~~~~~~s---~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~  151 (380)
                      ++..++....++....+++.|+.+.++..   ....+...++..++..++.+++|+++||+ |||+++.++.++..++.+
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~~~~~~  304 (417)
T 2cfq_A          226 SLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRII  304 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHHH
Confidence            33333333444445566788887766532   23334555555666777889999999998 999999888877777665


Q ss_pred             HHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHH
Q 016902          152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF  231 (380)
Q Consensus       152 ~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~  231 (380)
                      ++.+.                            .+...+++..++.+++.+...+....+.+|.+|++.      |++.+
T Consensus       305 ~~~~~----------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~  350 (417)
T 2cfq_A          305 GSSFA----------------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIY  350 (417)
T ss_dssp             HHTTC----------------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HHHHH
T ss_pred             HHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHH
Confidence            55432                            123345555556677766666777889999999776      89988


Q ss_pred             HH-HHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHh
Q 016902          232 NF-FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (380)
Q Consensus       232 ~~-~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~~  278 (380)
                      ++ ++....+|+.++|.+++++.+..|+...|.+.+++.+++.++.+.
T Consensus       351 g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~  398 (417)
T 2cfq_A          351 LVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVF  398 (417)
T ss_dssp             HHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHh
Confidence            88 577888999999999999988888888888877777766655443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.23  E-value=2.3e-11  Score=120.93  Aligned_cols=184  Identities=12%  Similarity=0.017  Sum_probs=128.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHH-----HHHHHH
Q 016902           72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA-----IFTTIY  146 (380)
Q Consensus        72 ~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~-----i~~~l~  146 (380)
                      +.+.+..++..+.++....+++.|+.+.++.+....+.......++..++.++.|+++||+ |||+...     ++.++.
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~~  364 (491)
T 4aps_A          286 IPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMFA  364 (491)
T ss_dssp             HHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHHH
Confidence            3344444444455555666788899888888766666667777777788888999999997 9876544     666666


Q ss_pred             HHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhh
Q 016902          147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (380)
Q Consensus       147 ~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~  226 (380)
                      .++.+++.+......-                   ....+...++++.++.++|.+...+....+..|.+|++.      
T Consensus       365 ~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------  419 (491)
T 4aps_A          365 GLSFLLMAIPGALYGT-------------------SGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------  419 (491)
T ss_dssp             HHHHTTTHHHHHHCCC-------------------CTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------
T ss_pred             HHHHHHHHHHHHhcCC-------------------CCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------
Confidence            6665555443211000                   000234556677788899998888999999999999988      


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHhhccc
Q 016902          227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL  282 (380)
Q Consensus       227 r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~  282 (380)
                      |+.+.++++...++|..+++.+.+++.+. ++.+.|++.+++.+++.++++...+.
T Consensus       420 ~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (491)
T 4aps_A          420 NSQMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKR  474 (491)
T ss_dssp             SSSSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998888754 66777877777666666655554443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.21  E-value=1.2e-09  Score=108.18  Aligned_cols=165  Identities=10%  Similarity=0.021  Sum_probs=114.8

Q ss_pred             HHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCCC
Q 016902           88 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD  167 (380)
Q Consensus        88 i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~~  167 (380)
                      ...+..+++.+..+.+............+...++.++++++.||+ |||+.++.+..+..++++.+.......   .+  
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~~~~l~~~~~~~---~~--  368 (491)
T 4gc0_A          295 VVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFYTQ---AP--  368 (491)
T ss_dssp             HHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHHHHHHHHHHHTT---CC--
T ss_pred             HHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHHHHHHHHHHhcc---cc--
Confidence            334445667778888887777777777788888999999999998 999999999888888777665542200   00  


Q ss_pred             cccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHH
Q 016902          168 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT  247 (380)
Q Consensus       168 ~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~  247 (380)
                                       .....+.+..+..+++ .+..+....+.+|.||.+.      |+++.++.+....+|+.+++.
