Citrus Sinensis ID: 016903
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 380 | 2.2.26 [Sep-21-2011] | |||||||
| Q54M22 | 441 | 2-oxoisovalerate dehydrog | yes | no | 0.955 | 0.823 | 0.502 | 1e-111 | |
| O45924 | 431 | 2-oxoisovalerate dehydrog | yes | no | 0.955 | 0.842 | 0.509 | 1e-109 | |
| A5A6H9 | 445 | 2-oxoisovalerate dehydrog | yes | no | 0.986 | 0.842 | 0.485 | 1e-107 | |
| Q8HXY4 | 445 | 2-oxoisovalerate dehydrog | N/A | no | 0.986 | 0.842 | 0.482 | 1e-107 | |
| P12694 | 445 | 2-oxoisovalerate dehydrog | yes | no | 0.986 | 0.842 | 0.48 | 1e-106 | |
| P11960 | 441 | 2-oxoisovalerate dehydrog | yes | no | 0.986 | 0.850 | 0.48 | 1e-106 | |
| P50136 | 442 | 2-oxoisovalerate dehydrog | yes | no | 0.986 | 0.848 | 0.477 | 1e-106 | |
| P11178 | 455 | 2-oxoisovalerate dehydrog | yes | no | 0.986 | 0.824 | 0.48 | 1e-105 | |
| Q72GU1 | 367 | 2-oxoisovalerate dehydrog | yes | no | 0.857 | 0.888 | 0.415 | 2e-64 | |
| Q5SLR4 | 367 | 2-oxoisovalerate dehydrog | yes | no | 0.857 | 0.888 | 0.415 | 1e-63 |
| >sp|Q54M22|ODBA_DICDI 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Dictyostelium discoideum GN=bkdA PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 402 bits (1032), Expect = e-111, Method: Compositional matrix adjust.
Identities = 186/370 (50%), Positives = 255/370 (68%), Gaps = 7/370 (1%)
Query: 12 IPCYRVLDDDG---QPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYL 68
IPCY ++D +G +P D +F S+ IKMY M+TL MD+I Y+ QRQGRISFY+
Sbjct: 64 IPCYTIMDQEGVVSKPDQDPNF---SKEEVIKMYTTMLTLNVMDSILYDVQRQGRISFYM 120
Query: 69 TTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMP 128
T+ GEEAI+I SAAA++ D + QYRE GV +WRGF++ + NQC N+ D GKGRQMP
Sbjct: 121 TSFGEEAIHIGSAAALEMSDTIFAQYRETGVFMWRGFTINDIINQCCTNEHDLGKGRQMP 180
Query: 129 IHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNF 188
+H+GS K N T+SS + TQLP AVG++YA K+ + C + YFG+G SEGDFHAA+NF
Sbjct: 181 MHFGSRKINLQTISSPLTTQLPQAVGSSYAQKLAGEKNCTIVYFGEGAASEGDFHAAMNF 240
Query: 189 SAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKG-RAYGVRSIRVDGNDALAIYSAVH 247
+A P IF CRNN WAISTP +Q++ DG +G YG+++IRVDGND A+Y+
Sbjct: 241 AAALSTPTIFFCRNNKWAISTPSKEQYKGDGIAGRGPNGYGMKTIRVDGNDIWAVYNVTK 300
Query: 248 AAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESN 307
AR++A+ E P+LIEA+TYRVGHH+TSDDS++YR V+EI W+ ++P++R R ++
Sbjct: 301 LARKIAVEEQVPVLIEAMTYRVGHHSTSDDSSRYRTVEEINAWKEGKNPISRLRNYMNHK 360
Query: 308 GWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETI 367
GWW+ E E ++ R + +L AEK KP I+++FTDVYD NL EQ+ L E +
Sbjct: 361 GWWSDAQEKETIANARTTVRESLVNAEKQYKPSINEIFTDVYDKPTPNLIEQQKELIEHL 420
Query: 368 KKHPQDYPSN 377
K +P +YP N
Sbjct: 421 KLYPDEYPLN 430
|
The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). Dictyostelium discoideum (taxid: 44689) EC: 1EC: .EC: 2EC: .EC: 4EC: .EC: 4 |
| >sp|O45924|ODBA_CAEEL 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Caenorhabditis elegans GN=Y39E4A.3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 395 bits (1015), Expect = e-109, Method: Compositional matrix adjust.
Identities = 186/365 (50%), Positives = 244/365 (66%), Gaps = 2/365 (0%)
Query: 12 IPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTS 71
+P YRV + G S E ++KMY M L MD I Y++QRQGRISFY+T+
Sbjct: 59 LPIYRVTNAVGDVIDKSQDPNFDEQTSLKMYKTMTQLNIMDRILYDSQRQGRISFYMTSF 118
Query: 72 GEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHY 131
GEE ++ SAAA++ D + QYRE GVLLWRG++M+ F NQC+GN D GKGRQMP+H+
Sbjct: 119 GEEGNHVGSAAALEPQDLIYGQYREAGVLLWRGYTMENFMNQCYGNADDLGKGRQMPMHF 178
Query: 132 GSNKHNYFTVSSTIATQLPHAVGAAYALKMDR-KDACAVTYFGDGGTSEGDFHAALNFSA 190
G+ + N+ T+SS + TQLP AVG+AYA K + + AV YFGDG SEGD HAA NF+A
Sbjct: 179 GTKERNFVTISSPLTTQLPQAVGSAYAFKQQKDNNRIAVVYFGDGAASEGDAHAAFNFAA 238
Query: 191 VTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAR 250
+ P+IF CRNNG+AISTP S+Q+ DG KG AYG+ +IRVDGND LA+Y+A AR
Sbjct: 239 TLKCPIIFFCRNNGYAISTPTSEQYGGDGIAGKGPAYGLHTIRVDGNDLLAVYNATKEAR 298
Query: 251 EMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWW 310
+A+ RP+LIEA+TYR+GHH+TSDDST YR DE++ W P+TRF+K+I GWW
Sbjct: 299 RVAL-TNRPVLIEAMTYRLGHHSTSDDSTAYRSSDEVQTWGDKDHPITRFKKYITERGWW 357
Query: 311 NGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKH 370
N + E E + V+K++L AEK +K DLF DVYD P LR Q L + ++
Sbjct: 358 NEEKEMEWQKEVKKRVLTEFAAAEKRKKAHYHDLFEDVYDELPLRLRRQRDELDAHVAEY 417
Query: 371 PQDYP 375
+ YP
Sbjct: 418 KEHYP 422
|
The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3) (By similarity). Required for the production of the monomethyl branched-chain fatty acids (mmBCFAs) isopentadecanoate (C15iso) and isoheptadecanoate (C17iso). Caenorhabditis elegans (taxid: 6239) EC: 1 EC: . EC: 2 EC: . EC: 4 EC: . EC: 4 |
| >sp|A5A6H9|ODBA_PANTR 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Pan troglodytes GN=BCKDHA PE=2 SV=1 | Back alignment and function description |
|---|
Score = 389 bits (998), Expect = e-107, Method: Compositional matrix adjust.
Identities = 182/375 (48%), Positives = 248/375 (66%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K+Y M L TMD I YE+QR
Sbjct: 65 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 124
Query: 61 QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE ++ SAAA+ N D V QYRE GVL++R + ++ F QC+GN +D
Sbjct: 125 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISD 184
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 185 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 244
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
D HA NF+A E P+IF CRNNG+AISTP S+Q+R DG +G YG+ SIRVDGND
Sbjct: 245 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVF 304
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
A+Y+A AR A+ E +P LIEA+TYR+GHH+TSDDS+ YR VDE+ +W PV+R
Sbjct: 305 AVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPVSRL 364
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
R ++ S GWW+ + E R RK+++ A ++AE+ KP + LF+DVY P+ LR+Q+
Sbjct: 365 RHYLLSQGWWDEEQEKAWRKQSRKKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQ 424
Query: 361 HSLRETIKKHPQDYP 375
SL ++ + + YP
Sbjct: 425 ESLARHLQTYGEHYP 439
|
The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). Pan troglodytes (taxid: 9598) EC: 1 EC: . EC: 2 EC: . EC: 4 EC: . EC: 4 |
| >sp|Q8HXY4|ODBA_MACFA 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Macaca fascicularis GN=BCKDHA PE=2 SV=1 | Back alignment and function description |
|---|
Score = 387 bits (994), Expect = e-107, Method: Compositional matrix adjust.
Identities = 181/375 (48%), Positives = 248/375 (66%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K+Y M L TMD I YE+QR
Sbjct: 65 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 124
Query: 61 QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE ++ SAAA+ N D V QYRE GVL++R + ++ F QC+GN +D
Sbjct: 125 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISD 184
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 185 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 244
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
D HA NF+A E P+IF CRNNG+AISTP S+Q+R DG +G YG+ SIRVDGND
Sbjct: 245 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVF 304
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
A+Y+A AR A+ E +P LIEA+TYR+GHH+TSDDS+ YR VDE+ +W P++R
Sbjct: 305 AVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPISRL 364
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
R ++ S GWW+ + E R RK+++ A ++AE+ KP + LF+DVY P+ LR+Q+
Sbjct: 365 RHYLLSQGWWDEEQEKAWRKQSRKKVMKAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQ 424
Query: 361 HSLRETIKKHPQDYP 375
SL ++ + + YP
Sbjct: 425 ESLARHLQTYGEHYP 439
|
The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). Macaca fascicularis (taxid: 9541) EC: 1 EC: . EC: 2 EC: . EC: 4 EC: . EC: 4 |
| >sp|P12694|ODBA_HUMAN 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Homo sapiens GN=BCKDHA PE=1 SV=2 | Back alignment and function description |
|---|
Score = 387 bits (993), Expect = e-106, Method: Compositional matrix adjust.
Identities = 180/375 (48%), Positives = 248/375 (66%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K+Y M L TMD I YE+QR
Sbjct: 65 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 124
Query: 61 QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE ++ SAAA+ N D V QYRE GVL++R + ++ F QC+GN +D
Sbjct: 125 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISD 184
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 185 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 244
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
D HA NF+A E P+IF CRNNG+AISTP S+Q+R DG +G YG+ SIRVDGND
Sbjct: 245 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVF 304
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
A+Y+A AR A+ E +P LIEA+TYR+GHH+TSDDS+ YR VDE+ +W P++R
Sbjct: 305 AVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPISRL 364
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
R ++ S GWW+ + E R R++++ A ++AE+ KP + LF+DVY P+ LR+Q+
Sbjct: 365 RHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQ 424
Query: 361 HSLRETIKKHPQDYP 375
SL ++ + + YP
Sbjct: 425 ESLARHLQTYGEHYP 439
|
The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 2 EC: . EC: 4 EC: . EC: 4 |
| >sp|P11960|ODBA_RAT 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial (Fragment) OS=Rattus norvegicus GN=Bckdha PE=1 SV=1 | Back alignment and function description |
|---|
Score = 385 bits (989), Expect = e-106, Method: Compositional matrix adjust.
Identities = 180/375 (48%), Positives = 248/375 (66%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K+Y M L TMD I YE+QR
Sbjct: 61 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPQEEVLKLYRSMTLLNTMDRILYESQR 120
Query: 61 QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE ++ SAAA++ D V QYRE GVL++R + ++ F QC+GN +D
Sbjct: 121 QGRISFYMTNYGEEGTHVGSAAALERTDLVFGQYREAGVLMYRDYPLELFMAQCYGNVSD 180
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 181 PGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANQIVICYFGEGAASEG 240
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
D HA NF+A E P+IF CRNNG+AISTP S+Q+R DG +G YG+ SIRVDGND
Sbjct: 241 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVF 300
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
A+Y+A AR A+ E +P LIEA+TYR+GHH+TSDDS+ YR VDE+ +W P++R
Sbjct: 301 AVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPISRL 360
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
R+++ + GWW+ + E R RK+++ A ++AE+ KP S LF+DVY P+ LR Q+
Sbjct: 361 RQYLLNQGWWDEEQEKAWRKQSRKKVMEAFEQAERKLKPNPSLLFSDVYQEMPAQLRRQQ 420
Query: 361 HSLRETIKKHPQDYP 375
SL ++ + + YP
Sbjct: 421 ESLARHLQTYGEHYP 435
|
The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 2 EC: . EC: 4 EC: . EC: 4 |
| >sp|P50136|ODBA_MOUSE 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Mus musculus GN=Bckdha PE=1 SV=1 | Back alignment and function description |
|---|
Score = 384 bits (985), Expect = e-106, Method: Compositional matrix adjust.
Identities = 179/375 (47%), Positives = 248/375 (66%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K Y M L TMD I YE+QR
Sbjct: 62 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPQEEVLKFYRSMTLLNTMDRILYESQR 121
Query: 61 QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
+GRISFY+T GEE ++ SAAA++ D V QYRE GVL++R + ++ F +QC+GN D
Sbjct: 122 EGRISFYMTNYGEEGTHVGSAAALERTDLVFGQYREAGVLMYRDYPLELFMSQCYGNVND 181
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 182 PGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRIVICYFGEGAASEG 241
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
D HA NF+A E P+IF CRNNG+AISTP S+Q+R DG +G YG++SIRVDGND
Sbjct: 242 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIKSIRVDGNDVF 301
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
A+Y+A AR A+ E +P LIEA+TYR+GHH+TSDDS+ YR VDE+ +W P++R
Sbjct: 302 AVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPISRL 361
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
R+++ + GWW+ + E R RK+++ A ++AE+ KP S LF+DVY P+ LR Q+
Sbjct: 362 RQYLLNQGWWDEEQEKAWRKQSRKKVMEAFEQAERKLKPNPSLLFSDVYQEMPAQLRRQQ 421
Query: 361 HSLRETIKKHPQDYP 375
SL ++ + + YP
Sbjct: 422 ESLARHLQTYGEHYP 436
|
The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). Mus musculus (taxid: 10090) EC: 1 EC: . EC: 2 EC: . EC: 4 EC: . EC: 4 |
| >sp|P11178|ODBA_BOVIN 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Bos taurus GN=BCKDHA PE=2 SV=1 | Back alignment and function description |
|---|
Score = 383 bits (984), Expect = e-105, Method: Compositional matrix adjust.
Identities = 180/375 (48%), Positives = 247/375 (65%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K Y M L TMD I YE+QR
Sbjct: 75 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPQEKVLKFYKSMTLLNTMDRILYESQR 134
Query: 61 QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE ++ SAAA+ + D V QYRE GVL++R + ++ F QC+GN +D
Sbjct: 135 QGRISFYMTNYGEEGTHVGSAAALDDTDLVFGQYREAGVLMYRDYPLELFMAQCYGNVSD 194
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 195 LGKGRQMPVHYGCRERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 254
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
D HA NF+A E P+IF CRNNG+AISTP S+Q+R DG +G YG+ SIRVDGND
Sbjct: 255 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGILSIRVDGNDVF 314
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
A+Y+A AR A+ E +P LIEA+TYR+GHH+TSDDS+ YR VDE+ +W P++R
Sbjct: 315 AVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPISRL 374
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
R ++S GWW+ + E R RK+++ A ++AE+ KP S +F+DVY P+ LR+Q+
Sbjct: 375 RHHLQSRGWWDDEQEKAWRKQSRKKVMEAFEQAERKLKPNPSLIFSDVYQEMPAQLRKQQ 434
Query: 361 HSLRETIKKHPQDYP 375
SL ++ + + YP
Sbjct: 435 ESLARHLQTYGEHYP 449
|
The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). Bos taurus (taxid: 9913) EC: 1 EC: . EC: 2 EC: . EC: 4 EC: . EC: 4 |
| >sp|Q72GU1|ODBA_THET2 2-oxoisovalerate dehydrogenase subunit alpha OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=TT_C1757 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 246 bits (629), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 137/330 (41%), Positives = 196/330 (59%), Gaps = 4/330 (1%)
Query: 40 KMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKND-DFVVPQYREPG 98
++Y DM+ + +D + R G+ SF +G EA +A A AI+ D+V P YR+ G
Sbjct: 40 RLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHEAAQVAIAHAIRPGFDWVFPYYRDHG 99
Query: 99 VLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYA 158
+ L G ++E Q KAD KGRQMP H GS N+FTV+S IA+ +P A GAA +
Sbjct: 100 LALALGIPLKELFGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVPPAAGAAIS 159
Query: 159 LKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSD 218
+K+ R AV FGDG TSEGD++A +NF+AV AP +F+C NN +AIS Q S
Sbjct: 160 MKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFVCENNFYAISVDYRHQTHSP 219
Query: 219 GAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMA-IGEGRPILIEALTYRVGHHTTSDD 277
K A+G+ VDG D LA Y V A E A GEG P L+E YR G H+++DD
Sbjct: 220 TIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEG-PSLVELRVYRYGPHSSADD 278
Query: 278 STKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAE 337
++YRP +E+ +WR +DP+ RFR+++E+ G WN + E ++R +R ++ L+EAE+A
Sbjct: 279 DSRYRPKEEVAFWR-KKDPIPRFRRFLEARGLWNEEWEEDVREEIRAELERGLKEAEEAG 337
Query: 338 KPPISDLFTDVYDVSPSNLREQEHSLRETI 367
P +F DV+ P +L QE L+E +
Sbjct: 338 PVPPEWMFADVFAEKPWHLLRQEALLKEEL 367
|
The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (taxid: 262724) EC: 1 EC: . EC: 2 EC: . EC: 4 EC: . EC: 4 |
| >sp|Q5SLR4|ODBA_THET8 2-oxoisovalerate dehydrogenase subunit alpha OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=TTHA0229 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 243 bits (621), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 137/330 (41%), Positives = 195/330 (59%), Gaps = 4/330 (1%)
Query: 40 KMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKND-DFVVPQYREPG 98
++Y DM+ + +D + R G+ SF +G EA +A A AI+ D+V P YR+ G
Sbjct: 40 RLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHEAAQVAIAHAIRPGFDWVFPYYRDHG 99
Query: 99 VLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYA 158
+ L G ++E Q KAD KGRQMP H GS N+FTV+S IA+ +P A GAA +
Sbjct: 100 LALALGIPLKELLGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVPPAAGAAIS 159
Query: 159 LKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSD 218
+K+ R AV FGDG TSEGD++A +NF+AV AP +FI NN +AIS Q S
Sbjct: 160 MKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNFYAISVDYRHQTHSP 219
Query: 219 GAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMA-IGEGRPILIEALTYRVGHHTTSDD 277
K A+G+ VDG D LA Y V A E A GEG P L+E YR G H+++DD
Sbjct: 220 TIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEG-PSLVELRVYRYGPHSSADD 278
Query: 278 STKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAE 337
++YRP +E+ +WR +DP+ RFR+++E+ G WN + E ++R +R ++ L+EAE+A
Sbjct: 279 DSRYRPKEEVAFWR-KKDPIPRFRRFLEARGLWNEEWEEDVREEIRAELERGLKEAEEAG 337
Query: 338 KPPISDLFTDVYDVSPSNLREQEHSLRETI 367
P +F DV+ P +L QE L+E +
Sbjct: 338 PVPPEWMFEDVFAEKPWHLLRQEALLKEEL 367
|
The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (taxid: 300852) EC: 1 EC: . EC: 2 EC: . EC: 4 EC: . EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 380 | ||||||
| 449461865 | 481 | PREDICTED: 2-oxoisovalerate dehydrogenas | 1.0 | 0.790 | 0.765 | 0.0 | |
| 449507480 | 481 | PREDICTED: 2-oxoisovalerate dehydrogenas | 1.0 | 0.790 | 0.763 | 0.0 | |
| 356508967 | 474 | PREDICTED: 2-oxoisovalerate dehydrogenas | 1.0 | 0.801 | 0.773 | 0.0 | |
| 357464693 | 449 | 2-oxoisovalerate dehydrogenase subunit a | 1.0 | 0.846 | 0.763 | 1e-180 | |
| 224083452 | 378 | predicted protein [Populus trichocarpa] | 0.994 | 1.0 | 0.789 | 1e-180 | |
| 297811017 | 472 | hypothetical protein ARALYDRAFT_350155 [ | 1.0 | 0.805 | 0.765 | 1e-179 | |
| 255558474 | 380 | 2-oxoisovalerate dehydrogenase, putative | 0.997 | 0.997 | 0.757 | 1e-179 | |
| 218186540 | 479 | hypothetical protein OsI_37710 [Oryza sa | 1.0 | 0.793 | 0.768 | 1e-179 | |
| 222616745 | 512 | hypothetical protein OsJ_35450 [Oryza sa | 1.0 | 0.742 | 0.765 | 1e-179 | |
| 108862263 | 487 | 2-oxoisovalerate dehydrogenase alpha sub | 1.0 | 0.780 | 0.765 | 1e-179 |
| >gi|449461865|ref|XP_004148662.1| PREDICTED: 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 639 bits (1649), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 291/380 (76%), Positives = 340/380 (89%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + EERIPC+RVLDD+G+P S+F +VS+ VA+K+Y+DMVTLQTMDTIFYEAQR
Sbjct: 102 LSFIPDREEERIPCFRVLDDNGRPCMYSNFTQVSKEVAMKIYHDMVTLQTMDTIFYEAQR 161
Query: 61 QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T+ GEEAIN+ASAAA+ DD +VPQYRE GVL+WRGF+++EFA+QCFGNK D
Sbjct: 162 QGRISFYVTSLGEEAINVASAAALSLDDLIVPQYREAGVLIWRGFTLKEFASQCFGNKYD 221
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
Y KGRQMP+HYGS +HNYFTV+STIA+Q+PHAVGAAY++KMD+KDACAVTYFGDGGTSEG
Sbjct: 222 YCKGRQMPVHYGSKRHNYFTVASTIASQIPHAVGAAYSMKMDKKDACAVTYFGDGGTSEG 281
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
DFHAALNF+AV EAPVIFICRNNGWAISTPISDQFRSDG VVKG+AYGVRSIRVDGNDAL
Sbjct: 282 DFHAALNFAAVLEAPVIFICRNNGWAISTPISDQFRSDGVVVKGQAYGVRSIRVDGNDAL 341
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
A+Y+AV AAREMAI E RPILIEALTYR GHHTTSDDST+YRP E+EWWR DPV+RF
Sbjct: 342 AVYNAVRAAREMAIQEQRPILIEALTYRAGHHTTSDDSTRYRPAQEMEWWRVAMDPVSRF 401
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
RKWIESNGWW+ + E+ELRS +RKQ+L +Q AE++EKPP++D FTDVYDV PSNL+EQE
Sbjct: 402 RKWIESNGWWSNEAEAELRSRLRKQLLEEIQLAERSEKPPVADAFTDVYDVPPSNLQEQE 461
Query: 361 HSLRETIKKHPQDYPSNVPI 380
LR+TIK HPQDYPSN P+
Sbjct: 462 KWLRKTIKTHPQDYPSNFPL 481
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449507480|ref|XP_004163044.1| PREDICTED: 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 639 bits (1648), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 290/380 (76%), Positives = 341/380 (89%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + EERIPC+RVLDD+G+P ++F +VS+ VA+K+Y+DMVTLQTMDTIFYEAQR
Sbjct: 102 LSFIPDREEERIPCFRVLDDNGRPCMYNNFTQVSKEVAMKIYHDMVTLQTMDTIFYEAQR 161
Query: 61 QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T+ GEEAIN+ASAAA+ DD +VPQYRE GVL+WRGF+++EFA+QCFGNK D
Sbjct: 162 QGRISFYVTSLGEEAINVASAAALSLDDLIVPQYREAGVLIWRGFTLKEFASQCFGNKYD 221
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
Y KGRQMP+HYGS +HNYFTV+STIA+Q+PHAVGAAY++KMD+KDACAVTYFGDGGTSEG
Sbjct: 222 YCKGRQMPVHYGSKRHNYFTVASTIASQIPHAVGAAYSMKMDKKDACAVTYFGDGGTSEG 281
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
DFHAALNF+AV EAPVIFICRNNGWAISTPISDQFRSDG VVKG+AYGVRSIRVDGNDAL
Sbjct: 282 DFHAALNFAAVLEAPVIFICRNNGWAISTPISDQFRSDGVVVKGQAYGVRSIRVDGNDAL 341
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
A+Y+AV AAREMAI E RPILIEALTYR GHHTTSDDST+YRP +E+EWWR DPV+RF
Sbjct: 342 AVYNAVRAAREMAIQEQRPILIEALTYRAGHHTTSDDSTRYRPAEEMEWWRVAMDPVSRF 401
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
RKWIESNGWW+ + E+ELRS +RKQ+L +Q AE++EKPP++D FTDVYDV PSNL+EQE
Sbjct: 402 RKWIESNGWWSNEAEAELRSRLRKQLLEEIQLAERSEKPPVADAFTDVYDVPPSNLQEQE 461
Query: 361 HSLRETIKKHPQDYPSNVPI 380
LR+TIK HPQDYPSN P+
Sbjct: 462 KWLRKTIKTHPQDYPSNFPL 481
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356508967|ref|XP_003523224.1| PREDICTED: 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 639 bits (1647), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 294/380 (77%), Positives = 336/380 (88%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
MRFISES +ERIPCYRVLDD+GQP +FV+VS+ VA+KMY DMVTL++MDTIFYEAQR
Sbjct: 95 MRFISESPKERIPCYRVLDDNGQPILGHNFVQVSKEVAVKMYTDMVTLRSMDTIFYEAQR 154
Query: 61 QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEEAIN+ASAAA+ DD V PQYRE GVLLWRGF++QEFANQ F N D
Sbjct: 155 QGRISFYVTAIGEEAINVASAAALAMDDVVFPQYREAGVLLWRGFTLQEFANQLFSNIYD 214
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
YGKGRQMP HYGS KHNYFTV+STIATQ+ HAVGAAY+LKMD+KDACAVTYFGDGG+SEG
Sbjct: 215 YGKGRQMPAHYGSKKHNYFTVASTIATQISHAVGAAYSLKMDKKDACAVTYFGDGGSSEG 274
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
DFHAALNF+AV EAPVIFICRNNGWAISTPISDQFRSDG VVKG+AYGVRSIRVDGNDAL
Sbjct: 275 DFHAALNFAAVLEAPVIFICRNNGWAISTPISDQFRSDGVVVKGQAYGVRSIRVDGNDAL 334
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
AIYSA+ AAR+MAI E RPILIEALTYRVGHHTTSDDSTKYRP +EIEWWR +DPV RF
Sbjct: 335 AIYSAIQAARQMAITEERPILIEALTYRVGHHTTSDDSTKYRPANEIEWWRVARDPVVRF 394
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
RKWIE +GWWN ESEL +++R+Q+LH +QEAE EKPP++D F+DVYDV+PSNLREQE
Sbjct: 395 RKWIEKHGWWNDMAESELINNLRQQLLHTIQEAEGVEKPPLADSFSDVYDVAPSNLREQE 454
Query: 361 HSLRETIKKHPQDYPSNVPI 380
L+E ++K PQ+YP+N+ +
Sbjct: 455 QWLKEIVRKQPQEYPTNISV 474
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357464693|ref|XP_003602628.1| 2-oxoisovalerate dehydrogenase subunit alpha [Medicago truncatula] gi|355491676|gb|AES72879.1| 2-oxoisovalerate dehydrogenase subunit alpha [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 638 bits (1646), Expect = e-180, Method: Compositional matrix adjust.
Identities = 290/380 (76%), Positives = 333/380 (87%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
M F+SES + R+PCYRVLDD+G+P + FV+VSE A+KMYN+MV LQTMDTIFYEAQR
Sbjct: 70 MTFLSESQQHRVPCYRVLDDNGEPIFGTDFVQVSEDFAVKMYNNMVALQTMDTIFYEAQR 129
Query: 61 QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+TT+GEEAINIASAAA+ +D + PQYRE GVLLWRGF++QEFANQCF NK D
Sbjct: 130 QGRISFYVTTNGEEAINIASAAALSMNDVIFPQYREQGVLLWRGFTLQEFANQCFSNKFD 189
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP HYGSNKHNY V+ST+ATQ+PHAVGAAY+LKMD+KDACAVTYFGDGG+SEG
Sbjct: 190 NGKGRQMPAHYGSNKHNYMNVASTVATQIPHAVGAAYSLKMDKKDACAVTYFGDGGSSEG 249
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
DFHA LNF+AV EAPVIFICRNNGWAISTP SDQFRSDG VVKG+AYGVRSIRVDGNDAL
Sbjct: 250 DFHAGLNFAAVMEAPVIFICRNNGWAISTPTSDQFRSDGIVVKGQAYGVRSIRVDGNDAL 309
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
AIYSAV AAR+MA+ E RPILIEALTYRVGHH+TSDDSTKYRP +EIEWWR ++DPV RF
Sbjct: 310 AIYSAVQAARQMAVSEERPILIEALTYRVGHHSTSDDSTKYRPANEIEWWRLSRDPVARF 369
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
RKWIE NGWWN ESELR+S+R+Q+L +Q AE EKPP++D+F+DVYDV PSNL EQE
Sbjct: 370 RKWIERNGWWNDMAESELRNSLRQQLLQTIQVAESVEKPPLADMFSDVYDVPPSNLHEQE 429
Query: 361 HSLRETIKKHPQDYPSNVPI 380
L+ET+KKHP YP+N+ I
Sbjct: 430 KRLKETVKKHPHVYPTNISI 449
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224083452|ref|XP_002307033.1| predicted protein [Populus trichocarpa] gi|222856482|gb|EEE94029.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 637 bits (1643), Expect = e-180, Method: Compositional matrix adjust.
Identities = 300/380 (78%), Positives = 335/380 (88%), Gaps = 2/380 (0%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
MRF+SES +ERIPCYRVLDDDGQ S + VS+ +A+KMY+DM TLQ MDTIFYEAQR
Sbjct: 1 MRFLSESPKERIPCYRVLDDDGQLIQGS--IDVSKEIAVKMYSDMATLQIMDTIFYEAQR 58
Query: 61 QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFYLTT GEEAINIASAAA+ DDFVVPQYREPGVLLWRGF++Q+FANQCF NK D
Sbjct: 59 QGRISFYLTTIGEEAINIASAAALTIDDFVVPQYREPGVLLWRGFTLQQFANQCFSNKDD 118
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
+GRQMPIHYGS K NYFTV+STIA+QLPHAVG AY+LKMD KDACAVTYFGDGG+SEG
Sbjct: 119 DCRGRQMPIHYGSKKLNYFTVASTIASQLPHAVGVAYSLKMDGKDACAVTYFGDGGSSEG 178
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
DFHAALNF+AVTEAPV+FICRNNGWAISTP SDQFRSDG VV+G AYGVRSIRVDGND L
Sbjct: 179 DFHAALNFAAVTEAPVLFICRNNGWAISTPTSDQFRSDGIVVRGEAYGVRSIRVDGNDTL 238
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
A+YS V AAREMAI E RPIL+EALTYRVGHH+TSDDSTKYRPVDEIE WR+ +DP+ RF
Sbjct: 239 ALYSTVRAAREMAIREQRPILVEALTYRVGHHSTSDDSTKYRPVDEIELWRSARDPIARF 298
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
RKWIESNGWW+G+ ESELRS+VRKQ+L A+Q AE+ EKPP+ D+FTDVYDV PSNL EQE
Sbjct: 299 RKWIESNGWWSGEAESELRSNVRKQLLDAIQVAERTEKPPLVDIFTDVYDVPPSNLSEQE 358
Query: 361 HSLRETIKKHPQDYPSNVPI 380
LRETIK HPQDYPS+ +
Sbjct: 359 KWLRETIKIHPQDYPSDFTL 378
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297811017|ref|XP_002873392.1| hypothetical protein ARALYDRAFT_350155 [Arabidopsis lyrata subsp. lyrata] gi|297319229|gb|EFH49651.1| hypothetical protein ARALYDRAFT_350155 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 635 bits (1637), Expect = e-179, Method: Compositional matrix adjust.
Identities = 291/380 (76%), Positives = 335/380 (88%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+RFISES ER+PCYRVLDD+GQ +S FV+VSE VA+K+Y+DMVTLQ MD IFYEAQR
Sbjct: 93 IRFISESDSERVPCYRVLDDNGQLITNSQFVQVSEEVAVKIYSDMVTLQIMDNIFYEAQR 152
Query: 61 QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGR+SFY T GEEAINIASAAA+ D + PQYREPGVLLWRGF++QEFANQCFGNK+D
Sbjct: 153 QGRLSFYATAIGEEAINIASAAALTPQDVIFPQYREPGVLLWRGFTLQEFANQCFGNKSD 212
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
YGKGRQMP+HYGSNK NYFTVS+TIATQLP+AVGAAY+LKMDRKDACAVTYFGDGGTSEG
Sbjct: 213 YGKGRQMPVHYGSNKLNYFTVSATIATQLPNAVGAAYSLKMDRKDACAVTYFGDGGTSEG 272
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
DFHAALNF+AV EAPVIFICRNNGWAISTP SDQFRSDG VVKGRAYG+RSIRVDGNDAL
Sbjct: 273 DFHAALNFAAVMEAPVIFICRNNGWAISTPTSDQFRSDGVVVKGRAYGIRSIRVDGNDAL 332
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
A+YSAVH AR MAI E RPILIEALTYRVGHH+TSDDST+YR DEIEWW ++P++RF
Sbjct: 333 AMYSAVHTARGMAISEQRPILIEALTYRVGHHSTSDDSTRYRSADEIEWWNKARNPLSRF 392
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
R WIESNGWW+ + ES+LRS ++K++L AL+ AEK EKP + ++F+DVYDV PSNL EQE
Sbjct: 393 RTWIESNGWWSDEAESDLRSRIKKEMLEALRVAEKTEKPNLKNMFSDVYDVPPSNLMEQE 452
Query: 361 HSLRETIKKHPQDYPSNVPI 380
+R+TI HPQDYP++VP+
Sbjct: 453 LLVRQTIDSHPQDYPTDVPL 472
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255558474|ref|XP_002520262.1| 2-oxoisovalerate dehydrogenase, putative [Ricinus communis] gi|223540481|gb|EEF42048.1| 2-oxoisovalerate dehydrogenase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 634 bits (1636), Expect = e-179, Method: Compositional matrix adjust.
Identities = 287/379 (75%), Positives = 335/379 (88%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
M+FIS SS++R+PCYR+LD++G +S F +VS+ +A+KMYN+MVTLQ MDTIFYEAQR
Sbjct: 1 MKFISGSSQKRVPCYRILDENGDLIENSDFDEVSKEIAVKMYNEMVTLQMMDTIFYEAQR 60
Query: 61 QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T+ GEE+INIASAAA+ DD V+PQYREPGVLLWRGF++QEFANQCFGNKAD
Sbjct: 61 QGRISFYVTSIGEESINIASAAALTKDDVVLPQYREPGVLLWRGFTLQEFANQCFGNKAD 120
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
YG+GRQMPIHYGSNKHNYFTVSS IATQLP AVG AY+LKM++KDAC VTY GDGGTSEG
Sbjct: 121 YGRGRQMPIHYGSNKHNYFTVSSPIATQLPQAVGVAYSLKMEKKDACVVTYIGDGGTSEG 180
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
DFHAALNF+AVTEAPVIFICRNNGWAIST IS+QFRSDG VVKG+AYG++SIRVDGNDAL
Sbjct: 181 DFHAALNFAAVTEAPVIFICRNNGWAISTHISEQFRSDGIVVKGKAYGIQSIRVDGNDAL 240
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
A+Y + AAR++A+ E RP+L+EALTYRVGHH+TSDDSTKYRP DEIE+W+ ++PV RF
Sbjct: 241 AVYRTIRAARQIAVSEQRPVLVEALTYRVGHHSTSDDSTKYRPADEIEYWKMARNPVNRF 300
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
RKW+E NGWW+ ESELRSSVRKQ+L A+Q AEK EKPP+ D+FTDVYD+ SNLREQE
Sbjct: 301 RKWVERNGWWSDKEESELRSSVRKQLLQAIQVAEKTEKPPLGDMFTDVYDIPSSNLREQE 360
Query: 361 HSLRETIKKHPQDYPSNVP 379
LRETI HPQDYPS VP
Sbjct: 361 KQLRETISAHPQDYPSVVP 379
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|218186540|gb|EEC68967.1| hypothetical protein OsI_37710 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 634 bits (1635), Expect = e-179, Method: Compositional matrix adjust.
Identities = 292/380 (76%), Positives = 339/380 (89%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
M F+ ES ERI CYRVLDDDG+ S F +VS+ +A+KMY++MVTLQ MDTIF+EAQR
Sbjct: 100 MNFLPESQRERINCYRVLDDDGRTISGSRFQEVSKELALKMYSEMVTLQVMDTIFFEAQR 159
Query: 61 QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFYLT+ GEEAINIASAAA+ DD V+PQYREPGVLLWRGF++QEFANQCFGNK D
Sbjct: 160 QGRISFYLTSHGEEAINIASAAALTIDDIVLPQYREPGVLLWRGFTLQEFANQCFGNKLD 219
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
YGKGRQMPIHYGSN+ NYFTVSS IATQLPHAVGAAY+LKMD+KDACA+TYFGDGGTSEG
Sbjct: 220 YGKGRQMPIHYGSNRLNYFTVSSPIATQLPHAVGAAYSLKMDKKDACAITYFGDGGTSEG 279
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
DFHAALNF+AV EAPVIF CRNNGWAISTP S+QFRSDGAV++G+AYG+RSIRVDGNDAL
Sbjct: 280 DFHAALNFAAVMEAPVIFFCRNNGWAISTPTSEQFRSDGAVIRGQAYGMRSIRVDGNDAL 339
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
A+YSAVH AREMAI EGRPIL+EALTYRVGHH+TSDDSTKYRPVDEIE WRT +DP++R+
Sbjct: 340 AVYSAVHTAREMAIKEGRPILVEALTYRVGHHSTSDDSTKYRPVDEIEHWRTARDPISRY 399
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
RKW++ NGWW + ESELR++VR+++L A+Q AE+ KPP+++LFTDVYD PSNLREQE
Sbjct: 400 RKWVQGNGWWCDEDESELRNNVRQELLKAIQVAERMPKPPLAELFTDVYDEVPSNLREQE 459
Query: 361 HSLRETIKKHPQDYPSNVPI 380
LR+TIKKHP DYP++V I
Sbjct: 460 RLLRDTIKKHPADYPADVHI 479
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|222616745|gb|EEE52877.1| hypothetical protein OsJ_35450 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 633 bits (1633), Expect = e-179, Method: Compositional matrix adjust.
Identities = 291/380 (76%), Positives = 338/380 (88%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
M F+ ES +RI CYRVLDDDG+ S F +VS+ +A+KMYN+M TLQ MDTIF+EAQR
Sbjct: 133 MNFLPESQRDRINCYRVLDDDGRTISGSRFQEVSKELALKMYNEMATLQVMDTIFFEAQR 192
Query: 61 QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFYLT+ GEEAINIASAAA+ DD V+PQYREPGVLLWRGF++QEFANQCFGNK D
Sbjct: 193 QGRISFYLTSHGEEAINIASAAALTIDDIVLPQYREPGVLLWRGFTLQEFANQCFGNKLD 252
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
YGKGRQMPIHYGSN+ NYFTVSS IATQLPHAVGAAY+LKMD+KDACA+TYFGDGGTSEG
Sbjct: 253 YGKGRQMPIHYGSNRLNYFTVSSPIATQLPHAVGAAYSLKMDKKDACAITYFGDGGTSEG 312
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
DFHAALNF+AV EAPVIF CRNNGWAISTP S+QFRSDGAV++G+AYG+RSIRVDGNDAL
Sbjct: 313 DFHAALNFAAVMEAPVIFFCRNNGWAISTPTSEQFRSDGAVIRGQAYGMRSIRVDGNDAL 372
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
A+YSAVH AREMAI EGRPIL+EALTYRVGHH+TSDDSTKYRPVDEIE WRT +DP++R+
Sbjct: 373 AVYSAVHTAREMAIKEGRPILVEALTYRVGHHSTSDDSTKYRPVDEIEHWRTARDPISRY 432
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
RKW++ NGWW + ESELR++VR+++L A+Q AE+ KPP+++LFTDVYD PSNLREQE
Sbjct: 433 RKWVQGNGWWCDEDESELRNNVRQELLKAIQVAERMPKPPLAELFTDVYDEVPSNLREQE 492
Query: 361 HSLRETIKKHPQDYPSNVPI 380
LR+TIKKHP DYP++V I
Sbjct: 493 RLLRDTIKKHPADYPADVHI 512
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|108862263|gb|ABA95968.2| 2-oxoisovalerate dehydrogenase alpha subunit, mitochondrial precursor, putative, expressed [Oryza sativa Japonica Group] gi|108862264|gb|ABA95969.2| 2-oxoisovalerate dehydrogenase alpha subunit, mitochondrial precursor, putative, expressed [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 632 bits (1630), Expect = e-179, Method: Compositional matrix adjust.
Identities = 291/380 (76%), Positives = 338/380 (88%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
M F+ ES +RI CYRVLDDDG+ S F +VS+ +A+KMYN+M TLQ MDTIF+EAQR
Sbjct: 108 MNFLPESQRDRINCYRVLDDDGRTISGSRFQEVSKELALKMYNEMATLQVMDTIFFEAQR 167
Query: 61 QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFYLT+ GEEAINIASAAA+ DD V+PQYREPGVLLWRGF++QEFANQCFGNK D
Sbjct: 168 QGRISFYLTSHGEEAINIASAAALTIDDIVLPQYREPGVLLWRGFTLQEFANQCFGNKLD 227
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
YGKGRQMPIHYGSN+ NYFTVSS IATQLPHAVGAAY+LKMD+KDACA+TYFGDGGTSEG
Sbjct: 228 YGKGRQMPIHYGSNRLNYFTVSSPIATQLPHAVGAAYSLKMDKKDACAITYFGDGGTSEG 287
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
DFHAALNF+AV EAPVIF CRNNGWAISTP S+QFRSDGAV++G+AYG+RSIRVDGNDAL
Sbjct: 288 DFHAALNFAAVMEAPVIFFCRNNGWAISTPTSEQFRSDGAVIRGQAYGMRSIRVDGNDAL 347
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
A+YSAVH AREMAI EGRPIL+EALTYRVGHH+TSDDSTKYRPVDEIE WRT +DP++R+
Sbjct: 348 AVYSAVHTAREMAIKEGRPILVEALTYRVGHHSTSDDSTKYRPVDEIEHWRTARDPISRY 407
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
RKW++ NGWW + ESELR++VR+++L A+Q AE+ KPP+++LFTDVYD PSNLREQE
Sbjct: 408 RKWVQGNGWWCDEDESELRNNVRQELLKAIQVAERMPKPPLAELFTDVYDEVPSNLREQE 467
Query: 361 HSLRETIKKHPQDYPSNVPI 380
LR+TIKKHP DYP++V I
Sbjct: 468 RLLRDTIKKHPADYPADVHI 487
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 380 | ||||||
| TAIR|locus:2184702 | 472 | AT5G09300 "AT5G09300" [Arabido | 1.0 | 0.805 | 0.736 | 1.6e-157 | |
| TAIR|locus:2027072 | 472 | AT1G21400 "AT1G21400" [Arabido | 0.986 | 0.794 | 0.706 | 1.2e-150 | |
| WB|WBGene00012713 | 432 | Y39E4A.3 [Caenorhabditis elega | 0.984 | 0.865 | 0.484 | 3.5e-98 | |
| DICTYBASE|DDB_G0286335 | 441 | bkdA "branched-chain alpha-ket | 0.955 | 0.823 | 0.489 | 9.4e-98 | |
| UNIPROTKB|F1RHA0 | 411 | LOC100738911 "Uncharacterized | 0.986 | 0.912 | 0.472 | 1.2e-97 | |
| UNIPROTKB|I3LNR4 | 447 | LOC100738911 "Uncharacterized | 0.986 | 0.838 | 0.472 | 1.2e-97 | |
| UNIPROTKB|E2RPW4 | 530 | B3GNT8 "Uncharacterized protei | 0.986 | 0.707 | 0.469 | 1.5e-97 | |
| UNIPROTKB|F1PI86 | 480 | B3GNT8 "Uncharacterized protei | 0.986 | 0.781 | 0.469 | 1.5e-97 | |
| UNIPROTKB|F5H5P2 | 479 | BCKDHA "Uncharacterized protei | 0.986 | 0.782 | 0.469 | 2.5e-97 | |
| UNIPROTKB|P12694 | 445 | BCKDHA "2-oxoisovalerate dehyd | 0.986 | 0.842 | 0.469 | 2.5e-97 |
| TAIR|locus:2184702 AT5G09300 "AT5G09300" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1535 (545.4 bits), Expect = 1.6e-157, P = 1.6e-157
Identities = 280/380 (73%), Positives = 325/380 (85%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
++FISES +ER+PCYRVLDD+GQ +S FV+VSE VA+K+Y+DMVTLQ MD IFYEAQR
Sbjct: 93 IQFISESDKERVPCYRVLDDNGQLITNSQFVQVSEEVAVKIYSDMVTLQIMDNIFYEAQR 152
Query: 61 QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGR+SFY T GEE D + PQYREPGVLLWRGF++QEFANQCFGNK+D
Sbjct: 153 QGRLSFYATAIGEEAINIASAAALTPQDVIFPQYREPGVLLWRGFTLQEFANQCFGNKSD 212
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
YGKGRQMP+HYGSNK NYFTVS+TIATQLP+AVGAAY+LKMD+KDACAVTYFGDGGTSEG
Sbjct: 213 YGKGRQMPVHYGSNKLNYFTVSATIATQLPNAVGAAYSLKMDKKDACAVTYFGDGGTSEG 272
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
DFHAALN +AV EAPV+FICRNNGWAISTP SDQFRSDG VVKGRAYG+RSIRVDGNDAL
Sbjct: 273 DFHAALNIAAVMEAPVLFICRNNGWAISTPTSDQFRSDGVVVKGRAYGIRSIRVDGNDAL 332
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
A+YSAVH AREMAI E RPILIEALTYRVGHH+TSDDST+YR EIEWW ++P++RF
Sbjct: 333 AMYSAVHTAREMAIREQRPILIEALTYRVGHHSTSDDSTRYRSAGEIEWWNKARNPLSRF 392
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
R WIESNGWW+ ES+LRS ++K++L AL+ AEK EKP + ++F+DVYDV PSNLREQE
Sbjct: 393 RTWIESNGWWSDKTESDLRSRIKKEMLEALRVAEKTEKPNLQNMFSDVYDVPPSNLREQE 452
Query: 361 HSLRETIKKHPQDYPSNVPI 380
+R+TI HPQDYPS+VP+
Sbjct: 453 LLVRQTINSHPQDYPSDVPL 472
|
|
| TAIR|locus:2027072 AT1G21400 "AT1G21400" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1470 (522.5 bits), Expect = 1.2e-150, P = 1.2e-150
Identities = 265/375 (70%), Positives = 312/375 (83%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
M+FI ESS RIPCYRVLD+DG+ PDS F+ VSE +A++MY M TLQ MD IFYEAQR
Sbjct: 93 MKFIPESSSRRIPCYRVLDEDGRIIPDSDFIPVSEKLAVRMYEQMATLQVMDHIFYEAQR 152
Query: 61 QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFYLT+ GEE DD V+PQYREPGVLLWRGF+++EFANQCFGNKAD
Sbjct: 153 QGRISFYLTSVGEEAINIASAAALSPDDVVLPQYREPGVLLWRGFTLEEFANQCFGNKAD 212
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
YGKGRQMPIHYGSN+ NYFT+SS IATQLP A G Y+LKMD+K+AC VT+ GDGGTSEG
Sbjct: 213 YGKGRQMPIHYGSNRLNYFTISSPIATQLPQAAGVGYSLKMDKKNACTVTFIGDGGTSEG 272
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
DFHA LNF+AV EAPV+FICRNNGWAIST IS+QFRSDG VVKG+AYG+RSIRVDGNDAL
Sbjct: 273 DFHAGLNFAAVMEAPVVFICRNNGWAISTHISEQFRSDGIVVKGQAYGIRSIRVDGNDAL 332
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
A+YSAV +AREMA+ E RP+LIE +TYRVGHH+TSDDSTKYR DEI++W+ +++PV RF
Sbjct: 333 AVYSAVRSAREMAVTEQRPVLIEMMTYRVGHHSTSDDSTKYRAADEIQYWKMSRNPVNRF 392
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
RKW+E NGWW+ + ES+LRS+ RKQ+L A+Q AEK EK P+++LF DVYDV P NL EQE
Sbjct: 393 RKWVEDNGWWSEEDESKLRSNARKQLLQAIQAAEKWEKQPLTELFNDVYDVKPKNLEEQE 452
Query: 361 HSLRETIKKHPQDYP 375
L+E +KK PQDYP
Sbjct: 453 LGLKELVKKQPQDYP 467
|
|
| WB|WBGene00012713 Y39E4A.3 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 975 (348.3 bits), Expect = 3.5e-98, P = 3.5e-98
Identities = 182/376 (48%), Positives = 240/376 (63%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ ++ +P YRV + G S E ++KMY M L MD I Y++QR
Sbjct: 49 LEIVNADDTPALPIYRVTNAVGDVIDKSQDPNFDEQTSLKMYKTMTQLNIMDRILYDSQR 108
Query: 61 QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T+ GEE + D + QYRE GVLLWRG++M+ F NQC+GN D
Sbjct: 109 QGRISFYMTSFGEEGNHVGSAAALEPQDLIYGQYREAGVLLWRGYTMENFMNQCYGNADD 168
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDR-KDACAVTYFGDGGTSE 179
GKGRQMP+H+G+ + N+ T+SS + TQLP AVG+AYA K + + AV YFGDG SE
Sbjct: 169 LGKGRQMPMHFGTKERNFVTISSPLTTQLPQAVGSAYAFKQQKDNNRIAVVYFGDGAASE 228
Query: 180 GDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDA 239
GD HAA NF+A + P+IF CRNNG+AISTP S+Q+ DG KG AYG+ +IRVDGND
Sbjct: 229 GDAHAAFNFAATLKCPIIFFCRNNGYAISTPTSEQYGGDGIAGKGPAYGLHTIRVDGNDL 288
Query: 240 LAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTR 299
LA+Y+A AR +A+ RP+LIEA+TYR+GHH+TSDDST YR DE++ W P+TR
Sbjct: 289 LAVYNATKEARRVAL-TNRPVLIEAMTYRLGHHSTSDDSTAYRSSDEVQTWGDKDHPITR 347
Query: 300 FRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQ 359
F+K+I GWWN + E E + V+K++L AEK +K DLF DVYD P LR Q
Sbjct: 348 FKKYITERGWWNEEKEMEWQKEVKKRVLTEFAAAEKRKKAHYHDLFEDVYDELPLRLRRQ 407
Query: 360 EHSLRETIKKHPQDYP 375
L + ++ + YP
Sbjct: 408 RDELDAHVAEYKEHYP 423
|
|
| DICTYBASE|DDB_G0286335 bkdA "branched-chain alpha-keto acid dehydrogenase E1 alpha chain" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 971 (346.9 bits), Expect = 9.4e-98, P = 9.4e-98
Identities = 181/370 (48%), Positives = 247/370 (66%)
Query: 12 IPCYRVLDDDG---QPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYL 68
IPCY ++D +G +P D +F K E V IKMY M+TL MD+I Y+ QRQGRISFY+
Sbjct: 64 IPCYTIMDQEGVVSKPDQDPNFSK--EEV-IKMYTTMLTLNVMDSILYDVQRQGRISFYM 120
Query: 69 TTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMP 128
T+ GEE + D + QYRE GV +WRGF++ + NQC N+ D GKGRQMP
Sbjct: 121 TSFGEEAIHIGSAAALEMSDTIFAQYRETGVFMWRGFTINDIINQCCTNEHDLGKGRQMP 180
Query: 129 IHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNF 188
+H+GS K N T+SS + TQLP AVG++YA K+ + C + YFG+G SEGDFHAA+NF
Sbjct: 181 MHFGSRKINLQTISSPLTTQLPQAVGSSYAQKLAGEKNCTIVYFGEGAASEGDFHAAMNF 240
Query: 189 SAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKG-RAYGVRSIRVDGNDALAIYSAVH 247
+A P IF CRNN WAISTP +Q++ DG +G YG+++IRVDGND A+Y+
Sbjct: 241 AAALSTPTIFFCRNNKWAISTPSKEQYKGDGIAGRGPNGYGMKTIRVDGNDIWAVYNVTK 300
Query: 248 AAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESN 307
AR++A+ E P+LIEA+TYRVGHH+TSDDS++YR V+EI W+ ++P++R R ++
Sbjct: 301 LARKIAVEEQVPVLIEAMTYRVGHHSTSDDSSRYRTVEEINAWKEGKNPISRLRNYMNHK 360
Query: 308 GWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETI 367
GWW+ E E ++ R + +L AEK KP I+++FTDVYD NL EQ+ L E +
Sbjct: 361 GWWSDAQEKETIANARTTVRESLVNAEKQYKPSINEIFTDVYDKPTPNLIEQQKELIEHL 420
Query: 368 KKHPQDYPSN 377
K +P +YP N
Sbjct: 421 KLYPDEYPLN 430
|
|
| UNIPROTKB|F1RHA0 LOC100738911 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 970 (346.5 bits), Expect = 1.2e-97, P = 1.2e-97
Identities = 177/375 (47%), Positives = 240/375 (64%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K Y M L TMD I YE+QR
Sbjct: 31 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPQEKVLKFYKSMTLLNTMDRILYESQR 90
Query: 61 QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE N D V QYRE GVL++R + ++ F QC+ N +D
Sbjct: 91 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYSNVSD 150
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 151 LGKGRQMPVHYGCRERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 210
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
D HA NF+A E P+IF CRNNG+AISTP S+Q+R DG +G YG+ SIRVDGND
Sbjct: 211 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGILSIRVDGNDVF 270
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
A+Y+A AR A+ E +P LIEA+TYR+GHH+TSDDS+ YR VDE+ +W P++R
Sbjct: 271 AVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVSYWDKQDHPISRL 330
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
R +++S GWW+ + E R RK+++ A Q+AE+ KP + LF+DVY P+ LR+Q+
Sbjct: 331 RHYLQSRGWWDDEQEKAWRKQSRKKVMEAFQQAERKLKPNPNLLFSDVYQEMPAQLRKQQ 390
Query: 361 HSLRETIKKHPQDYP 375
SL ++ + + YP
Sbjct: 391 ESLARHLQTYGEHYP 405
|
|
| UNIPROTKB|I3LNR4 LOC100738911 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 970 (346.5 bits), Expect = 1.2e-97, P = 1.2e-97
Identities = 177/375 (47%), Positives = 240/375 (64%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K Y M L TMD I YE+QR
Sbjct: 67 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPQEKVLKFYKSMTLLNTMDRILYESQR 126
Query: 61 QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE N D V QYRE GVL++R + ++ F QC+ N +D
Sbjct: 127 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYSNVSD 186
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 187 LGKGRQMPVHYGCRERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 246
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
D HA NF+A E P+IF CRNNG+AISTP S+Q+R DG +G YG+ SIRVDGND
Sbjct: 247 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGILSIRVDGNDVF 306
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
A+Y+A AR A+ E +P LIEA+TYR+GHH+TSDDS+ YR VDE+ +W P++R
Sbjct: 307 AVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVSYWDKQDHPISRL 366
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
R +++S GWW+ + E R RK+++ A Q+AE+ KP + LF+DVY P+ LR+Q+
Sbjct: 367 RHYLQSRGWWDDEQEKAWRKQSRKKVMEAFQQAERKLKPNPNLLFSDVYQEMPAQLRKQQ 426
Query: 361 HSLRETIKKHPQDYP 375
SL ++ + + YP
Sbjct: 427 ESLARHLQTYGEHYP 441
|
|
| UNIPROTKB|E2RPW4 B3GNT8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 969 (346.2 bits), Expect = 1.5e-97, P = 1.5e-97
Identities = 176/375 (46%), Positives = 240/375 (64%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K Y M L TMD I YE+QR
Sbjct: 150 LEFIQPNVISGIPVYRVMDRQGQIINPSEDPHLPQEKVLKFYKSMTLLNTMDRILYESQR 209
Query: 61 QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE N D V QYRE GVL++R + ++ F QC+GN +D
Sbjct: 210 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNVSD 269
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 270 PGKGRQMPVHYGCKDRHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 329
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
D HA NF+A E P+IF CRNNG+AISTP S+Q+R DG +G YG+ SIRVDGND
Sbjct: 330 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVF 389
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
A+Y+A AR A+ E +P LIEA+TYR+GHH+TSDDS+ YR VDE+ +W P++R
Sbjct: 390 AVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPISRL 449
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
R +++S GWW+ + E R RK+++ A ++AE+ KP + LF+DVY P+ LR+Q+
Sbjct: 450 RHYLQSRGWWDDEQEKAWRKQSRKKVMEAFEQAERKPKPNPNLLFSDVYQEMPTQLRKQQ 509
Query: 361 HSLRETIKKHPQDYP 375
+L ++ + + YP
Sbjct: 510 EALARHLQTYGEHYP 524
|
|
| UNIPROTKB|F1PI86 B3GNT8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 969 (346.2 bits), Expect = 1.5e-97, P = 1.5e-97
Identities = 176/375 (46%), Positives = 240/375 (64%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K Y M L TMD I YE+QR
Sbjct: 100 LEFIQPNVISGIPVYRVMDRQGQIINPSEDPHLPQEKVLKFYKSMTLLNTMDRILYESQR 159
Query: 61 QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE N D V QYRE GVL++R + ++ F QC+GN +D
Sbjct: 160 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNVSD 219
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 220 PGKGRQMPVHYGCKDRHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 279
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
D HA NF+A E P+IF CRNNG+AISTP S+Q+R DG +G YG+ SIRVDGND
Sbjct: 280 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVF 339
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
A+Y+A AR A+ E +P LIEA+TYR+GHH+TSDDS+ YR VDE+ +W P++R
Sbjct: 340 AVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPISRL 399
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
R +++S GWW+ + E R RK+++ A ++AE+ KP + LF+DVY P+ LR+Q+
Sbjct: 400 RHYLQSRGWWDDEQEKAWRKQSRKKVMEAFEQAERKPKPNPNLLFSDVYQEMPTQLRKQQ 459
Query: 361 HSLRETIKKHPQDYP 375
+L ++ + + YP
Sbjct: 460 EALARHLQTYGEHYP 474
|
|
| UNIPROTKB|F5H5P2 BCKDHA "Uncharacterized protein" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 967 (345.5 bits), Expect = 2.5e-97, P = 2.5e-97
Identities = 176/375 (46%), Positives = 241/375 (64%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K+Y M L TMD I YE+QR
Sbjct: 99 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 158
Query: 61 QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE N D V QYRE GVL++R + ++ F QC+GN +D
Sbjct: 159 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISD 218
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 219 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 278
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
D HA NF+A E P+IF CRNNG+AISTP S+Q+R DG +G YG+ SIRVDGND
Sbjct: 279 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVF 338
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
A+Y+A AR A+ E +P LIEA+TYR+GHH+TSDDS+ YR VDE+ +W P++R
Sbjct: 339 AVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPISRL 398
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
R ++ S GWW+ + E R R++++ A ++AE+ KP + LF+DVY P+ LR+Q+
Sbjct: 399 RHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQ 458
Query: 361 HSLRETIKKHPQDYP 375
SL ++ + + YP
Sbjct: 459 ESLARHLQTYGEHYP 473
|
|
| UNIPROTKB|P12694 BCKDHA "2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 967 (345.5 bits), Expect = 2.5e-97, P = 2.5e-97
Identities = 176/375 (46%), Positives = 241/375 (64%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K+Y M L TMD I YE+QR
Sbjct: 65 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 124
Query: 61 QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE N D V QYRE GVL++R + ++ F QC+GN +D
Sbjct: 125 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISD 184
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 185 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 244
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
D HA NF+A E P+IF CRNNG+AISTP S+Q+R DG +G YG+ SIRVDGND
Sbjct: 245 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVF 304
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
A+Y+A AR A+ E +P LIEA+TYR+GHH+TSDDS+ YR VDE+ +W P++R
Sbjct: 305 AVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPISRL 364
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
R ++ S GWW+ + E R R++++ A ++AE+ KP + LF+DVY P+ LR+Q+
Sbjct: 365 RHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQ 424
Query: 361 HSLRETIKKHPQDYP 375
SL ++ + + YP
Sbjct: 425 ESLARHLQTYGEHYP 439
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| O45924 | ODBA_CAEEL | 1, ., 2, ., 4, ., 4 | 0.5095 | 0.9552 | 0.8422 | yes | no |
| P11960 | ODBA_RAT | 1, ., 2, ., 4, ., 4 | 0.48 | 0.9868 | 0.8503 | yes | no |
| Q5HQ76 | ODPA_STAEQ | 1, ., 2, ., 4, ., 1 | 0.3626 | 0.9236 | 0.9486 | yes | no |
| Q5SLR4 | ODBA_THET8 | 1, ., 2, ., 4, ., 4 | 0.4151 | 0.8578 | 0.8882 | yes | no |
| Q72GU1 | ODBA_THET2 | 1, ., 2, ., 4, ., 4 | 0.4151 | 0.8578 | 0.8882 | yes | no |
| Q54M22 | ODBA_DICDI | 1, ., 2, ., 4, ., 4 | 0.5027 | 0.9552 | 0.8231 | yes | no |
| P35485 | ODPA_ACHLA | 1, ., 2, ., 4, ., 1 | 0.3314 | 0.8763 | 0.9652 | yes | no |
| P60090 | ODPA_STAAW | 1, ., 2, ., 4, ., 1 | 0.3681 | 0.9236 | 0.9486 | yes | no |
| Q6GAC1 | ODPA_STAAS | 1, ., 2, ., 4, ., 1 | 0.3681 | 0.9236 | 0.9486 | yes | no |
| P12694 | ODBA_HUMAN | 1, ., 2, ., 4, ., 4 | 0.48 | 0.9868 | 0.8426 | yes | no |
| Q5HGZ1 | ODPA_STAAC | 1, ., 2, ., 4, ., 1 | 0.3681 | 0.9236 | 0.9486 | yes | no |
| O06161 | BKDA_MYCTU | 1, ., 2, ., 4, ., 4 | 0.3547 | 0.8973 | 0.9291 | yes | no |
| P11178 | ODBA_BOVIN | 1, ., 2, ., 4, ., 4 | 0.48 | 0.9868 | 0.8241 | yes | no |
| A5A6H9 | ODBA_PANTR | 1, ., 2, ., 4, ., 4 | 0.4853 | 0.9868 | 0.8426 | yes | no |
| Q9I1M2 | ODBA_PSEAE | 1, ., 2, ., 4, ., 4 | 0.3692 | 0.9263 | 0.8585 | yes | no |
| Q6GHZ2 | ODPA_STAAR | 1, ., 2, ., 4, ., 1 | 0.3653 | 0.9236 | 0.9486 | yes | no |
| Q4MTG0 | ODPA_BACCE | 1, ., 2, ., 4, ., 1 | 0.3549 | 0.8947 | 0.9164 | yes | no |
| P60089 | ODPA_STAAM | 1, ., 2, ., 4, ., 1 | 0.3681 | 0.9236 | 0.9486 | yes | no |
| Q8CPN3 | ODPA_STAES | 1, ., 2, ., 4, ., 1 | 0.3626 | 0.9236 | 0.9486 | yes | no |
| P50136 | ODBA_MOUSE | 1, ., 2, ., 4, ., 4 | 0.4773 | 0.9868 | 0.8484 | yes | no |
| P21881 | ODPA_BACSU | 1, ., 2, ., 4, ., 1 | 0.3569 | 0.8947 | 0.9164 | yes | no |
| Q820A6 | ODPA_STAAN | 1, ., 2, ., 4, ., 1 | 0.3681 | 0.9236 | 0.9486 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 380 | |||
| cd02000 | 293 | cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosph | 1e-144 | |
| COG1071 | 358 | COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogena | 1e-128 | |
| TIGR03181 | 341 | TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E | 1e-124 | |
| pfam00676 | 303 | pfam00676, E1_dh, Dehydrogenase E1 component | 1e-111 | |
| TIGR03182 | 315 | TIGR03182, PDH_E1_alph_y, pyruvate dehydrogenase E | 3e-70 | |
| PLN02269 | 362 | PLN02269, PLN02269, Pyruvate dehydrogenase E1 comp | 6e-44 | |
| CHL00149 | 341 | CHL00149, odpA, pyruvate dehydrogenase E1 componen | 3e-42 | |
| PLN02374 | 433 | PLN02374, PLN02374, pyruvate dehydrogenase (acetyl | 2e-35 | |
| cd00568 | 168 | cd00568, TPP_enzymes, Thiamine pyrophosphate (TPP) | 1e-11 | |
| cd02012 | 255 | cd02012, TPP_TK, Thiamine pyrophosphate (TPP) fami | 2e-10 | |
| PRK05899 | 586 | PRK05899, PRK05899, transketolase; Reviewed | 8e-08 | |
| COG3959 | 243 | COG3959, COG3959, Transketolase, N-terminal subuni | 3e-06 | |
| cd02002 | 178 | cd02002, TPP_BFDC, Thiamine pyrophosphate (TPP) fa | 5e-05 | |
| COG0021 | 663 | COG0021, TktA, Transketolase [Carbohydrate transpo | 4e-04 | |
| cd02007 | 195 | cd02007, TPP_DXS, Thiamine pyrophosphate (TPP) fam | 0.002 |
| >gnl|CDD|238958 cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC) | Back alignment and domain information |
|---|
Score = 409 bits (1054), Expect = e-144
Identities = 124/294 (42%), Positives = 178/294 (60%), Gaps = 2/294 (0%)
Query: 41 MYNDMVTLQTMDTIFYEAQRQGRIS-FYLTTSGEEAINIASAAAIKNDDFVVPQYREPGV 99
+Y MV ++ D E RQG+I FY + G+EA+ + AAA++ D+V P YR+ G
Sbjct: 1 LYRTMVLIRRFDERLLELYRQGKIGGFYHLSIGQEAVAVGVAAALRPGDWVFPTYRDHGH 60
Query: 100 LLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYAL 159
L RG ++E + FG + KGR +H G + N+F + + Q+P A GAA AL
Sbjct: 61 ALARGVDLKEMLAELFGKETGPCKGRGGSMHIGDKEKNFFGGNGIVGGQVPLAAGAALAL 120
Query: 160 KMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDG 219
K +D AV +FGDG T+EGDFH ALNF+A+ + PVIF+C NNG+AISTP S Q
Sbjct: 121 KYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFVCENNGYAISTPTSRQTAGTS 180
Query: 220 AVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDST 279
+ AYG+ IRVDGND LA+Y A A E A G P LIEA+TYR+G H+TSDD +
Sbjct: 181 IADRAAAYGIPGIRVDGNDVLAVYEAAKEAVERARAGGGPTLIEAVTYRLGGHSTSDDPS 240
Query: 280 KYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEA 333
+YR +E+E W+ +DP+ R RK++ G + + + + V+ ++ A++ A
Sbjct: 241 RYRTKEEVEEWK-KRDPILRLRKYLIEAGILTEEELAAIEAEVKAEVEEAVEFA 293
|
PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine). Length = 293 |
| >gnl|CDD|223997 COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 371 bits (955), Expect = e-128
Identities = 138/356 (38%), Positives = 205/356 (57%), Gaps = 6/356 (1%)
Query: 15 YRVLDDDGQPFPDSSFV--KVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRIS-FYLTTS 71
RVLD+DG+ + +S+ +++Y M+ ++ D + QRQG+I FY
Sbjct: 4 IRVLDEDGRAVDELPGPNAALSKEELLELYRLMLLIRRFDEKMLQLQRQGKIGGFYHLYI 63
Query: 72 GEEAINIASAAAIKND-DFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIH 130
G+EA+ + +AAA++ D++ P YR+ G LL RG ++E + G KGR +H
Sbjct: 64 GQEAVQVGAAAALRPGEDWIFPTYRDHGHLLARGVPLKEIMAELLGKATGPCKGRGGSMH 123
Query: 131 YGSNKHNYFTVSSTIATQLPHAVGAAYALKM-DRKDACAVTYFGDGGTSEGDFHAALNFS 189
Y + + S + TQ+P A GAA ALK KD AV +FGDG T++GDFH ALNF+
Sbjct: 124 YSDKEKGFLGGSGIVGTQIPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEALNFA 183
Query: 190 AVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAA 249
AV + PV+F+ NN +AIS P S Q ++ + AYG+ +RVDGND LA+Y A A
Sbjct: 184 AVWKLPVVFVIENNQYAISVPRSRQTAAEIIAARAAAYGIPGVRVDGNDVLAVYEAAKEA 243
Query: 250 REMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGW 309
E A P LIEA+TYR G H+TSDD +KYR +E+E W+ +DP+ R RK++ G
Sbjct: 244 VERARAGEGPTLIEAVTYRYGGHSTSDDPSKYRSKEEVEEWK-KRDPIVRLRKYLIEAGI 302
Query: 310 WNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRE 365
+ + + + + ++ A++ AE + P +S+LF DVY P +L EQ L E
Sbjct: 303 LSEEELEAIEAEAKAEVDEAVEFAEASPYPDVSELFEDVYAEGPPHLEEQREELEE 358
|
Length = 358 |
| >gnl|CDD|213783 TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit | Back alignment and domain information |
|---|
Score = 361 bits (930), Expect = e-124
Identities = 143/352 (40%), Positives = 194/352 (55%), Gaps = 18/352 (5%)
Query: 13 PCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEA---QRQGRISFYLT 69
+VLD+DG +S+ +++Y DMV + DT +A QRQGR+ Y
Sbjct: 1 ELVQVLDEDGNVVDPEPAPDLSDEELVELYRDMVLTRRFDT---KALALQRQGRLGTYAP 57
Query: 70 TSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPI 129
G+EA + SA A++ DD+V P YR+ +L RG + E G++ +G P
Sbjct: 58 NLGQEAAQVGSALALRKDDWVFPSYRDHAAMLARGVPLVEILLYWRGDE----RGSWDP- 112
Query: 130 HYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFS 189
N + I TQ HA G AYALK+ +D AVTYFGDGGTSEGDF+ ALNF+
Sbjct: 113 ----EGVNILPPNIPIGTQYLHAAGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEALNFA 168
Query: 190 AVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAA 249
V +APV+F +NN WAIS P S Q + K AYG+ ++VDGND LA+Y+ A
Sbjct: 169 GVFKAPVVFFVQNNQWAISVPRSKQTAAPTLAQKAIAYGIPGVQVDGNDVLAVYAVTKEA 228
Query: 250 REMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEI-EWWRTTQDPVTRFRKWIESNG 308
E A G P LIEA+TYR+G HTT+DD T+YR +E EW + DP+ R RK++E G
Sbjct: 229 VERARSGGGPTLIEAVTYRLGPHTTADDPTRYRTKEEEEEWRKK--DPILRLRKYLERKG 286
Query: 309 WWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
W+ + E L ++ A+ EA PP+ D+F VY P L EQ
Sbjct: 287 LWDEEQEEALEEEAEAEVAEAVAEALALPPPPVDDIFDHVYAELPPELEEQR 338
|
Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc [Energy metabolism, Pyruvate dehydrogenase]. Length = 341 |
| >gnl|CDD|201386 pfam00676, E1_dh, Dehydrogenase E1 component | Back alignment and domain information |
|---|
Score = 326 bits (837), Expect = e-111
Identities = 115/302 (38%), Positives = 166/302 (54%), Gaps = 3/302 (0%)
Query: 44 DMVTL-QTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLW 102
M+TL + D QR+G F +G+EA+ + AAA+ D+V+P YR+ G LL
Sbjct: 2 RMMTLRRMEDARDALYQRKGIRGFCHLYAGQEALQVGIAAALNPGDYVIPTYRDHGNLLA 61
Query: 103 RGFSMQEFANQCFGNK--ADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALK 160
RG S+++ + GN+ GKG M +Y + ++ + + Q+P G A A K
Sbjct: 62 RGVSLEQVMAELTGNEAGCSKGKGGSMHGYYAPKNNRFYGGNGIVGAQVPLGAGIALAAK 121
Query: 161 MDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGA 220
K A+T FGDG T++G F ALNF+A+ + PVIF+C NN +AISTP S
Sbjct: 122 YRGKKEVAITLFGDGATNQGQFFEALNFAALWKLPVIFVCENNQYAISTPAERSSASTTY 181
Query: 221 VVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTK 280
+ R YG+ IRVDG D LA+Y AV A E A P LIE +TYR G H+ SDD +
Sbjct: 182 ADRARGYGIPGIRVDGMDPLAVYQAVKFAAERARTGNGPTLIELVTYRYGGHSMSDDPST 241
Query: 281 YRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPP 340
YR +E+E R +DP+ R +K + S G + + E+ VRK+I A+++AE +P
Sbjct: 242 YRTREEVEEVRKKKDPIKRLKKHLVSRGVVSEEELKEIEKEVRKEIEEAVKKAESDPEPN 301
Query: 341 IS 342
Sbjct: 302 PE 303
|
This family uses thiamine pyrophosphate as a cofactor. This family includes pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate dehydrogenase. Length = 303 |
| >gnl|CDD|234139 TIGR03182, PDH_E1_alph_y, pyruvate dehydrogenase E1 component, alpha subunit | Back alignment and domain information |
|---|
Score = 222 bits (569), Expect = 3e-70
Identities = 100/317 (31%), Positives = 166/317 (52%), Gaps = 11/317 (3%)
Query: 38 AIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYRE 96
+++Y DM+ ++ + + G+I F G+EA+ + AA+K DD+V+ YR+
Sbjct: 4 LLELYRDMLLIRRFEEKAGQLYGMGKIGGFCHLYIGQEAVAVGLIAALKPDDYVITSYRD 63
Query: 97 PGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAA 156
G L RG +E + G + KG+ +H + N++ + Q+P A G A
Sbjct: 64 HGHALARGVPPKEVMAELTGRETGCSKGKGGSMHMFDREKNFYGGHGIVGAQVPLATGLA 123
Query: 157 YALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR 216
+A K D +FGDG ++G F+ + N +A+ + PVIF+ NN +A+ T + R
Sbjct: 124 FANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWKLPVIFVIENNLYAMGTAVE---R 180
Query: 217 SDGAV----VKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHH 272
S +V +G ++G+ RVDG D LA+ A A E A PIL+E TYR H
Sbjct: 181 SS-SVTDLYKRGESFGIPGERVDGMDVLAVREAAKEAVERARSGKGPILLEMKTYRFRGH 239
Query: 273 TTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQE 332
+ S D KYR +E+E WR +DP+ + + + G + + E+ VR ++ A++
Sbjct: 240 SMS-DPAKYRSKEEVEEWR-KRDPIEKLKARLIEQGIASEEELKEIDKEVRAEVEEAVEF 297
Query: 333 AEKAEKPPISDLFTDVY 349
AE + +PP+ +L+TDVY
Sbjct: 298 AENSPEPPVEELYTDVY 314
|
Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc [Energy metabolism, Pyruvate dehydrogenase]. Length = 315 |
| >gnl|CDD|215152 PLN02269, PLN02269, Pyruvate dehydrogenase E1 component subunit alpha | Back alignment and domain information |
|---|
Score = 155 bits (394), Expect = 6e-44
Identities = 101/336 (30%), Positives = 170/336 (50%), Gaps = 26/336 (7%)
Query: 26 PDSSFVKVSEGVAIKMYNDMVTLQTMDT---IFYEAQR-QGRISFYLTTSGEEAINIASA 81
P S V+ S+ + + DM ++ M+ Y+A+ +G Y G+EA+ +
Sbjct: 20 PPSRTVETSKQELVDFFRDMYLMRRMEIAADSLYKAKLIRGFCHLY---DGQEAVAVGME 76
Query: 82 AAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTV 141
AAI +D ++ YR+ L RG ++ E + G K +G+ +H+ N++
Sbjct: 77 AAITKEDAIITAYRDHCTHLGRGGTVLEVFAELMGRKDGCSRGKGGSMHFYKKDANFYGG 136
Query: 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICR 201
+ Q+P G A+A K ++++ A +GDG ++G ALN +A+ + PVIF+C
Sbjct: 137 HGIVGAQVPLGAGLAFAQKYNKEENVAFALYGDGAANQGQLFEALNIAALWDLPVIFVCE 196
Query: 202 NNGWAISTPI-----SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGE 256
NN + + T S + G V G ++VDG D LA+ A A+E A+
Sbjct: 197 NNHYGMGTAEWRAAKSPAYYKRGDYVPG-------LKVDGMDVLAVKQACKFAKEHALSN 249
Query: 257 GRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIES 316
G PI++E TYR H+ SD + YR DEI R +DP+ R RK + ++ E+
Sbjct: 250 G-PIVLEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERVRKLLLAHELAT---EA 305
Query: 317 ELRS---SVRKQILHALQEAEKAEKPPISDLFTDVY 349
EL+ +RK++ A+ +A+++ P S+LFT+VY
Sbjct: 306 ELKDIEKEIRKEVDDAVAKAKESPMPDPSELFTNVY 341
|
Length = 362 |
| >gnl|CDD|177069 CHL00149, odpA, pyruvate dehydrogenase E1 component alpha subunit; Reviewed | Back alignment and domain information |
|---|
Score = 150 bits (381), Expect = 3e-42
Identities = 94/344 (27%), Positives = 159/344 (46%), Gaps = 30/344 (8%)
Query: 24 PFPDSSFVKVSEGVAIKMYNDMVTLQTMD----TIFYEAQRQGRISFYLTTSGEEAINIA 79
P +S+ ++ + +Y DM+ + + ++Y + G + Y +G+EA++
Sbjct: 8 PLTNSNENNINSMWLLVLYEDMLLGRNFEDMCAQMYYRGKMFGFVHLY---NGQEAVSTG 64
Query: 80 SAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYF 139
+ D+V YR+ L +G + + FG + +GR +H S HN+
Sbjct: 65 VIKLLAETDYVCSTYRDHVHALSKGVPPKNVMAELFGKETGCSRGRGGSMHIFSAPHNFL 124
Query: 140 TVSSTIATQLPHAVGAAYALKMDRKDACAVT--------YFGDGGTSEGDFHAALNFSAV 191
+ I +P A+GAA+ + R+ +FGDG T+ G F LN + +
Sbjct: 125 GGFAFIGEGIPIALGAAFQ-SIYRQQVLKEVQPLRVTACFFGDGTTNNGQFFECLNMAVL 183
Query: 192 TEAPVIFICRNNGWAI------STPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSA 245
+ P+IF+ NN WAI ST I + + K A+G+ I VDG D LA+
Sbjct: 184 WKLPIIFVVENNQWAIGMAHHRSTSIPEIHK------KAEAFGLPGIEVDGMDVLAVREV 237
Query: 246 VHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIE 305
A E A P LIEALTYR H+ +D + R E E W +DP+ + + +I
Sbjct: 238 AKEAVERARQGDGPTLIEALTYRFRGHSLADPD-ELRSKQEKEAW-VARDPIKKLKSYII 295
Query: 306 SNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVY 349
N + ++++ V+ +I A+Q A + +P ISDL ++
Sbjct: 296 DNELASQKELNKIQREVKIEIEQAVQFAISSPEPNISDLKKYLF 339
|
Length = 341 |
| >gnl|CDD|215213 PLN02374, PLN02374, pyruvate dehydrogenase (acetyl-transferring) | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 2e-35
Identities = 96/347 (27%), Positives = 165/347 (47%), Gaps = 32/347 (9%)
Query: 22 GQPFPDSSFVKVSEGVAIKMYNDMVTLQTMD----TIFYEAQRQGRISFYLTTSGEEAIN 77
+S + V+ +++Y DMV ++ + ++Y + G + Y +G+EA++
Sbjct: 72 KNSKASASDLLVTREEGLELYEDMVLGRSFEDMCAQMYYRGKMFGFVHLY---NGQEAVS 128
Query: 78 IASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHN 137
+K DD VV YR+ L +G + ++ FG +G+ +H S +HN
Sbjct: 129 TGFIKLLKKDDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHN 188
Query: 138 YFTVSSTIATQLPHAVGAAYALKMDRK-------DACAVTYFGDGGTSEGDFHAALNFSA 190
+ I +P A GAA++ K R+ D + +FGDG + G F LN +A
Sbjct: 189 LLGGFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCNNGQFFECLNMAA 248
Query: 191 VTEAPVIFICRNNGWAISTPISDQFR--SDGAV-VKGRAYGVRSIRVDGNDALAIYSAVH 247
+ + P++F+ NN WAI R SD + KG A+G+ + VDG D L +
Sbjct: 249 LWKLPIVFVVENNLWAIGM---SHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAK 305
Query: 248 AAREMA-IGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIES 306
A E A GEG P L+E TYR H+ +D P ++ + +DP+ +K++
Sbjct: 306 EAIERARRGEG-PTLVECETYRFRGHSLADPDELRDPAEKAHY--AARDPIAALKKYLIE 362
Query: 307 NGWWNGDIESELRSSVRKQILHALQE----AEKAEKPPISDLFTDVY 349
NG E+EL+ ++ K+I +++ A+ + PP S L +V+
Sbjct: 363 NGLAT---EAELK-AIEKKIDEVVEDAVEFADASPLPPRSQLLENVF 405
|
Length = 433 |
| >gnl|CDD|238318 cd00568, TPP_enzymes, Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 1e-11
Identities = 40/145 (27%), Positives = 52/145 (35%), Gaps = 29/145 (20%)
Query: 136 HNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALN--FSAVTE 193
T + LP A+GAA A D V GDGG F +AV
Sbjct: 39 FLTSTGFGAMGYGLPAAIGAALA----APDRPVVCIAGDGG-----FMMTGQELATAVRY 89
Query: 194 -APVIFICRNNGWAISTPISDQFRSDGAVVK-----------GRAYGVRSIRVDGNDALA 241
PVI + NNG + + + G V AYG + +RV+ + L
Sbjct: 90 GLPVIVVVFNNGGYGTIRMHQEAFYGGRVSGTDLSNPDFAALAEAYGAKGVRVEDPEDLE 149
Query: 242 IYSAVHAAREMAIGEGRPILIEALT 266
AA A+ G P LIE T
Sbjct: 150 ------AALAEALAAGGPALIEVKT 168
|
These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes. Length = 168 |
| >gnl|CDD|238970 cd02012, TPP_TK, Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 2e-10
Identities = 38/119 (31%), Positives = 54/119 (45%), Gaps = 4/119 (3%)
Query: 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTE-APVIFICRNNGWAI 207
L AVG A A K+ D GDG EG A +F+ + +I I +N I
Sbjct: 111 LSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLIAIVDSNRIQI 170
Query: 208 STPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266
P D ++ K A+G I VDG+D I +A+ A++ +G+P LI A T
Sbjct: 171 DGPTDDILFTEDLAKKFEAFGWNVIEVDGHDVEEILAALEEAKK---SKGKPTLIIAKT 226
|
In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity. Length = 255 |
| >gnl|CDD|235639 PRK05899, PRK05899, transketolase; Reviewed | Back alignment and domain information |
|---|
Score = 53.6 bits (130), Expect = 8e-08
Identities = 44/132 (33%), Positives = 57/132 (43%), Gaps = 22/132 (16%)
Query: 149 LPHAVGAAYALKM-----DRKDACAVTYF-----GDGGTSEGDFHAALNFSAVTE--APV 196
L +AVG A A K +R V ++ GDG EG H A + A +
Sbjct: 124 LANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGDGDLMEGISHEACSL-AGHLKLGNL 182
Query: 197 IFICRNNGWAISTPISDQFRSDGAVVKGR--AYGVRSIRVDGNDALAIYSAVHAAREMAI 254
I I +N +I P F D VK R AYG I VDG+D AI +A+ A+
Sbjct: 183 IVIYDDNRISIDGPTEGWFTED---VKKRFEAYGWHVIEVDGHDVEAIDAAIEEAKA--- 236
Query: 255 GEGRPILIEALT 266
+P LI A T
Sbjct: 237 -STKPTLIIAKT 247
|
Length = 586 |
| >gnl|CDD|226468 COG3959, COG3959, Transketolase, N-terminal subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 3e-06
Identities = 32/120 (26%), Positives = 46/120 (38%), Gaps = 6/120 (5%)
Query: 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAP--VIFICRNNGWA 206
L AVG A K+ GDG EG A +A + + + RN
Sbjct: 125 LSVAVGMALGAKLKGSPYRVYVILGDGELDEGQVWEAAMTAAHYKLDNLIAIVDRNKL-Q 183
Query: 207 ISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266
+ + + K A+G I VDG+D I A+ A+ +GRP +I A T
Sbjct: 184 LDGETEEIMPKEPLADKWEAFGWEVIEVDGHDIEEIVEALEKAKGS---KGRPTVIIAKT 240
|
Length = 243 |
| >gnl|CDD|238960 cd02002, TPP_BFDC, Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC) | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 5e-05
Identities = 36/143 (25%), Positives = 50/143 (34%), Gaps = 44/143 (30%)
Query: 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFS---AVTEA----PVIF-IC 200
LP AVGAA A DRK + GDG + ++ T A PV I
Sbjct: 55 LPAAVGAALANP-DRKVVAII---GDG---------SFMYTIQALWTAARYGLPVTVVIL 101
Query: 201 RNNGWAISTPISDQFRSDGAVVKG-----------------RAYGVRSIRVDGNDALAIY 243
N G+ + +G +A+GV + RV+ + L
Sbjct: 102 NNRGYGALRSFLKRVGPEGPGENAPDGLDLLDPGIDFAAIAKAFGVEAERVETPEELD-- 159
Query: 244 SAVHAAREMAIGEGRPILIEALT 266
A A+ EG P LIE +
Sbjct: 160 ----EALREALAEGGPALIEVVV 178
|
P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors. Length = 178 |
| >gnl|CDD|223100 COG0021, TktA, Transketolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 4e-04
Identities = 43/132 (32%), Positives = 55/132 (41%), Gaps = 20/132 (15%)
Query: 149 LPHAVGAAYALKM-----DRKDACAV---TY--FGDGGTSEGDFHAALNFSAV-TEAPVI 197
L +AVG A A K +R V TY GDG EG H A + + +I
Sbjct: 122 LANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVGDGCLMEGVSHEAASLAGHLKLGKLI 181
Query: 198 FICRNNGWAISTPISDQFRSDGAVVKGR--AYGVRSIRV-DGNDALAIYSAVHAAREMAI 254
+ +N +I S F D V R AYG IRV DG+D AI A+ A+
Sbjct: 182 VLYDSNDISIDGDTSLSFTED---VAKRFEAYGWNVIRVIDGHDLEAIDKAIEEAKA--- 235
Query: 255 GEGRPILIEALT 266
+P LI T
Sbjct: 236 STDKPTLIIVKT 247
|
Length = 663 |
| >gnl|CDD|238965 cd02007, TPP_DXS, Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 0.002
Identities = 30/135 (22%), Positives = 57/135 (42%), Gaps = 16/135 (11%)
Query: 135 KHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA 194
+++ F + +T + A+G A A + K + GDG + G ALN + ++
Sbjct: 68 EYDAFGTGHS-STSISAALGMAVARDLKGKKRKVIAVIGDGALTGGMAFEALNNAGYLKS 126
Query: 195 PVIFICRNNGWAISTPISDQ---FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAARE 251
+I I +N +IS + F G R G VDG++ A+ + ++
Sbjct: 127 NMIVILNDNEMSISPNVGTPGNLFEELGF----RYIGP----VDGHNIEALIKVLKEVKD 178
Query: 252 MAIGEGRPILIEALT 266
+ P+L+ +T
Sbjct: 179 L----KGPVLLHVVT 189
|
Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6). Length = 195 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 380 | |||
| COG1071 | 358 | AcoA Pyruvate/2-oxoglutarate dehydrogenase complex | 100.0 | |
| KOG1182 | 432 | consensus Branched chain alpha-keto acid dehydroge | 100.0 | |
| PLN02269 | 362 | Pyruvate dehydrogenase E1 component subunit alpha | 100.0 | |
| CHL00149 | 341 | odpA pyruvate dehydrogenase E1 component alpha sub | 100.0 | |
| TIGR03181 | 341 | PDH_E1_alph_x pyruvate dehydrogenase E1 component, | 100.0 | |
| TIGR03182 | 315 | PDH_E1_alph_y pyruvate dehydrogenase E1 component, | 100.0 | |
| PLN02374 | 433 | pyruvate dehydrogenase (acetyl-transferring) | 100.0 | |
| KOG0225 | 394 | consensus Pyruvate dehydrogenase E1, alpha subunit | 100.0 | |
| PF00676 | 300 | E1_dh: Dehydrogenase E1 component; InterPro: IPR00 | 100.0 | |
| cd02000 | 293 | TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) | 100.0 | |
| PRK09404 | 924 | sucA 2-oxoglutarate dehydrogenase E1 component; Re | 100.0 | |
| TIGR00239 | 929 | 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 compon | 100.0 | |
| cd02016 | 265 | TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) fami | 100.0 | |
| PRK12270 | 1228 | kgd alpha-ketoglutarate decarboxylase; Reviewed | 100.0 | |
| PRK12315 | 581 | 1-deoxy-D-xylulose-5-phosphate synthase; Provision | 100.0 | |
| COG3959 | 243 | Transketolase, N-terminal subunit [Carbohydrate tr | 99.98 | |
| KOG0450 | 1017 | consensus 2-oxoglutarate dehydrogenase, E1 subunit | 99.97 | |
| COG0567 | 906 | SucA 2-oxoglutarate dehydrogenase complex, dehydro | 99.97 | |
| KOG0451 | 913 | consensus Predicted 2-oxoglutarate dehydrogenase, | 99.96 | |
| PRK12754 | 663 | transketolase; Reviewed | 99.96 | |
| TIGR00232 | 653 | tktlase_bact transketolase, bacterial and yeast. T | 99.96 | |
| cd02012 | 255 | TPP_TK Thiamine pyrophosphate (TPP) family, Transk | 99.96 | |
| PF00456 | 332 | Transketolase_N: Transketolase, thiamine diphospha | 99.96 | |
| PRK12753 | 663 | transketolase; Reviewed | 99.96 | |
| PRK05899 | 624 | transketolase; Reviewed | 99.96 | |
| PTZ00089 | 661 | transketolase; Provisional | 99.96 | |
| cd02007 | 195 | TPP_DXS Thiamine pyrophosphate (TPP) family, DXS s | 99.95 | |
| cd02017 | 386 | TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) fam | 99.95 | |
| PLN02790 | 654 | transketolase | 99.95 | |
| PRK05444 | 580 | 1-deoxy-D-xylulose-5-phosphate synthase; Provision | 99.95 | |
| TIGR00204 | 617 | dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP s | 99.94 | |
| TIGR00759 | 885 | aceE pyruvate dehydrogenase E1 component, homodime | 99.93 | |
| PRK12571 | 641 | 1-deoxy-D-xylulose-5-phosphate synthase; Provision | 99.92 | |
| TIGR03186 | 889 | AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. S | 99.92 | |
| PLN02234 | 641 | 1-deoxy-D-xylulose-5-phosphate synthase | 99.92 | |
| cd02011 | 227 | TPP_PK Thiamine pyrophosphate (TPP) family, Phosph | 99.92 | |
| COG0021 | 663 | TktA Transketolase [Carbohydrate transport and met | 99.91 | |
| PRK13012 | 896 | 2-oxoacid dehydrogenase subunit E1; Provisional | 99.91 | |
| PLN02582 | 677 | 1-deoxy-D-xylulose-5-phosphate synthase | 99.91 | |
| PRK09405 | 891 | aceE pyruvate dehydrogenase subunit E1; Reviewed | 99.9 | |
| KOG0523 | 632 | consensus Transketolase [Carbohydrate transport an | 99.89 | |
| PF13292 | 270 | DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate syn | 99.82 | |
| COG1154 | 627 | Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme m | 99.8 | |
| PRK05261 | 785 | putative phosphoketolase; Provisional | 99.8 | |
| PRK11864 | 300 | 2-ketoisovalerate ferredoxin oxidoreductase subuni | 99.8 | |
| cd02004 | 172 | TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) fam | 99.77 | |
| cd02013 | 196 | TPP_Xsc_like Thiamine pyrophosphate (TPP) family, | 99.77 | |
| cd00568 | 168 | TPP_enzymes Thiamine pyrophosphate (TPP) enzyme fa | 99.77 | |
| PLN02225 | 701 | 1-deoxy-D-xylulose-5-phosphate synthase | 99.75 | |
| cd02006 | 202 | TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl s | 99.75 | |
| cd02002 | 178 | TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC | 99.74 | |
| cd02014 | 178 | TPP_POX Thiamine pyrophosphate (TPP) family, Pyruv | 99.72 | |
| PRK06163 | 202 | hypothetical protein; Provisional | 99.72 | |
| cd02008 | 178 | TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, | 99.71 | |
| cd02015 | 186 | TPP_AHAS Thiamine pyrophosphate (TPP) family, Acet | 99.71 | |
| cd02003 | 205 | TPP_IolD Thiamine pyrophosphate (TPP) family, IolD | 99.71 | |
| cd03372 | 179 | TPP_ComE Thiamine pyrophosphate (TPP) family, ComE | 99.7 | |
| cd02010 | 177 | TPP_ALS Thiamine pyrophosphate (TPP) family, Aceto | 99.7 | |
| cd02001 | 157 | TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) famil | 99.7 | |
| TIGR03846 | 181 | sulfopy_beta sulfopyruvate decarboxylase, beta sub | 99.69 | |
| cd03371 | 188 | TPP_PpyrDC Thiamine pyrophosphate (TPP) family, Pp | 99.69 | |
| cd02005 | 183 | TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, | 99.68 | |
| PF02775 | 153 | TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-ter | 99.66 | |
| PRK07524 | 535 | hypothetical protein; Provisional | 99.65 | |
| cd02009 | 175 | TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) fa | 99.64 | |
| PRK08327 | 569 | acetolactate synthase catalytic subunit; Validated | 99.64 | |
| COG2609 | 887 | AceE Pyruvate dehydrogenase complex, dehydrogenase | 99.62 | |
| TIGR01504 | 588 | glyox_carbo_lig glyoxylate carboligase. Glyoxylate | 99.61 | |
| cd03375 | 193 | TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-o | 99.61 | |
| PRK08266 | 542 | hypothetical protein; Provisional | 99.61 | |
| PRK07092 | 530 | benzoylformate decarboxylase; Reviewed | 99.61 | |
| PRK06154 | 565 | hypothetical protein; Provisional | 99.6 | |
| PRK12474 | 518 | hypothetical protein; Provisional | 99.6 | |
| COG0028 | 550 | IlvB Thiamine pyrophosphate-requiring enzymes [ace | 99.6 | |
| PRK06725 | 570 | acetolactate synthase 3 catalytic subunit; Validat | 99.6 | |
| cd03376 | 235 | TPP_PFOR_porB_like Thiamine pyrophosphate (TPP fam | 99.59 | |
| PRK06546 | 578 | pyruvate dehydrogenase; Provisional | 99.58 | |
| PRK09107 | 595 | acetolactate synthase 3 catalytic subunit; Validat | 99.58 | |
| PRK11269 | 591 | glyoxylate carboligase; Provisional | 99.58 | |
| PRK05858 | 542 | hypothetical protein; Provisional | 99.58 | |
| PRK06882 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 99.57 | |
| TIGR02418 | 539 | acolac_catab acetolactate synthase, catabolic. Ace | 99.57 | |
| PRK07064 | 544 | hypothetical protein; Provisional | 99.56 | |
| PRK07979 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 99.56 | |
| TIGR03297 | 361 | Ppyr-DeCO2ase phosphonopyruvate decarboxylase. Thi | 99.56 | |
| PRK07418 | 616 | acetolactate synthase 3 catalytic subunit; Reviewe | 99.56 | |
| PRK09124 | 574 | pyruvate dehydrogenase; Provisional | 99.56 | |
| PRK07525 | 588 | sulfoacetaldehyde acetyltransferase; Validated | 99.56 | |
| PRK08199 | 557 | thiamine pyrophosphate protein; Validated | 99.56 | |
| PRK06457 | 549 | pyruvate dehydrogenase; Provisional | 99.56 | |
| PRK07586 | 514 | hypothetical protein; Validated | 99.56 | |
| PLN02573 | 578 | pyruvate decarboxylase | 99.55 | |
| PRK06112 | 578 | acetolactate synthase catalytic subunit; Validated | 99.55 | |
| cd02018 | 237 | TPP_PFOR Thiamine pyrophosphate (TPP family), Pyru | 99.55 | |
| PRK06456 | 572 | acetolactate synthase catalytic subunit; Reviewed | 99.55 | |
| PRK06965 | 587 | acetolactate synthase 3 catalytic subunit; Validat | 99.55 | |
| PRK07710 | 571 | acetolactate synthase catalytic subunit; Reviewed | 99.55 | |
| CHL00099 | 585 | ilvB acetohydroxyacid synthase large subunit | 99.54 | |
| PLN02470 | 585 | acetolactate synthase | 99.54 | |
| PRK08979 | 572 | acetolactate synthase 3 catalytic subunit; Validat | 99.54 | |
| TIGR02720 | 575 | pyruv_oxi_spxB pyruvate oxidase. Members of this f | 99.54 | |
| TIGR03393 | 539 | indolpyr_decarb indolepyruvate decarboxylase, Erwi | 99.54 | |
| PRK08273 | 597 | thiamine pyrophosphate protein; Provisional | 99.54 | |
| PRK08617 | 552 | acetolactate synthase; Reviewed | 99.54 | |
| PRK09628 | 277 | oorB 2-oxoglutarate-acceptor oxidoreductase subuni | 99.53 | |
| PRK08527 | 563 | acetolactate synthase 3 catalytic subunit; Validat | 99.53 | |
| PRK08322 | 547 | acetolactate synthase; Reviewed | 99.53 | |
| TIGR03457 | 579 | sulphoacet_xsc sulfoacetaldehyde acetyltransferase | 99.53 | |
| PRK08155 | 564 | acetolactate synthase catalytic subunit; Validated | 99.53 | |
| TIGR03254 | 554 | oxalate_oxc oxalyl-CoA decarboxylase. In a number | 99.53 | |
| PRK06466 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 99.53 | |
| PRK05778 | 301 | 2-oxoglutarate ferredoxin oxidoreductase subunit b | 99.53 | |
| TIGR00118 | 558 | acolac_lg acetolactate synthase, large subunit, bi | 99.52 | |
| PRK08611 | 576 | pyruvate oxidase; Provisional | 99.52 | |
| PRK06048 | 561 | acetolactate synthase 3 catalytic subunit; Reviewe | 99.52 | |
| TIGR03394 | 535 | indol_phenyl_DC indolepyruvate/phenylpyruvate deca | 99.5 | |
| PRK09259 | 569 | putative oxalyl-CoA decarboxylase; Validated | 99.5 | |
| PRK08978 | 548 | acetolactate synthase 2 catalytic subunit; Reviewe | 99.5 | |
| PRK11869 | 280 | 2-oxoacid ferredoxin oxidoreductase subunit beta; | 99.48 | |
| PRK07449 | 568 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1 | 99.47 | |
| PRK06276 | 586 | acetolactate synthase catalytic subunit; Reviewed | 99.47 | |
| PRK07789 | 612 | acetolactate synthase 1 catalytic subunit; Validat | 99.46 | |
| PRK07282 | 566 | acetolactate synthase catalytic subunit; Reviewed | 99.46 | |
| PRK11866 | 279 | 2-oxoacid ferredoxin oxidoreductase subunit beta; | 99.44 | |
| PRK11867 | 286 | 2-oxoglutarate ferredoxin oxidoreductase subunit b | 99.43 | |
| TIGR02177 | 287 | PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta | 99.41 | |
| TIGR03336 | 595 | IOR_alpha indolepyruvate ferredoxin oxidoreductase | 99.37 | |
| PRK11865 | 299 | pyruvate ferredoxin oxidoreductase subunit beta; P | 99.31 | |
| COG3961 | 557 | Pyruvate decarboxylase and related thiamine pyroph | 99.31 | |
| PLN02980 | 1655 | 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi | 99.23 | |
| KOG1185 | 571 | consensus Thiamine pyrophosphate-requiring enzyme | 99.19 | |
| COG3960 | 592 | Glyoxylate carboligase [General function predictio | 98.94 | |
| KOG4166 | 675 | consensus Thiamine pyrophosphate-requiring enzyme | 98.92 | |
| KOG1184 | 561 | consensus Thiamine pyrophosphate-requiring enzyme | 98.87 | |
| PF09364 | 379 | XFP_N: XFP N-terminal domain; InterPro: IPR018970 | 98.87 | |
| COG3962 | 617 | Acetolactate synthase [Amino acid transport and me | 98.71 | |
| COG1013 | 294 | PorB Pyruvate:ferredoxin oxidoreductase and relate | 98.54 | |
| COG4231 | 640 | Indolepyruvate ferredoxin oxidoreductase, alpha an | 98.14 | |
| COG3957 | 793 | Phosphoketolase [Carbohydrate transport and metabo | 98.1 | |
| COG1165 | 566 | MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-car | 97.78 | |
| cd03377 | 365 | TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), | 97.42 | |
| cd06586 | 154 | TPP_enzyme_PYR Pyrimidine (PYR) binding domain of | 97.06 | |
| PRK13030 | 1159 | 2-oxoacid ferredoxin oxidoreductase; Provisional | 97.04 | |
| PRK09193 | 1165 | indolepyruvate ferredoxin oxidoreductase; Validate | 97.02 | |
| cd07039 | 164 | TPP_PYR_POX Pyrimidine (PYR) binding domain of POX | 97.0 | |
| cd07035 | 155 | TPP_PYR_POX_like Pyrimidine (PYR) binding domain o | 96.93 | |
| cd07034 | 160 | TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) bindi | 96.7 | |
| PF02776 | 172 | TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-ter | 96.68 | |
| TIGR03845 | 157 | sulfopyru_alph sulfopyruvate decarboxylase, alpha | 96.66 | |
| cd07038 | 162 | TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding dom | 96.51 | |
| TIGR02176 | 1165 | pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxid | 96.42 | |
| PRK13029 | 1186 | 2-oxoacid ferredoxin oxidoreductase; Provisional | 96.37 | |
| cd07037 | 162 | TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2- | 95.82 | |
| COG0028 | 550 | IlvB Thiamine pyrophosphate-requiring enzymes [ace | 95.01 | |
| TIGR03254 | 554 | oxalate_oxc oxalyl-CoA decarboxylase. In a number | 94.99 | |
| PRK08611 | 576 | pyruvate oxidase; Provisional | 94.97 | |
| PRK07119 | 352 | 2-ketoisovalerate ferredoxin reductase; Validated | 94.9 | |
| PRK08659 | 376 | 2-oxoglutarate ferredoxin oxidoreductase subunit a | 94.86 | |
| PRK07525 | 588 | sulfoacetaldehyde acetyltransferase; Validated | 94.7 | |
| PRK07524 | 535 | hypothetical protein; Provisional | 94.61 | |
| PRK09259 | 569 | putative oxalyl-CoA decarboxylase; Validated | 94.5 | |
| PRK06457 | 549 | pyruvate dehydrogenase; Provisional | 94.38 | |
| PRK07064 | 544 | hypothetical protein; Provisional | 94.36 | |
| TIGR03457 | 579 | sulphoacet_xsc sulfoacetaldehyde acetyltransferase | 94.26 | |
| PRK07979 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 94.24 | |
| TIGR03297 | 361 | Ppyr-DeCO2ase phosphonopyruvate decarboxylase. Thi | 94.22 | |
| PRK08266 | 542 | hypothetical protein; Provisional | 94.19 | |
| PRK11269 | 591 | glyoxylate carboligase; Provisional | 94.07 | |
| PRK06112 | 578 | acetolactate synthase catalytic subunit; Validated | 94.03 | |
| PRK06456 | 572 | acetolactate synthase catalytic subunit; Reviewed | 94.02 | |
| PRK08273 | 597 | thiamine pyrophosphate protein; Provisional | 93.97 | |
| PRK07418 | 616 | acetolactate synthase 3 catalytic subunit; Reviewe | 93.97 | |
| PRK06276 | 586 | acetolactate synthase catalytic subunit; Reviewed | 93.92 | |
| PRK06466 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 93.91 | |
| PRK06725 | 570 | acetolactate synthase 3 catalytic subunit; Validat | 93.9 | |
| PRK07586 | 514 | hypothetical protein; Validated | 93.85 | |
| TIGR01504 | 588 | glyox_carbo_lig glyoxylate carboligase. Glyoxylate | 93.82 | |
| PRK08366 | 390 | vorA 2-ketoisovalerate ferredoxin oxidoreductase s | 93.81 | |
| PLN02470 | 585 | acetolactate synthase | 93.81 | |
| PF01855 | 230 | POR_N: Pyruvate flavodoxin/ferredoxin oxidoreducta | 93.77 | |
| cd07033 | 156 | TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domai | 93.68 | |
| PRK08322 | 547 | acetolactate synthase; Reviewed | 93.65 | |
| PRK07789 | 612 | acetolactate synthase 1 catalytic subunit; Validat | 93.63 | |
| PRK08978 | 548 | acetolactate synthase 2 catalytic subunit; Reviewe | 93.57 | |
| TIGR00118 | 558 | acolac_lg acetolactate synthase, large subunit, bi | 93.5 | |
| PRK07710 | 571 | acetolactate synthase catalytic subunit; Reviewed | 93.45 | |
| PRK12474 | 518 | hypothetical protein; Provisional | 93.43 | |
| PRK09107 | 595 | acetolactate synthase 3 catalytic subunit; Validat | 93.27 | |
| PRK08979 | 572 | acetolactate synthase 3 catalytic subunit; Validat | 93.24 | |
| PRK06882 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 93.24 | |
| PRK08199 | 557 | thiamine pyrophosphate protein; Validated | 93.24 | |
| TIGR03394 | 535 | indol_phenyl_DC indolepyruvate/phenylpyruvate deca | 93.16 | |
| PRK06965 | 587 | acetolactate synthase 3 catalytic subunit; Validat | 93.14 | |
| PRK08155 | 564 | acetolactate synthase catalytic subunit; Validated | 93.09 | |
| PRK05858 | 542 | hypothetical protein; Provisional | 92.63 | |
| PRK07282 | 566 | acetolactate synthase catalytic subunit; Reviewed | 92.59 | |
| PRK08327 | 569 | acetolactate synthase catalytic subunit; Validated | 92.49 | |
| TIGR02720 | 575 | pyruv_oxi_spxB pyruvate oxidase. Members of this f | 92.46 | |
| PRK09627 | 375 | oorA 2-oxoglutarate-acceptor oxidoreductase subuni | 92.44 | |
| KOG4166 | 675 | consensus Thiamine pyrophosphate-requiring enzyme | 92.39 | |
| cd07036 | 167 | TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding | 92.26 | |
| PRK06048 | 561 | acetolactate synthase 3 catalytic subunit; Reviewe | 92.21 | |
| PRK08617 | 552 | acetolactate synthase; Reviewed | 92.21 | |
| TIGR02418 | 539 | acolac_catab acetolactate synthase, catabolic. Ace | 92.02 | |
| TIGR03710 | 562 | OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha s | 92.0 | |
| PF02779 | 178 | Transket_pyr: Transketolase, pyrimidine binding do | 91.88 | |
| PRK08367 | 394 | porA pyruvate ferredoxin oxidoreductase subunit al | 91.84 | |
| PLN02573 | 578 | pyruvate decarboxylase | 91.77 | |
| PRK08527 | 563 | acetolactate synthase 3 catalytic subunit; Validat | 91.74 | |
| PRK09622 | 407 | porA pyruvate flavodoxin oxidoreductase subunit al | 91.57 | |
| CHL00099 | 585 | ilvB acetohydroxyacid synthase large subunit | 91.47 | |
| PRK09124 | 574 | pyruvate dehydrogenase; Provisional | 91.37 | |
| TIGR00204 | 617 | dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP s | 91.3 | |
| PRK07092 | 530 | benzoylformate decarboxylase; Reviewed | 90.94 | |
| PRK06154 | 565 | hypothetical protein; Provisional | 90.69 | |
| TIGR00173 | 432 | menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohex | 90.56 | |
| PRK06546 | 578 | pyruvate dehydrogenase; Provisional | 90.33 | |
| TIGR00232 | 653 | tktlase_bact transketolase, bacterial and yeast. T | 89.4 | |
| cd01460 | 266 | vWA_midasin VWA_Midasin: Midasin is a member of th | 89.3 | |
| PLN02683 | 356 | pyruvate dehydrogenase E1 component subunit beta | 89.25 | |
| PRK11892 | 464 | pyruvate dehydrogenase subunit beta; Provisional | 88.76 | |
| PRK05444 | 580 | 1-deoxy-D-xylulose-5-phosphate synthase; Provision | 88.39 | |
| PRK05899 | 624 | transketolase; Reviewed | 88.29 | |
| PRK12571 | 641 | 1-deoxy-D-xylulose-5-phosphate synthase; Provision | 88.26 | |
| PTZ00089 | 661 | transketolase; Provisional | 88.01 | |
| PLN02234 | 641 | 1-deoxy-D-xylulose-5-phosphate synthase | 87.74 | |
| TIGR03336 | 595 | IOR_alpha indolepyruvate ferredoxin oxidoreductase | 87.68 | |
| PLN02582 | 677 | 1-deoxy-D-xylulose-5-phosphate synthase | 86.52 | |
| PLN02980 | 1655 | 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi | 86.37 | |
| COG0674 | 365 | PorA Pyruvate:ferredoxin oxidoreductase and relate | 86.35 | |
| PLN02225 | 701 | 1-deoxy-D-xylulose-5-phosphate synthase | 86.23 | |
| PRK12315 | 581 | 1-deoxy-D-xylulose-5-phosphate synthase; Provision | 85.31 | |
| COG0021 | 663 | TktA Transketolase [Carbohydrate transport and met | 84.52 | |
| COG4032 | 172 | Predicted thiamine-pyrophosphate-binding protein [ | 84.02 | |
| PRK12753 | 663 | transketolase; Reviewed | 84.01 | |
| PTZ00182 | 355 | 3-methyl-2-oxobutanate dehydrogenase; Provisional | 83.71 | |
| PLN02790 | 654 | transketolase | 83.58 | |
| PRK09212 | 327 | pyruvate dehydrogenase subunit beta; Validated | 83.34 | |
| PRK12754 | 663 | transketolase; Reviewed | 80.88 |
| >COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-93 Score=688.16 Aligned_cols=351 Identities=38% Similarity=0.656 Sum_probs=337.0
Q ss_pred CeeEEeCCCCCCCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-cccccchhhHHHHHHHhcCCCC-c
Q 016903 13 PCYRVLDDDGQPFPDSSFV--KVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRIS-FYLTTSGEEAINIASAAAIKND-D 88 (380)
Q Consensus 13 ~~~~~~~~~g~~~~~~~~~--~~~~e~l~~~y~~M~~~R~~e~~~~~~~~~g~i~-~~~~~~G~Ea~~~~~~~~l~~~-D 88 (380)
+.+++++.+|..+.+.... .+++++++++|++|+++|.||+++..++++|+++ |+|+++||||+++|++.+|+++ |
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~y~~M~l~R~fd~k~~~l~r~G~i~gf~~~~~GqEA~~vg~~~aL~~~~D 81 (358)
T COG1071 2 SLIRVLDEDGRAVDELPGPNAALSKEELLELYRLMLLIRRFDEKMLQLQRQGKIGGFYHLYIGQEAVQVGAAAALRPGED 81 (358)
T ss_pred CceeccCcccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCcCCcccHHHHHHHHHHhcCCCCC
Confidence 5689999999988886444 7999999999999999999999999999999996 9999999999999999999966 9
Q ss_pred EEEcccccHHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCccccCcccccchHHHHHHHHHhhhcCCCC-e
Q 016903 89 FVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDA-C 167 (380)
Q Consensus 89 ~v~~~yR~~~~~l~~G~~~~~~~~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~-~ 167 (380)
|++++||+|+++|++|+++.++|++++|+.+|+|+|+++++|++++..++++.++++|+|+|+|+|+|+|.|+++.+. +
T Consensus 82 ~i~~~YR~h~~~l~~G~~~~~~~a~~~G~~~g~~kGr~~~~h~~~~~~~~~~~~~iVg~Q~~~AaG~A~a~k~~~~~~~V 161 (358)
T COG1071 82 WIFPTYRDHGHLLARGVPLKEIMAELLGKATGPCKGRGGSMHYSDKEKGFLGGSGIVGTQIPLAAGAALALKYRGTKDGV 161 (358)
T ss_pred EeecccCccccceecCCCHHHHHHHHhccccCCCCCCCCcccccccccccCCCCceecccccHHHHHHHHHHHhCCCCcE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999555 9
Q ss_pred eEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHH
Q 016903 168 AVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVH 247 (380)
Q Consensus 168 vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~ 247 (380)
++|++|||+++||.|||+||||+.|+|||||+|+||+|+||++...+...+.++.++.+||+|+++|||+|+.+||++++
T Consensus 162 a~~~~GDGat~qG~FhEalN~A~v~klPvvf~ieNN~yAiSvp~~~q~~~~~~~~ra~aygipgv~VDG~D~~avy~~~~ 241 (358)
T COG1071 162 AVAFFGDGATNQGDFHEALNFAAVWKLPVVFVIENNQYAISVPRSRQTAAEIIAARAAAYGIPGVRVDGNDVLAVYEAAK 241 (358)
T ss_pred EEEEecCCccccchHHHHHHHHHHhcCCEEEEEecCCceeecchhhcccchhHHhhhhccCCCeEEECCcCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888777776677789999999999999999999999999
Q ss_pred HHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChhhHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 016903 248 AAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQIL 327 (380)
Q Consensus 248 ~a~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~e~~~i~~~~~~~v~ 327 (380)
+|+++||+++||+|||+.|||++|||++|||..||+++|++.|+ .+|||.+++++|++.|+||++++++|+++++++|+
T Consensus 242 ~A~e~AR~g~GPtLIE~~tYR~~~HS~sDd~~~YRskeE~~~~~-~~DPi~r~~~~L~~~g~~see~~~~i~~e~~~~V~ 320 (358)
T COG1071 242 EAVERARAGEGPTLIEAVTYRYGGHSTSDDPSKYRSKEEVEEWK-KRDPIVRLRKYLIEAGILSEEELEAIEAEAKAEVD 320 (358)
T ss_pred HHHHHHHcCCCCEEEEEEEeecCCCCCCCCccccCCHHHHHHHh-ccChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998 59999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCccccccccCCCccHHHHHHHHH
Q 016903 328 HALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLR 364 (380)
Q Consensus 328 ~a~~~a~~~p~p~~~~~~~~vy~~~~~~~~~~~~~l~ 364 (380)
+|+++|+++|.|+++++|++||++.|+.+.+|++.+.