T Consensus       369 -----------------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~E~fPt~~------R~~~~g~~~~~~~~~~~i~~~  424 (491)
T 4gc0_A          369 -----------------GIVALLSMLFYVAAFA-MSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWLANYFVSW  424 (491)
T ss_dssp             -----------------HHHHHHHHHHHHHHHH-TTTTHHHHHHHHHSSCTTT------HHHHHHHHHHHHHHHHHHHHT
T ss_pred             -----------------hHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhCCHhH------HHHHHHHHHHHHHHHHHHHHH
Confidence                             1122222222223333 3344667789999999998      999999988888888888887


Q ss_pred             HHHHhhh------cchhhHHHHHHHHHHHHHHHHHHhhccc
Q 016902          248 LVVYIQM------EHGWGSAFGALAIAMGISNMLFFIGTPL  282 (380)
Q Consensus       248 i~~~i~~------~~gw~~~f~i~~~~~~~~~i~~~~~~~~  282 (380)
                      +..++.+      ..++.+.|++.+++.+++.++.++..|+
T Consensus       425 ~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PE  465 (491)
T 4gc0_A          425 TFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPE  465 (491)
T ss_dssp             HHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecC
Confidence            7766543      2345667787777777777666555554

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.18  E-value=2e-12  Score=126.69  Aligned_cols=169  Identities=10%  Similarity=-0.125  Sum_probs=109.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 016902           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (380)
Q Consensus        70 ~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg  149 (380)
                      ..+......++..+.+..+.+.++.|+++++|++..+.+.+.+.+.++..++.+++|+++||+ |||++++++.+++.++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~~   86 (417)
T 2cfq_A            8 NFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLVM   86 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTSC
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHH
Confidence            445555555555566666677899999999999999999999999999999999999999998 9999999888776543


Q ss_pred             HHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhH-HHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhh
Q 016902          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQM-LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD  228 (380)
Q Consensus       150 ~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~-~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~  228 (380)
                      ...+......                         ... ..++.++.+.+++.|...+...+...+..++.    .++++
T Consensus        87 ~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----~~~~~  137 (417)
T 2cfq_A           87 FAPFFIFIFG-------------------------PLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV----SRRSN  137 (417)
T ss_dssp             HHHHHHHTHH-------------------------HHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHH----HHHHT
T ss_pred             HHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh----hhhcc
Confidence            2222111000                         000 01122333333333333333333333332211    11255


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHH
Q 016902          229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAM  269 (380)
Q Consensus       229 ~~~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~  269 (380)
                      ..++..+...++|..++|.+++++.+ .+|++.|++.++..
T Consensus       138 ~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~  177 (417)
T 2cfq_A          138 FEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCA  177 (417)
T ss_dssp             CCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTT
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHH
Confidence            55666666778899999999998876 57999988765553

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.88  E-value=6.3e-10  Score=106.48  Aligned_cols=164  Identities=12%  Similarity=-0.098  Sum_probs=121.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH-HH
Q 016902           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI-YL  147 (380)
Q Consensus        69 ~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l-~~  147 (380)
                      +..+...+..++.....+++..+++.|+++.+|++..+++.+.....++..++.++.++++||+ ||  .+.++..+ ..
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~--~~~~~~~~~~~  275 (375)
T 2gfp_A          199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-ST--LMWQSVICCLL  275 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HH--HHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH--HHHHHHHHHHH
Confidence            4456666667777777778888888899888999999999999988899999999999999997 77  22333322 22


Q ss_pred             HHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhh
Q 016902          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (380)
Q Consensus       148 lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r  227 (380)
                      ++..++.....     +                   ..+...+++..++.+++.+...+....+..|.+| ++      |
T Consensus       276 ~~~~~~~~~~~-----~-------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~  324 (375)
T 2gfp_A          276 AGLLMWIPDWF-----G-------------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------A  324 (375)
T ss_dssp             TSSSSSHHHHH-----H-------------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------H
T ss_pred             HHHHHHHHhhh-----c-------------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------c
Confidence            22221111100     0                   0244556677778889999989999999999987 55      8


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHH
Q 016902          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA  266 (380)
Q Consensus       228 ~~~~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~  266 (380)
                      ++.+++++...++|..+++.+.+++.+..+|...+.+..