T Consensus 321 ea~e~a~~~p~P~~~~~~~~Vy~~~~~~l~~q~~~~~ 357 (358)
T COG1071 321 EAVEFAEASPYPDVSELFEDVYAEGPPHLEEQREELE 357 (358)
T ss_pred HHHHHHHhCCCCChhHhhhcccccCChhHHHHHHhhc
Confidence 9999999999999999999999999999999987764
|
|
| >KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-84 Score=604.42 Aligned_cols=379 Identities=64% Similarity=1.081 Sum_probs=370.5
Q ss_pred CccccCCCCCCCCeeEEeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhhHHHHHH
Q 016903 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIAS 80 (380)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~e~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~G~Ea~~~~~ 80 (380)
|+||.+++...+|.|||+|.||.+++++..+.++.+..++||++|++...+|..+.+.+|||+|+||+++.|+||+-+|.
T Consensus 51 l~fI~~~d~~~iPiYRV~d~~G~ii~~sqdp~~~ee~~~kmy~~M~~Ln~MD~IlYesQRQGRiSFYmT~~GEEa~higS 130 (432)
T KOG1182|consen 51 LEFIQPSDTPRIPIYRVMDADGQIIDKSQDPQLSEEVVLKMYKDMTLLNIMDRILYESQRQGRISFYMTNFGEEAIHIGS 130 (432)
T ss_pred eeecCcccCCCCceEEEecCCCcccCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhcceEEEEEeccchhhhhhhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCcEEEcccccHHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCccccCcccccchHHHHHHHHHhh
Q 016903 81 AAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALK 160 (380)
Q Consensus 81 ~~~l~~~D~v~~~yR~~~~~l~~G~~~~~~~~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k 160 (380)
++||.+.|+|++.||..|+++.||+++++++.+.+|+..+..+|++||+|+++++.|++..++++..++|.|+|+|+|.|
T Consensus 131 AAAL~p~Dli~gQYREaGVLlwRgftle~f~~qCyGn~~d~gkGrQMPvHyGs~elnf~tissplatqlpqAvGaaYa~k 210 (432)
T KOG1182|consen 131 AAALEPQDLIYGQYREAGVLLWRGFTLEEFMNQCYGNKSDLGKGRQMPVHYGSKELNFVTISSPLATQLPQAVGAAYALK 210 (432)
T ss_pred hhhCCcccccccccccCceEEEcCccHHHHHHHhcCCccccccccccccccCccccceEEecchhhhccchhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCC-CeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCCCH
Q 016903 161 MDRKD-ACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDA 239 (380)
Q Consensus 161 ~~~~~-~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~ 239 (380)
+++.+ ..+||++|||+.+||.+|.++|+|+..+.|+||+|-||+|+||||++++.....++.++.+||+..++|||||+
T Consensus 211 ~~~~nnac~V~yfGdG~aSEGD~HA~~NfAAtle~Pvif~CRNNG~AISTptseQyr~DGIa~kG~aYGi~sIRVDGnD~ 290 (432)
T KOG1182|consen 211 MRKKNNACAVTYFGDGAASEGDAHAAFNFAATLECPVIFFCRNNGWAISTPTSEQYRGDGIAVKGPAYGIRSIRVDGNDA 290 (432)
T ss_pred hcccCCeEEEEEecCCcccccchhhhhhHHHHhCCCEEEEEcCCCeeeccccHHHhcCCceEEeccccceEEEEecCcch
Confidence 87665 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChhhHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHH
Q 016903 240 LAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELR 319 (380)
Q Consensus 240 ~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~e~~~i~ 319 (380)
.+||.|+++|.+.+-...+|+|||+.|||.++||+|||.+.||+.+|++-|.+.++||.|||+++.++|+|+|+...+++
T Consensus 291 lAvYnA~k~ARe~av~e~rPvliEamtYRvGHHSTSDDSt~YRsadEiq~W~~~~~pisrfr~~i~~~GWw~ee~E~~~r 370 (432)
T KOG1182|consen 291 LAVYNAVKEAREMAVTEQRPVLIEAMTYRVGHHSTSDDSTAYRSADEIQYWNKSRHPISRFRKYIESNGWWSEEDESELR 370 (432)
T ss_pred HHHHHHHHHHHHHHHhccCchhhhhhhhhhccccCCCccccccchhhhhhhhcccCcHHHHHHHHHhcCCcChhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999987899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCccccccccCCCccHHHHHHHHHHHHHhCCCCCCCCCC
Q 016903 320 SSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYPSNVP 379 (380)
Q Consensus 320 ~~~~~~v~~a~~~a~~~p~p~~~~~~~~vy~~~~~~~~~~~~~l~~~~~~~p~~~~~~~~ 379 (380)
++++++|.++++.|++-++|.+.++|+|||.++|.+|++|...|++.+++||++||+..|
T Consensus 371 k~~rk~vl~a~~~aEk~~K~~~~~lF~dVYd~~P~~L~eq~~~l~~~i~~~~e~Yp~~~~ 430 (432)
T KOG1182|consen 371 KNIRKKVLEAIAAAEKKEKPNLTELFEDVYDEMPKNLREQELELKEHIEKHPEHYPLKDF 430 (432)
T ss_pred HHHHHHHHHHHHHHhcccCCCHHHHHHHHhhhhhHhHHHHHHHHHHHHHhCcccCchhhc
Confidence 999999999999999999999999999999999999999999999999999999996543
|
|
| >PLN02269 Pyruvate dehydrogenase E1 component subunit alpha | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-81 Score=614.54 Aligned_cols=319 Identities=29% Similarity=0.477 Sum_probs=307.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccccccchhhHHHHHHHhcCCCCcEEEcccccHHHHHHcCCCHHH
Q 016903 31 VKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQE 109 (380)
Q Consensus 31 ~~~~~e~l~~~y~~M~~~R~~e~~~~~~~~~g~i-~~~~~~~G~Ea~~~~~~~~l~~~D~v~~~yR~~~~~l~~G~~~~~ 109 (380)
..+++++++++|+.|+++|.||+++..++++|++ +|+|+++||||+++|++.+|+++||++++||+|+++|++|+++.+
T Consensus 25 ~~~~~~~ll~~yr~M~~~R~~e~~~~~l~~~g~i~g~~~~~~GqEA~~vg~~~aL~~~D~~~~~yR~hg~~la~G~~~~~ 104 (362)
T PLN02269 25 VETSKQELVDFFRDMYLMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAITKEDAIITAYRDHCTHLGRGGTVLE 104 (362)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhcCCCCEEEechhhHHHHHHcCCCHHH
Confidence 4789999999999999999999999999999999 699999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCCCCCccccCCCCCCccccCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHH
Q 016903 110 FANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFS 189 (380)
Q Consensus 110 ~~~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A 189 (380)
+|+|++|+.+|+|+|+++++|+.+++.|+++.++++|+++|+|+|+|+|.|+++.+.+++|++|||+++||.|||+||+|
T Consensus 105 ~~ae~~g~~~g~~~GrggsmH~~~~~~~~~~~~~~vG~~~p~A~G~A~A~k~~~~~~v~v~~~GDGa~~eG~~~Ealn~A 184 (362)
T PLN02269 105 VFAELMGRKDGCSRGKGGSMHFYKKDANFYGGHGIVGAQVPLGAGLAFAQKYNKEENVAFALYGDGAANQGQLFEALNIA 184 (362)
T ss_pred HHHHHcCCCCCCCCCCCCcccccchhcCccccCchhhccccHHHHHHHHHHHhCCCCeEEEEECCCCcccCHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 016903 190 AVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 269 (380)
Q Consensus 190 ~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~ 269 (380)
+.|+||+||||+||+|+++++...+....++++++ +++|+++|||+|+.+|+++++.|++++|+ +||+|||++|||+
T Consensus 185 ~~~~lPvvfvveNN~~aist~~~~~~~~~~~~~~~--~~~p~~~VDG~D~~av~~a~~~A~~~aR~-~gP~lIe~~tyR~ 261 (362)
T PLN02269 185 ALWDLPVIFVCENNHYGMGTAEWRAAKSPAYYKRG--DYVPGLKVDGMDVLAVKQACKFAKEHALS-NGPIVLEMDTYRY 261 (362)
T ss_pred hccCcCEEEEEeCCCEeccCchhhhccchHHHHhh--cCCCeEEECCCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCcC
Confidence 99999999999999999999988887777777654 68999999999999999999999999999 9999999999999
Q ss_pred CCCCCCCCCCCCCChhhHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccccc
Q 016903 270 GHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVY 349 (380)
Q Consensus 270 ~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~e~~~i~~~~~~~v~~a~~~a~~~p~p~~~~~~~~vy 349 (380)
+|||++|++..||+++|++.|++.+|||.+|+++|+++|+||++++++|+++++++|++++++|+++|.|+++++|+|||
T Consensus 262 ~gHs~~D~~~~YR~~~E~~~~~~~~DPi~~~~~~L~~~g~~te~e~~~i~~e~~~~v~~a~~~A~~~p~P~~~~~~~~vy 341 (362)
T PLN02269 262 HGHSMSDPGSTYRTRDEISGVRQERDPIERVRKLLLAHELATEAELKDIEKEIRKEVDDAVAKAKESPMPDPSELFTNVY 341 (362)
T ss_pred CCcCCCCCCcccCCHHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhcc
Confidence 99999998789999999999974599999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 016903 350 DVS 352 (380)
Q Consensus 350 ~~~ 352 (380)
+++
T Consensus 342 ~~~ 344 (362)
T PLN02269 342 VKG 344 (362)
T ss_pred cCC
Confidence 965
|
|
| >CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-80 Score=604.33 Aligned_cols=321 Identities=27% Similarity=0.435 Sum_probs=309.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccccccchhhHHHHHHHhcCCCCcEEEcccccHHHHHHcCCCH
Q 016903 29 SFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSM 107 (380)
Q Consensus 29 ~~~~~~~e~l~~~y~~M~~~R~~e~~~~~~~~~g~i-~~~~~~~G~Ea~~~~~~~~l~~~D~v~~~yR~~~~~l~~G~~~ 107 (380)
..+.+|+++++++|+.|+++|.||+++.+++++|++ +|+|+++||||+++|++.+|+++|+++++||+|+++|++|+++
T Consensus 13 ~~~~~~~~~ll~~y~~M~~~R~~e~~~~~~~~~g~i~g~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~la~G~~~ 92 (341)
T CHL00149 13 NENNINSMWLLVLYEDMLLGRNFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGVIKLLAETDYVCSTYRDHVHALSKGVPP 92 (341)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhCCCCCEEEcccccHHHHHHcCCCH
Confidence 456799999999999999999999999999999999 6999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCCCCCccccCCCCCCccccCcccccchHHHHHHHHHhhhcC-------CCCeeEEEeCccccCcc
Q 016903 108 QEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDR-------KDACAVTYFGDGGTSEG 180 (380)
Q Consensus 108 ~~~~~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~-------~~~~vv~~~GDG~~~eG 180 (380)
.++|++++|+.+|+|+|+++++|+.+++.++++.+|+||.++|+|+|+|+|.|+++ ++++|+|++|||++++|
T Consensus 93 ~~~~ae~~g~~~g~~~Gr~gs~H~~~~~~~~~~~~g~lG~~lp~AvGaa~A~k~~~~~~~~~~~~~vvv~~~GDGa~~~G 172 (341)
T CHL00149 93 KNVMAELFGKETGCSRGRGGSMHIFSAPHNFLGGFAFIGEGIPIALGAAFQSIYRQQVLKEVQPLRVTACFFGDGTTNNG 172 (341)
T ss_pred HHHHHHHcCCCCCCCCCCCCCccccchhcCccCCChhhhccHHHHHHHHHHHHHhccccccCCCCCEEEEEeCCchhhhc
Confidence 99999999999999999999999999888999999999999999999999999887 58999999999999999
Q ss_pred hHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcE
Q 016903 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPI 260 (380)
Q Consensus 181 ~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~ 260 (380)
.+||+||+|++|+||+||||+||+|+++++...++...++++++++||+++++|||+|+.+++.++++|++++|++++|+
T Consensus 173 ~~~Ealn~A~~~~LPvifvv~NN~~~i~~~~~~~~~~~d~a~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~ 252 (341)
T CHL00149 173 QFFECLNMAVLWKLPIIFVVENNQWAIGMAHHRSTSIPEIHKKAEAFGLPGIEVDGMDVLAVREVAKEAVERARQGDGPT 252 (341)
T ss_pred HHHHHHHHHhhcCCCEEEEEEeCCeeeecchhheeCCccHHHHHHhCCCCEEEEeCCCHHHHHHHHHHHHHHHHhCCCCE
Confidence 99999999999999999999999999999887777778999999999999999999999999999999999999999999
Q ss_pred EEEEEeecCCCCCCCCCCCCCCChhhHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 016903 261 LIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPP 340 (380)
Q Consensus 261 lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~e~~~i~~~~~~~v~~a~~~a~~~p~p~ 340 (380)
|||+.|||++|||++|+ ..||+++|++.|+ ++|||.+|+++|+++|++|++++++|+++++++|++++++|+++|.|+
T Consensus 253 lIev~tyR~~gHs~~D~-~~YR~~~e~~~~~-~~DPi~~~~~~L~~~g~~~~~~~~~i~~e~~~~v~~a~~~a~~~p~p~ 330 (341)
T CHL00149 253 LIEALTYRFRGHSLADP-DELRSKQEKEAWV-ARDPIKKLKSYIIDNELASQKELNKIQREVKIEIEQAVQFAISSPEPN 330 (341)
T ss_pred EEEEEEecCCCcCCCCC-ccCCCHHHHHHHh-cCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 99999999999999976 5799999999998 699999999999999999999999999999999999999999999999
Q ss_pred CCccccccccC
Q 016903 341 ISDLFTDVYDV 351 (380)
Q Consensus 341 ~~~~~~~vy~~ 351 (380)
++++|+|||++
T Consensus 331 ~~~~~~~vy~~ 341 (341)
T CHL00149 331 ISDLKKYLFAD 341 (341)
T ss_pred HHHHHhhcccC
Confidence 99999999974
|
|
| >TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-79 Score=604.40 Aligned_cols=341 Identities=42% Similarity=0.679 Sum_probs=323.4
Q ss_pred CeeEEeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhhHHHHHHHhcCCCCcEEEc
Q 016903 13 PCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKNDDFVVP 92 (380)
Q Consensus 13 ~~~~~~~~~g~~~~~~~~~~~~~e~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~G~Ea~~~~~~~~l~~~D~v~~ 92 (380)
|.|||+++||.+.++.-.+.+++++++++|++|+++|.||+++..++++|+++|+|+++||||+++|++.+|+++|++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~m~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~vg~~~al~~~D~~~~ 80 (341)
T TIGR03181 1 ELVQVLDEDGNVVDPEPAPDLSDEELVELYRDMVLTRRFDTKALALQRQGRLGTYAPNLGQEAAQVGSALALRKDDWVFP 80 (341)
T ss_pred CceEEECCCCCcCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCceecccCCCChHHHHHHHHHHcCCCCEEEc
Confidence 67999999998766543467999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCccccCcccccchHHHHHHHHHhhhcCCCCeeEEEe
Q 016903 93 QYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYF 172 (380)
Q Consensus 93 ~yR~~~~~l~~G~~~~~~~~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~ 172 (380)
+||+|+++|++|+++.++|++++|+.+|. + .++..|+++.+++||.++|.|+|+|+|.|+.+++++|+|++
T Consensus 81 ~yR~h~~~l~~G~~~~~~~ae~~g~~~g~--------~-~~~~~~~~g~~~~vG~~lp~AiGaAla~k~~~~~~~vv~~~ 151 (341)
T TIGR03181 81 SYRDHAAMLARGVPLVEILLYWRGDERGS--------W-DPEGVNILPPNIPIGTQYLHAAGVAYALKLRGEDNVAVTYF 151 (341)
T ss_pred chhhHHHHHHcCCCHHHHHHHhcCcCcCC--------C-CchhcCccCCCchHhcchhHHHhHHHHHHhhCCCCEEEEEe
Confidence 99999999999999999999999986542 1 13568999999999999999999999999999999999999
Q ss_pred CccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHH
Q 016903 173 GDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREM 252 (380)
Q Consensus 173 GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ 252 (380)
|||++++|.++|+||+|++|+||+||||+||+|+++++...+...+++++++++||+++++|||+|..+|+++++.|+++
T Consensus 152 GDGa~~~g~~~EaL~tA~~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~ 231 (341)
T TIGR03181 152 GDGGTSEGDFYEALNFAGVFKAPVVFFVQNNQWAISVPRSKQTAAPTLAQKAIAYGIPGVQVDGNDVLAVYAVTKEAVER 231 (341)
T ss_pred cCCccccChHHHHHHHHhccCCCEEEEEECCCCccccchhhhhCCcCHHHHHhhCCCCEEEECCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988777667789999999999999999999999999999999999
Q ss_pred hhccCCcEEEEEEeecCCCCCCCCCCCCCCChhhHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 016903 253 AIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQE 332 (380)
Q Consensus 253 ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~e~~~i~~~~~~~v~~a~~~ 332 (380)
+|++++|+||++.|||++|||++|++..||+++|++.|+ ++|||.+|+++|+++|++|++++++|+++++++|++++++
T Consensus 232 a~~~~gP~lIev~t~R~~gH~~~D~~~~YR~~~e~~~~~-~~Dpi~~~~~~L~~~g~~~~~e~~~i~~~~~~~v~~a~~~ 310 (341)
T TIGR03181 232 ARSGGGPTLIEAVTYRLGPHTTADDPTRYRTKEEEEEWR-KKDPILRLRKYLERKGLWDEEQEEALEEEAEAEVAEAVAE 310 (341)
T ss_pred HHcCCCCEEEEEEeecCCCCCCCCCCccCCCHHHHHHHh-cCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998999999999998 5999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCCccccccccCCCccHHHHHHHH
Q 016903 333 AEKAEKPPISDLFTDVYDVSPSNLREQEHSL 363 (380)
Q Consensus 333 a~~~p~p~~~~~~~~vy~~~~~~~~~~~~~l 363 (380)
|+++|.|+++++|+|||+++||++++|++.|
T Consensus 311 a~~~p~P~~~~~~~~vy~~~~~~~~~~~~~~ 341 (341)
T TIGR03181 311 ALALPPPPVDDIFDHVYAELPPELEEQRAEL 341 (341)
T ss_pred HHhCCCCCHHHHHhhcccCCCHHHHHHHHhC
Confidence 9999999999999999999999999998764
|
Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc. |
| >TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-79 Score=592.59 Aligned_cols=314 Identities=31% Similarity=0.541 Sum_probs=305.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccccccchhhHHHHHHHhcCCCCcEEEcccccHHHHHHcCCCHHHHHHH
Q 016903 35 EGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQ 113 (380)
Q Consensus 35 ~e~l~~~y~~M~~~R~~e~~~~~~~~~g~i-~~~~~~~G~Ea~~~~~~~~l~~~D~v~~~yR~~~~~l~~G~~~~~~~~e 113 (380)
+++++++|++|+++|.||+++.+++++|++ +|+|+++||||+++|++.+|+++||++++||+|+++|++|++++++|++
T Consensus 1 ~~~l~~~y~~M~~~R~~d~~~~~l~~~g~~~~~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~la~G~~~~~~~~~ 80 (315)
T TIGR03182 1 KEELLELYRDMLLIRRFEEKAGQLYGMGKIGGFCHLYIGQEAVAVGLIAALKPDDYVITSYRDHGHALARGVPPKEVMAE 80 (315)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCCCCChHHHHHHHHHhCCCCCEEEechhhHHHHHHcCCCHHHHHHH
Confidence 478999999999999999999999999999 5899999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCCCCCCccccCCCCCCccccCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcC
Q 016903 114 CFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTE 193 (380)
Q Consensus 114 ~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~ 193 (380)
++|+.+|+|+|+++++|+.+++.|+++.+|+||+++|+|+|+|+|.|+++++++|||++|||++++|.+||+||+|++++
T Consensus 81 ~~g~~~g~~~Gr~g~~h~~~~~~~~~~~~g~~G~~lp~AiGaa~A~~~~~~~~~vv~~~GDGa~~~g~~~ealn~A~~~~ 160 (315)
T TIGR03182 81 LTGRATGCSKGKGGSMHMFDREKNFYGGHGIVGAQVPLATGLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWK 160 (315)
T ss_pred HcCCCCCCCCCCCCCCCcCchhhCcccCcCcccccccHHHHHHHHHHHhCCCCEEEEEeCCCcccccHHHHHHHHhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCC
Q 016903 194 APVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHT 273 (380)
Q Consensus 194 Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs 273 (380)
||+||||.||+|+++++...+.+.+++++++++||+++++|||+|+.++++++++|++++|++++|+|||+.|||++|||
T Consensus 161 lPvi~vv~NN~yg~s~~~~~~~~~~~~a~~A~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs 240 (315)
T TIGR03182 161 LPVIFVIENNLYAMGTSVERSSSVTDLYKRGESFGIPGERVDGMDVLAVREAAKEAVERARSGKGPILLEMKTYRFRGHS 240 (315)
T ss_pred cCEEEEEEcCCccccCCHHHHhCCcCHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEeCCcCCCCC
Confidence 99999999999999999887777789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCChhhHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccccc
Q 016903 274 TSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYD 350 (380)
Q Consensus 274 ~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~e~~~i~~~~~~~v~~a~~~a~~~p~p~~~~~~~~vy~ 350 (380)
++|++ .||+++|++.|+ ++|||.+|+++|+++|+||++++++|+++++++|++++++|++.|.|+++++|+|||+
T Consensus 241 ~~D~~-~Yr~~~e~~~~~-~~dPi~~~~~~L~~~g~~~~~~~~~~~~~~~~~v~~a~~~a~~~p~p~~~~~~~~vy~ 315 (315)
T TIGR03182 241 MSDPA-KYRSKEEVEEWR-KRDPIEKLKARLIEQGIASEEELKEIDKEVRAEVEEAVEFAENSPEPPVEELYTDVYA 315 (315)
T ss_pred CCCcc-ccCCHHHHHHHH-hcCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhccC
Confidence 99876 799999999998 6999999999999999999999999999999999999999999999999999999996
|
Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc. |
| >PLN02374 pyruvate dehydrogenase (acetyl-transferring) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-77 Score=599.87 Aligned_cols=322 Identities=26% Similarity=0.439 Sum_probs=310.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccccccchhhHHHHHHHhcCCCCcEEEcccccHHHHHHcCCCHH
Q 016903 30 FVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQ 108 (380)
Q Consensus 30 ~~~~~~e~l~~~y~~M~~~R~~e~~~~~~~~~g~i-~~~~~~~G~Ea~~~~~~~~l~~~D~v~~~yR~~~~~l~~G~~~~ 108 (380)
.+.+++++++++|++|+++|.||+++..++++|++ +|+|+++||||+++|++.+|+++||++++||+|+++|++|++++
T Consensus 80 ~~~ls~e~ll~lyr~M~~~R~fEe~~~~l~~~Gki~g~~h~~~GqEA~~vg~~~aL~~~D~v~~~yR~h~~~La~G~~~~ 159 (433)
T PLN02374 80 DLLVTREEGLELYEDMVLGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKDDSVVSTYRDHVHALSKGVPAR 159 (433)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceeccCCCCCcHHHHHHHHHHcCCCCEEEccCcChHHhhhcCCCHH
Confidence 46889999999999999999999999999999999 79999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCCCCCCCccccCCCCCCccccCcccccchHHHHHHHHHhhhcC-------CCCeeEEEeCccccCcch
Q 016903 109 EFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDR-------KDACAVTYFGDGGTSEGD 181 (380)
Q Consensus 109 ~~~~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~-------~~~~vv~~~GDG~~~eG~ 181 (380)
++|+|++|+.+|+|+|+++++|+.+++.++++.+++||.++|+|+|+|+|.|+++ ++++|||++|||++++|.
T Consensus 160 ~~mael~Gk~~g~~~GrggsmH~~~~~~~~~g~~g~lG~~lP~AvGaA~A~k~~~~~~~~~~~~~vvv~~~GDGa~~eG~ 239 (433)
T PLN02374 160 AVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCNNGQ 239 (433)
T ss_pred HHHHHHcCCCCCCCCCCCCcCccCchhhCCCCCceeccCchhHHHHHHHHHHHhhccccccCCCCEEEEEECCCccccCh
Confidence 9999999999999999999999999999999999999999999999999999885 488999999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEE
Q 016903 182 FHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPIL 261 (380)
Q Consensus 182 ~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~l 261 (380)
|||+||+|++|+|||||||+||+|+++++...++..+++++++++||+++++|||+|+.+|++++++|++++|++++|+|
T Consensus 240 f~EaLn~A~~~~LPvIfVV~NN~yaig~~~~~~t~~~dia~~A~a~G~~~~~VDG~D~~av~~a~~~A~~~Ar~g~gP~L 319 (433)
T PLN02374 240 FFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAKEAIERARRGEGPTL 319 (433)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCCEeecceeeeccCCCCHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999999999999999998887777789999999999999999999999999999999999999999999
Q ss_pred EEEEeecCCCCCCCCCCCCCCChhhHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 016903 262 IEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPI 341 (380)
Q Consensus 262 Ie~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~e~~~i~~~~~~~v~~a~~~a~~~p~p~~ 341 (380)
||+.|||++|||++|++ .||+++|++.|+ ++|||.+++++|+++|++|++++++|+++++++|++++++|+++|.|++
T Consensus 320 Ie~~tyR~~GHs~~D~~-~YR~~~e~~~~~-~~DPi~~~~~~L~~~gi~te~e~~~i~~~~~~~v~~a~~~A~~~p~P~~ 397 (433)
T PLN02374 320 VECETYRFRGHSLADPD-ELRDPAEKAHYA-ARDPIAALKKYLIENGLATEAELKAIEKKIDEVVEDAVEFADASPLPPR 397 (433)
T ss_pred EEEEEEecCCcCCCCcc-ccCCHHHHHHHH-cCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCH
Confidence 99999999999999865 699999999998 6999999999999999999999999999999999999999999999999
Q ss_pred CccccccccCCC
Q 016903 342 SDLFTDVYDVSP 353 (380)
Q Consensus 342 ~~~~~~vy~~~~ 353 (380)
+++|++||+++.
T Consensus 398 ~~~~~~vy~~~~ 409 (433)
T PLN02374 398 SQLLENVFADPK 409 (433)
T ss_pred HHHHhccccCCc
Confidence 999999999763
|
|
| >KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-78 Score=565.14 Aligned_cols=322 Identities=30% Similarity=0.504 Sum_probs=310.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccccccchhhHHHHHHHhcCCCCcEEEcccccHHHHHHcCCCH
Q 016903 29 SFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSM 107 (380)
Q Consensus 29 ~~~~~~~e~l~~~y~~M~~~R~~e~~~~~~~~~g~i-~~~~~~~G~Ea~~~~~~~~l~~~D~v~~~yR~~~~~l~~G~~~ 107 (380)
....+++++++++|++|+++|.+|..+..+|++++| +|+|++.||||+++|+-+++.+.|.++++||+|++.+.+|.++
T Consensus 52 ~s~~~t~ee~L~~Y~~M~~~RrmE~aad~lYK~k~IRGFCHLy~GQEAvavGme~ait~~D~iItsYR~Hg~~~~~G~S~ 131 (394)
T KOG0225|consen 52 TSVELTKEEALKYYRDMQTIRRMELAADQLYKAKKIRGFCHLYDGQEAVAVGMEAAITKSDSIITSYRCHGWTYLRGVSV 131 (394)
T ss_pred ceEEecHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhceeeeecccHHHHHHHHHHhccCCCceEEEeeeeeEEeecCccH
Confidence 345689999999999999999999999999999999 6999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCCCCCccccCCCCCCccccCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHH
Q 016903 108 QEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALN 187 (380)
Q Consensus 108 ~~~~~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~ 187 (380)
.++|+|++|+.+|+|+|.|++||+..+ +|++.+|++|.|+|++.|+|+|.|+++.+.+++++.|||+.+||+++|++|
T Consensus 132 ~~v~aEL~Gr~~Gc~kGKGGSMHmy~k--~FyGGnGIVGAQiPLGaGia~A~kY~~~~~v~~alYGDGAaNQGQ~fEa~N 209 (394)
T KOG0225|consen 132 REVLAELMGRQAGCSKGKGGSMHMYAK--NFYGGNGIVGAQIPLGAGIAFAQKYNREDAVCFALYGDGAANQGQVFEAFN 209 (394)
T ss_pred HHHHHHHhccccccccCCCcceeeecc--cccCccceeccCCCccccHHHHHHhccCCceEEEEeccccccchhHHHHhh
Confidence 999999999999999999999999864 599999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016903 188 FSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 188 ~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~ 267 (380)
+|+.|+||+||||+||.|++.|+..+....+++.++. .| +|+++|||+|+.+|++|.+.|.+++++++||+++|+.||
T Consensus 210 MA~LW~LP~IFvCENN~yGMGTs~~Rasa~teyykRG-~y-iPGl~VdGmdvlaVr~a~KfA~~~~~~g~GPilmE~~TY 287 (394)
T KOG0225|consen 210 MAALWKLPVIFVCENNHYGMGTSAERASASTEYYKRG-DY-IPGLKVDGMDVLAVREATKFAKKYALEGKGPILMEMDTY 287 (394)
T ss_pred HHHHhCCCEEEEEccCCCccCcchhhhhcChHHHhcc-CC-CCceEECCcchhhHHHHHHHHHHHHhcCCCCEEEEEeee
Confidence 9999999999999999999999999999899999999 45 999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCChhhHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccc
Q 016903 268 RVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTD 347 (380)
Q Consensus 268 R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~e~~~i~~~~~~~v~~a~~~a~~~p~p~~~~~~~~ 347 (380)
|++|||.+|+...||+.||++..+.++|||..++++|++.++.|++|+++|+++++++|++++++|+++|.|++++|+.|
T Consensus 288 Ry~GHSmSDPg~sYRtReEiq~vR~kRDPI~~lk~~li~~~late~ELKai~k~irkeVdeav~~A~~~p~p~~~eL~~d 367 (394)
T KOG0225|consen 288 RYHGHSMSDPGTSYRTREEIQEVRQKRDPIEGLKKRLIELGLATEEELKAIDKEIRKEVDEAVAFATASPEPEPSELFTD 367 (394)
T ss_pred eecccccCCCCcccchHHHHHHHHhccChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHH
Confidence 99999999987999999999999878999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCc
Q 016903 348 VYDVSPS 354 (380)
Q Consensus 348 vy~~~~~ 354 (380)
||...+.
T Consensus 368 vy~~~~~ 374 (394)
T KOG0225|consen 368 VYVKGTG 374 (394)
T ss_pred hhccCCC
Confidence 9997643
|
|
| >PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-73 Score=552.58 Aligned_cols=300 Identities=39% Similarity=0.654 Sum_probs=274.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccccccchhhHHHHHHHhcCCCCcEEEcccccHHHHHHcCCCHHHHHHHhhcCCCCC
Q 016903 42 YNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADY 121 (380)
Q Consensus 42 y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~G~Ea~~~~~~~~l~~~D~v~~~yR~~~~~l~~G~~~~~~~~e~~g~~~~~ 121 (380)
|+.|+..|..|.++..+.++|+.+|+|++.||||++++++.+|+++||++++||+|+++|++|+++.++|++++|+..+.
T Consensus 1 y~~m~~~r~~d~~~~~~~~~~~~g~~~~~~GqEa~~v~~~~~l~~~D~v~~~yR~~~~~la~g~~~~~~~~e~~g~~~g~ 80 (300)
T PF00676_consen 1 YRMMLIRRFEDERARKLQRQGRFGFYHLSAGQEAIQVAAAAALRPGDWVFPYYRDHGHALARGIDLEEIFAELLGKAKGH 80 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSSCTT-TTTCHHHHHHHHHHSCTTSEEEECSTTHHHHHHTTT-HHHHHHHHHTBTTST
T ss_pred CchHHHHHHHHHHHHHHhhCCCeEEecchHHHHHHHHHHHHhccCCCEEEecccchhhhhhccccccchhHHhcCcccCC
Confidence 67777777777777777788888999999999999999999999999999999999999999999999999999999776
Q ss_pred CCCCCCccccCCCCCCccccCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEE
Q 016903 122 GKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICR 201 (380)
Q Consensus 122 ~~G~~~~~H~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~ 201 (380)
+.|+. +.|...+..++++.++++|.++|+|+|+|+|.|+++.+.+++|++|||+++||.|||+||+|+.|+|||||||+
T Consensus 81 ~g~~~-~~~~~~~~~~~~~~~~~vg~~~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lPvifvve 159 (300)
T PF00676_consen 81 GGGRH-PLHFSDKGLNILGASSPVGAQVPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEALNLAALWKLPVIFVVE 159 (300)
T ss_dssp TTTGC-TTEEEBTTTTBEEEESSTTTHHHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEE
T ss_pred CCCcc-ccccccccceeeeccccccccCccccchhHhhhhcCCceeEEEEecCcccccCccHHHHHHHhhccCCeEEEEe
Confidence 66666 68877777889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccccccccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCC
Q 016903 202 NNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKY 281 (380)
Q Consensus 202 NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Y 281 (380)
||+|++|++...+++..+++++|++||+++++|||+|+.+|++++++|++++|+++||+|||++|||++|||++|||..|
T Consensus 160 NN~~aist~~~~~~~~~~~~~~a~~~gip~~~VDG~D~~av~~a~~~A~~~~R~g~gP~lie~~tyR~~gHs~~Dd~~~y 239 (300)
T PF00676_consen 160 NNQYAISTPTEEQTASPDIADRAKGYGIPGIRVDGNDVEAVYEAAKEAVEYARAGKGPVLIEAVTYRLRGHSESDDPTFY 239 (300)
T ss_dssp EESEETTEEHHHHCSSSTSGGGGGGTTSEEEEEETTSHHHHHHHHHHHHHHHHTTT--EEEEEEE--SS-SSTTSCGGGT
T ss_pred cCCcccccCccccccccchhhhhhccCCcEEEECCEeHHHHHHHHHHHHHHHhcCCCCEEEEEeeccCCCCCCCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 016903 282 RPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPIS 342 (380)
Q Consensus 282 r~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~e~~~i~~~~~~~v~~a~~~a~~~p~p~~~ 342 (380)
|+++|++.|++.+|||.+++++|++.|++|++++++|+++++++|++++++|+++|.|+||
T Consensus 240 r~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~e~~~~v~~a~~~a~~~p~p~~e 300 (300)
T PF00676_consen 240 RSPEEYEEWWKKRDPIKRFRRYLIEEGVLTEEELDAIEAEIKAEVEEAVEFAEASPEPDPE 300 (300)
T ss_dssp SHHHHHHHHHHCT-HHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHSHBC-G-
T ss_pred CCHHHHHHHHhcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 9999998887667999999999999999999999999999999999999999999999986
|
Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A .... |
| >cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-72 Score=541.47 Aligned_cols=292 Identities=42% Similarity=0.733 Sum_probs=284.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcc-cccccchhhHHHHHHHhcCCCCcEEEcccccHHHHHHcCCCHHHHHHHhhcCCC
Q 016903 41 MYNDMVTLQTMDTIFYEAQRQGRIS-FYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKA 119 (380)
Q Consensus 41 ~y~~M~~~R~~e~~~~~~~~~g~i~-~~~~~~G~Ea~~~~~~~~l~~~D~v~~~yR~~~~~l~~G~~~~~~~~e~~g~~~ 119 (380)
+|++|+++|.||+++.+++++|++. |+|++.||||+++|++.+|+++|+++++||+|+++|++|+++.++|+|++|+.+
T Consensus 1 ~y~~m~~~R~~e~~~~~~~~~g~~~~~~~~~~GqEa~~vg~~~~l~~~D~~~~~yR~~~~~la~G~~~~~~~~e~~g~~~ 80 (293)
T cd02000 1 LYRTMVLIRRFDERLLELYRQGKIGGFYHLSIGQEAVAVGVAAALRPGDWVFPTYRDHGHALARGVDLKEMLAELFGKET 80 (293)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCccccccCCCCChHHHHHHHHHHCCCCCEEEecchhHHHHHHcCCCHHHHHHHHcCCCC
Confidence 5999999999999999999999997 599999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccccCCCCCCccccCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEE
Q 016903 120 DYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFI 199 (380)
Q Consensus 120 ~~~~G~~~~~H~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~v 199 (380)
|+++|+++++|+.++..++++.+|+||+++|+|+|+|+|.|+.+++++|||++|||++++|.++|+||+|++++||+|||
T Consensus 81 g~~~G~~g~~h~~~~~~~~~~~~g~lG~~~p~a~G~a~a~k~~~~~~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~v 160 (293)
T cd02000 81 GPCKGRGGSMHIGDKEKNFFGGNGIVGGQVPLAAGAALALKYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFV 160 (293)
T ss_pred CCCCCCCCCCCCCchhcCccccccccccchhHHHHHHHHHHHhCCCCEEEEEeCCCccccchHHHHHHHHHhhCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCC
Q 016903 200 CRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDST 279 (380)
Q Consensus 200 v~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~ 279 (380)
|+||+|+++++...+.+.+++++++++||+++++|||+|++++++++++|++++|++++|+|||+.|||.+|||++|||.
T Consensus 161 v~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~~P~lIev~~~r~~gHs~~dd~~ 240 (293)
T cd02000 161 CENNGYAISTPTSRQTAGTSIADRAAAYGIPGIRVDGNDVLAVYEAAKEAVERARAGGGPTLIEAVTYRLGGHSTSDDPS 240 (293)
T ss_pred EeeCCeeccCCHHHHhCCccHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEeccCCCCCCCCcc
Confidence 99999999998877777789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 016903 280 KYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEA 333 (380)
Q Consensus 280 ~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~e~~~i~~~~~~~v~~a~~~a 333 (380)
.||+++|++.|+ .+|||.+|+++|+++|+||++++++|+++++++|++++++|
T Consensus 241 ~Yr~~~e~~~~~-~~dpi~~~~~~L~~~g~~~~~~~~~~~~~~~~~v~~a~~~a 293 (293)
T cd02000 241 RYRTKEEVEEWK-KRDPILRLRKYLIEAGILTEEELAAIEAEVKAEVEEAVEFA 293 (293)
T ss_pred cCCCHHHHHHHh-cCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999998 69999999999999999999999999999999999999864
|
PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine). |
| >PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-60 Score=508.13 Aligned_cols=340 Identities=14% Similarity=0.152 Sum_probs=295.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhhHHHHHHHh------cCCCCcEEEc-ccccHHHHHH--
Q 016903 32 KVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAA------AIKNDDFVVP-QYREPGVLLW-- 102 (380)
Q Consensus 32 ~~~~e~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~G~Ea~~~~~~~------~l~~~D~v~~-~yR~~~~~l~-- 102 (380)
.+++++++++|+.|+++|.||+++..+|..++. | ++.|||++.+++.. +++++|++++ +||||+++|+
T Consensus 185 ~~s~e~~~~il~~m~~~r~fE~fl~~~f~~~Kr-f--~~eG~Ea~i~gl~~li~~a~~lg~~D~vigmaHRgrlnvLa~v 261 (924)
T PRK09404 185 SFSAEEKKAILERLTAAEGFERFLHTKFVGQKR-F--SLEGGESLIPMLDEIIRRAGKLGVKEIVIGMAHRGRLNVLVNV 261 (924)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCc-c--cccchhhHHHHHHHHHHHHHhCCCCCEEEecCcCchHHHHHHh
Confidence 789999999999999999999999999988764 3 68999999999988 6778999999 5999999999
Q ss_pred cCCCHHHHHHHhhcCC--CCCCCCCCCccccCCCC-----CC-----ccccCcccccchHHHHHHHHHhhhcCCC-----
Q 016903 103 RGFSMQEFANQCFGNK--ADYGKGRQMPIHYGSNK-----HN-----YFTVSSTIATQLPHAVGAAYALKMDRKD----- 165 (380)
Q Consensus 103 ~G~~~~~~~~e~~g~~--~~~~~G~~~~~H~~~~~-----~~-----~~~~~g~lG~~lp~A~G~A~A~k~~~~~----- 165 (380)
+|++++++|+|++|+. ++.+.++...+|++... -+ ...+.+++|.+.|+|+|+|+|.|+++.+
T Consensus 262 ~G~~~~~ifaEf~Gk~~~~~~~~~GdvkyHlG~~~~~~g~gg~mhi~l~~npShleav~Pva~G~A~A~q~~~~~~~~~~ 341 (924)
T PRK09404 262 LGKPPRDLFAEFEGKHGPDEVLGSGDVKYHLGFSSDRETDGGEVHLSLAFNPSHLEIVNPVVEGSVRARQDRRGDGQDRK 341 (924)
T ss_pred cCCCHHHHHHHHcCCCCCCCCCCCCCcccccCccccccCCCCeeEeeccCCccccccccCeehhHHHHHHHhcCCccccc
Confidence 5999999999999987 33333334444544321 01 1224689999999999999999998877
Q ss_pred -CeeEEEeCcccc-CcchHHHHHHHHHHcCCC---EEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCCCHH
Q 016903 166 -ACAVTYFGDGGT-SEGDFHAALNFSAVTEAP---VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240 (380)
Q Consensus 166 -~~vv~~~GDG~~-~eG~~~Eal~~A~~~~Lp---vi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~ 240 (380)
.++||++|||++ +||.|||+||+|+.|++| +||||+||+|+++|+...+.+...++++|++||+|+++|||+|++
T Consensus 342 ~~v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveNNq~g~tT~~~~~~s~~~~sd~Ak~~giP~~~VDG~D~~ 421 (924)
T PRK09404 342 KVLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQIGFTTSPPDDRSTPYCTDVAKMVQAPIFHVNGDDPE 421 (924)
T ss_pred ceEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEeeCHHHhccchhHHHHHeecCCcEEEEcCCCHH
Confidence 799999999998 799999999999999997 999999999999999988887788999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChhhHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHH
Q 016903 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRS 320 (380)
Q Consensus 241 av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~e~~~i~~ 320 (380)
+|+.+++.|++++|+++||+|||+.|||++|||++|+|. ||+++|++.|++.+||+.+|+++|+++|++|++++++|++
T Consensus 422 AV~~a~~~A~e~~r~g~gPvlIE~~tYR~~GHne~D~p~-yr~p~ey~~~~~~~dpi~~~~~~Li~~G~lt~~e~~~i~~ 500 (924)
T PRK09404 422 AVVFATRLALEYRQKFKKDVVIDLVCYRRHGHNEGDEPS-FTQPLMYKKIKKHPTTRELYADKLVAEGVITEEEADEMVN 500 (924)
T ss_pred HHHHHHHHHHHHHHhcCcCEEEEEEEecCCCCCCCCCCc-CCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999875 9999999999756899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCccccccccCC----------CccHHHHHHHHHHHHHhCCCCCCCCC
Q 016903 321 SVRKQILHALQEAEKAEKPPISDLFTDVYDVS----------PSNLREQEHSLRETIKKHPQDYPSNV 378 (380)
Q Consensus 321 ~~~~~v~~a~~~a~~~p~p~~~~~~~~vy~~~----------~~~~~~~~~~l~~~~~~~p~~~~~~~ 378 (380)
+++++|++|+++|++. .+.+.+..+|... +....+.++.+.+.+...|++|+++.
T Consensus 501 ~~~~~v~~a~~~A~~~---~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~l~~~~~~~~~~P~~f~~h~ 565 (924)
T PRK09404 501 EYRDALDAGFEVVKEW---RPADWLAGDWSPYLGHEWDDPVDTGVPLERLKELAEKLTTVPEGFKVHP 565 (924)
T ss_pred HHHHHHHHHHHHHHhc---CcccccccccccccccccccccCCCCCHHHHHHHHHHhccCCCCCcccH
Confidence 9999999999999986 3556666666511 11223446677777889999998764
|
|
| >TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-54 Score=461.81 Aligned_cols=343 Identities=16% Similarity=0.137 Sum_probs=296.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcccccccchhhHHHHHHHh------cCCCCcEEEcc-cccHHHHHH
Q 016903 31 VKVSEGVAIKMYNDMVTLQTMDTIFYEAQR-QGRISFYLTTSGEEAINIASAA------AIKNDDFVVPQ-YREPGVLLW 102 (380)
Q Consensus 31 ~~~~~e~l~~~y~~M~~~R~~e~~~~~~~~-~g~i~~~~~~~G~Ea~~~~~~~------~l~~~D~v~~~-yR~~~~~l~ 102 (380)
..+++++.+++++.|+++..||+++..+|. ++| | +..|-|++..++-. ..+..|+++++ |||+.++|+
T Consensus 184 ~~~~~~~k~~il~~L~~ae~fE~fl~~kf~g~KR--F--slEG~eslip~l~~~i~~~~~~gv~d~v~gmaHRGRlnvL~ 259 (929)
T TIGR00239 184 AQFNSEEKKRFLSRLTAAEGFERFLGAKFPGAKR--F--SLEGLDALVPMLKEIIRHSVNSGTRDVVLGMAHRGRLNVLV 259 (929)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCce--e--ecccHHHHHHHHHHHHHHHHHcCCCeEEeccccCCcHHHHH
Confidence 468999999999999999999999999885 444 3 56788888776544 44578999998 999999999
Q ss_pred --cCCCHHHHHHHhhcCCCC-CCCCCCCc-cccCC-----------CCCCccccCcccccchHHHHHHHHHhhhcCC---
Q 016903 103 --RGFSMQEFANQCFGNKAD-YGKGRQMP-IHYGS-----------NKHNYFTVSSTIATQLPHAVGAAYALKMDRK--- 164 (380)
Q Consensus 103 --~G~~~~~~~~e~~g~~~~-~~~G~~~~-~H~~~-----------~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~--- 164 (380)
+|++++++|+|+.|+..+ .+.|++.. +|++. ....+.+++|+|+.+.|+|+|.|+|.|+++.
T Consensus 260 nv~gkp~~~if~ef~g~~~~~~~~g~gdvKyHlg~~~~~~~~~~~~~~~~l~~npSHLeav~Pva~G~ArA~q~~~~~~~ 339 (929)
T TIGR00239 260 NVLGKPPEDIFSEFAGKHKSHLPDGTGDVKYHMGRFSSDFTTDGKLVHLALAFNPSHLEIVSPVVIGSTRARLDRLNDSP 339 (929)
T ss_pred HHhCCCHHHHHHHHcCCCCCcccCCCCCcCccCCCcccccccCCCcceeeecCCCcccccccchhhhHHHHHHHhcCCcc
Confidence 999999999999998766 34467655 88884 2456788999999999999999999998865
Q ss_pred ---CCeeEEEeCcccc-CcchHHHHHHHHHHcCCCE---EEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCC
Q 016903 165 ---DACAVTYFGDGGT-SEGDFHAALNFSAVTEAPV---IFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGN 237 (380)
Q Consensus 165 ---~~~vv~~~GDG~~-~eG~~~Eal~~A~~~~Lpv---i~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~ 237 (380)
+.++||++|||++ +||.|||+||+|+.|++|+ ||||+||+|+++|+.....+...++++|++||+|+++|||+
T Consensus 340 ~~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNNqyg~tT~~~~~~s~~~~sd~Ak~ygiP~~~VDG~ 419 (929)
T TIGR00239 340 ESTKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQIGFTTNPLDARSTPYCSDLAKMIQAPIFHVNAD 419 (929)
T ss_pred cccceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEEEcHHHhcCccCHHHHheecCCCEEEECCC
Confidence 5789999999997 8999999999999999997 99999999999998887777778999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChhhHHHHHhcCChHHHHHHHHHHcCCCCHHHHHH
Q 016903 238 DALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESE 317 (380)
Q Consensus 238 D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~e~~~ 317 (380)
|+++|+.+++.|++++|+++||+|||+.|||++|||++|+|..||+ ++++.|++.+||+.+|+++|+++|++|++++++
T Consensus 420 D~~AV~~a~~~Ave~~r~g~gPvlIE~~tYR~~GHne~D~p~~yrp-~~~~~i~~~~dPi~~~~~~Li~~Gv~te~e~~~ 498 (929)
T TIGR00239 420 DPEAVAFATRLAVEYRNTFKRDVFIDLVGYRRHGHNEADEPSATQP-LMYQKIKKHPTPRKVYADKLVSEGVATEEDVTE 498 (929)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEEEeccCCCCCCCCCCccCCH-HHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHH
Confidence 9999999999999999999999999999999999999999988998 778888756899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCC--c---cccccccC--CCccHHHHHHHHHHHHHhCCCCCCCCC
Q 016903 318 LRSSVRKQILHALQEAEKAEKPPIS--D---LFTDVYDV--SPSNLREQEHSLRETIKKHPQDYPSNV 378 (380)
Q Consensus 318 i~~~~~~~v~~a~~~a~~~p~p~~~--~---~~~~vy~~--~~~~~~~~~~~l~~~~~~~p~~~~~~~ 378 (380)
|+++++++|++|++.++..+.|.+. . +..+.+.. ++....+.+..|.+.+...|+.|.++.
T Consensus 499 i~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~l~~l~~~~~~~P~~f~~h~ 566 (929)
T TIGR00239 499 MVNLYRDALEAADCVVPSWREMNTASFTWSPELNHEWDEEYPNKVEMKRLQELAKRISEVPEGVEMHS 566 (929)
T ss_pred HHHHHHHHHHHHHHhhhccCCccccccccccccccccccCCCCCCCHHHHHHHHHHhccCCCCccccH
Confidence 9999999999999999886655433 1 22221111 233345678888899999999987664
|
The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase. |
| >cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-49 Score=372.97 Aligned_cols=230 Identities=19% Similarity=0.225 Sum_probs=208.7
Q ss_pred HHHHHHHHHhcCCcccccccchhhHHHHHHHhcCCC------CcEEEcc-cccHHHHHH--cCCCHHHHHHHhhcCCC--
Q 016903 51 MDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKN------DDFVVPQ-YREPGVLLW--RGFSMQEFANQCFGNKA-- 119 (380)
Q Consensus 51 ~e~~~~~~~~~g~i~~~~~~~G~Ea~~~~~~~~l~~------~D~v~~~-yR~~~~~l~--~G~~~~~~~~e~~g~~~-- 119 (380)
||+++.++|..-+ +| +..|+|++++++...+++ .|+++++ ||||.++|+ +|++++++|+|+.|+.+
T Consensus 1 ~e~f~~~~f~~~k-rf--s~eG~Es~~~~l~~~~~~~~~~~~~d~v~gm~HRgrln~L~~~lg~~~~~if~ef~g~~~~~ 77 (265)
T cd02016 1 FEQFLATKFPGQK-RF--GLEGAESLIPALDELIDRAAELGVEEVVIGMAHRGRLNVLANVLGKPLEQIFSEFEGKSEFP 77 (265)
T ss_pred ChhhHHHhcCCCe-EE--EecCHHHHHHHHHHHHHHHHhcCCCeEEeccCcCCcHHHHHHHhCCCHHHHHHHhhCCCCCC
Confidence 5778877775322 23 589999999999999886 7999998 999999999 99999999999999887
Q ss_pred -CCCCCCCCccccCCCC-----------CCccccCcccccchHHHHHHHHHhhhcC-----CCCeeEEEeCcccc-Ccch
Q 016903 120 -DYGKGRQMPIHYGSNK-----------HNYFTVSSTIATQLPHAVGAAYALKMDR-----KDACAVTYFGDGGT-SEGD 181 (380)
Q Consensus 120 -~~~~G~~~~~H~~~~~-----------~~~~~~~g~lG~~lp~A~G~A~A~k~~~-----~~~~vv~~~GDG~~-~eG~ 181 (380)
+.+.|+++++|++... ..+.+++|++|.++|+|+|+|+|.|+++ .+.++||++|||++ +||.
T Consensus 78 ~~~~~~gdv~yHlg~~~~~~~~~~~~~~~~l~~npS~l~~~~pva~G~A~A~k~~~~~~~~~~~v~v~~~GDgA~~~qG~ 157 (265)
T cd02016 78 EDDEGSGDVKYHLGYSSDRKTPSGKKVHLSLAPNPSHLEAVNPVVMGKTRAKQDYRGDGERDKVLPILIHGDAAFAGQGV 157 (265)
T ss_pred CCCCCCCCcCcCCccCcccccCCCCeeEEEecCCCcccccccCeehhHHHHHHHhcCCccCCCeEEEEEecCccccCCCh
Confidence 5567888999997653 5678899999999999999999999997 47899999999996 7999
Q ss_pred HHHHHHHHHHcCCC---EEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCC
Q 016903 182 FHAALNFSAVTEAP---VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGR 258 (380)
Q Consensus 182 ~~Eal~~A~~~~Lp---vi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~g 258 (380)
|||+||+|..|++| +||||+||+|+++|+...+++..+++++|++||+|+++|||+|+++|+++++.|++++|+++|
T Consensus 158 ~~EalNlA~l~~lp~gg~ifvveNNq~g~sT~~~~~~~~~~~~~~a~~~gip~~~VdG~D~~aV~~a~~~A~~~~r~g~g 237 (265)
T cd02016 158 VYETLNLSNLPGYTTGGTIHIVVNNQIGFTTDPRDSRSSPYCTDVAKMIGAPIFHVNGDDPEAVVRATRLALEYRQKFKK 237 (265)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEEeCCEEEEecHHHhcccccHHHHHeecCCCEEEEcCCCHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999998 999999999999999998888889999999999999999999999999999999999999999
Q ss_pred cEEEEEEeecCCCCCCCCCCCCCCCh
Q 016903 259 PILIEALTYRVGHHTTSDDSTKYRPV 284 (380)
Q Consensus 259 P~lIe~~t~R~~gHs~~Dd~~~Yr~~ 284 (380)
|+|||++|||++|||++|+|. |+.|
T Consensus 238 p~lIe~~tYR~~GHse~D~p~-~t~p 262 (265)
T cd02016 238 DVVIDLVCYRRHGHNELDEPS-FTQP 262 (265)
T ss_pred CEEEEEEEecCCCCCCcCCcc-ccCC
Confidence 999999999999999999874 5554
|
OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle. |
| >PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=311.60 Aligned_cols=344 Identities=17% Similarity=0.168 Sum_probs=277.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCcccccccchhhHHHHHHHhcCC------CCcEEEcc-cccHHHHH
Q 016903 30 FVKVSEGVAIKMYNDMVTLQTMDTIFYEAQ-RQGRISFYLTTSGEEAINIASAAAIK------NDDFVVPQ-YREPGVLL 101 (380)
Q Consensus 30 ~~~~~~e~l~~~y~~M~~~R~~e~~~~~~~-~~g~i~~~~~~~G~Ea~~~~~~~~l~------~~D~v~~~-yR~~~~~l 101 (380)
..+.++++.+.+++.+..+..||.++..+| .|+| | +..|-|.+...+-..|+ -+.+++++ |||+.+.|
T Consensus 487 ~~kp~~~eq~~iL~~LnaaEaFEtFLqtkyvGqkR--F--slEG~Es~iplld~~~~~aa~~~l~evvigm~HRGRLNVL 562 (1228)
T PRK12270 487 HEKPTREEQKRILSKLNAAEAFETFLQTKYVGQKR--F--SLEGGESLIPLLDAVLDQAAEHGLDEVVIGMAHRGRLNVL 562 (1228)
T ss_pred CCCCCHHHHHHHHHHhhhHHHHHHHHhhhccccee--e--eecchhhHHHHHHHHHHHHHhcCCceEEecccccchHHHH
Confidence 467899999999999999999999998887 4554 3 55788887766555443 46888885 99999999
Q ss_pred H--cCCCHHHHHHHhhcCCCCC-CCCCC-CccccCCCC-----------CCccccCcccccchHHHHHHHHHhhhcC---
Q 016903 102 W--RGFSMQEFANQCFGNKADY-GKGRQ-MPIHYGSNK-----------HNYFTVSSTIATQLPHAVGAAYALKMDR--- 163 (380)
Q Consensus 102 ~--~G~~~~~~~~e~~g~~~~~-~~G~~-~~~H~~~~~-----------~~~~~~~g~lG~~lp~A~G~A~A~k~~~--- 163 (380)
+ .|.+..++|.||-|+.+.. ..|+| ..+|++... .....+.++|...-|+.-|++.|.+..-
T Consensus 563 ani~gK~y~qiF~EFegn~dp~~~~GsGDVKYHlG~eG~~~~~~g~~~~v~laaNPSHLEavdpVleGivRakQd~l~~g 642 (1228)
T PRK12270 563 ANIVGKPYSQIFREFEGNLDPRSAQGSGDVKYHLGAEGTFTQMFGDEIKVSLAANPSHLEAVDPVLEGIVRAKQDRLDKG 642 (1228)
T ss_pred HHHhcCCHHHHHHHhcCCCCccccCcCcceeeeccCceeeeccCCCeeEEEEecCchhhhhcchHhhhhhhhhhhhhccc
Confidence 7 7999999999999987643 34554 678876421 2235568999999999999999987431
Q ss_pred C---CCeeEEEeCcccc-CcchHHHHHHHHHHcCCC---EEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeC
Q 016903 164 K---DACAVTYFGDGGT-SEGDFHAALNFSAVTEAP---VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDG 236 (380)
Q Consensus 164 ~---~~~vv~~~GDG~~-~eG~~~Eal~~A~~~~Lp---vi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG 236 (380)
. ....|+++||++| +||.++|.||+|..+++| +||||.||+++++|......+.....++|+++++|+++|||
T Consensus 643 ~~~~~vlpi~~hGdaafagQGvV~Etlnla~l~~y~tGGtIhvivNNqiGftT~p~~~Rss~y~td~ak~~~~PifhVNG 722 (1228)
T PRK12270 643 EEGFTVLPILLHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVNNQVGFTTAPESSRSSEYATDVAKMIQAPIFHVNG 722 (1228)
T ss_pred ccCCceeEEEEeccccccCCchHHHHHHHHhccCCCCCCeEEEEEecCcccccCccccccchhhHHHHhhcCCCEEeECC
Confidence 1 3468999999997 899999999999999998 99999999999999988777777778999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChhhHHHHHhcCChHHHHHHHHHHcCCCCHHHHH
Q 016903 237 NDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIES 316 (380)
Q Consensus 237 ~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~e~~ 316 (380)
+|+++|..+.+.|+++++++++|++|++.|||.+||+++|||+ +..+..++.....+..-+.|.+.|+.+|.+|++|++
T Consensus 723 dDpeAv~~va~lA~~yr~~f~~dVvIdlvcYRrrGHNEgDdPS-mtqP~mY~~i~~~~svrk~yte~Ligrgdit~ee~e 801 (1228)
T PRK12270 723 DDPEAVVRVARLAFEYRQRFHKDVVIDLVCYRRRGHNEGDDPS-MTQPLMYDLIDAKRSVRKLYTEALIGRGDITVEEAE 801 (1228)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEEEEEEeecCCCCCCCcc-cCCchhhhhhhhcchHHHHHHHHHhhcCCCCHHHHH
Confidence 9999999999999999999999999999999999999999986 344555555543333445899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCC---ccccc-cccC--CCccHHHHHHHHHHHHHhCCCCCCCCC
Q 016903 317 ELRSSVRKQILHALQEAEKAEKPPIS---DLFTD-VYDV--SPSNLREQEHSLRETIKKHPQDYPSNV 378 (380)
Q Consensus 317 ~i~~~~~~~v~~a~~~a~~~p~p~~~---~~~~~-vy~~--~~~~~~~~~~~l~~~~~~~p~~~~~~~ 378 (380)
++..+.+.+++.++...++....+++ ....+ .... .+-.-.+.++.+.+.....|+.|.++.
T Consensus 802 ~~l~dy~~~Le~~f~e~re~~~~~~~~~~~~~~~~~~~~~~~Tav~~~~l~~i~da~~~~PegFt~Hp 869 (1228)
T PRK12270 802 QALRDYQGQLERVFNEVREAEKKPPEPPESVESDQGPPAGVDTAVSAEVLERIGDAHVNLPEGFTVHP 869 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCCCccccccCCCCCCCCCCHHHHHHHHHHhccCCCCCccCh
Confidence 99999999999999988765433322 11111 1110 122345678888888889999998874
|
|
| >PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=301.75 Aligned_cols=225 Identities=17% Similarity=0.165 Sum_probs=187.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccccccchhhHHHHHHHhcCC---CCcEEE--cccccHHHH
Q 016903 27 DSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIK---NDDFVV--PQYREPGVL 100 (380)
Q Consensus 27 ~~~~~~~~~e~l~~~y~~M~~~R~~e~~~~~~~~~g~i-~~~~~~~G~Ea~~~~~~~~l~---~~D~v~--~~yR~~~~~ 100 (380)
|.|.++++.++|..+-..+ |.+ ..+.++++ +++++++|+ +.++++.++. +.|+++ ++||+|++.
T Consensus 9 p~d~~~l~~~~l~~l~~~i---r~~-----~~~~~~~~~Gh~~~~lg~--vel~~al~~~f~~~~D~ii~d~ghr~~~~~ 78 (581)
T PRK12315 9 PADLKKLSLDELEQLASEI---RTA-----LLEKDSAHGGHVGPNLGV--VELTIALHYVFNSPKDKIVWDVSHQSYPHK 78 (581)
T ss_pred HHHHhhCCHHHHHHHHHHH---HHH-----HHHHHHhcCCCcCcchhH--HHHHHHHHhhcCCCCCcEEEecCCchHHHH
Confidence 4457788877776665544 433 22334555 599999999 4445555665 899999 899999999
Q ss_pred HHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCccccCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcc
Q 016903 101 LWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180 (380)
Q Consensus 101 l~~G~~~~~~~~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG 180 (380)
+++|++++.++.+++|+.+|++++.+ +.|.. ...|+.|+++|+|+|+|+|.|+++.+.+|||++|||++++|
T Consensus 79 l~~G~~~~~~~~~~~g~~~G~~~~~~-s~~~~-------~~~g~~~~~ls~A~G~A~A~k~~~~~~~vv~~iGDG~~~eG 150 (581)
T PRK12315 79 MLTGRKEAFLDPDHYDDVTGYTNPEE-SEHDF-------FTVGHTSTSIALATGLAKARDLKGEKGNIIAVIGDGSLSGG 150 (581)
T ss_pred HHcCCccchhhHHHcCCCCCCCCCCC-CCCCC-------cCCCcHHHHHHHHHHHHHHHHhcCCCCeEEEEECchhhhcc
Confidence 99999999999999999999988776 33321 35688999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHcCCCEEEEEEcCCccccccccc---------ccCCcCHHHHHhhcCceEEEE-eCCCHHHHHHHHHHHH
Q 016903 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISD---------QFRSDGAVVKGRAYGVRSIRV-DGNDALAIYSAVHAAR 250 (380)
Q Consensus 181 ~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~---------~~~~~~~~~~a~a~G~~~~~V-dG~D~~av~~a~~~a~ 250 (380)
.+||+||+|+.|++|+||||+||+|++++++.. .....++..++++|||+++.| ||||+.++++++++|.
T Consensus 151 ~~~EAln~A~~~k~~li~Ii~dN~~si~~~~~~~~~~l~~~~~~~~~~~~~~~~a~G~~~~~v~DG~D~~~l~~a~~~a~ 230 (581)
T PRK12315 151 LALEGLNNAAELKSNLIIIVNDNQMSIAENHGGLYKNLKELRDTNGQSENNLFKAMGLDYRYVEDGNDIESLIEAFKEVK 230 (581)
T ss_pred hHHHHHHHHHhhCCCEEEEEECCCCcCCCCCchhhhhhhhhhhcccccHHHHHHhcCCeEEEeeCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999987742 223445678999999999998 9999999999998865
Q ss_pred HHhhccCCcEEEEEEeecCCCCC
Q 016903 251 EMAIGEGRPILIEALTYRVGHHT 273 (380)
Q Consensus 251 ~~ar~~~gP~lIe~~t~R~~gHs 273 (380)
++++|++|+++|+|.+|..
T Consensus 231 ----~~~gP~~i~~~T~kG~G~~ 249 (581)
T PRK12315 231 ----DIDHPIVLHIHTLKGKGYQ 249 (581)
T ss_pred ----hCCCCEEEEEEeecCCCCC
Confidence 4689999999999999854
|
|
| >COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.2e-31 Score=238.25 Aligned_cols=217 Identities=19% Similarity=0.207 Sum_probs=173.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccccccchh-hHHHHHHHhcCC---------CCcEEEcccccH------HHHHH
Q 016903 39 IKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGE-EAINIASAAAIK---------NDDFVVPQYREP------GVLLW 102 (380)
Q Consensus 39 ~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~G~-Ea~~~~~~~~l~---------~~D~v~~~yR~~------~~~l~ 102 (380)
.++-+....+|.---++.....+|.. .++++. |-.++.....|+ ..|+++.+ .|| +.+..
T Consensus 8 ~~L~~~A~~iRr~~v~m~~~~~~GH~---G~SLS~~eILa~LYf~~m~~~p~~p~~~~RDrfiLS-KGHaa~AlYa~Lae 83 (243)
T COG3959 8 DELERIAREIRRNIVRMLANAGSGHV---GGSLSVVEILAVLYFKIMNIDPDDPKWPGRDRFILS-KGHAAPALYATLAE 83 (243)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCCc---CccchHHHHHHHHHHHHhccCCCCCCCCCCCeEEEe-cccchHHHHHHHHH
Confidence 34444455556554444444445533 333332 444444444432 24777776 455 24445
Q ss_pred cCCCHHHHHHHhhcCCCCCCCCCCCccccCC-CCCCccccCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcch
Q 016903 103 RGFSMQEFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGD 181 (380)
Q Consensus 103 ~G~~~~~~~~e~~g~~~~~~~G~~~~~H~~~-~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~ 181 (380)
+|+.+++-+..+.. .|+.+++|+.. ..+++..++|+||+|+++|+|+|++.|+++.+..|++++|||+++||.
T Consensus 84 ~G~~p~eeL~~~~~------~~srL~~Hp~~~~~pgve~stGSLGqGLsvavGmAlg~kl~~~~~~VyvilGDGEl~EG~ 157 (243)
T COG3959 84 KGYFPEEELETFRR------IGSRLPGHPERNKTPGVEVSTGSLGQGLSVAVGMALGAKLKGSPYRVYVILGDGELDEGQ 157 (243)
T ss_pred cCCCCHHHHHHhcc------CCCcCCCCCccCCCCceeecCCcccccchHHHHHHHHHhhcCCCceEEEEecCccccccc
Confidence 89988888887653 48889999987 556899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCC-CEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcE
Q 016903 182 FHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPI 260 (380)
Q Consensus 182 ~~Eal~~A~~~~L-pvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~ 260 (380)
+|||+.+|++|+| |+|.||+-|..++++.+.+..+..++.+++++|||++++|||||++++++++.++... .++|.
T Consensus 158 ~WEAam~Aah~~L~NLiaivD~N~~QldG~t~~i~~~~pL~~k~eAFGw~V~evdG~d~~~i~~a~~~~~~~---~~rP~ 234 (243)
T COG3959 158 VWEAAMTAAHYKLDNLIAIVDRNKLQLDGETEEIMPKEPLADKWEAFGWEVIEVDGHDIEEIVEALEKAKGS---KGRPT 234 (243)
T ss_pred HHHHHHHHHHhccCcEEEEEecCCcccCCchhhccCcchhHHHHHhcCceEEEEcCcCHHHHHHHHHhhhcc---CCCCe
Confidence 9999999999999 8999999999999999999999999999999999999999999999999999887642 34999
Q ss_pred EEEEEeec
Q 016903 261 LIEALTYR 268 (380)
Q Consensus 261 lIe~~t~R 268 (380)
+|.+.|.+
T Consensus 235 ~IIa~Tvk 242 (243)
T COG3959 235 VIIAKTVK 242 (243)
T ss_pred EEEEeccc
Confidence 99999865
|
|
| >KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-29 Score=251.45 Aligned_cols=344 Identities=13% Similarity=0.136 Sum_probs=281.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhhHHHHHHHhcC------CCCcEEEcc-cccHHHHHH
Q 016903 30 FVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAI------KNDDFVVPQ-YREPGVLLW 102 (380)
Q Consensus 30 ~~~~~~e~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~G~Ea~~~~~~~~l------~~~D~v~~~-yR~~~~~l~ 102 (380)
...++.|+.+-+|..+.++-.||+++..++..-| +| ...|-|++..|+-..+ +.+++|+++ |||+.+.|+
T Consensus 243 ~~q~s~e~k~~il~RL~~st~FE~FLa~Kw~seK-RF--GLEGcE~lIP~mK~iiDrS~elGVe~iviGMpHRGRLNvL~ 319 (1017)
T KOG0450|consen 243 PMQYSHEQKRVILDRLTRSTRFEEFLATKWPSEK-RF--GLEGCEVLIPAMKTIIDRSSELGVESIVIGMPHRGRLNVLA 319 (1017)
T ss_pred ccccCHHHHHHHHHHHHHhhHHHHHHhhhCCccc-cc--cccchhhhhhHHHHHhhhhhhcCchheEecCCccchhHHHH
Confidence 4578999999999999999999999998886433 23 3468888887776544 567999995 999999887
Q ss_pred --cCCCHHHHHHHhhcCCCCCCCCCC-CccccCCC---C---------CCccccCcccccchHHHHHHHHHhhhcC----
Q 016903 103 --RGFSMQEFANQCFGNKADYGKGRQ-MPIHYGSN---K---------HNYFTVSSTIATQLPHAVGAAYALKMDR---- 163 (380)
Q Consensus 103 --~G~~~~~~~~e~~g~~~~~~~G~~-~~~H~~~~---~---------~~~~~~~g~lG~~lp~A~G~A~A~k~~~---- 163 (380)
.-.+++++|.+|.|.. ....|+| ..+|++.. . +....++++|.+.-|+.+|...|.++..
T Consensus 320 NVvRKpl~qIfseF~g~~-~~DeGSGDVKYHLG~~~~R~~r~s~k~i~LslVANPSHLEA~DPVV~GKtrA~q~y~~D~~ 398 (1017)
T KOG0450|consen 320 NVVRKPLEQIFSEFSGLE-AADEGSGDVKYHLGMYYERPNRVSGKNITLSLVANPSHLEAVDPVVMGKTRAEQFYTGDEE 398 (1017)
T ss_pred HHHhhHHHHHHHhccCCC-CCcCCCCceeeeeccccccccccCCceeEEEEecCchhhcccCceeechHHHHHHhccccc
Confidence 4579999999999843 3333544 67776641 1 2346778999999999999999998753
Q ss_pred -CCCeeEEEeCcccc-CcchHHHHHHHHHHcC--C-CEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCCC
Q 016903 164 -KDACAVTYFGDGGT-SEGDFHAALNFSAVTE--A-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGND 238 (380)
Q Consensus 164 -~~~~vv~~~GDG~~-~eG~~~Eal~~A~~~~--L-pvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D 238 (380)
++...|.++||++| .||.++|.+.+...-. . ..|+||.||+.+++|......+.+...+.|++.+.|+++|+++|
T Consensus 399 ~~k~m~ILiHGDaaFAgQGVVyET~hls~LP~YtT~GTvHvVvNNQIgFTTDPR~aRSspYcTDvar~v~aPIFHVNaDD 478 (1017)
T KOG0450|consen 399 GKKVMGILIHGDAAFAGQGVVYETFHLSDLPSYTTGGTVHVVVNNQIGFTTDPRFARSSPYCTDVARVVNAPIFHVNADD 478 (1017)
T ss_pred cceeEEEEEecchhhccCceEEEeeccccCCCcccCCeEEEEEccccccccCcccccCCCCchhHHHHhCCCeEeecCCC
Confidence 34567999999999 8999999999877644 3 59999999999999988777777788899999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChhhHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHH
Q 016903 239 ALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESEL 318 (380)
Q Consensus 239 ~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~e~~~i 318 (380)
+++|.-+++-|.+.....++.++|+++|||..||++.|.| .+..+-.++..++.+..+..|.+.|+++|.+|+++++++
T Consensus 479 ~EAV~~vc~vAAeWR~tFh~DvVVDlVcyRR~GHNE~DeP-~FTQPlMYk~I~k~~~~l~~Y~ekLl~egtvs~~evd~~ 557 (1017)
T KOG0450|consen 479 PEAVMHVCKVAAEWRKTFHKDVVVDLVCYRRHGHNEIDEP-MFTQPLMYKQIRKHKPVLQKYAEKLLSEGTVSQQEVDEE 557 (1017)
T ss_pred hHHHHHHHHHHHHHHHHhccCeEEEEEEEeecCCCcccCc-cccchHHHHHHHcCCcHHHHHHHHHHhcCcccHHHHHHH
Confidence 9999999999999999999999999999999999999987 478888899998767788899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCccccccc----cC----------CCccHHHHHHHHHHHHHhCCCCCCCCC
Q 016903 319 RSSVRKQILHALQEAEKAEKPPISDLFTDVY----DV----------SPSNLREQEHSLRETIKKHPQDYPSNV 378 (380)
Q Consensus 319 ~~~~~~~v~~a~~~a~~~p~p~~~~~~~~vy----~~----------~~~~~~~~~~~l~~~~~~~p~~~~~~~ 378 (380)
.+.+..-+++|++.+++...-...+-++.-| .+ ++....+.++.+...+...|++|+++.
T Consensus 558 ~~k~~~I~eeafe~sKd~~~~~~rdWL~spW~gF~spd~~~~i~~~~~Tgv~~e~L~~ig~~~ss~PE~F~~Hr 631 (1017)
T KOG0450|consen 558 IKKYDNILEEAFERSKDYKPLHIRDWLDSPWPGFFSPDGQPKILPCPSTGVKEEILKHIGKVASSVPEGFKIHR 631 (1017)
T ss_pred HHHHHHHHHHHHHhhccccchhhhhhhcCCCccccCccCCCccccCCCCCCCHHHHHHHHHhhccCCcccchhh
Confidence 9999999999999998764333222222222 21 133345678889999999999998764
|
|
| >COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-28 Score=259.27 Aligned_cols=341 Identities=14% Similarity=0.134 Sum_probs=278.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcccccccchhhHHHHHHHhc------CCCCcEEEcc-cccHHHHH
Q 016903 30 FVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR-QGRISFYLTTSGEEAINIASAAA------IKNDDFVVPQ-YREPGVLL 101 (380)
Q Consensus 30 ~~~~~~e~l~~~y~~M~~~R~~e~~~~~~~~-~g~i~~~~~~~G~Ea~~~~~~~~------l~~~D~v~~~-yR~~~~~l 101 (380)
.+.++.|+.+.+|+.+..+..||+++..+|. ++| | +-.|-|+...++-.. .+..++++++ |||+.++|
T Consensus 169 ~~~~~~e~k~~~l~~L~~ae~fE~fl~~kf~g~KR--F--slEG~eslip~l~~~i~~~~~~G~~~vviGMaHRGRLNvL 244 (906)
T COG0567 169 KPTFTAEEKKAILKRLTAAEGFERFLHTKFPGAKR--F--SLEGGESLIPMLDELIDRAGKQGVKEVVIGMAHRGRLNVL 244 (906)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCcc--c--cccchhhHHHHHHHHHHHHHhcCcceEEecccccchHHHH
Confidence 4678999999999999999999999988874 554 3 557888887765443 4567999995 99999998
Q ss_pred H--cCCCHHHHHHHhhcCCCCCCCCCCCccccCCC----------CCCccccCcccccchHHHHHHHHHhhhcCCC----
Q 016903 102 W--RGFSMQEFANQCFGNKADYGKGRQMPIHYGSN----------KHNYFTVSSTIATQLPHAVGAAYALKMDRKD---- 165 (380)
Q Consensus 102 ~--~G~~~~~~~~e~~g~~~~~~~G~~~~~H~~~~----------~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~---- 165 (380)
+ .|.+++.+|.||.|+......-+...+|++.. ......++++|....|+..|.+.|.+-...+
T Consensus 245 ~nvlgKp~~~if~eF~g~~~~~~~sGDVKYH~G~~~~~~~~~~~v~l~La~NPSHLE~v~PVV~G~vRa~Qd~~~d~~~~ 324 (906)
T COG0567 245 VNVLGKPYRDIFDEFEGKSAEPDLSGDVKYHLGFSSDRQTDGGKVHLSLAFNPSHLEIVNPVVEGSVRAKQDRLGDTERD 324 (906)
T ss_pred HHHhCCCHHHHHHHhCCCCCCCCcccccccccccccccccCCCeeEEEecCCcchhhhhchhhhcchHhhhhhhccCccc
Confidence 6 79999999999999764332234466776531 1224567899999999999999998765322
Q ss_pred -CeeEEEeCcccc-CcchHHHHHHHHHHc--CC-CEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCCCHH
Q 016903 166 -ACAVTYFGDGGT-SEGDFHAALNFSAVT--EA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240 (380)
Q Consensus 166 -~~vv~~~GDG~~-~eG~~~Eal~~A~~~--~L-pvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~ 240 (380)
...+.++||.++ +||.+.|.||+...- .. +.|+||.||+.+.+|......+.+...+.|+++++|+++|+|.||+
T Consensus 325 k~lpiliHGDAAfaGQGVV~Etlnls~~~gysvgGtiHiviNNQiGFTTsp~~sRSt~Y~TDvAKm~~aPifHVN~DDPE 404 (906)
T COG0567 325 KVLPILIHGDAAFAGQGVVAETLNLSRLDGYSVGGTWHIVINNQIGFTTSPADARSTPYCTDVAKMIEAPIFHVNADDPE 404 (906)
T ss_pred eeEEEEEecChhcCCccHHHHHHHhhCCCCcccCCeEEEEEecCCCCCCCcccccCCCCCCChhhccCCceeecccCCch
Confidence 456799999999 899999999999885 45 8999999999999998776667777779999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChhhHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHH
Q 016903 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRS 320 (380)
Q Consensus 241 av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~e~~~i~~ 320 (380)
++..+.+-|++++..++++++|++.|||.+||+++|+|. +..+..++..++...+...+.+.|+++|++|+++.+.+.+
T Consensus 405 Av~~a~~~A~e~R~~F~kDvvIDlvcYRr~GHNE~DePs-~TqP~mY~~I~~h~t~r~~ya~~Lv~~gvis~~~~~~~~~ 483 (906)
T COG0567 405 AVLFAPALALEYRNGFKKDVVIDLVCYRRHGHNEGDEPS-VTQPLMYQKIKKHPTVRKLYADKLIAEGVISEEEADELVN 483 (906)
T ss_pred hhhhhHHHHHHHHhhcCCCeeeecccCCCCCCCcccccc-ccCHHHHHHHhcCCChhhhHHHHHHhhccccHHHHHHHHH
Confidence 999999999999999999999999999999999999986 5677888888766788889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCccccccccC---------CCccHHHHHHHHHHHHHhCCCCCCCCC
Q 016903 321 SVRKQILHALQEAEKAEKPPISDLFTDVYDV---------SPSNLREQEHSLRETIKKHPQDYPSNV 378 (380)
Q Consensus 321 ~~~~~v~~a~~~a~~~p~p~~~~~~~~vy~~---------~~~~~~~~~~~l~~~~~~~p~~~~~~~ 378 (380)
+++..++..+...+... .-+.+...+.. .+....+.+++|...+.+.|+.|..++
T Consensus 484 ~~r~~L~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~t~v~~~~L~~L~~kl~~~Pe~f~~h~ 547 (906)
T COG0567 484 DYRDALDQGFEVVKEYK---EMDWLEGDWSGYLNAGLRHVDTGVPKKTLKELGKKLCTIPEGFEVHP 547 (906)
T ss_pred HHHHHhhhhhhHHhHHH---hhhccccccccccCCcccccccccCHHHHHHHHHHhhcCCcceehhH
Confidence 99999999888776554 11111111111 122234568889999999999998875
|
|
| >KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-28 Score=243.37 Aligned_cols=305 Identities=17% Similarity=0.152 Sum_probs=248.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhhHHHHHHHhc------CCCCcEEEc-ccccHHHHHH-
Q 016903 31 VKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAA------IKNDDFVVP-QYREPGVLLW- 102 (380)
Q Consensus 31 ~~~~~e~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~G~Ea~~~~~~~~------l~~~D~v~~-~yR~~~~~l~- 102 (380)
..+.++++.++-+.|+++..||.++..+|.+-| -..+.|.|.+.+=.-.. -+..|+|++ .|||+..++.
T Consensus 152 e~l~keEr~~i~~Lmlksq~fD~FlatKFpTvK---RYGgEGAESM~aFF~eLl~~sa~~~ie~viigmpHRGRlnLlt~ 228 (913)
T KOG0451|consen 152 EQLGKEERCEIAELMLKSQAFDNFLATKFPTVK---RYGGEGAESMLAFFWELLRDSAQANIEHVIIGMPHRGRLNLLTA 228 (913)
T ss_pred HHhhHHHHHHHHHHHHhhhhHHHHHHhccchhh---hhccccHHHHHHHHHHHHHHHHhcCcceEEEeccccCcchHHHH
Confidence 357899999999999999999999988875422 11344555543222112 246799999 4999998885
Q ss_pred -cCCCHHHHHHHhhcCCCCCC---CCCCCccccCCC--------C--CCccccCcccccchHHHHHHHHHhhhcC-----
Q 016903 103 -RGFSMQEFANQCFGNKADYG---KGRQMPIHYGSN--------K--HNYFTVSSTIATQLPHAVGAAYALKMDR----- 163 (380)
Q Consensus 103 -~G~~~~~~~~e~~g~~~~~~---~G~~~~~H~~~~--------~--~~~~~~~g~lG~~lp~A~G~A~A~k~~~----- 163 (380)
..+++..||..+.|.+..+. .-+..-+|+.+. . .-+.++++++.+..|+|+|.+.+.+...
T Consensus 229 Ll~fpP~~mFRK~~G~sEFpE~~~A~gDVlSHl~sS~dykg~~~~lhvtMlpNPSHLEAvNPVAmGKtR~rqqsr~~Gdy 308 (913)
T KOG0451|consen 229 LLNFPPAKMFRKLSGASEFPEDIEAMGDVLSHLHSSEDYKGLGKKLHVTMLPNPSHLEAVNPVAMGKTRSRQQSRGEGDY 308 (913)
T ss_pred HhcCCHHHHHHHhcCcccCchhhhHHHHHHHHhhhhhhhcccCCceEEEecCChhhhhccCchhhcchhHHHHhhcCCCC
Confidence 68999999999999876542 122233444321 1 2356788999999999999999976531
Q ss_pred ---------CCCeeEEEeCcccc-CcchHHHHHHHHHH--cCC-CEEEEEEcCCcccccccccccCCcCHHHHHhhcCce
Q 016903 164 ---------KDACAVTYFGDGGT-SEGDFHAALNFSAV--TEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (380)
Q Consensus 164 ---------~~~~vv~~~GDG~~-~eG~~~Eal~~A~~--~~L-pvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (380)
..-..+.++|||+| .||.++|+++++-. +++ ..|++|.||+.+.++|.+...+....++++++++++
T Consensus 309 spd~sa~~Gd~Vlnv~vHGDaaF~GQGiv~E~~~ls~~PHFrvGGsvHLivNNQvgfTtp~~rGRSs~ycsDiaK~~~~p 388 (913)
T KOG0451|consen 309 SPDSSAPFGDHVLNVIVHGDAAFAGQGIVQECLNLSYVPHFRVGGSVHLIVNNQVGFTTPGDRGRSSAYCSDIAKSIQAP 388 (913)
T ss_pred CCCCcCCCCCceEEEEEecchhhccCcccHHHHhhccCCceeecceEEEEecccccccCcccccccchhhhHHHHHhCCC
Confidence 11256778999999 89999999999764 667 699999999999999999888888888999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChhhHHHHHhcCChHH-HHHHHHHHcCC
Q 016903 231 SIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVT-RFRKWIESNGW 309 (380)
Q Consensus 231 ~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~-~~~~~L~~~g~ 309 (380)
+++|+|.|+++|.++.+-|++|-|+.++.++|+..|||.+||++.||| .|.++-.++..+ ++..++ .|.+.|++.|+
T Consensus 389 viHVNGD~PEevvraTrLAf~Yqr~FRKDvfIdL~CfRrwgHnelddp-~ftspvmyk~v~-aReSvPdlya~~L~~eg~ 466 (913)
T KOG0451|consen 389 VIHVNGDDPEEVVRATRLAFRYQREFRKDVFIDLNCFRRWGHNELDDP-TFTSPVMYKEVE-ARESVPDLYAQQLAKEGV 466 (913)
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHHhhhhheeehHHHHHhccccccCc-cccChhHHHHHH-hhhcccHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999999998 589998888886 466665 58999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 016903 310 WNGDIESELRSSVRKQILHALQEAEKAEKPP 340 (380)
Q Consensus 310 ~t~~e~~~i~~~~~~~v~~a~~~a~~~p~p~ 340 (380)
+|++++++++++.-+.+.+.++.+..+.+|+
T Consensus 467 ~tee~vkE~~~~y~~~Ln~eL~~~~~y~Pp~ 497 (913)
T KOG0451|consen 467 LTEEKVKEMRDEYMKYLNEELALAPAYQPPP 497 (913)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhcCCccCCCc
Confidence 9999999999999999999999888775554
|
|
| >PRK12754 transketolase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-27 Score=251.01 Aligned_cols=178 Identities=25% Similarity=0.274 Sum_probs=149.5
Q ss_pred cEEEcc--cccH---HHHHHcCC-CHHHHHHHhhcCCCCCCCCCCCccccCCC-CCCccccCcccccchHHHHHHHHHhh
Q 016903 88 DFVVPQ--YREP---GVLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYALK 160 (380)
Q Consensus 88 D~v~~~--yR~~---~~~l~~G~-~~~~~~~e~~g~~~~~~~G~~~~~H~~~~-~~~~~~~~g~lG~~lp~A~G~A~A~k 160 (380)
|.++.+ |... +.+...|+ ...+-+.+|+. .|+..++|+... .+++..++|++|+|+++|+|+|+|.|
T Consensus 58 DRfvlS~GH~~~~lYa~l~~~G~~~~~e~L~~fr~------~gs~~~gHpe~~~~pgve~stG~LGqGl~~AvG~AlA~k 131 (663)
T PRK12754 58 DRFVLSNGHGSMLIYSLLHLTGYDLPMEELKNFRQ------LHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEK 131 (663)
T ss_pred CeEEEeCccHHHHHHHHHHHcCCCCCHHHHHHhcc------CCCCCCCCCCCCCCCCccccCCcccchHHHHHHHHHHHH
Confidence 775554 4432 23345786 33344555654 377788998763 57888999999999999999999999
Q ss_pred hcC----------CCCeeEEEeCccccCcchHHHHHHHHHHcCCC-EEEEEEcCCcccccccccccCCcCHHHHHhhcCc
Q 016903 161 MDR----------KDACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 161 ~~~----------~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
+.+ .+.+|+|++|||+++||.+|||+++|+.++|| +|+||+||++++++++.... ..++.+++++|||
T Consensus 132 ~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivD~N~~~idg~~~~~~-~~~~~~r~~a~Gw 210 (663)
T PRK12754 132 TLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWF-TDDTAMRFEAYGW 210 (663)
T ss_pred HhhhccCcccccccCCEEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEEcCCCccCcchhhcc-CccHHHHHHhcCC
Confidence 875 37899999999999999999999999999996 89999999999999998876 5799999999999
Q ss_pred eEEE-EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCC
Q 016903 230 RSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS 275 (380)
Q Consensus 230 ~~~~-VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~ 275 (380)
++++ |||||++++.+|+++|... .++|++|+++|++.+|.+..
T Consensus 211 ~vi~vvDG~D~~ai~~A~~~a~~~---~~~Pt~I~~~T~~g~G~~~~ 254 (663)
T PRK12754 211 HVIRGIDGHDADSIKRAVEEARAV---TDKPSLLMCKTIIGFGSPNK 254 (663)
T ss_pred eEEeeECCCCHHHHHHHHHHHHhc---CCCCEEEEEEeeeccCcccc
Confidence 9999 8999999999999887643 57899999999999998753
|
|
| >TIGR00232 tktlase_bact transketolase, bacterial and yeast | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-27 Score=251.05 Aligned_cols=179 Identities=22% Similarity=0.246 Sum_probs=148.4
Q ss_pred cEEEcc--cccH---HHHHHcCCC-HHHHHHHhhcCCCCCCCCCCCccccCC-CCCCccccCcccccchHHHHHHHHHhh
Q 016903 88 DFVVPQ--YREP---GVLLWRGFS-MQEFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYALK 160 (380)
Q Consensus 88 D~v~~~--yR~~---~~~l~~G~~-~~~~~~e~~g~~~~~~~G~~~~~H~~~-~~~~~~~~~g~lG~~lp~A~G~A~A~k 160 (380)
|.++.+ |... +.+...|+. ..+-+..|+. .|+.+++||.. ..+++...+|++|+|+++|+|+|+|.|
T Consensus 54 DrfvlS~GH~~~~lYa~l~~~G~~~~~e~L~~fr~------~~s~~~ghp~~~~~~gi~~~tG~lG~gl~~AvG~Ala~k 127 (653)
T TIGR00232 54 DRFVLSNGHGSMLLYSLLHLTGYDLSIEDLKQFRQ------LHSKTPGHPEFGHTAGVEATTGPLGQGIANAVGMAIAQK 127 (653)
T ss_pred CeEEEECccHHHHHHHHHHHcCCCCCHHHHHhccc------CCCCCCCCCCCCCCCCeeeCCcchhccHHHHHHHHHHHH
Confidence 765554 4432 234457864 4444556654 37778999976 457888899999999999999999999
Q ss_pred hcC----------CCCeeEEEeCccccCcchHHHHHHHHHHcCCC-EEEEEEcCCcccccccccccCCcCHHHHHhhcCc
Q 016903 161 MDR----------KDACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 161 ~~~----------~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
+.+ .+.+|+|++|||+++||.+|||+++|+.++|| +|+||+||+|++++++.... ..++.+++++|||
T Consensus 128 ~~~~~~~~~~~~~~~~~v~~~~GDG~l~EG~~~EA~~~A~~~~L~nLi~ivd~N~~~i~~~~~~~~-~~~~~~~~~a~Gw 206 (653)
T TIGR00232 128 TLAATFNKPGFEIVDHYTYVFVGDGCLQEGISYEVASLAGHLKLGKLIVLYDSNRISIDGAVDGSF-TEDVAKRFEAYGW 206 (653)
T ss_pred HHhhhccCCccCCcCCEEEEEEccccccccHHHHHHHHHHHhCCCcEEEEEeCCCeeecccccccc-CccHHHHHHhcCC
Confidence 863 37789999999999999999999999999996 99999999999999998876 5789999999999
Q ss_pred eEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCC
Q 016903 230 RSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSD 276 (380)
Q Consensus 230 ~~~~V-dG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~D 276 (380)
++++| ||||+.++.+|+++|.+ ..++|++|+++|+|.+|.+...
T Consensus 207 ~~~~v~DG~D~~ai~~A~~~a~~---~~~~P~~I~~~T~~g~G~~~~e 251 (653)
T TIGR00232 207 EVLEVEDGHDLAAIDAAIEEAKA---SKDKPTLIEVTTTIGFGSPNKA 251 (653)
T ss_pred cEEEeCCCCCHHHHHHHHHHHHh---CCCCCEEEEEEeeecccCcccC
Confidence 99999 99999999988877643 1248999999999999987443
|
This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous. |
| >cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=226.59 Aligned_cols=182 Identities=26% Similarity=0.300 Sum_probs=153.3
Q ss_pred CcEE-Ec-ccccHH---HHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCC-CCccccCcccccchHHHHHHHHHhh
Q 016903 87 DDFV-VP-QYREPG---VLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HNYFTVSSTIATQLPHAVGAAYALK 160 (380)
Q Consensus 87 ~D~v-~~-~yR~~~---~~l~~G~~~~~~~~e~~g~~~~~~~G~~~~~H~~~~~-~~~~~~~g~lG~~lp~A~G~A~A~k 160 (380)
.|.+ ++ .|...+ .+...|+..++-+..+.. .|+.+++|+.... +++...+|++|+++|.|+|+|+|.+
T Consensus 49 rd~~v~s~gH~~~~~ya~l~~~g~~~~~~l~~~~~------~gs~l~gh~~~~~~~g~~~~~GslG~gl~~avG~Ala~~ 122 (255)
T cd02012 49 RDRFVLSKGHASPALYAVLALAGYLPEEDLKTFRQ------LGSRLPGHPEYGLTPGVEVTTGSLGQGLSVAVGMALAEK 122 (255)
T ss_pred CCeEEEcCCcHHHHHHHHHHHcCCCCHHHHHHhcc------cCCCCCCCCCCCCCCCeeeCCcchhhHHHHHHHHHHHHH
Confidence 3543 33 355544 455688766666666643 3667888987644 4778889999999999999999999
Q ss_pred hcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCC-EEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCCCH
Q 016903 161 MDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDA 239 (380)
Q Consensus 161 ~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~ 239 (380)
+.+++++|+|++|||++++|.+||++++|++++|| +++|++||+|++++++.......++++++++|||+++.|||||+
T Consensus 123 ~~~~~~~v~~i~GDG~~~~G~~~eal~~a~~~~l~~li~vvdnN~~~~~~~~~~~~~~~~~~~~~~a~G~~~~~v~G~d~ 202 (255)
T cd02012 123 LLGFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLIAIVDSNRIQIDGPTDDILFTEDLAKKFEAFGWNVIEVDGHDV 202 (255)
T ss_pred HhCCCCEEEEEECcccccccHHHHHHHHHHHcCCCcEEEEEECCCccccCcHhhccCchhHHHHHHHcCCeEEEECCCCH
Confidence 99999999999999999999999999999999995 99999999999998876666778999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCC
Q 016903 240 LAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDD 277 (380)
Q Consensus 240 ~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~Dd 277 (380)
+++.+++++|.+. .++|++|+++|.|..||+..++
T Consensus 203 ~~l~~al~~a~~~---~~~P~~I~~~t~kg~g~~~~e~ 237 (255)
T cd02012 203 EEILAALEEAKKS---KGKPTLIIAKTIKGKGVPFMEN 237 (255)
T ss_pred HHHHHHHHHHHHc---CCCCEEEEEEeecccccCccCC
Confidence 9999999988753 2789999999999999986543
|
In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity. |
| >PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2 | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.9e-28 Score=236.07 Aligned_cols=179 Identities=28% Similarity=0.348 Sum_probs=140.3
Q ss_pred CcEEEcccccHH------HHHHcCC-CHHHHHHHhhcCCCCCCCCCCCccccC-CCCCCccccCcccccchHHHHHHHHH
Q 016903 87 DDFVVPQYREPG------VLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYG-SNKHNYFTVSSTIATQLPHAVGAAYA 158 (380)
Q Consensus 87 ~D~v~~~yR~~~------~~l~~G~-~~~~~~~e~~g~~~~~~~G~~~~~H~~-~~~~~~~~~~g~lG~~lp~A~G~A~A 158 (380)
.|.++.+ .||+ .+...|+ ...+-+..++. .|+.+++||. ...+++..++|+||+|+++|+|+|+|
T Consensus 54 rDrfvlS-kGH~~~~lYa~l~~~G~~~~~~~L~~fr~------~~s~~~gHP~~~~~~gie~stGsLGqGl~~avG~Ala 126 (332)
T PF00456_consen 54 RDRFVLS-KGHASPALYAILALRGYDLSEEDLKTFRQ------LGSRLPGHPEYGKTPGIEASTGSLGQGLSIAVGMALA 126 (332)
T ss_dssp S-EEEES-SGGGHHHHHHHHHHTTSSS-HHHHTTTTS------TTSSSSSSTTTTTSTT-SS--SSTTHHHHHHHHHHHH
T ss_pred CCcEEEe-ccchhHHHHHHHHHhcCCCCHHHHHHhcc------CCCCCCCCCcccCCceeEeeccchhcchhhHHHHHHH
Confidence 4776665 4553 3334787 55555666654 4788999998 45678888999999999999999999
Q ss_pred hhhcC----------CCCeeEEEeCccccCcchHHHHHHHHHHcCC-CEEEEEEcCCcccccccccccCCcCHHHHHhhc
Q 016903 159 LKMDR----------KDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 227 (380)
Q Consensus 159 ~k~~~----------~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~ 227 (380)
.|+.+ .+.+|+|++|||+++||.+|||+.+|+.++| ++|+|+++|+.++++++.... ..++.+++++|
T Consensus 127 ~k~~~~~~n~~~~~~~~~~vy~l~GDGel~EG~~~EA~~~A~~~~L~nLi~i~D~N~~q~dg~~~~~~-~~~~~~k~~a~ 205 (332)
T PF00456_consen 127 EKMLGARFNKPGFDIIDHRVYVLMGDGELQEGSVWEAASLAGHYKLDNLIVIYDSNGIQIDGPTDIVF-SEDIAKKFEAF 205 (332)
T ss_dssp HHHHHHHHHBTTBSTTT--EEEEEEHHHHHSHHHHHHHHHHHHTT-TTEEEEEEEESEETTEEGGGTH-HSHHHHHHHHT
T ss_pred HHHHHhhhcccccccccceEEEEecCccccchhhHHHHHHHHHhCCCCEEEEEecCCcccCCCccccc-chHHHHHHHHh
Confidence 98642 3578999999999999999999999999999 799999999999999987654 46789999999
Q ss_pred CceEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCC
Q 016903 228 GVRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSD 276 (380)
Q Consensus 228 G~~~~~V-dG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~D 276 (380)
||.+++| ||||++++++|+.+|.. ..++|++|.++|...+|.+...
T Consensus 206 Gw~v~~v~dGhd~~~i~~A~~~a~~---~~~kP~~Ii~~TvkG~G~~~~e 252 (332)
T PF00456_consen 206 GWNVIEVCDGHDVEAIYAAIEEAKA---SKGKPTVIIARTVKGKGVPFME 252 (332)
T ss_dssp T-EEEEEEETTBHHHHHHHHHHHHH---STSS-EEEEEEE-TTTTSTTTT
T ss_pred hhhhcccccCcHHHHHHHHHHHHHh---cCCCCceeecceEEecCchhhc
Confidence 9999998 99999999999998865 2479999999999999986554
|
2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A .... |
| >PRK12753 transketolase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-27 Score=250.76 Aligned_cols=180 Identities=22% Similarity=0.212 Sum_probs=151.4
Q ss_pred cEEEc--cccc---HHHHHHcCC-CHHHHHHHhhcCCCCCCCCCCCccccCC-CCCCccccCcccccchHHHHHHHHHhh
Q 016903 88 DFVVP--QYRE---PGVLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYALK 160 (380)
Q Consensus 88 D~v~~--~yR~---~~~~l~~G~-~~~~~~~e~~g~~~~~~~G~~~~~H~~~-~~~~~~~~~g~lG~~lp~A~G~A~A~k 160 (380)
|.++. .|.. .+++...|+ ...+-|..|+. .|+..++|+.. ..+++..++|++|+|+++|+|+|+|.|
T Consensus 58 Drfvls~GH~~~~lYa~l~~~G~~~~~e~L~~fr~------~~s~~~ghp~~~~~pgve~~tG~lG~gl~~AvG~A~A~k 131 (663)
T PRK12753 58 DRFILSNGHASMLLYSLLHLTGYDLPIEELKNFRQ------LHSKTPGHPEIGYTPGVETTTGPLGQGLANAVGLAIAER 131 (663)
T ss_pred CcEEEecccHHHHHHHHHHHhCCCCCHHHHHHhcc------CCCCCCCCCCCCCCCCcccCCCcccccHHHHHHHHHHHH
Confidence 66554 3555 344556785 44455666654 36677889876 357888899999999999999999999
Q ss_pred hcCC----------CCeeEEEeCccccCcchHHHHHHHHHHcCCC-EEEEEEcCCcccccccccccCCcCHHHHHhhcCc
Q 016903 161 MDRK----------DACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 161 ~~~~----------~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
+.+. +.+|+|++|||+++||.+|||+++|+.++|| +|+||+||++++++++.... ..++.+++++|||
T Consensus 132 ~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivd~N~~~i~~~~~~~~-~~~~~~~f~a~Gw 210 (663)
T PRK12753 132 TLAAQFNRPGHEIVDHYTYVFMGDGCLMEGISHEVCSLAGTLGLGKLIGFYDHNGISIDGETEGWF-TDDTAKRFEAYHW 210 (663)
T ss_pred HhhhhcCCccccccCCEEEEEECcCccccHHHHHHHHHHHHHCCCCEEEEEECCCCcCCCChhhhc-ChhHHHHHHHcCC
Confidence 8752 6899999999999999999999999999995 99999999999999988765 5789999999999
Q ss_pred eEEE-EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCC
Q 016903 230 RSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDD 277 (380)
Q Consensus 230 ~~~~-VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~Dd 277 (380)
+++. |||||+.++++++++|.+. .++|++|+++|++.+|++...+
T Consensus 211 ~~~~~vDGhD~~~i~~a~~~a~~~---~~~P~~I~~~T~kG~G~~~~e~ 256 (663)
T PRK12753 211 HVIHEIDGHDPQAIKEAILEAQSV---KDKPSLIICRTIIGFGSPNKAG 256 (663)
T ss_pred eEEceeCCCCHHHHHHHHHHHHHC---CCCeEEEEEEEeecCCCCcccC
Confidence 9995 9999999999999988752 5789999999999999986543
|
|
| >PRK05899 transketolase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-26 Score=246.13 Aligned_cols=185 Identities=25% Similarity=0.250 Sum_probs=153.6
Q ss_pred CcEEEcc--ccc---HHHHHHcCC-CHHHHHHHhhcCCCCCCCCCCCccccCCC-CCCccccCcccccchHHHHHHHHHh
Q 016903 87 DDFVVPQ--YRE---PGVLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYAL 159 (380)
Q Consensus 87 ~D~v~~~--yR~---~~~~l~~G~-~~~~~~~e~~g~~~~~~~G~~~~~H~~~~-~~~~~~~~g~lG~~lp~A~G~A~A~ 159 (380)
.|.++.+ |-. .+++...|+ ..++-+..+.. .|+.++.|+... .+++...+|++|+++|.|+|+|+|.
T Consensus 61 ~Dr~i~s~GH~~~~~Ya~l~~~G~~~~~~~l~~~~~------~~~~~~~~p~~~~~~~~~~~~G~lG~gl~~AiG~Ala~ 134 (624)
T PRK05899 61 RDRFVLSAGHGSMLLYSLLHLAGYDLSIDDLKNFRQ------LGSKTPGHPEYGHTPGVETTTGPLGQGLANAVGMALAE 134 (624)
T ss_pred CCEEEEEChhHHHHHHHHHHHcCCCCCHHHHHHhcC------CCCCCCCCCCCCCCCCeeeCCcchhhhHHHHHHHHHHH
Confidence 4776554 555 345667897 55555666643 245567887753 4677778999999999999999999
Q ss_pred hhcCC----------CCeeEEEeCccccCcchHHHHHHHHHHcCCC-EEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 160 KMDRK----------DACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 160 k~~~~----------~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
++.+. +++|+|++|||++++|.+||+|++|+.++|| +|+|++||+|+++++.... ...++.+++++||
T Consensus 135 ~~~~~~~~~~~~~~~~~~v~~v~GDG~~~~g~~~Eal~~A~~~~L~~li~v~dnN~~~~~~~~~~~-~~~~~~~~~~a~G 213 (624)
T PRK05899 135 KYLAALFNRPGLDIVDHYTYVLCGDGDLMEGISHEACSLAGHLKLGNLIVIYDDNRISIDGPTEGW-FTEDVKKRFEAYG 213 (624)
T ss_pred HHhhhhcCCccccCcCCeEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEECCCCccccccccc-ccccHHHHhccCC
Confidence 98776 7899999999999999999999999999996 9999999999999877643 3578999999999
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCC
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYR 282 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr 282 (380)
|++++|||||+.++.+++++|.+ .++|++|++.|.|.+||+..+++..|+
T Consensus 214 ~~~~~VdG~d~~~l~~al~~a~~----~~~P~vI~v~t~kg~g~~~~e~~~~~H 263 (624)
T PRK05899 214 WHVIEVDGHDVEAIDAAIEEAKA----STKPTLIIAKTIIGKGAPNKEGTHKVH 263 (624)
T ss_pred CeEEEECCCCHHHHHHHHHHHHh----cCCCEEEEEEeEeccCCccccCCCccc
Confidence 99999999999999999998875 368999999999999999777655555
|
|
| >PTZ00089 transketolase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-27 Score=250.50 Aligned_cols=195 Identities=22% Similarity=0.211 Sum_probs=160.6
Q ss_pred CcEEEc--cccc---HHHHHHcCC-CHHHHHHHhhcCCCCCCCCCCCccccCCC-CCCccccCcccccchHHHHHHHHHh
Q 016903 87 DDFVVP--QYRE---PGVLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYAL 159 (380)
Q Consensus 87 ~D~v~~--~yR~---~~~~l~~G~-~~~~~~~e~~g~~~~~~~G~~~~~H~~~~-~~~~~~~~g~lG~~lp~A~G~A~A~ 159 (380)
.|.++. .|.. .+++...|+ ...+-+..+.. .|+..++|+... .+++...+|++|++++.|+|+|+|.
T Consensus 59 rDr~vls~GH~~~~lYa~l~l~G~~~~~~~l~~fr~------~~s~~~ghp~~~~~~gv~~~tG~lG~gls~AvG~A~a~ 132 (661)
T PTZ00089 59 RDRFVLSNGHASALLYSMLHLTGYDLSMEDLKNFRQ------LGSRTPGHPERHITPGVEVTTGPLGQGIANAVGLAIAE 132 (661)
T ss_pred CCEEEEeCcchHHHHHHHHHHcCCCCCHHHHHhcCC------CCCCCCCCCCCCCCCCcccCCcchhhhHHHHHHHHHHH
Confidence 477554 4666 456677886 44555666654 356667898753 5678888999999999999999999
Q ss_pred hhcCC----------CCeeEEEeCccccCcchHHHHHHHHHHcCCC-EEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 160 KMDRK----------DACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 160 k~~~~----------~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
|+.+. +.+|+|++|||+++||.+|||+|+|+.++|| +|+||+||++++++++.... ..++.+++++||
T Consensus 133 k~~~~~~~~~~~~~~~~~v~~v~GDG~l~eG~~~EAl~~A~~~~L~nLi~i~d~N~~~i~~~~~~~~-~~~~~~~f~a~G 211 (661)
T PTZ00089 133 KHLAAKFNRPGHPIFDNYVYVICGDGCLQEGVSQEALSLAGHLGLEKLIVLYDDNKITIDGNTDLSF-TEDVEKKYEAYG 211 (661)
T ss_pred HHHhhhccCccccCcCCEEEEEECccchhhHHHHHHHHHHHHhCCCCEEEEEECCCcccccCccccc-CccHHHHHHhcC
Confidence 98653 7899999999999999999999999999995 99999999999999987653 578999999999
Q ss_pred ceEEEE-eCC-CHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCC---CCCChhhHHHHH
Q 016903 229 VRSIRV-DGN-DALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDST---KYRPVDEIEWWR 291 (380)
Q Consensus 229 ~~~~~V-dG~-D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~---~Yr~~~e~~~~~ 291 (380)
|+++.| ||| |+.++++++++|.+. .++|++|+++|+|.+||...+... .+.+++|++.++
T Consensus 212 ~~~i~v~dG~~D~~~l~~a~~~a~~~---~~~P~~I~~~T~kG~G~~~e~~~~~H~~~~~~~~~~~~~ 276 (661)
T PTZ00089 212 WHVIEVDNGNTDFDGLRKAIEEAKKS---KGKPKLIIVKTTIGYGSSKAGTEKVHGAPLGDEDIAQVK 276 (661)
T ss_pred CcEEEeCCCCCCHHHHHHHHHHHHhc---CCCcEEEEEEeeecCCCCcCCCCCccCCCCCHHHHHHHH
Confidence 999999 999 999999999988753 368999999999999986655322 356677777765
|
|
| >cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-27 Score=216.18 Aligned_cols=167 Identities=19% Similarity=0.193 Sum_probs=137.5
Q ss_pred CCcEEEcc--cccHHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCC-CCccccCcccccchHHHHHHHHHhhhc
Q 016903 86 NDDFVVPQ--YREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HNYFTVSSTIATQLPHAVGAAYALKMD 162 (380)
Q Consensus 86 ~~D~v~~~--yR~~~~~l~~G~~~~~~~~e~~g~~~~~~~G~~~~~H~~~~~-~~~~~~~g~lG~~lp~A~G~A~A~k~~ 162 (380)
+.|.++.+ |...+++...|. ++-+.++.. .|+ +++|+.... +++..++|++|+++|+|+|+|+|.|++
T Consensus 24 ~rDr~ils~gH~~~~~~~~~g~--~~~l~~~~~------~~~-~~g~p~~~~~~~~~~~~G~lG~gl~~A~G~Ala~k~~ 94 (195)
T cd02007 24 PKDKIIWDVGHQAYPHKILTGR--RDQFHTLRQ------YGG-LSGFTKRSESEYDAFGTGHSSTSISAALGMAVARDLK 94 (195)
T ss_pred CCCeEEEecccHHHHHHHHHCC--HHHHhhhhc------CCC-CCCCCcCCCCCCceECCCchhhhHHHHHHHHHHHHHh
Confidence 34655543 555455555665 344555653 244 888876543 566778999999999999999999999
Q ss_pred CCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEE-EeCCCHHH
Q 016903 163 RKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIR-VDGNDALA 241 (380)
Q Consensus 163 ~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~-VdG~D~~a 241 (380)
+.+++|+|++|||+++||++||++++|+.+++|+|+||+||+|++++++. +..++++++||.... |||||+++
T Consensus 95 ~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~vvdnN~~~~~~~~~------~~~~~~~a~G~~~~~~vdG~d~~~ 168 (195)
T cd02007 95 GKKRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVILNDNEMSISPNVG------TPGNLFEELGFRYIGPVDGHNIEA 168 (195)
T ss_pred CCCCeEEEEEcccccccChHHHHHHHHHHhCCCEEEEEECCCcccCCCCC------CHHHHHHhcCCCccceECCCCHHH
Confidence 99999999999999999999999999999988999999999999987765 477889999999996 99999999
Q ss_pred HHHHHHHHHHHhhccCCcEEEEEEeecCCC
Q 016903 242 IYSAVHAAREMAIGEGRPILIEALTYRVGH 271 (380)
Q Consensus 242 v~~a~~~a~~~ar~~~gP~lIe~~t~R~~g 271 (380)
+.+++++|.+ .++|++|+++|.+.+|
T Consensus 169 l~~a~~~a~~----~~~P~~I~~~T~kg~g 194 (195)
T cd02007 169 LIKVLKEVKD----LKGPVLLHVVTKKGKG 194 (195)
T ss_pred HHHHHHHHHh----CCCCEEEEEEEecccC
Confidence 9999887653 5799999999998765
|
Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6). |
| >cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-26 Score=225.89 Aligned_cols=184 Identities=18% Similarity=0.122 Sum_probs=152.9
Q ss_pred HhcCCC------CcEEEc-cccc---HHHHHHcCCCHHHHHHHhhcCCCCCCCCC--CCccccCCC-CC-CccccCcccc
Q 016903 81 AAAIKN------DDFVVP-QYRE---PGVLLWRGFSMQEFANQCFGNKADYGKGR--QMPIHYGSN-KH-NYFTVSSTIA 146 (380)
Q Consensus 81 ~~~l~~------~D~v~~-~yR~---~~~~l~~G~~~~~~~~e~~g~~~~~~~G~--~~~~H~~~~-~~-~~~~~~g~lG 146 (380)
...|+. .|.|++ .|.. ++++...|+...+-+..|+.. |+ +++.|+... .+ ++..++|++|
T Consensus 48 ~~~l~~~p~~~~RDRvlSkGHas~~lYA~L~l~G~~~~edL~~fr~~------gs~p~l~g~p~~~~~~~gve~sTGSLG 121 (386)
T cd02017 48 NHFFRARGEGGGGDLVYFQGHASPGIYARAFLEGRLTEEQLDNFRQE------VGGGGLSSYPHPWLMPDFWEFPTVSMG 121 (386)
T ss_pred HHhcCCCCCCCCCCEEEeCCcccHHHHHHHHHcCCCCHHHHHhhccC------CCCCCCCCCCCCCCCCCCeeeCCchHH
Confidence 346764 688665 3444 244566897655667777653 44 577777543 23 4788899999
Q ss_pred cchHHHHHHHHHhhh-------cCCCCeeEEEeCccccCcchHHHHHHHHHHcCC-CEEEEEEcCCcccccccccc-cCC
Q 016903 147 TQLPHAVGAAYALKM-------DRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQ-FRS 217 (380)
Q Consensus 147 ~~lp~A~G~A~A~k~-------~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~~~~~~~~~~~-~~~ 217 (380)
+|+++|+|+|+|.|+ .+.+.+|+|++|||+++||.+||++++|+.++| |+|+||++|++++++++... ...
T Consensus 122 qGLs~AvGmAla~r~l~a~~~~~~~~~rvyvllGDGEl~EG~vwEA~~~Ag~~kL~NLivIvD~N~~qidG~t~~v~~~~ 201 (386)
T cd02017 122 LGPIQAIYQARFNRYLEDRGLKDTSDQKVWAFLGDGEMDEPESLGAIGLAAREKLDNLIFVVNCNLQRLDGPVRGNGKII 201 (386)
T ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcccccccHHHHHHHHHHHHhCCCCEEEEEECCCCccCCcccccccCc
Confidence 999999999999998 556789999999999999999999999999999 89999999999999998875 356
Q ss_pred cCHHHHHhhcCceEEEEe--------------------------------------------------------------
Q 016903 218 DGAVVKGRAYGVRSIRVD-------------------------------------------------------------- 235 (380)
Q Consensus 218 ~~~~~~a~a~G~~~~~Vd-------------------------------------------------------------- 235 (380)
.++.+++++|||.++.||
T Consensus 202 e~l~~kf~AfGW~vi~V~~g~~~~~~f~~~gg~~l~~~~~~~~~~~~~~l~~~~~~~~r~~l~~~~~~~~~~~~~~~d~~ 281 (386)
T cd02017 202 QELEGIFRGAGWNVIKVIWGSKWDELLAKDGGGALRQRMEETVDGDYQTLKAKDGAYVREHFFGKYPELKALVTDLSDED 281 (386)
T ss_pred hhHHHHHHhcCCEEEEEecCCcchhhhccCcchHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHHHHhhcccHHh
Confidence 799999999999999998
Q ss_pred -------CCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCC
Q 016903 236 -------GNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHT 273 (380)
Q Consensus 236 -------G~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs 273 (380)
|||+.++++|+.++.+. .++|++|.++|...+|.+
T Consensus 282 ~~~~~~gGhD~~~i~~A~~~a~~~---~~kPt~Iia~TikG~G~~ 323 (386)
T cd02017 282 LWALNRGGHDPRKVYAAYKKAVEH---KGKPTVILAKTIKGYGLG 323 (386)
T ss_pred hhhhccCCCCHHHHHHHHHHHHhC---CCCCeEEEEeCeecCCCC
Confidence 99999999999988753 468999999999999976
|
coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme. |
| >PLN02790 transketolase | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-26 Score=242.81 Aligned_cols=183 Identities=22% Similarity=0.214 Sum_probs=151.9
Q ss_pred CCcEEEcc--ccc---HHHHHHcCC--CHHHHHHHhhcCCCCCCCCCCCccccCC-CCCCccccCcccccchHHHHHHHH
Q 016903 86 NDDFVVPQ--YRE---PGVLLWRGF--SMQEFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAY 157 (380)
Q Consensus 86 ~~D~v~~~--yR~---~~~~l~~G~--~~~~~~~e~~g~~~~~~~G~~~~~H~~~-~~~~~~~~~g~lG~~lp~A~G~A~ 157 (380)
+.|.++.+ |.. .+++...|+ -..+-+..++. .|+..++|+.. ..+++...+|++|+++++|+|+|+
T Consensus 46 ~rDrfvls~GH~~~~lYa~l~~~G~~~~~~~~l~~~r~------~~s~~~ghp~~~~~pgi~~~tG~lG~gl~~A~G~A~ 119 (654)
T PLN02790 46 NRDRFVLSAGHGCMLQYALLHLAGYDSVQMEDLKQFRQ------WGSRTPGHPENFETPGIEVTTGPLGQGIANAVGLAL 119 (654)
T ss_pred CCCEEEEeCcchHHHHHHHHHHcCCCCCCHHHHHHhcc------CCCCCCCCCCCCCCCCccccCCchhchHHHHHHHHH
Confidence 35777664 655 456667887 23444666654 36667789875 457889999999999999999999
Q ss_pred Hhhh-----cCC-----CCeeEEEeCccccCcchHHHHHHHHHHcCCC-EEEEEEcCCcccccccccccCCcCHHHHHhh
Q 016903 158 ALKM-----DRK-----DACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 158 A~k~-----~~~-----~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a 226 (380)
|.|+ +++ +.+|+|++|||++++|.+|||+|+|+.++|| +|+||+||++++++++.... ..++.+++++
T Consensus 120 A~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~~i~~~~~~~~-~~~~~~~f~a 198 (654)
T PLN02790 120 AEKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEAASLAGHWGLGKLIVLYDDNHISIDGDTEIAF-TEDVDKRYEA 198 (654)
T ss_pred HHHHHHHHhCCCcccccCCEEEEEECcCcccchHHHHHHHHHHHhCCCCEEEEEecCCccccCCccccc-chhHHHHHHH
Confidence 9995 342 6899999999999999999999999999995 99999999999999988654 5688999999
Q ss_pred cCceEEEEeC--CCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCC
Q 016903 227 YGVRSIRVDG--NDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDS 278 (380)
Q Consensus 227 ~G~~~~~VdG--~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~ 278 (380)
|||+++.||| ||++++++++++|.+. .++|++|+++|++.+|.+...++
T Consensus 199 ~G~~~~~vdgg~hd~~~l~~a~~~a~~~---~~~P~lI~~~T~kG~G~~~~e~~ 249 (654)
T PLN02790 199 LGWHTIWVKNGNTDYDEIRAAIKEAKAV---TDKPTLIKVTTTIGYGSPNKANS 249 (654)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHhc---CCCeEEEEEEEeecCCCccccCC
Confidence 9999999988 8999999999888652 57999999999999998755443
|
|
| >PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-26 Score=240.83 Aligned_cols=240 Identities=19% Similarity=0.197 Sum_probs=176.7
Q ss_pred CeeEEeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhhHHHHHHHhcCC-CCcEEE
Q 016903 13 PCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-NDDFVV 91 (380)
Q Consensus 13 ~~~~~~~~~g~~~~~~~~~~~~~e~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~G~Ea~~~~~~~~l~-~~D~v~ 91 (380)
++|.+|+ ++-+|.|.++++.++|.++-.. +|.+.++.. .. ..|.++--.++. |... .+-..++ +.|.++
T Consensus 2 ~~~~~~~---~~~~~~~~~~~~~~~l~~~a~~-iR~~~~~~~--~~-~~gH~g~~ls~~--~i~~-~L~~~~~~~rDr~i 71 (580)
T PRK05444 2 PKYPLLD---TINSPADLKKLSEEELPQLADE-IREFLIDVV--SK-TGGHLGSNLGVV--ELTV-ALHYVFDTPKDRII 71 (580)
T ss_pred CCCchhh---ccCCHHHHhcCCHHHHHHHHHH-HHHHHHHHH--Hh-cCCCcCCCccHH--HHHH-HHHHhcCCCCccEE
Confidence 4455565 3334556788888887665333 344444433 22 356554332222 3332 3333454 457666
Q ss_pred cc--cccHHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCC-CCccccCcccccchHHHHHHHHHhhhc-CCCCe
Q 016903 92 PQ--YREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HNYFTVSSTIATQLPHAVGAAYALKMD-RKDAC 167 (380)
Q Consensus 92 ~~--yR~~~~~l~~G~~~~~~~~e~~g~~~~~~~G~~~~~H~~~~~-~~~~~~~g~lG~~lp~A~G~A~A~k~~-~~~~~ 167 (380)
.+ |...+++...|. .+.+..++. .|+ +++|+.... +++...+|++|+++|+|+|+|+|.|++ +++++
T Consensus 72 ls~GH~~y~~~~~~g~--~~~l~~~~~------~~s-~~g~p~~~~~~~~~~~~G~lG~gl~~AvG~A~a~~~~~~~~~~ 142 (580)
T PRK05444 72 WDVGHQAYPHKILTGR--RDRFDTLRQ------KGG-LSGFPKRSESEYDTFGAGHSSTSISAALGMAKARDLKGGEDRK 142 (580)
T ss_pred EeccHHHHHHHHHhCc--HHHhcCccc------CCC-CCCCCCCCCCCCeeECCChHHHHHHHHHHHHHHHHhhCCCCCe
Confidence 53 666666677886 233444443 244 678987643 678888999999999999999999998 58899
Q ss_pred eEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccc---cCCcCHHHHHhhcCceEE-EEeCCCHHHHH
Q 016903 168 AVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQ---FRSDGAVVKGRAYGVRSI-RVDGNDALAIY 243 (380)
Q Consensus 168 vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~---~~~~~~~~~a~a~G~~~~-~VdG~D~~av~ 243 (380)
|+|++|||+++||++||++++|+++++|+|+|++||+|++++++... ....++.+++++|||+++ .|||||+++++
T Consensus 143 v~~i~GDG~l~eG~~~Eal~~A~~~~~nli~IvdnN~~~i~~~~~~~~~~~~~~~~~~~~~a~G~~~~~~vdG~d~~~l~ 222 (580)
T PRK05444 143 VVAVIGDGALTGGMAFEALNNAGDLKSDLIVILNDNEMSISPNVGALSNYLARLRSSTLFEELGFNYIGPIDGHDLDALI 222 (580)
T ss_pred EEEEEcccccccCHHHHHHHHHHhhCCCEEEEEECCCCcCCCcchhhhhhhccccHHHHHHHcCCCeeeeeCCCCHHHHH
Confidence 99999999999999999999999999999999999999998877543 233567789999999999 59999999999
Q ss_pred HHHHHHHHHhhccCCcEEEEEEeecCCCCCCC
Q 016903 244 SAVHAAREMAIGEGRPILIEALTYRVGHHTTS 275 (380)
Q Consensus 244 ~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~ 275 (380)
++++++.+ .++|++|+++|.|.+|.+..
T Consensus 223 ~al~~a~~----~~~P~lI~~~T~kg~G~~~~ 250 (580)
T PRK05444 223 ETLKNAKD----LKGPVLLHVVTKKGKGYAPA 250 (580)
T ss_pred HHHHHHHh----CCCCEEEEEEecCCcCCChh
Confidence 99887664 47999999999999997654
|
|
| >TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-25 Score=236.79 Aligned_cols=229 Identities=17% Similarity=0.182 Sum_probs=171.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhhHHHHHHHhcCC-CCcEEEc--ccccHHHHHHc
Q 016903 27 DSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-NDDFVVP--QYREPGVLLWR 103 (380)
Q Consensus 27 ~~~~~~~~~e~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~G~Ea~~~~~~~~l~-~~D~v~~--~yR~~~~~l~~ 103 (380)
|.|.++++.++|.++-.. +|.+.++.. . ...|.++ +++|---+.+++-..++ +.|.++. .|...++++..
T Consensus 7 p~dl~~l~~~~l~~la~~-iR~~~i~~~--~-~~~GH~g---~~ls~vel~~aL~~~~~~~rDr~i~s~GH~~Y~~~~~~ 79 (617)
T TIGR00204 7 PQELRLLSIDELEKLCDE-LRRYLLESV--S-ASGGHLA---SGLGTVELTVALHYVFNTPKDQFIWDVGHQAYPHKLLT 79 (617)
T ss_pred HHHHhhCCHHHHHHHHHH-HHHHHHHHH--h-ccCCCcC---cchhHHHHHHHHHhhCCCCCCcEEEecchHHHHHHHHh
Confidence 445678888887665444 344444432 2 2344443 34443333445555666 5677766 47777888889
Q ss_pred CCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcc-ccCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchH
Q 016903 104 GFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYF-TVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDF 182 (380)
Q Consensus 104 G~~~~~~~~e~~g~~~~~~~G~~~~~H~~~~~~~~~-~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~ 182 (380)
|+ .+-|..++. .|+ +++|+...+++.. ..+|++|+++++|+|+|+|.|+++.+.+|+|++|||++++|.+
T Consensus 80 G~--~~~l~~~r~------~g~-l~g~p~~~e~~~d~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~~~GDG~~~eG~~ 150 (617)
T TIGR00204 80 GR--REKFSTLRQ------KKG-LHGFPKRSESEYDVFSAGHSSTSISAGLGIAVAAEKKGADRKTVCVIGDGAITAGMA 150 (617)
T ss_pred Cc--HHHhcchhh------cCC-cCCCCcCCCCCCCccCCCchHhHHHHHHHHHHHHHhhCCCCEEEEEECCcccccccH
Confidence 97 344556654 244 8889876555554 4799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCEEEEEEcCCcccccccccccC------------------------Cc---C-HHHH-----------
Q 016903 183 HAALNFSAVTEAPVIFICRNNGWAISTPISDQFR------------------------SD---G-AVVK----------- 223 (380)
Q Consensus 183 ~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~------------------------~~---~-~~~~----------- 223 (380)
|||+|+|+.++||+|+||+||++++++++..... .+ + +.++
T Consensus 151 ~Ea~~~a~~~~l~~i~ii~~N~~~i~~~~~~~~~~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ 230 (617)
T TIGR00204 151 FEALNHAGDLKTDMIVILNDNEMSISENVGALSNHLAQLRSGSLYQSLRDGLKKIFSKLPPIKNYLAKRTEESMKGLVVP 230 (617)
T ss_pred HHHHHHHHhcCCCEEEEEECCCcccCCCchHHHHHHHHhhccchHHHHHHHHHHHHhcCcchhHHHHHHHHHhhhhccCc
Confidence 9999999999999999999999999987753210 01 1 3344
Q ss_pred ---HhhcCceEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCC
Q 016903 224 ---GRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS 275 (380)
Q Consensus 224 ---a~a~G~~~~-~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~ 275 (380)
+++|||.++ .|||||+.++.++++.+.+ .++|++|+++|.|..|-+..
T Consensus 231 ~~~f~~~G~~~~~~vDGhd~~~l~~al~~ak~----~~~P~~i~~~T~KGkG~~~~ 282 (617)
T TIGR00204 231 GTFFEELGFNYIGPVDGHDLLELIETLKNAKK----LKGPVFLHIQTKKGKGYKPA 282 (617)
T ss_pred cchHHHcCCcEEcccCCCCHHHHHHHHHHHhc----CCCCEEEEEEecCCCCCchh
Confidence 899999999 8999999999999986653 57899999999999885543
|
DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP). |
| >TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.9e-24 Score=226.54 Aligned_cols=230 Identities=19% Similarity=0.224 Sum_probs=169.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh----cCCcccccccchhhHHHHHHHhcCCC------CcEEEcc-cccHH---HH
Q 016903 35 EGVAIKMYNDMVTLQTMDTIFYEAQR----QGRISFYLTTSGEEAINIASAAAIKN------DDFVVPQ-YREPG---VL 100 (380)
Q Consensus 35 ~e~l~~~y~~M~~~R~~e~~~~~~~~----~g~i~~~~~~~G~Ea~~~~~~~~l~~------~D~v~~~-yR~~~---~~ 100 (380)
+.++.+..+..+|-..++........ .|.++...++. +...+.....|+. .|.|++. |-..+ .+
T Consensus 71 d~~~e~~i~~~iR~~ai~MV~~A~~~~~~vgGHigsslS~a--dIl~vLy~~~lr~~~~~~~rD~VlSKGHasp~lYA~L 148 (885)
T TIGR00759 71 DLELERRIRSIIRWNAIAMVLRANKKDLGLGGHISTYASAA--TLYEVGFNHFFRGHSEGGGGDLVFFQGHAAPGIYARA 148 (885)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcCCcHHHH--HHHHHHHHHhcCCCCCCCCCCEEEECCcHHHHHHHHH
Confidence 34455555555554444433221101 23333322222 3344444445663 6876662 33322 34
Q ss_pred HHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCC-CC-ccccCcccccchHHHHHHHHHhhh-------cCCCCeeEEE
Q 016903 101 LWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HN-YFTVSSTIATQLPHAVGAAYALKM-------DRKDACAVTY 171 (380)
Q Consensus 101 l~~G~~~~~~~~e~~g~~~~~~~G~~~~~H~~~~~-~~-~~~~~g~lG~~lp~A~G~A~A~k~-------~~~~~~vv~~ 171 (380)
...|+..++-+..|+... .|+++++|+.... ++ +..++|+||.|+++|+|+|++.|+ +..+++|+|+
T Consensus 149 ~l~G~ls~e~L~~FRq~~----~g~gL~shPhp~~~p~~ve~sTGSLG~Gls~AvG~Ala~Kyl~~rg~~~~~~~rVyvl 224 (885)
T TIGR00759 149 FLEGRLTEEQLDNFRQEV----QGDGLSSYPHPWLMPDFWQFPTVSMGLGPINAIYQARFMKYLENRGLKDTGDQKVWAF 224 (885)
T ss_pred HHcCCCCHHHHHHhcCCC----CCCCCCCCCCcCcCCCCEEeCCCCccHHHHHHHHHHHHHHHHHhhccCCCCCceEEEE
Confidence 458977777777776421 2667888876432 44 677899999999999999999996 5678899999
Q ss_pred eCccccCcchHHHHHHHHHHcCC-CEEEEEEcCCcccccccccccC-CcCHHHHHhhcCceEEEE---------------
Q 016903 172 FGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFR-SDGAVVKGRAYGVRSIRV--------------- 234 (380)
Q Consensus 172 ~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~~~~~~~~~~~~~-~~~~~~~a~a~G~~~~~V--------------- 234 (380)
+|||+++||.+|||+.+|++++| |+|+||++|..++++++..... ..++.++++++||++++|
T Consensus 225 lGDGEldEG~swEA~~~Aa~~kLdNLi~IVD~N~~qlDG~v~~~~~i~e~le~~F~a~GW~Vi~V~wg~~wd~lf~~d~~ 304 (885)
T TIGR00759 225 LGDGEMDEPESKGAITFAAREKLDNLTFVINCNLQRLDGPVRGNGKIIQELESLFRGAGWNVIKVLWGSEWDALLARDTS 304 (885)
T ss_pred EcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCccccccccchhHHHHHHhcCCEEEEEecCccchHhhcCCCc
Confidence 99999999999999999999999 8999999999999999987544 568999999999999999
Q ss_pred ------------------------------------------------------eCCCHHHHHHHHHHHHHHhhccCCcE
Q 016903 235 ------------------------------------------------------DGNDALAIYSAVHAAREMAIGEGRPI 260 (380)
Q Consensus 235 ------------------------------------------------------dG~D~~av~~a~~~a~~~ar~~~gP~ 260 (380)
+|||+.+|++|++.|.+. .++|+
T Consensus 305 g~L~~~m~~~~dg~yq~~~~~~Ga~~R~~ffg~~~~l~~lv~~~sD~~i~~l~rgGHD~~~I~~A~~~A~~~---~grPT 381 (885)
T TIGR00759 305 GVLVKLMNETVDGDYQTYKAKDGAYVREHFFNRTPELKALVADMSDADIWALNRGGHDPRKVYAAYAAAQEH---KGQPT 381 (885)
T ss_pred cHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHHHHhhccchhhhhhccCCCCCHHHHHHHHHHHHhC---CCCCE
Confidence 599999999999988764 45899
Q ss_pred EEEEEeecCCCCC
Q 016903 261 LIEALTYRVGHHT 273 (380)
Q Consensus 261 lIe~~t~R~~gHs 273 (380)
+|.++|.+.+|.+
T Consensus 382 vIlA~TvKG~G~~ 394 (885)
T TIGR00759 382 VILAKTIKGYGMG 394 (885)
T ss_pred EEEEeeeecCCCC
Confidence 9999999999976
|
WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity. |
| >PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.2e-24 Score=226.02 Aligned_cols=242 Identities=19% Similarity=0.212 Sum_probs=172.7
Q ss_pred CeeEEeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhhHHHHHHHhcCC-CCcEEE
Q 016903 13 PCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-NDDFVV 91 (380)
Q Consensus 13 ~~~~~~~~~g~~~~~~~~~~~~~e~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~G~Ea~~~~~~~~l~-~~D~v~ 91 (380)
|.+.+|+ +.-.|.|.++++.++|.++-.. +|.+.++... .. .|.++ +++|---+.+++...++ +.|.++
T Consensus 4 ~~~~~l~---~i~~p~dl~~l~~~~l~~~a~~-iR~~ii~~~~--~~-~GH~g---~~ls~vel~~aL~~~~~~prDr~i 73 (641)
T PRK12571 4 PKTPLLD---RIKGPADLRALSDAELEQLADE-LRAEVISAVS--ET-GGHLG---SSLGVVELTVALHAVFNTPKDKLV 73 (641)
T ss_pred CCCChhh---hcCCHHHHHhCCHHHHHHHHHH-HHHHHHHHHH--Hh-CCCcC---CCchHHHHHHHHHHhcCCCCCcEE
Confidence 3344565 3334556788888887766443 3444444332 22 35543 33333323344444554 568776
Q ss_pred c--ccccHHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCC-CCccccCcccccchHHHHHHHHHhhhcCCCCee
Q 016903 92 P--QYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HNYFTVSSTIATQLPHAVGAAYALKMDRKDACA 168 (380)
Q Consensus 92 ~--~yR~~~~~l~~G~~~~~~~~e~~g~~~~~~~G~~~~~H~~~~~-~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~v 168 (380)
. .|...++++..|. .+-|..++.. |+ +++|+...+ ++.....++-++++++|+|+|+|.++.+++++|
T Consensus 74 ~s~GH~~Y~~~~l~g~--~~~l~~~r~~------~~-l~g~p~~~e~~~~~~~~g~~~gslg~a~G~A~a~~~~~~~~~v 144 (641)
T PRK12571 74 WDVGHQCYPHKILTGR--RDRFRTLRQK------GG-LSGFTKRSESEYDPFGAAHSSTSISAALGFAKARALGQPDGDV 144 (641)
T ss_pred EECchHHHHHHHHhCC--HHHHhhhhhC------CC-cCCCCCCCcCCCCCcccCCCcChHHHHHHHHHHHHHhCCCCeE
Confidence 6 4777778888886 4556666642 43 677776543 232233455577789999999999999999999
Q ss_pred EEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccc-------cccCCcCH---------------------
Q 016903 169 VTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPIS-------DQFRSDGA--------------------- 220 (380)
Q Consensus 169 v~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~-------~~~~~~~~--------------------- 220 (380)
+|++|||++++|.+||++++|+++++|+++|++||++++++++. +......+
T Consensus 145 ~~v~GDG~~~eG~~~Eal~~a~~~~~~li~I~dnN~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (641)
T PRK12571 145 VAVIGDGSLTAGMAYEALNNAGAADRRLIVILNDNEMSIAPPVGALAAYLSTLRSSDPFARLRAIAKGVEERLPGPLRDG 224 (641)
T ss_pred EEEEeCchhhcchHHHHHHHHHHhCCCEEEEEECCCeeecCCccHHHHHHHHHhcCcchHHHHHHHHHHHhhcchhHHHH
Confidence 99999999999999999999999999999999999999998874 21112111
Q ss_pred --------------HHHHhhcCceEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCC
Q 016903 221 --------------VVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSD 276 (380)
Q Consensus 221 --------------~~~a~a~G~~~~-~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~D 276 (380)
.+++++|||.++ .|||||+.++.++++++.+. .++|++|.++|.+.+|.+...
T Consensus 225 ~~~~~~~~~~~~~~~~~f~a~G~~~~~~vdGhd~~~l~~al~~ak~~---~~~P~~I~~~T~kGkG~~~~e 292 (641)
T PRK12571 225 ARRARELVTGMIGGGTLFEELGFTYVGPIDGHDMEALLSVLRAARAR---ADGPVLVHVVTEKGRGYAPAE 292 (641)
T ss_pred HHHHHHhhhhccchhhHHHHcCCEEECccCCCCHHHHHHHHHHHHhC---CCCCEEEEEEecCccCcchhh
Confidence 478999999999 79999999999999887642 378999999999999987543
|
|
| >TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.7e-23 Score=222.46 Aligned_cols=231 Identities=18% Similarity=0.193 Sum_probs=168.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh----cCCcccccccchhhHHHHHHHhcCCC------CcEEEcc-cccHH---HH
Q 016903 35 EGVAIKMYNDMVTLQTMDTIFYEAQR----QGRISFYLTTSGEEAINIASAAAIKN------DDFVVPQ-YREPG---VL 100 (380)
Q Consensus 35 ~e~l~~~y~~M~~~R~~e~~~~~~~~----~g~i~~~~~~~G~Ea~~~~~~~~l~~------~D~v~~~-yR~~~---~~ 100 (380)
+.++.+-....+|...++........ .|.++...++. +...+.....|+. +|+|++. |-..+ .+
T Consensus 71 d~~~~~~~a~~iR~~a~~mv~~A~~~~~~~gGH~gs~lS~a--~i~~vLy~~~lr~~~~~~~rD~VlskGHasp~lYA~l 148 (889)
T TIGR03186 71 DLQLEERLAAILRWNALAMVVRANRAYGELGGHIASYASAA--DLFEVGFNHFFRAAGDASGGDLVYFQPHSAPGVYARA 148 (889)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcCcHHHH--HHHHHHHHHhCCCCCCCCCCCEEEECCchHHHHHHHH
Confidence 44455555555555555443322211 24443332222 4444455456663 6876663 44433 33
Q ss_pred HHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCC-CC-CccccCcccccchHHHHHHHHHhhhc-------CCCCeeEEE
Q 016903 101 LWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSN-KH-NYFTVSSTIATQLPHAVGAAYALKMD-------RKDACAVTY 171 (380)
Q Consensus 101 l~~G~~~~~~~~e~~g~~~~~~~G~~~~~H~~~~-~~-~~~~~~g~lG~~lp~A~G~A~A~k~~-------~~~~~vv~~ 171 (380)
...|+..++-+..|+... .|++++.|+... .+ ++..++|+||+|+++|+|+|++.|+. ..+.+|+|+
T Consensus 149 ~l~G~l~~e~L~~fRq~~----~~~gl~~~phP~~~p~~ve~sTGSLGqGl~~AvG~Ala~kyl~~r~~~~~~~~rVy~l 224 (889)
T TIGR03186 149 FLEGFLSDAQLAHYRQEI----AGPGLCSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQNRGLARTEGRKVWGF 224 (889)
T ss_pred HHcCCCCHHHHHHhcCCC----CCCCCCCCCCcccCCCCeEcCCCCchHHHHHHHHHHHHHHHHhhccccCCCCceEEEE
Confidence 457976666677776431 245566654332 24 46778999999999999999998843 236899999
Q ss_pred eCccccCcchHHHHHHHHHHcCC-CEEEEEEcCCcccccccccccC-CcCHHHHHhhcCceEEEE---------------
Q 016903 172 FGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFR-SDGAVVKGRAYGVRSIRV--------------- 234 (380)
Q Consensus 172 ~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~~~~~~~~~~~~~-~~~~~~~a~a~G~~~~~V--------------- 234 (380)
+|||+++||.+|||+.+|++++| |+|+||++|..++++++..... ..++.+++++|||++++|
T Consensus 225 lGDGEl~EG~~wEA~~~Aa~~kLdNLi~IvD~N~~qlDG~t~~~~~~~e~l~~kf~a~GW~vi~v~wG~~wd~l~~~d~~ 304 (889)
T TIGR03186 225 FGDGEMDEPESIGALSLAARERLDNLVFVINCNLQRLDGPVRGNGRIIDELESQFAGAGWNVIKVLWGSDWDALFARDAT 304 (889)
T ss_pred EcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCccccccccchHHHHHHHhCCCEEEEEeecCchHHhhccccc
Confidence 99999999999999999999999 8999999999999999887443 578999999999999999
Q ss_pred ------------------------------------------------------eCCCHHHHHHHHHHHHHHhhccCCcE
Q 016903 235 ------------------------------------------------------DGNDALAIYSAVHAAREMAIGEGRPI 260 (380)
Q Consensus 235 ------------------------------------------------------dG~D~~av~~a~~~a~~~ar~~~gP~ 260 (380)
+|||+.+|++|+++|.+. .++|+
T Consensus 305 ~~L~~~~~~~~dg~yq~~~~~~ga~~R~~ff~~~~~~~~lv~~~sD~~i~~l~rgGHD~~~i~~A~~~A~~~---~~~PT 381 (889)
T TIGR03186 305 GALARAFAHTVDGQFQTFSANDGAYNRARFFGQDPALAALVAHLSDEDIDRLRRGGHDARKLYAAYDRAVRH---EGRPT 381 (889)
T ss_pred hHHHHHHHhcccHHHHHHhhcchHHHHHHhcCccHHHHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhC---CCCCE
Confidence 699999999999999864 46899
Q ss_pred EEEEEeecCCCCCC
Q 016903 261 LIEALTYRVGHHTT 274 (380)
Q Consensus 261 lIe~~t~R~~gHs~ 274 (380)
+|.++|...+|-+.
T Consensus 382 vIla~TvkG~G~~~ 395 (889)
T TIGR03186 382 VILAKTMKGFGMGA 395 (889)
T ss_pred EEEEEeeecCCCCc
Confidence 99999999998644
|
Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component. |
| >PLN02234 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=220.56 Aligned_cols=198 Identities=14% Similarity=0.128 Sum_probs=153.8
Q ss_pred ccchhhHHHHHHHhcCC-CCcEEEcc--cccHHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCC-CCccccCcc
Q 016903 69 TTSGEEAINIASAAAIK-NDDFVVPQ--YREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HNYFTVSST 144 (380)
Q Consensus 69 ~~~G~Ea~~~~~~~~l~-~~D~v~~~--yR~~~~~l~~G~~~~~~~~e~~g~~~~~~~G~~~~~H~~~~~-~~~~~~~g~ 144 (380)
++.|---+.+++-..|+ |.|.++.. |-..++.+..|.. +-|..++. .|+ +++|+...+ ++....+|+
T Consensus 108 ssLs~vEl~~aL~~vf~~p~DriI~s~GHqaya~~~ltgr~--~~l~t~r~------~gg-l~G~p~~~es~~d~~~tGs 178 (641)
T PLN02234 108 SNLGVVELTVALHYIFNTPHDKILWDVGHQSYPHKILTGRR--GKMKTIRQ------TNG-LSGYTKRRESEHDSFGTGH 178 (641)
T ss_pred ccchHHHHHHHHHHhcCCCCCeEEEecchhHHHHHHHHhhh--hhhccccc------CCC-cCCCCCCCCCCCcEECCCc
Confidence 44444434455555565 77888774 7777777777762 23444443 243 788887543 578888999
Q ss_pred cccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcc------cccccccccCC-
Q 016903 145 IATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWA------ISTPISDQFRS- 217 (380)
Q Consensus 145 lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~------~~~~~~~~~~~- 217 (380)
+|+++++|+|+|+|.++++.+..|||++|||++++|++|||||.|+..+-|+|+|+++|+.+ .++++......
T Consensus 179 lg~glS~a~GmA~a~~l~g~~~~v~~viGDGel~eG~~wEAl~~a~~~~~nlivIlddN~~~~~~~~q~~g~~~~v~~l~ 258 (641)
T PLN02234 179 SSTTLSAGLGMAVGRDLKGMNNSVVSVIGDGAMTAGQAYEAMNNAGYLHSNMIVILNDNKQVSLPTANLDGPTQPVGALS 258 (641)
T ss_pred hHHHHHHHHHHHHHHHhCCCCCeEEEEEccchhhhHHHHHHHHHHhhhCCCEEEEEECCCCCcccccccCCCCCCcccHH
Confidence 99999999999999999999999999999999999999999999997666999999999984 44444322111
Q ss_pred --------------cCHHHHHhhcCceEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCC
Q 016903 218 --------------DGAVVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDD 277 (380)
Q Consensus 218 --------------~~~~~~a~a~G~~~~-~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~Dd 277 (380)
.+..+++++|||.++ .|||||++++.++++++... ..++|++|.++|.+..|.+.++.
T Consensus 259 ~~l~~l~~~~~~~~~~~~~~fe~fG~~~~g~vDGHd~~~l~~al~~~k~~--~~~~P~vI~~~T~KGkGv~~~E~ 331 (641)
T PLN02234 259 CALSRLQSNCGMIRETSSTLFEELGFHYVGPVDGHNIDDLVSILETLKST--KTIGPVLIHVVTEKGRGYPYAER 331 (641)
T ss_pred HHHHHhhcccccccCCHHHHHHHcCCEEEeeECCCCHHHHHHHHHHHHhc--CCCCCEEEEEEEecCCCcchhhc
Confidence 256789999999999 99999999999999887542 23589999999999999887754
|
|
| >cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-24 Score=200.02 Aligned_cols=167 Identities=22% Similarity=0.315 Sum_probs=144.0
Q ss_pred chhhHHHHHHHhcCCC-CcEEEcccccHHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCccccCcccccch
Q 016903 71 SGEEAINIASAAAIKN-DDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQL 149 (380)
Q Consensus 71 ~G~Ea~~~~~~~~l~~-~D~v~~~yR~~~~~l~~G~~~~~~~~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~l 149 (380)
.||++.++.++..|.. .|.+++.||.+. .| ++++|.+|. . .|+ +++|+....+++...+|+||+++
T Consensus 2 ~GHg~~~l~a~l~l~G~~~~~~p~~~~~~----~g--l~~lf~qfs-~-----~gg-~psH~~~~tpGi~~~~G~LG~gL 68 (227)
T cd02011 2 PGHGGPAVLANLYLEGSYSEFYPEISQDE----EG--MRKLFKQFS-F-----PGG-IPSHAAPETPGSIHEGGELGYSL 68 (227)
T ss_pred CChHHHHHHHHHHhcCCCccccccccccH----HH--HHHHHHhcC-C-----CCC-CCCCCcccCCCeeecccchhhHH
Confidence 5899999988888876 599999999775 12 256777762 1 233 89999888899999999999999
Q ss_pred HHHHHHHHHhhhcCCCCeeEEEeCccccCcchH---HHHHHHHHHcCC-CEEEEEEcCCcccccccccc-cCCcCHHHHH
Q 016903 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDF---HAALNFSAVTEA-PVIFICRNNGWAISTPISDQ-FRSDGAVVKG 224 (380)
Q Consensus 150 p~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~---~Eal~~A~~~~L-pvi~vv~NN~~~~~~~~~~~-~~~~~~~~~a 224 (380)
++|+|+|+ ++++.+|+|++|||++++|.+ |++.+++..+++ +|+.|++||+|++++++... .+..++.+++
T Consensus 69 s~A~G~a~----d~~d~iv~~vvGDGE~eeG~lA~~W~a~~~~~~~~~~~vLpIld~Ng~~i~~pt~~~~~~~e~l~~~~ 144 (227)
T cd02011 69 SHAYGAVF----DNPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKISNPTILARISHEELEALF 144 (227)
T ss_pred HHHHHhhh----cCCCcEEEEEECcCHHHHHhHHHHHHhhhhhcccccCCeEEEEEcCCCcccCCccccccCchhHHHHH
Confidence 99999974 578899999999999999996 999999999999 79999999999999999855 5577899999
Q ss_pred hhcCceEEEEeCCCHHHHHHHHHHHHHHhh
Q 016903 225 RAYGVRSIRVDGNDALAIYSAVHAAREMAI 254 (380)
Q Consensus 225 ~a~G~~~~~VdG~D~~av~~a~~~a~~~ar 254 (380)
++|||+++.|||||+.++++++++|++++|
T Consensus 145 ~~yG~~~~~VDG~D~~av~~~~a~a~~~~~ 174 (227)
T cd02011 145 RGYGYEPYFVEGDDPETMHQAMAATLDWAI 174 (227)
T ss_pred HhCCCceEEECCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998887544
|
This enzyme requires divalent magnesium ions and TPP for activity. |
| >COG0021 TktA Transketolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.6e-23 Score=211.11 Aligned_cols=176 Identities=25% Similarity=0.293 Sum_probs=146.6
Q ss_pred CcEEEcccccHHHHH------HcCC--CHHHHHHHhhcCCCCCCCCCCCccccCC-CCCCccccCcccccchHHHHHHHH
Q 016903 87 DDFVVPQYREPGVLL------WRGF--SMQEFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAY 157 (380)
Q Consensus 87 ~D~v~~~yR~~~~~l------~~G~--~~~~~~~e~~g~~~~~~~G~~~~~H~~~-~~~~~~~~~g~lG~~lp~A~G~A~ 157 (380)
.|.++.+ -||+-+| ..|+ ++++ +.+|+. .|+..|+||.. ..+++..++|+||+|++.|+|+|+
T Consensus 59 RDRFVLS-aGHgSmllYsllhl~Gy~ls~ed-Lk~FRQ------~~SkTpGHPE~~~t~GVe~TTGPLGQGianAVGmAl 130 (663)
T COG0021 59 RDRFVLS-AGHGSMLLYSLLHLTGYDLSLED-LKNFRQ------LGSKTPGHPEYGHTPGVEATTGPLGQGLANAVGMAL 130 (663)
T ss_pred CccEEec-CCchhHHHHHHHHHccCCCCHHH-HHhhcc------CCCCCCCCCCcCCCCCeEeccCccchhHHHHHHHHH
Confidence 3665554 3554333 2465 5554 444654 37778999884 467888899999999999999999
Q ss_pred HhhhcC-----C-----CCeeEEEeCccccCcchHHHHHHHHHHcCC-CEEEEEEcCCcccccccccccCCcCHHHHHhh
Q 016903 158 ALKMDR-----K-----DACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 158 A~k~~~-----~-----~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a 226 (380)
|.|+.. + |..|+|++|||+++||+.+|+..+|+.++| ++|++.++|.++|++.+...+ ..|+.+|+++
T Consensus 131 Ae~~La~~fn~~g~~ivdh~tYvl~GDGclmEGvs~EA~slAG~l~L~kLIvlyD~N~IsiDG~~~~~f-~ed~~~RfeA 209 (663)
T COG0021 131 AEKHLAALFNRPGFDIVDHYTYVLVGDGCLMEGVSHEAASLAGHLKLGKLIVLYDSNDISIDGDTSLSF-TEDVAKRFEA 209 (663)
T ss_pred HHHHHHhhhCCCCCccccceEEEEecCchHhcccHHHHHHHHhhcCCCcEEEEEeCCCceeccCccccc-chhHHHHHHh
Confidence 998642 2 468999999999999999999999999999 799999999999999988776 6789999999
Q ss_pred cCceEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCC
Q 016903 227 YGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT 274 (380)
Q Consensus 227 ~G~~~~-~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~ 274 (380)
|||+++ .+||||++++..|+++|... .++|++|+|+|.-.+|-..
T Consensus 210 yGW~vi~~~DG~D~e~I~~Ai~~Ak~~---~dkPtlI~~kTiIG~Gsp~ 255 (663)
T COG0021 210 YGWNVIRVIDGHDLEAIDKAIEEAKAS---TDKPTLIIVKTIIGKGSPN 255 (663)
T ss_pred cCCeEEEecCCCCHHHHHHHHHHHHhc---CCCCeEEEEEeeeecCCCC
Confidence 999999 68999999999999999863 6799999999999888665
|
|
| >PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-22 Score=218.00 Aligned_cols=230 Identities=19% Similarity=0.210 Sum_probs=169.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc----CCcccccccchhhHHHHHHHhcCC------CCcEEEcc-cccHH---HH
Q 016903 35 EGVAIKMYNDMVTLQTMDTIFYEAQRQ----GRISFYLTTSGEEAINIASAAAIK------NDDFVVPQ-YREPG---VL 100 (380)
Q Consensus 35 ~e~l~~~y~~M~~~R~~e~~~~~~~~~----g~i~~~~~~~G~Ea~~~~~~~~l~------~~D~v~~~-yR~~~---~~ 100 (380)
+.++.+-.+..+|-..++......... |.++.+.++. +...++....|+ ..|.|++. |-..+ .+
T Consensus 85 d~~~e~~i~~~iR~~a~~mv~~A~~~~~~~GGH~~s~~S~a--~i~~vl~~~~~r~~~~~~~~D~V~skGHasp~lYA~~ 162 (896)
T PRK13012 85 DLALEERLAAIIRWNALAMVVRANRAYGELGGHIASYASAA--DLFEVGFNHFFRGRDDAGGGDLVYFQPHSAPGIYARA 162 (896)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcccHHHH--HHHHHHHHhhcCCCCCCCCCCEEEECcchHHHHHHHH
Confidence 344555455555555554433222112 3333332222 334444445566 46876662 33322 34
Q ss_pred HHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCC-CC-ccccCcccccchHHHHHHHHHhhh-------cCCCCeeEEE
Q 016903 101 LWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HN-YFTVSSTIATQLPHAVGAAYALKM-------DRKDACAVTY 171 (380)
Q Consensus 101 l~~G~~~~~~~~e~~g~~~~~~~G~~~~~H~~~~~-~~-~~~~~g~lG~~lp~A~G~A~A~k~-------~~~~~~vv~~ 171 (380)
...|+..++-+..|+... .|.+++.||.... ++ +..++||||.|+++|+|.|++.|+ ...+++|+|+
T Consensus 163 ~l~G~l~~e~L~~fR~~~----~~~gl~~~P~p~~~p~~~e~~TGSlG~G~~~ai~~A~~~ryl~~~g~~~~~~~~v~~~ 238 (896)
T PRK13012 163 FLEGRLSEEQLDHFRQEI----GGPGLSSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQHRGLKDTSGRKVWGF 238 (896)
T ss_pred HHcCCCCHHHHHHhcCCC----CCCCCCCCCCcCCCCCCEecCCCCchHHHHHHHHHHHhcccccccccccCCCCeEEEE
Confidence 457876666677776431 1567888877543 33 667899999999999999999983 4567899999
Q ss_pred eCccccCcchHHHHHHHHHHcCC-CEEEEEEcCCcccccccccccC-CcCHHHHHhhcCceEEEE---------------
Q 016903 172 FGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFR-SDGAVVKGRAYGVRSIRV--------------- 234 (380)
Q Consensus 172 ~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~~~~~~~~~~~~~-~~~~~~~a~a~G~~~~~V--------------- 234 (380)
+|||+++||.+|||+.+|++++| |+||||++|..++++++..... ..++.++++++||++++|
T Consensus 239 lGDGEl~Eg~~~eA~~~A~~~~LdNLi~ivD~N~~~lDG~v~~~~~~~~~l~~~f~a~GW~Vi~v~wg~~wd~l~~~d~~ 318 (896)
T PRK13012 239 FGDGEMDEPESIAALSLAAREGLDNLVFVINCNLQRLDGPVRGNGRIIQELEALFRGAGWNVIKVLWGSDWDALFARDTT 318 (896)
T ss_pred EchhhhccHHHHHHHHHHHHhCCCcEEEEEECCCccccCccccccccchHHHHHHHhCCCEEEEEecccchHHHhcCCCc
Confidence 99999999999999999999999 8999999999999999887544 468999999999999999
Q ss_pred -----------e-------------------------------------------CCCHHHHHHHHHHHHHHhhccCCcE
Q 016903 235 -----------D-------------------------------------------GNDALAIYSAVHAAREMAIGEGRPI 260 (380)
Q Consensus 235 -----------d-------------------------------------------G~D~~av~~a~~~a~~~ar~~~gP~ 260 (380)
| |||+.+|++|++.|.+. .++|+
T Consensus 319 ~~l~~~~~~~~Dg~yq~~~~~~g~~~r~~ff~~~~~~~~lv~~~~d~~i~~l~rgGHD~~~i~~A~~~a~~~---~~~Pt 395 (896)
T PRK13012 319 GALVRRFAETVDGQFQTFKANDGAYNREHFFGQDPELAALVAHLSDEDIDRLKRGGHDPRKVYAAYAAAVRH---KGQPT 395 (896)
T ss_pred cHHHHHHHhCCcHHHHHHhhcchHHHHHHhccccHHHHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhC---CCCCE
Confidence 8 99999999999988764 46899
Q ss_pred EEEEEeecCCCCC
Q 016903 261 LIEALTYRVGHHT 273 (380)
Q Consensus 261 lIe~~t~R~~gHs 273 (380)
+|.++|.+.+|-+
T Consensus 396 vIla~TvkG~G~~ 408 (896)
T PRK13012 396 VILAKTKKGYGMG 408 (896)
T ss_pred EEEEEeeecCCCC
Confidence 9999999999965
|
|
| >PLN02582 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.2e-23 Score=216.12 Aligned_cols=232 Identities=13% Similarity=0.162 Sum_probs=165.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhhHHHHHHHhcCC-CCcEEEc--ccccHHHHHHc
Q 016903 27 DSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-NDDFVVP--QYREPGVLLWR 103 (380)
Q Consensus 27 ~~~~~~~~~e~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~G~Ea~~~~~~~~l~-~~D~v~~--~yR~~~~~l~~ 103 (380)
|.+.+.++.++|.++-..+ |-+.++.. .. ..|.++ +++|---+.+++-..|+ +.|.++. .|-..++.+..
T Consensus 40 p~dlk~l~~~~l~~la~~i-R~~ii~~~--~~-~~GH~g---~~Ls~vel~~aL~~~~~~p~Dr~i~s~GH~ay~~~~l~ 112 (677)
T PLN02582 40 PIHMKNLSVKELKQLADEL-RSDVIFNV--SK-TGGHLG---SSLGVVELTVALHYVFNAPQDKILWDVGHQSYPHKILT 112 (677)
T ss_pred HHHHhhCCHHHHHHHHHHH-HHHHHHHH--Hh-cCCCcC---ccccHHHHHHHHHHhhCCCCCeEEEECcchHHHHHHHH
Confidence 4456778888877654442 33333332 21 134443 34443333444445554 7798887 47777888888
Q ss_pred CCCHHHHHHHhhcCCCCCCCCCCCccccCCCC-CCccccCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchH
Q 016903 104 GFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDF 182 (380)
Q Consensus 104 G~~~~~~~~e~~g~~~~~~~G~~~~~H~~~~~-~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~ 182 (380)
|. .+-|..++. .|+ +++|+...+ ++....+|++|+++++|+|+|+|.++++.+.+|+|++|||++++|.+
T Consensus 113 gr--~~~l~~~r~------~g~-l~g~p~~~e~~~~~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~viGDG~~~~G~~ 183 (677)
T PLN02582 113 GR--RDKMHTMRQ------TNG-LSGFTKRAESEYDCFGTGHSSTTISAGLGMAVGRDLKGKKNNVVAVIGDGAMTAGQA 183 (677)
T ss_pred cc--HHHhccccc------CCC-cCCCCCCCCCCCceeccchhhhhHHHHHHHHHHHHhcCCCCEEEEEecccccchhhH
Confidence 87 233555543 244 888887543 67778899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCEEEEEEcCCc-cc--------ccccccc-------cCC---------------------cCHH----
Q 016903 183 HAALNFSAVTEAPVIFICRNNGW-AI--------STPISDQ-------FRS---------------------DGAV---- 221 (380)
Q Consensus 183 ~Eal~~A~~~~Lpvi~vv~NN~~-~~--------~~~~~~~-------~~~---------------------~~~~---- 221 (380)
|||||.|+.+++|+|+||+||+. ++ +...... ... ..+.
T Consensus 184 ~Ealn~a~~~~~~li~iv~~N~~~s~~~~~~~s~~~~vg~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (677)
T PLN02582 184 YEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPAPPVGALSSALSRLQSSRPLRELREVAKGVTKQIGGPMHELAAKVD 263 (677)
T ss_pred HHHHHHHHhhCcCEEEEEECCCCccccccccCCCCCCccHHHHHHHHHhcchhHHHHHHHHHHHHHhCcHhHHHHHHHHH
Confidence 99999999999999999999996 23 1111000 000 0111
Q ss_pred ------------HHHhhcCceEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCC
Q 016903 222 ------------VKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSD 276 (380)
Q Consensus 222 ------------~~a~a~G~~~~-~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~D 276 (380)
.++++|||.++ .|||||++++.++++.+.+. ..++|++|.++|-+..|...+.
T Consensus 264 ~~~k~~~~~~~~~~fe~~G~~y~g~iDGHd~~~L~~al~~~k~~--~~~~P~vihv~T~KGkG~~~ae 329 (677)
T PLN02582 264 EYARGMISGSGSTLFEELGLYYIGPVDGHNIDDLVTILREVKST--KTTGPVLIHVVTEKGRGYPYAE 329 (677)
T ss_pred HHhhhccCccccchHHHcCCeEEeeeCCCCHHHHHHHHHHHHhc--CCCCCEEEEEEecCCCCCChhh
Confidence 24899999977 79999999999999988753 1169999999999999877653
|
|
| >PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.6e-22 Score=213.90 Aligned_cols=230 Identities=19% Similarity=0.203 Sum_probs=172.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCcccccccchhhHHHHHHHhcCCC------CcEEEcc-cccH---HH
Q 016903 34 SEGVAIKMYNDMVTLQTMDTIFYEAQRQ----GRISFYLTTSGEEAINIASAAAIKN------DDFVVPQ-YREP---GV 99 (380)
Q Consensus 34 ~~e~l~~~y~~M~~~R~~e~~~~~~~~~----g~i~~~~~~~G~Ea~~~~~~~~l~~------~D~v~~~-yR~~---~~ 99 (380)
.+.++.+.....+|...++......... |.++.+.++ -+...++....|+. +|+|++. |-.. +.
T Consensus 76 g~~~~e~~i~~~iR~~a~~mv~~An~~~~~~GGH~~s~~S~--a~i~~vl~~~~~r~~~~~~~~D~V~skGHasp~lYA~ 153 (891)
T PRK09405 76 GDLELERRIRSYIRWNAAAMVLRANKKDLGLGGHISSFASS--ATLYEVGFNHFFRAPNEPHGGDLVFFQGHASPGIYAR 153 (891)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcccChHHH--HHHHHHHHHhhCCCCCCCCCCCEEEECchHHHHHHHH
Confidence 3455666666776666665544332211 333222222 13334445556664 6877752 3322 23
Q ss_pred HHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCC-CC-ccccCcccccchHHHHHHHHHhhh-------cCCCCeeEE
Q 016903 100 LLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HN-YFTVSSTIATQLPHAVGAAYALKM-------DRKDACAVT 170 (380)
Q Consensus 100 ~l~~G~~~~~~~~e~~g~~~~~~~G~~~~~H~~~~~-~~-~~~~~g~lG~~lp~A~G~A~A~k~-------~~~~~~vv~ 170 (380)
+...|+..++-|..|+.. +.|+++++||.... ++ ....+++||.|++.|+|.|++.|+ .+.+++|+|
T Consensus 154 ~~l~G~l~~e~L~~fR~~----~~g~gl~syPhp~~~p~~~~~~tgS~G~G~~~a~~~A~~~kyl~~~~~~~~~~~rv~~ 229 (891)
T PRK09405 154 AFLEGRLTEEQLDNFRQE----VDGKGLSSYPHPWLMPDFWQFPTVSMGLGPIMAIYQARFLKYLENRGLKDTSDQKVWA 229 (891)
T ss_pred HHHcCCCCHHHHHHhcCC----CCCCCCCCCCCcCCCCCCeecCccccchhHHHHHHHHHhCccccccccccCCCceEEE
Confidence 445787667777777643 24678888877543 33 456789999999999999999993 456789999
Q ss_pred EeCccccCcchHHHHHHHHHHcCC-CEEEEEEcCCcccccccccccC-CcCHHHHHhhcCceEEEE--------------
Q 016903 171 YFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFR-SDGAVVKGRAYGVRSIRV-------------- 234 (380)
Q Consensus 171 ~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~~~~~~~~~~~~~-~~~~~~~a~a~G~~~~~V-------------- 234 (380)
++|||+++||.+|||+.+|++++| |+||||++|..++++++..... ..++.+++++|||+++.|
T Consensus 230 ~~GDGEldEg~~~EA~~~A~~~~LdNLi~ivD~N~q~lDG~v~~~~~~~~~l~~~f~a~GW~Vi~v~wG~~wd~l~~~d~ 309 (891)
T PRK09405 230 FLGDGEMDEPESLGAISLAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGSRWDPLLAKDT 309 (891)
T ss_pred EEcchhhccHHHHHHHHHHHHhCCCCEEEEEECCCcccCCccccccccchhHHHHHhhCCCEEEEEeccccchhhhccCC
Confidence 999999999999999999999999 8999999999999999886433 568999999999999999
Q ss_pred ------------e-------------------------------------------CCCHHHHHHHHHHHHHHhhccCCc
Q 016903 235 ------------D-------------------------------------------GNDALAIYSAVHAAREMAIGEGRP 259 (380)
Q Consensus 235 ------------d-------------------------------------------G~D~~av~~a~~~a~~~ar~~~gP 259 (380)
| |||+.+|++|++.|.+. .++|
T Consensus 310 ~g~L~~~~~~~~Dg~yq~~~~~~ga~~R~~ffg~~~~~~~lv~~~sD~~i~~l~~gGHD~~~i~~A~~~A~~~---~~~P 386 (891)
T PRK09405 310 SGKLVQLMNETVDGDYQTYKAKDGAYVREHFFGKYPETKALVADMSDDDIWALNRGGHDPRKVYAAYKAAVEH---KGQP 386 (891)
T ss_pred ccHHHHHHHhCCcHHHHHHHhcccHHHHHHhcCCCHHHHHHHhhCCHHHHHHhccCCCCHHHHHHHHHHHHhC---CCCC
Confidence 4 99999999999988863 4789
Q ss_pred EEEEEEeecCCCC
Q 016903 260 ILIEALTYRVGHH 272 (380)
Q Consensus 260 ~lIe~~t~R~~gH 272 (380)
++|.++|.+.+|.
T Consensus 387 tvIia~TvkG~G~ 399 (891)
T PRK09405 387 TVILAKTIKGYGM 399 (891)
T ss_pred EEEEEeceecCCC
Confidence 9999999999997
|
|
| >KOG0523 consensus Transketolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.8e-22 Score=200.81 Aligned_cols=217 Identities=22% Similarity=0.228 Sum_probs=171.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccccccchhhHHHHHHHhcCC---------CCcEEEcc--ccc---HHHHHHcCCCHHH
Q 016903 44 DMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK---------NDDFVVPQ--YRE---PGVLLWRGFSMQE 109 (380)
Q Consensus 44 ~M~~~R~~e~~~~~~~~~g~i~~~~~~~G~Ea~~~~~~~~l~---------~~D~v~~~--yR~---~~~~l~~G~~~~~ 109 (380)
.|-.+|..+-.+......|..++..+.. +...+-.-..++ ..|.++.+ |-+ .++....|....+
T Consensus 13 ~~n~lri~si~~~~~a~sghp~s~~s~A--~~~~vlf~~~mr~~~~~p~~~n~Drfvls~GHa~~llYa~~~l~G~~~~e 90 (632)
T KOG0523|consen 13 AVNNLRILSIDATSAAKSGHPGSPLSLA--PIMHVLFFEVMRYNPADPYWFNRDRFVLSNGHACPLLYAHWHLAGYDREE 90 (632)
T ss_pred HhhhhhhhhHHHHHhhhcCCCCCccccc--hhhhhhhhhheecccCCcCCCCCceEEEeccccchHHHHHHHHhccCcHH
Confidence 4666677776666665666654433221 333333222232 13766665 444 3455567887777
Q ss_pred HHHHhhcCCCCCCCCCCCccccCCCCCCccccCcccccchHHHHHHHHHhhhcCC-CCeeEEEeCccccCcchHHHHHHH
Q 016903 110 FANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRK-DACAVTYFGDGGTSEGDFHAALNF 188 (380)
Q Consensus 110 ~~~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~-~~~vv~~~GDG~~~eG~~~Eal~~ 188 (380)
-|.+|+.. |+..+.|+....++....+|++|++++.|+|+|++.|+.+. +..|+|++|||+++||..|||+++
T Consensus 91 dl~~~Rq~------~s~t~ghp~~~~~~v~v~TG~lgQgis~a~GmA~~~k~~~k~~~rv~~vlGDG~~~eG~~~EA~s~ 164 (632)
T KOG0523|consen 91 DLKNFRQI------GSDTPGHPEPELPGVEVATGPLGQGISNAVGMAYAGKHLGKASNRVYCVLGDGCLTEGSVWEAMSL 164 (632)
T ss_pred HHHHHHhh------CCCCCCCCcccCCCceeccCCccchHHHHHHHHHHHHhhccccceEEEEEcCchhccchHHHHHhh
Confidence 78888764 77788999877777788899999999999999999999887 889999999999999999999999
Q ss_pred HHHcCC-CEEEEEEcCCcccccccccccCCcCHHH-HHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 189 SAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVV-KGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 189 A~~~~L-pvi~vv~NN~~~~~~~~~~~~~~~~~~~-~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
|+.|+| ++|+|.+||+.+++++++..+. .++.+ ++++|||++..|||+|++++.+++.+|.. ..++|++|-+.|
T Consensus 165 Ag~l~ldnLVai~D~n~is~~g~t~~~~~-~dV~~~r~ea~g~~~~~V~~~d~d~i~ka~~~a~~---~k~kpt~i~~~t 240 (632)
T KOG0523|consen 165 AGHLKLDNLVAIYDNNKISIDGATSLGFD-EDVYQLRFEAFGWNVIIVDGGDVDEIRKAIGKAKS---VKGKPTAIKATT 240 (632)
T ss_pred hhhcccCCEEEEEccccccCCCCCccccc-ccHHHHHHHHhCceEEEEcCcCHHHHHHHHhhhhh---ccCCceeeeeee
Confidence 999999 7999999999999999887765 45666 99999999999999999999999999874 357999999999
Q ss_pred ecCCCC
Q 016903 267 YRVGHH 272 (380)
Q Consensus 267 ~R~~gH 272 (380)
+..+|-
T Consensus 241 ~~g~G~ 246 (632)
T KOG0523|consen 241 FIGRGS 246 (632)
T ss_pred eeecCc
Confidence 998874
|
|
| >PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.2e-20 Score=171.74 Aligned_cols=220 Identities=17% Similarity=0.175 Sum_probs=150.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhhHHHHHHHhcCC-CCcEEEc--ccccHHHHHHc
Q 016903 27 DSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-NDDFVVP--QYREPGVLLWR 103 (380)
Q Consensus 27 ~~~~~~~~~e~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~G~Ea~~~~~~~~l~-~~D~v~~--~yR~~~~~l~~ 103 (380)
|.+...+|.++|..+-..+ |.+ .+....+.| +.+.++.|---..+|+...++ |.|.++. .|....|-+..
T Consensus 7 p~dlk~ls~~eL~~La~ei---R~~--ii~~vs~~G--GHl~snLGvVELTiALH~vFd~p~DkivwDvGHQ~Y~HKiLT 79 (270)
T PF13292_consen 7 PEDLKKLSIEELEQLAQEI---REF--IIETVSKTG--GHLASNLGVVELTIALHYVFDSPKDKIVWDVGHQAYVHKILT 79 (270)
T ss_dssp HHHHTTS-GGGHHHHHHHH---HHH--HHHHCTCCC--STHHHHHCCHHHHHHHHHHS-TTTSEEEESSSTT-HHHHHCT
T ss_pred HHHHHcCCHHHHHHHHHHH---HHH--HHHHHhhcC--CCCCCCccHHHHHHHHHHHhCCCCCeEEEecccccchhhhcc
Confidence 4456788888888777665 543 222222233 567788888888899999997 7899887 69999999998
Q ss_pred CCCHHHHHHHhhcCCCCCCCCCCCccccCCCC-CCccccCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchH
Q 016903 104 GFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDF 182 (380)
Q Consensus 104 G~~~~~~~~e~~g~~~~~~~G~~~~~H~~~~~-~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~ 182 (380)
|.. +.|..++.. .|+++.+...+ ..-....|+-+.+++.|+|+|.|..+.+.+..||+++|||++.-|+.
T Consensus 80 GR~--~~f~TlRq~-------gGlSGF~~r~ES~~D~f~~GHsstsiSaa~Gma~ar~l~~~~~~vVaVIGDGalt~Gma 150 (270)
T PF13292_consen 80 GRR--DRFHTLRQY-------GGLSGFPKRSESEYDAFGAGHSSTSISAALGMAVARDLKGEDRKVVAVIGDGALTGGMA 150 (270)
T ss_dssp TTC--CCGGGTTST-------TS--SS--TTT-TT--S--SSSS-HHHHHHHHHHHHHHHTS---EEEEEETTGGGSHHH
T ss_pred CcH--HHhchhhhc-------CCcCCCCCcccCCCCcccCCccHhHHHHHHHHHHHHHhcCCCCcEEEEECCcchhHHHH
Confidence 863 345555532 34555554333 33455689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCEEEEEEcCCcccccccccc-------cC--------------------CcC------------HHHH
Q 016903 183 HAALNFSAVTEAPVIFICRNNGWAISTPISDQ-------FR--------------------SDG------------AVVK 223 (380)
Q Consensus 183 ~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~-------~~--------------------~~~------------~~~~ 223 (380)
+||||-|+..+-++|+|+++|+.+|+...... .. ... ....
T Consensus 151 ~EALN~~g~~~~~liVILNDN~mSIs~nvGals~~L~~l~~~~~y~~~k~~~~~~l~~~~~~~~~~~r~~~s~K~~~~~l 230 (270)
T PF13292_consen 151 FEALNNAGHLKSNLIVILNDNEMSISPNVGALSKYLSKLRSSPTYNKLKEDVKSLLKKIPPIEEFAKRIKESLKGFSPNL 230 (270)
T ss_dssp HHHHHHHHHHT-SEEEEEEE-SBSSSB--SSHCCC-------------------------------------------CC
T ss_pred HHHHHHHHhcCCCEEEEEeCCCcccCCCcchHHHHHHhccchhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhhhHHH
Confidence 99999999999999999999999887543210 00 000 0124
Q ss_pred HhhcCceEEE-EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 224 GRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 224 a~a~G~~~~~-VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
++.+|+.++- |||||+.++.++++.+.+ -+||+||.+.|
T Consensus 231 Fe~LG~~Y~GPiDGHdl~~Li~~l~~~K~----~~gPvllHV~T 270 (270)
T PF13292_consen 231 FEELGFDYIGPIDGHDLEELIEVLENAKD----IDGPVLLHVIT 270 (270)
T ss_dssp CHHCT-EEEEEEETT-HHHHHHHHHHHCC----SSSEEEEEEE-
T ss_pred HHHcCCeEEeccCCCCHHHHHHHHHHHhc----CCCCEEEEEeC
Confidence 6777999886 999999999999888765 58999999987
|
|
| >COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.3e-19 Score=178.45 Aligned_cols=229 Identities=16% Similarity=0.164 Sum_probs=174.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhhHHHHHHHhcCC-CCcEEEc--ccccHHHHHH
Q 016903 26 PDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-NDDFVVP--QYREPGVLLW 102 (380)
Q Consensus 26 ~~~~~~~~~~e~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~G~Ea~~~~~~~~l~-~~D~v~~--~yR~~~~~l~ 102 (380)
.|.+.+.+|.++|..+-..+ |.+ .+......| +...++.|---..+++...++ |.|.++. .|....|-+.
T Consensus 10 ~P~dLk~ls~~eL~~La~Ei---R~~--li~~vS~~G--GHlgsnLGvVELTiALH~VF~sP~D~~IwDVgHQaYpHKiL 82 (627)
T COG1154 10 SPADLKKLSIEELPQLADEI---REF--LLEVVSATG--GHLGSNLGVVELTIALHYVFDSPKDKLIWDVGHQAYPHKIL 82 (627)
T ss_pred CHHHHhhCCHHHHHHHHHHH---HHH--HHHHhccCC--CccCCCcChhhhhHHHHHHhCCCCCCeEEecCcccchhHHh
Confidence 45567889999998876665 433 222222333 466678888888889988887 7898887 7999999999
Q ss_pred cCCCHHHHHHHhhcCCCCCCCCCCCccccCCCC-CCccccCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcch
Q 016903 103 RGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGD 181 (380)
Q Consensus 103 ~G~~~~~~~~e~~g~~~~~~~G~~~~~H~~~~~-~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~ 181 (380)
.|.. +-|..++.+ .+++..+...+ ..-+..+|+-+++++.|+|+|.|..+++.++.||+++|||++.-|+
T Consensus 83 TGR~--e~f~tlRq~-------~GlsGf~~r~ESe~D~f~~GHsSTSiSaalG~A~A~~~~g~~~~vvaVIGDGAlt~Gm 153 (627)
T COG1154 83 TGRR--EQFDTLRQK-------DGLSGFPKREESEHDWFGVGHSSTSISAALGMAKARDLKGEDRNVVAVIGDGALTGGM 153 (627)
T ss_pred cCch--hhcchhhhc-------CCCCCCCCcccCCCcccccCchHHHHHHHhhHHHHHHhcCCCCcEEEEECCccccchH
Confidence 9974 566666543 34444444333 3445678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HcCCCEEEEEEcCCcccccccccc-------cC----------C------------------cC------
Q 016903 182 FHAALNFSA-VTEAPVIFICRNNGWAISTPISDQ-------FR----------S------------------DG------ 219 (380)
Q Consensus 182 ~~Eal~~A~-~~~Lpvi~vv~NN~~~~~~~~~~~-------~~----------~------------------~~------ 219 (380)
.+||||.|+ ..+-|+|+|+++|..+|+.+.... .. . .+
T Consensus 154 A~EALN~ag~~~~~~~iVILNDNeMSIs~nvGal~~~L~~l~~~~~y~~~~~~~kk~l~~~~~~~~~~~~r~e~~~K~l~ 233 (627)
T COG1154 154 AFEALNNAGADLKSNLIVILNDNEMSISPNVGALSKHLARLRSGPFYQSLREGGKKVLSKVGPPLKRFAKRAEESIKGLL 233 (627)
T ss_pred HHHHHhhhhhccCCCEEEEEeCCCcccCCCccHHHHHHHHHhccchHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhccc
Confidence 999999998 445689999999999998654210 00 0 00
Q ss_pred -HHHHHhhcCceEEE-EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCC
Q 016903 220 -AVVKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT 274 (380)
Q Consensus 220 -~~~~a~a~G~~~~~-VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~ 274 (380)
..-.++.+|+.++- |||||++++..+++.+.+ .++|+||.+.|-+..|=..
T Consensus 234 ~~~~lFeelGf~YiGPiDGHni~~Li~~Lk~~kd----~~gPvllHv~T~KGKGY~p 286 (627)
T COG1154 234 VPGTLFEELGFNYIGPIDGHNLEELIPTLKNAKD----LKGPVLLHVVTKKGKGYKP 286 (627)
T ss_pred CchhhHHHhCCeeECCcCCCCHHHHHHHHHHHhc----CCCCEEEEEEecCCCCCCh
Confidence 00267889999886 999999999999988775 5899999999988877443
|
|
| >PRK05261 putative phosphoketolase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-18 Score=185.44 Aligned_cols=201 Identities=21% Similarity=0.237 Sum_probs=155.7
Q ss_pred cccccccchhhHHHHHHHhcCCCC--cEEEcccccHH------HHHHcC--------CCHHHH-HHHhhcCCCCCCCCCC
Q 016903 64 ISFYLTTSGEEAINIASAAAIKND--DFVVPQYREPG------VLLWRG--------FSMQEF-ANQCFGNKADYGKGRQ 126 (380)
Q Consensus 64 i~~~~~~~G~Ea~~~~~~~~l~~~--D~v~~~yR~~~------~~l~~G--------~~~~~~-~~e~~g~~~~~~~G~~ 126 (380)
+|.+-++.|+-.+.+++...++.. |+++..--||+ .+..-| ++..+. |..++-+-. .-.+
T Consensus 49 ~GHwGt~pgln~vyahln~li~~~~~~~~~V~g~GHg~p~~~a~~~L~Gs~~~~yp~is~d~~gl~~lfrqfs---~pgg 125 (785)
T PRK05261 49 LGHWGTTPGLNFIYAHLNRLIRKYDLNMIYITGPGHGGPAMVANAYLEGTYSEIYPEITQDEEGMARLFKQFS---FPGG 125 (785)
T ss_pred CCCCCCcHHHHHHHHHHHHHHhhcCCceEEEeCCCccHHHHHHHHHHcCCCcccCCCCCccHHHHHHHHHhcc---CCCC
Confidence 366777889999888888888764 65554444553 223356 232231 332332211 1236
Q ss_pred CccccCCCCCCccccCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchH---HHHHHHHHHcCC-CEEEEEEc
Q 016903 127 MPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDF---HAALNFSAVTEA-PVIFICRN 202 (380)
Q Consensus 127 ~~~H~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~---~Eal~~A~~~~L-pvi~vv~N 202 (380)
+++|+....+|+...+|+||+++++|+|+|+. +++.+|+|++|||++++|.+ |++.+++...++ +|+.|+++
T Consensus 126 ~~sH~~~~tPGi~~~~G~LG~gls~A~G~Al~----~~d~iv~~~vGDGE~EeG~lAa~W~~~~~~~~~~~g~vLPIld~ 201 (785)
T PRK05261 126 IPSHAAPETPGSIHEGGELGYSLSHAYGAAFD----NPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHL 201 (785)
T ss_pred cCCCCCCCCCCeeeCCCchhhHHHHHHHHHHc----CCCCEEEEEECcCchhhhhhHHHhhhhhhcccccCCCEEEEEEe
Confidence 88999877789999999999999999999965 57889999999999999984 888888888889 79999999
Q ss_pred CCcccccccccc-cCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHH-----------Hhhcc---CCcE--EEEEE
Q 016903 203 NGWAISTPISDQ-FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAARE-----------MAIGE---GRPI--LIEAL 265 (380)
Q Consensus 203 N~~~~~~~~~~~-~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~-----------~ar~~---~gP~--lIe~~ 265 (380)
|+|+|++++... .+..++.+++++|||+++.|||+|+.+++.+++++++ .||.+ .+|+ +|.++
T Consensus 202 Ng~~Is~pt~~~~~~~e~l~~rf~g~Gw~~i~VDG~D~~av~~a~a~al~~~i~~i~~iq~~Ar~~~~~~~P~wp~Ii~r 281 (785)
T PRK05261 202 NGYKIANPTILARISDEELEALFRGYGYEPYFVEGDDPADMHQEMAAALDTAIEEIRAIQKEAREGGDTTRPRWPMIVLR 281 (785)
T ss_pred cCCcCCCCccccccCcHhHHHHHHHCCCeeEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEE
Confidence 999999999865 4457899999999999999999999999988766654 44445 5899 99999
Q ss_pred eecCCC
Q 016903 266 TYRVGH 271 (380)
Q Consensus 266 t~R~~g 271 (380)
|...+|
T Consensus 282 T~kG~g 287 (785)
T PRK05261 282 TPKGWT 287 (785)
T ss_pred CCccCC
Confidence 998776
|
|
| >PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.9e-18 Score=166.06 Aligned_cols=167 Identities=19% Similarity=0.134 Sum_probs=136.3
Q ss_pred ccccHHHHHHcCCCHH-HHHHHhhcCCC------CCCCCCCCccccCCCCCCccccCcccccchHHHHHHHHHhhhcCCC
Q 016903 93 QYREPGVLLWRGFSMQ-EFANQCFGNKA------DYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKD 165 (380)
Q Consensus 93 ~yR~~~~~l~~G~~~~-~~~~e~~g~~~------~~~~G~~~~~H~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~ 165 (380)
.||||+.+..+|.++. .++.+.+|+.+ ||+.+.++.+|+.. .++.+..+++|.++++|.|+++|.+.++++
T Consensus 14 ~~~gh~~C~GCG~~~~~~~l~~~lg~~~v~~~~iGC~~~~~g~~p~~~--~~~~~i~~~~G~~~~~A~G~a~A~~~~~~~ 91 (300)
T PRK11864 14 FYPGNAACPGCGAPLGLRYLLKALGEKTVLVIPASCSTVIQGDTPKSP--LTVPVLHTAFAATAAVASGIEEALKARGEK 91 (300)
T ss_pred ecCCCccCCCCCCHHHHHHHHHHhCCCeEEEeCCCccceecCCCCccc--ccccceeehhhChHHHHHHHHHHHHhhCCC
Confidence 5799999999998887 88888888776 77777766666554 356667899999999999999999887665
Q ss_pred C-eeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccc-----------------cCCcCHHHHHhhc
Q 016903 166 A-CAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQ-----------------FRSDGAVVKGRAY 227 (380)
Q Consensus 166 ~-~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~-----------------~~~~~~~~~a~a~ 227 (380)
. .|++++|||++.++.+ |+|+.|+.+++|++|||.||.+.+.|-.+.. ....|+..++.++
T Consensus 92 ~~~Vva~~GDG~~~~~g~-~~l~~A~~~~~~v~~vv~dN~~~~~TGgQ~S~~Tp~ga~t~tsp~G~~~~kkdi~~i~~a~ 170 (300)
T PRK11864 92 GVIVVGWAGDGGTADIGF-QALSGAAERNHDILYIMYDNEAYMNTGIQRSSSTPYGAWTTTTPGGKREHKKPVPDIMAAH 170 (300)
T ss_pred CcEEEEEEccCccccccH-HHHHHHHHhCcCEEEEEECCeeeecCCCCCCCCCcCCCccccCCCCCcCCCCCHHHHHHHc
Confidence 4 4555999999988876 9999999999999999999998665432211 1234788999999
Q ss_pred CceEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 228 GVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 228 G~~~~-~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
|++.+ +++-.|+.++.+++++|++ .+||.+|++.+
T Consensus 171 g~~yVA~~~~~~~~~~~~~i~~A~~----~~Gps~I~~~s 206 (300)
T PRK11864 171 KVPYVATASIAYPEDFIRKLKKAKE----IRGFKFIHLLA 206 (300)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 99765 6888999999999999997 48999999875
|
|
| >cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL) | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.8e-18 Score=153.29 Aligned_cols=114 Identities=22% Similarity=0.273 Sum_probs=93.4
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEc-CCcccccccccc-----
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRN-NGWAISTPISDQ----- 214 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~N-N~~~~~~~~~~~----- 214 (380)
..|+||.++|.|+|+++|. ++++|+|++|||++++. .++|++|++++||+++||.| |+|++.......
T Consensus 46 ~~g~mG~~lp~AiGa~la~----~~~~vv~i~GDG~f~~~--~~el~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~~~ 119 (172)
T cd02004 46 TFGTLGVGLGYAIAAALAR----PDKRVVLVEGDGAFGFS--GMELETAVRYNLPIVVVVGNNGGWYQGLDGQQLSYGLG 119 (172)
T ss_pred CCCcccchHHHHHHHHHhC----CCCeEEEEEcchhhcCC--HHHHHHHHHcCCCEEEEEEECcccccchhhhhhhccCC
Confidence 3588999999999998874 67899999999999864 47799999999997776655 568776533221
Q ss_pred ------cCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 215 ------FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 215 ------~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
....++.+++++||+++.+|+ +++++.++++++.+ .++|+|||+.+
T Consensus 120 ~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~i 171 (172)
T cd02004 120 LPVTTLLPDTRYDLVAEAFGGKGELVT--TPEELKPALKRALA----SGKPALINVII 171 (172)
T ss_pred CceeccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHH----cCCCEEEEEEc
Confidence 235689999999999999999 78898888888765 47999999976
|
Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity. |
| >cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc) | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.5e-18 Score=157.01 Aligned_cols=120 Identities=23% Similarity=0.280 Sum_probs=97.1
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEE-EcCCccccccccc------
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPISD------ 213 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv-~NN~~~~~~~~~~------ 213 (380)
..|+||+++|.|+|+++|. ++++|||++|||+|++. ..+|.+|+++++|+++|| +|++|++......
T Consensus 51 ~~g~mG~~lpaaiGa~la~----p~r~vv~i~GDG~f~m~--~~eL~Ta~~~~lpvi~vV~NN~~yg~~~~~q~~~~~~~ 124 (196)
T cd02013 51 SFGNCGYALPAIIGAKAAA----PDRPVVAIAGDGAWGMS--MMEIMTAVRHKLPVTAVVFRNRQWGAEKKNQVDFYNNR 124 (196)
T ss_pred CCcccccHHHHHHHHHHhC----CCCcEEEEEcchHHhcc--HHHHHHHHHhCCCeEEEEEECchhHHHHHHHHHHcCCC
Confidence 3589999999999998874 68899999999999874 355999999999987777 5556776432111
Q ss_pred ----ccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 016903 214 ----QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 269 (380)
Q Consensus 214 ----~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~ 269 (380)
.....|++++|++||+++++|+ ++.++.+++++|++.+|. ++|+|||+.+.+.
T Consensus 125 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~~~-~~p~liev~v~~~ 181 (196)
T cd02013 125 FVGTELESESFAKIAEACGAKGITVD--KPEDVGPALQKAIAMMAE-GKTTVIEIVCDQE 181 (196)
T ss_pred cccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhcCCC-CCeEEEEEEeCcc
Confidence 1234789999999999999999 899999999999875443 7899999999653
|
Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity. |
| >cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor | Back alignment and domain information |
|---|
Probab=99.77 E-value=3e-18 Score=151.52 Aligned_cols=116 Identities=30% Similarity=0.352 Sum_probs=95.2
Q ss_pred cccCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccc------
Q 016903 139 FTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPIS------ 212 (380)
Q Consensus 139 ~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~------ 212 (380)
....|+||+++|.|+|++++. ++++|+|++|||++++ .+++|++|.++++|+++||.||++...+...
T Consensus 42 ~~~~g~~G~~~~~a~Gaa~a~----~~~~vv~~~GDG~~~~--~~~~l~ta~~~~~~~~~iv~nN~~~~~~~~~~~~~~~ 115 (168)
T cd00568 42 STGFGAMGYGLPAAIGAALAA----PDRPVVCIAGDGGFMM--TGQELATAVRYGLPVIVVVFNNGGYGTIRMHQEAFYG 115 (168)
T ss_pred CCCchhhhhhHHHHHHHHHhC----CCCcEEEEEcCcHHhc--cHHHHHHHHHcCCCcEEEEEECCccHHHHHHHHHHcC
Confidence 445799999999999999986 4789999999999987 5689999999999999988888754443322
Q ss_pred -----cccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 213 -----DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 213 -----~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
......++.+++++||+++++|+ +++++.++++++. +.++|+|||++|
T Consensus 116 ~~~~~~~~~~~d~~~~a~~~G~~~~~v~--~~~~l~~a~~~a~----~~~~p~~i~v~~ 168 (168)
T cd00568 116 GRVSGTDLSNPDFAALAEAYGAKGVRVE--DPEDLEAALAEAL----AAGGPALIEVKT 168 (168)
T ss_pred CCcccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHH----hCCCCEEEEEEC
Confidence 22345689999999999999998 5788877777776 468999999975
|
These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes. |
| >PLN02225 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-17 Score=175.50 Aligned_cols=225 Identities=10% Similarity=0.036 Sum_probs=169.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCcccccccchhhHHHHHHHhcCC-CCcEEEc--ccccHHHHHH
Q 016903 27 DSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEA-QRQGRISFYLTTSGEEAINIASAAAIK-NDDFVVP--QYREPGVLLW 102 (380)
Q Consensus 27 ~~~~~~~~~e~l~~~y~~M~~~R~~e~~~~~~-~~~g~i~~~~~~~G~Ea~~~~~~~~l~-~~D~v~~--~yR~~~~~l~ 102 (380)
|.+.++++.++|..+-..+ |.+ .+... .+.| +.+.++.|---..+++...++ |.|.|+. .|....|-+.
T Consensus 85 P~dlk~L~~~eL~~La~Ei---R~~--li~~v~s~~G--GHl~snLGvVELTvALH~VFd~p~DkiiwDvgHQ~Y~HKiL 157 (701)
T PLN02225 85 PLQLKNLSVKELKLLADEI---RTE--LHSVLWKKTQ--KSMNPSFAAIELTLALHYVFRAPVDNILWDAVEQTYAHKVL 157 (701)
T ss_pred HHHHhhCCHHHHHHHHHHH---HHH--HHHHhhcccC--CCcCCCccHHHHHHHHHHHhCCCCCceeeccccccchhhHh
Confidence 4456778888887776665 544 22222 2333 456678898888899999997 8899887 7999999999
Q ss_pred cCCCHHHHHHHhhcCCCCCCCCCCCccccCCCC-CCccccCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcch
Q 016903 103 RGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGD 181 (380)
Q Consensus 103 ~G~~~~~~~~e~~g~~~~~~~G~~~~~H~~~~~-~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~ 181 (380)
.|.. +-|.. +. -.|+++.+...+ ..-....|+-+.+++.|+|+|.|..+++.+..||+++|||++.-|+
T Consensus 158 TGR~--~~f~~-Rq-------~~GlsGf~~r~ES~~D~f~~GHssTSiSaalG~a~ardl~g~~~~vvaVIGDGaltgGm 227 (701)
T PLN02225 158 TRRW--SAIPS-RQ-------KNGISGVTSQLESEYDSFGTGHGCNSISAGLGLAVARDIKGKRDRVVAVIDNATITAGQ 227 (701)
T ss_pred cCCh--hhcCc-cc-------cCCcCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCCcEEEEEcCcchhhhh
Confidence 9973 22321 21 233444444332 3345678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEEEcCCcccccc--------cccc--------------------------cC--CcCH-----
Q 016903 182 FHAALNFSAVTEAPVIFICRNNGWAISTP--------ISDQ--------------------------FR--SDGA----- 220 (380)
Q Consensus 182 ~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~--------~~~~--------------------------~~--~~~~----- 220 (380)
.+||||-|+..+-|+|+|+++|+.+|+.+ .... .+ ...+
T Consensus 228 a~EaLN~~g~~~~~livILNDN~mSi~~n~~~~~~~~vG~ls~~l~~l~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (701)
T PLN02225 228 AYEAMSNAGYLDSNMIVILNDSRHSLHPNMEEGSKASISALSSIMSKIQSSKIFRKFRELAKAMTKRIGKGMYEWAAKVD 307 (701)
T ss_pred HHHHHhhhhccCCCEEEEEeCCCCCCCCCCCCccCCccchHHHHHHHHhccchHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999999999999877 1100 00 0000
Q ss_pred ----------H-HHHhhcCceEEE-EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCC
Q 016903 221 ----------V-VKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 270 (380)
Q Consensus 221 ----------~-~~a~a~G~~~~~-VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~ 270 (380)
. .+++.+|+.++- |||||++++..+++.+.+. ..++|+||.++|-+..
T Consensus 308 ~~~k~~~~~~~~~lFe~lG~~Y~GpvDGHdi~~Li~~l~~~k~~--~~~~PvlvHv~T~KGk 367 (701)
T PLN02225 308 EYARGMVGPTGSTLFEELGLYYIGPVDGHNIEDLVCVLREVSSL--DSMGPVLVHVITEENR 367 (701)
T ss_pred HHhhhccCCCccCcHHHcCCeEECccCCCCHHHHHHHHHHHHcC--CCCCCEEEEEEecCCC
Confidence 1 356888999886 9999999999999988764 1149999999998776
|
|
| >cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl) | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.1e-18 Score=154.32 Aligned_cols=121 Identities=22% Similarity=0.239 Sum_probs=97.1
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccccc------
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD------ 213 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~~~------ 213 (380)
..|+||+++|.|+|+++|. ++++|||++|||+|++. ..+|.+|++++||+++||.||+ |++......
T Consensus 55 ~~GsmG~~lpaaiGa~la~----p~~~vv~i~GDG~f~m~--~~eL~Ta~~~~lpviivV~NN~~yg~~~~~q~~~~~~~ 128 (202)
T cd02006 55 QAGPLGWTVPAALGVAAAD----PDRQVVALSGDYDFQFM--IEELAVGAQHRIPYIHVLVNNAYLGLIRQAQRAFDMDY 128 (202)
T ss_pred CccchhhhhHHHHhHHhhC----CCCeEEEEEeChHhhcc--HHHHHHHHHhCCCeEEEEEeCchHHHHHHHHHHhcCcc
Confidence 3589999999999999884 68899999999999865 3669999999999888777665 665331110
Q ss_pred --------------ccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 016903 214 --------------QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 269 (380)
Q Consensus 214 --------------~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~ 269 (380)
.....|+++.|++||+++.+|+ ++.++.+++++|++.+++.++|+|||+.+.+.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~~p~liev~i~~~ 196 (202)
T cd02006 129 QVNLAFENINSSELGGYGVDHVKVAEGLGCKAIRVT--KPEELAAAFEQAKKLMAEHRVPVVVEAILERV 196 (202)
T ss_pred ccccccccccccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHHhcccCCCcEEEEEEeccc
Confidence 0013689999999999999998 89999999999986544457999999998543
|
E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors. |
| >cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC) | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.9e-18 Score=150.99 Aligned_cols=112 Identities=29% Similarity=0.305 Sum_probs=93.4
Q ss_pred cccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccccc--------
Q 016903 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD-------- 213 (380)
Q Consensus 143 g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~~~-------- 213 (380)
|+||+++|.|+|+++|. ++++|+|++|||+|+++. ++|.+|.++++|+++||.||+ |++......
T Consensus 49 g~mG~~lp~aiGaala~----~~~~vv~i~GDG~f~~~~--~el~ta~~~~~p~~~iV~nN~~~~~~~~~~~~~~~~~~~ 122 (178)
T cd02002 49 GGLGWGLPAAVGAALAN----PDRKVVAIIGDGSFMYTI--QALWTAARYGLPVTVVILNNRGYGALRSFLKRVGPEGPG 122 (178)
T ss_pred ccccchHHHHHHHHhcC----CCCeEEEEEcCchhhccH--HHHHHHHHhCCCeEEEEEcCccHHHHHHHHHHHcCCCcc
Confidence 89999999999999885 578999999999999874 679999999999988888775 887542211
Q ss_pred ---------ccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 214 ---------QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 214 ---------~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
.....++.+++++||+++.+|+ ++.++.+++++|++ .++|+|||+.+
T Consensus 123 ~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~vi~v~v 178 (178)
T cd02002 123 ENAPDGLDLLDPGIDFAAIAKAFGVEAERVE--TPEELDEALREALA----EGGPALIEVVV 178 (178)
T ss_pred cccccccccCCCCCCHHHHHHHcCCceEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEC
Confidence 1134689999999999999999 58899888888875 57999999864
|
P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors. |
| >cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.9e-17 Score=146.19 Aligned_cols=116 Identities=24% Similarity=0.307 Sum_probs=93.4
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cccccccc-------
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS------- 212 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~~------- 212 (380)
..|+||+++|.|+|+++|. ++++|+|++|||+|+++ +.| |.+|.++++|+++||.||+ |++.....
T Consensus 49 ~~g~mG~~~~~aiGa~~a~----~~~~vv~i~GDG~f~~~-~~e-l~t~~~~~lp~~~iv~NN~~~~~~~~~~~~~~~~~ 122 (178)
T cd02014 49 LLATMGNGLPGAIAAKLAY----PDRQVIALSGDGGFAML-MGD-LITAVKYNLPVIVVVFNNSDLGFIKWEQEVMGQPE 122 (178)
T ss_pred CCchhhhHHHHHHHHHHhC----CCCcEEEEEcchHHHhh-HHH-HHHHHHhCCCcEEEEEECCchhHHHHHHHHhcCCc
Confidence 4589999999999998874 67899999999999887 555 8889999999888887775 77642111
Q ss_pred --cccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 213 --DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 213 --~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
......|+.+.+++||+++.+|+ +++++.++++++++ .++|+|||+.+.+
T Consensus 123 ~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~~l~~a~~----~~~p~liev~~~~ 174 (178)
T cd02014 123 FGVDLPNPDFAKIAEAMGIKGIRVE--DPDELEAALDEALA----ADGPVVIDVVTDP 174 (178)
T ss_pred eeccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 11234689999999999999998 78888888887765 5799999999854
|
POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors. |
| >PRK06163 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-16 Score=146.51 Aligned_cols=130 Identities=20% Similarity=0.166 Sum_probs=100.6
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHc-CCCEEEEEEcC-Cccccccccc-ccCCc
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT-EAPVIFICRNN-GWAISTPISD-QFRSD 218 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~-~Lpvi~vv~NN-~~~~~~~~~~-~~~~~ 218 (380)
.|+||+++|.|+|+++|. ++++|||++|||+|++. ..+|.+|+++ ++|+++||.|| +|++...... .....
T Consensus 56 ~GsMG~glpaAiGaalA~----p~r~Vv~i~GDG~f~m~--~~eL~Ta~~~~~lpi~ivV~NN~~yg~~~~~~~~~~~~~ 129 (202)
T PRK06163 56 LGSMGLAFPIALGVALAQ----PKRRVIALEGDGSLLMQ--LGALGTIAALAPKNLTIIVMDNGVYQITGGQPTLTSQTV 129 (202)
T ss_pred ecccccHHHHHHHHHHhC----CCCeEEEEEcchHHHHH--HHHHHHHHHhcCCCeEEEEEcCCchhhcCCccCCCCCCC
Confidence 689999999999999884 68899999999999754 4669999887 68988877776 5776432211 12346
Q ss_pred CHHHHHhhcCce-EEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChhhHH
Q 016903 219 GAVVKGRAYGVR-SIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIE 288 (380)
Q Consensus 219 ~~~~~a~a~G~~-~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~ 288 (380)
|+.+.|++||++ +++|. ++.++..+++++++ .++|+|||+.+.+.. +-+..+|++.|.+
T Consensus 130 Df~~lA~a~G~~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~i~~~~-----~~~~~~~~~~~~~ 189 (202)
T PRK06163 130 DVVAIARGAGLENSHWAA--DEAHFEALVDQALS----GPGPSFIAVRIDDKP-----GVGTTERDPAQIR 189 (202)
T ss_pred CHHHHHHHCCCceEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecCCC-----CCCCCCCCHHHHH
Confidence 899999999998 67888 99999999999875 489999999986432 2244457777654
|
|
| >cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-16 Score=143.66 Aligned_cols=117 Identities=21% Similarity=0.139 Sum_probs=92.3
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Cccccccccc------
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPISD------ 213 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~~~~~~~~------ 213 (380)
..|+||+++|.|+|+++|. ++++||+++|||+|++.. +++|.+|+++++|+++||.|| .|++......