T Consensus       325 g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~  363 (375)
T 2gfp_A          325 GTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL  363 (375)
T ss_dssp             HHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            999999999999999999999999888777877776543

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.28  E-value=4.4e-07  Score=90.65  Aligned_cols=90  Identities=16%  Similarity=0.143  Sum_probs=67.2

Q ss_pred             hHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcc--hh-----
Q 016902          186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH--GW-----  258 (380)
Q Consensus       186 ~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~--gw-----  258 (380)
                      +...++++.++.++|.+...+....+..|.+|++.      |++.+++++....+|..+++.+.+++.+..  +|     
T Consensus       404 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~  477 (524)
T 2xut_A          404 SIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAM------KGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTG  477 (524)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTC------CTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH------HhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence            34456677788999999999999999999999888      999999999999999999999999987643  23     


Q ss_pred             ----hHHHHHHHHHHHHHHHHHHhhcc
Q 016902          259 ----GSAFGALAIAMGISNMLFFIGTP  281 (380)
Q Consensus       259 ----~~~f~i~~~~~~~~~i~~~~~~~  281 (380)
                          ...|++.+++.+++.++++...+
T Consensus       478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  504 (524)
T 2xut_A          478 MSVTAFQMFFFAGFAILAAIVFALYAR  504 (524)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHHHH
Confidence                22366666665555555444333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	380
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.64
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.48
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.43
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.35

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=1.1e-15  Score=146.92  Aligned_cols=159  Identities=11%  Similarity=0.046  Sum_probs=132.1

Q ss_pred             HhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcc
Q 016902           90 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC  169 (380)
Q Consensus        90 ~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~~~c  169 (380)
                      +.+.++++ ++|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..++.+++++.....         
T Consensus        45 ~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~~---------  113 (447)
T d1pw4a_          45 ALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWAT---------  113 (447)
T ss_dssp             HHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHCHHHH---------
T ss_pred             HHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHhhccccchhh---------
Confidence            34556665 6899999999999999999999999999999998 999999999999999888877642110         


Q ss_pred             cccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 016902          170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV  249 (380)
Q Consensus       170 ~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~  249 (380)
                                     .+...+++++++.|++.|...++..++++|.+|+++      |+..+++++.+..+|..+++.++
T Consensus       114 ---------------~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~~~  172 (447)
T d1pw4a_         114 ---------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGIPPLLF  172 (447)
T ss_dssp             ---------------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHHHHHHHHHHHTSHHHHH
T ss_pred             ---------------hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc------ccccccccccccchhhhhhhhhh
Confidence                           235568889999999999999999999999999877      99999999999999999999888


Q ss_pred             HHhhhc-chhhHHHHHHHHHHHHHHHHHHhhc
Q 016902          250 VYIQME-HGWGSAFGALAIAMGISNMLFFIGT  280 (380)
Q Consensus       250 ~~i~~~-~gw~~~f~i~~~~~~~~~i~~~~~~  280 (380)
                      +++... .+|++.|++.+++.++..++.+...
T Consensus       173 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  204 (447)
T d1pw4a_         173 LLGMAWFNDWHAALYMPAFCAILVALFAFAMM  204 (447)
T ss_dssp             HHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHC
T ss_pred             hhHhhhhhcccccchhhhhhHHHHHHHHHHhc
Confidence            876654 4799999887776665555544433

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=4.2e-13  Score=128.36  Aligned_cols=181  Identities=15%  Similarity=0.059  Sum_probs=137.2

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 016902           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY  146 (380)
Q Consensus        67 ~~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~  146 (380)
                      +.+.++.+....++.....+++..+++.|+.+.++++..+++.......++..++.+++|+++|++ +|++......+..
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~  325 (447)
T d1pw4a_         247 PNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFM  325 (447)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTCHHHHHHHHH
T ss_pred             cCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhc-cccccccccchhH
Confidence            345677777777888888888899999999999999999999999999999999999999999998 8765443333322


Q ss_pred             HHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhh
Q 016902          147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (380)
Q Consensus       147 ~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~  226 (380)
                      .+..+.+.+..    ..+.                   .+....++..++.|++.++..+....+..|.+|++.      