T Consensus 49 ~~g~mG~gl~~AiGa~la~----p~~~Vv~i~GDG~f~~~g-~~eL~ta~~~~l~i~vvV~nN~~~g~~~~~~~~~~~~~ 123 (178)
T cd02008 49 TCTCMGASIGVAIGMAKAS----EDKKVVAVIGDSTFFHSG-ILGLINAVYNKANITVVILDNRTTAMTGGQPHPGTGKT 123 (178)
T ss_pred ccccCccHHHHHhhHHhhC----CCCCEEEEecChHHhhcc-HHHHHHHHHcCCCEEEEEECCcceeccCCCCCCCCccc
Confidence 5799999999999999985 578999999999997532 578999999999977766555 4655432211
Q ss_pred ---ccCCcCHHHHHhhcCceEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 214 ---QFRSDGAVVKGRAYGVRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 214 ---~~~~~~~~~~a~a~G~~~~~V-dG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
.....|+.+++++||+++++| +++++.++.+++++|++ .++|+||+++.
T Consensus 124 ~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~~~~al~~a~~----~~gp~lI~v~~ 176 (178)
T cd02008 124 LTEPTTVIDIEALVRAIGVKRVVVVDPYDLKAIREELKEALA----VPGVSVIIAKR 176 (178)
T ss_pred ccCCCCccCHHHHHHHCCCCEEEecCccCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 112368999999999999998 67788877788888875 47999999864
|
IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA. |
| >cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.9e-17 Score=145.48 Aligned_cols=115 Identities=25% Similarity=0.335 Sum_probs=91.4
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccc------c--
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI------S-- 212 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~------~-- 212 (380)
.|+||+++|.|+|+++|. ++++|||++|||+|++. ..+|.+|+++++|+++||.||+ |++.... .
T Consensus 49 ~g~mG~~lp~aiGa~la~----~~~~vv~i~GDG~f~~~--~~eL~ta~~~~lpi~ivV~nN~~~~~~~~~~~~~~~~~~ 122 (186)
T cd02015 49 LGTMGFGLPAAIGAKVAR----PDKTVICIDGDGSFQMN--IQELATAAQYNLPVKIVILNNGSLGMVRQWQELFYEGRY 122 (186)
T ss_pred ccchhchHHHHHHHHHhC----CCCeEEEEEcccHHhcc--HHHHHHHHHhCCCeEEEEEECCccHHHHHHHHHHcCCce
Confidence 589999999999998884 67899999999999864 4569999999999888777665 5543210 0
Q ss_pred ---cccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 213 ---DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 213 ---~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
......|+++.|++||+++.+|+ +.+++.+++++|.+ .++|+|||+.|.+
T Consensus 123 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~~~~ 175 (186)
T cd02015 123 SHTTLDSNPDFVKLAEAYGIKGLRVE--KPEELEAALKEALA----SDGPVLLDVLVDP 175 (186)
T ss_pred eeccCCCCCCHHHHHHHCCCceEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 11134689999999999999999 67888777777764 5899999999964
|
AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD. |
| >cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.3e-17 Score=147.69 Aligned_cols=117 Identities=17% Similarity=0.202 Sum_probs=92.8
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEE-EcCCccccccccc------
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPISD------ 213 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv-~NN~~~~~~~~~~------ 213 (380)
..|+||+++|.|+|+++|. ++++|||++|||+|+++. .+|.+|++++||+++|| +||+|++......
T Consensus 46 ~~gsmG~~lpaAiGa~la~----p~~~vv~i~GDGsf~m~~--~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~ 119 (205)
T cd02003 46 GYSCMGYEIAAGLGAKLAK----PDREVYVLVGDGSYLMLH--SEIVTAVQEGLKIIIVLFDNHGFGCINNLQESTGSGS 119 (205)
T ss_pred CcchhhhHHHHHHHHHHhC----CCCeEEEEEccchhhccH--HHHHHHHHcCCCCEEEEEECCccHHHHHHHHHhcCcc
Confidence 4589999999999998874 688999999999998753 56999999999966655 5555765321100
Q ss_pred -----------------ccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 016903 214 -----------------QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 269 (380)
Q Consensus 214 -----------------~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~ 269 (380)
.....|+.++|++||+++.+|+ +++++.+++++|++ .++|+|||+.+.+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIeV~v~~~ 186 (205)
T cd02003 120 FGTEFRDRDQESGQLDGALLPVDFAANARSLGARVEKVK--TIEELKAALAKAKA----SDRTTVIVIKTDPK 186 (205)
T ss_pred ccchhcccccccccccCCCCCCCHHHHHHhCCCEEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEeecc
Confidence 0124689999999999999997 99999999998874 58999999999653
|
viciae IolD. IolD plays an important role in myo-inositol catabolism. |
| >cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE) | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.9e-16 Score=142.74 Aligned_cols=115 Identities=17% Similarity=0.152 Sum_probs=92.3
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCC-CEEE-EEEcCCccccccccccc-CCc
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIF-ICRNNGWAISTPISDQF-RSD 218 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~-vv~NN~~~~~~~~~~~~-~~~ 218 (380)
.|+||+++|.|+|+++|.+ ++|||++|||+|+++ ..++.+|.++++ |+++ |++||+|++........ ...
T Consensus 41 ~g~mG~~lp~AiGaala~~-----~~vv~i~GDG~f~m~--~~el~ta~~~~~~~l~vvV~NN~~~~~~~~~~~~~~~~~ 113 (179)
T cd03372 41 LGSMGLASSIGLGLALAQP-----RKVIVIDGDGSLLMN--LGALATIAAEKPKNLIIVVLDNGAYGSTGNQPTHAGKKT 113 (179)
T ss_pred ccchhhHHHHHHHHHhcCC-----CcEEEEECCcHHHhC--HHHHHHHHHcCCCCEEEEEEcCccccccCCCCCCCCCCC
Confidence 7999999999999999853 789999999999754 356889999996 6655 45777788765432222 256
Q ss_pred CHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCC
Q 016903 219 GAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 270 (380)
Q Consensus 219 ~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~ 270 (380)
++.++|++||+++.+|+| +++++.+++++++ ++|+|||+.|.+..
T Consensus 114 d~~~lA~a~G~~~~~v~~-~~~el~~al~~a~------~gp~lIev~~~~~~ 158 (179)
T cd03372 114 DLEAVAKACGLDNVATVA-SEEAFEKAVEQAL------DGPSFIHVKIKPGN 158 (179)
T ss_pred CHHHHHHHcCCCeEEecC-CHHHHHHHHHHhc------CCCEEEEEEEcCCC
Confidence 899999999999999997 7888888887765 58999999996544
|
M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors. |
| >cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-16 Score=143.92 Aligned_cols=116 Identities=20% Similarity=0.288 Sum_probs=93.9
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccccccccc-------
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPIS------- 212 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~~~~~~~------- 212 (380)
..|+||+++|.|+|+++|. ++++|||++|||+|++. ..+|.+|+++++|+++||.|| +|++....+
T Consensus 46 ~~g~mG~~lp~aiGa~la~----~~~~vv~i~GDG~f~m~--~~eL~ta~~~~l~vi~vV~NN~~~g~~~~~~~~~~~~~ 119 (177)
T cd02010 46 GLATMGVALPGAIGAKLVY----PDRKVVAVSGDGGFMMN--SQELETAVRLKIPLVVLIWNDNGYGLIKWKQEKEYGRD 119 (177)
T ss_pred CChhhhhHHHHHHHHHHhC----CCCcEEEEEcchHHHhH--HHHHHHHHHHCCCeEEEEEECCcchHHHHHHHHhcCCc
Confidence 4589999999999999884 68899999999999754 466999999999977766555 577643111
Q ss_pred --cccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 213 --DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 213 --~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
......|+++.|++||+++++|+ +++++.++++++++ .++|+|||+.+.+
T Consensus 120 ~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~~~~ 171 (177)
T cd02010 120 SGVDFGNPDFVKYAESFGAKGYRIE--SADDLLPVLERALA----ADGVHVIDCPVDY 171 (177)
T ss_pred ccCcCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecc
Confidence 11134689999999999999998 89999999999876 4899999999854
|
ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity. |
| >cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase) | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.7e-17 Score=141.60 Aligned_cols=113 Identities=13% Similarity=0.052 Sum_probs=91.9
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHc-CCCEEEEEE-cCCcccccccccccCCcC
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT-EAPVIFICR-NNGWAISTPISDQFRSDG 219 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~-~Lpvi~vv~-NN~~~~~~~~~~~~~~~~ 219 (380)
.|+||.++|.|+|+++|. +++|||++|||+|++. ..+|.+++++ ++|+++||. |+.|++...........|
T Consensus 41 ~gsmG~~lp~AiGa~~a~-----~~~Vv~i~GDG~f~m~--~~el~t~~~~~~~~i~~vV~nN~~~g~~~~~~~~~~~~d 113 (157)
T cd02001 41 LGSMGLAGSIGLGLALGL-----SRKVIVVDGDGSLLMN--PGVLLTAGEFTPLNLILVVLDNRAYGSTGGQPTPSSNVN 113 (157)
T ss_pred ecchhhHHHHHHHHHhcC-----CCcEEEEECchHHHhc--ccHHHHHHHhcCCCEEEEEEeCccccccCCcCCCCCCCC
Confidence 799999999999999985 2789999999999754 2558999998 599877775 555776543222223579
Q ss_pred HHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016903 220 AVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 220 ~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~ 267 (380)
+.++|++||+++++|+ +++++.++++++++ .++|++|++.+.
T Consensus 114 ~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~vi~v~i~ 155 (157)
T cd02001 114 LEAWAAACGYLVLSAP--LLGGLGSEFAGLLA----TTGPTLLHAPIA 155 (157)
T ss_pred HHHHHHHCCCceEEcC--CHHHHHHHHHHHHh----CCCCEEEEEEec
Confidence 9999999999999997 89999999999886 479999999884
|
Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors. |
| >TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-16 Score=143.65 Aligned_cols=113 Identities=19% Similarity=0.236 Sum_probs=91.0
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCC-CEEEEEEcCC-ccccccccccc-CCc
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNG-WAISTPISDQF-RSD 218 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~-~~~~~~~~~~~-~~~ 218 (380)
.|+||.++|.|+|+++|. +++|||++|||+|+++. ++|.+|+++++ |+++||.||+ |++...+.... ...
T Consensus 41 ~gsmG~~lpaAiGa~la~-----~~~Vv~i~GDG~f~m~~--~el~ta~~~~~~pv~~vV~NN~~yg~~~~q~~~~~~~~ 113 (181)
T TIGR03846 41 LGSMGLASSIGLGLALAT-----DRTVIVIDGDGSLLMNL--GVLPTIAAESPKNLILVILDNGAYGSTGNQPTPASRRT 113 (181)
T ss_pred ccccccHHHHHHHHHHcC-----CCcEEEEEcchHHHhhh--hHHHHHHHhCCCCeEEEEEeCCccccccCcCCCCCCCC
Confidence 789999999999999884 67899999999998653 67999999995 9888886665 77654221111 256
Q ss_pred CHHHHHhhcCceEEE-EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 219 GAVVKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 219 ~~~~~a~a~G~~~~~-VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
|+++.|++||+++.+ |+ ++.++.++++ +++ .++|+||++.+.+
T Consensus 114 d~~~lA~a~G~~~~~~v~--~~~~l~~al~-a~~----~~~p~li~v~~~~ 157 (181)
T TIGR03846 114 DLELVAKAAGIRNVEKVA--DEEELRDALK-ALA----MKGPTFIHVKVKP 157 (181)
T ss_pred CHHHHHHHCCCCeEEEeC--CHHHHHHHHH-HHc----CCCCEEEEEEeCC
Confidence 899999999999998 76 8899988885 553 5799999999854
|
Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363). |
| >cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.5e-16 Score=141.33 Aligned_cols=118 Identities=20% Similarity=0.137 Sum_probs=93.6
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCC-CEEEEEEcCC-cccccccccccCCc
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNG-WAISTPISDQFRSD 218 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~-~~~~~~~~~~~~~~ 218 (380)
.+|+||+++|.|+|+++|. +++.|||++|||+|++ ..++|.+++++++ |+++||.||+ |++...........
T Consensus 46 ~~g~mG~~lpaAiGaala~----p~~~Vv~i~GDG~f~m--~~~eL~ta~~~~l~~i~ivV~NN~~yg~~~~~~~~~~~~ 119 (188)
T cd03371 46 TVGSMGHASQIALGIALAR----PDRKVVCIDGDGAALM--HMGGLATIGGLAPANLIHIVLNNGAHDSVGGQPTVSFDV 119 (188)
T ss_pred ecCccccHHHHHHHHHHhC----CCCcEEEEeCCcHHHh--hccHHHHHHHcCCCCcEEEEEeCchhhccCCcCCCCCCC
Confidence 3499999999999999885 6789999999999975 3467999999997 6666666554 66543222222346
Q ss_pred CHHHHHhhcCceE-EEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCC
Q 016903 219 GAVVKGRAYGVRS-IRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 270 (380)
Q Consensus 219 ~~~~~a~a~G~~~-~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~ 270 (380)
++++.|++||+++ .+|+ ++.++.++++++++ .++|+|||+.+-+..
T Consensus 120 d~~~~A~a~G~~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~~~~~~ 166 (188)
T cd03371 120 SLPAIAKACGYRAVYEVP--SLEELVAALAKALA----ADGPAFIEVKVRPGS 166 (188)
T ss_pred CHHHHHHHcCCceEEecC--CHHHHHHHHHHHHh----CCCCEEEEEEecCCC
Confidence 8999999999997 5788 89999999988875 479999999996654
|
PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors. |
| >cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.1e-16 Score=141.77 Aligned_cols=117 Identities=23% Similarity=0.269 Sum_probs=92.7
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCE-EEEEEcCCccccccccc------
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPV-IFICRNNGWAISTPISD------ 213 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpv-i~vv~NN~~~~~~~~~~------ 213 (380)
..|+||+++|.|+|+++|. ++++|+|++|||+|++. ++| |.+|+++++|+ ++|++||+|++......
T Consensus 48 ~~g~mG~~l~~aiGaala~----~~~~vv~i~GDG~f~~~-~~e-l~ta~~~~~p~~ivV~nN~~~~~~~~~~~~~~~~~ 121 (183)
T cd02005 48 LWGSIGYSVPAALGAALAA----PDRRVILLVGDGSFQMT-VQE-LSTMIRYGLNPIIFLINNDGYTIERAIHGPEASYN 121 (183)
T ss_pred chhhHhhhHHHHHHHHHhC----CCCeEEEEECCchhhcc-HHH-HHHHHHhCCCCEEEEEECCCcEEEEEeccCCcCcc
Confidence 4589999999999999885 57899999999999764 566 88999999985 45556667876432111
Q ss_pred ccCCcCHHHHHhhcC----ceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 214 QFRSDGAVVKGRAYG----VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 214 ~~~~~~~~~~a~a~G----~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
.....|+.+.|++|| +++++|+ ++.++.++++++++ ..++|+|||+.+.|
T Consensus 122 ~~~~~d~~~ia~a~G~~~~~~~~~v~--~~~el~~al~~a~~---~~~~p~liev~~~~ 175 (183)
T cd02005 122 DIANWNYTKLPEVFGGGGGGLSFRVK--TEGELDEALKDALF---NRDKLSLIEVILPK 175 (183)
T ss_pred cCCCCCHHHHHHHhCCCccccEEEec--CHHHHHHHHHHHHh---cCCCcEEEEEEcCc
Confidence 122468999999999 7898887 89999999998886 14799999999865
|
PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors. |
| >PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.3e-16 Score=136.48 Aligned_cols=114 Identities=28% Similarity=0.394 Sum_probs=92.4
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cccccccc-------
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS------- 212 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~~------- 212 (380)
..++||.++|.|+|+++| .++++|||++|||+|... ..+|.+|.++++|+++||.||+ |++.....
T Consensus 26 ~~g~mG~~~~~aiGa~~a----~p~~~vv~i~GDG~f~~~--~~el~ta~~~~~~v~~vv~nN~~~~~~~~~~~~~~~~~ 99 (153)
T PF02775_consen 26 GFGSMGYALPAAIGAALA----RPDRPVVAITGDGSFLMS--LQELATAVRYGLPVVIVVLNNGGYGMTGGQQTPFGGGR 99 (153)
T ss_dssp TTT-TTTHHHHHHHHHHH----STTSEEEEEEEHHHHHHH--GGGHHHHHHTTSSEEEEEEESSBSHHHHHHHHHTTSTC
T ss_pred CccccCCHHHhhhHHHhh----cCcceeEEecCCcceeec--cchhHHHhhccceEEEEEEeCCcceEeccccccCcCcc
Confidence 478999999999999997 478999999999999765 4569999999999888776665 55432211
Q ss_pred ---cc---cCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016903 213 ---DQ---FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 213 ---~~---~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~ 264 (380)
.. ....|+.+.+++||+++.+|+..|++++.+++++|++ .++|+|||+
T Consensus 100 ~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~~el~~al~~a~~----~~gp~vIeV 153 (153)
T PF02775_consen 100 FSGVDGKTFPNPDFAALAEAFGIKGARVTTPDPEELEEALREALE----SGGPAVIEV 153 (153)
T ss_dssp HHSTBTTTSTTCGHHHHHHHTTSEEEEESCHSHHHHHHHHHHHHH----SSSEEEEEE
T ss_pred cccccccccccCCHHHHHHHcCCcEEEEccCCHHHHHHHHHHHHh----CCCcEEEEc
Confidence 11 3457899999999999999996666999999999985 589999996
|
It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A .... |
| >PRK07524 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.5e-16 Score=160.44 Aligned_cols=118 Identities=26% Similarity=0.308 Sum_probs=97.7
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccccccc---------c
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTP---------I 211 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~~~~~---------~ 211 (380)
.|+||+++|.|+|+++|. ++++|||++|||+|++. . .+|.+|++++||+++||.|| +|++... .
T Consensus 406 ~g~mG~~lp~aiGa~lA~----p~~~vv~i~GDG~f~~~-~-~el~ta~~~~lpi~~vV~NN~~~g~i~~~~~~~~~~~~ 479 (535)
T PRK07524 406 YGTLGYGLPAAIGAALGA----PERPVVCLVGDGGLQFT-L-PELASAVEADLPLIVLLWNNDGYGEIRRYMVARDIEPV 479 (535)
T ss_pred cccccchHHHHHHHHHhC----CCCcEEEEEcchHHhhh-H-HHHHHHHHhCCCeEEEEEECCchHHHHHHHHHhcCCcc
Confidence 589999999999999884 78899999999999854 3 44999999999988877777 6764321 1
Q ss_pred ccccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCC
Q 016903 212 SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGH 271 (380)
Q Consensus 212 ~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~g 271 (380)
.......|+.+.|++||+++++|+ +++++.++++++++ .++|+|||+.++|+.+
T Consensus 480 ~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~~~~~~~ 533 (535)
T PRK07524 480 GVDPYTPDFIALARAFGCAAERVA--DLEQLQAALRAAFA----RPGPTLIEVDQACWFA 533 (535)
T ss_pred ccCCCCCCHHHHHHHCCCcEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEECCcccc
Confidence 111234689999999999999998 99999999988875 5899999999999875
|
|
| >cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD) | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.9e-16 Score=137.73 Aligned_cols=112 Identities=24% Similarity=0.227 Sum_probs=89.8
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccccc-------
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD------- 213 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~~~------- 213 (380)
.+.||+++|.|+|+++|. +++|||++|||+|++. ..+|.+|.++++|+++||.||+ |++......
T Consensus 50 ~g~mG~~l~~aiGa~la~-----~~~Vv~i~GDGsf~m~--~~eL~ta~~~~l~v~ivVlNN~~~g~~~~~~~~~~~~~~ 122 (175)
T cd02009 50 ASGIDGTLSTALGIALAT-----DKPTVLLTGDLSFLHD--LNGLLLGKQEPLNLTIVVINNNGGGIFSLLPQASFEDEF 122 (175)
T ss_pred ccchhhHHHHHHHHHhcC-----CCCEEEEEehHHHHHh--HHHHHhccccCCCeEEEEEECCCCchheeccCCcccchh
Confidence 378999999999999884 6789999999999864 4669999999999777666665 664321110
Q ss_pred --cc---CCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 214 --QF---RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 214 --~~---~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
.. ...|+.+.|++||+++.+|+ +++++.++++++++ .++|+|||+.+
T Consensus 123 ~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~v 174 (175)
T cd02009 123 ERLFGTPQGLDFEHLAKAYGLEYRRVS--SLDELEQALESALA----QDGPHVIEVKT 174 (175)
T ss_pred hhhhcCCCCCCHHHHHHHcCCCeeeCC--CHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 11 24689999999999999998 89999999998875 48999999976
|
SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity. |
| >PRK08327 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.64 E-value=1e-15 Score=161.02 Aligned_cols=119 Identities=23% Similarity=0.280 Sum_probs=99.8
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Cccccccc---------
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI--------- 211 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~~~~~~--------- 211 (380)
.|+||+++|.|+|+++| .++++|||++|||+|+++...+++++|+++++|+++||.|| +|++....
T Consensus 429 ~gsmG~~lp~aiGa~la----~p~~~vv~i~GDG~f~~~~~e~~l~ta~~~~l~~~ivv~NN~~yg~~~~~~~~~~~~~~ 504 (569)
T PRK08327 429 AGGLGWALGAALGAKLA----TPDRLVIATVGDGSFIFGVPEAAHWVAERYGLPVLVVVFNNGGWLAVKEAVLEVYPEGY 504 (569)
T ss_pred CCCCCcchHHHHHHhhc----CCCCeEEEEecCcceeecCcHHHHHHHHHhCCCEEEEEEeCcccccchhHHhhhCcccc
Confidence 58999999999999887 47899999999999998765567999999999988888777 57653210
Q ss_pred --------cccc-CCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 212 --------SDQF-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 212 --------~~~~-~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
.... +..|++++|++||+++.+|+ +++++.++++++++.+++++||+|||+.+
T Consensus 505 ~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~gp~liev~v 566 (569)
T PRK08327 505 AARKGTFPGTDFDPRPDFAKIAEAFGGYGERVE--DPEELKGALRRALAAVRKGRRSAVLDVIV 566 (569)
T ss_pred cccccccccccCCCCCCHHHHHHhCCCCceEeC--CHHHHHHHHHHHHHHHhcCCCcEEEEEEc
Confidence 0111 35689999999999999998 99999999999998777778999999987
|
|
| >COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-13 Score=141.87 Aligned_cols=269 Identities=17% Similarity=0.173 Sum_probs=179.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcccccccchhhH--HHHHHHhcCCCC------cEEEcc-cccHH---HHH
Q 016903 35 EGVAIKMYNDMVTLQTMDTIFYEAQRQ-GRISFYLTTSGEEA--INIASAAAIKND------DFVVPQ-YREPG---VLL 101 (380)
Q Consensus 35 ~e~l~~~y~~M~~~R~~e~~~~~~~~~-g~i~~~~~~~G~Ea--~~~~~~~~l~~~------D~v~~~-yR~~~---~~l 101 (380)
..+|.+-+|+.++=...-..+. ..+. -+++-++++.-.-| --|+....+++. |.|+-. |-..+ -.+
T Consensus 74 d~~lErrir~~irWna~a~vlR-askk~l~lGGH~aSfaSsatlyev~fnhffr~~~~~~ggDlV~~qgHaSPg~yAraf 152 (887)
T COG2609 74 DLELERRIRSLIRWNAHAMVLR-ASKKGLELGGHIASFASSATLYEVGFNHFFRAKSEKDGGDLVFFQGHASPGIYARAF 152 (887)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH-ccCCCCCccchhhhhhhHHHHHHHHHHHHhcCcCCCCCCceEEEecCCCchHHHHHH
Confidence 3455555666555555522222 2222 23433333321111 123344456654 988863 54443 334
Q ss_pred HcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCC-CCcc-ccCcccccchHHHHHHHHHhhhc-------CCCCeeEEEe
Q 016903 102 WRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HNYF-TVSSTIATQLPHAVGAAYALKMD-------RKDACAVTYF 172 (380)
Q Consensus 102 ~~G~~~~~~~~e~~g~~~~~~~G~~~~~H~~~~~-~~~~-~~~g~lG~~lp~A~G~A~A~k~~-------~~~~~vv~~~ 172 (380)
..|...++-|..|+.-. .|.+++++|.... +.++ ..++|||-|...|+=.|+-.|+. .++++|+||+
T Consensus 153 LeGRlseeqLdnFRqev----~g~gl~SYPhp~lmpdfwqFpTvSmGLGp~~aiyqArf~kYL~~RGl~~~~~~~v~afL 228 (887)
T COG2609 153 LEGRLTEEQLDNFRQEV----DGKGLSSYPHPKLMPDFWQFPTVSMGLGPIQAIYQARFLKYLEARGLKDTSDQKVWAFL 228 (887)
T ss_pred HhccccHHHHHHHHHhc----cCCCCCCCCCCcCCccccccCcccccccHHHHHHHHHHHHHHHhcCCcCCCCCeEEEEe
Confidence 46877777777777643 3777887776543 3333 35799999999999999988863 4678999999
Q ss_pred CccccCcchHHHHHHHHHHcCC-CEEEEEEcCCcccccccccccC-CcCHHHHHhhcCceEEEE----------------
Q 016903 173 GDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFR-SDGAVVKGRAYGVRSIRV---------------- 234 (380)
Q Consensus 173 GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~~~~~~~~~~~~~-~~~~~~~a~a~G~~~~~V---------------- 234 (380)
|||++.|+...+++.+|++.+| |+||||+.|....++|+..... ...+...+++.||.+++|
T Consensus 229 GDgEmDEpes~gAi~~A~re~LdNlifVincNlQrLDgpVrgngkiiqelE~~FrgAGW~VikviWg~~wd~ll~kd~~g 308 (887)
T COG2609 229 GDGEMDEPESRGAITEAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGRRWDELLAKDTGG 308 (887)
T ss_pred cCcccCCchhhHHHHHHHHhcCCceEEEEecchhhcCCcccCCchhHHHHHHHhccCCceEEEEEecccHHHHhcccCcc
Confidence 9999999999999999999999 9999999999999988765321 234667889999999965
Q ss_pred -----------------------------------------------------eCCCHHHHHHHHHHHHHHhhccCCcEE
Q 016903 235 -----------------------------------------------------DGNDALAIYSAVHAAREMAIGEGRPIL 261 (380)
Q Consensus 235 -----------------------------------------------------dG~D~~av~~a~~~a~~~ar~~~gP~l 261 (380)
-|||+..|++|+++|.+. .++|++
T Consensus 309 kL~~~m~e~~dgdyqt~kakdGayvRehff~~~Pe~~aLVa~~tD~diw~L~rGGHD~~ki~aA~~~A~~~---kg~Ptv 385 (887)
T COG2609 309 KLRQLMNETVDGDYQTFKAKDGAYVREHFFGRYPETAALVADMTDDDIWALNRGGHDPEKVYAAFKKAQEH---KGRPTV 385 (887)
T ss_pred hHHHHHHhcccchhhhhcccccHHHHHHHhccChHHHHHHHhccHHHHHHHhcCCCCHHHHHHHHHHHhcC---CCCceE
Confidence 489999999999999975 458999
Q ss_pred EEEEeecCCCCCCCCCCCCCCChhhHHHHHhcCChHHHHHHHHHHcCCCCHHHHHH
Q 016903 262 IEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESE 317 (380)
Q Consensus 262 Ie~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~e~~~ 317 (380)
|.++|.+.+|--.+- +.-......+.+ ..|-|..||+++-= -++++|+++
T Consensus 386 ilA~TIKGyglg~~~--eg~n~aHq~kkm--~~~~l~~~Rdr~~i--pvsd~e~e~ 435 (887)
T COG2609 386 ILAKTIKGYGLGEAA--EGKNIAHQVKKM--TPDQLKEFRDRFGI--PVSDAELEE 435 (887)
T ss_pred EEEeeeccccCchhh--cccchhhhhhcC--CHHHHHHHHhhcCC--CCchhhhhc
Confidence 999999888643211 111122223222 24566677777621 256666665
|
|
| >TIGR01504 glyox_carbo_lig glyoxylate carboligase | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-15 Score=159.87 Aligned_cols=119 Identities=21% Similarity=0.242 Sum_probs=95.4
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccccc-------
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD------- 213 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~~~------- 213 (380)
.|+||+++|.|+|+++|. ++++||+++|||+|++. ..+|.+|.+|+||+++||.||+ |++......
T Consensus 417 ~gsmG~glpaaiGa~lA~----pdr~Vv~i~GDG~f~m~--~~EL~Ta~r~~lpvv~iV~NN~~yg~i~~~q~~~~~~~~ 490 (588)
T TIGR01504 417 AGPLGWTIPAALGVCAAD----PKRNVVALSGDYDFQFM--IEELAVGAQHNIPYIHVLVNNAYLGLIRQAQRAFDMDYC 490 (588)
T ss_pred cccccchHhHHHhhhhhC----CCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhccccc
Confidence 588999999999999884 78899999999999875 3569999999999777666665 765321100
Q ss_pred ---cc----------CCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 214 ---QF----------RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 214 ---~~----------~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
.. ...||++.|++||+++.+|+ +++++.+++++|++.+++.++|+|||+.+.+
T Consensus 491 ~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~~~~~~~~p~lIeV~i~~ 556 (588)
T TIGR01504 491 VQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF--KPEEIAPAFEQAKALMAEHRVPVVVEVILER 556 (588)
T ss_pred ceeeccccccccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEecc
Confidence 00 13689999999999999998 9999999999998644345899999999954
|
Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism. |
| >cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.2e-15 Score=134.90 Aligned_cols=115 Identities=17% Similarity=0.174 Sum_probs=88.8
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCcccc-CcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccccc-c----
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD-Q---- 214 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~-~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~~~-~---- 214 (380)
.++||.++|.|+|+++|. ++++||++.|||++ +.+ ..+|.+|.++++|+++||.||+ |++...... .
T Consensus 50 ~g~mG~glpaAiGa~la~----p~r~Vv~i~GDGs~f~m~--~~eL~ta~~~~lpv~iiVlnN~~yg~~~~~~~~~~~~~ 123 (193)
T cd03375 50 HTLHGRALAVATGVKLAN----PDLTVIVVSGDGDLAAIG--GNHFIHAARRNIDITVIVHNNQIYGLTKGQASPTTPEG 123 (193)
T ss_pred hhhhccHHHHHHHHHHhC----CCCeEEEEeccchHhhcc--HHHHHHHHHhCCCeEEEEEcCcccccCCCccCCCCCCC
Confidence 388999999999998874 78999999999994 544 3569999999999887776665 665432111 0
Q ss_pred -----------cCCcCHHHHHhhcCceEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 215 -----------FRSDGAVVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 215 -----------~~~~~~~~~a~a~G~~~~-~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
....|+.+.++++|++++ ++.-.++.++.+++++|++ .++|+|||+.+
T Consensus 124 ~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~al~----~~gp~vIev~~ 183 (193)
T cd03375 124 FKTKTTPYGNIEEPFNPLALALAAGATFVARGFSGDIKQLKEIIKKAIQ----HKGFSFVEVLS 183 (193)
T ss_pred CcccCCCCCCCCCCCCHHHHHHHCCCCEEEEEecCCHHHHHHHHHHHHh----cCCCEEEEEEC
Confidence 113589999999999985 2233489999999999986 48999999975
|
In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity. |
| >PRK08266 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.9e-15 Score=155.69 Aligned_cols=118 Identities=27% Similarity=0.345 Sum_probs=96.2
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccccccccc--------
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPIS-------- 212 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~~~~~~~-------- 212 (380)
.|+||+++|.|+|++++ .++++|||++|||+|+++ .++|.+|.+++||+++||.|| +|++....+
T Consensus 401 ~GsmG~~lp~aiGa~la----~p~~~vv~v~GDG~f~~~--~~eL~ta~~~~lpv~ivv~NN~~y~~~~~~~~~~~~~~~ 474 (542)
T PRK08266 401 QGTLGYGFPTALGAKVA----NPDRPVVSITGDGGFMFG--VQELATAVQHNIGVVTVVFNNNAYGNVRRDQKRRFGGRV 474 (542)
T ss_pred CcccccHHHHHHHHHHh----CCCCcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCCc
Confidence 58999999999999877 478899999999999986 477999999999988877766 587542111
Q ss_pred --cccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCC
Q 016903 213 --DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGH 271 (380)
Q Consensus 213 --~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~g 271 (380)
......|+.++|++||+++.+|+ +++++.++++++++ .++|+|||+.|+|...
T Consensus 475 ~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~i~~~~~ 529 (542)
T PRK08266 475 VASDLVNPDFVKLAESFGVAAFRVD--SPEELRAALEAALA----HGGPVLIEVPVPRGSE 529 (542)
T ss_pred ccCCCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh----CCCcEEEEEEecCCCC
Confidence 01123689999999999999998 78899888888875 5789999999987654
|
|
| >PRK07092 benzoylformate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=5e-15 Score=154.48 Aligned_cols=113 Identities=29% Similarity=0.367 Sum_probs=93.4
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccc---------
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI--------- 211 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~--------- 211 (380)
.|+||+++|.|+|+++|. ++++|+|++|||+|+++. ++|++|.+++||+++||.||+ |++....
T Consensus 406 ~g~mG~~lp~aiGa~la~----p~~~vv~i~GDG~f~~~~--~eL~ta~~~~lp~~~vv~NN~~~~~~~~~~~~~~~~~~ 479 (530)
T PRK07092 406 SGGLGYGLPAAVGVALAQ----PGRRVIGLIGDGSAMYSI--QALWSAAQLKLPVTFVILNNGRYGALRWFAPVFGVRDV 479 (530)
T ss_pred CCcccchHHHHHHHHHhC----CCCeEEEEEeCchHhhhH--HHHHHHHHhCCCcEEEEEeChHHHHHHHHHHhhCCCCC
Confidence 689999999999999884 678999999999999863 779999999999888887777 8764321
Q ss_pred -ccccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 212 -SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 212 -~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
.......++.+++++||+++++|+ ++.++.++++++.+ .++|+|||+.|
T Consensus 480 ~~~~~~~~d~~~~a~~~G~~~~~v~--~~~~l~~al~~a~~----~~~p~liev~~ 529 (530)
T PRK07092 480 PGLDLPGLDFVALARGYGCEAVRVS--DAAELADALARALA----ADGPVLVEVEV 529 (530)
T ss_pred CCCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEc
Confidence 111235689999999999999998 78888887777764 68999999986
|
|
| >PRK06154 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.1e-15 Score=155.56 Aligned_cols=118 Identities=24% Similarity=0.238 Sum_probs=95.0
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccccc-------
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD------- 213 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~~~------- 213 (380)
.|+||+++|.|+|+++|. ++++|||++|||+|++. ..+|.+|++++||+++||.||+ |++......
T Consensus 430 ~gsmG~glpaaiGa~la~----p~r~Vv~i~GDG~f~m~--~~EL~Ta~r~~lpi~~vV~NN~~yg~~~~~~~~~~~~~~ 503 (565)
T PRK06154 430 TTQLGYGLGLAMGAKLAR----PDALVINLWGDAAFGMT--GMDFETAVRERIPILTILLNNFSMGGYDKVMPVSTTKYR 503 (565)
T ss_pred CcccccHHHHHHHHHHhC----CCCcEEEEEcchHHhcc--HHHHHHHHHhCCCeEEEEEECCccceeehhhhhhcCccc
Confidence 589999999999999884 68899999999999865 3669999999999888777665 664321110
Q ss_pred -ccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 214 -QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 214 -~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
.....||+++|++||+++.+|+ +++++.+++++|++..+ .++|+|||+.+.+
T Consensus 504 ~~~~~~df~~lA~a~G~~g~~V~--~~~el~~al~~a~~~~~-~~~p~lIev~v~~ 556 (565)
T PRK06154 504 ATDISGDYAAIARALGGYGERVE--DPEMLVPALLRALRKVK-EGTPALLEVITSE 556 (565)
T ss_pred ccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhcc-CCCeEEEEEEeCh
Confidence 1113589999999999999999 99999999999986432 3689999999844
|
|
| >PRK12474 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.8e-15 Score=154.98 Aligned_cols=113 Identities=28% Similarity=0.232 Sum_probs=91.7
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccc---------
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI--------- 211 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~--------- 211 (380)
.|+||+++|.|+|+++|. ++++|||++|||+|++. ..+|.+|.+++||+++||.||+ |++....
T Consensus 388 ~gsmG~glpaAiGa~lA~----p~r~vv~i~GDG~f~m~--~qEL~Ta~r~~lpv~iiV~NN~~y~~i~~~~~~~~~~~~ 461 (518)
T PRK12474 388 GGSIGQGLPLAAGAAVAA----PDRKVVCPQGDGGAAYT--MQALWTMARENLDVTVVIFANRSYAILNGELQRVGAQGA 461 (518)
T ss_pred CCccCccHHHHHHHHHHC----CCCcEEEEEcCchhcch--HHHHHHHHHHCCCcEEEEEcCCcchHHHHHHHhhcCCCC
Confidence 599999999999999985 78899999999999864 3669999999999777776665 7653211
Q ss_pred c------c--ccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 212 S------D--QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 212 ~------~--~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
. . ..+..||+++|++||+++.+|+ +++++.+++++|++ .++|+|||+.+
T Consensus 462 ~~~~~~~~~~~~~~~d~~~lA~a~G~~~~rv~--~~~eL~~al~~a~~----~~~p~liev~~ 518 (518)
T PRK12474 462 GRNALSMLDLHNPELNWMKIAEGLGVEASRAT--TAEEFSAQYAAAMA----QRGPRLIEAMI 518 (518)
T ss_pred CccccccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHc----CCCCEEEEEEC
Confidence 0 0 0112589999999999999999 89999999998875 48999999864
|
|
| >COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.6e-15 Score=154.77 Aligned_cols=118 Identities=27% Similarity=0.365 Sum_probs=97.2
Q ss_pred ccCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cccccccccccC--
Q 016903 140 TVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISDQFR-- 216 (380)
Q Consensus 140 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~~~~~~-- 216 (380)
+..|+||.++|.|+|++++. +++.|||++|||+|++. .++|.+|.++++|+++||.||+ |++....+....
T Consensus 405 ~~~GtMG~glPaAIGAkla~----P~r~Vv~i~GDG~F~m~--~qEL~Ta~r~~lpv~ivv~nN~~~g~v~~~q~~~~~~ 478 (550)
T COG0028 405 GGLGTMGFGLPAAIGAKLAA----PDRKVVAIAGDGGFMMN--GQELETAVRYGLPVKIVVLNNGGYGMVRQWQELFYGG 478 (550)
T ss_pred CCCccccchHHHHHHHHhhC----CCCcEEEEEcccHHhcc--HHHHHHHHHhCCCEEEEEEECCccccchHHHHHhcCC
Confidence 34689999999999998874 78999999999999864 5679999999999999888776 655433222111
Q ss_pred -------CcC-HHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 016903 217 -------SDG-AVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 269 (380)
Q Consensus 217 -------~~~-~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~ 269 (380)
... |.+.|++||+++.+|+ +++++.+++++|++ .++|+||++.+.+-
T Consensus 479 ~~~~~~~~~~~f~klAea~G~~g~~v~--~~~el~~al~~al~----~~~p~lidv~id~~ 533 (550)
T COG0028 479 RYSGTDLGNPDFVKLAEAYGAKGIRVE--TPEELEEALEEALA----SDGPVLIDVVVDPE 533 (550)
T ss_pred CcceeecCCccHHHHHHHcCCeeEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecCc
Confidence 122 9999999999999999 99999999999987 58999999999765
|
|
| >PRK06725 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.5e-15 Score=155.46 Aligned_cols=115 Identities=20% Similarity=0.268 Sum_probs=93.5
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cccccccc--------
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS-------- 212 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~~-------- 212 (380)
.|+||+++|.|+|+++|. ++++|||++|||+|++. . .+|.+|.+++||+++||.||+ |++.....
T Consensus 421 ~gsmG~~lp~aiGa~lA~----p~~~vv~i~GDG~f~~~-~-~el~Ta~~~~lpi~~vV~NN~~~~~~~~~q~~~~~~~~ 494 (570)
T PRK06725 421 LGTMGFGFPAAIGAQLAK----EEELVICIAGDASFQMN-I-QELQTIAENNIPVKVFIINNKFLGMVRQWQEMFYENRL 494 (570)
T ss_pred cccccchhhHHHhhHhhc----CCCeEEEEEecchhhcc-H-HHHHHHHHhCCCeEEEEEECCccHHHHHHHHHhcCCcc
Confidence 489999999999998884 68899999999999754 3 559999999999888888776 55432110
Q ss_pred --cccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 213 --DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 213 --~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
......|+++++++||+++.+|+ +++++.++++++++ .++|+|||+.+.+
T Consensus 495 ~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~----~~~p~liev~id~ 546 (570)
T PRK06725 495 SESKIGSPDFVKVAEAYGVKGLRAT--NSTEAKQVMLEAFA----HEGPVVVDFCVEE 546 (570)
T ss_pred ccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 11234689999999999999997 89999888888875 5899999999964
|
|
| >cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.6e-15 Score=137.76 Aligned_cols=118 Identities=22% Similarity=0.278 Sum_probs=91.6
Q ss_pred cccCcccccchHHHHHHHHHhhhcCCCCeeEEEeCcccc-CcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccccc---
Q 016903 139 FTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD--- 213 (380)
Q Consensus 139 ~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~-~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~~~--- 213 (380)
+...++||.++|.|+|++++ .++++|||++|||++ +.+ ..+|.+|+++++|+++||.||+ |++...+..
T Consensus 58 ~~~~gsmG~GlpaAiGa~~a----~p~r~VV~i~GDG~~~~m~--~~eL~ta~~~~~pv~~vVlNN~~yg~tg~q~~~~~ 131 (235)
T cd03376 58 FENAAAVASGIEAALKALGR----GKDITVVAFAGDGGTADIG--FQALSGAAERGHDILYICYDNEAYMNTGIQRSGST 131 (235)
T ss_pred hcCHHHHHHHHHHHHHHhcc----CCCCeEEEEEcCchHHhhH--HHHHHHHHHcCCCeEEEEECCcccccCCCCCCCCC
Confidence 33457999999999998655 478899999999995 554 4669999999999999888886 563211110
Q ss_pred ------------------ccCCcCHHHHHhhcCceEEE-EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 214 ------------------QFRSDGAVVKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 214 ------------------~~~~~~~~~~a~a~G~~~~~-VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
.....|+.++|+++|++++. +...++.++.+++++|++ .++|+|||+.+
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~a~~----~~gP~lIev~~ 199 (235)
T cd03376 132 PYGAWTTTTPVGKVSFGKKQPKKDLPLIMAAHNIPYVATASVAYPEDLYKKVKKALS----IEGPAYIHILS 199 (235)
T ss_pred CCCCEeecCCCCccccccccccCCHHHHHHHcCCcEEEEEcCCCHHHHHHHHHHHHh----CCCCEEEEEEC
Confidence 11336899999999999874 555699999999999886 47999999987
|
PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity. |
| >PRK06546 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1e-14 Score=153.62 Aligned_cols=116 Identities=25% Similarity=0.328 Sum_probs=94.7
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccc--------cc
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIST--------PI 211 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~--------~~ 211 (380)
..|+||+++|.|+|+++|. ++++|||++|||+|+++ ..+|.+|++++||+++||.||+ |++.. +.
T Consensus 406 ~~gsmG~~~paAiGa~la~----p~~~vv~i~GDGsf~~~--~~el~Ta~~~~lpv~~vV~NN~~~g~i~~~q~~~~~~~ 479 (578)
T PRK06546 406 RHGSMANALPHAIGAQLAD----PGRQVISMSGDGGLSML--LGELLTVKLYDLPVKVVVFNNSTLGMVKLEMLVDGLPD 479 (578)
T ss_pred CcccccchhHHHHHHHHhC----CCCcEEEEEcCchHhhh--HHHHHHHHHhCCCeEEEEEECCccccHHHHHHhcCCCc
Confidence 3589999999999999984 67899999999999864 3459999999999888877775 56531 10
Q ss_pred c-cccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 212 S-DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 ~-~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
. ......|++++|++||+++.+|+ +++++.++++++++ .++|+|||+.+.+
T Consensus 480 ~~~~~~~~df~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIev~~~~ 531 (578)
T PRK06546 480 FGTDHPPVDYAAIAAALGIHAVRVE--DPKDVRGALREAFA----HPGPALVDVVTDP 531 (578)
T ss_pred ccccCCCCCHHHHHHHCCCeeEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 0 11235689999999999999998 99999999998876 5899999999854
|
|
| >PRK09107 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.4e-15 Score=154.80 Aligned_cols=115 Identities=20% Similarity=0.243 Sum_probs=94.0
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccc---------
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI--------- 211 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~--------- 211 (380)
.|+||+++|.|+|+++|. +++.|||++|||+|++. ..+|.+|++++||+++||.||+ |++....
T Consensus 429 ~gsmG~glpaaiGa~lA~----p~r~Vv~i~GDG~f~m~--~~EL~Ta~r~~lpvi~vV~NN~~y~~i~~~q~~~~~~~~ 502 (595)
T PRK09107 429 LGTMGYGLPAALGVQIAH----PDALVIDIAGDASIQMC--IQEMSTAVQYNLPVKIFILNNQYMGMVRQWQQLLHGNRL 502 (595)
T ss_pred chhhhhhHHHHHHHHHhC----CCCeEEEEEcCchhhcc--HHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHHhCCcc
Confidence 489999999999999884 78899999999999865 3569999999999888777775 6653211
Q ss_pred ccc--cCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 212 SDQ--FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 ~~~--~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
... ....||++.|++||+++.+|+ +++++.+++++|.+ .++|+|||+.+.+
T Consensus 503 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~i~~ 555 (595)
T PRK09107 503 SHSYTEAMPDFVKLAEAYGAVGIRCE--KPGDLDDAIQEMID----VDKPVIFDCRVAN 555 (595)
T ss_pred ccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 111 123689999999999999998 99999999999886 4799999999965
|
|
| >PRK11269 glyoxylate carboligase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.7e-15 Score=155.99 Aligned_cols=120 Identities=22% Similarity=0.230 Sum_probs=96.4
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccccc----c-
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD----Q- 214 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~~~----~- 214 (380)
..|+||+++|.|+|+++|. +++.|||++|||+|++. ..+|.+|.+++||+++||.||+ |++...... .
T Consensus 417 ~~G~mG~glpaAiGa~la~----p~r~Vv~i~GDG~f~m~--~~eL~Ta~~~~lpv~~vV~NN~~~g~i~~~~~~~~~~~ 490 (591)
T PRK11269 417 QAGPLGWTIPAALGVRAAD----PDRNVVALSGDYDFQFL--IEELAVGAQFNLPYIHVLVNNAYLGLIRQAQRAFDMDY 490 (591)
T ss_pred ccccccchhhhHHhhhhhC----CCCcEEEEEccchhhcC--HHHHHHHHHhCCCeEEEEEeCCchhHHHHHHHHhccCc
Confidence 3589999999999999884 67899999999999875 3559999999999888877776 664321100 0
Q ss_pred -----c----------CCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 215 -----F----------RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 215 -----~----------~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
. ...||++.|++||+++.+|. +++++..++++|++.+.+.++|+|||+.+.+
T Consensus 491 ~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~~~~~~gp~lieV~v~~ 557 (591)
T PRK11269 491 CVQLAFENINSPELNGYGVDHVKVAEGLGCKAIRVF--KPEDIAPALEQAKALMAEFRVPVVVEVILER 557 (591)
T ss_pred cceeeccccccccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEecc
Confidence 0 13689999999999999998 9999999999998644446899999999954
|
|
| >PRK05858 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1e-14 Score=152.66 Aligned_cols=115 Identities=22% Similarity=0.153 Sum_probs=93.9
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccccccccc--------
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPIS-------- 212 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~~~~~~~-------- 212 (380)
.|+||+++|.|+|+++|. ++++|||++|||+|++. ..+|.+|.+++||+++||.|| .|++.....
T Consensus 406 ~gsmG~~lp~aiGa~la~----p~r~vv~i~GDG~f~~~--~~eL~Ta~~~~lpi~ivV~NN~~y~~~~~~~~~~~~~~~ 479 (542)
T PRK05858 406 FGCLGTGPGYALAARLAR----PSRQVVLLQGDGAFGFS--LMDVDTLVRHNLPVVSVIGNNGIWGLEKHPMEALYGYDV 479 (542)
T ss_pred ccccccchhHHHHHHHhC----CCCcEEEEEcCchhcCc--HHHHHHHHHcCCCEEEEEEeCCchhhHHHHHHHhcCCcc
Confidence 589999999999998884 78899999999999865 356999999999977777666 466532111
Q ss_pred --cccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 213 --DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 213 --~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
...+..||.+.|++||+++.+|+ +++++.+++++|++ .++|+|||+.|.+
T Consensus 480 ~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIev~~~~ 531 (542)
T PRK05858 480 AADLRPGTRYDEVVRALGGHGELVT--VPAELGPALERAFA----SGVPYLVNVLTDP 531 (542)
T ss_pred ccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCcEEEEEEECC
Confidence 11135799999999999999999 99999999999885 5799999999954
|
|
| >PRK06882 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.9e-14 Score=151.53 Aligned_cols=117 Identities=20% Similarity=0.268 Sum_probs=94.5
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cccccc---------
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTP--------- 210 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~--------- 210 (380)
..|+||+++|.|+|+++|. ++++|||++|||+|++. .++|.+|.+++||+++||.||+ |++...
T Consensus 419 ~~g~mG~~lp~aiGa~la~----p~~~vv~i~GDG~f~~~--~~eL~ta~~~~lpv~~vV~NN~~~~~i~~~q~~~~~~~ 492 (574)
T PRK06882 419 GAGTMGFGLPAAIGVKFAH----PEATVVCVTGDGSIQMN--IQELSTAKQYDIPVVIVSLNNRFLGMVKQWQDLIYSGR 492 (574)
T ss_pred CcccccchhHHHHHHHhhc----CCCcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEECchhHHHHHHHHHhcCCc
Confidence 3588999999999999884 67899999999999875 3779999999999888887776 543211
Q ss_pred cccc--cCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 211 ISDQ--FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 211 ~~~~--~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
.... ....++.++|++||+++++|+ +.+++..+++++++. .++|+|||+.+.+
T Consensus 493 ~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~eL~~al~~a~~~---~~~p~liev~i~~ 547 (574)
T PRK06882 493 HSQVYMNSLPDFAKLAEAYGHVGIQID--TPDELEEKLTQAFSI---KDKLVFVDVNVDE 547 (574)
T ss_pred ccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhc---CCCcEEEEEEecC
Confidence 0111 124689999999999999998 899999999988863 3689999999965
|
|
| >TIGR02418 acolac_catab acetolactate synthase, catabolic | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.8e-14 Score=150.58 Aligned_cols=117 Identities=21% Similarity=0.305 Sum_probs=94.2
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Cccccccccc------
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPISD------ 213 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~~~~~~~~------ 213 (380)
..|+||+++|.|+|+++|. ++++|||++|||+|++. ..+|.+|.+++||+++||.|| +|++......
T Consensus 406 ~~g~mG~~lpaaiGa~la~----~~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpi~ivV~NN~~y~~~~~~~~~~~~~~ 479 (539)
T TIGR02418 406 GMQTLGVALPWAIGAALVR----PNTKVVSVSGDGGFLFS--SMELETAVRLKLNIVHIIWNDNGYNMVEFQEEMKYQRS 479 (539)
T ss_pred CccccccHHHHHHHHHHhC----CCCcEEEEEcchhhhch--HHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCc
Confidence 3579999999999999884 67899999999999864 356999999999977766655 5765321110
Q ss_pred ---ccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 016903 214 ---QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 269 (380)
Q Consensus 214 ---~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~ 269 (380)
.....|+.+.|++||+++.+|+ ++.++.+++++|++ .++|+|||+.+.+.
T Consensus 480 ~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~----~~~p~lIev~v~~~ 532 (539)
T TIGR02418 480 SGVDFGPIDFVKYAESFGAKGLRVE--SPDQLEPTLRQAME----VEGPVVVDIPVDYS 532 (539)
T ss_pred ccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecCc
Confidence 1234689999999999999999 99999999998875 47999999999653
|
Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family. |
| >PRK07064 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.5e-14 Score=151.27 Aligned_cols=114 Identities=22% Similarity=0.295 Sum_probs=92.7
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccccccccc--------
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPIS-------- 212 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~~~~~~~-------- 212 (380)
.|+||+++|.|+|+++|. +++.|||++|||+|++. ..+|.+|.+++||+++||.|| +|++.....
T Consensus 404 ~g~mG~~lpaAiGa~lA~----p~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~yg~~~~~~~~~~~~~~ 477 (544)
T PRK07064 404 GGGIGQGLAMAIGAALAG----PGRKTVGLVGDGGLMLN--LGELATAVQENANMVIVLMNDGGYGVIRNIQDAQYGGRR 477 (544)
T ss_pred CCccccccchhhhhhhhC----cCCcEEEEEcchHhhhh--HHHHHHHHHhCCCeEEEEEeCChhHHHHHHHHHhcCCcc
Confidence 478999999999999884 68899999999999864 366999999999977766655 476542111
Q ss_pred --cccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016903 213 --DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 213 --~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~ 267 (380)
......|+.+.|++||+++.+|+ +++++.++++++++ .++|+|||+.++
T Consensus 478 ~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIeV~~~ 528 (544)
T PRK07064 478 YYVELHTPDFALLAASLGLPHWRVT--SADDFEAVLREALA----KEGPVLVEVDML 528 (544)
T ss_pred ccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHc----CCCCEEEEEEcc
Confidence 11234689999999999999998 89999999998875 479999999986
|
|
| >PRK07979 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=2e-14 Score=151.43 Aligned_cols=118 Identities=23% Similarity=0.261 Sum_probs=95.2
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccc---------
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI--------- 211 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~--------- 211 (380)
.|+||+++|.|+|+++|. +++.|||++|||+|++. ..+|.+|.+++||+++||.||+ |++....
T Consensus 420 ~g~mG~glpaaiGa~la~----p~~~vv~i~GDG~f~m~--~~eL~Ta~r~~l~v~ivV~NN~~yg~i~~~q~~~~~~~~ 493 (574)
T PRK07979 420 LGTMGFGLPAALGVKMAL----PEETVVCVTGDGSIQMN--IQELSTALQYELPVLVLNLNNRYLGMVKQWQDMIYSGRH 493 (574)
T ss_pred ccchhhHHHHHHHHHHhC----CCCeEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCchhhHHHHHHHHhcCCcc
Confidence 489999999999999884 67899999999999864 4679999999999888777665 6543211
Q ss_pred ccc--cCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 212 SDQ--FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 ~~~--~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
... ....||++.|++||+++.+|+ +++++..++++|++.++ .++|+|||+.+.+
T Consensus 494 ~~~~~~~~~d~~~iA~a~G~~g~~v~--~~~eL~~al~~a~~~~~-~~~p~lIeV~i~~ 549 (574)
T PRK07979 494 SQSYMQSLPDFVRLAEAYGHVGIQIS--HPDELESKLSEALEQVR-NNRLVFVDVTVDG 549 (574)
T ss_pred ccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhccC-CCCcEEEEEEECC
Confidence 111 124689999999999999998 99999999999987443 3689999999964
|
|
| >TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.7e-14 Score=140.01 Aligned_cols=118 Identities=20% Similarity=0.148 Sum_probs=93.7
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCC-CEEEEEEcCC-cccccccccccCCc
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNG-WAISTPISDQFRSD 218 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~-~~~~~~~~~~~~~~ 218 (380)
..|+||+++|.|+|+|+|. ++++|||+.|||+|.+. ..+|.+++++++ |+++||.||+ |+............
T Consensus 219 ~~GsMG~a~p~AlG~ala~----p~r~Vv~i~GDGsflm~--~~eL~t~~~~~~~nli~VVlNNg~~~~~g~q~~~~~~~ 292 (361)
T TIGR03297 219 TVGSMGHASQIALGLALAR----PDQRVVCLDGDGAALMH--MGGLATIGTQGPANLIHVLFNNGAHDSVGGQPTVSQHL 292 (361)
T ss_pred eechhhhHHHHHHHHHHHC----CCCCEEEEEChHHHHHH--HHHHHHHHHhCCCCeEEEEEcCccccccCCcCCCCCCC
Confidence 3599999999999999884 67899999999999753 456999999997 8888777776 55433222222357
Q ss_pred CHHHHHhhcCc-eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCC
Q 016903 219 GAVVKGRAYGV-RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 270 (380)
Q Consensus 219 ~~~~~a~a~G~-~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~ 270 (380)
|+.+.|++||+ .+++|+ +.+++.++++++.+ .++|+|||+++.+..
T Consensus 293 d~~~iA~a~G~~~~~~v~--~~~eL~~al~~a~~----~~gp~lIeV~v~~g~ 339 (361)
T TIGR03297 293 DFAQIAKACGYAKVYEVS--TLEELETALTAASS----ANGPRLIEVKVRPGS 339 (361)
T ss_pred CHHHHHHHCCCceEEEeC--CHHHHHHHHHHHHh----CCCcEEEEEEecCCC
Confidence 89999999997 577776 99999999998864 479999999986544
|
This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A |
| >PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-14 Score=153.91 Aligned_cols=116 Identities=22% Similarity=0.246 Sum_probs=94.0
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccccc------
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD------ 213 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~~~------ 213 (380)
..|+||.++|.|+|+++|. +++.|||++|||+|++. ..+|.+|++++||+++||.||+ |++......
T Consensus 432 ~~g~mG~glpaAiGA~lA~----p~r~Vv~i~GDG~f~m~--~~eL~Ta~r~~lpvi~vV~NN~~~g~i~~~q~~~~~~~ 505 (616)
T PRK07418 432 GLGTMGFGMPAAMGVKVAL----PDEEVICIAGDASFLMN--IQELGTLAQYGINVKTVIINNGWQGMVRQWQESFYGER 505 (616)
T ss_pred CccccccHHHHHHHHHHhC----CCCcEEEEEcchHhhhh--HHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCC
Confidence 3589999999999998884 78899999999999864 4569999999999888777775 554321110
Q ss_pred ----cc--CCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 214 ----QF--RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 214 ----~~--~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
.. ...||++.|++||+++++|+ +++++.+++++|++ .++|+|||+.+.+
T Consensus 506 ~~~~~~~~~~~d~~~~A~a~G~~g~~V~--~~~el~~al~~a~~----~~~p~lIeV~i~~ 560 (616)
T PRK07418 506 YSASNMEPGMPDFVKLAEAFGVKGMVIS--ERDQLKDAIAEALA----HDGPVLIDVHVRR 560 (616)
T ss_pred ceeecCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 01 24689999999999999998 99999999988875 4789999999854
|
|
| >PRK09124 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.3e-14 Score=150.87 Aligned_cols=116 Identities=23% Similarity=0.280 Sum_probs=93.4
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Cccccccc--------
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI-------- 211 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~~~~~~-------- 211 (380)
..|+||+++|.|+|+++|. ++++|||++|||+|++. ..+|.+|.+++||+++||.|| +|++....
T Consensus 406 ~~G~mG~~lpaAiGa~la~----p~r~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~i~~~~~~~~~~~ 479 (574)
T PRK09124 406 NHGSMANAMPQALGAQAAH----PGRQVVALSGDGGFSML--MGDFLSLVQLKLPVKIVVFNNSVLGFVAMEMKAGGYLT 479 (574)
T ss_pred CcccccchHHHHHHHHHhC----CCCeEEEEecCcHHhcc--HHHHHHHHHhCCCeEEEEEeCCccccHHHHHHhcCCcc
Confidence 4589999999999999884 68899999999999864 355999999999977766655 47653110
Q ss_pred -ccccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 212 -SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 -~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
.......|+++.|++||+++.+|+ +++++.+++++|++ .++|+|||+.+.+
T Consensus 480 ~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIev~i~~ 531 (574)
T PRK09124 480 DGTDLHNPDFAAIAEACGITGIRVE--KASELDGALQRAFA----HDGPALVDVVTAK 531 (574)
T ss_pred ccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 011234689999999999999998 99999999998875 4799999999864
|
|
| >PRK07525 sulfoacetaldehyde acetyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-14 Score=153.71 Aligned_cols=121 Identities=19% Similarity=0.226 Sum_probs=95.7
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Cccccccccc------
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPISD------ 213 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~~~~~~~~------ 213 (380)
..|+||+++|.|+|+++|. ++++|||++|||+|+++ . .+|.+|.+++||+++||.|| +|++......
T Consensus 433 ~~g~mG~glp~aiGa~la~----p~r~vv~i~GDG~f~~~-~-~el~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~~~ 506 (588)
T PRK07525 433 SFGNCGYAFPAIIGAKIAC----PDRPVVGFAGDGAWGIS-M-NEVMTAVRHNWPVTAVVFRNYQWGAEKKNQVDFYNNR 506 (588)
T ss_pred cccccccHHHHHHHHHHhC----CCCcEEEEEcCchHhcc-H-HHHHHHHHhCCCeEEEEEeCchhHHHHHHHHHHhCCC
Confidence 3589999999999999884 67899999999999876 3 45899999999987777555 6765321100
Q ss_pred ----cc-CCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCC
Q 016903 214 ----QF-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 270 (380)
Q Consensus 214 ----~~-~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~ 270 (380)
.. ...|+.++|++||+++++|+ +++++.++++++++.. +.++|+|||+.+.+-.
T Consensus 507 ~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~-~~~~p~lIev~~~~~~ 565 (588)
T PRK07525 507 FVGTELDNNVSYAGIAEAMGAEGVVVD--TQEELGPALKRAIDAQ-NEGKTTVIEIMCNQEL 565 (588)
T ss_pred cccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhcC-CCCCcEEEEEEecccc
Confidence 11 23689999999999999998 9999999999998743 2358999999996544
|
|
| >PRK08199 thiamine pyrophosphate protein; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.5e-14 Score=150.17 Aligned_cols=116 Identities=24% Similarity=0.295 Sum_probs=93.8
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccc-c------
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI-S------ 212 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~-~------ 212 (380)
..|+||+++|.|+|++++ .++++|||++|||+|++. .++|.+|++++||+++||.||+ |++.... .
T Consensus 413 ~~g~mG~glpaaiGa~la----~p~~~vv~i~GDGsf~~~--~~el~ta~~~~l~i~~vv~nN~~~~~~~~~~~~~~~~~ 486 (557)
T PRK08199 413 TSGSMGYGLPAAIAAKLL----FPERTVVAFAGDGCFLMN--GQELATAVQYGLPIIVIVVNNGMYGTIRMHQEREYPGR 486 (557)
T ss_pred CCccccchHHHHHHHHHh----CCCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCc
Confidence 358999999999998887 468899999999999854 4779999999999999888777 6643211 0
Q ss_pred ---cccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 213 ---DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 213 ---~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
......|+++.+++||+++.+|+ +++++.++++++++ .++|+|||+.+.+
T Consensus 487 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~li~v~~~~ 539 (557)
T PRK08199 487 VSGTDLTNPDFAALARAYGGHGETVE--RTEDFAPAFERALA----SGKPALIEIRIDP 539 (557)
T ss_pred cccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCH
Confidence 11123689999999999999999 88898888888764 5899999999954
|
|
| >PRK06457 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.4e-14 Score=150.01 Aligned_cols=116 Identities=16% Similarity=0.264 Sum_probs=93.2
Q ss_pred cCcccccchHHHHHHHHHhhhcCC-CCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Cccccccc-------
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRK-DACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI------- 211 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~-~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~~~~~~------- 211 (380)
..|+||+++|.|+|+++|. + +++|||++|||+|++. ..+|.+|.+++||+++||.|| +|++....
T Consensus 394 ~~g~mG~glpaaiGa~la~----p~~~~Vv~i~GDGsf~~~--~~eL~Ta~~~~lpi~ivV~NN~~~g~i~~~q~~~~~~ 467 (549)
T PRK06457 394 WLGSMGIGVPGSVGASFAV----ENKRQVISFVGDGGFTMT--MMELITAKKYDLPVKIIIYNNSKLGMIKFEQEVMGYP 467 (549)
T ss_pred CcchhhhhHHHHHHHHhcC----CCCCeEEEEEcccHHhhh--HHHHHHHHHHCCCeEEEEEECCccchHHHHHHHhcCC
Confidence 3699999999999999874 4 7899999999999864 466999999999977766555 57653210
Q ss_pred --ccccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 212 --SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 --~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
.......|+.+.|++||+++.+|+ ++.++..+++++++ .++|+|||+.+.+
T Consensus 468 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~i~~ 520 (549)
T PRK06457 468 EWGVDLYNPDFTKIAESIGFKGFRLE--EPKEAEEIIEEFLN----TKGPAVLDAIVDP 520 (549)
T ss_pred cccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCc
Confidence 011124689999999999999998 99999999998875 4799999999954
|
|
| >PRK07586 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.5e-14 Score=150.25 Aligned_cols=113 Identities=31% Similarity=0.260 Sum_probs=90.5
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Cccccccc-----c---
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI-----S--- 212 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~~~~~~-----~--- 212 (380)
.|+||+++|.|+|+++|. ++++|||++|||+|++. ..+|.+|.+++||+++||.|| +|++.... .
T Consensus 384 ~g~mG~~lpaaiGa~lA~----p~r~Vv~i~GDGsf~m~--~~EL~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~~~~ 457 (514)
T PRK07586 384 GGAIGQGLPLATGAAVAC----PDRKVLALQGDGSAMYT--IQALWTQARENLDVTTVIFANRAYAILRGELARVGAGNP 457 (514)
T ss_pred CcccccHHHHHHHHHHhC----CCCeEEEEEechHHHhH--HHHHHHHHHcCCCCEEEEEeCchhHHHHHHHHHhcCCCC
Confidence 489999999999999884 68899999999999864 467999999999976666555 57753210 0
Q ss_pred --------c-ccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 213 --------D-QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 213 --------~-~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
. ..+..|+.+.|++||+++.+|+ ++.++.+++++|++ .++|+|||+.+
T Consensus 458 ~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~el~~al~~a~~----~~~p~liev~~ 514 (514)
T PRK07586 458 GPRALDMLDLDDPDLDWVALAEGMGVPARRVT--TAEEFADALAAALA----EPGPHLIEAVV 514 (514)
T ss_pred CccccccccCCCCCCCHHHHHHHCCCcEEEeC--CHHHHHHHHHHHHc----CCCCEEEEEEC
Confidence 0 0123689999999999999998 89999998888875 47999999864
|
|
| >PLN02573 pyruvate decarboxylase | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.2e-14 Score=151.12 Aligned_cols=116 Identities=17% Similarity=0.153 Sum_probs=93.0
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccccccccc----cccC
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPIS----DQFR 216 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~~~~~~~----~~~~ 216 (380)
.|+||+++|.|+|+++|. ++++|||++|||+|++. ..+|.+|++++||+++||.|| +|++..... ....
T Consensus 427 ~gsmG~glpaaiGa~lA~----p~r~vv~i~GDG~f~m~--~~EL~Ta~r~~lpvv~vV~NN~~yg~~~~~~~~~~~~~~ 500 (578)
T PLN02573 427 YGSIGWSVGATLGYAQAA----PDKRVIACIGDGSFQVT--AQDVSTMIRCGQKSIIFLINNGGYTIEVEIHDGPYNVIK 500 (578)
T ss_pred hhhhhhhhhHHHHHHHhC----CCCceEEEEeccHHHhH--HHHHHHHHHcCCCCEEEEEeCCceeEEEeecccCccccC
Confidence 589999999999999885 67899999999999864 466999999999977766655 477543211 1123
Q ss_pred CcCHHHHHhhcC-----ceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016903 217 SDGAVVKGRAYG-----VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 217 ~~~~~~~a~a~G-----~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~ 267 (380)
..|+.++|++|| +++.+|+ +++++.+++++|++. ..++|+|||+.+.
T Consensus 501 ~~d~~~lA~a~G~~~g~~~~~~V~--~~~eL~~al~~a~~~--~~~~p~lieV~v~ 552 (578)
T PLN02573 501 NWNYTGLVDAIHNGEGKCWTAKVR--TEEELIEAIATATGE--KKDCLCFIEVIVH 552 (578)
T ss_pred CCCHHHHHHHhcCcCCceeEEEec--CHHHHHHHHHHHHhh--CCCCcEEEEEEcC
Confidence 468999999995 8999999 899999999998742 2478999999883
|
|
| >PRK06112 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.9e-14 Score=150.30 Aligned_cols=115 Identities=29% Similarity=0.391 Sum_probs=92.8
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cccccccc--------
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS-------- 212 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~~-------- 212 (380)
.|+||+++|.|+|+++| .++++|||++|||+|++ ..++|++|+++++|+++||.||+ |++....+
T Consensus 436 ~gsmG~~l~~aiGa~la----~~~~~vv~i~GDGsf~~--~~~el~ta~~~~l~~~~vv~NN~~~g~~~~~~~~~~~~~~ 509 (578)
T PRK06112 436 LAGLGWGVPMAIGAKVA----RPGAPVICLVGDGGFAH--VWAELETARRMGVPVTIVVLNNGILGFQKHAETVKFGTHT 509 (578)
T ss_pred ccccccHHHHHHHHHhh----CCCCcEEEEEcchHHHh--HHHHHHHHHHhCCCeEEEEEeCCccCCEEeccccccCCcc
Confidence 47899999999999887 46789999999999974 56889999999999888888886 34322110
Q ss_pred --cccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 213 --DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 213 --~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
......++.++|++||+++++|+ +++++.++++++++ .+||+|||+++.+
T Consensus 510 ~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIev~~~~ 561 (578)
T PRK06112 510 DACHFAAVDHAAIARACGCDGVRVE--DPAELAQALAAAMA----APGPTLIEVITDP 561 (578)
T ss_pred ccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEcCc
Confidence 01124689999999999999998 88999888888875 5899999999854
|
|
| >cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.8e-14 Score=135.45 Aligned_cols=119 Identities=20% Similarity=0.198 Sum_probs=90.0
Q ss_pred cCcccccchHHHHHHHHHh-hhcCCCCeeEEEeCccccC-cchHHHHHHHHHHcCCCEEEEEEcCC-ccccccccc----
Q 016903 141 VSSTIATQLPHAVGAAYAL-KMDRKDACAVTYFGDGGTS-EGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD---- 213 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~-k~~~~~~~vv~~~GDG~~~-eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~~~---- 213 (380)
..|+||+++|.|+|+++|. +...++++|||+.|||++. .| +.+ +.++.++++|+++||.||+ |++...+..
T Consensus 62 ~~g~mG~GlpaAiGA~~a~~~~~~p~~~Vv~i~GDG~~~~~g-~~~-l~ta~~~~l~i~ivVlNN~~yg~~~~q~~~~~~ 139 (237)
T cd02018 62 DANAVASGLKRGLKARFPKDRELDKKKDVVVIGGDGATYDIG-FGA-LSHSLFRGEDITVIVLDNEVYSNTGGQRSGATP 139 (237)
T ss_pred CHHHHHHHHHHHHHhhcccccccCCCCcEEEEeCchHHHhcc-HHH-HHHHHHcCCCeEEEEECCccccCCCCCCCCCCc
Confidence 3489999999999998771 1113678999999999984 44 333 6778889999888887776 554321110
Q ss_pred ------------ccCCcCHHHHHhhcCceEEE---EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 214 ------------QFRSDGAVVKGRAYGVRSIR---VDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 214 ------------~~~~~~~~~~a~a~G~~~~~---VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
.....|+++.|++||+++++ |+ ++.++.+++++|++ +.+||+||++.+
T Consensus 140 ~g~~~~~~~~~~~~~~~D~~~iA~a~G~~~~~~~~v~--~~~~l~~al~~al~---~~~GP~lI~v~i 202 (237)
T cd02018 140 LGADSKMAPAGKKEDKKDLVLIAATHGCVYVARLSPA--LKKHFLKVVKEAIS---RTDGPTFIHAYT 202 (237)
T ss_pred CCCcccccCCCCcCCCCCHHHHHHHCCCCEEEEEccC--CHHHHHHHHHHHHh---cCCCCEEEEEeC
Confidence 12346899999999999986 66 89999999998885 148999999986
|
Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors. |
| >PRK06456 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.1e-14 Score=151.11 Aligned_cols=116 Identities=24% Similarity=0.277 Sum_probs=94.2
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccccc------
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD------ 213 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~~~------ 213 (380)
..|+||+++|.|+|+++|. ++++|||++|||+|++.. .+|.+|.+++||+++||.||+ |++....+.
T Consensus 419 ~~g~mG~glpaAiGa~la~----p~~~vv~i~GDG~f~m~~--~eL~Ta~~~~l~i~ivV~NN~~yg~i~~~q~~~~~~~ 492 (572)
T PRK06456 419 GMGTMGFGLPAAMGAKLAR----PDKVVVDLDGDGSFLMTG--TNLATAVDEHIPVISVIFDNRTLGLVRQVQDLFFGKR 492 (572)
T ss_pred CcccccchhHHHHHHHHhC----CCCeEEEEEccchHhcch--HHHHHHHHhCCCeEEEEEECCchHHHHHHHHHhhCCC
Confidence 3589999999999999884 678999999999998653 569999999999777776665 765431110
Q ss_pred ----cc-CCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 214 ----QF-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 214 ----~~-~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
.. ...|+++.|++||+++.+|. +++++.+++++|.+ .++|+|||+.+.+
T Consensus 493 ~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIev~v~~ 546 (572)
T PRK06456 493 IVGVDYGPSPDFVKLAEAFGALGFNVT--TYEDIEKSLKSAIK----EDIPAVIRVPVDK 546 (572)
T ss_pred cccccCCCCCCHHHHHHHCCCeeEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCc
Confidence 11 24689999999999999998 99999999988875 4799999999965
|
|
| >PRK06965 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.5e-14 Score=149.94 Aligned_cols=116 Identities=22% Similarity=0.277 Sum_probs=93.8
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccc---------
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI--------- 211 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~--------- 211 (380)
.|+||+++|.|+|+++|. +++.|||++|||+|++. ..+|.+|.+++||+++||.||+ |++....
T Consensus 436 ~gsmG~glpaaiGa~lA~----p~r~Vv~i~GDGsf~m~--~~eL~Ta~r~~lpviivV~NN~~~~~i~~~q~~~~~~~~ 509 (587)
T PRK06965 436 LGTMGVGLPYAMGIKMAH----PDDDVVCITGEGSIQMC--IQELSTCLQYDTPVKIISLNNRYLGMVRQWQEIEYSKRY 509 (587)
T ss_pred cccccchHHHHHHHHHhC----CCCcEEEEEcchhhhcC--HHHHHHHHHcCCCeEEEEEECCcchHHHHHHHHhcCCCc
Confidence 489999999999999884 68899999999999865 3669999999999888777665 5543211
Q ss_pred ccc-c-CCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 212 SDQ-F-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 ~~~-~-~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
... . ..+|+++.|++||+++.+|+ +..++.+++++|+++ .++|+|||+.+.+
T Consensus 510 ~~~~~~~~~d~~~iA~a~G~~~~~v~--~~~eL~~al~~a~~~---~~~p~lieV~i~~ 563 (587)
T PRK06965 510 SHSYMDALPDFVKLAEAYGHVGMRIE--KTSDVEPALREALRL---KDRTVFLDFQTDP 563 (587)
T ss_pred cccCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhc---CCCcEEEEEEecc
Confidence 011 1 24689999999999999998 999999999998863 3689999999954
|
|
| >PRK07710 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.4e-14 Score=148.71 Aligned_cols=115 Identities=27% Similarity=0.361 Sum_probs=92.3
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccc---------
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI--------- 211 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~--------- 211 (380)
.|+||+++|.|+|+++|. ++++||+++|||+|++. +. +|++|.++++|+++||.||+ |++....
T Consensus 423 ~g~mG~glpaAiGaala~----p~~~vv~i~GDGsf~m~-~~-eL~ta~r~~lpi~ivV~NN~~~~~i~~~~~~~~~~~~ 496 (571)
T PRK07710 423 LGTMGFGLPAAIGAQLAK----PDETVVAIVGDGGFQMT-LQ-ELSVIKELSLPVKVVILNNEALGMVRQWQEEFYNQRY 496 (571)
T ss_pred cccccchHHHHHHHHHhC----CCCcEEEEEcchHHhhh-HH-HHHHHHHhCCCeEEEEEECchHHHHHHHHHHHhCCcc
Confidence 489999999999999884 68899999999999864 34 49999999999777666554 6653211
Q ss_pred c--cccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 212 S--DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 ~--~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
. ......++++.|++||+++.+|+ +.+++..++++|++ .++|+|||+.+.+
T Consensus 497 ~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lieV~vd~ 549 (571)
T PRK07710 497 SHSLLSCQPDFVKLAEAYGIKGVRID--DELEAKEQLQHAIE----LQEPVVIDCRVLQ 549 (571)
T ss_pred eeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 0 11134689999999999999998 78888888888775 5799999999965
|
|
| >CHL00099 ilvB acetohydroxyacid synthase large subunit | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.9e-14 Score=150.53 Aligned_cols=116 Identities=22% Similarity=0.279 Sum_probs=93.4
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccc--------
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI-------- 211 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~-------- 211 (380)
..|+||+++|.|+|+++|. ++++|||++|||+|++. ..+|.+|++++||+++||.||+ |++....
T Consensus 428 ~~g~mG~glpaaiGaala~----p~~~vv~i~GDG~f~m~--~~eL~Ta~~~~l~~~~vV~NN~~y~~i~~~q~~~~~~~ 501 (585)
T CHL00099 428 GLGTMGYGLPAAIGAQIAH----PNELVICISGDASFQMN--LQELGTIAQYNLPIKIIIINNKWQGMVRQWQQAFYGER 501 (585)
T ss_pred cccchhhhHHHHHHHHHhC----CCCeEEEEEcchhhhhh--HHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCC
Confidence 3589999999999999884 57899999999999864 4669999999999888887776 4432110
Q ss_pred -cc---ccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 212 -SD---QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 -~~---~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
.. .....|+.+++++||+++.+|+ +++++.+++++|++ .++|+|||+.+.+
T Consensus 502 ~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~v~~ 556 (585)
T CHL00099 502 YSHSNMEEGAPDFVKLAEAYGIKGLRIK--SRKDLKSSLKEALD----YDGPVLIDCQVIE 556 (585)
T ss_pred cccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEECC
Confidence 00 1123689999999999999998 89999888888875 5799999999953
|
|
| >PLN02470 acetolactate synthase | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.8e-14 Score=150.59 Aligned_cols=115 Identities=21% Similarity=0.228 Sum_probs=92.7
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccc---------
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI--------- 211 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~--------- 211 (380)
.|+||+++|.|+|+++|. +++.|||++|||+|++. ..+|.+|.+++||+++||.||+ |++....
T Consensus 425 ~g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~--~~eL~Ta~~~~l~v~ivV~NN~~yg~i~~~~~~~~~~~~ 498 (585)
T PLN02470 425 LGAMGFGLPAAIGAAAAN----PDAIVVDIDGDGSFIMN--IQELATIHVENLPVKIMVLNNQHLGMVVQWEDRFYKANR 498 (585)
T ss_pred cccccchHHHHHHHHHhC----CCCcEEEEEccchhhcc--HHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHHhCCce
Confidence 589999999999999884 68899999999999875 3669999999999777666664 6543210
Q ss_pred ccc-cC--------CcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 212 SDQ-FR--------SDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 ~~~-~~--------~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
... .. ..|+.+.|++||+++.+|+ ++.++.++++++++ .++|+|||+.+.+
T Consensus 499 ~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lieV~i~~ 558 (585)
T PLN02470 499 AHTYLGDPDAEAEIFPDFLKFAEGCKIPAARVT--RKSDLREAIQKMLD----TPGPYLLDVIVPH 558 (585)
T ss_pred eeeecCccccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 000 00 2589999999999999998 89999999999876 4799999999964
|
|
| >PRK08979 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.2e-14 Score=148.87 Aligned_cols=116 Identities=24% Similarity=0.311 Sum_probs=93.3
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccc---------
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI--------- 211 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~--------- 211 (380)
.|+||+++|.|+|+++|. +++.|||++|||+|++. ..+|.+|.+++||+++||.||+ |++....
T Consensus 420 ~g~mG~glpaaiGa~la~----p~~~vv~i~GDG~f~m~--~~EL~Ta~r~~lpv~~vV~NN~~y~~i~~~q~~~~~~~~ 493 (572)
T PRK08979 420 LGTMGFGLPAAMGVKFAM----PDETVVCVTGDGSIQMN--IQELSTALQYDIPVKIINLNNRFLGMVKQWQDMIYQGRH 493 (572)
T ss_pred cccccchhhHHHhhhhhC----CCCeEEEEEcchHhhcc--HHHHHHHHHcCCCeEEEEEeCCccHHHHHHHHHHhCCcc
Confidence 479999999999999884 68899999999999865 3669999999999777776665 6543211
Q ss_pred ccc-c-CCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 212 SDQ-F-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 ~~~-~-~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
... . ...||++.|++||+++.+|+ ++.++..+++++++. .++|+|||+.+.+
T Consensus 494 ~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~eL~~al~~a~~~---~~~p~lIev~i~~ 547 (572)
T PRK08979 494 SHSYMDSVPDFAKIAEAYGHVGIRIS--DPDELESGLEKALAM---KDRLVFVDINVDE 547 (572)
T ss_pred cccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhc---CCCcEEEEEEeCC
Confidence 011 1 24689999999999999999 999999999988752 3789999999964
|
|
| >TIGR02720 pyruv_oxi_spxB pyruvate oxidase | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.4e-14 Score=148.79 Aligned_cols=117 Identities=21% Similarity=0.252 Sum_probs=93.4
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEE-cCCccccccc----c----
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICR-NNGWAISTPI----S---- 212 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~-NN~~~~~~~~----~---- 212 (380)
.|+||+++|.|+|+++|. ++++||+++|||+|++. ..+|.+|++++||+++||. ||+|++.... .
T Consensus 407 ~gsmG~glpaAiGa~la~----p~r~Vv~i~GDGsf~m~--~~eL~Tavr~~lpi~~VV~NN~~yg~i~~~~~~~~~~~~ 480 (575)
T TIGR02720 407 FATMGVGVPGAIAAKLNY----PDRQVFNLAGDGAFSMT--MQDLLTQVQYHLPVINIVFSNCTYGFIKDEQEDTNQPLI 480 (575)
T ss_pred cchhhchHHHHHHHHHhC----CCCcEEEEEcccHHHhh--HHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHhCCCcc
Confidence 589999999999988874 68899999999999864 4669999999999777655 5558753211 0
Q ss_pred -cccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 213 -DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 213 -~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
......|++++|++||+++.+|+ +..++.++++++++ + +.++|+|||+.+..
T Consensus 481 ~~~~~~~df~~iA~a~G~~~~~v~--~~~el~~al~~a~~-~-~~~~p~liev~i~~ 533 (575)
T TIGR02720 481 GVDFNDADFAKIAEGVGAVGFRVN--KIEQLPAVFEQAKA-I-KQGKPVLIDAKITG 533 (575)
T ss_pred cccCCCCCHHHHHHHCCCEEEEeC--CHHHHHHHHHHHHh-h-CCCCcEEEEEEeCC
Confidence 11234689999999999999998 88999999999874 2 35799999999854
|
Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name. |
| >TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.7e-14 Score=149.36 Aligned_cols=114 Identities=20% Similarity=0.220 Sum_probs=91.5
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEc-CCcccccccc------cc
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRN-NGWAISTPIS------DQ 214 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~N-N~~~~~~~~~------~~ 214 (380)
.|+||+++|.|+|+++|. ++++|||++|||+|++. ..+|.+|++++||+++||.| ++|++..... ..
T Consensus 403 ~g~mG~glpaaiGa~la~----p~~~vv~i~GDG~f~m~--~~EL~Ta~~~~lpi~~vV~NN~~y~~i~~~~~~~~~~~~ 476 (539)
T TIGR03393 403 WGSIGYTLPAAFGAQTAC----PNRRVILLIGDGSAQLT--IQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRYND 476 (539)
T ss_pred hhhhhhHHHHHHHHHhcC----CCCCeEEEEcCcHHHhH--HHHHHHHHHcCCCCEEEEEeCCceEEEEeecCCCCCcCc
Confidence 589999999999998874 78899999999999864 46799999999996666654 5576542111 12
Q ss_pred cCCcCHHHHHhhcCce----EEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016903 215 FRSDGAVVKGRAYGVR----SIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 215 ~~~~~~~~~a~a~G~~----~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~ 267 (380)
....|+++.+++||++ +.+|+ +..++.++++++++ .++|+|||+.+.
T Consensus 477 ~~~~df~~la~a~G~~~~~~~~~v~--~~~el~~al~~a~~----~~~p~liev~i~ 527 (539)
T TIGR03393 477 IALWNWTHLPQALSLDPQSECWRVS--EAEQLADVLEKVAA----HERLSLIEVVLP 527 (539)
T ss_pred CCCCCHHHHHHHcCCCCccceEEec--cHHHHHHHHHHHhc----cCCeEEEEEEcC
Confidence 2346899999999996 89998 89999999988875 489999999983
|
A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria. |
| >PRK08273 thiamine pyrophosphate protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.9e-14 Score=149.10 Aligned_cols=116 Identities=24% Similarity=0.267 Sum_probs=93.3
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHc-----CCCEEEEEEcCC-ccccccc----
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT-----EAPVIFICRNNG-WAISTPI---- 211 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~-----~Lpvi~vv~NN~-~~~~~~~---- 211 (380)
.|+||+++|.|+|+++|. ++++|||++|||+|++... .+|.+|+++ +||+++||.||+ |++....
T Consensus 414 ~g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~~~-~EL~Ta~r~~~~~~~lpviivV~NN~~~~~i~~~q~~~ 488 (597)
T PRK08273 414 LATMGPAVPYAIAAKFAH----PDRPVIALVGDGAMQMNGM-AELITVAKYWRQWSDPRLIVLVLNNRDLNQVTWEQRVM 488 (597)
T ss_pred cccccchHHHHHHHHHhC----CCCcEEEEEcchhHhccch-HHHHHHHHHhhcccCCCEEEEEEeCCcchHHHHHHHHh
Confidence 489999999999999884 6889999999999976422 559999999 899888777775 6543211
Q ss_pred -----c---cccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 212 -----S---DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 -----~---~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
. ...+..|+++.|++||+++.+|. +++++..++++|++ .++|+|||+.+.+
T Consensus 489 ~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIeV~~~~ 547 (597)
T PRK08273 489 EGDPKFEASQDLPDVPYARFAELLGLKGIRVD--DPEQLGAAWDEALA----ADRPVVLEVKTDP 547 (597)
T ss_pred cCCCcccccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 0 01134679999999999999999 89999999999875 4899999999955
|
|
| >PRK08617 acetolactate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.1e-14 Score=149.29 Aligned_cols=115 Identities=19% Similarity=0.265 Sum_probs=92.7
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Cccccccccc-------
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPISD------- 213 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~~~~~~~~------- 213 (380)
.|+||+++|.|+|+++|. +++.|||++|||+|++. ..+|.+|++++||+++||.|| .|++......
T Consensus 413 ~g~mG~~lpaaiGa~la~----p~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~~vV~NN~~~~~~~~~~~~~~~~~~ 486 (552)
T PRK08617 413 MQTLGVALPWAIAAALVR----PGKKVVSVSGDGGFLFS--AMELETAVRLKLNIVHIIWNDGHYNMVEFQEEMKYGRSS 486 (552)
T ss_pred cccccccccHHHhhHhhc----CCCcEEEEEechHHhhh--HHHHHHHHHhCCCeEEEEEECCccchHHHHHHhhcCCcc
Confidence 579999999999999874 78899999999999864 366999999999987766655 4665321110
Q ss_pred --ccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 214 --QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 214 --~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
.....|+.+.|++||+++.+|. ++.++.+++++|++ .++|+|||+.+.+
T Consensus 487 ~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~liev~~~~ 537 (552)
T PRK08617 487 GVDFGPVDFVKYAESFGAKGLRVT--SPDELEPVLREALA----TDGPVVIDIPVDY 537 (552)
T ss_pred cCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCcEEEEEEecc
Confidence 1124689999999999999998 89999999998875 4789999999865
|
|
| >PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.9e-14 Score=135.66 Aligned_cols=113 Identities=15% Similarity=0.068 Sum_probs=87.0
Q ss_pred cccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccccc--------
Q 016903 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD-------- 213 (380)
Q Consensus 143 g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~~~-------- 213 (380)
+++|.++|.|+|+++|. +++.|||+.|||++.. .-...+.+|+++++||++||.||+ |++...+..
T Consensus 68 ~~~G~alPaAiGaklA~----Pdr~VV~i~GDG~f~~-~g~~el~ta~r~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g~~ 142 (277)
T PRK09628 68 TTHGRAVAYATGIKLAN----PDKHVIVVSGDGDGLA-IGGNHTIHGCRRNIDLNFILINNFIYGLTNSQTSPTTPKGMW 142 (277)
T ss_pred eccccHHHHHHHHHHHC----CCCeEEEEECchHHHH-hhHHHHHHHHHhCcCeEEEEEEChHHhcceecccCCCCCCce
Confidence 47899999999998884 7899999999999853 112346679999999888877775 665431110
Q ss_pred --------ccCCcCHHHHHhhcCceEE---EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 214 --------QFRSDGAVVKGRAYGVRSI---RVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 214 --------~~~~~~~~~~a~a~G~~~~---~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
..+..|+++.|+++|++++ +|. ++.++.+++++|++ .+||+|||+.+
T Consensus 143 ~~~~~~g~~~~~~D~~~lA~a~G~~~va~~~v~--~~~el~~al~~Al~----~~Gp~lIeV~~ 200 (277)
T PRK09628 143 TVTAQYGNIDPTFDACKLATAAGASFVARESVI--DPQKLEKLLVKGFS----HKGFSFFDVFS 200 (277)
T ss_pred eeeccCCCcCCCCCHHHHHHHCCCceEEEEccC--CHHHHHHHHHHHHh----CCCCEEEEEcC
Confidence 0122477999999999985 566 99999999999986 48999999976
|
|
| >PRK08527 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.4e-14 Score=147.22 Aligned_cols=116 Identities=25% Similarity=0.292 Sum_probs=93.1
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cccccccc--------
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS-------- 212 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~~-------- 212 (380)
.|+||+++|.|+|+++|. ++++|||++|||+|++. ..| |.+|.+++||+|+||.||+ |++.....
T Consensus 413 ~g~mG~~l~~aiGa~la~----p~~~vv~i~GDG~f~m~-~~e-L~Ta~~~~lpvi~vV~NN~~~~~i~~~~~~~~~~~~ 486 (563)
T PRK08527 413 LGTMGYGLPAALGAKLAV----PDKVVINFTGDGSILMN-IQE-LMTAVEYKIPVINIILNNNFLGMVRQWQTFFYEERY 486 (563)
T ss_pred cccccchHHHHHHHHHhC----CCCcEEEEecCchhccc-HHH-HHHHHHhCCCeEEEEEECCcchhHHHHHHhhcCCce
Confidence 489999999999999884 57889999999999874 344 9999999999887776665 55432110
Q ss_pred ---cccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 016903 213 ---DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 269 (380)
Q Consensus 213 ---~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~ 269 (380)
......|+.+.|++||+++.+|+ +++++.++++++++ .++|+|||+.+.+.
T Consensus 487 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lieV~v~~~ 540 (563)
T PRK08527 487 SETDLSTQPDFVKLAESFGGIGFRVT--TKEEFDKALKEALE----SDKVALIDVKIDRF 540 (563)
T ss_pred eeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEECCc
Confidence 11123689999999999999998 89999999988875 47999999999763
|
|
| >PRK08322 acetolactate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.2e-14 Score=147.33 Aligned_cols=115 Identities=20% Similarity=0.266 Sum_probs=92.8
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEc-CCcccccccc--------
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRN-NGWAISTPIS-------- 212 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~N-N~~~~~~~~~-------- 212 (380)
.|+||+++|.|+|+++|. ++++|||++|||+|++. ..+|.+|.++++|+++||.| ++|++.....
T Consensus 405 ~g~mG~~lpaaiGa~la~----p~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~iiV~NN~~~g~~~~~~~~~~~~~~ 478 (547)
T PRK08322 405 LATMGAGLPSAIAAKLVH----PDRKVLAVCGDGGFMMN--SQELETAVRLGLPLVVLILNDNAYGMIRWKQENMGFEDF 478 (547)
T ss_pred cccccchhHHHHHHHHhC----CCCcEEEEEcchhHhcc--HHHHHHHHHhCCCeEEEEEeCCCcchHHHHHHhhcCCcc
Confidence 589999999999999884 78899999999999865 35699999999997776655 5576542110
Q ss_pred -cccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 213 -DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 213 -~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
.....+|+++.|++||+++.+|+ +++++.++++++++ .++|+|||+.+.+
T Consensus 479 ~~~~~~~df~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIev~v~~ 529 (547)
T PRK08322 479 GLDFGNPDFVKYAESYGAKGYRVE--SADDLLPTLEEALA----QPGVHVIDCPVDY 529 (547)
T ss_pred cccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 11124689999999999999998 89999999998875 4799999999854
|
|
| >TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.3e-14 Score=148.33 Aligned_cols=118 Identities=22% Similarity=0.291 Sum_probs=94.3
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccccccccc--------
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPIS-------- 212 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~~~~~~~-------- 212 (380)
.|+||+++|.|+|+++|. ++++|||++|||+|++. ..+|.+|.+++||+++||.|| +|++.....
T Consensus 429 ~g~mG~~lpaaiGa~la~----p~~~Vv~i~GDG~f~m~--~~eL~Tavr~~lpvi~vV~NN~~yg~i~~~~~~~~~~~~ 502 (579)
T TIGR03457 429 FGNCGYAFPTIIGAKIAA----PDRPVVAYAGDGAWGMS--MNEIMTAVRHDIPVTAVVFRNRQWGAEKKNQVDFYNNRF 502 (579)
T ss_pred cccccchHHHHHhhhhhC----CCCcEEEEEcchHHhcc--HHHHHHHHHhCCCeEEEEEECcchHHHHHHHHHhhCCcc
Confidence 489999999999999884 68899999999999875 366999999999977766655 476532111
Q ss_pred --cccCC-cCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 213 --DQFRS-DGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 213 --~~~~~-~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
..... .|+.+.|++||+++.+|+ +++++.+++++|++.. +.++|+|||+.+.+
T Consensus 503 ~~~~~~~~~d~~~lA~a~G~~g~~v~--~~~el~~al~~a~~~~-~~~~p~lieV~v~~ 558 (579)
T TIGR03457 503 VGTELESELSFAGIADAMGAKGVVVD--KPEDVGPALKKAIAAQ-AEGKTTVIEIVCTR 558 (579)
T ss_pred eeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhC-CCCCcEEEEEEeCC
Confidence 01122 489999999999999998 9999999999998643 24689999999954
|
Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur. |
| >PRK08155 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.1e-14 Score=147.41 Aligned_cols=115 Identities=19% Similarity=0.243 Sum_probs=94.3
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cccccccc--------
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS-------- 212 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~~-------- 212 (380)
.|+||+++|.|+|+++|. ++++|||++|||+|++. ..| |.+|.+++||+++||.||+ |++....+
T Consensus 418 ~g~mG~~lpaaiGa~la~----~~~~vv~i~GDGsf~~~-~~e-L~ta~~~~lpvi~vV~NN~~~g~~~~~q~~~~~~~~ 491 (564)
T PRK08155 418 LGTMGFGLPAAIGAALAN----PERKVLCFSGDGSLMMN-IQE-MATAAENQLDVKIILMNNEALGLVHQQQSLFYGQRV 491 (564)
T ss_pred cccccchhHHHHHHHHhC----CCCcEEEEEccchhhcc-HHH-HHHHHHhCCCeEEEEEeCCcccccHHHHHHhcCCCe
Confidence 489999999999999985 67899999999999875 445 9999999999888877776 77643211
Q ss_pred --ccc-CCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 213 --DQF-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 213 --~~~-~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
... ...|+++.|++||+++++|+ +++++.++++++++ .++|+|||+.+.+
T Consensus 492 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~~~~ 544 (564)
T PRK08155 492 FAATYPGKINFMQIAAGFGLETCDLN--NEADPQAALQEAIN----RPGPALIHVRIDA 544 (564)
T ss_pred eeccCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 111 24689999999999999999 88999888888875 4799999999954
|
|
| >TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.1e-14 Score=147.12 Aligned_cols=114 Identities=19% Similarity=0.170 Sum_probs=92.1
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cccc------c--ccc
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIS------T--PIS 212 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~------~--~~~ 212 (380)
.|+||+++|.|+|+++| ++++||+++|||+|++. ..+|.+|++++||+++||.||+ |... . +..
T Consensus 416 ~gsmG~~lpaaiGaala-----~~~~vv~i~GDGsf~m~--~~EL~Ta~r~~l~v~~vV~NN~~~~~~~~~~~~~~~~~~ 488 (554)
T TIGR03254 416 WGVMGIGMGYAIAAAVE-----TGKPVVALEGDSAFGFS--GMEVETICRYNLPVCVVIFNNGGIYRGDDVNVVGADPAP 488 (554)
T ss_pred CCcCCchHHHHHHHHhc-----CCCcEEEEEcCchhccc--HHHHHHHHHcCCCEEEEEEeChhhhhhhhhhhcCCCCCc
Confidence 48999999999999997 26889999999999875 3559999999999888888886 4111 0 000
Q ss_pred cc-cCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 213 DQ-FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 213 ~~-~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
.. ....||+++|++||+++.+|+ +++++.+++++|++ .++|+|||+.+.+
T Consensus 489 ~~~~~~~df~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~id~ 539 (554)
T TIGR03254 489 TVLVHGARYDKMMKAFGGVGYNVT--TPDELKAALNEALA----SGKPTLINAVIDP 539 (554)
T ss_pred cccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEECC
Confidence 11 135689999999999999998 99999999998875 4799999999854
|
In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase. |
| >PRK06466 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.2e-14 Score=147.66 Aligned_cols=117 Identities=25% Similarity=0.271 Sum_probs=94.0
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccc--------
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI-------- 211 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~-------- 211 (380)
..|+||+++|.|+|+++|. ++++|||++|||+|++. ..+|.+|.+++||+++||.||+ |++....
T Consensus 421 ~~gsmG~glpaAiGa~la~----p~r~Vv~i~GDG~f~m~--~~eL~Ta~r~~lpv~ivV~NN~~y~~i~~~q~~~~~~~ 494 (574)
T PRK06466 421 GLGTMGFGLPAAMGVKLAF----PDQDVACVTGEGSIQMN--IQELSTCLQYGLPVKIINLNNGALGMVRQWQDMQYEGR 494 (574)
T ss_pred CcchhhchHHHHHHHHHhC----CCCeEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHhcCCc
Confidence 3489999999999999884 68899999999999865 3669999999999777776664 6653211
Q ss_pred -ccc--cCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 212 -SDQ--FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 -~~~--~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
... ....||.+.|++||+++.+|+ ++.++.+++++|++. .++|+|||+.+.+
T Consensus 495 ~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~---~~~p~lIev~i~~ 549 (574)
T PRK06466 495 HSHSYMESLPDFVKLAEAYGHVGIRIT--DLKDLKPKLEEAFAM---KDRLVFIDIYVDR 549 (574)
T ss_pred eeecCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhc---CCCcEEEEEEeCC
Confidence 111 124689999999999999998 999999999988752 2799999999964
|
|
| >PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.1e-14 Score=134.51 Aligned_cols=134 Identities=16% Similarity=0.154 Sum_probs=97.8
Q ss_pred cccccchHHHHHHHHHhhhcCCCCeeEEEeCcccc-CcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccccc-------
Q 016903 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD------- 213 (380)
Q Consensus 143 g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~-~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~~~------- 213 (380)
+++|.++|.|+|+++|. +++.|||+.|||++ +.| ...|.+|+++++|+++||.||+ |++...+..
T Consensus 70 g~mG~alpaAiGaklA~----pd~~VV~i~GDG~~~~mg--~~eL~tA~r~nl~i~vIV~NN~~YG~t~gQ~s~t~~~g~ 143 (301)
T PRK05778 70 TLHGRAIAFATGAKLAN----PDLEVIVVGGDGDLASIG--GGHFIHAGRRNIDITVIVENNGIYGLTKGQASPTTPEGS 143 (301)
T ss_pred hhhccHHHHHHHHHHHC----CCCcEEEEeCccHHHhcc--HHHHHHHHHHCCCcEEEEEeCchhhcccCcccCCcCCCc
Confidence 78899999999998884 78899999999997 455 3459999999999888877775 665432110
Q ss_pred ---------ccCCcCHHHHHhhcCceEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee--cCCCCCCCCCCCCC
Q 016903 214 ---------QFRSDGAVVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY--RVGHHTTSDDSTKY 281 (380)
Q Consensus 214 ---------~~~~~~~~~~a~a~G~~~~-~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~--R~~gHs~~Dd~~~Y 281 (380)
.....|+..+|+++|+.++ ++.-.++.++.+++++|++ .+||+||++.+- -+++. ....
T Consensus 144 ~~~~~~~g~~~~~~d~~~lA~a~G~~~va~~~v~~~~eL~~ai~~A~~----~~GpalIeV~~~C~~~~~~-----~~~~ 214 (301)
T PRK05778 144 KTKTAPYGNIEPPIDPCALALAAGATFVARSFAGDVKQLVELIKKAIS----HKGFAFIDVLSPCVTFNGR-----NTST 214 (301)
T ss_pred ccccccCCCcCCCCCHHHHHHHCCCCEEEEeccCCHHHHHHHHHHHHh----CCCCEEEEEcCCCCCCCCc-----CCcc
Confidence 0123589999999999987 3344489999999999886 489999997652 12221 2234
Q ss_pred CChhhHHHHH
Q 016903 282 RPVDEIEWWR 291 (380)
Q Consensus 282 r~~~e~~~~~ 291 (380)
+++.++.+|-
T Consensus 215 ~~~~~~~~~~ 224 (301)
T PRK05778 215 KSPAYMREYY 224 (301)
T ss_pred cCHHHHHHHH
Confidence 5666666663
|
|
| >TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.2e-14 Score=147.73 Aligned_cols=115 Identities=21% Similarity=0.325 Sum_probs=93.1
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccc---------
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI--------- 211 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~--------- 211 (380)
.|+||+++|.|+|+++|. ++++|||++|||+|++. . .+|.+|.+++||+++||.||+ |++....
T Consensus 411 ~g~mG~~l~aaiGa~la~----~~~~vv~~~GDG~f~~~-~-~eL~ta~~~~l~~~~vv~NN~~~~~~~~~q~~~~~~~~ 484 (558)
T TIGR00118 411 LGTMGFGLPAAIGAKVAK----PESTVICITGDGSFQMN-L-QELSTAVQYDIPVKILILNNRYLGMVRQWQELFYEERY 484 (558)
T ss_pred cccccchhhHHHhhhhhC----CCCcEEEEEcchHHhcc-H-HHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcCCce
Confidence 489999999999998874 67899999999999874 3 469999999999888888776 4432200
Q ss_pred -c-cccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 212 -S-DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 -~-~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
. ......|+.+++++||+++++|+ +++++.++++++++ .++|+|||+.+.+
T Consensus 485 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~----~~~p~liev~~~~ 537 (558)
T TIGR00118 485 SHTHMGSLPDFVKLAEAYGIKGIRIE--KPEELDEKLKEALS----SNEPVLLDVVVDK 537 (558)
T ss_pred eeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 0 11124689999999999999999 78999999998886 3799999999964
|
Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed. |
| >PRK08611 pyruvate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=7e-14 Score=147.35 Aligned_cols=115 Identities=23% Similarity=0.273 Sum_probs=92.9
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Cccccccc---------
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI--------- 211 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~~~~~~--------- 211 (380)
.|+||+++|.|+|+++|. +++.|||++|||+|++. ..+|.+|++++||+++||.|| +|++....