T Consensus       326 ~~~~~~~~~~~----~~~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------  376 (447)
T d1pw4a_         326 TLVTIATIVYW----MNPA-------------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------  376 (447)
T ss_dssp             HHHHHHHHHTT----SCCT-------------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------
T ss_pred             HHHHHHHHHHH----hccc-------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------
Confidence            22222222110    0011                   345566677778888888888899999999999877      


Q ss_pred             hhhHHHHHHHHHHH-HHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHH
Q 016902          227 LDRFFNFFYLSVTV-GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF  277 (380)
Q Consensus       227 r~~~~~~~~~~~~i-G~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~  277 (380)
                      |+++.++.+...++ |..+++.+.+++.+..||...|++.+++.+++.+++.
T Consensus       377 ~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~  428 (447)
T d1pw4a_         377 AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI  428 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence            99999998877776 5667899999999999999999877776666655443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.43  E-value=1.7e-12  Score=121.31  Aligned_cols=180  Identities=11%  Similarity=-0.096  Sum_probs=115.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 016902           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA  148 (380)
Q Consensus        69 ~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~l  148 (380)
                      |..|.+.+..++..+....+.+.++.|+++++|++..+.+++.+++.++..++.+++|+++||+ |||++++++..+..+
T Consensus         7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-grr~~l~~~~~~~~~   85 (417)
T d1pv7a_           7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV   85 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-TTCTHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence            4567777777777777766777888999999999999999999999999999999999999998 999999999888888


Q ss_pred             HHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhh
Q 016902          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD  228 (380)
Q Consensus       149 g~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~  228 (380)
                      +.+++.+....+                        ......++.+.+.+.+.+...........+..+++    ..++.
T Consensus        86 ~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  137 (417)
T d1pv7a_          86 MFAPFFIFIFGP------------------------LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV----SRRSN  137 (417)
T ss_dssp             THHHHHHHTHHH------------------------HHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHH----HHHHS
T ss_pred             HHHHHHHhhhhh------------------------hHHHHHHHHHHHhhhcccccccchhhcccccccch----hhhhH
Confidence            877776642100                        01111222233333333333222222222222211    11244


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHh
Q 016902          229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (380)
Q Consensus       229 ~~~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~~  278 (380)
                      ...+........+..+++.+++++.+. +|+..+.+......+..++.+.
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~  186 (417)
T d1pv7a_         138 FEFGRARMFGCVGWALGASIVGIMFTI-NNQFVFWLGSGCALILAVLLFF  186 (417)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHhhhhccccccccccccccccc-cccccccchhhHHHHHHHHHHH
Confidence            445556666777788888888887664 4444555444444433333333

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.35  E-value=7.9e-12  Score=116.59  Aligned_cols=143  Identities=10%  Similarity=0.023  Sum_probs=117.2

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCC
Q 016902          103 SFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPA  182 (380)
Q Consensus       103 s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~  182 (380)
                      +....+.......++..++..+.+++.||+ ||++++.++.++..++.+++...                          
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~--------------------------  309 (417)
T d1pv7a_         257 GTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFA--------------------------  309 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHTC--------------------------
T ss_pred             chhhhcccccccccccccchhhhhhhhccc-ccccchhhhHHHHHHhhhccccc--------------------------
Confidence            344556666777788888899999999998 99999999998888887776653                          


Q ss_pred             cchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHH-HHHHHHHHHHHHHHHHHhhhcchhhHH
Q 016902          183 KSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF-YLSVTVGAIVAFTLVVYIQMEHGWGSA  261 (380)
Q Consensus       183 ~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~-~~~~~iG~~i~~~i~~~i~~~~gw~~~  261 (380)
                        .+...+++..++.+++.+...+...++..|.+|++.      |++.++++ .+...+|..+++.+.+++.+..||++.
T Consensus       310 --~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~  381 (417)
T d1pv7a_         310 --TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGA  381 (417)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGG------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             --cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
Confidence              245667777788899999999999999999999887      99999984 566779999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhc
Q 016902          262 FGALAIAMGISNMLFFIGT  280 (380)
Q Consensus       262 f~i~~~~~~~~~i~~~~~~  280 (380)
                      |++.+++.++..++.++..
T Consensus       382 ~~~~~~~~~~~~~~~~~~l  400 (417)
T d1pv7a_         382 YLVLGLVALGFTLISVFTL  400 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHhh
Confidence            9888777766666554443