T Consensus 407 ~g~mG~glpaaiGa~la~----p~~~Vv~i~GDGsf~m~--~~eL~Ta~r~~l~~iivV~NN~~~g~i~~~q~~~~~~~~ 480 (576)
T PRK08611 407 LGTMGCGLPGAIAAKIAF----PDRQAIAICGDGGFSMV--MQDFVTAVKYKLPIVVVVLNNQQLAFIKYEQQAAGELEY 480 (576)
T ss_pred chhhhhhHHHHHHHHHhC----CCCcEEEEEcccHHhhh--HHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCcc
Confidence 589999999999999874 68899999999999865 466999999999976666555 57653211
Q ss_pred ccccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 212 SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 ~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
.......|+++.|++||+++.+|+ +++++..+++++++ .++|+|||+.+.+
T Consensus 481 ~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIeV~vd~ 531 (576)
T PRK08611 481 AIDLSDMDYAKFAEACGGKGYRVE--KAEELDPAFEEALA----QDKPVIIDVYVDP 531 (576)
T ss_pred cccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 011234689999999999999998 89999999988875 4899999999965
|
|
| >PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-13 Score=145.13 Aligned_cols=115 Identities=25% Similarity=0.343 Sum_probs=93.1
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccc---------
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI--------- 211 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~--------- 211 (380)
.|+||+++|.|+|+++|. ++++|||++|||+|++. ..+|.+|.+++||+++||.||+ |++....
T Consensus 413 ~g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~--~~eL~Ta~~~~l~i~~vV~NN~~y~~i~~~~~~~~~~~~ 486 (561)
T PRK06048 413 LGTMGYGFPAAIGAKVGK----PDKTVIDIAGDGSFQMN--SQELATAVQNDIPVIVAILNNGYLGMVRQWQELFYDKRY 486 (561)
T ss_pred ccccccHHHHHHHHHHhC----CCCcEEEEEeCchhhcc--HHHHHHHHHcCCCeEEEEEECCccHHHHHHHHHHcCCcc
Confidence 489999999999999884 67899999999999875 3569999999999777666664 6543210
Q ss_pred ccc--cCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 212 SDQ--FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 ~~~--~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
... ....|+.+.|++||+++.+|+ ++.++.+++++|++ .++|+|||+.+.+
T Consensus 487 ~~~~~~~~~d~~~lA~a~G~~~~~v~--t~~el~~al~~a~~----~~~p~liev~~~~ 539 (561)
T PRK06048 487 SHTCIKGSVDFVKLAEAYGALGLRVE--KPSEVRPAIEEAVA----SDRPVVIDFIVEC 539 (561)
T ss_pred cccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 011 134689999999999999998 89999999999875 4799999999965
|
|
| >TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.8e-14 Score=145.71 Aligned_cols=114 Identities=21% Similarity=0.216 Sum_probs=90.5
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccccccccc-----ccc
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPIS-----DQF 215 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~~~~~~~-----~~~ 215 (380)
.|+||+++|.|+|+++|. ++++|+++|||+|++. ..+|.+|.+++||+++||.|| +|++..... ...
T Consensus 402 ~g~mG~glpaaiGa~lA~-----~~r~v~i~GDG~f~m~--~~EL~Ta~r~~lpv~~vV~NN~~y~~~~~~~~~~~~~~~ 474 (535)
T TIGR03394 402 YAGMGFGVPAGIGAQCTS-----GKRILTLVGDGAFQMT--GWELGNCRRLGIDPIVILFNNASWEMLRVFQPESAFNDL 474 (535)
T ss_pred cchhhhHHHHHHHHHhCC-----CCCeEEEEeChHHHhH--HHHHHHHHHcCCCcEEEEEECCccceeehhccCCCcccC
Confidence 589999999999999884 3456889999999853 466999999999977766655 577543221 122
Q ss_pred CCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016903 216 RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 216 ~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~ 267 (380)
...|+++.|++||+++.+|+ ++.++..++++|++. .++|+|||+.+.
T Consensus 475 ~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~---~~~p~lIev~i~ 521 (535)
T TIGR03394 475 DDWRFADMAAGMGGDGVRVR--TRAELAAALDKAFAT---RGRFQLIEAMLP 521 (535)
T ss_pred CCCCHHHHHHHcCCCceEeC--CHHHHHHHHHHHHhc---CCCeEEEEEECC
Confidence 34689999999999999999 899999999998852 356899999873
|
A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase. |
| >PRK09259 putative oxalyl-CoA decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.5e-13 Score=144.61 Aligned_cols=114 Identities=18% Similarity=0.123 Sum_probs=92.4
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccc--------c-c
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIST--------P-I 211 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~--------~-~ 211 (380)
.|+||+++|.|+|+++| ++++|||++|||+|++. ..+|.+|++++||+++||.||+ |-... . .
T Consensus 423 ~gsmG~glpaaiGa~la-----~~~~vv~i~GDG~f~m~--~~EL~Ta~r~~lpi~~vV~NN~~~~~~~~~~~~~~~~~~ 495 (569)
T PRK09259 423 WGVMGIGMGYAIAAAVE-----TGKPVVAIEGDSAFGFS--GMEVETICRYNLPVTVVIFNNGGIYRGDDVNLSGAGDPS 495 (569)
T ss_pred CccccccHHHHHHHHhc-----CCCcEEEEecCcccccc--HHHHHHHHHcCCCEEEEEEeChhHHHHHHHHhhcCCCcc
Confidence 58999999999999988 26789999999999865 3559999999999999888887 31110 0 0
Q ss_pred ccc-cCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 212 SDQ-FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 ~~~-~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
... .+..|+++.|++||+++++|+ +++++.+++++|++ .++|+|||+.+.+
T Consensus 496 ~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~id~ 547 (569)
T PRK09259 496 PTVLVHHARYDKMMEAFGGVGYNVT--TPDELRHALTEAIA----SGKPTLINVVIDP 547 (569)
T ss_pred ccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEECC
Confidence 011 135689999999999999998 89999999999875 4799999999854
|
|
| >PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.6e-13 Score=143.87 Aligned_cols=115 Identities=19% Similarity=0.235 Sum_probs=93.0
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Cccccccc---------
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI--------- 211 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~~~~~~--------- 211 (380)
.|+||+++|.|+|+++|. ++++|||++|||+|++. ..+|.+|.++++|+++||.|| +|++....
T Consensus 400 ~g~mG~glpaAiGa~la~----p~~~vv~i~GDG~f~~~--~~eL~ta~~~~l~v~ivV~NN~~~~~~~~~~~~~~~~~~ 473 (548)
T PRK08978 400 LGTMGFGLPAAIGAQVAR----PDDTVICVSGDGSFMMN--VQELGTIKRKQLPVKIVLLDNQRLGMVRQWQQLFFDERY 473 (548)
T ss_pred hhhhhchHHHHHHHHHhC----CCCcEEEEEccchhhcc--HHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHHhCCcc
Confidence 489999999999999884 68899999999999865 356999999999977766655 56643211
Q ss_pred c-ccc-CCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 212 S-DQF-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 ~-~~~-~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
. ... ...|+++.|++||+++.+|+ +++++.++++++++ .++|+|||+.+.+
T Consensus 474 ~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~id~ 526 (548)
T PRK08978 474 SETDLSDNPDFVMLASAFGIPGQTIT--RKDQVEAALDTLLN----SEGPYLLHVSIDE 526 (548)
T ss_pred eecCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 0 011 23689999999999999998 99999999998875 4799999999965
|
|
| >PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.3e-13 Score=130.27 Aligned_cols=115 Identities=10% Similarity=0.078 Sum_probs=89.4
Q ss_pred cccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cccccccc---------
Q 016903 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS--------- 212 (380)
Q Consensus 143 g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~~--------- 212 (380)
+.+|.++|.|+|+++| .+++.|||+.|||++.... ...|.+|+++++|+++||.||+ |++...+.
T Consensus 60 ~~mG~alp~AiGaklA----~pd~~VVai~GDG~~~~iG-~~eL~tA~r~nl~i~~IV~NN~~Yg~t~~Q~s~~t~~g~~ 134 (280)
T PRK11869 60 TLHGRAIPAATAVKAT----NPELTVIAEGGDGDMYAEG-GNHLIHAIRRNPDITVLVHNNQVYGLTKGQASPTTLKGFK 134 (280)
T ss_pred cccccHHHHHHHHHHH----CCCCcEEEEECchHHhhCc-HHHHHHHHHhCcCcEEEEEECHHHhhhcceecCCCCCCcc
Confidence 5589999999999877 4789999999999986211 3559999999999988888776 55432111
Q ss_pred -------cccCCcCHHHHHhhcCceEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 213 -------DQFRSDGAVVKGRAYGVRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 213 -------~~~~~~~~~~~a~a~G~~~~~V-dG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
......|+.++|+++|++++.. +-.++.++.+++++|++ .+||+||++.+
T Consensus 135 ~~~~p~g~~~~~~D~~~lA~a~G~~~va~~~~~~~~~l~~~i~~Al~----~~Gp~lIeV~~ 192 (280)
T PRK11869 135 TPTQPWGVFEEPFNPIALAIALDASFVARTFSGDIEETKEILKEAIK----HKGLAIVDIFQ 192 (280)
T ss_pred cccCCCCccCCCCCHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHHHh----CCCCEEEEEEC
Confidence 0112358999999999998872 24499999999999996 48999999976
|
|
| >PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.1e-14 Score=146.17 Aligned_cols=112 Identities=21% Similarity=0.153 Sum_probs=89.3
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccc----c----
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI----S---- 212 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~----~---- 212 (380)
.++||+++|.|+|+++| ++++|||++|||+|++.. .+|.+|+++++|+++||.||+ |++.... .
T Consensus 424 ~~~~G~~lpaaiGaala-----~~~~vv~i~GDGsf~~~~--~eL~Ta~r~~l~i~ivVlNN~g~~~~~~~~~~~~~~~~ 496 (568)
T PRK07449 424 ASGIDGLLSTAAGVARA-----SAKPTVALIGDLSFLHDL--NGLLLLKQVPAPLTIVVVNNNGGGIFSLLPQPEEEPVF 496 (568)
T ss_pred ccchhhHHHHHHHHHhc-----CCCCEEEEechHHhhcCc--HHHHhhcccCCCeEEEEEECCCCccccCCCCCCCcchh
Confidence 36799999999999887 377899999999998653 559999999999777776665 6632111 0
Q ss_pred ----cccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 213 ----DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 213 ----~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
......|+++.|++||+++.+|+ +++++.+++++|++ .++|+|||+.+
T Consensus 497 ~~~~~~~~~~df~~lA~a~G~~~~~V~--~~~eL~~al~~a~~----~~~p~lIev~i 548 (568)
T PRK07449 497 ERFFGTPHGVDFAHAAAMYGLEYHRPE--TWAELEEALADALP----TPGLTVIEVKT 548 (568)
T ss_pred hHhhcCCCCCCHHHHHHHcCCCccCCC--CHHHHHHHHHHHhc----CCCCEEEEEeC
Confidence 01124689999999999999998 89999999999874 47999999987
|
|
| >PRK06276 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.2e-13 Score=142.60 Aligned_cols=115 Identities=26% Similarity=0.348 Sum_probs=92.8
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccc---------
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI--------- 211 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~--------- 211 (380)
.|+||+++|.|+|+++|. +++.|||++|||+|++. ..+|.+|.+++||+++||.||+ |++....
T Consensus 418 ~gsmG~~lpaaiGa~la~----p~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~~vV~NN~~~g~~~~~~~~~~~~~~ 491 (586)
T PRK06276 418 LGTMGFGFPAAIGAKVAK----PDANVIAITGDGGFLMN--SQELATIAEYDIPVVICIFDNRTLGMVYQWQNLYYGKRQ 491 (586)
T ss_pred ccccccchhHHHhhhhhc----CCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHHhCCCc
Confidence 489999999999999884 67889999999999865 3569999999999877776665 6653211
Q ss_pred ccc-c-CCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 212 SDQ-F-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 ~~~-~-~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
... . ...|+.+.+++||+++.+|+ +++++..+++++++ .++|+|||+.+.+
T Consensus 492 ~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~i~~ 544 (586)
T PRK06276 492 SEVHLGETPDFVKLAESYGVKADRVE--KPDEIKEALKEAIK----SGEPYLLDIIIDP 544 (586)
T ss_pred ccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecc
Confidence 001 1 24689999999999999998 99999999998875 4799999999854
|
|
| >PRK07789 acetolactate synthase 1 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.7e-13 Score=145.33 Aligned_cols=116 Identities=22% Similarity=0.303 Sum_probs=92.6
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccccccccc--------
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPIS-------- 212 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~~~~~~~-------- 212 (380)
.|+||+++|.|+|+++|. +++.|+|++|||+|++. ..+|.+|++++||+++||.|| +|++....+
T Consensus 446 ~G~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~i~~~q~~~~~~~~ 519 (612)
T PRK07789 446 LGTMGYAVPAAMGAKVGR----PDKEVWAIDGDGCFQMT--NQELATCAIEGIPIKVALINNGNLGMVRQWQTLFYEERY 519 (612)
T ss_pred cccccchhhhHHhhhccC----CCCcEEEEEcchhhhcc--HHHHHHHHHcCCCeEEEEEECCchHHHHHHHHHhhCCCc
Confidence 478999999999998884 68899999999999864 467999999999977766655 476532110
Q ss_pred --ccc-----CCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 213 --DQF-----RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 213 --~~~-----~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
... ...|+++.|++||+++.+|+ +++++..++++|++. .++|+|||+.+.+
T Consensus 520 ~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~~---~~~p~lIev~i~~ 577 (612)
T PRK07789 520 SNTDLHTHSHRIPDFVKLAEAYGCVGLRCE--REEDVDAVIEKARAI---NDRPVVIDFVVGK 577 (612)
T ss_pred ceeecCcCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhc---CCCcEEEEEEECC
Confidence 000 12589999999999999998 999999999998863 3689999999964
|
|
| >PRK07282 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=2e-13 Score=143.61 Aligned_cols=114 Identities=24% Similarity=0.373 Sum_probs=90.4
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Cccccccc---------
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI--------- 211 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~~~~~~--------- 211 (380)
.|+||+++|.|+|+++|. +++.|||++|||+|++. ..+|.+|.+++||+++||.|| +|++....
T Consensus 417 ~g~mG~glpaaiGa~lA~----p~~~Vv~i~GDG~f~m~--~~eL~Ta~~~~l~i~~vV~NN~~y~~i~~~q~~~~~~~~ 490 (566)
T PRK07282 417 LGTMGFGIPAAIGAKIAN----PDKEVILFVGDGGFQMT--NQELAILNIYKVPIKVVMLNNHSLGMVRQWQESFYEGRT 490 (566)
T ss_pred cccccchhhHhheeheec----CCCcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCCCchHHHHHHHHHhCCCc
Confidence 589999999999998874 78899999999999865 356999999999977766655 47653211
Q ss_pred c-ccc-CCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 212 S-DQF-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 ~-~~~-~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
. ... ...||++.|++||+++.+|+ ++.++.++++ +.. .++|+|||+.+.+
T Consensus 491 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~-~~~----~~~p~lIeV~v~~ 542 (566)
T PRK07282 491 SESVFDTLPDFQLMAQAYGIKHYKFD--NPETLAQDLE-VIT----EDVPMLIEVDISR 542 (566)
T ss_pred ccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHH-Hhc----CCCCEEEEEEeCC
Confidence 1 112 34689999999999999998 8999988886 332 4799999999965
|
|
| >PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=8e-13 Score=126.62 Aligned_cols=115 Identities=20% Similarity=0.241 Sum_probs=90.6
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCcc-ccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccccccc----
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDG-GTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISDQF---- 215 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG-~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~~~~~---- 215 (380)
.+++|.++|.|+|+++|. ++..||+++||| ++..|. ..|.+|+++++|+++||.||+ |++...+...+
T Consensus 58 ~~~~G~alp~A~GaklA~----Pd~~VV~i~GDG~~f~ig~--~eL~tA~rrn~~i~vIV~nN~~ygmtggQ~s~~t~~g 131 (279)
T PRK11866 58 HGIHGRVLPIATGVKWAN----PKLTVIGYGGDGDGYGIGL--GHLPHAARRNVDITYIVSNNQVYGLTTGQASPTTPRG 131 (279)
T ss_pred ccccccHHHHHHHHHHHC----CCCcEEEEECChHHHHccH--HHHHHHHHHCcCcEEEEEEChhhhhhcccccCCCCCC
Confidence 578899999999998884 788999999999 688773 559999999999888887775 55543211100
Q ss_pred ------------CCcCHHHHHhhcCceEEE-EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 216 ------------RSDGAVVKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 216 ------------~~~~~~~~a~a~G~~~~~-VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
...|+.+.|+++|++.+. ....++.++.+++++|++ .+||.||++..
T Consensus 132 ~~t~~t~~g~~~~~~d~~~iA~a~G~~~Va~~~~~~~~~l~~~l~~Al~----~~Gps~I~v~~ 191 (279)
T PRK11866 132 VKTKTTPDGNIEEPFNPIALALAAGATFVARGFSGDVKHLKEIIKEAIK----HKGFSFIDVLS 191 (279)
T ss_pred ceeeccCCCCCCCCCCHHHHHHHCCCCEEEEEcCCCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 012899999999998665 455799999999999986 48999999875
|
|
| >PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.6e-13 Score=126.77 Aligned_cols=115 Identities=17% Similarity=0.139 Sum_probs=88.5
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccc-cCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccccc------
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGG-TSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD------ 213 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~-~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~~~------ 213 (380)
.+++|.++|.|+|+++| .+++.|||+.|||+ ++.|. ..|.+|+++++|+++||.||+ |++...+..
T Consensus 68 ~g~mG~alpaAiGaklA----~Pd~~VV~i~GDG~~f~mg~--~eL~tA~r~nl~i~vIV~NN~~yGmt~~q~s~tt~~g 141 (286)
T PRK11867 68 HTIHGRALAIATGLKLA----NPDLTVIVVTGDGDALAIGG--NHFIHALRRNIDITYILFNNQIYGLTKGQYSPTSPVG 141 (286)
T ss_pred hhhhhcHHHHHHHHHHh----CCCCcEEEEeCccHHHhCCH--HHHHHHHHhCCCcEEEEEeCHHHhhhcCccCCCCCCC
Confidence 37899999999999888 47899999999996 77663 458999999999888777665 665432110
Q ss_pred -c---------cCCcCHHHHHhhcCceEEE-EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 214 -Q---------FRSDGAVVKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 214 -~---------~~~~~~~~~a~a~G~~~~~-VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
. ....++.++|.++|...+. +.-.++.++.+++++|++ .+||+|||+.+
T Consensus 142 ~~~~~~~~g~~~~~~d~~~lA~a~Ga~~va~~~~~~~~el~~al~~Al~----~~Gp~lIev~~ 201 (286)
T PRK11867 142 FVTKTTPYGSIEPPFNPVELALGAGATFVARGFDSDVKQLTELIKAAIN----HKGFSFVEILQ 201 (286)
T ss_pred cccccccCCCCCCCCCHHHHHHHCCCcEEEEecCCCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 0 0124788999999998764 344589999999999886 48999999975
|
|
| >TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family | Back alignment and domain information |
|---|
Probab=99.41 E-value=9.2e-13 Score=126.58 Aligned_cols=113 Identities=14% Similarity=0.155 Sum_probs=85.3
Q ss_pred cccccchHHHHHHHHHhhhcCCCCeeEEEeCcccc-CcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccccccc-----
Q 016903 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISDQF----- 215 (380)
Q Consensus 143 g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~-~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~~~~~----- 215 (380)
+.+|.++|.|+|+++| .+++.|||+.|||++ .+| ...|.+|+++++|+++||.||+ |++...+...+
T Consensus 53 t~mG~alPaAiGaklA----~Pd~~VVai~GDG~f~~mg--~~eL~tA~r~nl~I~vIVlNN~~yGmt~gQ~sp~t~~G~ 126 (287)
T TIGR02177 53 GLHGRALPVATGIKLA----NPHLKVIVVGGDGDLYGIG--GNHFVAAGRRNVDITVIVHDNQVYGLTKGQASPTLLKGV 126 (287)
T ss_pred cccccHHHHHHHHHHH----CCCCcEEEEeCchHHHhcc--HHHHHHHHHhCcCeEEEEEECHHHHhhhcccccCccCCc
Confidence 5579999999999887 478999999999997 355 3559999999999888887775 55543221100
Q ss_pred -------------CCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 216 -------------RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 216 -------------~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
..+++..+|.++|+.+...- .++.++.+++++|++ .+||+||++.+
T Consensus 127 ~~~~~~~g~~~~~~np~~~a~A~g~g~va~~~~-~~~~eL~~ai~~Al~----~~GpslIeV~~ 185 (287)
T TIGR02177 127 KTKSLPYPNIQDPVNPLLLAIALGYTFVARGFS-GDVAHLKEIIKEAIN----HKGYALVDILQ 185 (287)
T ss_pred ceeecccCccCCCCCHHHHHHhCCCCeEEEEec-CCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 02246677888887777632 489999999999986 48999999975
|
Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes. |
| >TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.2e-12 Score=134.25 Aligned_cols=120 Identities=16% Similarity=0.082 Sum_probs=91.0
Q ss_pred ccccCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Cccccccccc---
Q 016903 138 YFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPISD--- 213 (380)
Q Consensus 138 ~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~~~~~~~~--- 213 (380)
.....++||.++|.|+|+++|. ++++||+++|||+|..... .+|.+|.++++|+++||.|| .|++...+..
T Consensus 398 ~~~~~~~mG~~~~~AiGa~~a~----p~~~Vv~i~GDG~f~~~g~-~eL~tav~~~~~i~~vVlnN~~~g~~~~q~~~~~ 472 (595)
T TIGR03336 398 TVDTTLCMGASIGVASGLSKAG----EKQRIVAFIGDSTFFHTGI-PGLINAVYNKANITVVILDNRITAMTGHQPNPGT 472 (595)
T ss_pred ccceeeccCchHHHHhhhhhcC----CCCCEEEEeccchhhhcCH-HHHHHHHHcCCCeEEEEEcCcceeccCCCCCCCC
Confidence 3344689999999999998873 6789999999999975323 45889999999988877666 5776542211
Q ss_pred -------ccCCcCHHHHHhhcCceEEEEeC-CCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 214 -------QFRSDGAVVKGRAYGVRSIRVDG-NDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 214 -------~~~~~~~~~~a~a~G~~~~~VdG-~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
.....|+.+.++++|+++++|.- .+..++.++++++++ .++|++|++..
T Consensus 473 ~~~~~~~~~~~~d~~~ia~a~G~~~~~v~~~~~l~~l~~al~~a~~----~~gp~li~v~~ 529 (595)
T TIGR03336 473 GVTGMGEATKEISIEELCRASGVEFVEVVDPLNVKETIEVFKAALA----AEGVSVIIAKQ 529 (595)
T ss_pred CCCCCCCcCCCcCHHHHHHHcCCCEEEEeCcCCHHHHHHHHHHHHh----cCCCEEEEEcc
Confidence 01246899999999999999863 455667888888875 47999999854
|
Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase. |
| >PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-10 Score=112.65 Aligned_cols=126 Identities=18% Similarity=0.169 Sum_probs=99.6
Q ss_pred CCccccCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccccc-
Q 016903 136 HNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD- 213 (380)
Q Consensus 136 ~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~~~- 213 (380)
.+.....+.+|.+.++|.|++.|.+..+++..||++.|||++..-.+ ++|.-|...+.|+++||.||. |+.++-+..
T Consensus 62 ~~~~~~~~~fg~~~a~a~Gi~~a~~~~~~~~~Vv~~~GDG~~~dIG~-~~L~~a~~r~~ni~~ivlDNe~Y~nTGgQ~S~ 140 (299)
T PRK11865 62 WNVPWIHVAFENAAAVASGIERAVKALGKKVNVVAIGGDGGTADIGF-QSLSGAMERGHNILYLMYDNEAYMNTGIQRSG 140 (299)
T ss_pred cccccchhhhcchHHHHHHHHHHHHHhcCCCeEEEEeCCchHhhccH-HHHHHHHHcCCCeEEEEECCccccCCCCCCCC
Confidence 34556678999999999999999887677789999999999843323 779999999999999999887 443322111
Q ss_pred --------------------ccCCcCHHHHHhhcCceEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 214 --------------------QFRSDGAVVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 214 --------------------~~~~~~~~~~a~a~G~~~~-~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
.....|+..++.++|++.+ +++-.++.++.+++++|.+ .+||.||++.+
T Consensus 141 ~Tp~Ga~t~tsp~Gk~~~G~~~~kkd~~~Ia~a~g~~YVA~~~~~~~~~l~~~i~~A~~----~~Gps~I~v~s 210 (299)
T PRK11865 141 STPFGASTTTSPAGKYSRGEDRPKKNMPLIMAAHGIPYVATASIGYPEDFMEKVKKAKE----VEGPAYIQVLQ 210 (299)
T ss_pred CCCCCcccccCCCCcccCCCCCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHh----CCCCEEEEEEC
Confidence 1224578899999999877 5777899999999999986 48999999875
|
|
| >COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.9e-11 Score=122.99 Aligned_cols=163 Identities=20% Similarity=0.256 Sum_probs=114.5
Q ss_pred chhhHHHHHHHhcCCCCcEEEcccccHHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCc--cccCcccccc
Q 016903 71 SGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNY--FTVSSTIATQ 148 (380)
Q Consensus 71 ~G~Ea~~~~~~~~l~~~D~v~~~yR~~~~~l~~G~~~~~~~~e~~g~~~~~~~G~~~~~H~~~~~~~~--~~~~g~lG~~ 148 (380)
+-||-..-.++..|+++|+|+.- .|- .+||- ... .......+ .+-.|++|+.
T Consensus 363 Ltq~~~w~~~~~fl~p~dviiae-tGt---------------S~FG~-------~~~---~lP~~~~~i~Q~lWGSIG~t 416 (557)
T COG3961 363 LTQEWLWNTVQNFLKPGDVIIAE-TGT---------------SFFGA-------LDI---RLPKGATFISQPLWGSIGYT 416 (557)
T ss_pred ccHHHHHHHHHhhCCCCCEEEEc-ccc---------------ccccc-------eee---ecCCCCeEEcccchhhcccc
Confidence 55677777788899999999863 111 13331 111 11111222 3347999999
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCC-CEEEEEEcCCccccccccccc------CCcCHH
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQF------RSDGAV 221 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~~~~~~~~~~~~------~~~~~~ 221 (380)
+|.|+|+++|. +++++|.|+||||+|. .-+++.+-.+|+| |+|||++|++|.|........ ..-++.
T Consensus 417 ~pAalGa~~A~----~drR~IL~iGDGs~Ql--TvQEiStmiR~gl~p~ifvlNN~GYTIEr~IHg~~~~YNdI~~Wd~~ 490 (557)
T COG3961 417 LPAALGAALAA----PDRRVILFIGDGSLQL--TVQEISTMIRWGLKPIIFVLNNDGYTIERAIHGPTAPYNDIQSWDYT 490 (557)
T ss_pred cHhhhhhhhcC----CCccEEEEEcCchhhh--hHHHHHHHHHcCCCcEEEEEcCCCcEEEehhcCCCcCcccccccchh
Confidence 99999999996 6799999999999985 4566999999999 899999999998876655421 124788
Q ss_pred HHHhhcCceEEEE--eCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 222 VKGRAYGVRSIRV--DGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 222 ~~a~a~G~~~~~V--dG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
++.++||..-... .-...+.+..++..+.+ ..+++.+|||++.+
T Consensus 491 ~l~~afg~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~i~lIEv~lp~ 536 (557)
T COG3961 491 ALPEAFGAKNGEAKFRATTGEELALALDVAFA---NNDRIRLIEVMLPV 536 (557)
T ss_pred hhhhhcCCCCceEEEeecChHHHHHHHHHHhc---CCCceEEEEEecCc
Confidence 8999998743322 22255666677766665 35689999999855
|
|
| >PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.5e-11 Score=141.00 Aligned_cols=116 Identities=18% Similarity=0.133 Sum_probs=91.7
Q ss_pred ccCccccc--chHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHc--CCCEEEEEEcCC-ccccccc---
Q 016903 140 TVSSTIAT--QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT--EAPVIFICRNNG-WAISTPI--- 211 (380)
Q Consensus 140 ~~~g~lG~--~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~--~Lpvi~vv~NN~-~~~~~~~--- 211 (380)
.+.|++|. ++|.|+|+++|. +++|+|++|||+|++. ..+|.+|+++ ++|+++||.||+ |++....
T Consensus 756 ~~~G~mG~~G~lpaAIGaala~-----~r~Vv~i~GDGsF~m~--~~EL~Ta~r~~~~lpi~iVV~NN~gggi~~~l~~~ 828 (1655)
T PLN02980 756 GNRGASGIDGLLSTAIGFAVGC-----NKRVLCVVGDISFLHD--TNGLSILSQRIARKPMTILVINNHGGAIFSLLPIA 828 (1655)
T ss_pred ecCCccchhhhHHHHHHHhhcC-----CCCEEEEEehHHHHhh--hhHHHHhhcccCCCCEEEEEEeCCCcHhhhcCccC
Confidence 45688998 599999999874 6789999999999754 4669999884 999888777666 5543210
Q ss_pred ---cc----c----cCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 212 ---SD----Q----FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 ---~~----~----~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
.. . ....|+.+.|++||+++.+|+ +++++.++++++.+ .++|+|||+.|.|
T Consensus 829 ~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~rV~--~~~eL~~aL~~a~~----~~~p~lIEV~t~~ 890 (1655)
T PLN02980 829 KRTEPRVLNQYFYTSHDISIENLCLAHGVRHLHVG--TKSELEDALFTSQV----EQMDCVVEVESSI 890 (1655)
T ss_pred CCCcchhHHHHhcCCCCCCHHHHHHHcCCceeecC--CHHHHHHHHHHhhc----cCCCEEEEEecCh
Confidence 00 0 124689999999999999999 89999999988774 5899999999954
|
|
| >KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.6e-10 Score=115.28 Aligned_cols=118 Identities=20% Similarity=0.214 Sum_probs=91.3
Q ss_pred ccCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-C-cccccccc-----
Q 016903 140 TVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-G-WAISTPIS----- 212 (380)
Q Consensus 140 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~-~~~~~~~~----- 212 (380)
++.|+||-|++.|+++|++. +++.|+|+.||++|.-. .-++.++.+||||||.||.|| + |+.+....
T Consensus 427 GtfgTMGVG~Gfalaaa~~~----P~~~V~~veGDsaFGfS--aME~ET~vR~~Lpvv~vV~NN~Giyg~d~~~~~~I~e 500 (571)
T KOG1185|consen 427 GTFGTMGVGLGFALAAALAA----PDRKVVCVEGDSAFGFS--AMELETFVRYKLPVVIVVGNNNGIYGLDDDGWKQISE 500 (571)
T ss_pred ccccccccchhHHHHHHhhC----CCCeEEEEecCcccCcc--hhhHHHHHHhcCCeEEEEecCCcccccCcccHHHHhh
Confidence 45688888887777777764 99999999999999643 234899999999988888766 3 33332211
Q ss_pred ----------cccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 213 ----------DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 213 ----------~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
......++.+.+++||.++..|+ .++++..++++++. .+++|++|.+..-+
T Consensus 501 ~~~~~~~p~~~l~~~~rY~~v~ka~G~kG~~v~--t~~el~~~l~~a~q---~~~~psvINVlI~p 561 (571)
T KOG1185|consen 501 QDPTLDLPPTALLANTRYDKVAKAFGGKGYFVS--TVEELLAALQQACQ---DTDKPSVINVLIGP 561 (571)
T ss_pred cCcccCCCcccccccccHHHHHHHcCCCceeeC--CHHHHHHHHHHHHh---cCCCCeEEEEEecc
Confidence 11234578899999999999999 99999999999886 46799999998744
|
|
| >COG3960 Glyoxylate carboligase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.4e-09 Score=104.32 Aligned_cols=157 Identities=21% Similarity=0.225 Sum_probs=116.5
Q ss_pred HHHHHhhcCCCCCCCCCCCc-------cccCCCCCCc---cccCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccC
Q 016903 109 EFANQCFGNKADYGKGRQMP-------IHYGSNKHNY---FTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTS 178 (380)
Q Consensus 109 ~~~~e~~g~~~~~~~G~~~~-------~H~~~~~~~~---~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~ 178 (380)
+-|.++||+...+..--+++ .|.. .+.. .+..|++|+.+|.|+|...| .+++.+|++.||-.|+
T Consensus 377 eemn~~fgrd~~yvstiglsqia~aqflhv~--~pr~wincgqagplgwtipaalgv~~a----dp~r~vvalsgdydfq 450 (592)
T COG3960 377 EEMNKAFGRDVCYVTTIGLSQIAAAQFLHVF--KPRHWINCGQAGPLGWTIPAALGVCAA----DPKRNVVAISGDYDFQ 450 (592)
T ss_pred HHHHhhcCCceeEEEeccHHHHhhhhhhhhc--CCcceeecCccCCcccccchhhceeec----CCCCceEEeecCchHH
Confidence 45777888765432221221 2322 2332 33468999999999998554 5889999999999998
Q ss_pred cchHHHHHHHHHHcCCCEEEEEEcCCcccccc-ccc--------cc------------CCcCHHHHHhhcCceEEEEeCC
Q 016903 179 EGDFHAALNFSAVTEAPVIFICRNNGWAISTP-ISD--------QF------------RSDGAVVKGRAYGVRSIRVDGN 237 (380)
Q Consensus 179 eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~-~~~--------~~------------~~~~~~~~a~a~G~~~~~VdG~ 237 (380)
...|.|...+++|||.|+|+.||.|--... .++ +. ...|..+.++++|++.++|-
T Consensus 451 --fmieelavgaq~k~pyihv~vnnaylglirqaqr~f~mdy~v~laf~nin~~~~~gygvdhv~v~eglgckairv~-- 526 (592)
T COG3960 451 --FLIEELAVGAQFKIPYIHVLVNNAYLGLIRQAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF-- 526 (592)
T ss_pred --HHHHHHhhhhcccCceEEEEecchHHHHHHHHHhcCCccceeeehhhccCCccccccCccceeehhccCceeEEec--
Confidence 467999999999999999999998722111 111 10 12355678999999999998
Q ss_pred CHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCC
Q 016903 238 DALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS 275 (380)
Q Consensus 238 D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~ 275 (380)
++.++..++.+|...+.+..-|++||+..-|...-|++
T Consensus 527 ~p~e~a~af~~a~~lm~eh~vpvvve~ilervtnismg 564 (592)
T COG3960 527 KPEDIAPAFEQAKALMAQHRVPVVVEVILERVTNISMG 564 (592)
T ss_pred ChHHhhHHHHHHHHHHHhcCCCeeeehHHHHhhccccc
Confidence 99999999999998888889999999999998766654
|
|
| >KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.9e-09 Score=106.14 Aligned_cols=117 Identities=21% Similarity=0.230 Sum_probs=94.0
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCc-ccccccc-------
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGW-AISTPIS------- 212 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~-~~~~~~~------- 212 (380)
..|.||.|+|.|+|+..| +++..||=+-||++|.+. ...|.++.+.++||-+++.||.- ++.+..+
T Consensus 522 GLGtMGfGLPAAIGAsVA----~P~~iViDIDGDaSF~Mt--~~ELat~rq~~~PVKiLiLNNeeqGMVtQWq~lFYe~r 595 (675)
T KOG4166|consen 522 GLGTMGFGLPAAIGASVA----NPDAIVIDIDGDASFIMT--VQELATIRQENLPVKILILNNEEQGMVTQWQDLFYEAR 595 (675)
T ss_pred CccccccCcchhhccccc----CcccEEEeccCCceeeee--hHhhhhhhhcCCceEEEEecchhhhhHHHHHHHHHHhh
Confidence 357999999999999877 589999999999999753 34599999999999999988863 3322211
Q ss_pred ---cccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 016903 213 ---DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 269 (380)
Q Consensus 213 ---~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~ 269 (380)
...-++++.++|.++|+++.+|. .-+++.+.+++.+. .+||+|+|+.+...
T Consensus 596 ysHThQ~nPnf~klA~AmGikalRV~--K~edL~~k~kefls----TkGPvLleV~v~~k 649 (675)
T KOG4166|consen 596 YSHTHQENPNFLKLAAAMGIKALRVT--KKEDLREKIKEFLS----TKGPVLLEVIVPHK 649 (675)
T ss_pred hccccccCccHHHHHHhcCCchheee--hHHHHHHHHHHHhC----CCCCeEEEEEccCc
Confidence 11235789999999999999998 77888888888875 68999999988543
|
|
| >KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.3e-08 Score=102.57 Aligned_cols=121 Identities=18% Similarity=0.190 Sum_probs=91.1
Q ss_pred cccCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCC-CEEEEEEcCCcccccccccc---
Q 016903 139 FTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQ--- 214 (380)
Q Consensus 139 ~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~~~~~~~~~~~--- 214 (380)
....|++|+.+|.++|+++|. ++++|+.|+|||++++- -+.+.++.+|+| |+||+++|++|.|.......
T Consensus 411 q~~wgsIG~svga~lG~a~a~----~e~rvilfiGDGs~qlT--vQeiStmir~gl~~~if~~NN~GYTIE~~IH~~~Yn 484 (561)
T KOG1184|consen 411 QMQWGSIGWSVGATLGYAQAA----PEKRVILFIGDGSFQLT--VQEISTMIRWGLKPIIFLINNGGYTIEVEIHDGPYN 484 (561)
T ss_pred EEEEeeccccchhhhhhhhcc----CCceEEEEecCccceee--HHHHHHHHhcCCCcEEEEEeCCceEEEEeecCCCcc
Confidence 334799999999999999986 56899999999999863 355899999999 69999999999887655441
Q ss_pred -cCCcCHHHHHhhcCceE---EEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016903 215 -FRSDGAVVKGRAYGVRS---IRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 215 -~~~~~~~~~a~a~G~~~---~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~ 267 (380)
..+-++.++.++||..- ....-..-.++.++.+.+... +.++|++|||...
T Consensus 485 ~I~~Wd~~~l~~afg~~~gk~~~~~v~~~~e~~~~~~~~~~~--~~~~i~liEv~l~ 539 (561)
T KOG1184|consen 485 DIQNWDYTALLEAFGAGEGKYETHKVRTEEELVEAIKDATFE--KNDKIRLIEVILP 539 (561)
T ss_pred ccccchHHHHHHhhcCccceeEEeeeccchHHHHHHhhhhhc--ccCceEEEEEecC
Confidence 12247889999998543 222222446677777777632 4678999999873
|
|
| >PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria | Back alignment and domain information |
|---|
Probab=98.87 E-value=7.9e-09 Score=100.60 Aligned_cols=192 Identities=24% Similarity=0.286 Sum_probs=114.2
Q ss_pred ccccccchhhHHHHHHHhcCCC--CcEEEcccccHHH--HHH----cC----------CC---HHHHHHHhhcCCCCCCC
Q 016903 65 SFYLTTSGEEAINIASAAAIKN--DDFVVPQYREPGV--LLW----RG----------FS---MQEFANQCFGNKADYGK 123 (380)
Q Consensus 65 ~~~~~~~G~Ea~~~~~~~~l~~--~D~v~~~yR~~~~--~l~----~G----------~~---~~~~~~e~~g~~~~~~~ 123 (380)
+.|-++-|+-.+.+++...++. .|+++.+--||+. +++ -| .+ +..++.+| . -
T Consensus 48 GHWGt~PGlnfiyahlNrlI~~~~~~~~~v~GpGHg~pai~A~~~LeGs~se~yp~~~~d~~Gl~~L~~~F-S------~ 120 (379)
T PF09364_consen 48 GHWGTSPGLNFIYAHLNRLIRKYDLDMIYVMGPGHGGPAILANLYLEGSYSEFYPDISQDEEGLRRLFRQF-S------F 120 (379)
T ss_dssp S-TTTHHHHHHHHHHHHHHHHHHTB-B--EESSGGGHHHHHHHHHHHSHHHHHSTTS-SSHHHHHHHHHHB-T------S
T ss_pred cccCCCccHHHHHHHHHHHHHhcCCceEEEecCCCCchhhhhhhhhcCccccccCCCCCCHHHHHHHHHhC-C------C
Confidence 5677788888888888777763 4666665566632 121 12 11 22334443 2 2
Q ss_pred CCCCccccCCCCCCccccCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHH-cC-C-C-----
Q 016903 124 GRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAV-TE-A-P----- 195 (380)
Q Consensus 124 G~~~~~H~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~-~~-L-p----- 195 (380)
-.+.++|.+...+|.+.--|-||.+++.|.|+++ .+++.+|+|++|||++.+|.. ..+.+ .+ | |
T Consensus 121 PgGipSH~~p~tPGsIhEGGELGYaLshA~GA~~----DnPdliv~~vvGDGEaETGpl----A~sWh~~kflnP~~dGa 192 (379)
T PF09364_consen 121 PGGIPSHVSPETPGSIHEGGELGYALSHAFGAVF----DNPDLIVACVVGDGEAETGPL----AASWHSNKFLNPATDGA 192 (379)
T ss_dssp TTSB-SSS-TTSTT-S---SSTS-HHHHHHHHHT----T-TT-EEEEEEETTGGGSHHH----HHHGGGGGSS-TTTS-E
T ss_pred CCCCccccCcCCCCccCcCcchhhHHHHHhhccc----CCCCeEEEEEecCCcccCCcc----cccccccceeCcccCce
Confidence 3468899887788888888999999999999875 469999999999999988852 22221 11 2 3
Q ss_pred EEEEEEcCCccccccccc-ccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHH----H-------HhhccC---Cc-
Q 016903 196 VIFICRNNGWAISTPISD-QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAR----E-------MAIGEG---RP- 259 (380)
Q Consensus 196 vi~vv~NN~~~~~~~~~~-~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~----~-------~ar~~~---gP- 259 (380)
|+=|+.=|+|.|+.++-- ..+...+.+.++++|+..+.|+|.|+.++...+..++ + .||+++ +|
T Consensus 193 VLPILhLNG~KI~~pTil~r~~~~eL~~lf~G~Gy~p~~Veg~dp~~~h~~ma~ald~a~~~I~~iq~~Ar~~~~~~~pr 272 (379)
T PF09364_consen 193 VLPILHLNGYKISNPTILARMSDEELEALFRGYGYEPIFVEGDDPADMHQAMAAALDWALEEIRAIQKAARSGNPAYRPR 272 (379)
T ss_dssp EEEEEEE-SBSSSSB-HHHHS-HHHHHHHHHHTTEEEEEEE---HHHHHHHHHHHHHHHHHHHHHHHHHHTT--SS----
T ss_pred eeceEEecCccccCCeEeeecCHHHHHHHHHhCCCeEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 666888899999988742 2345568899999999999999999988877665443 2 233332 23
Q ss_pred -EEEEEEeecCCC
Q 016903 260 -ILIEALTYRVGH 271 (380)
Q Consensus 260 -~lIe~~t~R~~g 271 (380)
-+|.++|-+.++
T Consensus 273 wPmivlRtPKGWt 285 (379)
T PF09364_consen 273 WPMIVLRTPKGWT 285 (379)
T ss_dssp EEEEEEE--TTTT
T ss_pred CcEEEEECCcccC
Confidence 366777766653
|
PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A. |
| >COG3962 Acetolactate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.71 E-value=7.3e-08 Score=96.06 Aligned_cols=116 Identities=18% Similarity=0.254 Sum_probs=90.3
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEE-cCCcccccccc-------
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICR-NNGWAISTPIS------- 212 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~-NN~~~~~~~~~------- 212 (380)
..+.||+-+.-++|+ |+..+++-|++++||||+.+ .+.+|.++..+++.+++|+. |-+|+.....+
T Consensus 442 gfSCMGYEiaG~lG~----K~a~pdreV~vmVGDGSymM--lnSEL~Tsv~~g~Ki~Vvl~DN~GyGCIn~LQm~~Gg~s 515 (617)
T COG3962 442 GFSCMGYEIAGGLGA----KAAEPDREVYVMVGDGSYMM--LNSELATSVMLGKKIIVVLLDNRGYGCINRLQMATGGAS 515 (617)
T ss_pred ccccccccccccccc----ccCCCCCeEEEEEcccchhh--hhHHHHHHHHcCCeEEEEEECCCCcchhhhhhhhcCcch
Confidence 357888888777776 45678999999999999974 77889999999998666555 55675432111
Q ss_pred -----------cccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 213 -----------DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 213 -----------~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
......||+..|++||+++++|. ++.++..++++|.+ ..+++||+++|..
T Consensus 516 f~~~~r~~~~e~~~~~vDfA~~A~s~Ga~~~kv~--~i~eL~aAL~~Ak~----~~~ttvi~I~t~P 576 (617)
T COG3962 516 FNNLLRDTDHEEEILQVDFAAHAESYGAKAYKVG--TIEELEAALADAKA----SDRTTVIVIDTDP 576 (617)
T ss_pred hhhhhhhhcccCCCCcccHHHHHhhcCceeEecC--CHHHHHHHHHHHHh----CCCCEEEEEecCC
Confidence 22345689999999999999998 89888887777664 6899999999854
|
|
| >COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.5e-06 Score=81.64 Aligned_cols=148 Identities=18% Similarity=0.192 Sum_probs=100.1
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccc-cCcchHHHHHHHHHHcCCCEEEEEEcCC-cccccccccc----
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGG-TSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISDQ---- 214 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~-~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~~~~---- 214 (380)
..+.-|-..+.|.|+.+|. ++..||++.|||. +..|. ..+--|.+.+.+|++||.||. |+.++-+...
T Consensus 68 ~hs~~gra~a~atGik~A~----~~l~Viv~gGDG~~~dIG~--~~l~h~~~Rn~dit~iv~DNevYgnTggQ~S~tTp~ 141 (294)
T COG1013 68 VHSLHGRAAAVATGIKLAN----PALSVIVIGGDGDAYDIGG--NHLIHALRRNHDITYIVVDNEVYGNTGGQASPTTPK 141 (294)
T ss_pred eeeccCcchhhHHHHHHhc----cCCeEEEEecchhHhhhhh--HHHHHHHHcCCCeEEEEECCeecccCCCccCCCCCC
Confidence 3567788899999998886 4568999999995 56664 347778889999999998886 4443221111
Q ss_pred ------------c-CCcCHHHHHhhcCceEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCC
Q 016903 215 ------------F-RSDGAVVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTK 280 (380)
Q Consensus 215 ------------~-~~~~~~~~a~a~G~~~~-~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~ 280 (380)
. ...|+..++.++|...+ ++.--++..+...+++|+++ +||.||++.+- -++.-+. ..
T Consensus 142 G~~t~t~p~Gk~~~~k~d~~~la~a~G~~yVAr~~~~~~~~l~~~i~kA~~~----~Gps~I~v~sP---C~t~~~~-~~ 213 (294)
T COG1013 142 GAKTKTTPYGKRSEKKKDPGLLAMAAGATYVARASVGDPKDLTEKIKKAAEH----KGPSFIDVLSP---CPTGNGR-NT 213 (294)
T ss_pred CceeeecCCCCCcCCCCCHHHHHHHCCCCeEEEecccCHHHHHHHHHHHHhc----cCCeEEEEecC---CCCCCCc-cc
Confidence 1 22378899999998755 46656799999999999975 69999998752 1222222 22
Q ss_pred CCChhhHHHHH-hcCChHHHHHH
Q 016903 281 YRPVDEIEWWR-TTQDPVTRFRK 302 (380)
Q Consensus 281 Yr~~~e~~~~~-~~~DPi~~~~~ 302 (380)
+...++...|- ..-+|+-++..
T Consensus 214 ~~~~~~~~~ave~g~~pl~~~~~ 236 (294)
T COG1013 214 MKTIEEAKLAVETGYWPLYRYEP 236 (294)
T ss_pred chHHHHHHHHHhcCCceeeeccC
Confidence 34444444442 24566666554
|
|
| >COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.14 E-value=6.5e-06 Score=85.43 Aligned_cols=119 Identities=21% Similarity=0.187 Sum_probs=88.0
Q ss_pred CccccCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCc-ccccccccc-
Q 016903 137 NYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGW-AISTPISDQ- 214 (380)
Q Consensus 137 ~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~-~~~~~~~~~- 214 (380)
+....+-.+|.++++|-|++++. .+++|+++|||.|..... .+|..|...+.|++++|-+|.+ ++++.+...
T Consensus 422 ~~~d~t~~mGssig~a~g~~~~~-----~k~~va~iGDsTF~HsGi-~~l~nAV~n~~~~~~vvLdN~~tAMTGgQp~pg 495 (640)
T COG4231 422 NTVDTTTMMGSSIGIAGGLSFAS-----TKKIVAVIGDSTFFHSGI-LALINAVYNKANILVVVLDNRTTAMTGGQPHPG 495 (640)
T ss_pred chhhhhhhccchhhhcccccccc-----CCceEEEeccccccccCc-HHHHHHHhcCCCeEEEEEeccchhccCCCCCCC
Confidence 33444567888888888888764 378999999999954333 3477888889998888877776 455443322
Q ss_pred ---------cCCcCHHHHHhhcCceEEE-EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 016903 215 ---------FRSDGAVVKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEAL 265 (380)
Q Consensus 215 ---------~~~~~~~~~a~a~G~~~~~-VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~ 265 (380)
.....+.+..++.|+..+. ||-.|..++.+++++|++ ..+|.+|.++
T Consensus 496 ~~~~~~g~~~~~i~iee~~r~~Gv~~v~~vdp~~~~~~~~~~keale----~~gpsViiak 552 (640)
T COG4231 496 TGVAAEGTKSTAIVIEEVVRAMGVEDVETVDPYDVKELSEAIKEALE----VPGPSVIIAK 552 (640)
T ss_pred cccccCCCccceeEhhHhhhhcCceeeeccCCcchHHHHHHHHHHhc----CCCceEEEEc
Confidence 1234678899999998776 666899999999999887 4789988553
|
|
| >COG3957 Phosphoketolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.1e-05 Score=84.37 Aligned_cols=168 Identities=20% Similarity=0.212 Sum_probs=114.8
Q ss_pred cccccccchhhHHHHHHHhcCCCC--cEEEcccccHHHH------HHcCC----------C---HHHHHHHhhcCCCCCC
Q 016903 64 ISFYLTTSGEEAINIASAAAIKND--DFVVPQYREPGVL------LWRGF----------S---MQEFANQCFGNKADYG 122 (380)
Q Consensus 64 i~~~~~~~G~Ea~~~~~~~~l~~~--D~v~~~yR~~~~~------l~~G~----------~---~~~~~~e~~g~~~~~~ 122 (380)
++.+-++.|+--+.++....++.. ++++..--||+.. +.-|. + +.+++.+|.
T Consensus 60 lGHwGt~pg~s~~Y~H~nr~i~~~d~~~~yv~GpGHg~~~~~~~~yLeGtys~~yp~~s~d~~Gm~rL~~qFs------- 132 (793)
T COG3957 60 LGHWGTQPGLSFIYAHLNRLISKYDANMAYVMGPGHGGPAIVANTYLEGTYSEMYPDISQDEEGLNRLFKQFS------- 132 (793)
T ss_pred cccccCCCCchhhhhhhhHHHHhhCcceEEEecCCCCcceeeeccccCCccccccccccccHHHHHHHHHhcc-------
Confidence 466777788888887777766654 3344333444211 11221 1 223344443
Q ss_pred CCCCCccccCCCCCCccccCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHc--CC------
Q 016903 123 KGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT--EA------ 194 (380)
Q Consensus 123 ~G~~~~~H~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~--~L------ 194 (380)
--.|.++|.....+|.+...|.||+++..|.|+|+ ..++.++.|++|||+..+|. +.++..- -+
T Consensus 133 ~PgGi~SH~~petPGsIhEGGeLGy~l~ha~gAa~----d~Pdli~~~vvGDGeaetgp----latsWhs~kf~np~~dG 204 (793)
T COG3957 133 FPGGIGSHVAPETPGSIHEGGELGYALSHAYGAAF----DNPDLIVACVVGDGEAETGP----LATSWHSNKFLNPARDG 204 (793)
T ss_pred CCCCcccccCCCCCCccCcCcchhHHHHHHHHhhc----CCCCcEEEEEecccccccCc----cccccccccccCccccC
Confidence 23458889887788999889999999999999875 46899999999999776664 3333321 11
Q ss_pred CEEEEEEcCCcccccccccc-cCCcCHHHHHhhcCceEEEEeCCCHHHHHHHH
Q 016903 195 PVIFICRNNGWAISTPISDQ-FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAV 246 (380)
Q Consensus 195 pvi~vv~NN~~~~~~~~~~~-~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~ 246 (380)
.++=|..=|+|.|+-++.-. .+...+...+++||++-+.|+|+|+.++...+
T Consensus 205 avLPIL~lNGykI~npT~lar~s~~el~~~f~G~Gy~p~~veg~d~~d~hq~m 257 (793)
T COG3957 205 AVLPILHLNGYKIENPTVLARISDEELKALFEGYGYEPVFVEGADPADMHQLM 257 (793)
T ss_pred ceeeEEEecceeccCceeeeecChHHHHHHHhhCCCceeEecCCChHHhhhhH
Confidence 37778888999999877533 24456889999999999999999998844433
|
|
| >COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.78 E-value=8.1e-05 Score=76.51 Aligned_cols=108 Identities=22% Similarity=0.190 Sum_probs=75.8
Q ss_pred chHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCC-EEEEEEcCCcccccc--cc-------ccc--
Q 016903 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTP--IS-------DQF-- 215 (380)
Q Consensus 148 ~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi~vv~NN~~~~~~~--~~-------~~~-- 215 (380)
.++-|+|++.|. .++++.++||=|+-.-. .+|-+......| +|+|++||+-+|... +. +.+
T Consensus 427 ~vSTA~Gi~~a~-----~~ptv~liGDLS~lhD~--NgLl~~k~~~~~ltIvv~NNnGGgIF~~Lp~~~~~~~fe~~F~t 499 (566)
T COG1165 427 TVSTALGIARAT-----QKPTVALIGDLSFLHDL--NGLLLLKKVPQPLTIVVVNNNGGGIFSLLPQAQSEPVFERLFGT 499 (566)
T ss_pred hHHHHhhhhhhc-----CCceEEEEechhhhhcc--chHhhcCCCCCCeEEEEEeCCCceeeeeccCCCCcchHHHhcCC
Confidence 377788988874 45699999999993211 124444555567 556667777666421 11 111
Q ss_pred -CCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 216 -RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 216 -~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
..-||+..|+.||+...+++ ...++..++..+.. ..|-.+||++|.|
T Consensus 500 Ph~ldF~~la~~y~l~y~~~~--s~~~l~~~~~~~~~----~~g~~viEvkt~r 547 (566)
T COG1165 500 PHGLDFAHLAATYGLEYHRPQ--SWDELGEALDQAWR----RSGTTVIEVKTDR 547 (566)
T ss_pred CCCCCHHHHHHHhCccccccC--cHHHHHHHHhhhcc----CCCcEEEEEecCh
Confidence 13489999999999999998 78888888887764 3678999999976
|
|
| >cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0012 Score=65.45 Aligned_cols=95 Identities=16% Similarity=0.177 Sum_probs=69.3
Q ss_pred CeeEEEeCcccc-CcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccc-------c---------cccCCcCHHHHHhhc
Q 016903 166 ACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI-------S---------DQFRSDGAVVKGRAY 227 (380)
Q Consensus 166 ~~vv~~~GDG~~-~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~-------~---------~~~~~~~~~~~a~a~ 227 (380)
..||++.|||.. .-|. ..+.-|...+.+|++||-||. |+.++-+ . ......|+..++.++
T Consensus 152 ~~v~v~gGDG~~ydIG~--~~l~ha~~r~~ni~~iv~DNe~Y~nTGgQ~S~tTp~Ga~t~tsp~Gk~~~kkd~~~ia~a~ 229 (365)
T cd03377 152 KSVWIIGGDGWAYDIGY--GGLDHVLASGENVNILVLDTEVYSNTGGQASKATPLGAVAKFAAAGKRTGKKDLGMIAMSY 229 (365)
T ss_pred cceEEEecchhhhccch--hhHHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCcCccCCCCCCCCCcCHHHHHHHc
Confidence 589999999965 6563 346667777889888888775 5543211 1 112235888999999
Q ss_pred CceEE-EEe-CCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 228 GVRSI-RVD-GNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 228 G~~~~-~Vd-G~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
|.+.+ ++. |.++.++..++++|.++ +||.+|++.+
T Consensus 230 g~~YVA~~s~~~~~~~~~~~i~eA~~~----~Gps~I~v~s 266 (365)
T cd03377 230 GNVYVAQIALGANDNQTLKAFREAEAY----DGPSLIIAYS 266 (365)
T ss_pred CCCEEEEEecccCHHHHHHHHHHHhcC----CCCEEEEEEc
Confidence 98765 454 45899999999999874 8999999876
|
This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra |
| >cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.011 Score=50.93 Aligned_cols=104 Identities=19% Similarity=0.163 Sum_probs=68.6
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEe-CccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhc
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYF-GDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 227 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~-GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~ 227 (380)
..+|.|.+++. . ..++++. |.|..+ ..+++..|...++|+|+|+...+..... .......+....++.+
T Consensus 48 ~~~A~G~a~~~----~-~~v~~~~~gpg~~~---~~~~l~~a~~~~~Pvl~i~~~~~~~~~~--~~~~q~~~~~~~~~~~ 117 (154)
T cd06586 48 AGAAAGYARAG----G-PPVVIVTSGTGLLN---AINGLADAAAEHLPVVFLIGARGISAQA--KQTFQSMFDLGMYRSI 117 (154)
T ss_pred HHHHHHHHHhh----C-CEEEEEcCCCcHHH---HHHHHHHHHhcCCCEEEEeCCCChhhhc--cCcccccCHHHHHHHh
Confidence 55677776652 3 3333434 888764 5577888888899999999766543211 1111223445666766
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016903 228 GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 228 G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~ 264 (380)
..-.+.+. ++.+..+.+.+|+..+....||++|++
T Consensus 118 ~~~~~~~~--~~~~~~~~~~~a~~~a~~~~gPv~l~i 152 (154)
T cd06586 118 PEANISSP--SPAELPAGIDHAIRTAYASQGPVVVRL 152 (154)
T ss_pred hheEEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEc
Confidence 65555555 778888888888887777789999976
|
Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca |
| >PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.003 Score=71.27 Aligned_cols=115 Identities=15% Similarity=0.023 Sum_probs=76.4
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCc-ccccccccccCCcC
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGW-AISTPISDQFRSDG 219 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~-~~~~~~~~~~~~~~ 219 (380)
++..||+..+.++|.+.+. .++.+|+++|||.|...... +|.-|...+.|++++|-+|.. ++++.+...- ..+
T Consensus 466 ~~~~MG~~g~~~~G~a~~~----~~~~v~a~iGDgTf~HSG~~-al~~AV~~~~nit~~IL~N~~tAMTGgQp~~g-~i~ 539 (1159)
T PRK13030 466 GLTQMGGEGVDWIGHAPFT----ETKHVFQNLGDGTYFHSGSL-AIRQAVAAGANITYKILYNDAVAMTGGQPVDG-SIS 539 (1159)
T ss_pred eeeccCccchhhceecccc----CCCCEEEEeccchhhhcCHH-HHHHHHhcCCCeEEEEEeCCcccccCCCCCCC-CCC
Confidence 4568898899999988763 34679999999999533333 677788888999888877764 6665443321 234
Q ss_pred HHH---HHhhcCceEEEEeCCCHHH----------------HHHHHHHHHHHhhccCCcEEEEE
Q 016903 220 AVV---KGRAYGVRSIRVDGNDALA----------------IYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 220 ~~~---~a~a~G~~~~~VdG~D~~a----------------v~~a~~~a~~~ar~~~gP~lIe~ 264 (380)
+.+ ..++.|++-+.|--.|+.. ..+++++++ |+.+||++|..
T Consensus 540 v~~i~~~~~a~Gv~~v~vvsddp~~~~~~~~~~~~~v~~r~~l~~vq~~l---~~~~GvsViI~ 600 (1159)
T PRK13030 540 VPQIARQVEAEGVSRIVVVSDEPEKYRGHHLPAGVTVHHRDELDAVQREL---RETPGVTVLIY 600 (1159)
T ss_pred HHHHHHHHHhCCCcEEEEecCChhhccccccCCCcccccHHHHHHHHHHH---hcCCCcEEEEE
Confidence 444 7789999877753334333 334444444 34678888853
|
|
| >PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0032 Score=70.93 Aligned_cols=120 Identities=12% Similarity=0.046 Sum_probs=80.3
Q ss_pred ccCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccccc--ccC
Q 016903 140 TVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD--QFR 216 (380)
Q Consensus 140 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~~~--~~~ 216 (380)
.++..||+..+.++|.+.+. .++.+|+++|||.|..... -+|.-|...+.|++++|-+|. -++++.+.. ..+
T Consensus 478 ~~~~~MG~eg~~~~G~a~f~----~~~hv~a~iGDgTffHSG~-~al~~AV~~~~nit~~IL~N~~vAMTGgQ~~~g~~~ 552 (1165)
T PRK09193 478 STFTQMGGEGVPWIGQAPFT----DEKHVFQNLGDGTYFHSGL-LAIRAAVAAGVNITYKILYNDAVAMTGGQPVDGGLS 552 (1165)
T ss_pred CeeeccCCcchhhceecccc----CCCcEEEEeccccchhcCH-HHHHHHHhcCCCeEEEEEeCCcccccCCCCCCCCcc
Confidence 34578899999999987652 3467999999999953322 347777888899888776665 567665432 234
Q ss_pred CcCHHHHHhhcCceEEEEeCCCHHHHHHH--------------HHHHHHHhhccCCcEEEEE
Q 016903 217 SDGAVVKGRAYGVRSIRVDGNDALAIYSA--------------VHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 217 ~~~~~~~a~a~G~~~~~VdG~D~~av~~a--------------~~~a~~~ar~~~gP~lIe~ 264 (380)
..++....++.|++-+.|--.|+...... ++...+..|+.+|+++|..
T Consensus 553 ~~~i~~~~~a~GV~~v~vv~ddp~~~~~~~~~~~~v~~~~R~~l~~vq~~lr~~~GvsViI~ 614 (1165)
T PRK09193 553 VPQITRQLAAEGVKRIVVVTDEPEKYDGVARLAPGVTVHHRDELDAVQRELREIPGVTVLIY 614 (1165)
T ss_pred hhhHHHHHHhCCCCEEEEeCCChhhhhhccccCcCcccccHHHHHHHHHHHhcCCCcEEEEE
Confidence 56788999999998776543455444322 3333333345688888754
|
|
| >cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.012 Score=52.09 Aligned_cols=106 Identities=16% Similarity=0.039 Sum_probs=75.8
Q ss_pred HHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCc
Q 016903 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|.|.|.+. +.-.++++..|=|.++ ..-++..|...++|||+|.-+........ ......|..+.++.+--
T Consensus 52 ~mA~gyar~t---g~~~v~~~t~GpG~~n---~~~~l~~A~~~~~Pvl~I~g~~~~~~~~~--~~~q~~d~~~~~~~~tk 123 (164)
T cd07039 52 FAASAEAKLT---GKLGVCLGSSGPGAIH---LLNGLYDAKRDRAPVLAIAGQVPTDELGT--DYFQEVDLLALFKDVAV 123 (164)
T ss_pred HHHHHHHHHh---CCCEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEecCCcccccCC--CCCcccCHHHHHHHhhc
Confidence 4566666553 3445666667888876 44567788889999999997655432111 11222366778888877
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 016903 230 RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEAL 265 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~ 265 (380)
...+++ ++.++.+++++|+..++...||+.|++-
T Consensus 124 ~~~~v~--~~~~~~~~i~~A~~~a~~~~GPV~l~iP 157 (164)
T cd07039 124 YNETVT--SPEQLPELLDRAIRTAIAKRGVAVLILP 157 (164)
T ss_pred EEEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 788888 8899999999999888888899999874
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ |
| >cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.013 Score=50.90 Aligned_cols=107 Identities=21% Similarity=0.148 Sum_probs=70.7
Q ss_pred chHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhc
Q 016903 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 227 (380)
Q Consensus 148 ~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~ 227 (380)
...+|.|.+++. +.-.++++..|=|.++ ...++..|...++|+|+|.-+.......... ....+..+.++.+
T Consensus 46 A~~~A~g~~~~~---~~~~v~~~~~gpG~~n---~~~~l~~A~~~~~Pll~i~~~~~~~~~~~~~--~q~~d~~~~~~~~ 117 (155)
T cd07035 46 AVGMADGYARAT---GKPGVVLVTSGPGLTN---AVTGLANAYLDSIPLLVITGQRPTAGEGRGA--FQEIDQVALFRPI 117 (155)
T ss_pred HHHHHHHHHHHH---CCCEEEEEcCCCcHHH---HHHHHHHHHhhCCCEEEEeCCCccccccCCc--ccccCHHHHHHHH
Confidence 355666766653 1122333333666554 5678888999999999998765533221111 1123555666666
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEE
Q 016903 228 GVRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEA 264 (380)
Q Consensus 228 G~~~~~VdG~D~~av~~a~~~a~~~ar~~-~gP~lIe~ 264 (380)
--...+++ +++++...+.+|+..+... ++|+.|++
T Consensus 118 ~~~~~~i~--~~~~~~~~i~~A~~~a~~~~~gPv~l~i 153 (155)
T cd07035 118 TKWAYRVT--SPEEIPEALRRAFRIALSGRPGPVALDL 153 (155)
T ss_pred hceEEEcC--CHHHHHHHHHHHHHHhcCCCCCcEEEEe
Confidence 55577776 8899999999999988877 78999986
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio |
| >cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.015 Score=50.92 Aligned_cols=106 Identities=16% Similarity=0.103 Sum_probs=67.8
Q ss_pred chHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhc
Q 016903 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 227 (380)
Q Consensus 148 ~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~ 227 (380)
...+|.|.+++ +. +.+++..|-|..+ ....|..|...+.|+|+|+-+................+....++.
T Consensus 53 A~~~A~g~~r~----~~-~v~~~~~gpG~~n---~~~~l~~a~~~~~P~v~i~g~~~~~~~~~~~~~~~~~~~~~~~~~- 123 (160)
T cd07034 53 AAEAAIGASAA----GA-RAMTATSGPGLNL---MAEALYLAAGAELPLVIVVAQRPGPSTGLPKPDQSDLMAARYGGH- 123 (160)
T ss_pred HHHHHHHHHhh----CC-cEEEeeCcchHHH---HHHHHHHHHhCCCCEEEEEeeCCCCCCCCCCcCcHHHHHHHhCCC-
Confidence 34555566553 22 2667777888876 456688888888999999976543221110000100112223333
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016903 228 GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 228 G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~ 264 (380)
.+...++. +++++.+.+++|+..++.+++|++|..
T Consensus 124 ~~~~~~~~--~~~~~~~~~~~A~~~a~~~~~Pv~l~~ 158 (160)
T cd07034 124 PWPVLAPS--SVQEAFDLALEAFELAEKYRLPVIVLS 158 (160)
T ss_pred CEEEEeCC--CHHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence 36666666 899999999999999999889999864
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th |
| >PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.015 Score=51.69 Aligned_cols=110 Identities=21% Similarity=0.094 Sum_probs=75.1
Q ss_pred chHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhc
Q 016903 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 227 (380)
Q Consensus 148 ~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~ 227 (380)
...+|.|.+++. +.-.++++..|=|.++ ..-+|..|...++|+|+|+-.-..........+ ...+....++.+
T Consensus 51 A~~~A~g~ar~~---g~~~v~~~~~GpG~~n---~~~~l~~A~~~~~Pvl~i~g~~~~~~~~~~~~q-~~~d~~~~~~~~ 123 (172)
T PF02776_consen 51 AAFMADGYARAT---GRPGVVIVTSGPGATN---ALTGLANAYADRIPVLVITGQRPSAGEGRGAFQ-QEIDQQSLFRPV 123 (172)
T ss_dssp HHHHHHHHHHHH---SSEEEEEEETTHHHHT---THHHHHHHHHTT-EEEEEEEESSGGGTTTTSTT-SSTHHHHHHGGG
T ss_pred hHHHHHHHHHhh---ccceEEEeecccchHH---HHHHHhhcccceeeEEEEecccchhhhcccccc-cchhhcchhccc
Confidence 355677777653 2333455555666665 345566788889999999987765443311111 123667788888
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHh-hccCCcEEEEEEe
Q 016903 228 GVRSIRVDGNDALAIYSAVHAAREMA-IGEGRPILIEALT 266 (380)
Q Consensus 228 G~~~~~VdG~D~~av~~a~~~a~~~a-r~~~gP~lIe~~t 266 (380)
.-...++. +++++..++++|+..+ ....+|+.|++..
T Consensus 124 ~k~~~~v~--~~~~~~~~~~~A~~~a~~~~~gPv~l~ip~ 161 (172)
T PF02776_consen 124 TKWSYRVT--SPDDLPEALDRAFRAATSGRPGPVYLEIPQ 161 (172)
T ss_dssp SSEEEEEC--SGGGHHHHHHHHHHHHHHCSTSEEEEEEEH
T ss_pred cchhcccC--CHHHHHHHHHHHHHHhccCCCccEEEEcCh
Confidence 88888887 8888999999999888 6778999999853
|
It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B .... |
| >TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.035 Score=48.98 Aligned_cols=107 Identities=16% Similarity=0.059 Sum_probs=70.5
Q ss_pred ccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHH-HcCCCEEEEEEcCCc-ccccccccccCCcCHH-H
Q 016903 146 ATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSA-VTEAPVIFICRNNGW-AISTPISDQFRSDGAV-V 222 (380)
Q Consensus 146 G~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~-~~~Lpvi~vv~NN~~-~~~~~~~~~~~~~~~~-~ 222 (380)
+.+..+|.|..++ .++.++|+.+=|-. ...-+|..|. ..++|+|+|+-.-+. +-..+. +.....+. .
T Consensus 44 e~aa~~aAg~~~~-----~~~~~v~~~~sG~g---n~~~~l~~a~~~~~~Pvl~i~g~rg~~~~~~~~--q~~~g~~~~~ 113 (157)
T TIGR03845 44 EEGVGICAGAYLA-----GKKPAILMQSSGLG---NSINALASLNKTYGIPLPILASWRGVYKEKIPA--QIPMGRATPK 113 (157)
T ss_pred HHHHHHHHHHHHh-----cCCcEEEEeCCcHH---HHHHHHHHHHHcCCCCEEEEEeccCCCCCCCcc--ccchhhhhHH
Confidence 4455666666643 45567888877733 4566777888 889999999954433 111111 11111111 2
Q ss_pred HHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 016903 223 KGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEAL 265 (380)
Q Consensus 223 ~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~ 265 (380)
.....+++...++ +++++ .++.+|+..+.++++|+.|.+.
T Consensus 114 ~l~~~~i~~~~i~--~~e~~-~~i~~A~~~a~~~~gPv~il~~ 153 (157)
T TIGR03845 114 LLDTLGIPYTIPR--EPEEA-KLIEKAISDAYENSRPVAALLD 153 (157)
T ss_pred HHHHcCCCeEEeC--CHHHH-HHHHHHHHHHHhCCCCEEEEEe
Confidence 3355777888887 79999 9999999999999999998764
|
This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363). |
| >cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.038 Score=48.84 Aligned_cols=109 Identities=18% Similarity=0.135 Sum_probs=72.8
Q ss_pred cchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccc---ccccc---CCcCH
Q 016903 147 TQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTP---ISDQF---RSDGA 220 (380)
Q Consensus 147 ~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~---~~~~~---~~~~~ 220 (380)
...-+|-|.+.+. .-.++++..|=|.++ ..-++..|...+.|||+|+-+........ ..... ...+.
T Consensus 46 ~A~~mA~gyar~t----~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~d~ 118 (162)
T cd07038 46 NAGYAADGYARVK----GLGALVTTYGVGELS---ALNGIAGAYAEHVPVVHIVGAPSTKAQASGLLLHHTLGDGDFDVF 118 (162)
T ss_pred HHHHHHHHHHHhh----CCEEEEEcCCccHHH---HHHHHHHHHHcCCCEEEEecCCCccccccccceeecccccchHHH
Confidence 3345566776653 133445555777776 44567788888999999997654321111 00001 01245
Q ss_pred HHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016903 221 VVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 221 ~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~ 264 (380)
.+.++.+.-...+|. +++++...+++|+..+..++||+.|++
T Consensus 119 ~~~~~~~tk~~~~v~--~~~~i~~~v~~A~~~a~s~~gPV~l~i 160 (162)
T cd07038 119 LKMFEEITCAAARLT--DPENAAEEIDRVLRTALRESRPVYIEI 160 (162)
T ss_pred HHHHHhheeEEEEeC--CHHHHHHHHHHHHHHHHHCCCCEEEEc
Confidence 677777777777887 888999999999999988889999986
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many |
| >TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.034 Score=63.60 Aligned_cols=96 Identities=16% Similarity=0.206 Sum_probs=69.7
Q ss_pred CeeEEEeCcccc-CcchHHHHHHHHHHcCCCEEEEEEcCC-ccccc-------ccc---------cccCCcCHHHHHhhc
Q 016903 166 ACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNNG-WAIST-------PIS---------DQFRSDGAVVKGRAY 227 (380)
Q Consensus 166 ~~vv~~~GDG~~-~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~-------~~~---------~~~~~~~~~~~a~a~ 227 (380)
..|+++.|||.. .-|. ..+.-+...+.+|.+||-||. |+.++ |.. ......|+..++.++
T Consensus 952 ~sv~~~~GDG~~~diG~--~~l~~~~~r~~~v~~i~~dne~Y~nTggQ~S~~tp~g~~t~~~~~g~~~~kkd~~~~a~~~ 1029 (1165)
T TIGR02176 952 KSVWIIGGDGWAYDIGY--GGLDHVLASGKDVNVLVMDTEVYSNTGGQSSKATPTGAIAKFAAAGKRTSKKDLGMMAMTY 1029 (1165)
T ss_pred ceeEEEecchhhhccCc--cchHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCccccCCCCCCCCCcCHHHHHHHC
Confidence 479999999965 5553 346667778899888887775 54432 211 112345788999999
Q ss_pred CceEE-EEe-CCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016903 228 GVRSI-RVD-GNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 228 G~~~~-~Vd-G~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~ 267 (380)
|...+ ++. |.++.++..++++|..+ +||.+|++.+.
T Consensus 1030 g~~yvA~~~~~~~~~~~~~~~~~A~~~----~G~s~i~~~~p 1067 (1165)
T TIGR02176 1030 GYVYVAQVSMGANMQQTLKAFREAEAY----DGPSIVIAYSP 1067 (1165)
T ss_pred CCCEEEEEecccCHHHHHHHHHHHHcC----CCCEEEEEECC
Confidence 98755 465 66899999999999864 89999998773
|
This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase. |
| >PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.018 Score=65.14 Aligned_cols=119 Identities=13% Similarity=0.027 Sum_probs=75.7
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccccc--ccCC
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD--QFRS 217 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~~~--~~~~ 217 (380)
++..||+.....+|.+.+. .++.+|+++|||.|..... -+|.-|...+.|++++|-+|. -++++.+.. ..+.
T Consensus 493 ~~~~MGgeg~~~~G~a~f~----~~~hv~aniGDgTffHSG~-~alr~AV~~~~nit~kIL~N~avAMTGgQp~~G~~~v 567 (1186)
T PRK13029 493 GFSQMGGEGVAWIGQMPFS----RRRHVFQNLGDGTYFHSGL-LAIRQAIAAGVNITYKILYNDAVAMTGGQPVDGVLTV 567 (1186)
T ss_pred eeeccCcchhhheeecccC----CCCCEEEEeccccchhcCH-HHHHHHHhcCCCEEEEEEeCcchhccCCCCCCCcCCH
Confidence 4568888888888887652 3467999999999953322 347778888899888776665 466654432 2223
Q ss_pred cCHHHHHhhcCceEEEEeCCCHHHHH--------------HHHHHHHHHhhccCCcEEEEE
Q 016903 218 DGAVVKGRAYGVRSIRVDGNDALAIY--------------SAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 218 ~~~~~~a~a~G~~~~~VdG~D~~av~--------------~a~~~a~~~ar~~~gP~lIe~ 264 (380)
+.++...++.|++-+.|--.|+.... +.+....+..|+.+|+++|..
T Consensus 568 ~~i~~~~~a~GV~~v~vv~d~p~~~~~~~~~~~gv~~~~R~~l~~vq~~lr~~~GvsViI~ 628 (1186)
T PRK13029 568 PQIARQVHAEGVRRIVVVTDEPGKYRGVARLPAGVTVHHRDELDAVQRELREVPGVSVLIY 628 (1186)
T ss_pred HHHHHHHHhCCccEEEEeCCCccccccccccCCccccccHHHHHHHHHHHhcCCCcEEEEE
Confidence 34445779999987765322343332 233333333345678887743
|
|
| >cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.057 Score=47.87 Aligned_cols=107 Identities=13% Similarity=0.063 Sum_probs=66.2
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|-|.|.+. +.-.++++..|=|.++ ..-++..|...+.|+|+|+-+-....... ......|....++.+-
T Consensus 48 ~~mAdgyar~s---g~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~--~~~q~~d~~~l~~~vt 119 (162)
T cd07037 48 AFFALGLAKAS---GRPVAVVCTSGTAVAN---LLPAVVEAYYSGVPLLVLTADRPPELRGT--GANQTIDQVGLFGDYV 119 (162)
T ss_pred HHHHHHHHHhh---CCCEEEEECCchHHHH---HhHHHHHHHhcCCCEEEEECCCCHHhcCC--CCCcccchhhhcccee
Confidence 44566766543 3444556666777776 34567778888999999997544322111 1111234445566555
Q ss_pred ceEEEEeCCCHHH------HHHHHHHHHHHhhccC-CcEEEEEE
Q 016903 229 VRSIRVDGNDALA------IYSAVHAAREMAIGEG-RPILIEAL 265 (380)
Q Consensus 229 ~~~~~VdG~D~~a------v~~a~~~a~~~ar~~~-gP~lIe~~ 265 (380)
-...+|. ++++ +...+++|+..++.+. ||++|++-
T Consensus 120 k~~~~v~--~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 161 (162)
T cd07037 120 RWSVDLP--PPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNLP 161 (162)
T ss_pred eEEEecC--CcccchhHHHHHHHHHHHHHHHhCCCCCCEEEecc
Confidence 4555664 4444 6777788887777764 89999873
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim |
| >COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.19 Score=53.23 Aligned_cols=108 Identities=19% Similarity=0.160 Sum_probs=78.2
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|-|.|.+ .++-.+|++..|=|+++ ..-.|..|..-..|+|.|.-.-.... ...+.+...|...+++.+-
T Consensus 52 a~mAdgyar~---TGkpgV~~~tsGPGatN---~~tgla~A~~d~~Pll~itGqv~~~~--~g~~afQe~D~~~l~~p~t 123 (550)
T COG0028 52 AFAADGYARA---TGKPGVCLVTSGPGATN---LLTGLADAYMDSVPLLAITGQVPTSL--IGTDAFQEVDQVGLFRPIT 123 (550)
T ss_pred HHHHHHHHHH---cCCCEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEeCCccccc--cCcchhhhcchhhHhhhhh
Confidence 4456666544 46678899999999997 45668888888999999886221111 1111222236777777777
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~-gP~lIe~~t 266 (380)
-...+|. +++++...+++|+..|.+++ ||++|++-.
T Consensus 124 k~~~~v~--~~~~ip~~i~~Af~~A~sgrpGpv~i~iP~ 160 (550)
T COG0028 124 KYNFEVR--SPEDIPEVVARAFRIALSGRPGPVVVDLPK 160 (550)
T ss_pred eeEEEeC--CHHHHHHHHHHHHHHHhcCCCceEEEEcCh
Confidence 7777887 99999999999999999887 999998754
|
|
| >TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.2 Score=52.81 Aligned_cols=110 Identities=15% Similarity=0.116 Sum_probs=75.0
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|-|.|.+. +.-.++++..|=|.++ ..-++..|..-++|||+|+-.............+...|....++.+-
T Consensus 53 ~~mAdgyar~t---g~~gv~~~t~GPG~~N---~~~gia~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~vt 126 (554)
T TIGR03254 53 GYAAAAAGFLT---QKPGVCLTVSAPGFLN---GLTALANATTNCFPMIMISGSSERHIVDLQQGDYEEMDQLAAAKPFA 126 (554)
T ss_pred HHHHHHHHHHh---CCCEEEEEccCccHHh---HHHHHHHHHhcCCCEEEEEccCCccccccCCCCcchhhHHHHhhhhh
Confidence 34566666553 3445667777999887 34567788888999999997554331110111122235667788777
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~-~gP~lIe~~t 266 (380)
-...+|+ ++.++.+.+.+|+..+..+ .||+.|++..
T Consensus 127 k~~~~v~--~~~~~~~~i~rA~~~A~~~~pGPV~l~iP~ 163 (554)
T TIGR03254 127 KAAYRVL--RAEDIGIGIARAIRTAVSGRPGGVYLDLPA 163 (554)
T ss_pred eeEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCH
Confidence 7788888 8999999999999888775 4899998764
|
In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase. |
| >PRK08611 pyruvate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.23 Score=52.74 Aligned_cols=108 Identities=14% Similarity=0.043 Sum_probs=75.2
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+ .+.-.++++..|=|.++ ..-++..|...++|||+|+-......... ......|..+.++.+-
T Consensus 56 ~~mAdgyar~---tg~~gv~~~t~GPG~~N---~l~gla~A~~~~~Pvl~ItG~~~~~~~~~--~~~q~~d~~~l~~~it 127 (576)
T PRK08611 56 ALAAAAYAKL---TGKIGVCLSIGGPGAIH---LLNGLYDAKMDHVPVLALAGQVTSDLLGT--DFFQEVNLEKMFEDVA 127 (576)
T ss_pred HHHHHHHHHH---hCCceEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCcccccCC--CCccccCHHHHhhccc
Confidence 4456666654 34445666667998887 34567778889999999997654432211 1112235667777776
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
--..+|+ +++.+..++.+|+..+..+.||+.|++-.
T Consensus 128 k~~~~v~--~~~~~~~~l~~A~~~A~~~~GPV~l~iP~ 163 (576)
T PRK08611 128 VYNHQIM--SAENLPEIVNQAIRTAYEKKGVAVLTIPD 163 (576)
T ss_pred ceeEEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEeCh
Confidence 6666776 88899999999998888888999998754
|
|
| >PRK07119 2-ketoisovalerate ferredoxin reductase; Validated | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.29 Score=48.85 Aligned_cols=111 Identities=14% Similarity=0.077 Sum_probs=77.4
Q ss_pred chHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHh--
Q 016903 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGR-- 225 (380)
Q Consensus 148 ~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~-- 225 (380)
.+.+|+|+++| +.++++.+-++.+. ..+|.+.+|+-..+|+++++.+-. + |.... ...+-.++.-
T Consensus 60 A~~~a~GAs~a------G~Ra~taTSg~Gl~--lm~E~l~~a~~~e~P~v~v~v~R~-~---p~~g~-t~~eq~D~~~~~ 126 (352)
T PRK07119 60 AINMVYGAAAT------GKRVMTSSSSPGIS--LKQEGISYLAGAELPCVIVNIMRG-G---PGLGN-IQPSQGDYFQAV 126 (352)
T ss_pred HHHHHHHHHhh------CCCEEeecCcchHH--HHHHHHHHHHHccCCEEEEEeccC-C---CCCCC-CcchhHHHHHHH
Confidence 36778888887 45688888777775 478999999999999888887654 1 11111 1112222211
Q ss_pred ------hcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCC
Q 016903 226 ------AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS 275 (380)
Q Consensus 226 ------a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~ 275 (380)
-++|.++ +-.|+.++++....|++.+.+..-|+++-..++ -+|+..
T Consensus 127 ~~~ghgd~~~~vl--~p~~~qEa~d~~~~Af~lAE~~~~PViv~~D~~--lsh~~~ 178 (352)
T PRK07119 127 KGGGHGDYRLIVL--APSSVQEMVDLTMLAFDLADKYRNPVMVLGDGV--LGQMME 178 (352)
T ss_pred hcCCCCCcceEEE--eCCCHHHHHHHHHHHHHHHHHhCCCEEEEcchh--hhCcee
Confidence 2235544 555999999999999998888889999988884 367643
|
|
| >PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.21 Score=50.29 Aligned_cols=116 Identities=18% Similarity=0.228 Sum_probs=76.3
Q ss_pred chHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccc-cccccccCCcCHH-HHHh
Q 016903 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIS-TPISDQFRSDGAV-VKGR 225 (380)
Q Consensus 148 ~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~-~~~~~~~~~~~~~-~~a~ 225 (380)
.+.+|+|+++| +.++++.+-=+++. ..+|.+.+|+-..+|+|+++.+.....+ -++. ....|+. .+..
T Consensus 60 A~~~a~GAs~a------G~Ra~TaTSg~Gl~--lm~E~~~~a~~~e~P~Viv~~~R~gp~tg~p~~--~~q~D~~~~~~~ 129 (376)
T PRK08659 60 SMAAVIGASWA------GAKAMTATSGPGFS--LMQENIGYAAMTETPCVIVNVQRGGPSTGQPTK--PAQGDMMQARWG 129 (376)
T ss_pred HHHHHHhHHhh------CCCeEeecCCCcHH--HHHHHHHHHHHcCCCEEEEEeecCCCCCCCCCC--cCcHHHHHHhcc
Confidence 47788888887 33455554444443 3679999999999998888877542111 1111 1112222 3333
Q ss_pred hcC-ceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCC
Q 016903 226 AYG-VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS 275 (380)
Q Consensus 226 a~G-~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~ 275 (380)
++| .+.+.+...|+.++++....|++.+.+.+-|++|-..++ -+|+..
T Consensus 130 ~hgd~~~ivl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~~--lsh~~~ 178 (376)
T PRK08659 130 THGDHPIIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADEV--VGHMRE 178 (376)
T ss_pred cCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechH--hhCCcc
Confidence 333 333555666999999999999999888889999998883 667653
|
|
| >PRK07525 sulfoacetaldehyde acetyltransferase; Validated | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.29 Score=52.11 Aligned_cols=107 Identities=16% Similarity=0.119 Sum_probs=71.5
Q ss_pred HHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCc
Q 016903 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|.|.|.+. +.-.++++..|=|.++ ..-++..|...++|||+|+-.-...... ...+...+....++.+--
T Consensus 57 ~~Adgyar~t---g~~gv~~~t~GPG~~n---~~~gi~~A~~~~~Pvl~I~g~~~~~~~~--~~~~q~~d~~~l~~~~tk 128 (588)
T PRK07525 57 HMADGYTRVT---GRMGMVIGQNGPGITN---FVTAVATAYWAHTPVVLVTPQAGTKTIG--QGGFQEAEQMPMFEDMTK 128 (588)
T ss_pred HHHHHHHHHh---CCCEEEEEcCCccHHH---HHHHHHHHhhcCCCEEEEeCCCCcccCC--CCCCcccchhhhhhhhee
Confidence 4566666543 3345666777999886 4456777888899999998322211000 011111245566776655
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 230 RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
...++. ++..+...+++|+..++.+.||+.|++..
T Consensus 129 ~~~~i~--~~~~~~~~i~rA~~~A~~~~GPV~i~iP~ 163 (588)
T PRK07525 129 YQEEVR--DPSRMAEVLNRVFDKAKRESGPAQINIPR 163 (588)
T ss_pred EEEECC--CHHHHHHHHHHHHHHHhcCCCCEEEEcCh
Confidence 666676 88999999999999888889999998864
|
|
| >PRK07524 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.33 Score=50.99 Aligned_cols=111 Identities=17% Similarity=0.030 Sum_probs=76.2
Q ss_pred chHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCccccccc-ccccCCcCHHHHHhh
Q 016903 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPI-SDQFRSDGAVVKGRA 226 (380)
Q Consensus 148 ~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~-~~~~~~~~~~~~a~a 226 (380)
..-+|.|.|... +.-.++++..|=|.++ ..-++..|..-++|||+|+-.......... .......|....++.
T Consensus 51 A~~mAdgyar~t---g~~gv~~~t~GpG~~n---~~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~~~~~~~d~~~l~~~ 124 (535)
T PRK07524 51 AGFMADGYARVS---GKPGVCFIITGPGMTN---IATAMGQAYADSIPMLVISSVNRRASLGKGRGKLHELPDQRAMVAG 124 (535)
T ss_pred HHHHHHHHHHHh---CCCeEEEECCCccHHH---HHHHHHHHHhcCCCEEEEeCCCChhhcCCCCccccccccHHHHhhh
Confidence 345566666543 3445677777888886 446688888899999999864432211110 000112366778888
Q ss_pred cCceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016903 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 227 ~G~~~~~VdG~D~~av~~a~~~a~~~ar~~-~gP~lIe~~t 266 (380)
+--...+|. +++.+...+.+|+..++.+ .||+.|++-.
T Consensus 125 ~tk~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~ 163 (535)
T PRK07524 125 VAAFSHTLM--SAEDLPEVLARAFAVFDSARPRPVHIEIPL 163 (535)
T ss_pred hceeEEEeC--CHHHHHHHHHHHHHHHhcCCCCcEEEEeCH
Confidence 877778887 8999999999999988876 5999998864
|
|
| >PRK09259 putative oxalyl-CoA decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.34 Score=51.32 Aligned_cols=110 Identities=16% Similarity=0.132 Sum_probs=73.2
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|-|.+.+. +.-.++++..|=|.++ ..-++..|..-++|||+|+-.-...............|....++.+-
T Consensus 60 ~~mAdgyar~t---g~~gv~~~t~GPG~~N---~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~~t 133 (569)
T PRK09259 60 GNAAAAAGFLT---QKPGVCLTVSAPGFLN---GLTALANATTNCFPMIMISGSSEREIVDLQQGDYEELDQLNAAKPFC 133 (569)
T ss_pred HHHHHHHHHHh---CCCEEEEEcCCccHHH---HHHHHHHHHhcCCCEEEEEccCCcccccccCCCccccchhhhhhhhe
Confidence 34455665543 3345666667888886 34567788889999999986543221000011112235566777776
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~-~gP~lIe~~t 266 (380)
-...+|+ ++.++...+.+|+..|..+ .||+.|++..
T Consensus 134 k~s~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 170 (569)
T PRK09259 134 KAAFRVN--RAEDIGIGVARAIRTAVSGRPGGVYLDLPA 170 (569)
T ss_pred eeeEEcC--CHHHHHHHHHHHHHHhhhCCCCcEEEEeCH
Confidence 6777787 8999999999999888776 5899998863
|
|
| >PRK06457 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.38 Score=50.74 Aligned_cols=107 Identities=16% Similarity=0.021 Sum_probs=71.8
Q ss_pred HHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCc
Q 016903 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|.|.|.+. +.-.++++..|=|.++ ..-++..|..-+.|||+|+-.-...... .......|....++.+--
T Consensus 53 ~mAdgyar~t---gkpgv~~~t~GPG~~N---~l~~l~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~l~~~vtk 124 (549)
T PRK06457 53 LAASVEAKIT---GKPSACMGTSGPGSIH---LLNGLYDAKMDHAPVIALTGQVESDMIG--HDYFQEVNLTKLFDDVAV 124 (549)
T ss_pred HHHHHHHHHh---CCCeEEEeCCCCchhh---hHHHHHHHHhcCCCEEEEecCCCccccC--CCcccccchhhhhcccee
Confidence 4566666543 4445666677888886 4566778888899999999653322111 111112245556665555
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 230 RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
...+|. ++.++...+++|+..+....||+.|++-.
T Consensus 125 ~~~~v~--~~~~~~~~i~~A~~~a~~~~GPV~l~iP~ 159 (549)
T PRK06457 125 FNQILI--NPENAEYIIRRAIREAISKRGVAHINLPV 159 (549)
T ss_pred EEEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEeCH
Confidence 556666 88899999999998888888999999864
|
|
| >PRK07064 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.41 Score=50.32 Aligned_cols=110 Identities=17% Similarity=0.111 Sum_probs=73.3
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccc-cCCcCHHHHHhhc
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQ-FRSDGAVVKGRAY 227 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~-~~~~~~~~~a~a~ 227 (380)
.-+|.|.|.+. +.-.++++..|=|.++ ..-++..|..-+.|||+|+-+-........... ....|..+.++.+
T Consensus 54 ~~~A~gyar~t---g~~~v~~~t~GpG~~N---~~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~~ 127 (544)
T PRK07064 54 VNMADAHARVS---GGLGVALTSTGTGAGN---AAGALVEALTAGTPLLHITGQIETPYLDQDLGYIHEAPDQLTMLRAV 127 (544)
T ss_pred HHHHHHHHHhc---CCCeEEEeCCCCcHHH---HHHHHHHHHhcCCCEEEEeCCCCcccccCCCcccccccCHHHHhhhh
Confidence 34566766543 3445667777988887 446677788899999999964221111100000 1123566777777
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016903 228 GVRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 228 G~~~~~VdG~D~~av~~a~~~a~~~ar~~-~gP~lIe~~t 266 (380)
--...+|+ ++.++..++.+|+..+..+ .||+.|++-.
T Consensus 128 tk~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~ 165 (544)
T PRK07064 128 SKAAFRVR--SAETALATIREAVRVALTAPTGPVSVEIPI 165 (544)
T ss_pred cceEEEeC--CHHHHHHHHHHHHHHhccCCCCcEEEEeCH
Confidence 66677776 8889999999999887776 6999998864
|
|
| >TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.35 Score=51.40 Aligned_cols=108 Identities=15% Similarity=0.072 Sum_probs=71.9
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+ .+.-.++++..|=|.++ ..-++..|..-+.|||+|.-.-..... ....+...|....++.+-
T Consensus 52 ~~~Adgyar~---tg~~gv~~~t~GPG~~N---~~~gla~A~~~~~Pvl~I~g~~~~~~~--~~~~~Q~~d~~~l~~~vt 123 (579)
T TIGR03457 52 GHMADGFARV---TGRMSMVIGQNGPGVTN---CVTAIAAAYWAHTPVVIVTPEAGTKTI--GLGGFQEADQLPMFQEFT 123 (579)
T ss_pred HHHHHHHHHH---hCCCEEEEECCCchHHH---HHHHHHHHhhcCCCEEEEeCCCccccC--CCCCCcccchhhhhhcce
Confidence 3456666654 24445666667999886 345677888889999999732211100 011111225556677666
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
-...+|. ++.++...+++|+..+..+.||+.|++-.
T Consensus 124 k~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP~ 159 (579)
T TIGR03457 124 KYQGHVR--HPSRMAEVLNRCFERAWREMGPAQLNIPR 159 (579)
T ss_pred eEEEecC--CHHHHHHHHHHHHHHHhcCCCCEEEEeCc
Confidence 6666776 88999999999998888888999998864
|
Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur. |
| >PRK07979 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.36 Score=51.22 Aligned_cols=109 Identities=17% Similarity=0.143 Sum_probs=75.7
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|-|.|.+. +.-.++++..|=|.++ ..-++..|...++|||+|+-.-...... ...+...|....++.+-
T Consensus 55 ~~mAdgYar~t---g~~gv~~~t~GPG~~n---~l~gi~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~l~~~~t 126 (574)
T PRK07979 55 VHMADGLARAT---GEVGVVLVTSGPGATN---AITGIATAYMDSIPLVVLSGQVATSLIG--YDAFQECDMVGISRPVV 126 (574)
T ss_pred HHHHHHHHHHh---CCceEEEECCCccHhh---hHHHHHHHhhcCCCEEEEECCCChhccC--CCCCceecHHHHhhccc
Confidence 34566666543 4456777778999886 3456777888899999998654322211 11122235667777776
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEee
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALTY 267 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~-gP~lIe~~t~ 267 (380)
-...+|. +++++...+++|+..++.+. ||+.|++-..
T Consensus 127 k~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPv~l~iP~D 164 (574)
T PRK07979 127 KHSFLVK--QTEDIPQVLKKAFWLAASGRPGPVVVDLPKD 164 (574)
T ss_pred ceEEEeC--CHHHHHHHHHHHHHHHccCCCCcEEEEcChh
Confidence 6677776 89999999999998888875 9999988653
|
|
| >TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.21 Score=49.97 Aligned_cols=114 Identities=17% Similarity=0.173 Sum_probs=72.2
Q ss_pred cccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHH-HH--HHHcCCCEEEEEEcCCccc-c-cccccccCC
Q 016903 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAAL-NF--SAVTEAPVIFICRNNGWAI-S-TPISDQFRS 217 (380)
Q Consensus 143 g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal-~~--A~~~~Lpvi~vv~NN~~~~-~-~~~~~~~~~ 217 (380)
..=|.++++|.|+.+|. +++.++++=-.++. .....| .+ ...|++|++++|-.-+.-- . .|++.. -+
T Consensus 33 ~~E~~av~iaaG~~lat-----G~~~~v~mQnSGlG--n~vN~l~SL~~~~~y~iP~l~~i~~RG~~g~~depqh~~-~G 104 (361)
T TIGR03297 33 ANEGAAVGLAAGAYLAT-----GKRAAVYMQNSGLG--NAVNPLTSLADTEVYDIPLLLIVGWRGEPGVHDEPQHVK-QG 104 (361)
T ss_pred CCchHHHHHHHHHHHhc-----CCccEEEEecCchh--hhhhHHHhhccccccCcCeeEEEecCCCCCCCCCchhhH-Hh
Confidence 34577788888888872 34444443222221 111222 22 4568999999997665421 1 222211 12
Q ss_pred cCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 016903 218 DGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEAL 265 (380)
Q Consensus 218 ~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~ 265 (380)
.-.....+++|++...++ .+.++....+.+|++++.+.++|+.|.+.
T Consensus 105 ~~t~~lL~~~~i~~~~~~-~~~~~~~~~~~~a~~~~~~~~~p~a~l~~ 151 (361)
T TIGR03297 105 RITLSLLDALEIPWEVLS-TDNDEALAQIERALAHALATSRPYALVVR 151 (361)
T ss_pred HHHHHHHHHcCCCEEECC-CChHHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 334578899999999994 35667888888888888888999888664
|
This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A |
| >PRK08266 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.43 Score=50.16 Aligned_cols=111 Identities=16% Similarity=0.079 Sum_probs=73.7
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccc-cCCcCHHHHHhhc
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQ-FRSDGAVVKGRAY 227 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~-~~~~~~~~~a~a~ 227 (380)
.-+|.|.|.+. +.-.++++..|=|.++ ..-++..|..-++|||+|+-.-..........+ ....|....++.+
T Consensus 56 ~~~A~gyar~t---g~~~v~~~t~GpG~~N---~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~~ 129 (542)
T PRK08266 56 GYMAFGYARST---GRPGVCSVVPGPGVLN---AGAALLTAYGCNSPVLCLTGQIPSALIGKGRGHLHEMPDQLATLRSF 129 (542)
T ss_pred HHHHHHHHHHh---CCCeEEEECCCCcHHH---HHHHHHHHHhhCCCEEEEecCCChhhccCCCCcceecccHhhHHhhh
Confidence 33667776553 3334566667998886 446677888899999999853221111110001 1113566777877
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 016903 228 GVRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 267 (380)
Q Consensus 228 G~~~~~VdG~D~~av~~a~~~a~~~ar~~-~gP~lIe~~t~ 267 (380)
--...+|+ +++++...+++|+..++.+ .||+.|++-..
T Consensus 130 tk~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~d 168 (542)
T PRK08266 130 TKWAERIE--HPSEAPALVAEAFQQMLSGRPRPVALEMPWD 168 (542)
T ss_pred cceEEEeC--CHHHHHHHHHHHHHHHhhCCCCcEEEEeCHh
Confidence 66777887 8899999999999888775 58999998753
|
|
| >PRK11269 glyoxylate carboligase; Provisional | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.47 Score=50.51 Aligned_cols=109 Identities=15% Similarity=0.141 Sum_probs=73.3
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+.. ++-.++++..|=|.++ ..-++..|..-++|||+|.-......... ..+...|....++.+-
T Consensus 55 ~~mAdGYar~t~--g~~gv~~~t~GPG~~N---~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~--~~~q~~d~~~l~~~it 127 (591)
T PRK11269 55 SHMAEGYTRATA--GNIGVCIGTSGPAGTD---MITGLYSASADSIPILCITGQAPRARLHK--EDFQAVDIESIAKPVT 127 (591)
T ss_pred HHHHHHHHHHcC--CCcEEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCCccccCC--CcccccChhhHhhcce
Confidence 345666665421 3344566667888886 34567778888999999986544322111 1112235566777666
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~-gP~lIe~~t 266 (380)
-...+|. +++++..++++|+..++.+. ||+.|++-.
T Consensus 128 k~s~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 164 (591)
T PRK11269 128 KWAVTVR--EPALVPRVFQQAFHLMRSGRPGPVLIDLPF 164 (591)
T ss_pred eEEEEcC--CHHHHHHHHHHHHHHHhhCCCCeEEEEeCh
Confidence 6666776 89999999999999888774 899999874
|
|
| >PRK06112 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.43 Score=50.63 Aligned_cols=108 Identities=18% Similarity=0.089 Sum_probs=73.3
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+. +.-.++++..|=|.++ ..-++..|..-++|||+|+-.-...... .......|....++.+-
T Consensus 62 ~~~Adgyar~t---g~~gv~~~t~GpG~~N---~~~gl~~A~~~~~Pvl~I~G~~~~~~~~--~~~~Q~~d~~~l~~~vt 133 (578)
T PRK06112 62 GAMADGYARVS---GKVAVVTAQNGPAATL---LVAPLAEALKASVPIVALVQDVNRDQTD--RNAFQELDHIALFQSCT 133 (578)
T ss_pred HHHHHHHHHHh---CCCEEEEeCCCCcHHH---HHHHHHHHhhcCCCEEEEecCCccccCC--CCCccccChhhhhcccc
Confidence 34566766543 4445666677888876 3466777888999999999543221111 11111235566777777
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~-gP~lIe~~t 266 (380)
-...+|+ +++++...+.+|+..++.+. ||+.|++-.
T Consensus 134 k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~ 170 (578)
T PRK06112 134 KWVRRVT--VAERIDDYVDQAFTAATSGRPGPVVLLLPA 170 (578)
T ss_pred ceEEEeC--CHHHHHHHHHHHHHHHhhCCCCcEEEEcCH
Confidence 6777777 88999999999998888874 899998864
|
|
| >PRK06456 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.43 Score=50.58 Aligned_cols=108 Identities=19% Similarity=0.086 Sum_probs=72.7
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|... +.-.++++..|=|.++ ..-++..|..-++|||+|.-.-....... ......|....++.+-
T Consensus 56 ~~~Adgyar~t---g~~gv~~~t~GpG~~N---~l~gi~~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~i~~~~t 127 (572)
T PRK06456 56 AHAADGYARAS---GVPGVCTATSGPGTTN---LVTGLITAYWDSSPVIAITGQVPRSVMGK--MAFQEADAMGVFENVT 127 (572)
T ss_pred HHHHHHHHHhh---CCCEEEEeCCCCCHHH---HHHHHHHHHhhCCCEEEEecCCCccccCC--CCccccchhhhhhccc
Confidence 44566666542 3334555567998887 44567778888999999986443222111 1111225566777776
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~-gP~lIe~~t 266 (380)
-...+|+ +++++...+.+|+..++.+. ||+.|++-.
T Consensus 128 k~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~ 164 (572)
T PRK06456 128 KYVIGIK--RIDEIPQWIKNAFYIATTGRPGPVVIDIPR 164 (572)
T ss_pred eeEEEeC--CHHHHHHHHHHHHHHHhcCCCCcEEEecCh
Confidence 6677776 88999999999998888765 999998864
|
|
| >PRK08273 thiamine pyrophosphate protein; Provisional | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.43 Score=50.92 Aligned_cols=109 Identities=14% Similarity=-0.016 Sum_probs=72.2
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|-|.|.+. +.-.++++..|=|+++ ..-++..|..-++|||+|+-.-..... ........|..+.++.+-
T Consensus 55 ~~~Adgyar~t---g~~gv~~~t~GPG~~n---~~~gi~~A~~d~vPvl~I~G~~~~~~~--~~~~~q~~d~~~l~~~vt 126 (597)
T PRK08273 55 AFMAVAHAKFT---GEVGVCLATSGPGAIH---LLNGLYDAKLDHVPVVAIVGQQARAAL--GGHYQQEVDLQSLFKDVA 126 (597)
T ss_pred HHHHHHHHHHh---CCCEEEEECCCccHHH---HHHHHHHHHhcCCCEEEEecCCchhhc--CCCCCCccCHHHHHHHHH
Confidence 34566666543 3345666667888886 345677788889999999853221111 011111234556666665
Q ss_pred -ceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016903 229 -VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 229 -~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~ 267 (380)
-...+|+ +++.+...+.+|+..|..+.||+.|++-..
T Consensus 127 ~k~~~~v~--~~~~~~~~l~~A~~~A~~~~gPV~i~iP~D 164 (597)
T PRK08273 127 GAFVQMVT--VPEQLRHLVDRAVRTALAERTVTAVILPND 164 (597)
T ss_pred HHHeeEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEeCcc
Confidence 4566777 888999999999988888889999988654
|
|
| >PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.49 Score=50.68 Aligned_cols=108 Identities=19% Similarity=0.153 Sum_probs=72.8
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.. .+.-.++++..|=|.++ ..-+|..|..-+.|||+|+-+-..... ....+...|....++.+-
T Consensus 73 a~aA~gyar~---tgk~gv~~~t~GPG~~n---~l~gl~~A~~d~~Pvl~i~G~~~~~~~--~~~~~Qe~d~~~~~~~vt 144 (616)
T PRK07418 73 AHAADGYARA---TGKVGVCFGTSGPGATN---LVTGIATAQMDSVPMVVITGQVPRPAI--GTDAFQETDIFGITLPIV 144 (616)
T ss_pred HHHHHHHHHH---hCCCeEEEECCCccHHH---HHHHHHHHHhcCCCEEEEecCCCcccc--CCCCcccccHHHHhhhcc
Confidence 4456666544 34445666667998886 445677888899999999864332110 011111235566677666
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~-gP~lIe~~t 266 (380)
-...+|+ +++++..++.+|+..|..++ ||+.|++-.
T Consensus 145 k~~~~v~--~~~~i~~~l~~A~~~A~~~~~GPv~l~iP~ 181 (616)
T PRK07418 145 KHSYVVR--DPSDMARIVAEAFHIASSGRPGPVLIDIPK 181 (616)
T ss_pred eeEEEeC--CHHHHHHHHHHHHHHHhcCCCCcEEEecch
Confidence 5566777 89999999999999888876 999998764
|
|
| >PRK06276 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.51 Score=50.22 Aligned_cols=108 Identities=20% Similarity=0.151 Sum_probs=73.7
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
..+|.|.|++. +.-.++++..|=|.++ ..-++..|..-++|||+|+-.-...... .......|....++.+-
T Consensus 51 ~~~Adgyar~t---g~~gv~~~t~GPG~~n---~l~~i~~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~~d~~~l~~~~t 122 (586)
T PRK06276 51 AHAADGYARAS---GKVGVCVATSGPGATN---LVTGIATAYADSSPVIALTGQVPTKLIG--NDAFQEIDALGIFMPIT 122 (586)
T ss_pred HHHHHHHHHHh---CCCEEEEECCCccHHH---HHHHHHHHHhcCCCEEEEeCCCCccccC--CCCCccccHhhHHhhhc
Confidence 45666766543 3445666677888886 3466777888899999998533221111 11111235666777777
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~-gP~lIe~~t 266 (380)
-...+|+ +++++...+.+|+..|..++ ||+.|++-.
T Consensus 123 k~s~~v~--~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~ 159 (586)
T PRK06276 123 KHNFQIK--KPEEIPEIFRAAFEIAKTGRPGPVHIDLPK 159 (586)
T ss_pred ceEEecC--CHHHHHHHHHHHHHHhcCCCCCcEEEEcCh
Confidence 6777787 88999999999998888774 899998864
|
|
| >PRK06466 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.43 Score=50.59 Aligned_cols=108 Identities=19% Similarity=0.170 Sum_probs=74.8
Q ss_pred HHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCc
Q 016903 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|-|.|.+. +.-.++++..|=|.++ ..-++..|..-++|||+|.-......... ......|....++.+--
T Consensus 56 ~mAdgyar~t---g~~gv~~vt~GPG~~N---~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~l~~~itk 127 (574)
T PRK06466 56 HMADGYARAT---GKTGVVLVTSGPGATN---AITGIATAYMDSIPMVVLSGQVPSTLIGE--DAFQETDMVGISRPIVK 127 (574)
T ss_pred HHHHHHHHHh---CCCEEEEECCCccHHH---HHHHHHHHHhcCCCEEEEecCCCccccCC--Ccccccchhhhhhccce
Confidence 3566666543 4445677777898886 44667788888999999986544322111 11112355667777766
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEee
Q 016903 230 RSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALTY 267 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~a~~~ar~~~-gP~lIe~~t~ 267 (380)
...+|+ ++..+...+++|+..|+.+. ||+.|++-..
T Consensus 128 ~s~~v~--~~~~~~~~~~rA~~~A~~~~~GPV~l~iP~D 164 (574)
T PRK06466 128 HSFMVK--HASEIPEIIKKAFYIAQSGRPGPVVVDIPKD 164 (574)
T ss_pred eEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 677777 89999999999998888774 9999988654
|
|
| >PRK06725 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.43 Score=50.69 Aligned_cols=108 Identities=20% Similarity=0.187 Sum_probs=74.7
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|-|.|... +.-.++++..|=|.++ ..-++..|..-+.|||+|+-........ .......|....++.+-
T Consensus 65 ~~mAdgyar~t---g~~gv~~~t~GpG~~N---~~~gla~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~~d~~~l~~~it 136 (570)
T PRK06725 65 IHAAEGYARAS---GKVGVVFATSGPGATN---LVTGLADAYMDSIPLVVITGQVATPLIG--KDGFQEADVVGITVPVT 136 (570)
T ss_pred HHHHHHHHHHh---CCCeEEEECCCccHHH---HHHHHHHHhhcCcCEEEEecCCCccccc--CCCCcccchhhhhhccc
Confidence 34566666543 4445667777888886 3456777888899999998643322111 11122236667788777
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~-gP~lIe~~t 266 (380)
-...+|. +++.+...+++|+..++.+. ||+.|++-.
T Consensus 137 k~~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~ 173 (570)
T PRK06725 137 KHNYQVR--DVNQLSRIVQEAFYIAESGRPGPVLIDIPK 173 (570)
T ss_pred eeEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEcccc
Confidence 6777787 89999999999999888875 899998864
|
|
| >PRK07586 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.45 Score=49.70 Aligned_cols=109 Identities=18% Similarity=0.086 Sum_probs=73.0
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|-|.|... +.-.++++..|=|.++ ..-++..|..-+.|||+|+-.-...... .......|....++.+-
T Consensus 52 ~~mAdgyar~t---g~~gv~~~t~GPG~~N---~~~gl~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~~~~~vt 123 (514)
T PRK07586 52 TGAADGYARMA---GKPAATLLHLGPGLAN---GLANLHNARRARTPIVNIVGDHATYHRK--YDAPLTSDIEALARPVS 123 (514)
T ss_pred HHHHHHHHHHH---CCCEEEEecccHHHHH---HHHHHHHHHhcCCCEEEEecCCchhccC--CCcccccchhhhhcccc
Confidence 44566666542 3445566677888775 3345666888899999998653322111 11111235666777776
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 267 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~-~gP~lIe~~t~ 267 (380)
-...+|. +++++...+++|+..++.+ .||+.|++-..
T Consensus 124 k~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~D 161 (514)
T PRK07586 124 GWVRRSE--SAADVAADAAAAVAAARGAPGQVATLILPAD 161 (514)
T ss_pred ceeeecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEeccc
Confidence 5666777 8899999999999888887 69999988653
|
|
| >TIGR01504 glyox_carbo_lig glyoxylate carboligase | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.47 Score=50.59 Aligned_cols=110 Identities=15% Similarity=0.157 Sum_probs=73.4
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|-|.|.+.. +.-.++++..|=|.++ ..-++..|...++|||+|+-.-....... ..+...|....++.+-
T Consensus 54 ~~mAdgyaR~t~--g~~gv~~~t~GpG~~N---~~~gla~A~~~~~Pvl~I~G~~~~~~~~~--~~~q~~D~~~~~~~vt 126 (588)
T TIGR01504 54 SHMAEGYTRATA--GNIGVCIGTSGPAGTD---MITGLYSASADSIPILCITGQAPRARLHK--EDFQAVDIAAIAKPVS 126 (588)
T ss_pred HHHHHHHHHhcC--CCeEEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecCCCccccCC--CcccccCHHHHhhhhc
Confidence 345556654320 2333455556888886 34567778888999999996544332111 1122235667788777
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEee
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALTY 267 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~-gP~lIe~~t~ 267 (380)
-...+|. +++++...+++|+..++.+. ||+.|++-..
T Consensus 127 k~~~~v~--~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~D 164 (588)
T TIGR01504 127 KMAVTVR--EAALVPRVLQQAFHLMRSGRPGPVLIDLPFD 164 (588)
T ss_pred eEEEEcC--CHHHHHHHHHHHHHHHccCCCCeEEEEeCcc
Confidence 7777777 89999999999998888765 8999988653
|
Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism. |
| >PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.56 Score=47.46 Aligned_cols=114 Identities=21% Similarity=0.261 Sum_probs=76.3
Q ss_pred chHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhc
Q 016903 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 227 (380)
Q Consensus 148 ~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~ 227 (380)
.+.+|+|+++| +.++++.+-=++++ ..+|.|.+|+-..+|+|+++.|-... ++..-.....|+. .++--
T Consensus 61 A~~~aiGAs~a------GaRa~TaTSg~Gl~--lm~E~l~~aa~~~lPiVi~~~~R~~p--~~~~~~~~q~D~~-~~~d~ 129 (390)
T PRK08366 61 AMAACIGASAA------GARAFTATSAQGLA--LMHEMLHWAAGARLPIVMVDVNRAMA--PPWSVWDDQTDSL-AQRDT 129 (390)
T ss_pred HHHHHHHHHhh------CCCeEeeeCcccHH--HHhhHHHHHHhcCCCEEEEEeccCCC--CCCCCcchhhHHH-HHhhc
Confidence 37788888887 34566655545554 47899999999999988887755432 2221111112222 12333
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCC
Q 016903 228 GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS 275 (380)
Q Consensus 228 G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~ 275 (380)
||-++ -..|+.+.++....|++.+.+..-|+++-...|+.. |...
T Consensus 130 g~i~~--~~~~~QEa~d~t~~Af~lAE~~~~PViv~~Dg~~~s-h~~~ 174 (390)
T PRK08366 130 GWMQF--YAENNQEVYDGVLMAFKVAETVNLPAMVVESAFILS-HTYD 174 (390)
T ss_pred CEEEE--eCCCHHHHHHHHHHHHHHHHHHCCCEEEEecCcccc-cccc
Confidence 66443 346999999999999998888899999999888765 5443
|
|
| >PLN02470 acetolactate synthase | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.47 Score=50.51 Aligned_cols=108 Identities=20% Similarity=0.187 Sum_probs=74.2
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+. +.-.++++..|=|.++ ..-++..|..-+.|||+|.-.-...... .......|....++.+-
T Consensus 64 ~~~Adgyar~t---g~~gv~~~t~GPG~~N---~l~gia~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~~d~~~l~~~~t 135 (585)
T PLN02470 64 VFAAEGYAKAS---GKVGVCIATSGPGATN---LVTGLADALLDSVPLVAITGQVPRRMIG--TDAFQETPIVEVTRSIT 135 (585)
T ss_pred HHHHHHHHHHh---CCCEEEEECCCccHHH---HHHHHHHHHhcCCcEEEEecCCChhhcC--CCcCcccchhhhhhhhe
Confidence 44566776543 3445677777998886 4456777888899999998644322111 11112234556677776
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~-gP~lIe~~t 266 (380)
-...+|+ ++.++..++++|+..++.++ ||+.|++-.
T Consensus 136 k~~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~ 172 (585)
T PLN02470 136 KHNYLVM--DVEDIPRVIREAFFLASSGRPGPVLVDIPK 172 (585)
T ss_pred EEEEEcC--CHHHHHHHHHHHHHHhcCCCCCeEEEEecC
Confidence 6677776 89999999999999888875 999999864
|
|
| >PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.2 Score=46.96 Aligned_cols=112 Identities=19% Similarity=0.212 Sum_probs=67.1
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccc-cccccccCCcCHHHHHhhc
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIS-TPISDQFRSDGAVVKGRAY 227 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~-~~~~~~~~~~~~~~~a~a~ 227 (380)
+.+++|++++ +.++++.+-=.+++ ...|.|.+++-.++|+|+++.|-.-... .++.. ...|+ -.++.+
T Consensus 49 ~~~~~GAs~a------G~ra~t~ts~~Gl~--lm~e~l~~a~~~~~P~V~~~~~R~g~~~g~~~~~--~q~D~-~~~~d~ 117 (230)
T PF01855_consen 49 MEAAIGASAA------GARAMTATSGPGLN--LMAEPLYWAAGTELPIVIVVVQRAGPSPGLSTQP--EQDDL-MAARDS 117 (230)
T ss_dssp HHHHHHHHHT------T--EEEEEECCHHH--HHCCCHHHHHHTT--EEEEEEEB---SSSB--SB---SHHH-HHTTTS
T ss_pred HHHHHHHHhc------CCceEEeecCCccc--ccHhHHHHHHHcCCCEEEEEEECCCCCCCCcCcC--ChhHH-HHHHhc
Confidence 6677787776 23444444333332 3567789999999998888877543222 11111 11122 123467
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCC
Q 016903 228 GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT 274 (380)
Q Consensus 228 G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~ 274 (380)
||.++... |+.+.++....|.+.+.+..-|+++-...++. .|+.
T Consensus 118 ~~~vl~p~--~~QEa~d~~~~A~~lAe~~~~PViv~~Dg~~~-sh~~ 161 (230)
T PF01855_consen 118 GWIVLAPS--SPQEAYDMTLIAFNLAEKYQTPVIVLFDGFLC-SHSR 161 (230)
T ss_dssp S-EEEE----SHHHHHHHHHHHHHHHHHHTSEEEEEEECCCC-TC-E
T ss_pred CeEEEeCC--CHHHHHHHHHHHHHHHHHHCCCEEEEechhhh-cCcc
Confidence 88877665 99999999999999999999999999888765 3554
|
This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B .... |
| >cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.74 Score=40.26 Aligned_cols=99 Identities=22% Similarity=0.207 Sum_probs=60.4
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHH-HHHHcCCCEEEEEEcCCccc--ccccccccCCcCHHHHHh
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALN-FSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKGR 225 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~-~A~~~~Lpvi~vv~NN~~~~--~~~~~~~~~~~~~~~~a~ 225 (380)
+++|.|+|+. + .++++++. ..|.. ..++.+. .++.+++|+++++...+++. .++++.. ..++ ...+
T Consensus 52 vg~A~GlA~~----G-~~pi~~~~--~~f~~-ra~dqi~~~~a~~~~pv~~~~~~~g~~~~~~G~tH~~--~~~~-a~~~ 120 (156)
T cd07033 52 VGIAAGLALH----G-LKPFVSTF--SFFLQ-RAYDQIRHDVALQNLPVKFVGTHAGISVGEDGPTHQG--IEDI-ALLR 120 (156)
T ss_pred HHHHHHHHHC----C-CeEEEEEC--HHHHH-HHHHHHHHHHhccCCCeEEEEECCcEecCCCCcccch--HHHH-HHhc
Confidence 5566666643 3 34455544 44432 3445555 88999999999998776654 3333322 1222 2233
Q ss_pred hc-CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016903 226 AY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 226 a~-G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~ 264 (380)
.+ |+.++. -.|+.++...++.|++. ++|++|-.
T Consensus 121 ~iPg~~v~~--Ps~~~~~~~ll~~a~~~----~~P~~irl 154 (156)
T cd07033 121 AIPNMTVLR--PADANETAAALEAALEY----DGPVYIRL 154 (156)
T ss_pred CCCCCEEEe--cCCHHHHHHHHHHHHhC----CCCEEEEe
Confidence 33 555554 44899999999999863 67988753
|
Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included |
| >PRK08322 acetolactate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.56 Score=49.34 Aligned_cols=108 Identities=15% Similarity=0.117 Sum_probs=72.7
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+. +.-.++++..|=|.++ ..-++..|..-++|||+|+-+-...... .......|....++.+-
T Consensus 51 ~~~A~gyar~t---g~~gv~~~t~GpG~~N---~~~~i~~A~~~~~Pll~i~g~~~~~~~~--~~~~q~~d~~~~~~~~t 122 (547)
T PRK08322 51 AFMAATYGRLT---GKAGVCLSTLGPGATN---LVTGVAYAQLGGMPMVAITGQKPIKRSK--QGSFQIVDVVAMMAPLT 122 (547)
T ss_pred HHHHHHHHHhh---CCCEEEEECCCccHhH---HHHHHHHHhhcCCCEEEEeccccccccC--CCccccccHHHHhhhhe
Confidence 44566666543 3445666666888886 4456777888899999999643322111 11122235666777665
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~-~gP~lIe~~t 266 (380)
-...+|. +++++...+.+|+..+..+ .||+.|++-.
T Consensus 123 k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 159 (547)
T PRK08322 123 KWTRQIV--SPDNIPEVVREAFRLAEEERPGAVHLELPE 159 (547)
T ss_pred eEEEEeC--CHHHHHHHHHHHHHHHccCCCCcEEEEcCh
Confidence 5666776 8999999999999888886 4899998864
|
|
| >PRK07789 acetolactate synthase 1 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.56 Score=50.20 Aligned_cols=108 Identities=20% Similarity=0.202 Sum_probs=73.2
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+. +.-.++++..|=|.++ ..-++..|..-++|||+|+-.-...... .......|....++.+-
T Consensus 82 ~~~Adgyar~t---g~~gv~~~t~GPG~~N---~l~gl~~A~~~~~PllvI~G~~~~~~~~--~~~~q~~d~~~l~~~~t 153 (612)
T PRK07789 82 GHAAEGYAQAT---GRVGVCMATSGPGATN---LVTPIADANMDSVPVVAITGQVGRGLIG--TDAFQEADIVGITMPIT 153 (612)
T ss_pred HHHHHHHHHHh---CCCEEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecCCCccccC--CCcCcccchhhhhhcce
Confidence 44566666543 3445667777888886 3456777888899999999643322111 11122235666777766
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~-~gP~lIe~~t 266 (380)
-...+|+ ++.++...+.+|+..++.+ .||+.|++-.
T Consensus 154 k~s~~v~--~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~ 190 (612)
T PRK07789 154 KHNFLVT--DADDIPRVIAEAFHIASTGRPGPVLVDIPK 190 (612)
T ss_pred eEEEEcC--CHHHHHHHHHHHHHHHhcCCCceEEEEEcc
Confidence 6666776 8999999999999888876 4899998864
|
|
| >PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.46 Score=50.04 Aligned_cols=108 Identities=20% Similarity=0.193 Sum_probs=72.3
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+. +.-.++++..|=|.++ ..-++..|..-++|||+|.-.-....... ......|....++.+-
T Consensus 51 ~~~Adgyar~s---g~~gv~~~t~GpG~~n---~~~~l~~A~~~~~Pvl~i~g~~~~~~~~~--~~~q~~d~~~~~~~~t 122 (548)
T PRK08978 51 AMAAIGYARAT---GKVGVCIATSGPGATN---LITGLADALLDSVPVVAITGQVSSPLIGT--DAFQEIDVLGLSLACT 122 (548)
T ss_pred HHHHHHHHHHh---CCCEEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCCccccCC--CCCcccchhccccCce
Confidence 44566666553 4455667777888886 44667778888999999986433221111 1111124445666665
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~-gP~lIe~~t 266 (380)
-...+|+ +++++...+++|+..++.+. ||+.|++-.
T Consensus 123 k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 159 (548)
T PRK08978 123 KHSFLVQ--SLEELPEIMAEAFEIASSGRPGPVLVDIPK 159 (548)
T ss_pred eeEEEEC--CHHHHHHHHHHHHHHHhcCCCCcEEEecCh
Confidence 5667776 89999999999998888864 999998864
|
|
| >TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.58 Score=49.39 Aligned_cols=108 Identities=19% Similarity=0.179 Sum_probs=73.8
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|... +.-.++++..|=|.++ ..-++..|..-++|||+|+-.-...... .......|....++.+-
T Consensus 52 ~~~Adgyar~t---g~~gv~~~t~GpG~~n---~l~~i~~A~~~~~Pvl~i~g~~~~~~~~--~~~~q~~d~~~~~~~~t 123 (558)
T TIGR00118 52 AHAADGYARAS---GKVGVVLVTSGPGATN---LVTGIATAYMDSIPMVVFTGQVPTSLIG--SDAFQEADILGITMPIT 123 (558)
T ss_pred HHHHHHHHHHh---CCCEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEecCCCccccC--CCCCcccChhhhhcCcc
Confidence 34566766543 3445677777888886 4566778888999999998643221111 11111235566777777
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~-gP~lIe~~t 266 (380)
-...+|+ ++.++...+.+|+..+..+. ||+.|++-.
T Consensus 124 k~~~~v~--~~~~~~~~v~~A~~~A~~~~~GPV~i~iP~ 160 (558)
T TIGR00118 124 KHSFQVK--SAEDIPRIIKEAFHIATTGRPGPVLVDLPK 160 (558)
T ss_pred ceeEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEEcCh
Confidence 7777887 88999999999998888774 899998864
|
Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed. |
| >PRK07710 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.55 Score=49.80 Aligned_cols=108 Identities=17% Similarity=0.187 Sum_probs=72.1
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+. +.-.++++..|=|.++ ..-++..|..-++|||+|.-......... ......|....++.+-
T Consensus 66 ~~~A~gyar~t---g~~gv~~~t~GPG~~N---~~~gl~~A~~~~~Pvl~ItG~~~~~~~~~--~~~q~~d~~~l~~~~t 137 (571)
T PRK07710 66 IHAAEGYARIS---GKPGVVIATSGPGATN---VVTGLADAMIDSLPLVVFTGQVATSVIGS--DAFQEADIMGITMPVT 137 (571)
T ss_pred HHHHHHHHHHh---CCCeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEeccCCccccCC--CCccccchhhhhhccc
Confidence 45666766553 3345666667888886 44567778888999999986544321111 1111224556666665
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~-gP~lIe~~t 266 (380)
-...+|. +++.+...+++|+..++.+. ||+.|++-.
T Consensus 138 k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 174 (571)
T PRK07710 138 KHNYQVR--KASDLPRIIKEAFHIATTGRPGPVLIDIPK 174 (571)
T ss_pred ceEEecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCh
Confidence 5566666 88899999999998888774 999998875
|
|
| >PRK12474 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.66 Score=48.60 Aligned_cols=109 Identities=17% Similarity=0.014 Sum_probs=71.8
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|-|.|.+ .+.-.++++..|=|.++ ..-++..|..-+.|||+|+-......... ......|....++.+-
T Consensus 56 ~~mAdgYaR~---tg~~gv~~~t~GpG~~N---~~~gl~~A~~d~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~~~~~vt 127 (518)
T PRK12474 56 TGAADGYGRI---AGKPAVTLLHLGPGLAN---GLANLHNARRAASPIVNIVGDHAVEHLQY--DAPLTSDIDGFARPVS 127 (518)
T ss_pred HHHHHHHHHH---hCCCEEEEEccchhHhH---hHHHHHHHhhcCCCEEEEeccCchhhcCC--CCccccCHHHhhhccc
Confidence 3456666654 34445667777999886 33456668888899999996433221111 1111135666777665
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEee
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALTY 267 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~-gP~lIe~~t~ 267 (380)
-...+|+ +++++..++++|+..+.++. ||++|++-..
T Consensus 128 k~~~~v~--~~~~~~~~i~rA~~~A~~~~~GPV~l~iP~D 165 (518)
T PRK12474 128 RWVHRSA--SAGAVDSDVARAVQAAQSAPGGIATLIMPAD 165 (518)
T ss_pred ceeeecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEechh
Confidence 5556666 89999999999998877775 8999988643
|
|
| >PRK09107 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.61 Score=49.77 Aligned_cols=108 Identities=19% Similarity=0.178 Sum_probs=73.3
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|-|.|+.. +.-.++++..|=|.++ ..-++..|...+.|||+|.-......... ......|....++.+-
T Consensus 62 ~~mAdgyar~t---g~~gv~~~t~GPG~~N---~l~gia~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~l~~~vt 133 (595)
T PRK09107 62 GHAAEGYARST---GKPGVVLVTSGPGATN---AVTPLQDALMDSIPLVCITGQVPTHLIGS--DAFQECDTVGITRPCT 133 (595)
T ss_pred HHHHHHHHHHh---CCCEEEEECCCccHhH---HHHHHHHHhhcCCCEEEEEcCCChhhcCC--CCCcccchhhhhhhhe
Confidence 44566666542 3445667777888886 34567778888999999986544322111 1111234556666665
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~-gP~lIe~~t 266 (380)
--..+|+ +++++...+.+|+..++.+. ||+.|++-.
T Consensus 134 k~~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~ 170 (595)
T PRK09107 134 KHNWLVK--DVNDLARVIHEAFHVATSGRPGPVVVDIPK 170 (595)
T ss_pred EEEEEeC--CHHHHHHHHHHHHHHhcCCCCceEEEecCC
Confidence 5666776 89999999999999988874 899998754
|
|
| >PRK08979 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.66 Score=49.21 Aligned_cols=108 Identities=19% Similarity=0.171 Sum_probs=73.1
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|-|.|.+. +.-.++++..|=|.++ ..-++..|..-++|||+|.-.-...... .......|....++.+-
T Consensus 55 ~~mAdgyar~t---g~~gv~~~t~GpG~~n---~l~gia~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~~~~~it 126 (572)
T PRK08979 55 VHMADGYARAT---GKVGVVLVTSGPGATN---TITGIATAYMDSIPMVVLSGQVPSNLIG--NDAFQECDMIGISRPVV 126 (572)
T ss_pred HHHHHHHHHHh---CCCeEEEECCCchHhH---HHHHHHHHhhcCCCEEEEecCCCccccC--CCCCcccchhHHhhhce
Confidence 44566766543 3445566666888886 3355777888899999998543322111 11122235666777776
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~-gP~lIe~~t 266 (380)
-...+|+ +++++...+++|+..|+.+. ||+.|++-.
T Consensus 127 k~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~ 163 (572)
T PRK08979 127 KHSFLVK--DAEDIPEIIKKAFYIASTGRPGPVVIDLPK 163 (572)
T ss_pred eEEEecC--CHHHHHHHHHHHHHHHhCCCCCcEEEecCH
Confidence 6677777 89999999999999888865 899998764
|
|
| >PRK06882 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.69 Score=49.03 Aligned_cols=108 Identities=19% Similarity=0.188 Sum_probs=72.3
Q ss_pred HHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCc
Q 016903 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|-|.|.+. +.-.++++..|=|.++ ..-++..|...++|||+|.-.-...... .......|....++.+--
T Consensus 56 ~mAdgyar~t---g~~gv~~~t~GpG~~N---~l~~i~~A~~~~~Pvlvi~G~~~~~~~~--~~~~q~~d~~~l~~~vtk 127 (574)
T PRK06882 56 HMADGYARST---GKVGCVLVTSGPGATN---AITGIATAYTDSVPLVILSGQVPSNLIG--TDAFQECDMLGISRPVVK 127 (574)
T ss_pred HHHHHHHHhh---CCCeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecCCCccccC--CCcccccchhhhhhcccc
Confidence 4566666543 3445666667888886 3456777888899999998644322111 111112355667777666
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 016903 230 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 267 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~a~~~ar~~-~gP~lIe~~t~ 267 (380)
...+|. ++.++...+.+|+..++.+ .||+.|++-..
T Consensus 128 ~s~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 164 (574)
T PRK06882 128 HSFIVK--NAEDIPSTIKKAFYIASTGRPGPVVIDIPKD 164 (574)
T ss_pred eEEEeC--CHHHHHHHHHHHHHHHhcCCCCCEEEecCHH
Confidence 677776 8899999999999887775 49999988653
|
|
| >PRK08199 thiamine pyrophosphate protein; Validated | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.65 Score=49.04 Aligned_cols=108 Identities=14% Similarity=0.092 Sum_probs=70.6
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+ .+.-.+++|..|=|.++ ..-++..|-.-++|||+|.-.-...... .......|....++.+=
T Consensus 59 ~~~Adgyar~---tg~~gv~~~t~GpG~~N---~~~gi~~A~~~~~Pvl~i~g~~~~~~~~--~~~~q~~d~~~l~~~~t 130 (557)
T PRK08199 59 AMMAEAYGKL---TGRPGICFVTRGPGATN---ASIGVHTAFQDSTPMILFVGQVARDFRE--REAFQEIDYRRMFGPMA 130 (557)
T ss_pred HHHHHHHHHh---cCCCEEEEeCCCccHHH---HHHHHHHHhhcCCCEEEEecCCccccCC--CCcccccCHHHhhhhhh
Confidence 3456666654 23445666667888886 4456777888899999998543321111 11111124555666554
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~-~gP~lIe~~t 266 (380)
-...+|. +++++...+.+|+..+..+ .||+.|++-.
T Consensus 131 k~~~~v~--~~~~~~~~~~~A~~~A~~~~~GPV~l~iP~ 167 (557)
T PRK08199 131 KWVAEID--DAARIPELVSRAFHVATSGRPGPVVLALPE 167 (557)
T ss_pred ceeeecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCH
Confidence 4556665 8999999999999888887 4899998763
|
|
| >TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.61 Score=49.14 Aligned_cols=110 Identities=18% Similarity=0.105 Sum_probs=69.7
Q ss_pred HHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCccccccc---ccccC-CcCHHHHHh
Q 016903 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPI---SDQFR-SDGAVVKGR 225 (380)
Q Consensus 150 p~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~---~~~~~-~~~~~~~a~ 225 (380)
-+|.|.|.+. +.-.++++..|=|.++ ..-++..|..-++|||+|.-+......... +.+.. .++....++
T Consensus 52 ~~Adgyar~t---g~~gv~~~t~GpG~~n---~~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (535)
T TIGR03394 52 FAADAAARYR---GTLGVAAVTYGAGAFN---MVNAIAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDSQFQVFK 125 (535)
T ss_pred HHHhHHHHhh---CCceEEEEecchHHHh---hhhHHHHHhhcCCCEEEEECCCCcccccCCceeEeeccchHHHHHhhh
Confidence 3466666543 4455677777999887 345677788889999999865432211110 01111 112345566
Q ss_pred hcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016903 226 AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 226 a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~ 267 (380)
..--...+|. ++..+.+.+++|+..+....||+.|++-..
T Consensus 126 ~vtk~~~~v~--~~~~~~~~~~~A~~~a~~~~gPv~i~iP~D 165 (535)
T TIGR03394 126 EVTCDQAVLD--DPATAPAEIARVLGSARELSRPVYLEIPRD 165 (535)
T ss_pred hheEEEEEeC--ChHHhHHHHHHHHHHHHHCCCCEEEEechh
Confidence 5544455665 777888888888877777889999998653
|
A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase. |
| >PRK06965 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.85 Score=48.59 Aligned_cols=109 Identities=20% Similarity=0.148 Sum_probs=72.3
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|-|.|.+. +.-.++++..|=|.++ ..-++..|...++|||+|.-.-...... .......|....++.+-
T Consensus 72 ~~~AdgYar~t---g~~gv~~~t~GpG~~N---~l~gl~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~l~~~it 143 (587)
T PRK06965 72 VHAADGYARAT---GKVGVALVTSGPGVTN---AVTGIATAYMDSIPMVVISGQVPTAAIG--QDAFQECDTVGITRPIV 143 (587)
T ss_pred HHHHHHHHHHh---CCCeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecCCCccccC--CCCcccccHHHHhcCCc
Confidence 34666776553 3445666667888886 3455777888899999998432211110 11111235556677776
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 267 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~-~gP~lIe~~t~ 267 (380)
-...+|. +++++...+.+|+..++.+ .||+.|++-..
T Consensus 144 k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 181 (587)
T PRK06965 144 KHNFLVK--DVRDLAETVKKAFYIARTGRPGPVVVDIPKD 181 (587)
T ss_pred ceeEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEEeChh
Confidence 6677777 8899999999999888887 49999988653
|
|
| >PRK08155 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.73 Score=48.75 Aligned_cols=108 Identities=18% Similarity=0.141 Sum_probs=70.6
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|++. +.-.++++..|=|.++ ..-++..|...+.|||+|.-.-....... .....-|....++.+-
T Consensus 64 ~~~Adgyar~t---g~~gv~~~t~GpG~~N---~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~~~~~~t 135 (564)
T PRK08155 64 GFIAQGMARTT---GKPAVCMACSGPGATN---LVTAIADARLDSIPLVCITGQVPASMIGT--DAFQEVDTYGISIPIT 135 (564)
T ss_pred HHHHHHHHHHc---CCCeEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEeccCCcccccC--CCccccchhhhhhccc
Confidence 34566776653 3334555566888886 34567778889999999985433221111 1111124445566655
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~-~gP~lIe~~t 266 (380)
-...+|+ ++.++...+.+|+..++.+ .||+.|++-.
T Consensus 136 k~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~i~iP~ 172 (564)
T PRK08155 136 KHNYLVR--DIEELPQVISDAFRIAQSGRPGPVWIDIPK 172 (564)
T ss_pred eEEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCH
Confidence 5566676 8999999999999888887 4999999854
|
|
| >PRK05858 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.63 E-value=1 Score=47.52 Aligned_cols=108 Identities=15% Similarity=0.019 Sum_probs=71.1
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|-|.|.+. +.-.++++..|=|.++ ..-++..|..-+.|||+|.-+-....... ......|....++.+-
T Consensus 55 ~~~AdGyar~t---g~~gv~~~t~GpG~~n---~~~~i~~A~~~~~Pvl~i~g~~~~~~~~~--~~~q~~d~~~l~~~~t 126 (542)
T PRK05858 55 AFAAEAWAKLT---RVPGVAVLTAGPGVTN---GMSAMAAAQFNQSPLVVLGGRAPALRWGM--GSLQEIDHVPFVAPVT 126 (542)
T ss_pred HHHHHHHHHhc---CCCeEEEEcCCchHHH---HHHHHHHHHhcCCCEEEEeCCCCcccCCC--CCCcccchhhhhhhhh
Confidence 44566666552 3344556666888776 34567788888999999885443221111 1111234556777776
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~-~gP~lIe~~t 266 (380)
-...+|+ +++.+.+.+.+|+..+..+ .||+.|++-.
T Consensus 127 k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 163 (542)
T PRK05858 127 KFAATAQ--SAENAGRLVDQALQAAVTPHRGPVFVDFPM 163 (542)
T ss_pred ceEEEeC--CHHHHHHHHHHHHHHHcCCCCCeEEEEcCh
Confidence 6777776 7888999999998877765 5899998864
|
|
| >PRK07282 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=92.59 E-value=0.85 Score=48.34 Aligned_cols=108 Identities=19% Similarity=0.161 Sum_probs=72.3
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|-|.|... +.-.++++..|=|.++ ..-++..|..-++|||+|.-........ .......|....++.+-
T Consensus 61 ~~~Adgyar~t---g~~gv~~~t~GPG~~n---~~~gla~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~~~~~it 132 (566)
T PRK07282 61 LHEAEGYAKST---GKLGVAVVTSGPGATN---AITGIADAMSDSVPLLVFTGQVARAGIG--KDAFQEADIVGITMPIT 132 (566)
T ss_pred HHHHHHHHHHh---CCCeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecccccccCC--CCCccccChhchhcCCC
Confidence 44566666543 4445677777999886 3456777888899999998653321111 11111124455666666
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~-gP~lIe~~t 266 (380)
-...+|+ +++++...+.+|+..++.+. ||+.|++-.
T Consensus 133 k~s~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~ 169 (566)
T PRK07282 133 KYNYQIR--ETADIPRIITEAVHIATTGRPGPVVIDLPK 169 (566)
T ss_pred ceeEEcC--CHHHHHHHHHHHHHHHhcCCCCeEEEeCCh
Confidence 6666776 88899999999999888874 999998765
|
|
| >PRK08327 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=92.49 E-value=0.69 Score=49.07 Aligned_cols=110 Identities=15% Similarity=0.141 Sum_probs=72.8
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCccccccc----c--cccCC-cCHH
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPI----S--DQFRS-DGAV 221 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~----~--~~~~~-~~~~ 221 (380)
.-+|-|.|.. .++-.++++..|=|.++ ..-++..|..-+.|||+|+-.-........ . ..+.. .|..
T Consensus 63 ~~~Adgyar~---tgk~gv~~~t~GPG~~N---~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~qe~~d~~ 136 (569)
T PRK08327 63 ISMAHGYALV---TGKPQAVMVHVDVGTAN---ALGGVHNAARSRIPVLVFAGRSPYTEEGELGSRNTRIHWTQEMRDQG 136 (569)
T ss_pred HHHHHHHHHh---hCCCeEEEEecCHHHHH---HHHHHHHHhhcCCCEEEEeccCCccccccccccccCcccchhhhhHH
Confidence 3456666554 23445667777888886 446688888889999999975432221100 0 01111 2555
Q ss_pred HHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016903 222 VKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 222 ~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~-~gP~lIe~~t 266 (380)
..++.+--...+|+ +++++..++.+|+..++.+ .||+.|++-.
T Consensus 137 ~~~~~vtk~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPV~i~iP~ 180 (569)
T PRK08327 137 GLVREYVKWDYEIR--RGDQIGEVVARAIQIAMSEPKGPVYLTLPR 180 (569)
T ss_pred HHHhhhhhhhcccC--CHHHHHHHHHHHHHHHhcCCCCCEEEECcH
Confidence 66666655566777 8899999999999888876 6999998863
|
|
| >TIGR02720 pyruv_oxi_spxB pyruvate oxidase | Back alignment and domain information |
|---|
Probab=92.46 E-value=1.1 Score=47.59 Aligned_cols=108 Identities=14% Similarity=0.013 Sum_probs=70.1
Q ss_pred HHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCc
Q 016903 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|-|.|.+ .+.-.++++..|=|.++ ..-++..|...++|||+|+-.-...... .......+....++.+--
T Consensus 52 ~~Adgyar~---tgk~gv~~~t~GPG~~n---~~~~i~~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~id~~~~~~~vtk 123 (575)
T TIGR02720 52 LAAAADAKL---TGKIGVCFGSAGPGATH---LLNGLYDAKEDHVPVLALVGQVPTTGMN--MDTFQEMNENPIYADVAV 123 (575)
T ss_pred HHHHHHHHh---hCCceEEEeCCCCcHHH---HHHHHHHHhhcCCCEEEEecCCccccCC--CCCcceechhhhhhhcce
Confidence 345565543 34456677777888886 4456777888899999998654322111 111111244455666554
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016903 230 RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~ 267 (380)
...+|. +++.+...+.+|+..|....||+.|++-..
T Consensus 124 ~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP~D 159 (575)
T TIGR02720 124 YNRTAM--TAESLPHVIDEAIRRAYAHNGVAVVTIPVD 159 (575)
T ss_pred EEEEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEECcc
Confidence 555665 788888888888888778889999988643
|
Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name. |
| >PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.77 Score=46.26 Aligned_cols=115 Identities=17% Similarity=0.186 Sum_probs=73.7
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cccccccccccCCcCH-HHHHhh
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISDQFRSDGA-VVKGRA 226 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~~~~~~~~~~-~~~a~a 226 (380)
+.+|+|+++| +.++++.+.=+++. ..+|.+.+|+-..+|+|+++.+-. -+...++... ..|+ ..+..+
T Consensus 60 ~~~a~GAs~a------G~Ra~taTSg~G~~--lm~E~~~~a~~~e~P~V~~~~~R~GpstG~p~~~~--q~D~~~~~~~~ 129 (375)
T PRK09627 60 ISVALGASMS------GVKSMTASSGPGIS--LKAEQIGLGFIAEIPLVIVNVMRGGPSTGLPTRVA--QGDVNQAKNPT 129 (375)
T ss_pred HHHHHHHHhh------CCCEEeecCCchHH--HHhhHHHHHHhccCCEEEEEeccCCCcCCCCCccc--hHHHHHHhcCC
Confidence 6778888877 23455555434443 367999999999999888776643 1111121111 1122 223332
Q ss_pred cC-ceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCC
Q 016903 227 YG-VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS 275 (380)
Q Consensus 227 ~G-~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~ 275 (380)
+| .+.+.+.-.|+.++++....|++.+.+..-|++|-..+ +. +|+..
T Consensus 130 hgd~~~ivl~p~~~qEa~d~t~~Af~lAE~~~~PViv~~D~-~l-sh~~~ 177 (375)
T PRK09627 130 HGDFKSIALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDE-TV-GHMYG 177 (375)
T ss_pred CCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHcCceEEecch-HH-hCCee
Confidence 32 23345666799999999999999988889999998888 44 67643
|
|
| >KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.39 E-value=0.77 Score=46.48 Aligned_cols=149 Identities=17% Similarity=0.196 Sum_probs=84.9
Q ss_pred CCCHHHHHHHhhcCCC-----CCCCCCCCccccCC---CCCCccccCcccccchHHHHHHHHHhhhcCCCCeeEEEeCcc
Q 016903 104 GFSMQEFANQCFGNKA-----DYGKGRQMPIHYGS---NKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDG 175 (380)
Q Consensus 104 G~~~~~~~~e~~g~~~-----~~~~G~~~~~H~~~---~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG 175 (380)
|.+-.++|.+++.+.. |+-.|.-++.|-.. ...++.- .-+=-.+.=+|-|.|.+. ++..+|++..|-|
T Consensus 90 g~tGg~If~emm~rqnV~tVFgYPGGAilpv~dAi~rS~~f~fvL-PrHEQgaghaAegYaR~s---gKPGvvlvTSGPG 165 (675)
T KOG4166|consen 90 GRTGGDIFVEMMERQNVETVFGYPGGAILPVHDAITRSSSFRFVL-PRHEQGAGHAAEGYARSS---GKPGVVLVTSGPG 165 (675)
T ss_pred CCchhHHHHHHHHhcCCceEeecCCcceeehHhhhhcCccccccc-cccccccchhhhhhhhhc---CCCcEEEEecCCC
Confidence 4444567777666543 34466667776332 1222211 111111223455666554 5678999999999
Q ss_pred ccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhc-CceEEEEeCCCHHHHHHHHHHHHHHhh
Q 016903 176 GTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAI 254 (380)
Q Consensus 176 ~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~-G~~~~~VdG~D~~av~~a~~~a~~~ar 254 (380)
+++ +.--|.-|-.-++|+|++- .+..-+.-..+.+...++...-+++ -|++.. .|++++...+.+|++.|-
T Consensus 166 ATN---vvtp~ADAlaDg~PlVvft--GQVptsaIGtDAFQEadiVgisRScTKwNvmV---kdVedlPrrI~EAFeiAT 237 (675)
T KOG4166|consen 166 ATN---VVTPLADALADGVPLVVFT--GQVPTSAIGTDAFQEADIVGISRSCTKWNVMV---KDVEDLPRRIEEAFEIAT 237 (675)
T ss_pred ccc---ccchhhHHhhcCCcEEEEe--cccchhhcccchhccCCeeeeeeccceeheee---ecHHHhhHHHHHHhhhhc
Confidence 997 3344666667788977654 2221111111222223444444444 344433 378899999999998877
Q ss_pred cc-CCcEEEEE
Q 016903 255 GE-GRPILIEA 264 (380)
Q Consensus 255 ~~-~gP~lIe~ 264 (380)
.+ .||+|+++
T Consensus 238 SGRPGPVLVDl 248 (675)
T KOG4166|consen 238 SGRPGPVLVDL 248 (675)
T ss_pred cCCCCCeEeeC
Confidence 66 48999976
|
|
| >cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins | Back alignment and domain information |
|---|
Probab=92.26 E-value=1 Score=40.03 Aligned_cols=99 Identities=14% Similarity=0.057 Sum_probs=58.3
Q ss_pred chHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHH-HHHHHc--------CCCEEEEEEcCCcccccccccccCCc
Q 016903 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAAL-NFSAVT--------EAPVIFICRNNGWAISTPISDQFRSD 218 (380)
Q Consensus 148 ~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal-~~A~~~--------~Lpvi~vv~NN~~~~~~~~~~~~~~~ 218 (380)
.++.|.|+|+. +.++|+.+.=+.|.. -.+|-+ +-++.+ ++||++++..-+++..+++. +..
T Consensus 56 ~vg~AaGlA~~------G~~pi~~~~~a~Fl~-ra~dQi~~~~a~~~~~~~~~~~~pv~i~~~~gg~~~~G~th---s~~ 125 (167)
T cd07036 56 IVGLAVGAAMN------GLRPIVEIMFADFAL-PAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGGGIGGGAQH---SQS 125 (167)
T ss_pred HHHHHHHHHHc------CCEEEEEeehHHHHH-HHHHHHHHHHHHHHHhcCCCccCCEEEEEeCCCCCCcChhh---hhh
Confidence 35556666653 235555433344433 233433 334443 58999999766655444431 223
Q ss_pred CHHHHHhhc-CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 016903 219 GAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (380)
Q Consensus 219 ~~~~~a~a~-G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe 263 (380)
++ ...+++ |+.++.-. |+.+....++.++++ ++|+++-
T Consensus 126 ~~-a~lr~iPg~~V~~Ps--d~~e~~~~l~~~~~~----~~P~~~~ 164 (167)
T cd07036 126 LE-AWFAHIPGLKVVAPS--TPYDAKGLLKAAIRD----DDPVIFL 164 (167)
T ss_pred HH-HHHhcCCCCEEEeeC--CHHHHHHHHHHHHhC----CCcEEEE
Confidence 33 445555 66666655 899999999998863 6899874
|
Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain |
| >PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=92.21 E-value=1.1 Score=47.53 Aligned_cols=108 Identities=19% Similarity=0.179 Sum_probs=71.0
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+. +.-.++++..|=|.++ ..-++..|..-+.|||+|.-.-...... .......|....++.+-
T Consensus 58 ~~~Adgyar~t---g~~~v~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~~~~~it 129 (561)
T PRK06048 58 AHAADGYARAT---GKVGVCVATSGPGATN---LVTGIATAYMDSVPIVALTGQVPRSMIG--NDAFQEADITGITMPIT 129 (561)
T ss_pred HHHHHHHHHHh---CCCeEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEeccCCccccC--CCCccccchhhhccCcc
Confidence 45566666553 4445667777888886 3456777888899999998532221111 11111224555666665
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~-~gP~lIe~~t 266 (380)
-...+|. ++.++...+.+|+..++.+ .||+.|++-.
T Consensus 130 k~s~~v~--~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~ 166 (561)
T PRK06048 130 KHNYLVQ--DAKDLPRIIKEAFHIASTGRPGPVLIDLPK 166 (561)
T ss_pred eEEEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEecCh
Confidence 5566676 8899999999999888876 4899998854
|
|
| >PRK08617 acetolactate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=92.21 E-value=0.96 Score=47.68 Aligned_cols=107 Identities=16% Similarity=0.048 Sum_probs=70.3
Q ss_pred HHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCc
Q 016903 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|.|.|.+ .+.-.++++..|=|.++ ..-++..|..-+.|||+|.-......... ......|....++.+--
T Consensus 56 ~~A~gyar~---tg~~gv~~vt~GpG~~N---~l~gl~~A~~~~~PvlvisG~~~~~~~~~--~~~q~~d~~~l~~~~tk 127 (552)
T PRK08617 56 FMAAAIGRL---TGKPGVVLVTSGPGVSN---LATGLVTATAEGDPVVAIGGQVKRADRLK--RTHQSMDNVALFRPITK 127 (552)
T ss_pred HHHHhHhhh---cCCCEEEEECCCCcHhH---hHHHHHHHhhcCCCEEEEecCCcccccCC--CCccccchhhhhhhhcc
Confidence 345555543 23345566666888886 34567778888999999985333211111 11112345566777766
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016903 230 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~a~~~ar~~-~gP~lIe~~t 266 (380)
...+|+ +++++...+.+|+..+..+ .||+.|++-.
T Consensus 128 ~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~ 163 (552)
T PRK08617 128 YSAEVQ--DPDNLSEVLANAFRAAESGRPGAAFVSLPQ 163 (552)
T ss_pred eEEEeC--CHHHHHHHHHHHHHHHccCCCCcEEEeChh
Confidence 677776 8999999999999888776 4899998864
|
|
| >TIGR02418 acolac_catab acetolactate synthase, catabolic | Back alignment and domain information |
|---|
Probab=92.02 E-value=1.2 Score=46.75 Aligned_cols=108 Identities=19% Similarity=0.043 Sum_probs=70.0
Q ss_pred HHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCc
Q 016903 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|.|.|.. .+.-.++++..|=|.++ ..-++..|..-+.|||+|+-.-...... ...+...+....++.+--
T Consensus 50 ~~Adgyar~---tg~~gv~~~t~GpG~~n---~l~gl~~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~~d~~~~~~~~tk 121 (539)
T TIGR02418 50 FMAQAVGRI---TGKPGVALVTSGPGCSN---LVTGLATANSEGDPVVAIGGQVKRADLL--KLTHQSMDNVALFRPITK 121 (539)
T ss_pred HHHHHHHHH---hCCceEEEECCCCCHhH---HHHHHHHHhhcCCCEEEEeCCCcccccc--cCcccccchhhhhhccee
Confidence 355565543 33445667777888886 3456777888899999998643322111 111112345566666544
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 016903 230 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 267 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~a~~~ar~~-~gP~lIe~~t~ 267 (380)
...+++ +++++...+.+|+..+..+ .||+.|++-..
T Consensus 122 ~~~~i~--~~~~~~~~~~~A~~~a~~~~~GPV~l~iP~d 158 (539)
T TIGR02418 122 YSAEVQ--DPDALSEVVANAFRAAESGKPGAAFVSLPQD 158 (539)
T ss_pred eeeecC--CHHHHHHHHHHHHHHHhcCCCCCEEEEcChh
Confidence 555665 8899999999999887776 48999988653
|
Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family. |
| >TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit | Back alignment and domain information |
|---|
Probab=92.00 E-value=0.76 Score=48.77 Aligned_cols=109 Identities=18% Similarity=0.223 Sum_probs=71.2
Q ss_pred chHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccc-cccccccCCcCHH-HHHh
Q 016903 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIS-TPISDQFRSDGAV-VKGR 225 (380)
Q Consensus 148 ~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~-~~~~~~~~~~~~~-~~a~ 225 (380)
.+.+|+|+++| +.++++.+-=.+++ ...|.|.+|+-..+|+|+++.+..--.+ .++. ....|+. .+..
T Consensus 249 A~~~a~GAs~a------G~Ra~taTSg~Gl~--lm~E~l~~a~~~~~P~Vi~~~~R~gpstg~~t~--~eq~D~~~~~~~ 318 (562)
T TIGR03710 249 AINMAIGASYA------GARAMTATSGPGFA--LMTEALGLAGMTETPLVIVDVQRGGPSTGLPTK--TEQSDLLFALYG 318 (562)
T ss_pred HHHHHHhHHhc------CCceeecCCCCChh--HhHHHHhHHHhccCCEEEEEcccCCCCCCCCCC--ccHHHHHHHhcC
Confidence 36778888876 23455555444443 5789999999999998887766542211 1111 1111221 2222
Q ss_pred h---cCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 226 A---YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 226 a---~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
+ ++|.+ +...|+.++++....|++.+.+..-|+++-...+.
T Consensus 319 ~hgd~~~iv--l~p~~~qEa~d~~~~Af~lAe~~~~PViv~~D~~l 362 (562)
T TIGR03710 319 GHGEFPRIV--LAPGSPEECFYLAIEAFNLAEKYQTPVIVLSDQYL 362 (562)
T ss_pred CCCCcCceE--EcCCCHHHHHHHHHHHHHHHHHhcCCEEEEechHH
Confidence 2 23544 45559999999999999998889999999988874
|
The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions. |
| >PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2 | Back alignment and domain information |
|---|
Probab=91.88 E-value=2.2 Score=38.00 Aligned_cols=106 Identities=17% Similarity=0.099 Sum_probs=60.8
Q ss_pred chHHHHHHHHHhhhcCC-CCeeEEEeCccccC-cchHHHHHH-HHHHcCCCEEEEEEcCCc--ccccccccccCCcCHHH
Q 016903 148 QLPHAVGAAYALKMDRK-DACAVTYFGDGGTS-EGDFHAALN-FSAVTEAPVIFICRNNGW--AISTPISDQFRSDGAVV 222 (380)
Q Consensus 148 ~lp~A~G~A~A~k~~~~-~~~vv~~~GDG~~~-eG~~~Eal~-~A~~~~Lpvi~vv~NN~~--~~~~~~~~~~~~~~~~~ 222 (380)
.+++|.|+|++ ++ ..+++..+++=... +-..++.+. ..+..++|+. |+..-++ +..+++. .+..+ ..
T Consensus 60 ~vg~a~GlA~~----G~~~~~~~~~f~~F~~~~q~r~~~~~~~~~~~~~~~v~-v~~~~g~~~~~~G~tH--~s~~d-~~ 131 (178)
T PF02779_consen 60 MVGMAAGLALA----GGLRPPVESTFADFLTPAQIRAFDQIRNDMAYGQLPVP-VGTRAGLGYGGDGGTH--HSIED-EA 131 (178)
T ss_dssp HHHHHHHHHHH----SSSEEEEEEEEGGGGGGGHHHHHHHHHHHHHHHTS-EE-EEEEESGGGSTTGTTT--SSSSH-HH
T ss_pred ccceeeeeeec----ccccceeEeeccccccccchhhhhhhhhhhhcccceec-ceeecCcccccccccc--ccccc-cc
Confidence 36677777765 32 23344444433220 123445555 6777899988 5555544 3333333 23333 34
Q ss_pred HHhhc-CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 016903 223 KGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEAL 265 (380)
Q Consensus 223 ~a~a~-G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~ 265 (380)
..+++ |+.++.-. |+.++...++.+++. +.++|++|-..
T Consensus 132 ~~~~iPg~~v~~Ps--d~~e~~~~l~~a~~~--~~~~P~~ir~~ 171 (178)
T PF02779_consen 132 ILRSIPGMKVVVPS--DPAEAKGLLRAAIRR--ESDGPVYIREP 171 (178)
T ss_dssp HHHTSTTEEEEE-S--SHHHHHHHHHHHHHS--SSSSEEEEEEE
T ss_pred ccccccccccccCC--CHHHHHHHHHHHHHh--CCCCeEEEEee
Confidence 44444 77777655 999999999999862 24799988653
|
2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B .... |
| >PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=91.84 E-value=1.3 Score=44.84 Aligned_cols=113 Identities=19% Similarity=0.206 Sum_probs=74.5
Q ss_pred chHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhc
Q 016903 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 227 (380)
Q Consensus 148 ~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~ 227 (380)
.+.+++|++++ +.++++.+-=.+++ ..+|.|..|+-.++|+|+++-|-..+. +..-.....|+ .-.+..
T Consensus 62 A~~~~~GAs~a------GaRa~TaTS~~Gl~--lm~E~l~~aag~~lP~V~vv~~R~~~~--p~~i~~d~~D~-~~~rd~ 130 (394)
T PRK08367 62 AISACVGASAA------GVRTFTATASQGLA--LMHEVLFIAAGMRLPIVMAIGNRALSA--PINIWNDWQDT-ISQRDT 130 (394)
T ss_pred HHHHHHHHHhh------CCCeEeeeccchHH--HHhhHHHHHHHccCCEEEEECCCCCCC--CCCcCcchHHH-Hhcccc
Confidence 36778888876 23455544333332 468999999999999999886654432 22211111122 123456
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHhhccC--CcEEEEEEeecCCCCCC
Q 016903 228 GVRSIRVDGNDALAIYSAVHAAREMAIGEG--RPILIEALTYRVGHHTT 274 (380)
Q Consensus 228 G~~~~~VdG~D~~av~~a~~~a~~~ar~~~--gP~lIe~~t~R~~gHs~ 274 (380)
||-.+.. .|+.++++-...|.+.+.+.+ -|+++-...||. +|+.
T Consensus 131 g~~~~~a--~~~QEa~D~~~~Af~lAE~~~~~~Pviv~~Dgf~~-sH~~ 176 (394)
T PRK08367 131 GWMQFYA--ENNQEALDLILIAFKVAEDERVLLPAMVGFDAFIL-THTV 176 (394)
T ss_pred CeEEEeC--CCHHHHHHHHHHHHHHHHHhCcCCCEEEEechhhh-cCcc
Confidence 7666554 699999999999998877443 799999999886 4653
|
|
| >PLN02573 pyruvate decarboxylase | Back alignment and domain information |
|---|
Probab=91.77 E-value=1.1 Score=47.54 Aligned_cols=109 Identities=17% Similarity=0.098 Sum_probs=68.8
Q ss_pred HHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccc---cccccCCcC---HHHH
Q 016903 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTP---ISDQFRSDG---AVVK 223 (380)
Q Consensus 150 p~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~---~~~~~~~~~---~~~~ 223 (380)
-+|-|.|.+. + ..++++..|=|.++ ..-++..|..-+.|||+|.-.-....... .+......+ ..+.
T Consensus 68 ~mAdgyaR~t---g-~gv~~~t~GpG~~n---~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (578)
T PLN02573 68 YAADGYARAR---G-VGACVVTFTVGGLS---VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRC 140 (578)
T ss_pred HHHHHHHHHh---C-CCeEEEecCccHHH---HHHHHHHHHHhCCCEEEEECCCChhhhhcCceeeeecCCCChHHHHHH
Confidence 3555666543 4 45677777888876 33457778888899999986443321110 000000011 1244
Q ss_pred HhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016903 224 GRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 224 a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~ 267 (380)
++.+--...+|. ++..+...+++|+..|+.+.||+.|++-..
T Consensus 141 ~~~itk~s~~v~--~~~~~~~~l~~A~~~A~~~~gPV~l~iP~D 182 (578)
T PLN02573 141 FQTVTCYQAVIN--NLEDAHELIDTAISTALKESKPVYISVSCN 182 (578)
T ss_pred hhceEEEEEEeC--CHHHHHHHHHHHHHHHHhcCCCEEEEeehh
Confidence 555555566676 888888889999988888889999988543
|
|
| >PRK08527 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=91.74 E-value=1.2 Score=47.01 Aligned_cols=108 Identities=20% Similarity=0.155 Sum_probs=70.1
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|-|.|+. .+.-.++++..|=|.++ ..-++..|..-+.|||+|.-.-...... .......|....++.+-
T Consensus 54 ~~~Adgyar~---tg~~gv~~~t~GpG~~n---~~~gla~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~~~~~~t 125 (563)
T PRK08527 54 VHAADGYARA---SGKVGVAIVTSGPGFTN---AVTGLATAYMDSIPLVLISGQVPNSLIG--TDAFQEIDAVGISRPCV 125 (563)
T ss_pred HHHHHHHHhh---hCCCEEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCCccccC--CCCCcccchhhhhhccc
Confidence 4455666544 24445667777888886 3456777888899999998532211100 01111124445666665
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~-gP~lIe~~t 266 (380)
-...+|+ +++++..++++|+..++.+. ||+.|++-.
T Consensus 126 k~s~~v~--~~~~i~~~l~~A~~~a~s~~~GPV~l~iP~ 162 (563)
T PRK08527 126 KHNYLVK--SIEELPRILKEAFYIARSGRPGPVHIDIPK 162 (563)
T ss_pred ceEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCH
Confidence 5556665 99999999999998888765 899998864
|
|
| >PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=91.57 E-value=1.4 Score=44.96 Aligned_cols=112 Identities=18% Similarity=0.173 Sum_probs=74.1
Q ss_pred chHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhc
Q 016903 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 227 (380)
Q Consensus 148 ~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~ 227 (380)
.+.+++|++++ +.++++.+-=.+++ ..+|.|..|+-..+|+|+++.+-+.....++ .....|+.. ++.-
T Consensus 68 A~~~~~GAs~a------GaRa~TaTS~~Gl~--lm~E~l~~aa~~~~P~V~~~~~R~~~~~~~i--~~d~~D~~~-~r~~ 136 (407)
T PRK09622 68 AMSACVGAAAA------GGRVATATSSQGLA--LMVEVLYQASGMRLPIVLNLVNRALAAPLNV--NGDHSDMYL-SRDS 136 (407)
T ss_pred HHHHHHHHHhh------CcCEEeecCcchHH--HHhhHHHHHHHhhCCEEEEEeccccCCCcCC--CchHHHHHH-HhcC
Confidence 36778888876 23455554433343 4789999999999998888887775321111 111122322 2444
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHhhcc--CCcEEEEEEeecCCCCC
Q 016903 228 GVRSIRVDGNDALAIYSAVHAAREMAIGE--GRPILIEALTYRVGHHT 273 (380)
Q Consensus 228 G~~~~~VdG~D~~av~~a~~~a~~~ar~~--~gP~lIe~~t~R~~gHs 273 (380)
||.++ ...++.++++....|.+.+.+. .-|+++-..+++. +|.
T Consensus 137 g~ivl--~p~s~QEa~d~~~~Af~lAE~~~~~~Pviv~~Dg~~~-sh~ 181 (407)
T PRK09622 137 GWISL--CTCNPQEAYDFTLMAFKIAEDQKVRLPVIVNQDGFLC-SHT 181 (407)
T ss_pred CeEEE--eCCCHHHHHHHHHHHHHHHHHhccCCCEEEEechhhh-hCc
Confidence 55554 5559999999999999888776 7899998887653 454
|
|
| >CHL00099 ilvB acetohydroxyacid synthase large subunit | Back alignment and domain information |
|---|
Probab=91.47 E-value=1.4 Score=46.92 Aligned_cols=108 Identities=22% Similarity=0.188 Sum_probs=69.8
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.. .+.-.++++..|=|.++ ..-++..|..-+.|||+|+-.-...... .......|....++.+-
T Consensus 64 ~~~Adgyar~---tg~~gv~~~t~GPG~~N---~l~gl~~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~~d~~~~~~~~t 135 (585)
T CHL00099 64 AHAADGYARS---TGKVGVCFATSGPGATN---LVTGIATAQMDSVPLLVITGQVGRAFIG--TDAFQEVDIFGITLPIV 135 (585)
T ss_pred HHHHHHHHHh---cCCcEEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCCccccC--CCCccccchhhhhcCce
Confidence 3455566544 24445666677888886 3456777888899999998543211100 01111124455666665
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~-gP~lIe~~t 266 (380)
-...+|. +++++...+++|+..++.+. ||+.|++-.
T Consensus 136 k~~~~v~--~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~ 172 (585)
T CHL00099 136 KHSYVVR--DARDISRIVAEAFYIAKHGRPGPVLIDIPK 172 (585)
T ss_pred eEEEEeC--CHHHHHHHHHHHHHHHccCCCCeEEEecCh
Confidence 5666777 88999999999998887764 899998764
|
|
| >PRK09124 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.37 E-value=1.6 Score=46.29 Aligned_cols=107 Identities=14% Similarity=-0.028 Sum_probs=65.6
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+. +.-.++++..|=|.++ ..-++..|..-++|||+|.-+-....... ......+..+.++.+-
T Consensus 54 ~~~Adgyar~t---g~~gv~~~t~GpG~~n---~~~gi~~A~~~~~Pvl~i~G~~~~~~~~~--~~~Q~~d~~~l~~~it 125 (574)
T PRK09124 54 AFAAGAEAQLT---GELAVCAGSCGPGNLH---LINGLFDCHRNHVPVLAIAAHIPSSEIGS--GYFQETHPQELFRECS 125 (574)
T ss_pred HHHHHHHHHhh---CCcEEEEECCCCCHHH---HHHHHHHHhhcCCCEEEEecCCccccCCC--CCccccChhhhcccce
Confidence 34566666542 2223333345777775 23457778888999999986543221111 1111124445566554
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEAL 265 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~ 265 (380)
....+|+ +++.+...+++|+..+....||+.|++-
T Consensus 126 k~~~~v~--~~~~~~~~i~~A~~~A~~~~gPV~l~iP 160 (574)
T PRK09124 126 HYCELVS--NPEQLPRVLAIAMRKAILNRGVAVVVLP 160 (574)
T ss_pred eeeEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 4555666 8888888888888888777899999874
|
|
| >TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=91.30 E-value=1.3 Score=47.50 Aligned_cols=102 Identities=10% Similarity=0.069 Sum_probs=60.0
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCccc-ccccccccCCcCHHHHHhhc
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI-STPISDQFRSDGAVVKGRAY 227 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~-~~~~~~~~~~~~~~~~a~a~ 227 (380)
+++|.|+|++ +.++|+.+ =+.|.+=.+-+-.+.++..++||++++...++.. .+++... ..+++-...--
T Consensus 365 vg~AaGlA~~------G~~Pvv~~-~a~Fl~ra~dQi~~~~a~~~lpV~i~~~~~G~~g~dG~tH~~--~~dia~lr~iP 435 (617)
T TIGR00204 365 VTFAAGMAIE------GYKPFVAI-YSTFLQRAYDQVVHDVCIQKLPVLFAIDRAGIVGADGETHQG--AFDISYLRCIP 435 (617)
T ss_pred HHHHHHHHHC------CCEEEEEe-cHHHHHHHHHHHHHHHHhcCCCEEEEEECCCcCCCCCccccc--chHHHHHhcCC
Confidence 4556666542 23444444 4566543333334667889999999998777641 2333222 23333222222
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016903 228 GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 228 G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~ 264 (380)
|+.++.-. |+.++...++.|++. .++|++|..
T Consensus 436 gl~V~~Ps--d~~e~~~~l~~a~~~---~~~Pv~ir~ 467 (617)
T TIGR00204 436 NMVIMAPS--DENELRQMLYTGYHY---DDGPIAVRY 467 (617)
T ss_pred CcEEEeeC--CHHHHHHHHHHHHhC---CCCCEEEEE
Confidence 66665544 889999999998853 348998844
|
DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP). |
| >PRK07092 benzoylformate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=90.94 E-value=1.7 Score=45.60 Aligned_cols=109 Identities=17% Similarity=0.063 Sum_probs=69.4
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+. +...++++..|=|.++ ..-++..|..-+.|||+|+-.-.+........+ ...+....++.+-
T Consensus 61 ~~~Adgyar~t---g~~~v~~vt~gpG~~N---~~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~-~~~d~~~l~~~~t 133 (530)
T PRK07092 61 VGMADGYAQAT---GNAAFVNLHSAAGVGN---AMGNLFTAFKNHTPLVITAGQQARSILPFEPFL-AAVQAAELPKPYV 133 (530)
T ss_pred HHHHHHHHHHh---CCceEEEeccCchHHH---HHHHHHHHhhcCCCEEEEecCCcccccCccchh-cccCHHHhhcccc
Confidence 34667776543 4445566667888775 446677788889999988864333221110000 1124445565554
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~-gP~lIe~~t 266 (380)
-...+|. +++.+.+.+.+|+..++.+. ||+.|++-.
T Consensus 134 k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~ 170 (530)
T PRK07092 134 KWSIEPA--RAEDVPAAIARAYHIAMQPPRGPVFVSIPY 170 (530)
T ss_pred cceeecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEccH
Confidence 4455564 88999999999998887775 799998864
|
|
| >PRK06154 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.69 E-value=2.1 Score=45.34 Aligned_cols=93 Identities=11% Similarity=0.043 Sum_probs=62.8
Q ss_pred CeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCCCHHHHHHH
Q 016903 166 ACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSA 245 (380)
Q Consensus 166 ~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a 245 (380)
.++++..|=|.++ ..-++..|..-+.|||+|+-........ .....+....++.+--...+|+ +++++.+.
T Consensus 83 gv~~~t~GPG~~N---~~~gla~A~~~~~Pvl~i~G~~~~~~~~----~~~~~d~~~~~~~vtk~~~~v~--~~~~~~~~ 153 (565)
T PRK06154 83 GVFAVQYGPGAEN---AFGGVAQAYGDSVPVLFLPTGYPRGSTD----VAPNFESLRNYRHITKWCEQVT--LPDEVPEL 153 (565)
T ss_pred EEEEECCCccHHH---HHHHHHHHhhcCCCEEEEeCCCCccccc----CCCCcchhhhHhhcceeEEECC--CHHHHHHH
Confidence 3444556888886 4456777888899999998544322110 0011233455666655666677 89999999
Q ss_pred HHHHHHHhhcc-CCcEEEEEEee
Q 016903 246 VHAAREMAIGE-GRPILIEALTY 267 (380)
Q Consensus 246 ~~~a~~~ar~~-~gP~lIe~~t~ 267 (380)
+.+|+..++.+ .||+.|++-..
T Consensus 154 i~~A~~~A~s~~~GPV~l~iP~D 176 (565)
T PRK06154 154 MRRAFTRLRNGRPGPVVLELPVD 176 (565)
T ss_pred HHHHHHHHhcCCCceEEEecchH
Confidence 99999888875 58999988654
|
|
| >TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase | Back alignment and domain information |
|---|
Probab=90.56 E-value=1 Score=46.02 Aligned_cols=107 Identities=18% Similarity=0.094 Sum_probs=65.1
Q ss_pred HHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCc
Q 016903 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|-|.|.+ .+.-.++++..|=|.++ ..-++..|-.-+.|||+|+-.-....... ......+..+.++.+--
T Consensus 52 ~mAdgyar~---tg~~gv~~~t~GpG~~N---~l~gl~~A~~~~~Pvl~i~g~~~~~~~~~--~~~q~~d~~~~~~~~tk 123 (432)
T TIGR00173 52 FFALGLAKA---SGRPVAVVCTSGTAVAN---LLPAVIEASYSGVPLIVLTADRPPELRGC--GANQTIDQPGLFGSYVR 123 (432)
T ss_pred HHHHHHHhc---cCCCEEEEECCcchHhh---hhHHHHHhcccCCcEEEEeCCCCHHHhCC--CCCcccchhhHHhhccc
Confidence 356666654 34455677777888886 34567777788899999986433211111 11112345556666654
Q ss_pred eEEEEeCCCHHH------HHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016903 230 RSIRVDGNDALA------IYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 230 ~~~~VdG~D~~a------v~~a~~~a~~~ar~~-~gP~lIe~~t 266 (380)
...+|. ++.. +...+++|+..+..+ .||+.|++-.
T Consensus 124 ~~~~v~--~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~ 165 (432)
T TIGR00173 124 WSLDLP--LPEADEPLAYLRSTVDRAVAQAQGPPPGPVHINVPF 165 (432)
T ss_pred eeeeCC--CCCccccHHHHHHHHHHHHHHhhCCCCCCEEEeCCC
Confidence 555554 3333 667777777766664 4899999864
|
2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis. |
| >PRK06546 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.33 E-value=2 Score=45.64 Aligned_cols=108 Identities=18% Similarity=0.030 Sum_probs=66.9
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|-|.|.+. +.-.++++..|=|.++ ..-++..|..-+.|||+|.-.-....... ..+...+....++.+-
T Consensus 54 ~~mAdgyar~t---gk~~v~~v~~GpG~~N---~~~gl~~A~~~~~Pvl~I~G~~~~~~~~~--~~~Qe~d~~~l~~~~t 125 (578)
T PRK06546 54 AFAAAAEAQLT---GKLAVCAGSCGPGNLH---LINGLYDAHRSGAPVLAIASHIPSAQIGS--GFFQETHPDRLFVECS 125 (578)
T ss_pred HHHHHhHHHhh---CCceEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEeCCCCccccCC--CCccccChhhhcccce
Confidence 34566665542 2334445556788776 23457778888999999985332211110 0111123345555554
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
-...+|. +++.+...+.+|+..+....||+.|++-.
T Consensus 126 k~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~lP~ 161 (578)
T PRK06546 126 GYCEMVS--SAEQAPRVLHSAIQHAVAGGGVSVVTLPG 161 (578)
T ss_pred eeEeEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEcCh
Confidence 4455666 88889999999998888888999998764
|
|
| >TIGR00232 tktlase_bact transketolase, bacterial and yeast | Back alignment and domain information |
|---|
Probab=89.40 E-value=2.4 Score=45.93 Aligned_cols=80 Identities=18% Similarity=0.169 Sum_probs=54.0
Q ss_pred ccCcchHHHHHHHHHHcCCCEEEEEEcCCccc--ccccccccCCcCHHHHHhhc-CceEEEEeCCCHHHHHHHHHHHHHH
Q 016903 176 GTSEGDFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREM 252 (380)
Q Consensus 176 ~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~--~~~~~~~~~~~~~~~~a~a~-G~~~~~VdG~D~~av~~a~~~a~~~ 252 (380)
.|.+ -.++++.+++..++||++|....+++. .+++. .+..+++- .++. |+.++.-- |..++..+++.+++.
T Consensus 430 ~F~~-r~~~~ir~~a~~~lpV~~v~th~g~~~G~dG~TH--q~iedia~-lr~iPn~~v~~Pa--D~~E~~~~~~~a~~~ 503 (653)
T TIGR00232 430 MFVD-YARPAIRLAALMKLPVIYVYTHDSIGVGEDGPTH--QPIEQLAS-LRAIPNLSVWRPC--DGNETAAAWKYALES 503 (653)
T ss_pred HHHH-HHHHHHHHHHhcCCCEEEEEeCCccCCCCCCccc--CCHHHHHH-HhcCCCCEEEeeC--CHHHHHHHHHHHHhc
Confidence 5544 567888999999999999998766653 34443 22333332 3333 66666644 888999999988842
Q ss_pred hhccCCcEEEEE
Q 016903 253 AIGEGRPILIEA 264 (380)
Q Consensus 253 ar~~~gP~lIe~ 264 (380)
.++|++|-.
T Consensus 504 ---~~gP~~irl 512 (653)
T TIGR00232 504 ---QDGPTALIL 512 (653)
T ss_pred ---CCCcEEEEE
Confidence 478998854
|
This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous. |
| >cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family | Back alignment and domain information |
|---|
Probab=89.30 E-value=6 Score=37.97 Aligned_cols=84 Identities=17% Similarity=0.036 Sum_probs=58.2
Q ss_pred eeEEEeCccc--cCcchHHHHHHHHHHcCCCEEEEEEcCC---cccccccc--cccCC-cCHHHHHhhcCceEEEEeCCC
Q 016903 167 CAVTYFGDGG--TSEGDFHAALNFSAVTEAPVIFICRNNG---WAISTPIS--DQFRS-DGAVVKGRAYGVRSIRVDGND 238 (380)
Q Consensus 167 ~vv~~~GDG~--~~eG~~~Eal~~A~~~~Lpvi~vv~NN~---~~~~~~~~--~~~~~-~~~~~~a~a~G~~~~~VdG~D 238 (380)
.++.++.||. +.+|..-..+.-|...++-++||+.+|. -+|.-... ..... ..+......|++|+..|- +|
T Consensus 166 qlilLISDG~~~~~e~~~~~~~r~a~e~~i~l~~I~ld~~~~~~SI~d~~~~~~~~~~~~~l~~Yl~~fpfpYy~~~-~~ 244 (266)
T cd01460 166 QLLLIISDGRGEFSEGAQKVRLREAREQNVFVVFIIIDNPDNKQSILDIKVVSFKNDKSGVITPYLDEFPFPYYVIV-RD 244 (266)
T ss_pred cEEEEEECCCcccCccHHHHHHHHHHHcCCeEEEEEEcCCCCCCCcccccccccCCCCccHHHHHHhcCCCCeEEEe-cC
Confidence 7999999999 8888887778888888996666665543 23321111 00011 146678899999988754 48
Q ss_pred HHHHHHHHHHHHH
Q 016903 239 ALAIYSAVHAARE 251 (380)
Q Consensus 239 ~~av~~a~~~a~~ 251 (380)
+.++..++..++.
T Consensus 245 ~~~lp~~l~~~lr 257 (266)
T cd01460 245 LNQLPSVLSDALR 257 (266)
T ss_pred hhHhHHHHHHHHH
Confidence 8898888887763
|
The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function. |
| >PLN02683 pyruvate dehydrogenase E1 component subunit beta | Back alignment and domain information |
|---|
Probab=89.25 E-value=3.6 Score=41.12 Aligned_cols=101 Identities=19% Similarity=0.113 Sum_probs=58.3
Q ss_pred cchHHHHHHHHHhhhcCCCCeeEEEe-CccccCcchHHHHHHHHHHcC--------CCEEEEEEcCCcccccccccccCC
Q 016903 147 TQLPHAVGAAYALKMDRKDACAVTYF-GDGGTSEGDFHAALNFSAVTE--------APVIFICRNNGWAISTPISDQFRS 217 (380)
Q Consensus 147 ~~lp~A~G~A~A~k~~~~~~~vv~~~-GDG~~~eG~~~Eal~~A~~~~--------Lpvi~vv~NN~~~~~~~~~~~~~~ 217 (380)
+.++.|.|+|++ | .++++++. .|=. +=.+-+-.+-++.++ +||+|+..+......++++.+
T Consensus 85 ~~vg~AaGlA~~----G-~~P~v~~~~~~f~--~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~G~~~g~G~tH~~--- 154 (356)
T PLN02683 85 GFTGIGVGAAYA----G-LKPVVEFMTFNFS--MQAIDHIINSAAKTNYMSAGQISVPIVFRGPNGAAAGVGAQHSQ--- 154 (356)
T ss_pred HHHHHHHHHHHC----C-CEEEEEEehhhHH--HHHHHHHHHHHHHhccccCCCccCCEEEEEeCCCCCCCCCcccc---
Confidence 345667777654 2 24444443 3222 112333345666665 999999877332222333322
Q ss_pred cCHHHHHhhc-CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016903 218 DGAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 218 ~~~~~~a~a~-G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~ 264 (380)
.+ ....+++ |+.++.-- |..++...++.+++ .++|++|-.
T Consensus 155 ~~-~a~lr~iPnl~V~~Pa--d~~e~~~~l~~a~~----~~gPv~ir~ 195 (356)
T PLN02683 155 CF-AAWYSSVPGLKVLAPY--SSEDARGLLKAAIR----DPDPVVFLE 195 (356)
T ss_pred CH-HHHHhcCCCCEEEEeC--CHHHHHHHHHHHHh----CCCcEEEEE
Confidence 22 3455554 77777655 88999999998885 368999853
|
|
| >PRK11892 pyruvate dehydrogenase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=88.76 E-value=3.3 Score=42.94 Aligned_cols=99 Identities=19% Similarity=0.158 Sum_probs=60.4
Q ss_pred chHHHHHHHHHhhhcCCCCeeEEEe-CccccCcchHHHHHHHHH--------HcCCCEEEEEEcCCcccccccccccCCc
Q 016903 148 QLPHAVGAAYALKMDRKDACAVTYF-GDGGTSEGDFHAALNFSA--------VTEAPVIFICRNNGWAISTPISDQFRSD 218 (380)
Q Consensus 148 ~lp~A~G~A~A~k~~~~~~~vv~~~-GDG~~~eG~~~Eal~~A~--------~~~Lpvi~vv~NN~~~~~~~~~~~~~~~ 218 (380)
.+++|+|+|++ .-++++.++ .+-.. =.+-+-.|.++ .+++||+|+..|.+.+..++ +.+..
T Consensus 201 ~vg~AaGlA~~-----G~rPiv~~~~~~f~~--ra~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~~~G~---hhs~~ 270 (464)
T PRK11892 201 FAGIGVGAAFA-----GLKPIVEFMTFNFAM--QAIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAARVAA---QHSQD 270 (464)
T ss_pred HHHHHHHHHhC-----CCEEEEEEehHHHHH--HHHHHHHHHHhHHhhhcCCccCCCEEEEecCCCCCCCCC---ccccC
Confidence 35666777664 234444443 22222 12334456667 88999999988877654333 22233
Q ss_pred CHHHHHhhc-CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 016903 219 GAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (380)
Q Consensus 219 ~~~~~a~a~-G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe 263 (380)
+ ....+.+ |+.++.-- |+.+.+..++.+++ .++|++|-
T Consensus 271 d-~a~~~~iPgl~V~~P~--d~~d~~~ll~~ai~----~~~Pv~il 309 (464)
T PRK11892 271 Y-AAWYSHIPGLKVVAPY--SAADAKGLLKAAIR----DPNPVIFL 309 (464)
T ss_pred H-HHHHhhCCCCEEEEeC--CHHHHHHHHHHHhh----CCCcEEEE
Confidence 3 3445544 77777644 88889999998885 37899874
|
|
| >PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=88.39 E-value=2.9 Score=44.54 Aligned_cols=101 Identities=15% Similarity=0.074 Sum_probs=60.7
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHH-HHHHHHHcCCCEEEEEEcCCccc-ccccccccCCcCHHHHHhh
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHA-ALNFSAVTEAPVIFICRNNGWAI-STPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~E-al~~A~~~~Lpvi~vv~NN~~~~-~~~~~~~~~~~~~~~~a~a 226 (380)
+++|.|+|+. + .++|+.+ =..|.+ -.++ -.+.++..++||++++...++.. .+++.. ...+++-...-
T Consensus 334 vg~A~GlA~~----G--~~p~~~~-f~~F~~-ra~dQi~~~~a~~~~pv~~v~~~~G~~g~dG~tH~--~~edia~lr~i 403 (580)
T PRK05444 334 VTFAAGLATE----G--LKPVVAI-YSTFLQ-RAYDQVIHDVALQNLPVTFAIDRAGLVGADGPTHQ--GAFDLSYLRCI 403 (580)
T ss_pred HHHHHHHHHC----C--CeeEEEe-eHHHHH-HHHHHHHHHhhhcCCCEEEEEeCCCcCCCCCcccc--ccHHHHHHhcC
Confidence 4556666652 2 3444433 445644 3344 45557889999999998666532 122222 22333333333
Q ss_pred cCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016903 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 227 ~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~ 264 (380)
-|+.++.-- |+.++..+++.|++. .++|++|..
T Consensus 404 P~l~V~~Ps--d~~e~~~~l~~a~~~---~~~P~~ir~ 436 (580)
T PRK05444 404 PNMVIMAPS--DENELRQMLYTALAY---DDGPIAIRY 436 (580)
T ss_pred CCCEEEeeC--CHHHHHHHHHHHHhC---CCCcEEEEe
Confidence 367666654 899999999999853 368998744
|
|
| >PRK05899 transketolase; Reviewed | Back alignment and domain information |
|---|
Probab=88.29 E-value=2.8 Score=45.12 Aligned_cols=102 Identities=19% Similarity=0.094 Sum_probs=63.1
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCccc--ccccccccCCcCHHHHHhh
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~--~~~~~~~~~~~~~~~~a~a 226 (380)
+++|.|+|+. +.-+++++.+ ..|. .-.++.+.+++..++|++++....+++. .++++ .+..+++-...-
T Consensus 380 vg~A~GlA~~----G~~~pv~~t~--~~F~-~r~~~qir~~~~~~~pv~~v~~~~G~~~g~~G~tH--q~~edia~~r~i 450 (624)
T PRK05899 380 AAIANGLALH----GGFIPFGGTF--LVFS-DYARNAIRLAALMKLPVIYVFTHDSIGVGEDGPTH--QPVEQLASLRAI 450 (624)
T ss_pred HHHHHHHHHc----CCCeEEEEEc--HHHH-HHHHHHHHHHHhcCCCEEEEEECCCcCcCCCCCCc--ccHHHHHHHHhC
Confidence 4556666543 3233344332 3454 4577888888889999999998877643 34444 222333322222
Q ss_pred cCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016903 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 227 ~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~ 264 (380)
-|+.++.- .|+.++..+++.+++. .++|++|-.
T Consensus 451 P~~~V~~P--~d~~e~~~~l~~a~~~---~~~P~~ir~ 483 (624)
T PRK05899 451 PNLTVIRP--ADANETAAAWKYALER---KDGPSALVL 483 (624)
T ss_pred CCcEEEeC--CCHHHHHHHHHHHHHc---CCCCEEEEE
Confidence 25655553 4889999999998852 369998866
|
|
| >PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=88.26 E-value=2.9 Score=45.15 Aligned_cols=102 Identities=14% Similarity=0.084 Sum_probs=61.0
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHH-HHHHHcCCCEEEEEEcCCcc-cccccccccCCcCHHHHHhh
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAAL-NFSAVTEAPVIFICRNNGWA-ISTPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal-~~A~~~~Lpvi~vv~NN~~~-~~~~~~~~~~~~~~~~~a~a 226 (380)
+++|.|+|++ .-+++++++. .|.+ -.++.+ +.++..++||+|++...++. ..+++... ..+++-...-
T Consensus 374 vg~AaGlA~~-----G~~P~v~~f~--~Fl~-ra~dQI~~~~a~~~lpv~~v~~~~G~~g~dG~THq~--~~dia~lr~i 443 (641)
T PRK12571 374 VTFAAGLAAA-----GLKPFCAVYS--TFLQ-RGYDQLLHDVALQNLPVRFVLDRAGLVGADGATHAG--AFDLAFLTNL 443 (641)
T ss_pred HHHHHHHHHC-----CCEEEEEehH--HHHH-HHHHHHHHHHhhcCCCeEEEEECCCcCCCCCccccc--cHHHHHHhcC
Confidence 4556666642 2344555543 4554 344555 66889999999999766653 22333322 2233322222
Q ss_pred cCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 016903 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEAL 265 (380)
Q Consensus 227 ~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~ 265 (380)
-|+.++.-- |..+++.+++.|++. .++|++|-..
T Consensus 444 Pnl~V~~Ps--d~~e~~~~l~~a~~~---~~~P~~ir~~ 477 (641)
T PRK12571 444 PNMTVMAPR--DEAELRHMLRTAAAH---DDGPIAVRFP 477 (641)
T ss_pred CCCEEEeeC--CHHHHHHHHHHHHhC---CCCcEEEEEe
Confidence 266666544 889999999988852 4699998554
|
|
| >PTZ00089 transketolase; Provisional | Back alignment and domain information |
|---|
Probab=88.01 E-value=3.6 Score=44.63 Aligned_cols=101 Identities=17% Similarity=0.118 Sum_probs=63.5
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCccc--ccccccccCCcCHHHHHhh
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~--~~~~~~~~~~~~~~~~a~a 226 (380)
+++|.|+|+. +.-+++++.+. .|.+ -.++.+..++..+|||+||+...+++. ++++.. +..+++- .++
T Consensus 416 v~~AaGlA~~----~G~~P~~~tf~--~Fl~-Ra~dqir~~al~~lpV~~v~thdg~~~g~DG~THq--~iedia~-lR~ 485 (661)
T PTZ00089 416 CAIMNGIAAH----GGFIPFGATFL--NFYG-YALGAVRLAALSHHPVIYVATHDSIGLGEDGPTHQ--PVETLAL-LRA 485 (661)
T ss_pred HHHHHHHHHc----CCCeEEEEehH--HHHH-HHHHHHHHHHhcCCCeEEEEeCCceecCCCCCCcc--cHHHHHH-Hhc
Confidence 4456666551 22245555553 6755 677889999999999999997777654 333332 2223322 222
Q ss_pred c-CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016903 227 Y-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 227 ~-G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~ 264 (380)
+ |+.+++ --|..++..+++.|++. .++|+.|-.
T Consensus 486 iPn~~V~~--PaD~~E~~~~l~~al~~---~~gP~~irl 519 (661)
T PTZ00089 486 TPNLLVIR--PADGTETSGAYALALAN---AKTPTILCL 519 (661)
T ss_pred CCCcEEEe--cCCHHHHHHHHHHHHHc---CCCCEEEEe
Confidence 2 555554 34888998888888742 468998865
|
|
| >PLN02234 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=87.74 E-value=3.2 Score=44.69 Aligned_cols=99 Identities=14% Similarity=0.172 Sum_probs=57.5
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcc-cccccccccCCcCHHHHHhhc
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWA-ISTPISDQFRSDGAVVKGRAY 227 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~-~~~~~~~~~~~~~~~~~a~a~ 227 (380)
+++|.|+|+. + -+++++++ +.|.+-.+-+-.+.++..++||+|++...++. ..++++.+ ..+++ ..+.+
T Consensus 412 Vg~AaGLA~~----G-~rPvv~~f--s~Fl~RA~DQI~~dva~~~lpV~~v~~~aG~~g~dG~TH~~--~~Dia-~lr~i 481 (641)
T PLN02234 412 VTFAAGLACE----G-LKPFCTIY--SSFMQRAYDQVVHDVDLQKLPVRFAIDRAGLMGADGPTHCG--AFDVT-FMACL 481 (641)
T ss_pred HHHHHHHHHC----C-CeEEEEeh--HHHHHHHHHHHHHHHhhcCCCEEEEEeCCccCCCCCccccc--cHHHH-HHhcC
Confidence 4455565542 2 34445543 45544333344467788999999999877653 22333322 12222 22222
Q ss_pred -CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEE
Q 016903 228 -GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILI 262 (380)
Q Consensus 228 -G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lI 262 (380)
|+.++.-- |+.++..+++.|... .++|++|
T Consensus 482 Pnl~V~~Ps--d~~E~~~~l~~a~~~---~~~Pv~i 512 (641)
T PLN02234 482 PNMIVMAPS--DEAELFNMVATAAAI---DDRPSCF 512 (641)
T ss_pred CCCEEEeeC--CHHHHHHHHHHHHhC---CCCCEEE
Confidence 66666544 888999988887753 4589988
|
|
| >TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit | Back alignment and domain information |
|---|
Probab=87.68 E-value=3.5 Score=44.06 Aligned_cols=109 Identities=18% Similarity=0.147 Sum_probs=67.8
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHc--CCCEEEEEEcCCcccccccccccCCcCHHHHHhh
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT--EAPVIFICRNNGWAISTPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~--~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a 226 (380)
+.+++|+++| +.++++.+-=.+++ ...|.|..++.. .+|+|+++-|..-..++ +....|.. .++.
T Consensus 59 ~~~~~GAs~a------G~ra~t~ts~~Gl~--~~~e~l~~~~~~g~~~~iV~~~~~~~gp~~~----~~~q~d~~-~~~~ 125 (595)
T TIGR03336 59 VEVAAGAAWS------GLRAFCTMKHVGLN--VAADPLMTLAYTGVKGGLVVVVADDPSMHSS----QNEQDTRH-YAKF 125 (595)
T ss_pred HHHHHHHHhc------CcceEEEccCCchh--hhHHHhhhhhhhcCcCceEEEEccCCCCccc----hhhHhHHH-HHHh
Confidence 5678888876 23444444333332 345667666644 45777777654211111 11112222 3445
Q ss_pred cCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCC
Q 016903 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT 274 (380)
Q Consensus 227 ~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~ 274 (380)
.+|+++... |+.++++...+|++.+++.+-|++|-..+ + -+|+.
T Consensus 126 ~~~~vl~p~--~~qE~~d~~~~Af~lae~~~~PV~v~~d~-~-l~h~~ 169 (595)
T TIGR03336 126 AKIPCLEPS--TPQEAKDMVKYAFELSEKFGLPVILRPTT-R-ISHMR 169 (595)
T ss_pred cCCeEECCC--CHHHHHHHHHHHHHHHHHHCCCEEEEEee-e-eccce
Confidence 688866554 89999999999999999999999998875 3 45654
|
Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase. |
| >PLN02582 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=86.52 E-value=4.7 Score=43.82 Aligned_cols=102 Identities=13% Similarity=0.138 Sum_probs=59.9
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCccc-ccccccccCCcCHHHHHhhc
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI-STPISDQFRSDGAVVKGRAY 227 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~-~~~~~~~~~~~~~~~~a~a~ 227 (380)
+++|.|+|+. + -+++++++ ..|.+=.+-+-.+-++..++||+|++...++.. .+++... ..|++-...--
T Consensus 411 vg~AaGLA~~----G-~kPvv~~f--s~Fl~RA~DQI~~dval~~lpVv~v~~~aG~vg~dG~TH~~--~~Dia~lr~iP 481 (677)
T PLN02582 411 VTFAAGLACE----G-LKPFCAIY--SSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCG--AFDVTYMACLP 481 (677)
T ss_pred HHHHHHHHHC----C-CeEEEEec--HHHHHHHHHHHHHHHHhcCCCEEEEEECCCcccCCCCcccc--cHHHHHHhcCC
Confidence 4455555542 2 35555554 355442233455777889999999998776532 2333322 12222222222
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016903 228 GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 228 G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~ 264 (380)
|+.++.-- |..+++..++.|+.. .++|++|..
T Consensus 482 nl~V~~Ps--d~~E~~~~l~~al~~---~~gPv~IR~ 513 (677)
T PLN02582 482 NMVVMAPS--DEAELFHMVATAAAI---DDRPSCFRY 513 (677)
T ss_pred CCEEEeeC--CHHHHHHHHHHHHhC---CCCCEEEEE
Confidence 66666544 888999999988853 458998854
|
|
| >PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding | Back alignment and domain information |
|---|
Probab=86.37 E-value=2.7 Score=50.30 Aligned_cols=107 Identities=14% Similarity=0.102 Sum_probs=69.4
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+. +...+++|..|=|.++ ..-++..|..-+.|||+|.-+-......... ....|....++.+-
T Consensus 352 afmAdGyAR~T---gkpgV~i~TsGPG~tN---~l~av~eA~~d~vPlLvItgd~p~~~~~~ga--~Q~iDq~~lf~pvt 423 (1655)
T PLN02980 352 AFHALGYARGS---LKPAVVITSSGTAVSN---LLPAVVEASQDFVPLLLLTADRPPELQDAGA--NQAINQVNHFGSFV 423 (1655)
T ss_pred HHHHHHHHHHh---CCCEEEEEeCcHHHHH---HHHHHHHHhhcCCCEEEEeCCCCHHHhcCCC--CcccchhhHHHhhh
Confidence 34677777653 4556677777888886 5667888888999999999765432211111 11134455666665
Q ss_pred ceEEEEeCCCHHH------HHHHHHHHHHHhhcc-CCcEEEEEE
Q 016903 229 VRSIRVDGNDALA------IYSAVHAAREMAIGE-GRPILIEAL 265 (380)
Q Consensus 229 ~~~~~VdG~D~~a------v~~a~~~a~~~ar~~-~gP~lIe~~ 265 (380)
-...+|. ++.. +..++++|+..++.+ .||+.|++-
T Consensus 424 K~s~~v~--~p~~~~~~~~l~~~v~~A~~~A~s~rpGPVhL~iP 465 (1655)
T PLN02980 424 RFFFNLP--PPTDLIPARMVLTTLDSAVHWATSSPCGPVHINCP 465 (1655)
T ss_pred heeecCC--CccchhhHHHHHHHHHHHHHHHhCCCCCCEEEECc
Confidence 5555553 4433 356778888777776 499999997
|
|
| >COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=86.35 E-value=4.9 Score=40.32 Aligned_cols=111 Identities=16% Similarity=0.187 Sum_probs=75.8
Q ss_pred cchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccc-cccccCCcCHHHHHh
Q 016903 147 TQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTP-ISDQFRSDGAVVKGR 225 (380)
Q Consensus 147 ~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~-~~~~~~~~~~~~~a~ 225 (380)
+.++.++|++++- .+..-...|.|-. ..+|.+-+|+-..+|+|+++.+........ +.. ...|+... +
T Consensus 58 ~a~s~v~GA~~aG-----ar~~TaTSg~Gl~---Lm~E~l~~a~~~~~P~Vi~~~~R~~ps~g~p~~~--dq~D~~~~-r 126 (365)
T COG0674 58 GAISAVIGASYAG-----ARAFTATSGQGLL---LMAEALGLAAGTETPLVIVVAQRPLPSTGLPIKG--DQSDLMAA-R 126 (365)
T ss_pred HHHHHHHHHHhhC-----cceEeecCCccHH---HHHHHHHHHHhccCCeEEEEeccCcCCCcccccc--cHHHHHHH-H
Confidence 3478888888873 3444555566655 368999999999999999998877544332 111 11233221 1
Q ss_pred hcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCC
Q 016903 226 AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 270 (380)
Q Consensus 226 a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~ 270 (380)
.-||+.+... |+.+.+...-.|...|.+..-|+++-..-++..
T Consensus 127 ~~g~~~~~~~--s~qEa~d~t~~Af~iAe~~~~Pvi~~~D~~~~~ 169 (365)
T COG0674 127 DTGFPILVSA--SVQEAFDLTLLAFNIAEKVLTPVIVLLDGFLAS 169 (365)
T ss_pred ccCceEEeec--cHHHHHHHHHHHHHHHHHhcCCEEEeeccchhc
Confidence 2288888777 888888888888888777788999987776643
|
|
| >PLN02225 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=86.23 E-value=4.9 Score=43.71 Aligned_cols=102 Identities=10% Similarity=0.063 Sum_probs=60.6
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCccc-ccccccccCCcCHHHHHhhc
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI-STPISDQFRSDGAVVKGRAY 227 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~-~~~~~~~~~~~~~~~~a~a~ 227 (380)
++.|.|+|.. .-++++++. ..|.+=.+-+-.+-++..++||+|++..-++.. .+++.. ...|++-...--
T Consensus 436 Vt~AAGLA~~-----G~kPvv~iy--stFlqRAyDQI~~Dval~~lpV~~vid~aGlvg~DG~TH~--g~~Dia~lr~IP 506 (701)
T PLN02225 436 VTFSAGLSSG-----GLKPFCIIP--SAFLQRAYDQVVHDVDRQRKAVRFVITSAGLVGSDGPVQC--GAFDIAFMSSLP 506 (701)
T ss_pred HHHHHHHHHC-----CCEEEEEee--hhHHHHHHHHHHHHHHhhcCCceEEEECCccCCCCCcccc--ccHHHHHHhcCC
Confidence 4455565542 346677777 467553344445557889999999998755432 222222 223333222222
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016903 228 GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 228 G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~ 264 (380)
|+.++.-. |..++...++.|... .++|++|-.
T Consensus 507 nm~V~aPs--D~~El~~mL~~A~~~---~~gPv~IR~ 538 (701)
T PLN02225 507 NMIAMAPA--DEDELVNMVATAAYV---TDRPVCFRF 538 (701)
T ss_pred CCEEEeeC--CHHHHHHHHHHHHhc---CCCCEEEEe
Confidence 66655544 889999999887742 468999854
|
|
| >PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=85.31 E-value=5.8 Score=42.37 Aligned_cols=101 Identities=9% Similarity=-0.005 Sum_probs=60.0
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhc-
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY- 227 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~- 227 (380)
+++|.|+|+. + -+++++.+.+ |.+-.+-+-.+-++..++||+|++..-++...+++... ..|++ ..+.+
T Consensus 333 v~~AaGlA~~----G-~~Pvv~~fs~--Fl~ra~dQi~~d~a~~~lpv~~~~~~~g~~~dG~TH~~--~~Dia-~lr~iP 402 (581)
T PRK12315 333 VAFASGIAAN----G-ARPVIFVNST--FLQRAYDQLSHDLAINNNPAVMIVFGGSISGNDVTHLG--IFDIP-MISNIP 402 (581)
T ss_pred HHHHHHHHHC----c-CeEEEEeeHH--HHHHHHHHHHHHHHhcCCCEEEEEECCcccCCCccccc--cHHHH-HHhcCC
Confidence 4556666542 3 3455555543 43322333445578889999999987666544444432 22332 22322
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016903 228 GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 228 G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~ 264 (380)
|+.++. -.|..++..+++.|++. .++|++|-.
T Consensus 403 nl~V~~--P~d~~e~~~~l~~a~~~---~~gP~~ir~ 434 (581)
T PRK12315 403 NLVYLA--PTTKEELIAMLEWALTQ---HEHPVAIRV 434 (581)
T ss_pred CCEEEe--cCCHHHHHHHHHHHHhC---CCCcEEEEE
Confidence 555554 34888999999888752 368998855
|
|
| >COG0021 TktA Transketolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.52 E-value=3.4 Score=44.02 Aligned_cols=79 Identities=16% Similarity=0.145 Sum_probs=55.6
Q ss_pred HHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEE
Q 016903 182 FHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPIL 261 (380)
Q Consensus 182 ~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~l 261 (380)
..-++.+|+..++|++||..-..++.........+.+.++.+=.-.++.+++=- |..+...+.+.|+++ .++|++
T Consensus 441 ~r~AiRlaALm~l~~~~V~THDSIgvGEDGPTHqPiEqLa~LRaiPN~~V~RPa--D~~Et~~aw~~Al~~---~~gPt~ 515 (663)
T COG0021 441 ARPAVRLAALMGLPVIYVFTHDSIGVGEDGPTHQPVEQLASLRAIPNLSVIRPA--DANETAAAWKYALER---KDGPTA 515 (663)
T ss_pred hhHHHHHHHhcCCCeEEEEecCceecCCCCCCCCcHHHHHHhhccCCceeEecC--ChHHHHHHHHHHHhc---CCCCeE
Confidence 446799999999999999999988765333223334444444444588888833 555777888888874 689998
Q ss_pred EEEE
Q 016903 262 IEAL 265 (380)
Q Consensus 262 Ie~~ 265 (380)
|...
T Consensus 516 Lilt 519 (663)
T COG0021 516 LILT 519 (663)
T ss_pred EEEe
Confidence 8753
|
|
| >COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.02 E-value=4.3 Score=35.18 Aligned_cols=107 Identities=13% Similarity=0.087 Sum_probs=67.2
Q ss_pred cchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHH-HHHHcCCCEEEEEEcCCcccccccccccC-CcCHHHHH
Q 016903 147 TQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALN-FSAVTEAPVIFICRNNGWAISTPISDQFR-SDGAVVKG 224 (380)
Q Consensus 147 ~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~-~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~-~~~~~~~a 224 (380)
-+++++.|+.+|- ++..+.+-- .++. -...+|. +-..+++|++.++.-.++-...- ..|.+ +.-+.++.
T Consensus 53 eg~GIcAGa~lAG-----kk~ailmQn-sGlG--NsiNal~SL~~ty~iPl~ml~ShRG~~~E~i-~AQVpmGr~~~kiL 123 (172)
T COG4032 53 EGVGICAGAYLAG-----KKPAILMQN-SGLG--NSINALASLYVTYKIPLLMLASHRGVLKEGI-EAQVPMGRALPKIL 123 (172)
T ss_pred cceeeehhhhhcC-----CCcEEEEec-cCcc--hHHHHHHHHHHHhccchhhhhhccchhhcCC-ccccccchhhHHHH
Confidence 3467788888873 233333332 2221 1222222 23458899999888776533221 12222 23456788
Q ss_pred hhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016903 225 RAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 225 ~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~ 264 (380)
+..++|.+++- .+++-+..+..+...+-+..+|+.+-+
T Consensus 124 e~~~lpt~t~~--~p~Ea~~li~~~~~~a~~~s~pv~vll 161 (172)
T COG4032 124 EGLELPTYTII--GPEEALPLIENAILDAFENSRPVAVLL 161 (172)
T ss_pred hhcCCcccccC--CHHHHHHHHHHHHHHHHHcCCceEEEe
Confidence 99999999988 678888888888888888889987654
|
|
| >PRK12753 transketolase; Reviewed | Back alignment and domain information |
|---|
Probab=84.01 E-value=6.6 Score=42.60 Aligned_cols=103 Identities=16% Similarity=0.011 Sum_probs=63.7
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhc-
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY- 227 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~- 227 (380)
+++|.|+|+- +.-.++++.+ +.|.+ -.++.+.+++..++||+||....+++.........+..+++- .++.
T Consensus 415 v~~aaGlA~~----~G~~P~~~tf--~~F~~-r~~~qir~~a~~~l~V~~v~thdg~~~G~DG~THq~iedla~-lR~iP 486 (663)
T PRK12753 415 TAIANGIAHH----GGFVPYTATF--LMFVE-YARNAARMAALMKARQIMVYTHDSIGLGEDGPTHQPVEQLAS-LRLTP 486 (663)
T ss_pred HHHHHHHHHh----CCCeEEEEeh--HHHHH-HHHHHHHHHHhcCCCeEEEEeCCCcccCCCCcccccHHHHHH-HhcCC
Confidence 4566666651 1223444444 36655 678899999999999999998888765322222222233322 2322
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016903 228 GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 228 G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~ 264 (380)
|+.+++-- |..++..+++.|++. .++|+.|-.
T Consensus 487 n~~v~~Pa--D~~E~~~~~~~al~~---~~gP~~irl 518 (663)
T PRK12753 487 NFSTWRPC--DQVEAAVAWKLAIER---HNGPTALIL 518 (663)
T ss_pred CCEEEccC--CHHHHHHHHHHHHhc---CCCCEEEEe
Confidence 55555533 788888888888852 478988755
|
|
| >PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.71 E-value=9.2 Score=38.25 Aligned_cols=98 Identities=17% Similarity=0.160 Sum_probs=56.1
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEE-eCccccCcchHHHHHHHHHH--------cCCCEEEEEEcCCcccccccccccCCcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTY-FGDGGTSEGDFHAALNFSAV--------TEAPVIFICRNNGWAISTPISDQFRSDG 219 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~-~GDG~~~eG~~~Eal~~A~~--------~~Lpvi~vv~NN~~~~~~~~~~~~~~~~ 219 (380)
+++|.|+|++ + .++++++ +.| |.+-.+-+-.+-++. +++|+|++.....++..++++.+ .
T Consensus 95 vg~AaGlA~~----G-~~Pvv~~~fa~--Fl~ra~dQi~~d~a~~~~~~~g~~~v~vv~~~~~g~~g~~G~tHs~----~ 163 (355)
T PTZ00182 95 AGFAIGAAMN----G-LRPIAEFMFAD--FIFPAFDQIVNEAAKYRYMSGGQFDCPIVIRGPNGAVGHGGAYHSQ----S 163 (355)
T ss_pred HHHHHHHHhC----C-CEEEEEechhh--HHHHHHHHHHHHHHHhhcccCCCccCCEEEEeCCCCCCCCCCcccc----h
Confidence 5566777653 2 2344443 343 322223333344554 35678777655555555555433 1
Q ss_pred HHHHHhhc-CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 016903 220 AVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (380)
Q Consensus 220 ~~~~a~a~-G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe 263 (380)
+....+++ |+.++.-- |+.+++.+++.+++ .++|++|-
T Consensus 164 ~ea~lr~iPn~~V~~Ps--d~~e~~~~l~~a~~----~~~P~~i~ 202 (355)
T PTZ00182 164 FEAYFAHVPGLKVVAPS--DPEDAKGLLKAAIR----DPNPVVFF 202 (355)
T ss_pred HHHHHhcCCCCEEEeeC--CHHHHHHHHHHHHh----CCCcEEEE
Confidence 22445544 67666654 88899999999886 37899773
|
|
| >PLN02790 transketolase | Back alignment and domain information |
|---|
Probab=83.58 E-value=7.4 Score=42.17 Aligned_cols=74 Identities=20% Similarity=0.259 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHcCCCEEEEEEcCCccc--ccccccccCCcCHHHHHhhc---CceEEEEeCCCHHHHHHHHHHHHHHhhc
Q 016903 181 DFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKGRAY---GVRSIRVDGNDALAIYSAVHAAREMAIG 255 (380)
Q Consensus 181 ~~~Eal~~A~~~~Lpvi~vv~NN~~~~--~~~~~~~~~~~~~~~~a~a~---G~~~~~VdG~D~~av~~a~~~a~~~ar~ 255 (380)
...+++.+++..+|||+||+...+.+. ++++.. .+.+++--- ++.+++ --|..++..+++.|++.
T Consensus 431 ~~~~~ir~~al~~lpV~~v~thdg~~~G~DG~THq-----~iedla~lR~iPnl~V~~--PaD~~E~~~~l~~al~~--- 500 (654)
T PLN02790 431 YMRAAMRLSALSEAGVIYVMTHDSIGLGEDGPTHQ-----PIEHLASLRAMPNILMLR--PADGNETAGAYKVAVTN--- 500 (654)
T ss_pred HHHHHHHHHHhcCCCeEEEEECCceeecCCCCCcc-----cHHHHHHhcCCCCcEEEe--CCCHHHHHHHHHHHHHc---
Confidence 456788889999999999998777653 333332 244444333 444444 34888888888888752
Q ss_pred cCCcEEEEE
Q 016903 256 EGRPILIEA 264 (380)
Q Consensus 256 ~~gP~lIe~ 264 (380)
.++|+.|-.
T Consensus 501 ~~gP~~irl 509 (654)
T PLN02790 501 RKRPTVLAL 509 (654)
T ss_pred CCCCEEEEe
Confidence 468988854
|
|
| >PRK09212 pyruvate dehydrogenase subunit beta; Validated | Back alignment and domain information |
|---|
Probab=83.34 E-value=10 Score=37.35 Aligned_cols=66 Identities=14% Similarity=0.101 Sum_probs=42.0
Q ss_pred CCCEEEEEEcCCcccccccccccCCcCHHHHHhhc-CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 193 EAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 193 ~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~-G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
++|+++...+-.++..++++.+. +....++. |+.++.- .|+.++...++.|++ .++|++|-..-.|
T Consensus 110 ~v~vv~~~~~g~~~~~G~tH~~~----~ea~~r~iP~l~V~~P--~d~~e~~~~l~~a~~----~~~Pv~i~~~~~~ 176 (327)
T PRK09212 110 KCPIVFRGPNGAAARVAAQHSQC----YAAWYSHIPGLKVVAP--YFAADCKGLLKTAIR----DPNPVIFLENEIL 176 (327)
T ss_pred CccEEEEeCCCCCCCCCcccccC----HHHHHhcCCCCEEEee--CCHHHHHHHHHHHHh----CCCcEEEEEchhh
Confidence 57888887665555555544222 22444444 6666654 488999999998885 3789988444333
|
|
| >PRK12754 transketolase; Reviewed | Back alignment and domain information |
|---|
Probab=80.88 E-value=10 Score=41.20 Aligned_cols=104 Identities=12% Similarity=0.005 Sum_probs=62.9
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
+++|.|+|+- +.-.+.++.+ ..|.. -.++++.+++..+|||++|....+++.........+..+++-.-.--|
T Consensus 415 v~iaaGlA~~----~G~~Pf~~tf--~~F~~-r~~~qir~~a~~~l~V~~v~th~gi~~G~DG~THq~iEdla~lR~iPn 487 (663)
T PRK12754 415 TAIANGIALH----GGFLPYTSTF--LMFVE-YARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTPN 487 (663)
T ss_pred HHHHhhHHhc----CCCeEEEEee--HHHHH-HHHHHHHHHHHcCCCeEEEEECCccccCCCCCCcccHHHHHHHhcCCC
Confidence 4556666652 1122333333 35554 678899999999999999998888765432222222333332222225
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~ 264 (380)
+.+++- -|..++..+++.++++ .++|+.|-.
T Consensus 488 ~~V~~P--aD~~E~~~~~~~a~~~---~~gP~yirl 518 (663)
T PRK12754 488 MSTWRP--CDQVESAVAWKYGVER---QDGPTALIL 518 (663)
T ss_pred cEEecC--CCHHHHHHHHHHHHhC---CCCCEEEEe
Confidence 555553 4888888888888863 468997654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 380 | ||||
| 2j9f_A | 400 | Human Branched-Chain Alpha-Ketoacid Dehydrogenase- | 1e-105 | ||
| 1dtw_A | 400 | Human Branched-Chain Alpha-Keto Acid Dehydrogenase | 1e-104 | ||
| 1x7y_A | 400 | Crystal Structure Of The Human Mitochondrial Branch | 1e-104 | ||
| 1x80_A | 400 | Crystal Structure Of The Human Mitochondrial Branch | 1e-104 | ||
| 1x7w_A | 400 | Crystal Structure Of The Human Mitochondrial Branch | 1e-104 | ||
| 2bff_A | 400 | Reactivity Modulation Of Human Branched-Chain Alpha | 1e-104 | ||
| 1x7x_A | 400 | Crystal Structure Of The Human Mitochondrial Branch | 1e-104 | ||
| 1x7z_A | 400 | Crystal Structure Of The Human Mitochondrial Branch | 1e-103 | ||
| 1olu_A | 400 | Roles Of His291-Alpha And His146-Beta' In The Reduc | 1e-103 | ||
| 1v16_A | 400 | Crosstalk Between Cofactor Binding And The Phosphor | 1e-102 | ||
| 2bfc_A | 400 | Reactivity Modulation Of Human Branched-Chain Alpha | 1e-102 | ||
| 1v11_A | 400 | Crosstalk Between Cofactor Binding And The Phosphor | 1e-102 | ||
| 2bfe_A | 400 | Reactivity Modulation Of Human Branched-Chain Alpha | 1e-102 | ||
| 2bfb_A | 400 | Reactivity Modulation Of Human Branched-Chain Alpha | 1e-101 | ||
| 1v1m_A | 400 | Crosstalk Between Cofactor Binding And The Phosphor | 1e-101 | ||
| 2bfd_A | 400 | Reactivity Modulation Of Human Branched-Chain Alpha | 1e-101 | ||
| 1um9_A | 367 | Branched-chain 2-oxo Acid Dehydrogenase (e1) From T | 1e-61 | ||
| 3duf_A | 369 | Snapshots Of Catalysis In The E1 Subunit Of The Pyr | 4e-57 | ||
| 1w85_A | 368 | The Crystal Structure Of Pyruvate Dehydrogenase E1 | 4e-57 | ||
| 1w88_A | 368 | The Crystal Structure Of Pyruvate Dehydrogenase E1( | 1e-56 | ||
| 3dva_A | 369 | Snapshots Of Catalysis In The E1 Subunit Of The Pyr | 2e-56 | ||
| 2bp7_A | 410 | New Crystal Form Of The Pseudomonas Putida Branched | 3e-50 | ||
| 1qs0_A | 407 | Crystal Structure Of Pseudomonas Putida 2-Oxoisoval | 4e-47 | ||
| 3exe_A | 382 | Crystal Structure Of The Pyruvate Dehydrogenase (E1 | 7e-28 | ||
| 3exf_A | 382 | Crystal Structure Of The Pyruvate Dehydrogenase (E1 | 7e-28 | ||
| 3exh_C | 382 | Crystal Structure Of The Pyruvate Dehydrogenase (E1 | 1e-27 | ||
| 2ozl_A | 365 | Human Pyruvate Dehydrogenase S264e Variant Length = | 1e-27 | ||
| 3exi_A | 382 | Crystal Structure Of The Pyruvate Dehydrogenase (E1 | 2e-27 | ||
| 1ni4_A | 365 | Human Pyruvate Dehydrogenase Length = 365 | 4e-25 |
| >pdb|2J9F|A Chain A, Human Branched-Chain Alpha-Ketoacid Dehydrogenase- Decarboxylase E1b Length = 400 | Back alignment and structure |
|
| >pdb|1DTW|A Chain A, Human Branched-Chain Alpha-Keto Acid Dehydrogenase Length = 400 | Back alignment and structure |
|
| >pdb|1X7Y|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-chain Alpha- Ketoacid Dehydrogenase Length = 400 | Back alignment and structure |
|
| >pdb|1X80|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-chain Alpha- Ketoacid Dehydrogenase Length = 400 | Back alignment and structure |
|
| >pdb|1X7W|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-Chain Alpha- Ketoacid Dehydrogenase Length = 400 | Back alignment and structure |
|
| >pdb|2BFF|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400 | Back alignment and structure |
|
| >pdb|1X7X|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-Chain Alpha- Ketoacid Dehydrogenase Length = 400 | Back alignment and structure |
|
| >pdb|1X7Z|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-Chain Alpha- Ketoacid Dehydrogenase Length = 400 | Back alignment and structure |
|
| >pdb|1OLU|A Chain A, Roles Of His291-Alpha And His146-Beta' In The Reductive Acylation Reaction Catalyzed By Human Branched-Chain Alpha-Ketoacid Dehydrogenase Length = 400 | Back alignment and structure |
|
| >pdb|1V16|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation Loop Conformation In The Bckd Machine Length = 400 | Back alignment and structure |
|
| >pdb|2BFC|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400 | Back alignment and structure |
|
| >pdb|1V11|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation Loop Conformation In The Bckd Machine Length = 400 | Back alignment and structure |
|
| >pdb|2BFE|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400 | Back alignment and structure |
|
| >pdb|2BFB|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400 | Back alignment and structure |
|
| >pdb|1V1M|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation Loop Conformation In The Bckd Machine Length = 400 | Back alignment and structure |
|
| >pdb|2BFD|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400 | Back alignment and structure |
|
| >pdb|1UM9|A Chain A, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus Thermophilus Hb8 In Apo-form Length = 367 | Back alignment and structure |
|
| >pdb|3DUF|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate Dehydrogenase Multi-Enzyme Complex Length = 369 | Back alignment and structure |
|
| >pdb|1W85|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound To The Peripheral Subunit Binding Domain Of E2 Length = 368 | Back alignment and structure |
|
| >pdb|1W88|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n, E183q) Bound To The Peripheral Subunit Binding Domain Of E2 Length = 368 | Back alignment and structure |
|
| >pdb|3DVA|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate Dehydrogenase Multi-Enzyme Complex Length = 369 | Back alignment and structure |
|
| >pdb|2BP7|A Chain A, New Crystal Form Of The Pseudomonas Putida Branched-Chain Dehydrogenase (E1) Length = 410 | Back alignment and structure |
|
| >pdb|1QS0|A Chain A, Crystal Structure Of Pseudomonas Putida 2-Oxoisovalerate Dehydrogenase (Branched-Chain Alpha-Keto Acid Dehydrogenase, E1b) Length = 407 | Back alignment and structure |
|
| >pdb|3EXE|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex Length = 382 | Back alignment and structure |
|
| >pdb|3EXF|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex Length = 382 | Back alignment and structure |
|
| >pdb|3EXH|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex Length = 382 | Back alignment and structure |
|
| >pdb|2OZL|A Chain A, Human Pyruvate Dehydrogenase S264e Variant Length = 365 | Back alignment and structure |
|
| >pdb|3EXI|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex With The Subunit-Binding Domain (Sbd) Of E2p, But Sbd Cannot Be Modeled Into The Electron Density Length = 382 | Back alignment and structure |
|
| >pdb|1NI4|A Chain A, Human Pyruvate Dehydrogenase Length = 365 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 380 | |||
| 2bfd_A | 400 | 2-oxoisovalerate dehydrogenase alpha subunit; oxid | 0.0 | |
| 1umd_A | 367 | E1-alpha, 2-OXO acid dehydrogenase alpha subunit; | 0.0 | |
| 1w85_A | 368 | Pyruvate dehydrogenase E1 component, alpha subunit | 1e-179 | |
| 1qs0_A | 407 | 2-oxoisovalerate dehydrogenase alpha-subunit; hete | 1e-178 | |
| 2ozl_A | 365 | PDHE1-A type I, pyruvate dehydrogenase E1 componen | 2e-78 | |
| 3mos_A | 616 | Transketolase, TK; thiamin diphosphate TPP THDP en | 4e-09 | |
| 3ahc_A | 845 | Phosphoketolase, xylulose 5-phosphate/fructose 6-p | 4e-07 | |
| 3l84_A | 632 | Transketolase; TKT, structural genomics, center fo | 2e-04 |
| >2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ... Length = 400 | Back alignment and structure |
|---|
Score = 549 bits (1418), Expect = 0.0
Identities = 177/377 (46%), Positives = 247/377 (65%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K+Y M L TMD I YE+QR
Sbjct: 20 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 79
Query: 61 QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE ++ SAAA+ N D V Q RE GVL++R + ++ F QC+GN +D
Sbjct: 80 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQAREAGVLMYRDYPLELFMAQCYGNISD 139
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 140 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 199
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
D HA NF+A E P+IF CRNNG+AISTP S+Q+R DG +G YG+ SIRVDGND
Sbjct: 200 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVF 259
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
A+Y+A AR A+ E +P LIEA+TYR+GH +TSDDS+ +R VDE+ +W P++R
Sbjct: 260 AVYNATKEARRRAVAENQPFLIEAMTYRIGHASTSDDSSAFRSVDEVNYWDKQDHPISRL 319
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
R ++ S GWW+ + E R R++++ A ++AE+ KP + LF+DVY P+ LR+Q+
Sbjct: 320 RHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQ 379
Query: 361 HSLRETIKKHPQDYPSN 377
SL ++ + + YP +
Sbjct: 380 ESLARHLQTYGEHYPLD 396
|
| >1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A* Length = 367 | Back alignment and structure |
|---|
Score = 511 bits (1319), Expect = 0.0
Identities = 137/357 (38%), Positives = 202/357 (56%), Gaps = 3/357 (0%)
Query: 12 IPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTS 71
R++ ++G+ D + + ++Y DM+ + +D + R G+ SF +
Sbjct: 13 EEPIRLIGEEGEWLGDFP-LDLEGEKLRRLYRDMLAARMLDERYTILIRTGKTSFIAPAA 71
Query: 72 GEEAINIASAAAIKND-DFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIH 130
G EA +A A AI+ D+V P YR+ G+ L G ++E Q KAD KGRQMP H
Sbjct: 72 GHEAAQVAIAHAIRPGFDWVFPYYRDHGLALALGIPLKELLGQMLATKADPNKGRQMPEH 131
Query: 131 YGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSA 190
GS N+FTV+S IA+ +P A GAA ++K+ R AV FGDG TSEGD++A +NF+A
Sbjct: 132 PGSKALNFFTVASPIASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAA 191
Query: 191 VTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAR 250
V AP +FI NN +AIS Q S K A+G+ VDG D LA Y V A
Sbjct: 192 VQGAPAVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAV 251
Query: 251 EMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWW 310
E A P L+E YR G H+++DD ++YRP +E+ +WR +DP+ RFR+++E+ G W
Sbjct: 252 ERARRGEGPSLVELRVYRYGPHSSADDDSRYRPKEEVAFWR-KKDPIPRFRRFLEARGLW 310
Query: 311 NGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETI 367
N + E ++R +R ++ L+EAE+A P +F DV+ P +L QE L+E +
Sbjct: 311 NEEWEEDVREEIRAELERGLKEAEEAGPVPPEWMFEDVFAEKPWHLLRQEALLKEEL 367
|
| >1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A* Length = 368 | Back alignment and structure |
|---|
Score = 501 bits (1291), Expect = e-179
Identities = 130/365 (35%), Positives = 204/365 (55%), Gaps = 11/365 (3%)
Query: 6 ESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRIS 65
E E+ P +++L+++G+ + + ++S+ ++ MV + +D RQGR+
Sbjct: 14 EKVAEQFPTFQILNEEGEVVNEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLG 73
Query: 66 FYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGR 125
FY T+G+EA IAS A++ +DF++P YR+ ++W G + Q F + G
Sbjct: 74 FYAPTAGQEASQIASHFALEKEDFILPGYRDVPQIIWHGLPL----YQAFLFSRGHFHGN 129
Query: 126 QMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAA 185
Q+P N I Q A G A LKM K A A+TY GDGGTS+GDF+
Sbjct: 130 QIPEG-----VNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEG 184
Query: 186 LNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSA 245
+NF+ +AP IF+ +NN +AISTP+ Q + K A G+ I+VDG D LA+Y+A
Sbjct: 185 INFAGAFKAPAIFVVQNNRFAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAA 244
Query: 246 VHAAREMAIGEGRPILIEALTYRVGHHTTS-DDSTKYRPVDEIEWWRTTQDPVTRFRKWI 304
V AARE AI P LIE L +R G HT S DD T+YR + W +DP+ RFRK++
Sbjct: 245 VKAARERAINGEGPTLIETLCFRYGPHTMSGDDPTRYRSKELENEWA-KKDPLVRFRKFL 303
Query: 305 ESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLR 364
E+ G W+ + E+ + +++I A+++A++ K ++DL + +++ P NL+EQ +
Sbjct: 304 EAKGLWSEEEENNVIEQAKEEIKEAIKKADETPKQKVTDLISIMFEELPFNLKEQYEIYK 363
Query: 365 ETIKK 369
E K
Sbjct: 364 EKESK 368
|
| >1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A Length = 407 | Back alignment and structure |
|---|
Score = 500 bits (1289), Expect = e-178
Identities = 127/366 (34%), Positives = 184/366 (50%), Gaps = 9/366 (2%)
Query: 5 SESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI 64
+++++ RVLD+ G + + + M+ + D+ AQRQ ++
Sbjct: 44 ADTADLSYSLVRVLDEQGDA-QGPWAEDIDPQILRQGMRAMLKTRIFDSRMVVAQRQKKM 102
Query: 65 SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKG 124
SFY+ + GEEAI A A+ D P YR+ +L+ R S+ E Q N+ D KG
Sbjct: 103 SFYMQSLGEEAIGSGQALALNRTDMCFPTYRQQSILMARDVSLVEMICQLLSNERDPLKG 162
Query: 125 RQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHA 184
RQ+PI Y + +FT+S +ATQ AVG A A + A + GDG T+E DFH
Sbjct: 163 RQLPIMYSVREAGFFTISGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHT 222
Query: 185 ALNFSAVTEAPVIFICRNNGWAISTPISDQ-FRSDGAVVKGRAYGVRSIRVDGNDALAIY 243
AL F+ V APVI NN WAIST + S +G G+ S+RVDGND +A+Y
Sbjct: 223 ALTFAHVYRAPVILNVVNNQWAISTFQAIAGGESTTFAGRGVGCGIASLRVDGNDFVAVY 282
Query: 244 SAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKW 303
+A A E A P LIE +TYR G H+TSDD +KYRP D+ + DP+ R ++
Sbjct: 283 AASRWAAERARRGLGPSLIEWVTYRAGPHSTSDDPSKYRPADDWSHFP-LGDPIARLKQH 341
Query: 304 IESNGWWNGDIESELRSSVRKQILHALQEAEKAEK------PPISDLFTDVYDVSPSNLR 357
+ G W+ + + ++ A +EAE+ P + +F DVY P +LR
Sbjct: 342 LIKIGHWSEEEHQATTAEFEAAVIAAQKEAEQYGTLANGHIPSAASMFEDVYKEMPDHLR 401
Query: 358 EQEHSL 363
Q L
Sbjct: 402 RQRQEL 407
|
| >2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A* Length = 365 | Back alignment and structure |
|---|
Score = 244 bits (626), Expect = 2e-78
Identities = 91/327 (27%), Positives = 144/327 (44%), Gaps = 9/327 (2%)
Query: 26 PDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRIS-FYLTTSGEEAINIASAAAI 84
++ +K Y M T++ M+ + +Q I F G+EA + A I
Sbjct: 24 GPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGI 83
Query: 85 KNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADY--GKGRQMPIHYGSNKHNYFTVS 142
D ++ YR G RG S++E + G K GKG M H + N++ +
Sbjct: 84 NPTDHLITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSM--HMYA--KNFYGGN 139
Query: 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRN 202
+ Q+P G A A K + KD +T +GDG ++G A N +A+ + P IFIC N
Sbjct: 140 GIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICEN 199
Query: 203 NGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILI 262
N + + T + + R + +RVDG D L + A A PIL+
Sbjct: 200 NRYGMGTSVERA--AASTDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILM 257
Query: 263 EALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSV 322
E TYR H SD YR +EI+ R+ DP+ + + ++ + + E+ V
Sbjct: 258 ELQTYRYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEV 317
Query: 323 RKQILHALQEAEKAEKPPISDLFTDVY 349
RK+I A Q A +PP+ +L +Y
Sbjct: 318 RKEIEDAAQFATADPEPPLEELGYHIY 344
|
| >3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A* Length = 616 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 4e-09
Identities = 36/125 (28%), Positives = 49/125 (39%), Gaps = 18/125 (14%)
Query: 149 LPHAVGAAYALK-MDRKDACAVTY--FGDGGTSEGDFHAALNFSAVTEA--PVIFICRNN 203
L A G AY K D+ Y GDG SEG A+ F A ++ I N
Sbjct: 127 LGAACGMAYTGKYFDKASYR--VYCLLGDGELSEGSVWEAMAF-ASIYKLDNLVAILDIN 183
Query: 204 GWAISTPISDQFRSDGAVVKGR--AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPIL 261
S P Q + D + + R A+G +I VDG+ + A A+ +P
Sbjct: 184 RLGQSDPAPLQHQMD--IYQKRCEAFGWHAIIVDGHSVEELCKAFGQAK------HQPTA 235
Query: 262 IEALT 266
I A T
Sbjct: 236 IIAKT 240
|
| >3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A* Length = 845 | Back alignment and structure |
|---|
Score = 50.9 bits (121), Expect = 4e-07
Identities = 29/127 (22%), Positives = 41/127 (32%), Gaps = 13/127 (10%)
Query: 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEG----DFHAALNFSAVTEAPVIFICRNNG 204
L HA GA M+ GDG G + + + T+ V+ I NG
Sbjct: 181 LSHAYGAV----MNNPSLFVPCIIGDGEAETGPLATGWQSNKLVNPRTDGIVLPILHLNG 236
Query: 205 WAISTPISDQFRSDGAVV-KGRAYGVRSIRV----DGNDALAIYSAVHAAREMAIGEGRP 259
+ I+ P SD + R G D D ++I+ E E
Sbjct: 237 YKIANPTILARISDEELHDFFRGMGYHPYEFVAGFDNEDHMSIHRRFAELFETIFDEICD 296
Query: 260 ILIEALT 266
I A T
Sbjct: 297 IKAAAQT 303
|
| >3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A* Length = 632 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 2e-04
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 9/67 (13%)
Query: 202 NNGWAISTPISDQFRSDGAVVKGR--AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRP 259
+N +I + F + VK R A G + ++G+D I A+ A++ +P
Sbjct: 181 SNNISIEGDVGLAFNEN---VKMRFEAQGFEVLSINGHDYEEINKALEQAKK----STKP 233
Query: 260 ILIEALT 266
LI A T
Sbjct: 234 CLIIAKT 240
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 380 | |||
| 2bfd_A | 400 | 2-oxoisovalerate dehydrogenase alpha subunit; oxid | 100.0 | |
| 1qs0_A | 407 | 2-oxoisovalerate dehydrogenase alpha-subunit; hete | 100.0 | |
| 1w85_A | 368 | Pyruvate dehydrogenase E1 component, alpha subunit | 100.0 | |
| 1umd_A | 367 | E1-alpha, 2-OXO acid dehydrogenase alpha subunit; | 100.0 | |
| 2ozl_A | 365 | PDHE1-A type I, pyruvate dehydrogenase E1 componen | 100.0 | |
| 2yic_A | 868 | 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.9 | 100.0 | |
| 2xt6_A | 1113 | 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET | 100.0 | |
| 2jgd_A | 933 | 2-oxoglutarate dehydrogenase E1 component; flavopr | 100.0 | |
| 2o1s_A | 621 | 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia | 100.0 | |
| 1gpu_A | 680 | Transketolase; transferase(ketone residues); HET: | 99.97 | |
| 1r9j_A | 673 | Transketolase; domains, EACH of the alpha/beta typ | 99.97 | |
| 3rim_A | 700 | Transketolase, TK; TPP, transferase; HET: TPP; 2.4 | 99.97 | |
| 2e6k_A | 651 | Transketolase; structural genomics, NPPSFA, nation | 99.97 | |
| 3mos_A | 616 | Transketolase, TK; thiamin diphosphate TPP THDP en | 99.97 | |
| 2o1x_A | 629 | 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, | 99.97 | |
| 1itz_A | 675 | Transketolase; calvin cycle, cofactor, thiamine py | 99.97 | |
| 3l84_A | 632 | Transketolase; TKT, structural genomics, center fo | 99.96 | |
| 2r8o_A | 669 | Transketolase 1, TK 1; reaction intermediate, calc | 99.96 | |
| 3uk1_A | 711 | Transketolase; structural genomics, seattle struct | 99.96 | |
| 3m49_A | 690 | Transketolase; alpha-beta-alpha sandwich, csgid, t | 99.96 | |
| 3kom_A | 663 | Transketolase; rossmann fold, csgid, transferase, | 99.96 | |
| 2qtc_A | 886 | Pyruvate dehydrogenase E1 component; thiamin dipho | 99.94 | |
| 4feg_A | 603 | Pyruvate oxidase; carbanion, structure activity re | 99.9 | |
| 3ahc_A | 845 | Phosphoketolase, xylulose 5-phosphate/fructose 6-p | 99.76 | |
| 1v5e_A | 590 | Pyruvate oxidase; oxidoreductase, flavoprotein; HE | 99.69 | |
| 2pan_A | 616 | Glyoxylate carboligase; thiamin-diphosphate (THDP) | 99.67 | |
| 2uz1_A | 563 | Benzaldehyde lyase; thiamine diphosphate, thiamine | 99.65 | |
| 2vk8_A | 563 | Pyruvate decarboxylase isozyme 1; asymmetric activ | 99.65 | |
| 1q6z_A | 528 | BFD, BFDC, benzoylformate decarboxylase; lyase, ca | 99.64 | |
| 1ozh_A | 566 | ALS, acetolactate synthase, catabolic; acetohydrox | 99.64 | |
| 2iht_A | 573 | Carboxyethylarginine synthase; thiamin diphosphate | 99.63 | |
| 3eya_A | 549 | Pyruvate dehydrogenase [cytochrome]; pyruvate oxid | 99.62 | |
| 2pgn_A | 589 | Cyclohexane-1,2-dione hydrolase (CDH); three alpha | 99.62 | |
| 1t9b_A | 677 | Acetolactate synthase, mitochondrial; acetohydroxy | 99.62 | |
| 2vbf_A | 570 | Branched-chain alpha-ketoacid decarboxylase; KDCA, | 99.61 | |
| 1ybh_A | 590 | Acetolactate synthase, chloroplast; acetohydroxyac | 99.6 | |
| 2vbi_A | 566 | Pyruvate decarboxylase; thiamine pyrophosphate, ly | 99.6 | |
| 2nxw_A | 565 | Phenyl-3-pyruvate decarboxylase; thiamine pyrophos | 99.6 | |
| 2wvg_A | 568 | PDC, pyruvate decarboxylase; thiamine diphosphate, | 99.59 | |
| 2c31_A | 568 | Oxalyl-COA decarboxylase; oxalate, thiamin diphosp | 99.59 | |
| 1ovm_A | 552 | Indole-3-pyruvate decarboxylase; thiamine diphosph | 99.59 | |
| 2q28_A | 564 | Oxalyl-COA decarboxylase; lyase, oxalate degradati | 99.58 | |
| 2x7j_A | 604 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene - | 99.53 | |
| 3hww_A | 556 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- | 99.5 | |
| 3lq1_A | 578 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- | 99.47 | |
| 2c42_A | 1231 | Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, | 98.96 | |
| 2iht_A | 573 | Carboxyethylarginine synthase; thiamin diphosphate | 95.08 | |
| 1ybh_A | 590 | Acetolactate synthase, chloroplast; acetohydroxyac | 95.06 | |
| 2uz1_A | 563 | Benzaldehyde lyase; thiamine diphosphate, thiamine | 95.05 | |
| 1ozh_A | 566 | ALS, acetolactate synthase, catabolic; acetohydrox | 94.96 | |
| 2pgn_A | 589 | Cyclohexane-1,2-dione hydrolase (CDH); three alpha | 94.83 | |
| 2vbi_A | 566 | Pyruvate decarboxylase; thiamine pyrophosphate, ly | 94.46 | |
| 2wvg_A | 568 | PDC, pyruvate decarboxylase; thiamine diphosphate, | 94.45 | |
| 2q28_A | 564 | Oxalyl-COA decarboxylase; lyase, oxalate degradati | 94.36 | |
| 3eya_A | 549 | Pyruvate dehydrogenase [cytochrome]; pyruvate oxid | 94.35 | |
| 1t9b_A | 677 | Acetolactate synthase, mitochondrial; acetohydroxy | 94.24 | |
| 2nxw_A | 565 | Phenyl-3-pyruvate decarboxylase; thiamine pyrophos | 94.09 | |
| 2c31_A | 568 | Oxalyl-COA decarboxylase; oxalate, thiamin diphosp | 94.06 | |
| 1v5e_A | 590 | Pyruvate oxidase; oxidoreductase, flavoprotein; HE | 93.93 | |
| 1yd7_A | 395 | 2-keto acid:ferredoxin oxidoreductase subunit alph | 93.78 | |
| 4feg_A | 603 | Pyruvate oxidase; carbanion, structure activity re | 93.59 | |
| 2x7j_A | 604 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene - | 92.45 | |
| 2pan_A | 616 | Glyoxylate carboligase; thiamin-diphosphate (THDP) | 92.16 | |
| 3mos_A | 616 | Transketolase, TK; thiamin diphosphate TPP THDP en | 92.16 | |
| 2vk8_A | 563 | Pyruvate decarboxylase isozyme 1; asymmetric activ | 92.14 | |
| 1q6z_A | 528 | BFD, BFDC, benzoylformate decarboxylase; lyase, ca | 91.89 | |
| 2r8o_A | 669 | Transketolase 1, TK 1; reaction intermediate, calc | 91.84 | |
| 2e6k_A | 651 | Transketolase; structural genomics, NPPSFA, nation | 91.75 | |
| 2o1s_A | 621 | 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia | 91.67 | |
| 2vbf_A | 570 | Branched-chain alpha-ketoacid decarboxylase; KDCA, | 91.65 | |
| 3lq1_A | 578 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- | 91.14 | |
| 1itz_A | 675 | Transketolase; calvin cycle, cofactor, thiamine py | 91.0 | |
| 3kom_A | 663 | Transketolase; rossmann fold, csgid, transferase, | 90.98 | |
| 1qs0_B | 338 | 2-oxoisovalerate dehydrogenase beta-subunit; heter | 90.73 | |
| 1gpu_A | 680 | Transketolase; transferase(ketone residues); HET: | 90.61 | |
| 1ovm_A | 552 | Indole-3-pyruvate decarboxylase; thiamine diphosph | 90.16 | |
| 3l84_A | 632 | Transketolase; TKT, structural genomics, center fo | 89.96 | |
| 1r9j_A | 673 | Transketolase; domains, EACH of the alpha/beta typ | 89.49 | |
| 3m49_A | 690 | Transketolase; alpha-beta-alpha sandwich, csgid, t | 88.73 | |
| 2o1x_A | 629 | 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, | 88.37 | |
| 2ozl_B | 341 | PDHE1-B, pyruvate dehydrogenase E1 component subun | 88.25 | |
| 1w85_B | 324 | Pyruvate dehydrogenase E1 component, beta subunit; | 85.87 | |
| 3uk1_A | 711 | Transketolase; structural genomics, seattle struct | 84.89 | |
| 3hww_A | 556 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- | 84.72 | |
| 3rim_A | 700 | Transketolase, TK; TPP, transferase; HET: TPP; 2.4 | 84.55 | |
| 1ik6_A | 369 | Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, o | 84.13 | |
| 1umd_B | 324 | E1-beta, 2-OXO acid dehydrogenase beta subunit; al | 83.54 | |
| 2bfd_B | 342 | 2-oxoisovalerate dehydrogenase beta subunit; oxido | 80.65 |
| >2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-83 Score=644.53 Aligned_cols=379 Identities=47% Similarity=0.861 Sum_probs=345.7
Q ss_pred CccccCCCCCCCCeeEEeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhhHHHHHH
Q 016903 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIAS 80 (380)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~e~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~G~Ea~~~~~ 80 (380)
|+|++++....+|++||||.||++++++..+.+++++++++|+.|+++|.||+++..++++|+++|++++.||||+++|+
T Consensus 20 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~e~~~~~y~~M~~~r~fe~~~~~~~~~gri~~~~~~~GqEa~~vg~ 99 (400)
T 2bfd_A 20 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGS 99 (400)
T ss_dssp CCCCCCCCSSCSCEECSBCTTSCBSCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCCCCTTCHHHHHHH
T ss_pred eeeccCcccCCCCeeEEECCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeecCCChHHHHHHH
Confidence 68999988889999999999999988876688999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCcEEEcccccHHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCccccCcccccchHHHHHHHHHhh
Q 016903 81 AAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALK 160 (380)
Q Consensus 81 ~~~l~~~D~v~~~yR~~~~~l~~G~~~~~~~~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k 160 (380)
+.+|+++|+|+++||+|++++++|++++++|++++|+.+++++|+++++|+..+..++..++|+||+++|+|+|+|+|.+
T Consensus 100 ~~al~~~D~v~~~yR~~~~~~~~G~~~~~~l~e~~g~~~g~~~G~~~~~H~~~~~~~~~~~~g~lG~~lp~AvG~AlA~~ 179 (400)
T 2bfd_A 100 AAALDNTDLVFGQAREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAK 179 (400)
T ss_dssp HHTSCTTSEEECCSCCHHHHHHTTCCHHHHHHHHHTCTTCTTTTCSCSSCCCBTTTTBCCCCSSTTTHHHHHHHHHHHHH
T ss_pred HHhcCCCCEEEecCcCHHHHHHcCCCHHHHHHHhcCCCCCCCCCCCCCcCCcccccCccccCccccccccHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999998788888899999999999999999999
Q ss_pred hcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCCCHH
Q 016903 161 MDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240 (380)
Q Consensus 161 ~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~ 240 (380)
+++++++|||++|||++++|.+||+||+|++|+||+||||+||+|++++++....+..++++++++|||++++|||+|+.
T Consensus 180 ~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~ 259 (400)
T 2bfd_A 180 RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVF 259 (400)
T ss_dssp HHTCCCCEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSSSTTGGGTGGGTCEEEEEETTCHH
T ss_pred hhCCCCeEEEEECchhhhcChHHHHHHHHHHHCcCEEEEEECCceeeeecccccCCCCCHHHHHHHcCCcEEEEeCCCHH
Confidence 99999999999999999999999999999999999999999999999999888877789999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChhhHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHH
Q 016903 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRS 320 (380)
Q Consensus 241 av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~e~~~i~~ 320 (380)
+|+.++++|++++|++++|+||+++|||++|||++|+|..||+++|++.|++..|||.+++++|++.|+||++++++|++
T Consensus 260 av~~a~~~A~~~ar~~~~P~lIe~~tyR~~gHs~~D~~~~Yr~~~e~~~~~~~~dPl~~~~~~L~~~g~~~~~~~~~i~~ 339 (400)
T 2bfd_A 260 AVYNATKEARRRAVAENQPFLIEAMTYRIGHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRK 339 (400)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEEECCCCC--CC-------------------CCHHHHHHHHHTTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEEeeeeCCCCCCCCCccCCCHHHHHHHHhcCCHHHHHHHHHHHCCCCChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999843589999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCccccccccCCCccHHHHHHHHHHHHHhCCCCCCCCCC
Q 016903 321 SVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYPSNVP 379 (380)
Q Consensus 321 ~~~~~v~~a~~~a~~~p~p~~~~~~~~vy~~~~~~~~~~~~~l~~~~~~~p~~~~~~~~ 379 (380)
+++++|++++++|++.|.|+++++|++||++.++++.+|++.|.+.+.++|++|++++|
T Consensus 340 ~~~~~v~~a~~~a~~~~~p~~~~~~~~vy~~~~~~l~~q~~~~~~~~~~~~~~~~~~~~ 398 (400)
T 2bfd_A 340 QSRRKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYPLDHF 398 (400)
T ss_dssp HHHHHHHHHHHHHHHSCBCCGGGGSTTSSSSCCHHHHHHHHHHHHHHHHHGGGSCGGGB
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHhhccCCHHHHHHHHHHHHHHHhCCCcCCcccc
Confidence 99999999999999999999999999999999999999999999999999999998765
|
| >1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-81 Score=624.29 Aligned_cols=350 Identities=36% Similarity=0.555 Sum_probs=336.0
Q ss_pred CCeeEEeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhhHHHHHHHhcCCCCcEEE
Q 016903 12 IPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKNDDFVV 91 (380)
Q Consensus 12 ~~~~~~~~~~g~~~~~~~~~~~~~e~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~G~Ea~~~~~~~~l~~~D~v~ 91 (380)
.|++||||.+|+++++. .+.+++++++++|+.|+++|.||+++..+++||+++|+|++.||||+++|++.+|+++|+++
T Consensus 51 ~~~~~~ld~~g~~~~~~-~~~~~~e~~~~~y~~M~~~R~fe~~~~~~~~qgr~~~~~~~~GqEA~~vg~~~al~~~D~v~ 129 (407)
T 1qs0_A 51 YSLVRVLDEQGDAQGPW-AEDIDPQILRQGMRAMLKTRIFDSRMVVAQRQKKMSFYMQSLGEEAIGSGQALALNRTDMCF 129 (407)
T ss_dssp TSCBCCBCTTSCBCSGG-GSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCCCCTTTHHHHHHHHHHSCTTSEEE
T ss_pred CCeEEEECCCCCCCCcC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCcCCCChHHHHHHHHHhcCCCCEEE
Confidence 57899999999988764 57899999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCccccCcccccchHHHHHHHHHhhhcCCCCeeEEE
Q 016903 92 PQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTY 171 (380)
Q Consensus 92 ~~yR~~~~~l~~G~~~~~~~~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~ 171 (380)
++||+|++++++|+++.++|++++|+.++.++|+++++|+.....++++.+|+||+++|+|+|+|+|.++++++++|||+
T Consensus 130 ~~yR~~~~~l~~g~~~~~i~~el~g~~~~~~~G~g~~~h~~~~~~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~vv~i 209 (407)
T 1qs0_A 130 PTYRQQSILMARDVSLVEMICQLLSNERDPLKGRQLPIMYSVREAGFFTISGNLATQFVQAVGWAMASAIKGDTKIASAW 209 (407)
T ss_dssp CCSSCHHHHHHTTCCHHHHHHHHHTCTTCTTTTCSCTTCCCBGGGTBCCCCSSSSHHHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred ecccchHHHHhcCCCHHHHHHHHhCCCCCCCCCCCceeecchhccCccccccccccchhHHHHHHHHHHHhCCCCEEEEE
Confidence 99999999999999999999999999999999999999998877899999999999999999999999999999999999
Q ss_pred eCccccCcchHHHHHHHHHHcCCCEEEEEEcCCccccccccccc-CCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHH
Q 016903 172 FGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQF-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAR 250 (380)
Q Consensus 172 ~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~-~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~ 250 (380)
+|||++++|.+||+||+|++|+||+||||+||+|+++++....+ ...+++++|++|||++++|||+|+++|+.++++|+
T Consensus 210 ~GDGa~~~G~~~Eal~~A~~~~lpvi~Vv~NN~~gi~~~~~~~~~~~~d~a~~a~a~G~~~~~VdG~D~~av~~a~~~A~ 289 (407)
T 1qs0_A 210 IGDGATAESDFHTALTFAHVYRAPVILNVVNNQWAISTFQAIAGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWAA 289 (407)
T ss_dssp EETGGGGSHHHHHHHHHHHHHTCCEEEEEEECSEETTEEGGGGTTTTCCSTHHHHHTTCEEEEEETTCHHHHHHHHHHHH
T ss_pred ECCchhhcChHHHHHHHHHHHCcCEEEEEECCCcceeeccccccCCCCCHHHHHHHcCCeEEEEcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999887665 56789999999999999999999999999999999
Q ss_pred HHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChhhHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Q 016903 251 EMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHAL 330 (380)
Q Consensus 251 ~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~e~~~i~~~~~~~v~~a~ 330 (380)
+++|++++|+|||++|||.+|||++|||..||+++|++.|+ ++|||.+|+++|+++|+||++++++|+++++++|++++
T Consensus 290 ~~ar~~~gP~lIe~~t~R~~Ghs~~Dd~~~Yr~~~e~~~~~-~~DPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~ 368 (407)
T 1qs0_A 290 ERARRGLGPSLIEWVTYRAGPHSTSDDPSKYRPADDWSHFP-LGDPIARLKQHLIKIGHWSEEEHQATTAEFEAAVIAAQ 368 (407)
T ss_dssp HHHHTTSCCEEEEEECCCCSCSSTTCCGGGTSCTTHHHHCT-TCCHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCEEEEEEeeccCCcCCCCCccccCCHHHHHHHh-cCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998 59999999999999999999999999999999999999
Q ss_pred HHHHh------CCCCCCCccccccccCCCccHHHHHHHH
Q 016903 331 QEAEK------AEKPPISDLFTDVYDVSPSNLREQEHSL 363 (380)
Q Consensus 331 ~~a~~------~p~p~~~~~~~~vy~~~~~~~~~~~~~l 363 (380)
++|++ +|.|+++++|+|||+++|+++++|++++
T Consensus 369 ~~a~~~~~~~~~p~p~~~~~~~~vy~~~~~~l~~q~~~~ 407 (407)
T 1qs0_A 369 KEAEQYGTLANGHIPSAASMFEDVYKEMPDHLRRQRQEL 407 (407)
T ss_dssp HHHHTTCCSSSCCCCCSSGGGSSSSSSCCHHHHHHHHTC
T ss_pred HHHHhcccccCCCCCCHHHHHhhccCCCCHHHHHHHHhC
Confidence 99998 5799999999999999999999998753
|
| >1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-79 Score=607.36 Aligned_cols=349 Identities=36% Similarity=0.617 Sum_probs=325.3
Q ss_pred CCCCeeEEeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhhHHHHHHHhcCCCCcE
Q 016903 10 ERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKNDDF 89 (380)
Q Consensus 10 ~~~~~~~~~~~~g~~~~~~~~~~~~~e~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~G~Ea~~~~~~~~l~~~D~ 89 (380)
...|++||||.||++++++..+.+++++++++|+.|+++|.||+++..++++|+++|+|++.||||+++|++.+|+++|+
T Consensus 18 ~~~~~~~~l~~~g~~~~~~~~~~l~~e~l~~~y~~M~~~R~fe~~~~~~~~qgr~g~~~~~~G~Ea~~vg~~~~l~~~D~ 97 (368)
T 1w85_A 18 EQFPTFQILNEEGEVVNEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLGFYAPTAGQEASQIASHFALEKEDF 97 (368)
T ss_dssp HTCCEECSBCTTSCBSCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSCCCCTTCHHHHHHHHHTCCTTCE
T ss_pred CCCCeeEEECCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCCHHHHHHHHHHhcCCcCE
Confidence 35689999999999988765678999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccccHHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCccccCcccccchHHHHHHHHHhhhcCCCCeeE
Q 016903 90 VVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAV 169 (380)
Q Consensus 90 v~~~yR~~~~~l~~G~~~~~~~~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv 169 (380)
++++||+|++++++|.++..+|++++|+.+ |+ ++| ...++.+++|+||+++|+|+|+|+|.++++++++||
T Consensus 98 v~~~~R~~~~~~~~G~~~~~~~~el~G~~~----G~--~~h---~~~~~~~~~g~lG~~lp~AvG~A~A~~~~~~~~~vv 168 (368)
T 1w85_A 98 ILPGYRDVPQIIWHGLPLYQAFLFSRGHFH----GN--QIP---EGVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAI 168 (368)
T ss_dssp EECCSSCHHHHHHTTCCHHHHHHHHHTCGG----GG--CCC---TTCCBCCCCCSTTHHHHHHHHHHHHHHHTTCSCCEE
T ss_pred EEecchhHHHHHhcCCCHHHHHHHHCCCCC----CC--CCC---cccccCCCccccCccccHHHHHHHHhHhhCCCCeEE
Confidence 999999999999999999999999999854 33 345 356888899999999999999999999999999999
Q ss_pred EEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHH
Q 016903 170 TYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAA 249 (380)
Q Consensus 170 ~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a 249 (380)
|++|||++++|.++|+||+|++|+||+||||+||+|+++++.....+.++++++|++|||++++|||+|+.+|+.++++|
T Consensus 169 ~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~gi~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~av~~a~~~A 248 (368)
T 1w85_A 169 TYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAA 248 (368)
T ss_dssp EEEETGGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSCSCSGGGGGGTTCCEEEEETTCHHHHHHHHHHH
T ss_pred EEEchhhhhhcHHHHHHHHHHHHCcCEEEEEEcCCccceeccccccCCCCHHHHHHHCCCCEEEEcCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998887777789999999999999999999999999999999
Q ss_pred HHHhhccCCcEEEEEEeecCCCCC-CCCCCCCCCChhhHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 016903 250 REMAIGEGRPILIEALTYRVGHHT-TSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILH 328 (380)
Q Consensus 250 ~~~ar~~~gP~lIe~~t~R~~gHs-~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~e~~~i~~~~~~~v~~ 328 (380)
++++|++++|+|||++|||.+||| ++|||..||+++|++.|+ ++|||.+|+++|+++|+||++++++|+++++++|++
T Consensus 249 ~~~~r~~~gP~lIe~~t~r~~gHs~~~Ddp~~yr~~~e~~~~~-~~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~ 327 (368)
T 1w85_A 249 RERAINGEGPTLIETLCFRYGPHTMSGDDPTRYRSKELENEWA-KKDPLVRFRKFLEAKGLWSEEEENNVIEQAKEEIKE 327 (368)
T ss_dssp HHHHHTTSCCEEEEEECCCSSCSCSSCC------CHHHHHHHH-TTCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCEEEEEEeeccCCCCCCCCCccccCCHHHHHHHh-cCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 999999999999999998 499999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCccccccccCCCccHHHHHHHHHHHHH
Q 016903 329 ALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIK 368 (380)
Q Consensus 329 a~~~a~~~p~p~~~~~~~~vy~~~~~~~~~~~~~l~~~~~ 368 (380)
++++|+++|.|+++++|+|||+++|+++++|++++++.++
T Consensus 328 a~~~a~~~p~p~~~~~~~~vy~~~~~~l~~q~~~~~~~~~ 367 (368)
T 1w85_A 328 AIKKADETPKQKVTDLISIMFEELPFNLKEQYEIYKEKES 367 (368)
T ss_dssp HHHHHHTSCCCCHHHHHHTSCSSCCHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCCCCHHHHHhhccCCCChHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999977653
|
| >1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-76 Score=587.19 Aligned_cols=355 Identities=39% Similarity=0.624 Sum_probs=341.1
Q ss_pred CCCCeeEEeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhhHHHHHHHhcCCCC-c
Q 016903 10 ERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKND-D 88 (380)
Q Consensus 10 ~~~~~~~~~~~~g~~~~~~~~~~~~~e~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~G~Ea~~~~~~~~l~~~-D 88 (380)
...|++||||+||+++++ ..+.+++++++++|+.|+++|.||.++..++++|++++++++.|+|++++++..+|+++ |
T Consensus 11 ~~~~~~~~l~~~g~~~~~-~~~~l~~~~l~~l~~~m~~~R~~~~~~~~~~~~G~~g~~~~~~G~ea~~~~~~~~l~~~rD 89 (367)
T 1umd_A 11 FTEEPIRLIGEEGEWLGD-FPLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHEAAQVAIAHAIRPGFD 89 (367)
T ss_dssp SCSSCBCCBCTTSCBCCS-SCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCCCCCTTCHHHHHHHHHHSCTTTS
T ss_pred CCCCeEEEECCCCCCCCc-cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCCCCcCHHHHHHHHHHHcCCCCc
Confidence 467899999999998887 46789999999999999999999999999999999999999999999999999999998 9
Q ss_pred EEEcccccHHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCccccCcccccchHHHHHHHHHhhhcCCCCee
Q 016903 89 FVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACA 168 (380)
Q Consensus 89 ~v~~~yR~~~~~l~~G~~~~~~~~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~v 168 (380)
+++++||+|++++.+|+++.++|++++|+.+|++.|+++++|+..+..++.+++|++|+++|+|+|+|+|.|+.+++++|
T Consensus 90 ~i~~s~r~~~~~~~~G~~~~~~l~~~~g~~~g~~~G~~~~~h~~~~~~~~~~~~g~lG~~l~~a~G~A~a~k~~~~~~~v 169 (367)
T 1umd_A 90 WVFPYYRDHGLALALGIPLKELLGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVPPAAGAAISMKLLRTGQVA 169 (367)
T ss_dssp EEECCTTTHHHHHHHTCCHHHHHHHHHTBTTCTTTTCSCSSCCCBTTTTBCCCCSSTTTTHHHHHHHHHHHHHTTCCCCE
T ss_pred EEEeCcHHHHHHHHcCCCHHHHHHHHhCCCCCCCCCCCCCCCCcccccCcCCCCchhhhhhhHHHHHHHHHHHhCCCCeE
Confidence 99999999999999999999999999999999999999999998777888889999999999999999999999999999
Q ss_pred EEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHH
Q 016903 169 VTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHA 248 (380)
Q Consensus 169 v~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~ 248 (380)
||++|||++++|.++|+|++|++|+||+||||+||+|+++++.....+..++++++++|||++++|||+|+.+|+.++++
T Consensus 170 v~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~gi~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~av~~a~~~ 249 (367)
T 1umd_A 170 VCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKE 249 (367)
T ss_dssp EEEEETGGGGSHHHHHHHHHHHHTTCSEEEEEEECSEETTEEHHHHCSSSCSGGGGGGTTSCEEEEETTCHHHHHHHHHH
T ss_pred EEEEcccccccCcHHHHHHHHHHhCcCEEEEEecCCeeeccChhhccCCCCHHHHHHHcCCcEEEeCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999887777778999999999999999999999999999999
Q ss_pred HHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChhhHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 016903 249 AREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILH 328 (380)
Q Consensus 249 a~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~e~~~i~~~~~~~v~~ 328 (380)
|+++++++++|+||+++|||.+|||++|+|..||+++|++.|+ ++|||.+|+++|+++|+||++++++|+++++++|++
T Consensus 250 A~~~a~~~~gP~lIe~~t~r~~Ghs~~D~~~~Yr~~~e~~~~~-~~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~ 328 (367)
T 1umd_A 250 AVERARRGEGPSLVELRVYRYGPHSSADDDSRYRPKEEVAFWR-KKDPIPRFRRFLEARGLWNEEWEEDVREEIRAELER 328 (367)
T ss_dssp HHHHHHTTCCCEEEEEECCCCSCSSTTCCGGGTSCHHHHHHHH-TTCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEEEEeecCCCCCCCCCccccCCHHHHHHHH-cCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998 499999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCccccccccCCCccHHHHHHHHHHH
Q 016903 329 ALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRET 366 (380)
Q Consensus 329 a~~~a~~~p~p~~~~~~~~vy~~~~~~~~~~~~~l~~~ 366 (380)
++++|+++|.|+++++|+|||+++|+++++|++++++.
T Consensus 329 a~~~a~~~~~p~~~~~~~~vy~~~~~~l~~q~~~~~~~ 366 (367)
T 1umd_A 329 GLKEAEEAGPVPPEWMFEDVFAEKPWHLLRQEALLKEE 366 (367)
T ss_dssp HHHHHHHTCBCCGGGGGTTSSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHhhhcCCCChhHHHHHHHHHhh
Confidence 99999999999999999999999999999999998654
|
| >2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-76 Score=581.34 Aligned_cols=327 Identities=28% Similarity=0.433 Sum_probs=308.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccccccchhhHHHHHHHhcCCCCcEEEcccccHHHHHHcCCC
Q 016903 28 SSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFS 106 (380)
Q Consensus 28 ~~~~~~~~e~l~~~y~~M~~~R~~e~~~~~~~~~g~i-~~~~~~~G~Ea~~~~~~~~l~~~D~v~~~yR~~~~~l~~G~~ 106 (380)
++.+.+++++++++|+.|+++|.||+++..++++|++ +|+|++.||||+++|++.+|+++|+++++||+|++++++|++
T Consensus 26 ~~~~~l~~e~l~~~yr~M~~~R~~e~~~~~l~~~g~i~gf~~~~~GqEa~~vg~~~al~~~D~i~~~yR~~~~~~~~G~~ 105 (365)
T 2ozl_A 26 PVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRAHGFTFTRGLS 105 (365)
T ss_dssp CSEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCCCCCTTCHHHHHHHHHTSCTTSEEECCSCCHHHHHHTTCC
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCCChHHHHHHHHHhhCCCCEEehHHHHHHHHHhcCCC
Confidence 3456799999999999999999999999999999999 799999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCCCCCccccCCCCCCccccCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHH
Q 016903 107 MQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAAL 186 (380)
Q Consensus 107 ~~~~~~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal 186 (380)
+.++|++++|+.+|+++|+++++|+.+ .++++.+|+||+++|+|+|+|+|.++++++++|||++|||++++|.+||+|
T Consensus 106 ~~~i~~e~~g~~~g~~~g~gg~~H~~~--~~~~~~~g~~G~~lp~A~G~A~A~~~~~~~~~vv~~~GDGa~~~G~~~Eal 183 (365)
T 2ozl_A 106 VREILAELTGRKGGCAKGKGGSMHMYA--KNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAY 183 (365)
T ss_dssp HHHHHHHHTTCTTSTTTTSSCTTCCCB--TTBCCCCCSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCCCCCCCCCcCc--cccCCCcchhhhhhHHHHHHHHHHHhcCCCceEEEEECchhhhccHHHHHH
Confidence 999999999999999999999999854 478888899999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 187 NFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 187 ~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
|+|++|+||+||||+||+|+++++.......++++. ++||+++++|||+|+++|+.++++|++++|+++||+|||++|
T Consensus 184 n~A~~~~lpvi~vv~NN~~g~~t~~~~~~~~~~~~~--ra~g~p~~~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t 261 (365)
T 2ozl_A 184 NMAALWKLPCIFICENNRYGMGTSVERAAASTDYYK--RGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQT 261 (365)
T ss_dssp HHHHHTTCCEEEEEEECSEETTEEHHHHCSCCCGGG--TTTTSCEEEEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEEC
T ss_pred HHHHHHCcCEEEEEECCCcccCCCcccccCCCCHHH--HhCCCCEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 999999999999999999999998776666677876 689999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCCCCCCChhhHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccc
Q 016903 267 YRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFT 346 (380)
Q Consensus 267 ~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~e~~~i~~~~~~~v~~a~~~a~~~p~p~~~~~~~ 346 (380)
||.+|||++|++..||+++|++.|++.+|||.+|+++|+++|+||++++++|+++++++|++++++|+++|.|+++++|+
T Consensus 262 ~R~~gHs~~D~~~~Yr~~~e~~~~~~~~dpi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~p~p~~~~~~~ 341 (365)
T 2ozl_A 262 YRYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQFATADPEPPLEELGY 341 (365)
T ss_dssp CCSSCSSTTCCSCSSSCHHHHHHHHHHHCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHSCCCCGGGTTC
T ss_pred ecCCCCCCCCCCcccCCHHHHHHHHhCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHh
Confidence 99999999998888999999999974579999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCc-cHHH
Q 016903 347 DVYDVSPS-NLRE 358 (380)
Q Consensus 347 ~vy~~~~~-~~~~ 358 (380)
|||+++++ .+++
T Consensus 342 ~vy~~~~~~~~~~ 354 (365)
T 2ozl_A 342 HIYSSDPPFEVRG 354 (365)
T ss_dssp SSSSSCCCEEEEC
T ss_pred hhcCCCChhhhcc
Confidence 99998765 4433
|
| >2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-60 Score=509.29 Aligned_cols=343 Identities=15% Similarity=0.139 Sum_probs=283.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhhHHHHHHHhc------CCCCcEEEc-ccccHHHHHH-
Q 016903 31 VKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAA------IKNDDFVVP-QYREPGVLLW- 102 (380)
Q Consensus 31 ~~~~~e~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~G~Ea~~~~~~~~------l~~~D~v~~-~yR~~~~~l~- 102 (380)
+.+++++++++|+.|+++|.||+++..++++|+. | +..||||++++++.+ ++++|++++ +||+|+++|+
T Consensus 113 ~~~s~e~~~~~y~~m~~~R~fE~~l~~~~~~~k~-~--g~~G~Ea~~~g~~~~l~~~~~l~~~D~v~gm~hRg~~~~Lan 189 (868)
T 2yic_A 113 DKPTVAEQKYILSKLNAAEAFETFLQTKYVGQKR-F--SLEGAETVIPMMDAVIDQCAEHGLDEVVIAMPHRGRLNVLAN 189 (868)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCGG-G--CCTTCTTHHHHHHHHHHHHHHTTCSEEEEECCSTTHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-c--cCCChHHHHHHHHHHHHHhhhCCCCCEEEeccccchHHHHHH
Confidence 5799999999999999999999999999988874 2 349999999998876 558999998 7999999999
Q ss_pred -cCCCHHHHHHHhhcCCCCC-C-CCCCCccccCCCC------------CCccccCcccccchHHHHHHHHHhhhcC----
Q 016903 103 -RGFSMQEFANQCFGNKADY-G-KGRQMPIHYGSNK------------HNYFTVSSTIATQLPHAVGAAYALKMDR---- 163 (380)
Q Consensus 103 -~G~~~~~~~~e~~g~~~~~-~-~G~~~~~H~~~~~------------~~~~~~~g~lG~~lp~A~G~A~A~k~~~---- 163 (380)
+|+++.++|+|++|+.+++ + .|+++++|++... .++.+++|+||+++|+|+|+|+|.|+++
T Consensus 190 ~~G~~~~~i~ae~~G~~~g~~~~g~gdv~~Hlg~~~~~~~~~g~~~v~l~l~~n~s~Lg~~~P~A~G~A~A~k~~~~~~~ 269 (868)
T 2yic_A 190 IVGKPYSQIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQMFGDNDIEVSLTANPSHLEAVDPVLEGLVRAKQDLLDTGE 269 (868)
T ss_dssp TTCCCHHHHTTTCC------------CGGGTCCEEEEEECSSSSCEEEEEECCCCSSTTTTHHHHHHHHHHHHHHHTCST
T ss_pred HhCCCHHHHHHHhcCCCCCCccCCCCCccccCCccccccccCCCcceeeeecCCCccccccccHHHHHHHHHHhhccCCc
Confidence 9999999999999999877 4 4566789976432 2456678999999999999999999864
Q ss_pred ------CCCeeEEEeCcccc-CcchHHHHHHHHHHcCCC---EEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEE
Q 016903 164 ------KDACAVTYFGDGGT-SEGDFHAALNFSAVTEAP---VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIR 233 (380)
Q Consensus 164 ------~~~~vv~~~GDG~~-~eG~~~Eal~~A~~~~Lp---vi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~ 233 (380)
.+.++||++|||++ +||.+||+||+|+.|+|| +||||+||+|+++++.....+..++.+++++|||++++
T Consensus 270 ~~~~~~~~~~vv~~~GDGa~~~eG~v~Ealn~A~~~~lp~g~vi~iv~NN~~g~st~~~~~~s~~~~~~~a~a~G~p~~~ 349 (868)
T 2yic_A 270 EGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGFTTAPTDSRSSEYCTDVAKMIGAPIFH 349 (868)
T ss_dssp TSSSCSCCEEEEEEEEHHHHHHCHHHHHHHTTTTCTTTCCSCCEEEEEECSCBTTBCHHHHCSSSSTTGGGGGGTCCEEE
T ss_pred ccccccCCceEEEEECCcccccccHHHHHHHHHHhcCCCCCCeEEEEEcCCcccccCccccccccCHHHHHHhCCCcEEE
Confidence 56799999999996 899999999999999998 99999999999999876555566788999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChhhHHHHHhcCChHHHHHHHHHHcCCCCHH
Q 016903 234 VDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGD 313 (380)
Q Consensus 234 VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~ 313 (380)
|||+|+++|+.+++.|++++|++++|+|||++|||++|||++|+|. ||.+++++.|++.+||+.+|+++|+++|++|++
T Consensus 350 VdG~D~~av~~a~~~A~~~ar~~~~PvlIe~~tyR~~GHs~~D~p~-~~~p~~~~~~~~~~dPi~~~~~~L~~~G~~t~e 428 (868)
T 2yic_A 350 VNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEGDDPS-MTQPYMYDVIDTKRGSRKAYTEALIGRGDISMK 428 (868)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCSCSSTTCCGG-GTCHHHHHHHTTCCCHHHHHHHHHHHTTSSCHH
T ss_pred EeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeecCCCcCcccccc-cCChHHHHHHHhCCCHHHHHHHHHHHcCCCCHH
Confidence 9999999999999999999999999999999999999999999985 555677778876689999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC-C-CC-CCCccccccccC----CCccHHHHHHHHHHHHHhCCCCCCCCC
Q 016903 314 IESELRSSVRKQILHALQEAEKA-E-KP-PISDLFTDVYDV----SPSNLREQEHSLRETIKKHPQDYPSNV 378 (380)
Q Consensus 314 e~~~i~~~~~~~v~~a~~~a~~~-p-~p-~~~~~~~~vy~~----~~~~~~~~~~~l~~~~~~~p~~~~~~~ 378 (380)
++++|+++++++|++++++|++. | .| +. .++.++|.. .+....+.++.+.+.+...|+.|..+.
T Consensus 429 e~~~i~~e~~~~v~~a~~~a~~~~p~~~~~~-~~~~~~~~~~~~~~t~~~~~~l~~~~~~~~~~p~~~~~~~ 499 (868)
T 2yic_A 429 EAEDALRDYQGQLERVFNEVRELEKHEIEPS-ESVEADQQIPSKLATAVDKAMLQRIGDAHLALPEGFTVHP 499 (868)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC------------------CCCCCCHHHHHHHHHHTTCCCTTCCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCcccc-cccccccccccCCCCccCHHHHHHHHHhhccCCcccccch
Confidence 99999999999999999999873 2 21 22 334455542 123345667777777778899988764
|
| >2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-59 Score=512.45 Aligned_cols=343 Identities=15% Similarity=0.139 Sum_probs=283.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhhHHHHHHHhc------CCCCcEEEc-ccccHHHHHH-
Q 016903 31 VKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAA------IKNDDFVVP-QYREPGVLLW- 102 (380)
Q Consensus 31 ~~~~~e~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~G~Ea~~~~~~~~------l~~~D~v~~-~yR~~~~~l~- 102 (380)
+.+|+++++++|+.|+++|.||+++..++++|+. | +..||||+++|++.+ ++++|++++ +||+|+++|+
T Consensus 358 ~~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~~k~-~--g~~GqEa~~~g~~~~l~~~~~l~~~D~v~gm~hRg~~~~La~ 434 (1113)
T 2xt6_A 358 DKPTVAEQKYILSKLNAAEAFETFLQTKYVGQKR-F--SLEGAETVIPMMDAVIDQCAEHGLDEVVIAMPHRGRLNVLAN 434 (1113)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCGG-G--CCTTCTTHHHHHHHHHHHHHHTTCSEEEEECCSTTHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-c--cCCChHHHHHHHHHHHHHhhhCCCCCEEEeccccchHHHHHH
Confidence 5799999999999999999999999999998874 2 239999999998776 568999998 7999999999
Q ss_pred -cCCCHHHHHHHhhcCCCCC-C-CCCCCccccCCCC------------CCccccCcccccchHHHHHHHHHhhhcC----
Q 016903 103 -RGFSMQEFANQCFGNKADY-G-KGRQMPIHYGSNK------------HNYFTVSSTIATQLPHAVGAAYALKMDR---- 163 (380)
Q Consensus 103 -~G~~~~~~~~e~~g~~~~~-~-~G~~~~~H~~~~~------------~~~~~~~g~lG~~lp~A~G~A~A~k~~~---- 163 (380)
+|++++++|+|++|+.+++ + .|+++++|++... .++.+++|+||+++|+|+|+|+|.|+++
T Consensus 435 ~~G~~~~~i~ae~~G~~~g~~~~g~gdv~~Hlg~~~~~~~~~g~~~v~l~l~~n~s~Lg~~~p~A~G~A~A~k~~~~~~~ 514 (1113)
T 2xt6_A 435 IVGKPYSQIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQMFGDNDIEVSLTANPSHLEAVDPVLEGLVRAKQDLLDTGE 514 (1113)
T ss_dssp TTCCCHHHHSTTC-------------CGGGTCCEEEEEECSSSSCEEEEEECCCCSSTTTTHHHHHHHHHHHHHHTTBST
T ss_pred HhCCCHHHHHHHhcCCCCCCccCCCCCccccCCccccccccCCCcceeeeecCCCccccccccHHHHHHHHHHHhccccC
Confidence 9999999999999999887 4 4566789986432 2456678999999999999999999865
Q ss_pred ------CCCeeEEEeCcccc-CcchHHHHHHHHHHcCCC---EEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEE
Q 016903 164 ------KDACAVTYFGDGGT-SEGDFHAALNFSAVTEAP---VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIR 233 (380)
Q Consensus 164 ------~~~~vv~~~GDG~~-~eG~~~Eal~~A~~~~Lp---vi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~ 233 (380)
.+.+++|++|||++ +||.+||+||+|+.|+|| +||||+||+|++++++....+..++.+++++|||++++
T Consensus 515 ~~~~~~~~~~~v~~~GDGa~~~eG~~~Ealn~A~~~~lp~g~vi~iv~NN~~gist~~~~~~s~~~~~~~a~a~G~p~~~ 594 (1113)
T 2xt6_A 515 EGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGFTTAPTDSRSSEYCTDVAKMIGAPIFH 594 (1113)
T ss_dssp TSSBSCCCEEEEEEEEHHHHHHCTHHHHHHTTTTCTTTCCSCCEEEEEECSCBTTBCHHHHCSSSSTTGGGGGGTCCEEE
T ss_pred ccccccCCcEEEEEECCcccccccHHHHHHHHHhhcCCCCCCeEEEEEeCCcccccCccccccccCHHHHHHhcCCcEEE
Confidence 56899999999996 999999999999999998 99999999999999876555556678999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChhhHHHHHhcCChHHHHHHHHHHcCCCCHH
Q 016903 234 VDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGD 313 (380)
Q Consensus 234 VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~ 313 (380)
|||+|+++|+.+++.|++++|++++|+|||++|||++|||++|+|. ||.+++++.|++.+||+.+|+++|+++|++|++
T Consensus 595 VdG~D~~av~~a~~~A~~~~r~~~~PvlIe~~tyR~~GHs~~D~p~-~~~~~~~~~~~~~~dpi~~~~~~L~~~G~~t~e 673 (1113)
T 2xt6_A 595 VNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEGDDPS-MTQPYMYDVIDTKRGSRKAYTEALIGRGDISMK 673 (1113)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCSCSSTTCCGG-GTCHHHHHHHTTCCCHHHHHHHHHHHHTSSCHH
T ss_pred EcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeEccCCcCCCCccc-cCChHHHHHHHhcCCHHHHHHHHHHHcCCCCHH
Confidence 9999999999999999999999999999999999999999999986 555667777865689999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC-C-CC-CCCccccccccC----CCccHHHHHHHHHHHHHhCCCCCCCCC
Q 016903 314 IESELRSSVRKQILHALQEAEKA-E-KP-PISDLFTDVYDV----SPSNLREQEHSLRETIKKHPQDYPSNV 378 (380)
Q Consensus 314 e~~~i~~~~~~~v~~a~~~a~~~-p-~p-~~~~~~~~vy~~----~~~~~~~~~~~l~~~~~~~p~~~~~~~ 378 (380)
++++|+++++++|++++++|++. | .| +. ..+.++|.+ .+....+.++.+.+.+...|+.|..+.
T Consensus 674 e~~~i~~e~~~~v~~a~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~t~~~~~~l~~~~~~~~~~p~~~~~~~ 744 (1113)
T 2xt6_A 674 EAEDALRDYQGQLERVFNEVRELEKHEIEPS-ESVEADQQIPSKLATAVDKAMLQRIGDAHLALPEGFTVHP 744 (1113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------CCCCCCHHHHHHHHHHTTCCCTTCCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCcccc-cccccccccccCCCCccCHHHHHHHHHhhccCCcccccch
Confidence 99999999999999999999884 2 22 11 334455642 233345677778788888999988764
|
| >2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-57 Score=493.58 Aligned_cols=362 Identities=13% Similarity=0.096 Sum_probs=281.0
Q ss_pred CCeeEEeCCCCC-CCCCC---CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhhHHHHHHHhcC---
Q 016903 12 IPCYRVLDDDGQ-PFPDS---SFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAI--- 84 (380)
Q Consensus 12 ~~~~~~~~~~g~-~~~~~---~~~~~~~e~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~G~Ea~~~~~~~~l--- 84 (380)
.|.++++|.+|+ ++.+. ..+.+++++++++|+.|+++|.||+++..++++|+. .+..|||++++|++.++
T Consensus 170 ~e~~~i~~~~~~~w~~~~~e~~~~~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~gkr---f~~~G~Ea~i~g~~~~~~~a 246 (933)
T 2jgd_A 170 AEYMHITSTEEKRWIQQRIESGRATFNSEEKKRFLSELTAAEGLERYLGAKFPGAKR---FSLEGGDALIPMLKEMIRHA 246 (933)
T ss_dssp EECSSCCCHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC--C---CCCTTCTTHHHHHHHHHHHH
T ss_pred ceeeecCCHHHhHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---ccCCCchHHHHHHHHHHHHH
Confidence 356778888887 44221 146799999999999999999999999999999872 24689999999965554
Q ss_pred ---CCCcEEEc-ccccHHHHHH--cCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCC----------CccccCcccccc
Q 016903 85 ---KNDDFVVP-QYREPGVLLW--RGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKH----------NYFTVSSTIATQ 148 (380)
Q Consensus 85 ---~~~D~v~~-~yR~~~~~l~--~G~~~~~~~~e~~g~~~~~~~G~~~~~H~~~~~~----------~~~~~~g~lG~~ 148 (380)
+++|++++ +||+|+++|+ +|+++.++|+|++|+.++.+.|+++++|++.... ++.+++|++|++
T Consensus 247 ~~~g~~D~v~g~~hRg~~~~Lan~~G~~~~~i~~e~~G~~~g~~g~gdv~~Hlg~~~~~~~~gg~~~l~l~~~~shlg~~ 326 (933)
T 2jgd_A 247 GNSGTREVVLGMAHRGRLNVLVNVLGKKPQDLFDEFAGKHKEHLGTGDVKYHMGFSSDFQTDGGLVHLALAFNPSHLEIV 326 (933)
T ss_dssp HTTTCCEEEEECCSTTHHHHHHHTTCCCHHHHHHHHHTCC--CCSCCCCGGGCCEEEEEEETTEEEEEEECCCCSSTTCH
T ss_pred hhCCCCCEEecCCCcCHHHHHHHHhCCCHHHHHHHhcCCCCCCCCCCCccccCCcccccccCCCceEEeecccCcccccc
Confidence 47999997 7999999999 9999999999999999888777889999875331 235778999999
Q ss_pred hHHHHHHHHHhhhcC-----CCCeeEEEeCcccc-CcchHHHHHHHHHHcCCC---EEEEEEcCCccccc-ccccccCCc
Q 016903 149 LPHAVGAAYALKMDR-----KDACAVTYFGDGGT-SEGDFHAALNFSAVTEAP---VIFICRNNGWAIST-PISDQFRSD 218 (380)
Q Consensus 149 lp~A~G~A~A~k~~~-----~~~~vv~~~GDG~~-~eG~~~Eal~~A~~~~Lp---vi~vv~NN~~~~~~-~~~~~~~~~ 218 (380)
+|+|+|+|+|.++++ .+.++||++|||++ ++|.+||+||+|+.+++| +||||+||+|++++ +...+.+..
T Consensus 327 ~p~A~G~A~A~~~~~~~~~~~~~~vv~v~GDGa~a~qG~~~Ealn~A~~~~lp~gg~I~vv~nN~~~ist~~~~~~~~~~ 406 (933)
T 2jgd_A 327 SPVVIGSVRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQVGFTTSNPLDARSTP 406 (933)
T ss_dssp HHHHHHHHHHHHTTSSSCCGGGEEEEEEEEHHHHHHCTHHHHHHHHTTSTTTCCSCCEEEEEECC---------------
T ss_pred cCHHHHHHHHHHhhccccCCCCeEEEEEECCcccccCCHHHHHHHHhhccCCCCCceEEEEEeCCccccCCCHHhcccch
Confidence 999999999999884 67899999999998 999999999999999999 99999999999999 888777677
Q ss_pred CHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChhhHHHHHhcCChHH
Q 016903 219 GAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVT 298 (380)
Q Consensus 219 ~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~ 298 (380)
++++++++|||++++|||+|+++|+.+++.|++++|.+++|+|||+.|||++||+++|+| .||+++|++.|++.+||+.
T Consensus 407 ~~~~~a~a~g~p~~~VdG~D~~av~~a~~~A~e~~r~~~~P~lIe~~tyR~~GH~~~D~~-~yr~~~e~~~~~~~~dPi~ 485 (933)
T 2jgd_A 407 YCTDIGKMVQAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRRHGHNEADEP-SATQPLMYQKIKKHPTPRK 485 (933)
T ss_dssp CGGGGGGTTTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC------------CCTTHHHHHTSCCHHH
T ss_pred hHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEeeeeecCcCcccch-hhCCHHHHHHHHccCCHHH
Confidence 899999999999999999999999999999999999999999999999999999999986 5999999999985579999
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCCcccccccc------CCCccHHHHHHHHHHHHHhCC
Q 016903 299 RFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKA-EKPPISDLFTDVYD------VSPSNLREQEHSLRETIKKHP 371 (380)
Q Consensus 299 ~~~~~L~~~g~~t~~e~~~i~~~~~~~v~~a~~~a~~~-p~p~~~~~~~~vy~------~~~~~~~~~~~~l~~~~~~~p 371 (380)
+|+++|+++|++|++++++++++++++|+++++.|++. |.|.....+..+.. ..+....+.++.+.+.+...|
T Consensus 486 ~~~~~Li~~Gv~t~~~~~~i~~~~~~~v~~a~~~A~~~~p~~~~~~~~~~~~~~~~~~~~~tg~~~~~l~~i~~~~~~~p 565 (933)
T 2jgd_A 486 IYADKLEQEKVATLEDATEMVNLYRDALDAGDCVVAEWRPMNMHSFTWSPYLNHEWDEEYPNKVEMKRLQELAKRISTVP 565 (933)
T ss_dssp HHHHHHHTTTSSCHHHHHHHHHHHHHHHHHTSCCCTTEECCCGGGCTTGGGSSCCTTCCCCCCCCHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhcccccccccccCCCCCCCHHHHHHHHhhhcCCC
Confidence 99999999999999999999999999999999998873 32211123332211 112233345556666666678
Q ss_pred CCCCCC
Q 016903 372 QDYPSN 377 (380)
Q Consensus 372 ~~~~~~ 377 (380)
+.|.++
T Consensus 566 ~~~~~~ 571 (933)
T 2jgd_A 566 EAVEMQ 571 (933)
T ss_dssp TTSCCC
T ss_pred CCCccc
Confidence 887654
|
| >2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-33 Score=291.96 Aligned_cols=240 Identities=15% Similarity=0.142 Sum_probs=182.5
Q ss_pred CeeEEeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhhHHHHHHHhcCC-CCcEEE
Q 016903 13 PCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-NDDFVV 91 (380)
Q Consensus 13 ~~~~~~~~~g~~~~~~~~~~~~~e~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~G~Ea~~~~~~~~l~-~~D~v~ 91 (380)
|.+.+|+ ++-.|.|.++++.++|.++++.| |.+...+.. + ..+++++++|++.+.+++..+++ +.|+++
T Consensus 6 ~~~~~l~---~i~~p~d~~~l~~~~l~~l~~~i---R~~~~~~~~--~--~~Gh~~~~lg~~~~~~~l~~~~~~~~D~~v 75 (621)
T 2o1s_A 6 AKYPTLA---LVDSTQELRLLPKESLPKLCDEL---RRYLLDSVS--R--SSGHFASGLGTVELTVALHYVYNTPFDQLI 75 (621)
T ss_dssp TTSTTGG---GCSSHHHHTTSCGGGHHHHHHHH---HHHHHHHSC--G--GGCTHHHHHTTHHHHHHHHHHSCTTTSEEE
T ss_pred CCCchhh---hcCChHHhhhCCHHHHHHHHHHH---HHHHHHHHh--h--cCCCcCCChhHHHHHHHHHhccCCCCCEEE
Confidence 4445565 33345567789999999999999 655433321 2 23688899999999999999999 899999
Q ss_pred --cccccHHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCC-CCccccCcccccchHHHHHHHHHhhhcCCCCee
Q 016903 92 --PQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HNYFTVSSTIATQLPHAVGAAYALKMDRKDACA 168 (380)
Q Consensus 92 --~~yR~~~~~l~~G~~~~~~~~e~~g~~~~~~~G~~~~~H~~~~~-~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~v 168 (380)
..||++++.+.+|. . +-+..++.. | +.++|+.... ++....+|++|+++|+|+|+|+|.|+++++++|
T Consensus 76 ~~~gH~~y~~~~l~G~-~-~~~~~~r~~------~-g~~g~~~~~~s~~~~~~~G~~G~gl~~A~G~AlA~~~~~~~~~V 146 (621)
T 2o1s_A 76 WDVGHQAYPHKILTGR-R-DKIGTIRQK------G-GLHPFPWRGESEYDVLSVGHSSTSISAGIGIAVAAEKEGKNRRT 146 (621)
T ss_dssp ESSSTTCHHHHHTTTT-G-GGGGGTTST------T-SCCSSCCTTTCTTCCSCCSSSSCHHHHHHHHHHHHHHHTSCCCE
T ss_pred EeCchHHHHHHHHhCC-H-hhhhccccc------C-CCCCCCCCCCCCCCccCCcccchHHHHHHHHHHHHHHhCCCCeE
Confidence 67999999999998 2 223333321 2 2345554322 345567999999999999999999999999999
Q ss_pred EEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCC-------------------------------
Q 016903 169 VTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRS------------------------------- 217 (380)
Q Consensus 169 v~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~------------------------------- 217 (380)
||++|||++++|++||+||+|+++++|+||||+||+|++++++..+...
T Consensus 147 v~v~GDG~~~~G~~~EaL~~A~~~~~pli~vvnnN~~~i~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~p~~~~~~ 226 (621)
T 2o1s_A 147 VCVIGDGAITAGMAFEAMNHAGDIRPDMLVILNDNEMSISENVGALNNHLAQLLSGKLYSSLREGGKKVFSGVPPIKELL 226 (621)
T ss_dssp EEEEETTGGGSHHHHHHHHHHHHHCCSEEEEEEECC--------------------------------------------
T ss_pred EEEEchhhhhccHHHHHHHHHHhhCCCEEEEEeCCCcccCCCcchHHHHHHhhhcchhHHHHHHHHHHHHhccchHHHHH
Confidence 9999999999999999999999999999999999999998876532110
Q ss_pred ---cCH-------HHHHhhcCceEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCC
Q 016903 218 ---DGA-------VVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS 275 (380)
Q Consensus 218 ---~~~-------~~~a~a~G~~~~-~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~ 275 (380)
.++ ..++++|||+++ +|||||+.++.+++++|.+ .++|+||+++|+|.+||+..
T Consensus 227 ~r~~~~~~~~~~p~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~~----~~gP~lI~v~t~kg~G~~~~ 291 (621)
T 2o1s_A 227 KRTEEHIKGMVVPGTLFEELGFNYIGPVDGHDVLGLITTLKNMRD----LKGPQFLHIMTKKGRGYEPA 291 (621)
T ss_dssp ------------CHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHH----SCSEEEEEEECCCTTCCCCC
T ss_pred HHHHHHhhhccChhhHHHHCCCeEeeeeCCCCHHHHHHHHHHHHH----cCCCEEEEEEEecccCCChh
Confidence 011 478999999999 9999999999999998875 47999999999999999854
|
| >1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-30 Score=274.55 Aligned_cols=200 Identities=21% Similarity=0.186 Sum_probs=167.4
Q ss_pred CcEEEc--cccc---HHHHHHcCC-CHHHHHHHhhcCCCCCCCCCCCccccCCCCCCccccCcccccchHHHHHHHHHhh
Q 016903 87 DDFVVP--QYRE---PGVLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALK 160 (380)
Q Consensus 87 ~D~v~~--~yR~---~~~~l~~G~-~~~~~~~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k 160 (380)
.|.++. .|-+ +++++..|+ ...+-|..++. .|+.+++|+....+++...+|++|+++|.|+|+|+|.+
T Consensus 60 rDr~v~s~GH~~~~lYa~~~l~G~~~~~~~l~~~r~------~g~~~~ghp~~~~~g~~~~~G~lG~gl~~AvG~AlA~~ 133 (680)
T 1gpu_A 60 RDRFVLSNGHAVALLYSMLHLTGYDLSIEDLKQFRQ------LGSRTPGHPEFELPGVEVTTGPLGQGISNAVGMAMAQA 133 (680)
T ss_dssp CCEEEESSGGGHHHHHHHHHHTTCSCCHHHHTTTTC------TTCSCCSSCCTTSTTCCSCCCSTTHHHHHHHHHHHHHH
T ss_pred CCEEEEecchHHHHHHHHHHHhCCCCCHHHHHhhcc------cCCCCCCCCCccCCCeeeccccccchHHHHHHHHHHHH
Confidence 466554 4666 556667787 33444555554 25566889877667889999999999999999999998
Q ss_pred hcC----------CCCeeEEEeCccccCcchHHHHHHHHHHcCCC-EEEEEEcCCcccccccccccCCcCHHHHHhhcCc
Q 016903 161 MDR----------KDACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 161 ~~~----------~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
+.+ .+++|||++|||++++|++||+|++|++++|| +|+||+||+|++++++.... ..++.+++++|||
T Consensus 134 ~~~~~~n~~~~~~~~~~vv~i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~-~~d~~~~~~a~G~ 212 (680)
T 1gpu_A 134 NLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDNKITIDGATSISF-DEDVAKRYEAYGW 212 (680)
T ss_dssp HHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHHHTC
T ss_pred HhccccccCccCCCCCeEEEEECCCccchhhHHHHHHHHHHhCCCcEEEEEECCCceEeccccccc-CccHHHHHHhcCC
Confidence 764 37899999999999999999999999999996 99999999999999877554 5789999999999
Q ss_pred eEE-EEeCC-CHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCC---CCCCChhhHHHHHhcCChH
Q 016903 230 RSI-RVDGN-DALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDS---TKYRPVDEIEWWRTTQDPV 297 (380)
Q Consensus 230 ~~~-~VdG~-D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~---~~Yr~~~e~~~~~~~~DPi 297 (380)
+++ +|||| |+.++++++++|.+ ..++|+||+++|+|.+||+..|++ ..||+++|++.|++ .+++
T Consensus 213 ~~~~~vdG~~d~~~l~~al~~A~~---~~~~P~lI~~~T~kg~G~~~~~~~~~H~~~~~~ee~~~~~~-~~~~ 281 (680)
T 1gpu_A 213 EVLYVENGNEDLAGIAKAIAQAKL---SKDKPTLIKMTTTIGYGSLHAGSHSVHGAPLKADDVKQLKS-KFGF 281 (680)
T ss_dssp EEEEESCTTTCHHHHHHHHHHHHH---CTTSCEEEEEECCTTTTSTTTTSGGGSSSCCCHHHHHHHHH-HTTC
T ss_pred eEEEEecCCCCHHHHHHHHHHHHH---CCCCCEEEEEEeecccccccCCCCccCCCCCCHHHHHHHHH-HcCC
Confidence 999 99999 99999999999875 257999999999999999977653 67999999999973 5544
|
| >1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=6.2e-30 Score=271.06 Aligned_cols=195 Identities=21% Similarity=0.172 Sum_probs=162.8
Q ss_pred cEEE-c-cccc---HHHHHHcCC-CHHHHHHHhhcCCCCCCCCCCCccccCCC-CCCccccCcccccchHHHHHHHHHhh
Q 016903 88 DFVV-P-QYRE---PGVLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYALK 160 (380)
Q Consensus 88 D~v~-~-~yR~---~~~~l~~G~-~~~~~~~e~~g~~~~~~~G~~~~~H~~~~-~~~~~~~~g~lG~~lp~A~G~A~A~k 160 (380)
|.++ + .|-. ++++...|+ ...+-+..++. .|+.+++|+... .+++..++|+||+++|.|+|+|+|.+
T Consensus 60 Drfvls~GH~~~~lYa~l~l~G~~~~~~~l~~~r~------~~s~~~ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~~ 133 (673)
T 1r9j_A 60 DRFVMSNGHGCALQYALLHMAGYNLTMDDLKGFRQ------DGSRTPGHPERFVTPGVEVTTGPLGQGIANAVGLAIAEA 133 (673)
T ss_dssp CEEEESSGGGHHHHHHHHHHHTCSCCHHHHHTTTS------TTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHH
T ss_pred CeEEEccccHHHHHHHHHHHcCCCCCHHHHHhhcc------CCCCCCCCCCCCCCCCeeeccCCCCCcHHHHHHHHHHHH
Confidence 5554 4 4665 355566787 44555666664 367778898754 46888899999999999999999998
Q ss_pred hcC----------CCCeeEEEeCccccCcchHHHHHHHHHHcCCC-EEEEEEcCCcccccccccccCCcCHHHHHhhcCc
Q 016903 161 MDR----------KDACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 161 ~~~----------~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
+.+ .+++|+|++|||+++||++||++++|++++|| +|+||+||+|++++++.... ..++.+++++|||
T Consensus 134 ~~~~~~n~~g~~~~d~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~d~N~~~i~~~~~~~~-~~d~~~~~~a~G~ 212 (673)
T 1r9j_A 134 HLAATFNRPGYNIVDHYTYVYCGDGCLMEGVCQEALSLAGHLALEKLIVIYDSNYISIDGSTSLSF-TEQCHQKYVAMGF 212 (673)
T ss_dssp HHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECSBCSSSBGGGTC-CCCHHHHHHHTTC
T ss_pred HhhhhccccccCCCCCEEEEEECcchhcccHHHHHHHHHHHhCCCcEEEEEECCCCccccchhhcc-CHhHHHHHHHCCC
Confidence 764 58899999999999999999999999999995 99999999999999888776 6789999999999
Q ss_pred eEE-EEeC-CCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCC---CCCCCChhhHHHHHh
Q 016903 230 RSI-RVDG-NDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDD---STKYRPVDEIEWWRT 292 (380)
Q Consensus 230 ~~~-~VdG-~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~Dd---~~~Yr~~~e~~~~~~ 292 (380)
+++ .||| ||+.++++++++|.+ ..++|+||+++|+|.+||+..|. +..+++++|++.|++
T Consensus 213 ~~~~~vdG~~d~~~l~~Al~~A~~---~~~~P~lI~~~T~kg~G~~~~~~~~~H~~~~~~ee~~~~~~ 277 (673)
T 1r9j_A 213 HVIEVKNGDTDYEGLRKALAEAKA---TKGKPKMIVQTTTIGFGSSKQGTEKVHGAPLGEEDIANIKA 277 (673)
T ss_dssp EEEEESCTTTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTSTTTTSGGGTSSCCCHHHHHHHHH
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHH---cCCCCEEEEEecccccccccCCCcccccCCCCHHHHHHHHH
Confidence 999 8999 999999999998875 26799999999999999985443 234678888888863
|
| >3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.4e-30 Score=271.82 Aligned_cols=181 Identities=22% Similarity=0.175 Sum_probs=153.7
Q ss_pred CcEEEc--cccc---HHHHHHcCC-CHHHHHHHhhcCCCCCCCCCCCccccCC-CCCCccccCcccccchHHHHHHHHHh
Q 016903 87 DDFVVP--QYRE---PGVLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYAL 159 (380)
Q Consensus 87 ~D~v~~--~yR~---~~~~l~~G~-~~~~~~~e~~g~~~~~~~G~~~~~H~~~-~~~~~~~~~g~lG~~lp~A~G~A~A~ 159 (380)
.|.++. .|-+ ++++...|+ ...+-+..|+. .|+.+++|+.. ..+++..++|++|+++|+|+|+|+|.
T Consensus 76 rDrfvls~GH~s~~lYa~l~l~G~~~~~~~l~~fr~------~gs~~~ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~ 149 (700)
T 3rim_A 76 RDRFVLSAGHSSLTLYIQLYLGGFGLELSDIESLRT------WGSKTPGHPEFRHTPGVEITTGPLGQGLASAVGMAMAS 149 (700)
T ss_dssp CCEEEESSTTCHHHHHHHHHHTTSSCCHHHHTTTTS------TTCSCCSSCCBTTBTTCCSCCCSTTHHHHHHHHHHHHH
T ss_pred CCeEEECCCchhHHHHHHHHHhCCCCCHHHHHHhhc------CCCCCCCCCCCCCCCCccccccccCCcchHHHHHHHHH
Confidence 577664 4666 356666786 44444666654 36778899875 35788889999999999999999999
Q ss_pred hhc-------------CCCCeeEEEeCccccCcchHHHHHHHHHHcCCC-EEEEEEcCCcccccccccccCCcCHHHHHh
Q 016903 160 KMD-------------RKDACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGR 225 (380)
Q Consensus 160 k~~-------------~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi~vv~NN~~~~~~~~~~~~~~~~~~~~a~ 225 (380)
|+. +.+++|+|++|||++++|.+|||+++|++|+|| +|+||+||+|++++++.... ..++.++++
T Consensus 150 k~~~~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~si~~~~~~~~-~~~~~~~~~ 228 (700)
T 3rim_A 150 RYERGLFDPDAEPGASPFDHYIYVIASDGDIEEGVTSEASSLAAVQQLGNLIVFYDRNQISIEDDTNIAL-CEDTAARYR 228 (700)
T ss_dssp HHHHHHHCTTSCTTCSTTCCCEEEEEEHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHH
T ss_pred HHHhhhccccccccccCCCCeEEEEECCcccccChHHHHHHHHHHcCCCcEEEEEECCCcccccchhhcc-chhHHHHHH
Confidence 974 467899999999999999999999999999995 99999999999999987654 678999999
Q ss_pred hcCceEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCC
Q 016903 226 AYGVRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDD 277 (380)
Q Consensus 226 a~G~~~~~V-dG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~Dd 277 (380)
+|||++++| ||||+.++++++++|.+ ..++|+||+|+|+|.+||+...+
T Consensus 229 a~G~~~~~V~DG~D~~al~~Al~~A~~---~~~~P~lI~~~T~kG~G~~~~e~ 278 (700)
T 3rim_A 229 AYGWHVQEVEGGENVVGIEEAIANAQA---VTDRPSFIALRTVIGYPAPNLMD 278 (700)
T ss_dssp HHTCEEEEEECTTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTCTTTTT
T ss_pred HcCCeEEEECCCCCHHHHHHHHHHHHH---cCCCCEEEEEEEEeeecCCccCC
Confidence 999999999 99999999999998865 26899999999999999987653
|
| >2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.1e-31 Score=278.06 Aligned_cols=198 Identities=22% Similarity=0.182 Sum_probs=164.7
Q ss_pred cEEEc--cccc---HHHHHHcCC-CHHHHHHHhhcCCCCCCCCCCCccccCCC-CCCccccCcccccchHHHHHHHHHhh
Q 016903 88 DFVVP--QYRE---PGVLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYALK 160 (380)
Q Consensus 88 D~v~~--~yR~---~~~~l~~G~-~~~~~~~e~~g~~~~~~~G~~~~~H~~~~-~~~~~~~~g~lG~~lp~A~G~A~A~k 160 (380)
|.++. .|-+ .++++..|+ ...+-|..++. .|+..++|+... .+++...+|+||+++|.|+|+|+|.+
T Consensus 62 Dr~vls~GH~~~~lYa~l~l~G~~~~~~~l~~~r~------~~~~~~ghp~~~~~~g~~~~~G~lG~gl~~AvG~A~A~~ 135 (651)
T 2e6k_A 62 DRFVLSAGHGSMLLYAVLHLTGYDLPLEELKSFRQ------WGSKTPGHPERGHTPGVEVTTGPLGQGISTAVGLALAER 135 (651)
T ss_dssp CEEEESSGGGHHHHHHHHHHTTCSCCHHHHTTTTS------TTCSCCSSCCBTTBTTCCSCCCSTTHHHHHHHHHHHHHH
T ss_pred CeEEEeCcchhHHHHHHHHHhCCCCCHHHHHHhhc------cCCCCCCCCCCCCCCCeeeccccccchHHHHHHHHHHHH
Confidence 66553 4666 566667887 44444555554 245557787643 46888899999999999999999998
Q ss_pred hcC----------CCCeeEEEeCccccCcchHHHHHHHHHHcCCC-EEEEEEcCCcccccccccccCCcCHHHHHhhcCc
Q 016903 161 MDR----------KDACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 161 ~~~----------~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
+.+ .+++|||++|||++++|++||+|++|++++|| +|+||+||+|++++++.... ..++.+++++|||
T Consensus 136 ~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~-~~d~~~~~~a~G~ 214 (651)
T 2e6k_A 136 KLAAEFNRPGHVVVDHYTYVLASDGDLMEGVSGEAASLAGHWGLSKLIVFWDDNRISIDGPTDLAF-TEDVLARYRAYGW 214 (651)
T ss_dssp HHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECCEETTEEGGGTC-CSCHHHHHHHTTC
T ss_pred hhcccccccccCCCCCEEEEEEChhhhchhHHHHHHHHHHHcCCCeEEEEEECCCccccccccccc-CccHHHHHHhCCC
Confidence 765 68899999999999999999999999999996 99999999999999887765 6789999999999
Q ss_pred eEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCC----CChhhHHHHHhcCChHH
Q 016903 230 RSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKY----RPVDEIEWWRTTQDPVT 298 (380)
Q Consensus 230 ~~~-~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Y----r~~~e~~~~~~~~DPi~ 298 (380)
+++ +|||||+.++++++++|.+ .++|+||+++|+|.+||+ .+++..| ++++|++.|+ +++|+.
T Consensus 215 ~~~~~vdG~d~~~l~~al~~a~~----~~~P~lI~~~t~kg~G~~-~~~~~~~H~~~~~~~e~~~~~-~~~~~~ 282 (651)
T 2e6k_A 215 QTLRVEDVNDLEALRKAIKLAKL----DERPTLIAVRSHIGFGSP-KQDSAKAHGEPLGPEAVEATR-RNLGWP 282 (651)
T ss_dssp EEEEESCTTCHHHHHHHHHHHHH----SSSCEEEEEECCTTTTST-TTTSGGGTSSCCHHHHHHHHH-HHHTCC
T ss_pred eEEEEeCCCCHHHHHHHHHHHHH----CCCCEEEEEEeEeccccc-ccccccccccCCCHHHHHHHH-HHcCCC
Confidence 999 9999999999999998875 579999999999999999 5555556 5788999997 467764
|
| >3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-29 Score=265.50 Aligned_cols=233 Identities=20% Similarity=0.163 Sum_probs=172.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchh-hHHHHHHHhcCC---------CCcEEEc--cccc---
Q 016903 32 KVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGE-EAINIASAAAIK---------NDDFVVP--QYRE--- 96 (380)
Q Consensus 32 ~~~~e~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~G~-Ea~~~~~~~~l~---------~~D~v~~--~yR~--- 96 (380)
++++....++=+....+|.+=-.+......|.++. ++|- |...+.....|+ +.|.++. .|-+
T Consensus 4 ~~~~~~~~~l~~~a~~iR~~~i~~~~~~~~GH~g~---~l~~~e~~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~~~~l 80 (616)
T 3mos_A 4 KPDQQKLQALKDTANRLRISSIQATTAAGSGHPTS---CCSAAEIMAVLFFHTMRYKSQDPRNPHNDRFVLSKGHAAPIL 80 (616)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHH---HHTTHHHHHHHHHTTCBCCTTCTTCTTSCEEEESSGGGHHHH
T ss_pred cccccCHHHHHHHHHHHHHHHHHHHHhcCCCcCCc---chhHHHHHHHHHHHhhccCCCCCCCCCCCeEEEcCccHHHHH
Confidence 34555555554445555655333333333455432 2332 333322223342 2577665 3655
Q ss_pred HHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCccccCcccccchHHHHHHHHHhhhcCC-CCeeEEEeCcc
Q 016903 97 PGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRK-DACAVTYFGDG 175 (380)
Q Consensus 97 ~~~~l~~G~~~~~~~~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~-~~~vv~~~GDG 175 (380)
.+++...|+...+-|..++. .|+++++|+....+++..++|++|+++|+|+|+|+|.++.+. +++|||++|||
T Consensus 81 y~~~~l~G~~~~~~l~~~r~------~~s~l~ghp~~~~~~~d~~~G~lG~gl~~A~G~AlA~~~~~~~~~~vv~v~GDG 154 (616)
T 3mos_A 81 YAVWAEAGFLAEAELLNLRK------ISSDLDGHPVPKQAFTDVATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDG 154 (616)
T ss_dssp HHHHHHTTSSCGGGGGGTTC------TTCSCCSSCCTTSTTCSSCCCSTTCHHHHHHHHHHHHHHTSCCSCCEEEEEETG
T ss_pred HHHHHHcCCCCHHHHHHhcc------CCCCCCCCCCCCCCcccccccccCCccHHHHHHHHHHHHhCCCCCEEEEEECcc
Confidence 23556678644444555554 377889998866677777899999999999999999986555 58999999999
Q ss_pred ccCcchHHHHHHHHHHcCCC-EEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhh
Q 016903 176 GTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAI 254 (380)
Q Consensus 176 ~~~eG~~~Eal~~A~~~~Lp-vi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar 254 (380)
++++|++||+|++|++++|| +|+|++||+|++++++.......++.+++++|||++++|||||++++.++++++
T Consensus 155 ~~~eG~~~Eal~~A~~~~l~~livi~nnN~~~i~~~~~~~~~~~~~~~~~~a~G~~~~~VdG~d~~~l~~al~~~----- 229 (616)
T 3mos_A 155 ELSEGSVWEAMAFASIYKLDNLVAILDINRLGQSDPAPLQHQMDIYQKRCEAFGWHAIIVDGHSVEELCKAFGQA----- 229 (616)
T ss_dssp GGGSHHHHHHHHHHHHTTCTTEEEEEEECSBCSSSBCTTTTCHHHHHHHHHHTTCEEEEEETTCHHHHHHHHHSC-----
T ss_pred ccccCcHHHHHHHHHHcCCCcEEEEEECCCCCCcCCcccccChHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHhc-----
Confidence 99999999999999999995 889999999999998877766678999999999999999999999999988543
Q ss_pred ccCCcEEEEEEeecCCCCCCCCCCC
Q 016903 255 GEGRPILIEALTYRVGHHTTSDDST 279 (380)
Q Consensus 255 ~~~gP~lIe~~t~R~~gHs~~Dd~~ 279 (380)
.++|+||+++|+|.+||+..+++.
T Consensus 230 -~~~P~lI~v~T~kg~G~~~~e~~~ 253 (616)
T 3mos_A 230 -KHQPTAIIAKTFKGRGITGVEDKE 253 (616)
T ss_dssp -CSSCEEEEEECCTTTTSTTTTTCS
T ss_pred -CCCCEEEEEEEecccccccccCch
Confidence 479999999999999998876654
|
| >2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.97 E-value=6e-31 Score=277.34 Aligned_cols=226 Identities=15% Similarity=0.118 Sum_probs=174.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhhHHHHHHHhcCC-CCcEEEcccccHH---HHHH
Q 016903 27 DSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-NDDFVVPQYREPG---VLLW 102 (380)
Q Consensus 27 ~~~~~~~~~e~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~G~Ea~~~~~~~~l~-~~D~v~~~yR~~~---~~l~ 102 (380)
+.+.+.++.++|.++|+.| |.+...+. .+ ..+++++++|+-.+..++-..++ +.|+++.. |||+ +.+.
T Consensus 19 p~d~~~l~~~~l~~l~~~i---R~~~~~~~---~~-~~Gh~~~~lg~v~l~~aL~~~~~~~~D~~v~~-~GH~~y~~~~l 90 (629)
T 2o1x_A 19 PKDLKRLSREQLPALTEEL---RGEIVRVC---SR-GGLHLASSLGAVDIITALHYVLDSPRDRILFD-VGHQAYAHKIL 90 (629)
T ss_dssp HHHHTTSCGGGHHHHHHHH---HHHHHHHH---TT-SSSCHHHHHHTHHHHHHHHHHSCTTTSEEEES-SSTTCHHHHHT
T ss_pred hhhhhhCCHHHHHHHHHHH---HHHHHHHH---Hh-cCCcCCCchhHHHHHHHHHhhcCCCCCeEEec-CchHHHHHHHH
Confidence 4456789999999999999 54432222 22 23688899999666666656668 89999998 8885 6777
Q ss_pred cCC-CHHHHHHHhhcCCCCCCCCCCCccccCCC-CCCccccCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcc
Q 016903 103 RGF-SMQEFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180 (380)
Q Consensus 103 ~G~-~~~~~~~e~~g~~~~~~~G~~~~~H~~~~-~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG 180 (380)
.|. +....+.++.| .++|+... .++....+|++|+++|+|+|+|+|.|+++++++|||++|||++++|
T Consensus 91 ~G~~~~~~~~r~~~g----------~~G~p~~~~s~~~~~~~G~~G~gl~~AvG~AlA~k~~~~~~~Vv~v~GDG~~~~G 160 (629)
T 2o1x_A 91 TGRRDQMADIKKEGG----------ISGFTKVSESEHDAITVGHASTSLTNALGMALARDAQGKDFHVAAVIGDGSLTGG 160 (629)
T ss_dssp TTTGGGGGGTTSTTS----------CCSSCCGGGCTTCCSCCSSSSCHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSH
T ss_pred hCcHhHHhCcccCCC----------CCCCCCCCCCCCCCcCCCcccccHhHHHHHHHHHHHhCCCCeEEEEEchhhhhcc
Confidence 786 22222333333 22333211 2355677899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHcCCCEEEEEEcCCcccccccccccC--------------------------C---------cC-H----
Q 016903 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR--------------------------S---------DG-A---- 220 (380)
Q Consensus 181 ~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~--------------------------~---------~~-~---- 220 (380)
++||+||+|+++++|+||||+||+|++++++..+.. . .+ +
T Consensus 161 ~~~EaL~~A~~~~~pli~IvnnN~~~i~~~~~~~~~~~~~l~~~~~y~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~~~ 240 (629)
T 2o1x_A 161 MALAALNTIGDMGRKMLIVLNDNEMSISENVGAMNKFMRGLQVQKWFQEGEGAGKKAVEAVSKPLADFMSRAKNSTRHFF 240 (629)
T ss_dssp HHHHHHHHHHHHCCSEEEEEEECSBSSSBCCSSHHHHC------------------------------------------
T ss_pred HHHHHHHHHHhhCCCEEEEEECCCCCCCCChhHHHHHHHHHhhchhHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999876642100 0 03 2
Q ss_pred --H--HHHhhcCceEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCC
Q 016903 221 --V--VKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT 274 (380)
Q Consensus 221 --~--~~a~a~G~~~~-~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~ 274 (380)
. .++++|||+++ +|||||+.++.+++++|.+ .++|+||+++|++.+||+.
T Consensus 241 ~p~~~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~~----~~~P~lI~v~t~kg~G~~~ 295 (629)
T 2o1x_A 241 DPASVNPFAAMGVRYVGPVDGHNVQELVWLLERLVD----LDGPTILHIVTTKGKGLSY 295 (629)
T ss_dssp ---CCCTTGGGTCEEEEEEESSCHHHHHHHHHHHTT----SSSEEEEEEECCTTTTCHH
T ss_pred CcccchHHHhcCCeEEeeECCcCHHHHHHHHHHHHh----cCCCEEEEEEEecCCCCCh
Confidence 3 78999999999 9999999999999888753 5799999999999999873
|
| >1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-28 Score=261.83 Aligned_cols=246 Identities=20% Similarity=0.140 Sum_probs=182.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhhHHHHHHH---hcCC-------CCcEEE-c-cccc-
Q 016903 30 FVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASA---AAIK-------NDDFVV-P-QYRE- 96 (380)
Q Consensus 30 ~~~~~~e~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~G~Ea~~~~~~---~~l~-------~~D~v~-~-~yR~- 96 (380)
-+.++.++|.++ ...+|.+--.+......|.++ +++|.--+.+++- ..++ +.|.++ + .|-+
T Consensus 8 ~~~l~~~~l~~~---a~~iR~~~~~~v~~a~~GH~g---~~l~~~~i~~~L~~~~~~~~p~~p~~~~rDr~vls~GH~~~ 81 (675)
T 1itz_A 8 GKAATGELLEKS---VNTIRFLAIDAVEKANSGHPG---LPMGCAPMGHVLYDEVMRYNPKNPYWFNRDRFVLSAGHGCM 81 (675)
T ss_dssp --CCCHHHHHHH---HHHHHHHHHHHHHHHTCSCCH---HHHHHHHHHHHHHHHTCCCCTTCTTCTTCCEEEESSGGGHH
T ss_pred cCCCCHHHHHHH---HHHHHHHHHHHHHHcCCCccC---ccHhHHHHHHHHHHHHhcCCcCCCCCCCCCeEEEcCcchHH
Confidence 357888888754 334455433333333455543 3344333333333 1233 236555 3 4666
Q ss_pred --HHHHHHcCC--CHHHHHHHhhcCCCCCCCCCCCccccCCC-CCCccccCcccccchHHHHHHHHHhhhcC--------
Q 016903 97 --PGVLLWRGF--SMQEFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYALKMDR-------- 163 (380)
Q Consensus 97 --~~~~l~~G~--~~~~~~~e~~g~~~~~~~G~~~~~H~~~~-~~~~~~~~g~lG~~lp~A~G~A~A~k~~~-------- 163 (380)
+++++..|+ ...+-|..++. .|+..++|+... .+++...+|+||+++|.|+|+|+|.++.+
T Consensus 82 ~lYa~l~l~G~~~~~~~~l~~~r~------~~~~~~ghp~~~~~~~~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~ 155 (675)
T 1itz_A 82 LQYALLHLAGYDSVKEEDLKQFRQ------WGSRTPGHPENFETPGVEVTTGPLGQGIANAVGLALAEKHLAARFNKPDS 155 (675)
T ss_dssp HHHHHHHHHTCTTCCHHHHTTTTS------TTCSSCSSCCTTTCTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTB
T ss_pred HHHHHHHHcCCCCCCHHHHHhccc------CCCCCCCCCCCCCCCCeeECCccHHhHHHHHHHHHHHhhhhccccccccc
Confidence 556667787 34344555554 255567888753 46888899999999999999999998765
Q ss_pred --CCCeeEEEeCccccCcchHHHHHHHHHHcCC-CEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEE-EEeCC-C
Q 016903 164 --KDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSI-RVDGN-D 238 (380)
Q Consensus 164 --~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~-~VdG~-D 238 (380)
++++|||++|||++++|++||+|++|++++| |+|+||+||+|++++++.... ..++.+++++|||+++ .|||| |
T Consensus 156 ~~~~~~v~~i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~~d 234 (675)
T 1itz_A 156 EIVDHYTYVILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNHISIDGDTEIAF-TEDVSTRFEALGWHTIWVKNGNTG 234 (675)
T ss_dssp CCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CSCHHHHHHHTTCEEEEESCTTTC
T ss_pred CCCCCEEEEEECHhHhchhHHHHHHHHHHHhCCCcEEEEEECCCccCCCChhhhc-ChhHHHHHHhCCCEEEEEecCCCC
Confidence 7889999999999999999999999999999 799999999999998887755 6789999999999999 89999 9
Q ss_pred HHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCC----CCCChhhHHHHH
Q 016903 239 ALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDST----KYRPVDEIEWWR 291 (380)
Q Consensus 239 ~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~----~Yr~~~e~~~~~ 291 (380)
+.++++++++|.+. .++|+||+++|+|.+||+..+++. .+.+++|++.++
T Consensus 235 ~~~l~~al~~a~~~---~~~P~lI~~~T~kg~G~~~~~~~~~~H~~~~~~e~~~~~~ 288 (675)
T 1itz_A 235 YDDIRAAIKEAKAV---TDKPTLIKVTTTIGFGSPNKANSYSVHGSALGAKEVEATR 288 (675)
T ss_dssp HHHHHHHHHHHHHC---CSSCEEEEEECCTTTTCTTTTTSGGGTSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHC---CCCeEEEEEeeecccCcccccCcccccCCCCCHHHHHHHH
Confidence 99999999988752 579999999999999999755443 245677777765
|
| >3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-27 Score=250.36 Aligned_cols=198 Identities=21% Similarity=0.200 Sum_probs=160.7
Q ss_pred cchhhHHHHHHHhcCC---------CCcEEEc--cccc---HHHHHHcCC-CHHHHHHHhhcCCCCCCCCCCCccccCCC
Q 016903 70 TSGEEAINIASAAAIK---------NDDFVVP--QYRE---PGVLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGSN 134 (380)
Q Consensus 70 ~~G~Ea~~~~~~~~l~---------~~D~v~~--~yR~---~~~~l~~G~-~~~~~~~e~~g~~~~~~~G~~~~~H~~~~ 134 (380)
++|---+.+++...|+ +.|.++. .|-+ .++++..|+ ...+-|..++. .|+..++|+...
T Consensus 32 ~lg~~ei~~~L~~~~~~~p~~p~~~~rDrfvls~GH~~~~lYa~l~l~G~~~~~~~l~~~r~------~~s~~~ghp~~~ 105 (632)
T 3l84_A 32 PLGLADILSVLSYHLKHNPKNPTWLNRDRLVFSGGHASALLYSFLHLSGYDLSLEDLKNFRQ------LHSKTPGHPEIS 105 (632)
T ss_dssp HHHHHHHHHHHTTTCCCCTTCTTCTTSCEEEESSGGGHHHHHHHHHHHTCSCCHHHHTTTTC------TTCSSCSSCCTT
T ss_pred ChhHHHHHHHHHHHhCcCCCCCCCCCCCEEEEcCCcccHHHHHHHHHhCCCCCHHHHHHHhc------CCCCCCCCCCCC
Confidence 4444444445555564 4577765 4666 566667886 44444556654 355567888765
Q ss_pred CCCccccCcccccchHHHHHHHHHhhhcCC-------CCeeEEEeCccccCcchHHHHHHHHHHcCCC-EEEEEEcCCcc
Q 016903 135 KHNYFTVSSTIATQLPHAVGAAYALKMDRK-------DACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWA 206 (380)
Q Consensus 135 ~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~-------~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi~vv~NN~~~ 206 (380)
.+++..++|++|+++|.|+|+|+|.++++. +++|||++|||++++|++||++++|++++|| +|+|++||+|+
T Consensus 106 ~~g~~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~d~~v~~v~GDG~~~eG~~~Eal~~A~~~~L~~livi~nnN~~~ 185 (632)
T 3l84_A 106 TLGVEIATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGISYEACSLAGLHKLDNFILIYDSNNIS 185 (632)
T ss_dssp STTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTTCCCCEEEEEEHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEE
T ss_pred CCCcccCCcchhhHHHHHHHHHHHHHhhccccccCCCCCeEEEEECCcchhhccHHHHHHHHHHcCCCcEEEEEECCCcc
Confidence 678888999999999999999999997653 8999999999999999999999999999995 99999999999
Q ss_pred cccccccccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCC
Q 016903 207 ISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDS 278 (380)
Q Consensus 207 ~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~ 278 (380)
+++++.... ..++.+++++|||++++|||||++++.+++++|.+ .++|+||+++|+|.+||+...++
T Consensus 186 i~~~~~~~~-~~d~~~~~~a~G~~~~~vdGhd~~~l~~al~~A~~----~~~P~lI~v~T~kG~G~~~~e~~ 252 (632)
T 3l84_A 186 IEGDVGLAF-NENVKMRFEAQGFEVLSINGHDYEEINKALEQAKK----STKPCLIIAKTTIAKGAGELEGS 252 (632)
T ss_dssp TTEEGGGTC-CCCHHHHHHHTTCEEEEEETTCHHHHHHHHHHHHT----CSSCEEEEEECCTTTTCGGGTTC
T ss_pred cccchhhhc-ChhHHHHHHHcCCeEEEEeeCCHHHHHHHHHHHHh----CCCCEEEEEeeEeeecCCCCCCc
Confidence 998877654 57899999999999999999999999998887753 68999999999999999875543
|
| >2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-28 Score=260.17 Aligned_cols=196 Identities=23% Similarity=0.229 Sum_probs=161.6
Q ss_pred CcEEEc--cccc---HHHHHHcCC-CHHHHHHHhhcCCCCCCCCCCCccccCCC-CCCccccCcccccchHHHHHHHHHh
Q 016903 87 DDFVVP--QYRE---PGVLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYAL 159 (380)
Q Consensus 87 ~D~v~~--~yR~---~~~~l~~G~-~~~~~~~e~~g~~~~~~~G~~~~~H~~~~-~~~~~~~~g~lG~~lp~A~G~A~A~ 159 (380)
.|.++. .|-+ .+++...|+ ...+-|..++. .|+..++|+... .+++...+|+||+++|.|+|+|+|.
T Consensus 57 rDr~v~s~GH~~~~lYa~~~l~G~~~~~~~l~~~r~------~~~~~~ghp~~~~~~g~~~~~G~lG~gl~~AvG~AlA~ 130 (669)
T 2r8o_A 57 RDRFVLSNGHGSMLIYSLLHLTGYDLPMEELKNFRQ------LHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAE 130 (669)
T ss_dssp CCEEEESSGGGHHHHHHHHHHHTCSCCHHHHTTTTS------TTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHH
T ss_pred CCeEEEeCccHHHHHHHHHHHcCCCCCHHHHHHhhc------CCCCCCCCCCccCCCCcccccccccchHHHHHHHHHHH
Confidence 355544 4666 456666786 33444555554 255557888643 4688889999999999999999999
Q ss_pred hhcC----------CCCeeEEEeCccccCcchHHHHHHHHHHcCCC-EEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 160 KMDR----------KDACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 160 k~~~----------~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
++.+ .+++|||++|||++++|++||+|++|++++|| +|+||+||+|++++++.... ..++.+++++||
T Consensus 131 ~~~~~~~n~~~~~~~~~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~-~~d~~~~~~a~G 209 (669)
T 2r8o_A 131 KTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWF-TDDTAMRFEAYG 209 (669)
T ss_dssp HHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHHTT
T ss_pred HHhccccccCccCCcCCeEEEEECHhHhcchHHHHHHHHHHHcCCCcEEEEEECCCcEecccccccc-CccHHHHHHHCC
Confidence 8654 37899999999999999999999999999996 99999999999998877554 578999999999
Q ss_pred ceEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCC-CCCC---CCCCChhhHHHHHh
Q 016903 229 VRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT-SDDS---TKYRPVDEIEWWRT 292 (380)
Q Consensus 229 ~~~~-~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~-~Dd~---~~Yr~~~e~~~~~~ 292 (380)
|+++ +|||||+.++++++++|.+ ..++|+||+++|+|..||+. .+++ ..||+++|++.|++
T Consensus 210 ~~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~~~T~kg~G~~~~~~~~~~H~~~~~~ee~~~~~~ 275 (669)
T 2r8o_A 210 WHVIRDIDGHDAASIKRAVEEARA---VTDKPSLLMCKTIIGFGSPNKAGTHDSHGAPLGDAEIALTRE 275 (669)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTCTTTTTSGGGTSSCCCHHHHHHHHH
T ss_pred CeEEeEECCCCHHHHHHHHHHHHh---cCCCCEEEEEEeEeccCcCCcCCCCcccCCCCCHHHHHHHHH
Confidence 9999 9999999999999999875 25799999999999999995 4433 57999999999863
|
| >3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-28 Score=260.96 Aligned_cols=185 Identities=23% Similarity=0.239 Sum_probs=141.7
Q ss_pred CcEEEc--cccc---HHHHHHcCC-CHHHHHHHhhcCCCCCCCCCCCccccCCC-CCCccccCcccccchHHHHHHHHHh
Q 016903 87 DDFVVP--QYRE---PGVLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYAL 159 (380)
Q Consensus 87 ~D~v~~--~yR~---~~~~l~~G~-~~~~~~~e~~g~~~~~~~G~~~~~H~~~~-~~~~~~~~g~lG~~lp~A~G~A~A~ 159 (380)
.|.++. .|-+ .+++...|+ ...+-|..|+. .|+..++|+... .+++..++|+||+++|.|+|+|+|.
T Consensus 98 rDrfvls~GH~s~~lYa~l~l~G~~~~~~~l~~~r~------~~s~~~ghp~~~~~~gve~~tG~lG~gl~~AvG~AlA~ 171 (711)
T 3uk1_A 98 RDRFVLSNGHGSMLLYSLLHLTGYDLPIEELKNFRQ------LHSKTPGHPEYGITPGVETTTGPLGQGLANAVGMALGE 171 (711)
T ss_dssp CCEEEECSGGGHHHHHHHHHHHTCSCCHHHHHTTTS------TTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHH
T ss_pred CCeEEEeCCcccHHHHHHHHHhCCCCCHHHHHhhcc------ccCCCCCCCCCCCCCCcccCccchhhHHHHHHHHHHHH
Confidence 576664 4666 345566787 45555666664 255667888643 4688889999999999999999999
Q ss_pred hhcCC----------CCeeEEEeCccccCcchHHHHHHHHHHcCCC-EEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 160 KMDRK----------DACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 160 k~~~~----------~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
++.+. +++|||++|||++++|++||+|++|++++|| +|+||+||+|++++++.... ..++.+++++||
T Consensus 172 ~~~~~~~n~~~~~~~d~~vv~i~GDG~l~eG~~~Eal~~A~~~~L~~livI~dnN~~~i~~~~~~~~-~~d~~~~~~a~G 250 (711)
T 3uk1_A 172 ALLAAEFNRDDAKIVDHHTYVFLGDGCLMEGISHEACSLAGTLKLNKLIALYDDNGISIDGDVVNWF-HDDTPKRFEAYG 250 (711)
T ss_dssp HHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHHTT
T ss_pred HhhcccccccccccCCCeEEEEECCcchhhccHHHHHHHHHHhCCCcEEEEEECCCcccccchhhhc-CCCHHHHHHHcC
Confidence 87653 7899999999999999999999999999996 99999999999998887664 578999999999
Q ss_pred ceEEE-EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCC
Q 016903 229 VRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYR 282 (380)
Q Consensus 229 ~~~~~-VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr 282 (380)
|++++ |||||++++.+++++|. +.++|+||+++|+|.+||+..+++..|.
T Consensus 251 ~~~~~~vdG~d~~~l~~Al~~A~----~~~~P~lI~v~T~kG~G~~~~e~~~~~H 301 (711)
T 3uk1_A 251 WNVIPNVNGHDVDAIDAAIAKAK----RSDKPSLICCKTRIGNGAATKAGGHDVH 301 (711)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHT----TCSSCEEEEEEC----------------
T ss_pred CcEEEEeCCCCHHHHHHHHHHHH----hCCCCEEEEEccccccCCCCCCCccccc
Confidence 99999 99999999999888775 3689999999999999998765554443
|
| >3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=9.2e-28 Score=254.16 Aligned_cols=186 Identities=24% Similarity=0.260 Sum_probs=152.2
Q ss_pred CCcEEEc--cccc---HHHHHHcCC-CHHHHHHHhhcCCCCCCCCCCCccccCC-CCCCccccCcccccchHHHHHHHHH
Q 016903 86 NDDFVVP--QYRE---PGVLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYA 158 (380)
Q Consensus 86 ~~D~v~~--~yR~---~~~~l~~G~-~~~~~~~e~~g~~~~~~~G~~~~~H~~~-~~~~~~~~~g~lG~~lp~A~G~A~A 158 (380)
+.|.++. .|-+ .+++...|+ ...+-|..++. .|+..++|+.. ..+++..++|++|+++|.|+|+|+|
T Consensus 82 ~rDrfvls~GH~~~~lYa~l~l~G~~~~~~~l~~~rq------~gs~~~Ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA 155 (690)
T 3m49_A 82 NRDRFVLSAGHGSMLLYSLLHLSGYDVTMDDLKNFRQ------WGSKTPGHPEYGHTAGVDATTGPLGQGIATAVGMAMA 155 (690)
T ss_dssp TSCEEEESSGGGHHHHHHHHHHTTSSCCHHHHTTTTC------TTCSSCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHH
T ss_pred CCCeEEECCccHHHHHHHHHHHHCCCCCHHHHHhhcc------CCCCCCCCCCCCCCCccccCCccccccHHHHHHHHHH
Confidence 4576664 3555 355566786 34444555654 36667789875 3578888999999999999999999
Q ss_pred hhhcCC----------CCeeEEEeCccccCcchHHHHHHHHHHcCCC-EEEEEEcCCcccccccccccCCcCHHHHHhhc
Q 016903 159 LKMDRK----------DACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAY 227 (380)
Q Consensus 159 ~k~~~~----------~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~ 227 (380)
.++.+. +++|||++|||++++|++||++++|++++|| +|+|++||+|++++++.... ..++.+++++|
T Consensus 156 ~~~~~~~~n~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~~A~~~~L~~livI~dnN~~~i~~~~~~~~-~~d~~~~~~a~ 234 (690)
T 3m49_A 156 ERHLAAKYNRDAYNIVDHYTYAICGDGDLMEGVSAEASSLAAHLQLGRLVVLYDSNDISLDGDLNRSF-SESVEDRYKAY 234 (690)
T ss_dssp HHHHHHHHCBTTBCCSCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSBCSSSBGGGTC-CCCHHHHHHHH
T ss_pred HHHhhccccccccccCCCeEEEEECchhhhhccHHHHHHHHHHhCCCeEEEEEECCCeecccchhhcc-chhHHHHHHHc
Confidence 987543 7899999999999999999999999999995 99999999999998876543 57899999999
Q ss_pred CceEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCC
Q 016903 228 GVRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKY 281 (380)
Q Consensus 228 G~~~~~V-dG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Y 281 (380)
||++++| ||||++++.+++++|.+ ..++|+||+|+|+|.+|++..+++..|
T Consensus 235 G~~~~~v~DG~d~~~l~~Al~~a~~---~~~~P~lI~v~T~kG~G~~~~~~~~~~ 286 (690)
T 3m49_A 235 GWQVIRVEDGNDIEAIAKAIEEAKA---DEKRPTLIEVRTTIGFGSPNKSGKSAS 286 (690)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTCTTTTTSGGG
T ss_pred CCcEEEEecCCCHHHHHHHHHHHHh---cCCCCEEEEEEeecccccCcccCcccc
Confidence 9999999 99999999998877764 258999999999999999866554433
|
| >3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.8e-28 Score=254.50 Aligned_cols=193 Identities=23% Similarity=0.219 Sum_probs=151.6
Q ss_pred CcEEEc--cccc---HHHHHHcCC-CHHHHHHHhhcCCCCCCCCCCCccccCCC-CCCccccCcccccchHHHHHHHHHh
Q 016903 87 DDFVVP--QYRE---PGVLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYAL 159 (380)
Q Consensus 87 ~D~v~~--~yR~---~~~~l~~G~-~~~~~~~e~~g~~~~~~~G~~~~~H~~~~-~~~~~~~~g~lG~~lp~A~G~A~A~ 159 (380)
.|.++. .|-+ ++++...|+ ...+-+..|+. .|+..++|+... .+++..++|+||+++|+|+|+|+|.
T Consensus 59 rDrfvls~GH~s~~lYa~l~l~G~~~~~~~l~~~r~------~~s~~~ghp~~~~~~gve~~tG~lG~gl~~AvG~AlA~ 132 (663)
T 3kom_A 59 RDRFVLSNGHGSMLLYSLLHLTGYDLSIEDIKNFRQ------LHSKTPGHPEYGYTPGVETTTGPLGQGVANAVGMALGE 132 (663)
T ss_dssp SCEEEECSSSCHHHHHHHHHHHTCSCCHHHHTTTTS------TTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHH
T ss_pred CCeEEEeCCcccHHHHHHHHHhCCCCCHHHHHhhcc------CCCCCCCCCCCCCCCCcccCCcchhhHHHHHHHHHHhH
Confidence 577664 4666 344556786 44455666654 356667888653 5688889999999999999999999
Q ss_pred hhcCC----------CCeeEEEeCccccCcchHHHHHHHHHHcCCC-EEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 160 KMDRK----------DACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 160 k~~~~----------~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
++.+. +++|+|++|||++++|++||+|++|++++|| +|+|++||+|++++++.... ..++.+++++||
T Consensus 133 ~~~~~~~~~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~~A~~~~L~~livi~dnN~~~i~~~~~~~~-~~d~~~~~~a~G 211 (663)
T 3kom_A 133 KLLSDRYNTPDLKVIDHHTYVFLGDGCLMEGVSHEACSLAGTLGLNKLVAFWDDNNISIDGDTKGWF-SDNTPERFRAYG 211 (663)
T ss_dssp HHHHHHHCBTTBCSCCCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECC-----CGGGTC-CCCHHHHHHHTT
T ss_pred HhhcccccccccccCCCeEEEEECchhhhhchHHHHHHHHHHhCCCeEEEEEECCCcccccchhhhc-chhHHHHHHHCC
Confidence 87653 7899999999999999999999999999996 99999999999998877654 578999999999
Q ss_pred ceEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCC----ChhhHHH
Q 016903 229 VRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYR----PVDEIEW 289 (380)
Q Consensus 229 ~~~~-~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr----~~~e~~~ 289 (380)
|+++ +|||||+.++.+++++|.+. .++|+||+++|+|.+||+...++..|. +++|++.
T Consensus 212 ~~~~~~vdG~d~~~l~~al~~A~~~---~~~P~lI~~~T~kg~G~~~~e~~~~~Hg~~l~~e~~~~ 274 (663)
T 3kom_A 212 WHVIENVDGHDFVAIEKAINEAHSQ---QQKPTLICCKTVIGFGSPEKAGTASVHGSPLSDQERAS 274 (663)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHC---SSSCEEEEEECCTTTTCTTTTTCSSTTSSCCCHHHHHH
T ss_pred CeEEEEEcCCCHHHHHHHHHHHHhc---CCCCEEEEEecccccccCCCCCCccccCCCCCHHHHHH
Confidence 9999 89999999999998887642 589999999999999998765543332 3455544
|
| >2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.2e-26 Score=247.45 Aligned_cols=211 Identities=17% Similarity=0.161 Sum_probs=165.5
Q ss_pred hHHHHHHHhcCC------CCcEEEc-cccc---HHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCC-CCC-cccc
Q 016903 74 EAINIASAAAIK------NDDFVVP-QYRE---PGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSN-KHN-YFTV 141 (380)
Q Consensus 74 Ea~~~~~~~~l~------~~D~v~~-~yR~---~~~~l~~G~~~~~~~~e~~g~~~~~~~G~~~~~H~~~~-~~~-~~~~ 141 (380)
|...+.....|+ +.|+|+. .|-+ +++++..|+..++-|..|+.-. .+.+++.|+... .++ ....
T Consensus 115 el~~~l~~~~~~~~~~~~~~D~V~~~GH~sp~~Ya~~~l~Gr~~~e~l~~fRq~~----~~~gl~~~p~~~~~p~~~~~~ 190 (886)
T 2qtc_A 115 TIYDVCFNHFFRARNEQDGGDLVYFQGHISPGVYARAFLEGRLTQEQLDNFRQEV----HGNGLSSYPHPKLMPEFWQFP 190 (886)
T ss_dssp HHHHHHHHHTCCCCCSSSCCCEEECCGGGHHHHHHHHHHTTSSCHHHHTTBTCCT----TSSCBCSSCCTTTSTTTCCCC
T ss_pred HHHHHHHHHhcCCCCCCCCCCEEEEcchhHHHHHHHHHHhCCCCHHHHHhccCCC----CCCCCCCCCCcccCCCccccc
Confidence 444444444566 4687777 4776 5667788986666677666421 245677777654 244 6778
Q ss_pred CcccccchHHHHHHHHHhhh-------cCCCCeeEEEeCccccCcchHHHHHHHHHHcCC-CEEEEEEcCCccccccccc
Q 016903 142 SSTIATQLPHAVGAAYALKM-------DRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISD 213 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~-------~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~~~~~~~~~~ 213 (380)
+|++|.+++.|+|+|++.|+ ++.+++|+|++|||++++|++|||||+|++++| |+||||+||++++++++..
T Consensus 191 tG~~G~g~s~AiG~A~a~~~l~~~~~~~~~~~~v~aviGDG~l~eG~~~EAl~~A~~~~L~nli~Vvn~N~~si~~~v~~ 270 (886)
T 2qtc_A 191 TVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRLDGPVTG 270 (886)
T ss_dssp CCSTTHHHHHHHHHHHHHHHHHHTTSCCCTTCCEEEEEETGGGGSHHHHTTHHHHHHTTCTTEEEEEEECSBCSSSBSCT
T ss_pred ccccCccHHHHHHHHHHhhhhcccccccCCCCEEEEEECCccccccchHHHHHHHHHcCCCcEEEEEECCCcccCCCccc
Confidence 99999999999999999998 778999999999999999999999999999999 6999999999999998875
Q ss_pred cc-CCcCHHHHHhhcCceEEEE----------------------------------------------------------
Q 016903 214 QF-RSDGAVVKGRAYGVRSIRV---------------------------------------------------------- 234 (380)
Q Consensus 214 ~~-~~~~~~~~a~a~G~~~~~V---------------------------------------------------------- 234 (380)
.. ...++.++++++||++++|
T Consensus 271 ~~~~~~~l~~~~~~~G~~~~~v~~g~~~~~ll~~~~~~~l~~~~~~~~d~~~q~~~~~~g~~~r~~~F~~~~~~~~l~~~ 350 (886)
T 2qtc_A 271 NGKIINELEGIFEGAGWNVIKVMWGSRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYVREHFFGKYPETAALVAD 350 (886)
T ss_dssp TSCHHHHHHHHHHHTTCEEEEECBCTTHHHHHHHCSSCHHHHHHHHCCHHHHHHHTTSCHHHHHHHTSTTSHHHHTTTTT
T ss_pred cccccHHHHHHHHhCCCCEEEEecchhHHHHHccCCchHHHHHHHhccchhhhhhhhccchHHHHhhcccchHHHHHHhh
Confidence 32 3467889999999999998
Q ss_pred -----------eCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCC--CCCCC----CCCChhhHHHHH
Q 016903 235 -----------DGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT--SDDST----KYRPVDEIEWWR 291 (380)
Q Consensus 235 -----------dG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~--~Dd~~----~Yr~~~e~~~~~ 291 (380)
||||+.+|++++++|.++ .++|+||+++|+|.+||+. .++.. .|++.++++.|+
T Consensus 351 ~~d~~i~~l~~dGhD~~~l~~a~~~A~~~---~~~PtlI~~~T~KG~G~~~~~e~~~~~H~~~~l~~~~~~~~r 421 (886)
T 2qtc_A 351 WTDEQIWALNRGGHDPKKIYAAFKKAQET---KGKATVILAHTIKGYGMGDAAKGKNIAHQVKKMNMDGVRHIR 421 (886)
T ss_dssp CCHHHHHTCCBGGGCHHHHHHHHHHHHHC---CSSCEEEEEECCTTTTCTTCC-------------CHHHHHHH
T ss_pred cChhhHhhcccCCCCHHHHHHHHHHHHHc---CCCCEEEEEeeeeccccchhhcCCccccCCCCCCHHHHHHHH
Confidence 699999999999999874 4689999999999999973 22221 278888888886
|
| >4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=5.3e-24 Score=223.45 Aligned_cols=164 Identities=17% Similarity=0.218 Sum_probs=129.0
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cccccc---------
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTP--------- 210 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~--------- 210 (380)
..|+||.++|.|+|++++. ++++|||++|||+++++ +++|++|+++++|+++||.||+ |++...
T Consensus 418 ~~g~~G~~l~~A~Gaala~----~~~~vv~~~GDG~~~~~--~~~l~~a~~~~lp~~~vv~nN~~~~~~~~~~~~~~~~~ 491 (603)
T 4feg_A 418 LFATMGVGIPGAIAAKLNY----PERQVFNLAGDGGASMT--MQDLATQVQYHLPVINVVFTNCQYGFIKDEQEDTNQND 491 (603)
T ss_dssp SSCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSBCHHHHHHHHHHCSSC
T ss_pred ccccccchhHHHhhHHHhC----CCCcEEEEeccHHHhhh--HHHHHHHHHHCcCeEEEEEECCchHHHHHHHHHhcCCC
Confidence 3589999999999999884 57899999999999876 6779999999999887777664 876321
Q ss_pred -cccccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe---ecCCCCCCCCCCCCCCChh-
Q 016903 211 -ISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT---YRVGHHTTSDDSTKYRPVD- 285 (380)
Q Consensus 211 -~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t---~R~~gHs~~Dd~~~Yr~~~- 285 (380)
........++.+++++||+++++|+ ++.++.+++++|++ .+.+||+|||+.| +|..+|.+.|++..||..+
T Consensus 492 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~--~~~~gP~lIev~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (603)
T 4feg_A 492 FIGVEFNDIDFSKIADGVHMQAFRVN--KIEQLPDVFEQAKA--IAQHEPVLIDAVITGDRPLPAEKLRLDSAMSSAADI 567 (603)
T ss_dssp CCSSBCCCCCHHHHHHHTTCEEEEEC--BGGGHHHHHHHHHH--HTTTSCEEEEEECCCCCCCCTTSCCCCTTTSCHHHH
T ss_pred cccCcCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHH--hcCCCcEEEEEEeCCCCCCCcccchhhhhhhhHHHH
Confidence 1112245689999999999999998 67788877777762 1468999999999 6667899999999998665
Q ss_pred -hHHHHHhcCChHHHHHHHHHHcCCCCHHHH
Q 016903 286 -EIEWWRTTQDPVTRFRKWIESNGWWNGDIE 315 (380)
Q Consensus 286 -e~~~~~~~~DPi~~~~~~L~~~g~~t~~e~ 315 (380)
+...|+ .+||+.+|+++|.+.|+|++++.
T Consensus 568 ~~~~~~~-~~d~~~~~~~~l~~~g~~~~~~~ 597 (603)
T 4feg_A 568 EAFKQRY-EAQDLQPLSTYLKQFGLDDLQHQ 597 (603)
T ss_dssp HHHHHHH-TCTTCCCHHHHHHHTTC------
T ss_pred HHHHhhC-CcccCCchHHHHHHcCCchhhhh
Confidence 556665 49999999999999999988754
|
| >3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=5.2e-18 Score=181.00 Aligned_cols=140 Identities=20% Similarity=0.211 Sum_probs=124.1
Q ss_pred CccccCCCCCCccccCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcch---HHHHHHHHHHcCC-CEEEEEEc
Q 016903 127 MPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGD---FHAALNFSAVTEA-PVIFICRN 202 (380)
Q Consensus 127 ~~~H~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~---~~Eal~~A~~~~L-pvi~vv~N 202 (380)
.++|+....+|+...+|+||+|++.|+|+|+ .+++..|+|++|||+.++|. .||+.+++..++| +||.|+++
T Consensus 159 ~pgHp~~~tpGve~~tG~LGqGls~AvG~A~----~~~~~~v~~~~GDGe~e~GsLAg~wea~~~~~~~~l~nl~~i~D~ 234 (845)
T 3ahc_A 159 IPSHFAPETPGSIHEGGELGYALSHAYGAVM----NNPSLFVPCIIGDGEAETGPLATGWQSNKLVNPRTDGIVLPILHL 234 (845)
T ss_dssp BCSSCCTTSTTCSCCCSSTTCHHHHHHHHHT----TCTTCEEEEEEETTGGGSHHHHHHGGGGGSCCTTTSCEEEEEEEE
T ss_pred CCCCCCCCCCCeecCCCCccchHhHHhhhhh----cCCCCeEEEEECCCchhhhcchhhhHHhhhhhhhcCCCEEEEEEC
Confidence 8899976668999999999999999999994 46788999999999999999 9999999999999 79999999
Q ss_pred CCcccccccccc-cCCcCHHHHHhhcCceEE-EEeC-C--CHHHHHHHHHHHHH-----------Hhhc--cCCc--EEE
Q 016903 203 NGWAISTPISDQ-FRSDGAVVKGRAYGVRSI-RVDG-N--DALAIYSAVHAARE-----------MAIG--EGRP--ILI 262 (380)
Q Consensus 203 N~~~~~~~~~~~-~~~~~~~~~a~a~G~~~~-~VdG-~--D~~av~~a~~~a~~-----------~ar~--~~gP--~lI 262 (380)
|+++|+.++... .+..++.+++++|||.++ .||| | |+.++..++.+|++ .+|+ .++| ++|
T Consensus 235 N~~~i~g~t~l~~~~~e~l~~rf~a~Gw~v~~~vdG~~~~D~~~i~~a~~~al~~~~~~i~~i~~~A~~~~~~kP~w~~I 314 (845)
T 3ahc_A 235 NGYKIANPTILARISDEELHDFFRGMGYHPYEFVAGFDNEDHMSIHRRFAELFETIFDEICDIKAAAQTDDMTRPFYPML 314 (845)
T ss_dssp CSBSSSSBCHHHHSCHHHHHHHHHHTTEEEEEEECSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCEEEE
T ss_pred CCCcCCCCccccccCcHHHHHHHHHCCCEEeEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEE
Confidence 999999998643 456789999999999999 9999 9 99999998876663 2444 3689 999
Q ss_pred EEEeecCC
Q 016903 263 EALTYRVG 270 (380)
Q Consensus 263 e~~t~R~~ 270 (380)
.++|.+.+
T Consensus 315 i~rT~kG~ 322 (845)
T 3ahc_A 315 IFRTPKGW 322 (845)
T ss_dssp EEECCTTT
T ss_pred EEECcccC
Confidence 99999999
|
| >1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=6.9e-17 Score=168.99 Aligned_cols=121 Identities=17% Similarity=0.200 Sum_probs=101.2
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEE-cCCcccccccccc-----
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICR-NNGWAISTPISDQ----- 214 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~-NN~~~~~~~~~~~----- 214 (380)
..|+||+++|.|+|+|+|. ++++|||++|||+|+++ +++|++|+++++|+++||. ||+|++.......
T Consensus 411 ~~g~mG~~l~~AiGaala~----~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~q~~~~~~~ 484 (590)
T 1v5e_A 411 LFATMGIAIPGGLGAKNTY----PDRQVWNIIGDGAFSMT--YPDVVTNVRYNMPVINVVFSNTEYAFIKNKYEDTNKNL 484 (590)
T ss_dssp SSCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCTTGGGTTSSSCCSC
T ss_pred CCCcccChHHHHHHHHHhC----CCCeEEEEEechHHhch--HHHHHHHHHhCCCCEEEEEECCchHHHHHHHHHhcCCC
Confidence 4699999999999999985 57899999999999876 5889999999999666665 5578887643221
Q ss_pred ----cCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCC
Q 016903 215 ----FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 270 (380)
Q Consensus 215 ----~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~ 270 (380)
....|+.+++++||+++++|+ +++++.+++++|++.+|. ++|+|||+.|+|..
T Consensus 485 ~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~~~~~-~gp~liev~~~~~~ 541 (590)
T 1v5e_A 485 FGVDFTDVDYAKIAEAQGAKGFTVS--RIEDMDRVMAEAVAANKA-GHTVVIDCKITQDR 541 (590)
T ss_dssp CCCCCCCCCHHHHHHHTTSEEEEEC--BHHHHHHHHHHHHHHHHT-TCCEEEEEECCSCC
T ss_pred ccccCCCCCHHHHHHHcCCEEEEEC--CHHHHHHHHHHHHHhcCC-CCCEEEEEEecccc
Confidence 234689999999999999998 789999999999876554 79999999998754
|
| >2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.67 E-value=6.9e-17 Score=169.74 Aligned_cols=122 Identities=20% Similarity=0.187 Sum_probs=100.6
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccccccccc-------
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPIS------- 212 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~~~~~~~------- 212 (380)
..|++|+++|.|+|+|+|. ++++|||++|||+|+++ +++|++|+++++|+++||.|| +|++.....
T Consensus 440 ~~G~~G~~l~~AiGaala~----~~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~ 513 (616)
T 2pan_A 440 QAGPLGWTIPAALGVCAAD----PKRNVVAISGDFDFQFL--IEELAVGAQFNIPYIHVLVNNAYLGLIRQSQRAFDMDY 513 (616)
T ss_dssp TTCCTTCHHHHHHHHHHHC----TTCEEEEEEEHHHHHHT--GGGHHHHHHTTCCCEEEEEECSBCHHHHHHGGGGTCCC
T ss_pred CcccccchHHHHHHHHHhC----CCCcEEEEEcchhhhCC--HHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCc
Confidence 3689999999999999985 57899999999999875 578999999999976655555 588754311
Q ss_pred -------c--ccC----CcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCC
Q 016903 213 -------D--QFR----SDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 270 (380)
Q Consensus 213 -------~--~~~----~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~ 270 (380)
. ... ..++.+++++||+++++|+ +++++.+++++|++++|..++|+|||+.|.|..
T Consensus 514 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~gp~lIev~~~~~~ 582 (616)
T 2pan_A 514 CVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF--KPEDIAPAFEQAKALMAQYRVPVVVEVILERVT 582 (616)
T ss_dssp SCBCCCCCTTCGGGTTCCCCHHHHHHHTTCEEEEEC--SGGGHHHHHHHHHHHHHHHCSCEEEEEEBCSCC
T ss_pred cccccccccccccCCCCCCCHHHHHHHcCCeEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEecccc
Confidence 0 111 2689999999999999998 789999999999987777789999999999865
|
| >2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.9e-16 Score=164.57 Aligned_cols=117 Identities=18% Similarity=0.239 Sum_probs=97.1
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEE-EcCCcccccccc-------c
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPIS-------D 213 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv-~NN~~~~~~~~~-------~ 213 (380)
.|+||+++|.|+|+|+|.| +++++|||++|||+++++ +++|++|+++++|+++|| +||+|++....+ .
T Consensus 418 ~g~~G~~l~~AiGaa~a~~--~~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~ 493 (563)
T 2uz1_A 418 LGSMGVGFGTALGAQVADL--EAGRRTILVTGDGSVGYS--IGEFDTLVRKQLPLIVIIMNNQSWGATLHFQQLAVGPNR 493 (563)
T ss_dssp TCCTTTHHHHHHHHHHHHH--HHTCEEEEEEEHHHHGGG--TTHHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHTCTTC
T ss_pred CccccChHHHHHHHHHHhh--CCCCeEEEEEccHHHhCC--HHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCCc
Confidence 5899999999999999986 567899999999999886 468999999999966655 555788765421 1
Q ss_pred c----cCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 214 Q----FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 214 ~----~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
. ....++.+++++||+++++|+ +++++.+++++|++ .++|+|||+.|++
T Consensus 494 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~----~~gp~liev~~~~ 546 (563)
T 2uz1_A 494 VTGTRLENGSYHGVAAAFGADGYHVD--SVESFSAALAQALA----HNRPACINVAVAL 546 (563)
T ss_dssp CCSCBCCCCCHHHHHHHTTCEEEEEC--SHHHHHHHHHHHHH----SSSCEEEEEECCS
T ss_pred ccCCcCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHH----CCCCEEEEEEecc
Confidence 1 134689999999999999998 88999999888875 5899999999974
|
| >2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=6.4e-17 Score=168.16 Aligned_cols=121 Identities=14% Similarity=0.163 Sum_probs=98.0
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEE-EcCCcccccccc------c
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPIS------D 213 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv-~NN~~~~~~~~~------~ 213 (380)
..|+||+++|.|+|+|+|.+.++.+++|||++|||+|+++ +++|++|++++||+++|| +||+|++..... .
T Consensus 411 ~~g~mG~~l~~A~Gaala~~~~~~~~~vv~~~GDG~~~~~--~~el~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~ 488 (563)
T 2vk8_A 411 LWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLT--VQEISTMIRWGLKPYLFVLNNDGYTIQKLIHGPKAQYN 488 (563)
T ss_dssp TTCCTTHHHHHHHHHHHHHHHHCTTCCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGGG
T ss_pred chhhhhhHHHHHHHHHHhCcccCCCCCEEEEEcchHhhcc--HHHHHHHHHcCCCcEEEEEECCcchhhhhhhCCCCCcc
Confidence 4699999999999999999888888999999999999864 677999999999966666 555688865321 1
Q ss_pred ccCCcCHHHHHhhcCce---EEEEeCCCHHHHHHHHH-HHHHHhhccCCcEEEEEEeec
Q 016903 214 QFRSDGAVVKGRAYGVR---SIRVDGNDALAIYSAVH-AAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 214 ~~~~~~~~~~a~a~G~~---~~~VdG~D~~av~~a~~-~a~~~ar~~~gP~lIe~~t~R 268 (380)
.....++.+++++||++ +++|+ +++++.++++ ++++ ..++|+|||+.|.+
T Consensus 489 ~~~~~d~~~~a~a~G~~~~~~~~v~--~~~el~~al~~~a~~---~~~~p~liev~~~~ 542 (563)
T 2vk8_A 489 EIQGWDHLSLLPTFGAKDYETHRVA--TTGEWDKLTQDKSFN---DNSKIRMIEVMLPV 542 (563)
T ss_dssp CCCCCCGGGHHHHTTCSSEEEEEEC--BHHHHHHHHTCTTTT---SCSSEEEEEEECCT
T ss_pred cCCCCCHHHHHHHhCCCCCcEEEec--CHHHHHHHHHHHHHh---CCCCcEEEEEEeCc
Confidence 12346899999999999 99999 7888888887 5553 23479999999975
|
| >1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.8e-16 Score=163.53 Aligned_cols=114 Identities=23% Similarity=0.337 Sum_probs=94.3
Q ss_pred cccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Cccccccccc--------
Q 016903 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPISD-------- 213 (380)
Q Consensus 143 g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~~~~~~~~-------- 213 (380)
|+||+++|.|+|+++|. ++++|||++|||+|+++ +++|++|+++++|+++||.|| +|++.+....
T Consensus 401 g~~G~~l~~A~G~a~a~----~~~~vv~~~GDG~~~~~--~~~l~~a~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~ 474 (528)
T 1q6z_A 401 GGLGFALPAAIGVQLAE----PERQVIAVIGDGSANYS--ISALWTAAQYNIPTIFVIMNNGTYGALRWFAGVLEAENVP 474 (528)
T ss_dssp CCTTSHHHHHHHHHHHC----TTSCEEEEEEHHHHTTT--GGGHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHTCCSCC
T ss_pred ccccchHHHHHHHHHhC----CCCcEEEEECCcHHHhh--HHHHHHHHHhCCCeEEEEEeCCcchHhHHHHHHhcCCCcc
Confidence 99999999999999985 46789999999999987 688999999999977777655 5888654311
Q ss_pred --ccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 214 --QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 214 --~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
.....++.+++++||+++++|+ +.+++.+++++++ +.++|+|||+.|.|
T Consensus 475 ~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~----~~~gp~liev~~~~ 525 (528)
T 1q6z_A 475 GLDVPGIDFRALAKGYGVQALKAD--NLEQLKGSLQEAL----SAKGPVLIEVSTVS 525 (528)
T ss_dssp SCBCCCCCHHHHHHHHTCEEEEES--SHHHHHHHHHHHH----TCSSCEEEEEEBCC
T ss_pred cCCCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHH----HCCCcEEEEEEecC
Confidence 1134689999999999999999 6678877777665 36899999999975
|
| >1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.9e-16 Score=164.87 Aligned_cols=117 Identities=20% Similarity=0.260 Sum_probs=96.5
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccccccccc-------
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPIS------- 212 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~~~~~~~------- 212 (380)
..|+||+++|.|+|+|+|. ++++|||++|||+++++ +++|++|.++++|+++||.|| +|++.....
T Consensus 418 g~g~mG~~l~~AiGaala~----~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~ 491 (566)
T 1ozh_A 418 GQQTMGVALPWAIGAWLVN----PERKVVSVSGDGGFLQS--SMELETAVRLKANVLHLIWVDNGYNMVAIQEEKKYQRL 491 (566)
T ss_dssp TTCCTTCHHHHHHHHHHHS----TTSEEEEEEEHHHHHHH--TTHHHHHHHHTCCEEEEEEECSBCHHHHHHHHHHHSSC
T ss_pred CcccccchHHHHHHHHHhC----CCCCEEEEEcChHHhcc--HHHHHHHHHhCCCcEEEEEECCchhHHHHHHHHhcCCC
Confidence 3689999999999999985 57899999999999874 577999999999977766555 688765432
Q ss_pred --cccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 016903 213 --DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 269 (380)
Q Consensus 213 --~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~ 269 (380)
......++.+++++||+++++|+ +++++.++++++++ .++|+|||+.|+|.
T Consensus 492 ~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~liev~~~~~ 544 (566)
T 1ozh_A 492 SGVEFGPMDFKAYAESFGAKGFAVE--SAEALEPTLRAAMD----VDGPAVVAIPVDYR 544 (566)
T ss_dssp CSCBCCCCCHHHHHHTTTSEEEECC--SGGGHHHHHHHHHH----SSSCEEEEEEBCCT
T ss_pred ccCcCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCCC
Confidence 12334689999999999999998 78889888888875 58999999999763
|
| >2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=3.1e-16 Score=163.44 Aligned_cols=116 Identities=25% Similarity=0.318 Sum_probs=95.8
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEE-EcCCcccccccc-------
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPIS------- 212 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv-~NN~~~~~~~~~------- 212 (380)
..|+||+++|.|+|+|+|. ++++|||++|||+|+++ +++|++|+++++|+++|| +||+|++.....
T Consensus 434 g~g~mG~~l~~AiGaa~a~----~~~~vv~i~GDG~~~~~--~~~L~~a~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~ 507 (573)
T 2iht_A 434 GCSSFGYGIPAAIGAQMAR----PDQPTFLIAGDGGFHSN--SSDLETIARLNLPIVTVVVNNDTNGLIELYQNIGHHRS 507 (573)
T ss_dssp SSCCTTCHHHHHHHHHHHS----TTSCEEEEEEHHHHHHT--GGGHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHHSSC
T ss_pred CCcccccHHHHHHHHHHhC----CCCcEEEEEccHHHHhH--HHHHHHHHHhCCCeEEEEEECCcchhhHHHHHHhcCCC
Confidence 3689999999999999985 47889999999999876 578999999999966555 555688776421
Q ss_pred ----cccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 213 ----DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 213 ----~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
......++.+++++||+++++|+ +.+++.++++++++ .++|+|||+.|.|
T Consensus 508 ~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~----~~gp~liev~~~~ 561 (573)
T 2iht_A 508 HDPAVKFGGVDFVALAEANGVDATRAT--NREELLAALRKGAE----LGRPFLIEVPVNY 561 (573)
T ss_dssp CGGGTBCCCCCHHHHHHHTTCEEEECC--SHHHHHHHHHHHHT----SSSCEEEEEEBCC
T ss_pred cCccccCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEECCC
Confidence 22334689999999999999998 88888888887764 5899999999988
|
| >3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=8.7e-16 Score=159.27 Aligned_cols=118 Identities=20% Similarity=0.268 Sum_probs=94.0
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEE-EcCCcccccccc-------
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPIS------- 212 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv-~NN~~~~~~~~~------- 212 (380)
..|+||.++|.|+|+++|. ++++|||++|||+|+++ +++|++|.++++|+++|| +||+|++.....
T Consensus 404 ~~g~mG~~l~~AiGaala~----~~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~nN~~~g~~~~~~~~~~~~~ 477 (549)
T 3eya_A 404 NHGSMANAMPQALGAQATE----PERQVVAMCGDGGFSML--MGDFLSVVQMKLPVKIVVFNNSVLGFVAMEMKAGGYLT 477 (549)
T ss_dssp TTCCTTCHHHHHHHHHHHS----TTSCEEEEEEHHHHHHT--GGGHHHHHHTTCCCEEEEEECSBCCCC-----------
T ss_pred CCchhhhHHHHHHHHHHhC----CCCcEEEEEccchhhcc--HHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHhcCCCC
Confidence 4589999999999999985 57899999999999765 577999999999965555 555687643211
Q ss_pred --cccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCC
Q 016903 213 --DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 270 (380)
Q Consensus 213 --~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~ 270 (380)
......|+.+++++||+++++|+ +++++.++++++++ .+||+|||+.|.|..
T Consensus 478 ~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~----~~gp~liev~~~~~~ 531 (549)
T 3eya_A 478 DGTELHDTNFARIAEACGITGIRVE--KASEVDEALQRAFS----IDGPVLVDVVVAKEE 531 (549)
T ss_dssp -CCBCCCCCHHHHHHHTTSEEEEEC--SGGGHHHHHHHHHH----SSSCEEEEEEBCCCC
T ss_pred cCCcCCCCCHHHHHHHcCCcEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecccc
Confidence 11234689999999999999997 88888888888775 589999999998753
|
| >2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.9e-16 Score=164.14 Aligned_cols=118 Identities=21% Similarity=0.276 Sum_probs=97.4
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEE-cCCcccccccc--------
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICR-NNGWAISTPIS-------- 212 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~-NN~~~~~~~~~-------- 212 (380)
.|+||+++|.|+|+++|. ++++|||++|||+|+++ +++|++|+++++|+++||. ||+|++.....
T Consensus 423 ~g~mG~~l~~AiGaala~----~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~ 496 (589)
T 2pgn_A 423 EGILGCGFPMALGAQLAE----PNSRVFLGTGDGALYYH--FNEFRVAVEHKLPVITMVFTNESYGANWTLMNHQFGQNN 496 (589)
T ss_dssp TCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSBCHHHHHHHHHHHSSCC
T ss_pred cchhhhHHHHHHHHHHhC----CCCcEEEEEeeHHHHhh--HHHHHHHHHhCCCeEEEEEECCCcccchHHHHhhcCCCc
Confidence 589999999999999985 57899999999999875 5889999999999666665 45588766432
Q ss_pred -cccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCC
Q 016903 213 -DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGH 271 (380)
Q Consensus 213 -~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~g 271 (380)
......|+.+++++||+++++|+ +++++.++++++++ .++|+|||+.|+|..+
T Consensus 497 ~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~liev~~~~~~~ 550 (589)
T 2pgn_A 497 WTEFMNPDWVGIAKAFGAYGESVR--ETGDIAGALQRAID----SGKPALIEIPVSKTQG 550 (589)
T ss_dssp SCBCCCCCHHHHHHHHTCEEEECT--TTCCHHHHHHHHHH----HCSCEEEEEECCSSSS
T ss_pred cccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecCCCC
Confidence 12235789999999999999998 67788888888875 4799999999998653
|
| >1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=5e-16 Score=164.84 Aligned_cols=118 Identities=18% Similarity=0.210 Sum_probs=96.4
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEE-EcCCcccccccc-----c-
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPIS-----D- 213 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv-~NN~~~~~~~~~-----~- 213 (380)
..|+||+++|.|+|+++|. ++++|||++|||+|+++ +++|++|+++++|+++|| +||+|++..... .
T Consensus 511 ~~G~mG~~lpaAiGaalA~----p~~~Vv~i~GDGsf~~~--~~eL~ta~~~~l~v~ivV~NN~~~g~~~~~~~~~~~~~ 584 (677)
T 1t9b_A 511 GLGTMGYGLPAAIGAQVAK----PESLVIDIDGDASFNMT--LTELSSAVQAGTPVKILILNNEEQGMVTQWQSLFYEHR 584 (677)
T ss_dssp SSCCTTCHHHHHHHHHHHC----TTSEEEEEEEHHHHHHH--GGGHHHHHHHTCCCEEEEEECSSCHHHHHHHHHHSTTC
T ss_pred CcchhhchHHHHHHHHHhC----CCCeEEEEEeehHHhcc--HHHHHHHHHhCCCeEEEEEeCCCchhhhhhhhhhcCCC
Confidence 3589999999999999984 67899999999999864 566999999999966555 555688754321 1
Q ss_pred ----ccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCC
Q 016903 214 ----QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 270 (380)
Q Consensus 214 ----~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~ 270 (380)
.....|+.+++++||+++++|+ +++++.++++++++ .++|+|||+.|.|..
T Consensus 585 ~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIev~~~~~~ 639 (677)
T 1t9b_A 585 YSHTHQLNPDFIKLAEAMGLKGLRVK--KQEELDAKLKEFVS----TKGPVLLEVEVDKKV 639 (677)
T ss_dssp CCSCCCCCCCHHHHHHHTTCEEEEEC--SHHHHHHHHHHHHH----CSSCEEEEEEBCSSC
T ss_pred cccCcCCCCCHHHHHHHcCCeEEEEC--CHHHHHHHHHHHHH----CCCcEEEEEEecCCc
Confidence 1234689999999999999997 88999998888875 579999999999864
|
| >2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=9e-16 Score=159.78 Aligned_cols=117 Identities=20% Similarity=0.246 Sum_probs=94.5
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEE-EcCCcccccccc------c
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPIS------D 213 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv-~NN~~~~~~~~~------~ 213 (380)
..|+||+++|.|+|+|+|. ++++|||++|||+|+++ +++|++|+++++|+++|| +||+|++..... .
T Consensus 423 ~~g~mG~~l~~A~Gaala~----~~~~vv~~~GDG~~~~~--~~eL~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~ 496 (570)
T 2vbf_A 423 LWGSIGYTFPAALGSQIAD----KESRHLLFIGDGSLQLT--VQELGLSIREKLNPICFIINNDGYTVEREIHGPTQSYN 496 (570)
T ss_dssp TTCCTTTHHHHHHHHHHHC----TTSEEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGGG
T ss_pred cchhhhhhHHHHHHHHHhC----CCCcEEEEEcchhhhcC--HHHHHHHHHcCCCCEEEEEECCchHHHHHHhccCCCcc
Confidence 4699999999999999985 57899999999999874 567999999999866555 566798865332 1
Q ss_pred ccCCcCHHHHHhhcCce-----EEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 214 QFRSDGAVVKGRAYGVR-----SIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 214 ~~~~~~~~~~a~a~G~~-----~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
.....|+.+++++||++ +++|+ +++++.++++++. ++.++|+|||+.|+|
T Consensus 497 ~~~~~d~~~~a~a~G~~~~~~~~~~v~--~~~el~~al~~a~---~~~~~p~liev~~~~ 551 (570)
T 2vbf_A 497 DIPMWNYSKLPETFGATEDRVVSKIVR--TENEFVSVMKEAQ---ADVNRMYWIELVLEK 551 (570)
T ss_dssp CCCCCCGGGHHHHTTCCTTTEEEEEEC--BHHHHHHHHHHHH---HCTTSEEEEEEECCT
T ss_pred CCCCCCHHHHHHHcCCCcCCcceEEec--CHHHHHHHHHHHH---hcCCCcEEEEEEcCc
Confidence 12346899999999998 89998 7888888888742 346899999999976
|
| >1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.7e-15 Score=158.42 Aligned_cols=119 Identities=21% Similarity=0.224 Sum_probs=96.9
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEE-EcCCcccccccc-------
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPIS------- 212 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv-~NN~~~~~~~~~------- 212 (380)
..|++|+++|.|+|+++|. ++++|||++|||+|+++ +++|++|+++++|+++|| +||+|++.....
T Consensus 424 ~~G~~G~~l~~AiGaala~----~~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~ 497 (590)
T 1ybh_A 424 GLGAMGFGLPAAIGASVAN----PDAIVVDIDGDGSFIMN--VQELATIRVENLPVKVLLLNNQHLGMVMQWEDRFYKAN 497 (590)
T ss_dssp SSCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHHHT--TTHHHHHHHTTCCEEEEEEECSBCHHHHHHHHHHSTTC
T ss_pred CcccccchHHHHHHHHHhC----CCCcEEEEEccchhhcc--HHHHHHHHHhCCCcEEEEEECCcchHHHHHHHHhcCCc
Confidence 3589999999999999985 47899999999999875 568999999999966655 555788764311
Q ss_pred ---cc--c------CCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCC
Q 016903 213 ---DQ--F------RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGH 271 (380)
Q Consensus 213 ---~~--~------~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~g 271 (380)
.. . ...|+.+++++||+++++|+ +++++.+++++|++ .++|+|||+.|.|...
T Consensus 498 ~~~~~~~~p~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~liev~~~~~~~ 561 (590)
T 1ybh_A 498 RAHTFLGDPAQEDEIFPNMLLFAAACGIPAARVT--KKADLREAIQTMLD----TPGPYLLDVICPHQEH 561 (590)
T ss_dssp CCSCBCSCGGGTTSCSSCHHHHHHHTTCCEEEEC--BHHHHHHHHHHHHH----SSSCEEEEEECCTTCC
T ss_pred cccccccccccccCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecCCcc
Confidence 00 1 13589999999999999998 88999888888875 4799999999998654
|
| >2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus} | Back alignment and structure |
|---|
Probab=99.60 E-value=8.7e-16 Score=159.75 Aligned_cols=117 Identities=22% Similarity=0.268 Sum_probs=96.0
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEE-EEEcCCccccccccc----cc
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIF-ICRNNGWAISTPISD----QF 215 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~-vv~NN~~~~~~~~~~----~~ 215 (380)
..|+||+++|.|+|+|+|. ++++|||++|||+++++ +++|++|+++++|+++ |++||+|++...... ..
T Consensus 407 ~~g~mG~~l~~A~G~ala~----~~~~vv~~~GDG~~~~~--~~eL~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~ 480 (566)
T 2vbi_A 407 QWGHIGWSVPSAFGNAMGS----QDRQHVVMVGDGSFQLT--AQEVAQMVRYELPVIIFLINNRGYVIEIAIHDGPYNYI 480 (566)
T ss_dssp TTCCTTTHHHHHHHHHHTC----TTSEEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCHHHHTTSCCGGGCC
T ss_pred cccchhhHHHHHHHHHHhC----CCCcEEEEEcchHHHhh--HHHHHHHHHhCCCcEEEEEECCcceEEEeeccCCccCC
Confidence 3689999999999999985 57899999999999874 5679999999998555 555668988765432 22
Q ss_pred CCcCHHHHHhhcCc-----eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 216 RSDGAVVKGRAYGV-----RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 216 ~~~~~~~~a~a~G~-----~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
...|+.+++++||+ ++++|+ +++++.++++++++. .++|+|||+.|.|
T Consensus 481 ~~~d~~~~a~a~G~~~~~~~~~~v~--~~~el~~al~~a~~~---~~gp~liev~~~~ 533 (566)
T 2vbi_A 481 KNWDYAGLMEVFNAGEGHGLGLKAT--TPKELTEAIARAKAN---TRGPTLIECQIDR 533 (566)
T ss_dssp CCCCTTTHHHHHHTTTCCCEEEEEC--SHHHHHHHHHHHHHC---CSSCEEEEEECCT
T ss_pred CCCCHHHHHHHcCCCCCCccEEEeC--CHHHHHHHHHHHHhc---CCCcEEEEEEeCc
Confidence 34689999999999 999998 789998888888752 2799999999976
|
| >2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1e-15 Score=159.28 Aligned_cols=115 Identities=19% Similarity=0.198 Sum_probs=94.6
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEE-EcCCcccccccc-----ccc
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPIS-----DQF 215 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv-~NN~~~~~~~~~-----~~~ 215 (380)
.|+||.++|.|+|+|+|. ++++|||++|||+|+ +.+++|++|+++++|+++|| +||+|++..... ...
T Consensus 421 ~g~mG~~l~~A~G~ala~----~~~~vv~i~GDG~~~--~~~~~l~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~ 494 (565)
T 2nxw_A 421 YAGMGFGVPAGIGAQCVS----GGKRILTVVGDGAFQ--MTGWELGNCRRLGIDPIVILFNNASWEMLRTFQPESAFNDL 494 (565)
T ss_dssp TCCTTCHHHHHHHHHHHT----TTCCEEEEEEHHHHH--HHGGGGGGHHHHTCCCEEEEEECSBCHHHHHHCTTCGGGBC
T ss_pred cccccccchHHHHHHHhC----CCCcEEEEEechHHH--hhHHHHHHHHHhCCCCEEEEEECCCCcEEeeecccCCCCcC
Confidence 589999999999999995 578899999999998 46788999999999966555 555688754321 123
Q ss_pred CCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcE-EEEEEeec
Q 016903 216 RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPI-LIEALTYR 268 (380)
Q Consensus 216 ~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~-lIe~~t~R 268 (380)
...++.+++++||+++++|+ +++++.++++++++ .++|+ |||+.|+|
T Consensus 495 ~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~~liev~~~~ 542 (565)
T 2nxw_A 495 DDWRFADMAAGMGGDGVRVR--TRAELKAALDKAFA----TRGRFQLIEAMIPR 542 (565)
T ss_dssp CCCCHHHHTGGGTSEEEEEC--BHHHHHHHHHHHHH----CCSSCEEEEEECCT
T ss_pred CCCCHHHHHHHcCCCEEEeC--CHHHHHHHHHHHHh----cCCCeEEEEEEccc
Confidence 45689999999999999998 78899888888875 46898 99999975
|
| >2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.7e-15 Score=157.66 Aligned_cols=117 Identities=20% Similarity=0.239 Sum_probs=96.2
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEE-EEEcCCccccccccc----cc
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIF-ICRNNGWAISTPISD----QF 215 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~-vv~NN~~~~~~~~~~----~~ 215 (380)
..|+||+++|.|+|+|+|. ++++|||++|||+|+++ +++|++|.++++|+++ |++||+|++...... ..
T Consensus 411 ~~g~~G~~l~~A~G~ala~----~~~~vv~i~GDGs~~~~--~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~ 484 (568)
T 2wvg_A 411 QWGHIGWSVPAAFGYAVGA----PERRNILMVGDGSFQLT--AQEVAQMVRLKLPVIIFLINNYGYTIEVMIHDGPYNNI 484 (568)
T ss_dssp TTCCTTTHHHHHHHHHHHC----TTSEEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCHHHHTTSCCGGGCC
T ss_pred CcchhhhHHHHHHHHHHhC----CCCcEEEEEcChhHhcc--HHHHHHHHHcCCCcEEEEEECCcceEeeeeccCCCcCC
Confidence 4689999999999999985 57899999999999863 6679999999998655 556677988765432 22
Q ss_pred CCcCHHHHHhhcCc---------eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 216 RSDGAVVKGRAYGV---------RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 216 ~~~~~~~~a~a~G~---------~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
...++.+++++||+ ++++|+ +.+++.++++++++. .++|+|||+.|+|
T Consensus 485 ~~~d~~~~a~a~G~~~~~~~~~~~~~~v~--~~~el~~al~~a~~~---~~gp~liev~~~~ 541 (568)
T 2wvg_A 485 KNWDYAGLMEVFNGNGGYDSGAGKGLKAK--TGGELAEAIKVALAN---TDGPTLIECFIGR 541 (568)
T ss_dssp CCCCHHHHHHHHHCTTSSSCCCCEEEEES--BHHHHHHHHHHHHHC---CSSCEEEEEECCT
T ss_pred CCCCHHHHHHHhCCCcccccCCcceEEeC--CHHHHHHHHHHHHhc---CCCcEEEEEEcCc
Confidence 34689999999999 999998 789999998888752 2799999999976
|
| >2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.8e-15 Score=156.00 Aligned_cols=116 Identities=18% Similarity=0.162 Sum_probs=95.1
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-c-cccccc--cc---
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-W-AISTPI--SD--- 213 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~-~~~~~~--~~--- 213 (380)
..|+||+++|.|+|+++| ++++|||++|||+|++. +++|++|+++++|+++||.||+ | ++.... ..
T Consensus 424 ~~g~~G~~l~~AiGaala-----~~~~vv~i~GDGsf~~~--~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~ 496 (568)
T 2c31_A 424 TWGVMGIGMGYCVAAAAV-----TGKPVIAVEGDSAFGFS--GMELETICRYNLPVTVIIMNNGGIYKGNEADPQPGVIS 496 (568)
T ss_dssp TTTCSSCHHHHHHHHHHH-----HCSCEEEEEEHHHHHTT--GGGHHHHHHTTCCEEEEEEESSBSSCSCCCCSBTTBCC
T ss_pred CCccccccHHHHHHHHhC-----CCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCchhHHHHHHHhhcCCcc
Confidence 468999999999999998 56889999999999764 5779999999999888887776 3 443211 00
Q ss_pred --ccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 016903 214 --QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 269 (380)
Q Consensus 214 --~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~ 269 (380)
.....++.+++++||+++++|+ +++++.++++++++ .++|+|||+.|.|.
T Consensus 497 ~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~~~~~ 548 (568)
T 2c31_A 497 CTRLTRGRYDMMMEAFGGKGYVAN--TPAELKAALEEAVA----SGKPCLINAMIDPD 548 (568)
T ss_dssp TTBCCCCCHHHHHHTTTCEEEEES--SHHHHHHHHHHHHH----HTSCEEEEEEBCTT
T ss_pred cCcCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeccc
Confidence 0345689999999999999998 89999999988875 47999999999874
|
| >1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 | Back alignment and structure |
|---|
Probab=99.59 E-value=8.4e-16 Score=159.30 Aligned_cols=116 Identities=19% Similarity=0.211 Sum_probs=93.6
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEE-EcCCcccccccc------c
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPIS------D 213 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv-~NN~~~~~~~~~------~ 213 (380)
..|+||+++|.|+|+++|. ++++|||++|||+++++ +++|.+|.++++|+++|| +||+|++..... .
T Consensus 406 ~~g~mG~~l~~A~G~a~a~----~~~~vv~~~GDG~~~~~--~~el~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~ 479 (552)
T 1ovm_A 406 LWGSIGYTLAAAFGAQTAC----PNRRVIVLTGDGAAQLT--IQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRYN 479 (552)
T ss_dssp TTCCTTHHHHHHHHHHHHC----TTSCEEEEEEHHHHHHH--TTHHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGGG
T ss_pred hhHhhhhHHHHHHHHHHhC----CCCcEEEEECchHHHhH--HHHHHHHHHhCCCCEEEEEECCCCeEEEeeccCCCCcc
Confidence 3689999999999999985 47899999999999864 677999999999966655 555688874321 1
Q ss_pred ccCCcCHHHHHhhcCc----eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 214 QFRSDGAVVKGRAYGV----RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 214 ~~~~~~~~~~a~a~G~----~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
.....|+.+++++||+ ++++|+ +++++.+++++++ +.++|+|||+.|.+
T Consensus 480 ~~~~~d~~~~a~a~G~~~~~~~~~v~--~~~~l~~al~~a~----~~~gp~liev~~~~ 532 (552)
T 1ovm_A 480 DIALWNWTHIPQALSLDPQSECWRVS--EAEQLADVLEKVA----HHERLSLIEVMLPK 532 (552)
T ss_dssp CCCCCCGGGSTTTSCSSCCEEEEEEC--BHHHHHHHHHHHT----TCSSEEEEEEECCT
T ss_pred cCCCCCHHHHHHHhCCCcCCCEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEcCc
Confidence 1234689999999999 999998 7888888777664 46899999999975
|
| >2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=6.2e-15 Score=153.20 Aligned_cols=117 Identities=14% Similarity=0.093 Sum_probs=94.9
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-c-cccccc---c---
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-W-AISTPI---S--- 212 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~-~~~~~~---~--- 212 (380)
..|+||+++|.|+|+++| ++++|||++|||+|++. +++|++|+++++|+++||.||+ | ++.... .
T Consensus 419 ~~g~~G~~l~~AiGaa~a-----~~~~vv~i~GDGsf~~~--~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~ 491 (564)
T 2q28_A 419 TWGVMGIGMGYAIGASVT-----SGSPVVAIEGDSAFGFS--GMEIETICRYNLPVTIVIFNNGGIYRGDGVDLSGAGAP 491 (564)
T ss_dssp TTTCTTCHHHHHHHHHHH-----HCSCEEEEEEHHHHHTT--GGGHHHHHHTTCCEEEEEEECSBSSCSCCCCTTSSCCC
T ss_pred CCCcccchHHHHHHHhhc-----CCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCchhHHHHHHHHhccCCc
Confidence 468999999999999997 57889999999999764 4679999999999888877776 3 443211 0
Q ss_pred c---ccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCC
Q 016903 213 D---QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 270 (380)
Q Consensus 213 ~---~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~ 270 (380)
. .....|+.+++++||+++++|+ +++++.++++++++ .++|+|||+.|.|..
T Consensus 492 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~~~~~~ 546 (564)
T 2q28_A 492 SPTDLLHHARYDKLMDAFRGVGYNVT--TTDELRHALTTGIQ----SRKPTIINVVIDPAA 546 (564)
T ss_dssp CTTBCCTTCCGGGGGGGGTCEEEEEC--SHHHHHHHHHHHHH----HTSCEEEEEEBCTTS
T ss_pred cccccCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecccc
Confidence 0 1124689999999999999998 88999999988875 479999999998753
|
| >2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.2e-15 Score=156.77 Aligned_cols=114 Identities=18% Similarity=0.058 Sum_probs=90.7
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEE-EcCCccccccccc-------
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPISD------- 213 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv-~NN~~~~~~~~~~------- 213 (380)
.+++|+++|.|+|+|+|. +++|||++|||+|+++ +++|++|+++++|+++|| +||+|++......
T Consensus 454 ~~~ig~~l~~AiGaala~-----~~~vv~i~GDGsf~~~--~~eL~ta~~~~lp~~ivv~NN~~~~i~~~~~~~q~~~~~ 526 (604)
T 2x7j_A 454 ANGIDGVVSSAMGVCEGT-----KAPVTLVIGDLSFYHD--LNGLLAAKKLGIPLTVILVNNDGGGIFSFLPQASEKTHF 526 (604)
T ss_dssp TCCSSSHHHHHHHHHHHH-----TSCEEEEEEHHHHHHT--GGGGHHHHHHCCCEEEEEEECSSCGGGGGSGGGSCHHHH
T ss_pred cCCcCcHHHHHHHHHhcC-----CCcEEEEEccHHHHhH--HHHHHHhhhcCCCeEEEEEeCCCCcccccCCCCccchhh
Confidence 467899999999999983 6789999999999875 466999999999977665 5557887542211
Q ss_pred -----ccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 214 -----QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 214 -----~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
.....|+.+++++||+++++|+ +++++.+++++++ +.++|+|||+.|.|
T Consensus 527 ~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~----~~~gp~liev~~~~ 580 (604)
T 2x7j_A 527 EDLFGTPTGLDFKHAAALYGGTYSCPA--SWDEFKTAYAPQA----DKPGLHLIEIKTDR 580 (604)
T ss_dssp HHHTTCCCCCCTHHHHHHTTCEEECCS--SHHHHHHHCCCCC----SSCCEEEEEEECCH
T ss_pred HhhccCCCCCCHHHHHHHcCCeEEecC--CHHHHHHHHHHHH----hCCCCEEEEEECCc
Confidence 1124689999999999999998 7888877776665 45899999999864
|
| >3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.4e-14 Score=150.36 Aligned_cols=114 Identities=18% Similarity=0.114 Sum_probs=86.0
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccc-------c
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI-------S 212 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~-------~ 212 (380)
..|++|. +|.|+|+++| ++++|||++|||+|++. .++|++|+++++|+++||.||+ |++.... .
T Consensus 415 ~~g~~G~-l~~A~Gaa~a-----~~~~vv~i~GDGsf~~~--~~eL~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~~~ 486 (556)
T 3hww_A 415 ASGIDGL-LSTAAGVQRA-----SGKPTLAIVGDLSALYD--LNALALLRQVSAPLVLIVVNNNGGQIFSLLPTPQSERE 486 (556)
T ss_dssp SCCSSSH-HHHHHHHHHH-----HCCCEEEEEEHHHHHHT--GGGHHHHTTCSSCEEEEEEESCC---------------
T ss_pred ccccccH-HHHHHHHHhc-----CCCcEEEEEccHHhhhc--chhhHhhcccCCCcEEEEEECCCCCcccCCCCcchhHH
Confidence 3456666 9999999998 36889999999999754 4569999999999888777776 5654321 1
Q ss_pred ---cccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 213 ---DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 213 ---~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
......|+.++|++||+++++|+ +.+++.+++++++ +.+||+|||+.|.|
T Consensus 487 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~----~~~gp~liev~~~~ 539 (556)
T 3hww_A 487 RFYLMPQNVHFEHAAAMFELKYHRPQ--NWQELETAFADAW----RTPTTTVIEMVVND 539 (556)
T ss_dssp --CCCCCCCCSHHHHHHTTCEEECCS--SHHHHHHHHHHHT----TSSSEEEEEEECCS
T ss_pred HhccCCCCCCHHHHHHHcCCcEEecC--CHHHHHHHHHHHH----hCCCCEEEEEECCc
Confidence 11235789999999999999998 7788877777665 46899999999854
|
| >3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.7e-14 Score=148.88 Aligned_cols=111 Identities=16% Similarity=0.065 Sum_probs=79.1
Q ss_pred cccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Cccccccc---c------c-
Q 016903 145 IATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI---S------D- 213 (380)
Q Consensus 145 lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~~~~~~---~------~- 213 (380)
+|+++|.|+|+|+ ++++|||++|||+|++. .++|++|+++++|+++||.|| +|++.... . .
T Consensus 438 ~~g~l~~AiGaa~------~~~~vv~i~GDGsf~~~--~~eL~ta~~~~l~~~ivv~NN~~~g~~~~~~~~~~~~~~~~~ 509 (578)
T 3lq1_A 438 IDGVVSSALGASV------VFQPMFLLIGDLSFYHD--MNGLLMAKKYKMNLTIVIVNNDGGGIFSFLPQANEPKYFESL 509 (578)
T ss_dssp SSSHHHHHHHHTT------TSSSEEEEEEHHHHHHT--GGGGHHHHHTTCCEEEEEECCC--------------------
T ss_pred cccHHHHHHHHhc------CCCCEEEEEchHHHHhh--HHHHHhhccCCCCeEEEEEECCcCccccccccccccchhhhh
Confidence 3446999999863 37899999999999754 467999999999988877766 57765421 0 0
Q ss_pred --ccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 016903 214 --QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 269 (380)
Q Consensus 214 --~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~ 269 (380)
.....|+.++|++||+++++|+ +.+++.++++++++ .+||+|||+.|.|.
T Consensus 510 ~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~liev~~~~~ 561 (578)
T 3lq1_A 510 FGTSTELDFRFAAAFYDADYHEAK--SVDELEEAIDKASY----HKGLDIIEVKTNRH 561 (578)
T ss_dssp -----CCCTHHHHHHTTCEEEECC--SHHHHHHHHHHHTT----SSSEEEEEEC----
T ss_pred ccCCCCCCHHHHHHHcCCceEecC--CHHHHHHHHHHHHh----CCCCEEEEEECCcc
Confidence 0123589999999999999998 88888888877764 58999999998763
|
| >2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=2.2e-09 Score=120.25 Aligned_cols=99 Identities=13% Similarity=0.111 Sum_probs=76.6
Q ss_pred CCeeEEEeCcc-ccCcchHHHHHHHHHHcCCCEEEEEEcCC-cccccccccc----------------cCCcCHHHHHhh
Q 016903 165 DACAVTYFGDG-GTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISDQ----------------FRSDGAVVKGRA 226 (380)
Q Consensus 165 ~~~vv~~~GDG-~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~~~~----------------~~~~~~~~~a~a 226 (380)
++.|||+.||| ++++|. .+|.+|.++++||++||.||+ |++...+... ....|+.++|++
T Consensus 953 ~~~Vv~i~GDG~~~~mg~--~eL~ta~~~~~~v~iiVlnN~~yg~tg~Q~s~~t~~~~~t~~~~~g~~~~~~D~~~iA~a 1030 (1231)
T 2c42_A 953 KKSVWIFGGDGWAYDIGY--GGLDHVLASGEDVNVFVMDTEVYSNTGGQSSKATPTGAVAKFAAAGKRTGKKDLARMVMT 1030 (1231)
T ss_dssp CCEEEEEEEHHHHHTTTH--HHHHHHHHTTCSCEEEEEECSSBTTTTCBCCTTSCTTCCBBTBTTCCSSCCCCHHHHHHT
T ss_pred CCcEEEEeCcHHHHHcch--HHHHHHHHhCCCeEEEEEECHHHHhHHhhhccCCCCCceeeecccCCCCCchhHHHHHHH
Confidence 47899999999 888773 469999999999888777665 5554422110 122589999999
Q ss_pred cCceEEEE-eC-CCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 016903 227 YGVRSIRV-DG-NDALAIYSAVHAAREMAIGEGRPILIEALTYRV 269 (380)
Q Consensus 227 ~G~~~~~V-dG-~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~ 269 (380)
||++++.+ .- .++.++..++++|++ .+||+||++.+.-.
T Consensus 1031 ~G~~~va~~~v~~~~~~l~~al~eAl~----~~GP~lI~v~~~c~ 1071 (1231)
T 2c42_A 1031 YGYVYVATVSMGYSKQQFLKVLKEAES----FPGPSLVIAYATCI 1071 (1231)
T ss_dssp TSSSEEEEECTTTCHHHHHHHHHHHHH----SSSCEEEEEECCCG
T ss_pred CCCCEEEEEeccCCHHHHHHHHHHHHh----cCCCEEEEEeecCc
Confidence 99999964 33 499999999999986 48999999987554
|
| >2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.095 Score=53.94 Aligned_cols=110 Identities=17% Similarity=0.115 Sum_probs=78.7
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+. +.-.+++|..|=|.++ ..-++..|..-++|||+|.-+......... ......|....++.+-
T Consensus 61 a~~A~Gyar~t---g~p~v~~~TsGpG~~N---~~~~v~~A~~~~~Pll~itg~~~~~~~~~~-~~~Q~~d~~~~~~~~~ 133 (573)
T 2iht_A 61 GVAADVLARIT---GRPQACWATLGPGMTN---LSTGIATSVLDRSPVIALAAQSESHDIFPN-DTHQCLDSVAIVAPMS 133 (573)
T ss_dssp HHHHHHHHHHH---CSCEEEEECTTHHHHH---HHHHHHHHHHHTCCEEEEEEESCGGGCCTT-TSTTCCCHHHHHGGGS
T ss_pred HHHHHHHHHHH---CCCEEEEEccCchHHH---HHHHHHHHHhhCCCEEEEcccCcccccCCc-CccccCCHHHHHHhHh
Confidence 34566766553 4445667777888776 556788888899999999987654433220 1122246778888887
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEee
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALTY 267 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~-gP~lIe~~t~ 267 (380)
-....+. +++++...+++|+..+..++ ||+.|++-..
T Consensus 134 k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 171 (573)
T 2iht_A 134 KYAVELQ--RPHEITDLVDSAVNAAMTEPVGPSFISLPVD 171 (573)
T ss_dssp SEEEECC--SGGGHHHHHHHHHHHHTBSSCCCEEEEEEHH
T ss_pred hEEEEcC--CHHHHHHHHHHHHHHHhcCCCceEEEEecch
Confidence 7777776 88889999999998888876 9999998764
|
| >1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A* | Back alignment and structure |
|---|
Probab=95.06 E-value=0.093 Score=54.20 Aligned_cols=108 Identities=19% Similarity=0.188 Sum_probs=78.4
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+. +.-.+++|..|=|+++ ..-++..|...++|||+|+-+-....... ......|....++.+-
T Consensus 63 a~~A~Gyar~t---g~p~v~~~TsGpG~~N---~~~gv~~A~~~~vPll~itg~~~~~~~g~--~~~Q~~d~~~~~~~~~ 134 (590)
T 1ybh_A 63 VFAAEGYARSS---GKPGICIATSGPGATN---LVSGLADALLDSVPLVAITGQVPRRMIGT--DAFQETPIVEVTRSIT 134 (590)
T ss_dssp HHHHHHHHHHH---SSCEEEEECTTHHHHT---THHHHHHHHHHTCCEEEEEEECCGGGTTT--TCTTCCCHHHHHGGGS
T ss_pred HHHHHHHHHHH---CCCEEEEeccCchHHH---HHHHHHHHHhhCCCEEEEeCcCCccccCC--CcccccCHHHHHHHHh
Confidence 44677777653 4456777778888886 45668888899999999987665432221 1122246778888887
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~-gP~lIe~~t 266 (380)
-...++. +++++..++++|+..++.+. ||+.|++-.
T Consensus 135 k~~~~v~--~~~~i~~~l~~A~~~a~~~~~GPV~l~iP~ 171 (590)
T 1ybh_A 135 KHNYLVM--DVEDIPRIIEEAFFLATSGRPGPVLVDVPK 171 (590)
T ss_dssp SEEEECC--CGGGHHHHHHHHHHHHHSSSCCEEEEEEEH
T ss_pred CeEEecC--CHHHHHHHHHHHHHHHhhCCCceEEEEeCc
Confidence 7777776 88899999999998888764 899998865
|
| >2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A* | Back alignment and structure |
|---|
Probab=95.05 E-value=0.11 Score=53.41 Aligned_cols=109 Identities=19% Similarity=0.110 Sum_probs=78.2
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCC-cCHHHHHhhc
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRS-DGAVVKGRAY 227 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~-~~~~~~a~a~ 227 (380)
.-+|.|.|.+. +.-.+++|..|=|+++ ..-++..|...++|||+|+-+-......... ... .|....++.+
T Consensus 54 a~~A~Gyar~t---g~p~v~~~TsGpG~~N---~~~~l~~A~~~~~Pll~itg~~~~~~~~~~~--~Q~~~d~~~~~~~~ 125 (563)
T 2uz1_A 54 GHAAEGYARAG---AKLGVALVTAGGGFTN---AVTPIANAWLDRTPVLFLTGSGALRDDETNT--LQAGIDQVAMAAPI 125 (563)
T ss_dssp HHHHHHHHHHH---TSCEEEEECTTHHHHT---THHHHHHHHHHTCCEEEEEEECCGGGTTSCC--TTCCCCHHHHHGGG
T ss_pred HHHHHHHHHHh---CCCEEEEEccCccHHH---HHHHHHHHHhcCCCEEEEeCCCCcccCCchh--hhhhccHHHHhhhh
Confidence 34567776653 4445667777888887 3456777888999999999876543322211 122 4677888888
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEee
Q 016903 228 GVRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALTY 267 (380)
Q Consensus 228 G~~~~~VdG~D~~av~~a~~~a~~~ar~~~-gP~lIe~~t~ 267 (380)
--...++. +++++...+.+|+..+..++ ||+.|++-..
T Consensus 126 tk~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~d 164 (563)
T 2uz1_A 126 TKWAHRVM--ATEHIPRLVMQAIRAALSAPRGPVLLDLPWD 164 (563)
T ss_dssp CSEEEECC--CGGGHHHHHHHHHHHHHSSSCCCEEEEEEHH
T ss_pred hceEEEcC--CHHHHHHHHHHHHHHhcCCCCceEEEEeCHH
Confidence 77778876 88889999999998888775 9999988654
|
| >1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A* | Back alignment and structure |
|---|
Probab=94.96 E-value=0.092 Score=53.99 Aligned_cols=109 Identities=15% Similarity=0.025 Sum_probs=76.7
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+. +.-.+++|..|=|.++ ..-++..|..-++|||+|+-+-......... ....|....++.+-
T Consensus 61 a~~A~Gyar~t---g~p~v~~~TsGpG~~N---~~~~l~~A~~~~vPll~itg~~~~~~~~~~~--~Q~~d~~~~~~~~t 132 (566)
T 1ozh_A 61 AFMAAAVGRIT---GKAGVALVTSGPGCSN---LITGMATANSEGDPVVALGGAVKRADKAKQV--HQSMDTVAMFSPVT 132 (566)
T ss_dssp HHHHHHHHHHH---SSCEEEEECSTHHHHT---THHHHHHHHHHTCCEEEEEEECCTTTC--------CCCHHHHHGGGC
T ss_pred HHHHHHHHHHH---CCCEEEEEccChHHHH---HHHHHHHHHhcCCCEEEEeCCCccccCCCCc--ccccCHHHHHHHHh
Confidence 34566776553 4445667777888887 4566778888899999999776543322111 12246778888887
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEee
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALTY 267 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~-gP~lIe~~t~ 267 (380)
-....+. +++++...+++|+..+..++ ||+.|++-..
T Consensus 133 k~~~~v~--~~~~~~~~i~~A~~~A~~~r~GPV~l~iP~d 170 (566)
T 1ozh_A 133 KYAIEVT--APDALAEVVSNAFRAAEQGRPGSAFVSLPQD 170 (566)
T ss_dssp SEEEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred heEEEcC--CHHHHHHHHHHHHHHHhcCCCCeEEEEeChh
Confidence 7778886 88889999999998888774 9999988654
|
| >2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A* | Back alignment and structure |
|---|
Probab=94.83 E-value=0.16 Score=52.50 Aligned_cols=108 Identities=18% Similarity=0.123 Sum_probs=76.5
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCccccccc-ccccCCcCHHHHHhhc
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPI-SDQFRSDGAVVKGRAY 227 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~-~~~~~~~~~~~~a~a~ 227 (380)
.-+|.|.|.+. +.-.+++|..|=|+++ ..-++..|..-++|||+|.-+-........ ..+ ..|... ++.+
T Consensus 56 a~~A~GyAr~t---g~p~v~~~TsGpG~~N---~~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~Q--~~d~~~-~~~~ 126 (589)
T 2pgn_A 56 AWMVNGYNYVK---DRSAAVGAWHCVGNLL---LHAAMQEARTGRIPAVHIGLNSDGRLAGRSEAAQ--QVPWQS-FTPI 126 (589)
T ss_dssp HHHHHHHHHHH---TSCCEEEEEEGGGGGG---CHHHHHHHHHTTCCEEEEEEESCGGGTTCTTCSS--CCCGGG-GTTT
T ss_pred HHHHHHHHHHH---CCCEEEEEecCchHHH---HHHHHHHHHhcCCCEEEEecCCcccccCCCCccc--ccChhh-cccc
Confidence 34567776553 4556888899999997 456688889999999999987654332221 111 224555 6666
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEee
Q 016903 228 GVRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALTY 267 (380)
Q Consensus 228 G~~~~~VdG~D~~av~~a~~~a~~~ar~~~-gP~lIe~~t~ 267 (380)
--...++. +++++...+.+|+..+..++ ||+.|++-..
T Consensus 127 tk~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 165 (589)
T 2pgn_A 127 ARSTQRVE--RLDKVGEAIHEAFRVAEGHPAGPAYVDIPFD 165 (589)
T ss_dssp SSEEEECC--SGGGHHHHHHHHHHHHTSSSCCEEEEEEETH
T ss_pred EEEEeecC--CHHHHHHHHHHHHHHHhcCCCccEEEEeCHh
Confidence 65666676 88889999999998888776 9999988653
|
| >2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus} | Back alignment and structure |
|---|
Probab=94.46 E-value=0.16 Score=52.13 Aligned_cols=110 Identities=19% Similarity=0.099 Sum_probs=74.1
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCccccccc---ccc---cCCcCHHH
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPI---SDQ---FRSDGAVV 222 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~---~~~---~~~~~~~~ 222 (380)
.-+|.|.|.+. + -.+++|..|=|+++ ..-++..|...++|||+|+-+-........ ... ....+...
T Consensus 54 a~~A~Gyar~t---g-~~v~~~TsGpG~~N---~~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~ 126 (566)
T 2vbi_A 54 GFSAEGYARSN---G-AAAAVVTFSVGAIS---AMNALGGAYAENLPVILISGAPNSNDQGTGHILHHTIGKTDYSYQLE 126 (566)
T ss_dssp HHHHHHHHHHH---S-CEEEEECTTTTHHH---HHHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCTHHHH
T ss_pred HHHHHHHHhhc---C-CeEEEEeCCCCHHH---HHHHHHHHHhhCCCEEEEECCCChHHhccCceeeeeccCcchHHHHH
Confidence 44677776653 4 45566666777776 456677788899999999987654322110 010 01125677
Q ss_pred HHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016903 223 KGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 223 ~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~ 267 (380)
.++.+--....+. +++++...+++|+..+..+.||+.|++-..
T Consensus 127 ~~~~~tk~~~~v~--~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d 169 (566)
T 2vbi_A 127 MARQVTCAAESIT--DAHSAPAKIDHVIRTALRERKPAYLDIACN 169 (566)
T ss_dssp HHHTTCSEEEEEC--SSSSHHHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred HHhhhEeEEEEeC--CHHHHHHHHHHHHHHHHhCCCCEEEEechh
Confidence 8888877777886 666677778888777777789999998653
|
| >2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A* | Back alignment and structure |
|---|
Probab=94.45 E-value=0.19 Score=51.65 Aligned_cols=110 Identities=16% Similarity=0.077 Sum_probs=76.4
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCccccccc---ccc---cCCcCHHH
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPI---SDQ---FRSDGAVV 222 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~---~~~---~~~~~~~~ 222 (380)
.-+|.|.|.+. + ..+++|..|=|+++ ..-++..|...++|||+|+-+-........ ... ....+...
T Consensus 54 a~~A~Gyar~t---g-~~v~~~TsGpG~~N---~~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~ 126 (568)
T 2wvg_A 54 GFSAEGYARAK---G-AAAAVVTYSVGALS---AFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLE 126 (568)
T ss_dssp HHHHHHHHHHH---S-CEEEEECTTTTHHH---HHHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCCHHHH
T ss_pred HHHHHHHHHhh---C-CeEEEEeCCCCHHH---HHHHHHHHhhhCCCEEEEeCCCChhHhccCcceeeeccccchHHHHH
Confidence 44677777653 4 45677777888776 456677788899999999987654322110 010 01125677
Q ss_pred HHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016903 223 KGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 223 ~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~ 267 (380)
.++.+--....+. +++++...+.+|+..+..+.||+.|++-..
T Consensus 127 ~~~~~tk~~~~v~--~~~~~~~~l~~A~~~A~~~~GPV~l~iP~d 169 (568)
T 2wvg_A 127 MAKNITAAAEAIY--TPEEAPAKIDHVIKTALREKKPVYLEIACN 169 (568)
T ss_dssp HHTTSCSCEEEEC--SGGGHHHHHHHHHHHHHHHTCCEEEEEEGG
T ss_pred HHHhhEeEEEEeC--CHHHHHHHHHHHHHHHHhCCCCEEEEechh
Confidence 8888877778887 788888888888888887889999998753
|
| >2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A* | Back alignment and structure |
|---|
Probab=94.36 E-value=0.13 Score=52.61 Aligned_cols=109 Identities=16% Similarity=0.176 Sum_probs=75.9
Q ss_pred HHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCc
Q 016903 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|.|.|.+. +...+++|..|=|+++ ..-++..|..-++|||+|.-+-...............|....++.+--
T Consensus 59 ~~A~Gyar~t---g~pgv~~~TsGpG~~N---~~~gi~~A~~~~vPll~itg~~~~~~~~~~~~~~Q~~dq~~~~~~~tk 132 (564)
T 2q28_A 59 YAAAASGFLT---QKPGICLTVSAPGFLN---GLTALANATVNGFPMIMISGSSDRAIVDLQQGDYEELDQMNAAKPYAK 132 (564)
T ss_dssp HHHHHHHHHH---SSCEEEEECSHHHHHH---HHHHHHHHHHHTCCEEEEEEECCHHHHHTTSCCTTCCCHHHHHGGGSS
T ss_pred HHHHHHHHHh---CCCEEEEEccCchHHH---HHHHHHHHHhcCCCEEEEeCCCCccccCCCCCccccccHHHHHHHhhh
Confidence 4566776553 4445677777888776 556677888899999999987654322210111222466778888877
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016903 230 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~a~~~ar~~-~gP~lIe~~t 266 (380)
....+. +++.+...+.+|+..+..+ .||+.|++-.
T Consensus 133 ~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 168 (564)
T 2q28_A 133 AAFRVN--QPQDLGIALARAIRVSVSGRPGGVYLDLPA 168 (564)
T ss_dssp EEEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEEH
T ss_pred eeeecC--CHHHHHHHHHHHHHHHhcCCCceEEEEcCH
Confidence 777776 7888888999999888874 5999998864
|
| >3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A* | Back alignment and structure |
|---|
Probab=94.35 E-value=0.15 Score=52.15 Aligned_cols=108 Identities=14% Similarity=-0.039 Sum_probs=75.7
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+. +.-.+++|..|=|+++ ..-++..|..-++|||+|.-+-....... ......|....++.+-
T Consensus 54 a~~A~GyAr~t---g~~~v~~~TsGpG~~N---~~~gi~~A~~~~vPvl~itg~~~~~~~~~--~~~Q~~d~~~~~~~~t 125 (549)
T 3eya_A 54 AFAAGAEAQLS---GELAVCAGSCGPGNLH---LINGLFDCHRNHVPVLAIAAHIPSSEIGS--GYFQETHPQELFRECS 125 (549)
T ss_dssp HHHHHHHHHHH---SSCEEEEECTTHHHHT---THHHHHHHHHTTCCEEEEEEESCGGGTTS--CCTTCCCHHHHTSTTC
T ss_pred HHHHHHHHHHh---CCCEEEEeCCCCcHhh---hHHHHHHHHhhCCCEEEEeCCCchhhcCC--CCCCccCHHHHHhhhh
Confidence 34566776553 4456677778888887 34668888899999999997654322111 1111246677777776
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
-....+. +++++...+.+|+..+....||+.|++-.
T Consensus 126 k~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP~ 161 (549)
T 3eya_A 126 HYCELVS--SPEQIPQVLAIAMRKAVLNRGVSVVVLPG 161 (549)
T ss_dssp SEEEECC--SGGGHHHHHHHHHHHHHHTTSEEEEEEEH
T ss_pred heEEEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEeCh
Confidence 6677776 78888888999988888888999999754
|
| >1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A* | Back alignment and structure |
|---|
Probab=94.24 E-value=0.17 Score=53.32 Aligned_cols=107 Identities=18% Similarity=0.159 Sum_probs=76.9
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+. +.-.+++|..|=|+++ ..-++..|..-++|||+|+-+-....... ......|....++.+-
T Consensus 133 a~aAdGyAr~t---Gkpgvv~~TsGpG~~N---~~~gia~A~~d~vPllvItG~~~~~~~g~--~a~Q~~Dq~~i~~~~t 204 (677)
T 1t9b_A 133 GHMAEGYARAS---GKPGVVLVTSGPGATN---VVTPMADAFADGIPMVVFTGQVPTSAIGT--DAFQEADVVGISRSCT 204 (677)
T ss_dssp HHHHHHHHHHH---SSCEEEEECSTHHHHT---THHHHHHHHHHTCCEEEEEEECCTTTTTS--CCTTCCCHHHHTGGGS
T ss_pred HHHHHHHHHHH---CCCEEEEECCChHHHH---HHHHHHHHHHcCCCEEEEeCCCChhhcCC--CCccccCHHHHhhhhe
Confidence 34677777653 4456777888888887 45667788888999999997654332211 1112236667777776
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEE
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEAL 265 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~-~gP~lIe~~ 265 (380)
-....|. +++++...+++|+..+..+ .||+.|++-
T Consensus 205 k~~~~v~--~~~~i~~~i~~A~~~A~~grpGPV~l~lP 240 (677)
T 1t9b_A 205 KWNVMVK--SVEELPLRINEAFEIATSGRPGPVLVDLP 240 (677)
T ss_dssp SEEEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred eEEEEcC--CHHHHHHHHHHHHHHHhhCCCceEEEEcC
Confidence 6677776 8899999999999888876 589999987
|
| >2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A* | Back alignment and structure |
|---|
Probab=94.09 E-value=0.14 Score=52.50 Aligned_cols=109 Identities=19% Similarity=0.140 Sum_probs=70.6
Q ss_pred HHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccc---cccCCcC-HHHHHh
Q 016903 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPIS---DQFRSDG-AVVKGR 225 (380)
Q Consensus 150 p~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~---~~~~~~~-~~~~a~ 225 (380)
-+|.|.|.+. +.-.+++|..|=|+++ ..-++..|..-++|||+|+-+-......... .+....+ ....++
T Consensus 73 ~~A~GyAr~t---gkp~v~~~TsGpG~~N---~~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~~~~~q~~d~q~~~~~ 146 (565)
T 2nxw_A 73 FAADAAARYS---STLGVAAVTYGAGAFN---MVNAVAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDTQFQVFK 146 (565)
T ss_dssp HHHHHHHHHH---TSCEEEEECTTHHHHT---THHHHHHHHHTTCCEEEEEEECCTTCC--CCCC-------CHHHHHHT
T ss_pred HHHHHHHHHh---CCCeEEEECCCCCHHH---HHHHHHHHHhhCCCEEEEeCCCChhhhccCcceeeeccchhhHHHHHH
Confidence 4577777653 4445666777888876 4566778888999999999774332211100 0001123 556777
Q ss_pred hcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 226 AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 226 a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
.+--....+. +++++...+.+|+..+..+.||+.|++-.
T Consensus 147 ~~~k~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP~ 185 (565)
T 2nxw_A 147 EITVAQARLD--DPAKAPAEIARVLGAARAQSRPVYLEIPR 185 (565)
T ss_dssp TSCSCEEECC--CTTTHHHHHHHHHHHHHHHTCCEEEEEEG
T ss_pred hhheEEEEeC--CHHHHHHHHHHHHHHHHhCCCCEEEECCh
Confidence 7766677776 66677777778877777678999999974
|
| >2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A* | Back alignment and structure |
|---|
Probab=94.06 E-value=0.15 Score=52.42 Aligned_cols=109 Identities=15% Similarity=0.108 Sum_probs=75.2
Q ss_pred HHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCc
Q 016903 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|.|.|.+. +...+++|..|=|+++ ..-++..|..-++|||+|.-+-...............|....++.+--
T Consensus 61 ~~A~GyAr~t---g~pgv~~~TsGpG~~N---~~~~i~~A~~~~vPll~itg~~~~~~~~~~~~~~Q~~dq~~~~~~~tk 134 (568)
T 2c31_A 61 YAASIAGYIE---GKPGVCLTVSAPGFLN---GVTSLAHATTNCFPMILLSGSSEREIVDLQQGDYEEMDQMNVARPHCK 134 (568)
T ss_dssp HHHHHHHHHH---SSCEEEEECSHHHHHH---HHHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTCCCHHHHSGGGSS
T ss_pred HHHHHHHHHh---CCCEEEEEcCCccHHH---HHHHHHHHHhcCCCEEEEccCCCccccCCCCCcccccCHHHHHHhhhh
Confidence 3566776553 4445677777888776 556788888899999999987654322210111122366677777776
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhc-cCCcEEEEEEe
Q 016903 230 RSIRVDGNDALAIYSAVHAAREMAIG-EGRPILIEALT 266 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~a~~~ar~-~~gP~lIe~~t 266 (380)
....+. +++.+...+.+|+..+.. ..||+.|++-.
T Consensus 135 ~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 170 (568)
T 2c31_A 135 ASFRIN--SIKDIPIGIARAVRTAVSGRPGGVYVDLPA 170 (568)
T ss_dssp EEEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEET
T ss_pred eeeecC--CHHHHHHHHHHHHHHhcCCCCceEEEeCCH
Confidence 777776 788888899999988887 45999998754
|
| >1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A* | Back alignment and structure |
|---|
Probab=93.93 E-value=0.14 Score=53.04 Aligned_cols=107 Identities=20% Similarity=0.060 Sum_probs=74.2
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+ .+.-.+++|..|=|.++ ..-++..|...++|+|+|+-+.......... ....|....++.+-
T Consensus 56 a~~A~GyAr~---tgk~~v~~~tsGpG~~N---~~~gl~~A~~~~vPll~Itg~~p~~~~g~~~--~Q~~d~~~~~~~~t 127 (590)
T 1v5e_A 56 AMAAVMQSKF---GGNLGVTVGSGGPGASH---LINGLYDAAMDNIPVVAILGSRPQRELNMDA--FQELNQNPMYDHIA 127 (590)
T ss_dssp HHHHHHHHHT---TCCCCEEEECTTHHHHT---THHHHHHHHHHTCCEEEEEEECCGGGTTTTC--TTCCCCHHHHHTTC
T ss_pred HHHHHHHHHH---HCCCEEEEeCcChHHHH---HHHHHHHHHhcCCCEEEEcCCCCcccCCCCc--ccccCHHHHHHhhc
Confidence 4456666654 34445667777888876 4556777888899999999876543322111 11235667777776
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~-gP~lIe~~t 266 (380)
-....+. +++++...+++|+..+..++ ||+.| +-.
T Consensus 128 k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l-iP~ 163 (590)
T 1v5e_A 128 VYNRRVA--YAEQLPKLVDEAARMAIAKRGVAVLE-VPG 163 (590)
T ss_dssp SEEEECC--SGGGHHHHHHHHHHHHHHTTSEEEEE-EET
T ss_pred cEEEEeC--CHHHHHHHHHHHHHHHhcCCCceEEE-Ecc
Confidence 6677776 88889999999998888877 89999 644
|
| >1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=93.78 E-value=0.059 Score=53.08 Aligned_cols=113 Identities=14% Similarity=0.160 Sum_probs=64.4
Q ss_pred chHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCccccc-ccccccCCcCHHHHHh-
Q 016903 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIST-PISDQFRSDGAVVKGR- 225 (380)
Q Consensus 148 ~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~-~~~~~~~~~~~~~~a~- 225 (380)
.+.+|+|+|++ ..+.++...|.|-.. ..+.|..++..++|+|+++-+....... +.....+ ..+..+..
T Consensus 76 a~~~a~Gaa~a-----G~r~~~~ts~~G~~~---~~d~l~~aa~~~~P~Vi~~~~~~~~~~g~~~~~~~s-d~~~~~~~~ 146 (395)
T 1yd7_A 76 SIAAAIGASWA-----GAKAMTATSGPGFSL---MQENIGYAVMTETPVVIVDVQRSGPSTGQPTLPAQG-DIMQAIWGT 146 (395)
T ss_dssp HHHHHHHHHHT-----TCCEEEEEETTHHHH---HTTTCC----CCCCEEEEEEC-------------------------
T ss_pred HHHHHHHHHHh-----CCcEEEEeCchHHHH---HHHHHHHHHhcCCCEEEEEeeCCCCCCCCCcccchh-HHHHHHhcc
Confidence 35667777765 245677777888764 3455666778889999988765433211 1111110 11122322
Q ss_pred --hcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCC
Q 016903 226 --AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHT 273 (380)
Q Consensus 226 --a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs 273 (380)
.+|++++... ++.+++..+..|++.+++.+.|+++....+ . +|+
T Consensus 147 ~g~~g~~vl~p~--~~qea~~l~~~A~~lA~~~~~PVi~~~~~~-l-~h~ 192 (395)
T 1yd7_A 147 HGDHSLIVLSPS--TVQEAFDFTIRAFNLSEKYRTPVILLTDAE-V-GHM 192 (395)
T ss_dssp --CCCCEEECCC--SHHHHHHHHHHHHHHHHHHTSEEEEEECHH-H-HHC
T ss_pred CCCcceEEEeCC--CHHHHHHHHHHHHHHHHHHCCCEEEEcchh-H-hCe
Confidence 2467777666 999999999999988888889999987764 2 455
|
| >4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A* | Back alignment and structure |
|---|
Probab=93.59 E-value=0.15 Score=52.74 Aligned_cols=108 Identities=15% Similarity=0.059 Sum_probs=71.1
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+. +.-.+++|..|=|+++ ..-++..|..-++|||+|+-+-....... ......|....++.+-
T Consensus 63 a~aA~GyAr~t---g~~gv~~~TsGpG~~N---~~~gia~A~~~~vPvl~itG~~~~~~~~~--~~~Q~~d~~~~~~~~t 134 (603)
T 4feg_A 63 AMAAAADAKLT---GKIGVCFGSAGPGGTH---LMNGLYDAREDHVPVLALIGQFGTTGMNM--DTFQEMNENPIYADVA 134 (603)
T ss_dssp HHHHHHHHHHH---SSCEEEEECTTHHHHT---THHHHHHHHHTTCCEEEEEEECCTTTTTS--CCTTCCCCGGGGTTTC
T ss_pred HHHHHHHHHHh---CCceEEEecCCchHHH---HHHHHHHHHHcCCCEEEEecCCcccccCC--CccccccHHHHhhhhc
Confidence 34566776553 4455677777888887 44668888899999999986543221111 1111224556666666
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
-....+. +++.+...+.+|+..+....||+.|++-.
T Consensus 135 k~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP~ 170 (603)
T 4feg_A 135 DYNVTAV--NAATLPHVIDEAIRRAYAHQGVAVVQIPV 170 (603)
T ss_dssp SEEEECC--CSTTHHHHHHHHHHHHHHHTSEEEEEEET
T ss_pred eEEEEcC--CHHHHHHHHHHHHHHHhcCCCCEEEEeCh
Confidence 6666775 66667777777777776678999998754
|
| >2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=92.45 E-value=0.23 Score=51.45 Aligned_cols=109 Identities=12% Similarity=0.008 Sum_probs=71.4
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+. +.-.+++|..|=|+++ ..-++..|..-++|||+|.-+-......... ....|....++.+-
T Consensus 82 a~aA~GyAr~t---gkpgv~~~TsGpG~~N---~~~gia~A~~~~vPlv~ItG~~~~~~~g~~~--~Q~~d~~~~~~~~t 153 (604)
T 2x7j_A 82 GFFALGLAKAK---QRPVLLICTSGTAAAN---FYPAVVEAHYSRVPIIVLTADRPHELREVGA--PQAINQHFLFGNFV 153 (604)
T ss_dssp HHHHHHHHHHH---TSCEEEEECSSHHHHT---THHHHHHHHHHTCCEEEEEEECCGGGSSSCC--TTCCCCTTTTGGGS
T ss_pred HHHHHHHHHhh---CCCEEEEECChhHHHH---HHHHHHHHhhcCCCEEEEeCCCCHHHhCCCC--CCcCcHHHHhhhhe
Confidence 34567776553 4456777777888887 4566788888999999999765443221111 11234445566665
Q ss_pred ceEEEEeCCCHHH-------HHHHHHHHHHHhhcc-CCcEEEEEEee
Q 016903 229 VRSIRVDGNDALA-------IYSAVHAAREMAIGE-GRPILIEALTY 267 (380)
Q Consensus 229 ~~~~~VdG~D~~a-------v~~a~~~a~~~ar~~-~gP~lIe~~t~ 267 (380)
-....|. ++++ +...+++|+..+..+ .||+.|++-..
T Consensus 154 k~~~~v~--~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 198 (604)
T 2x7j_A 154 KFFTDSA--LPEESPQMLRYIRTLASRAAGEAQKRPMGPVHVNVPLR 198 (604)
T ss_dssp SCEEECC--CCCCSHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEECC
T ss_pred eeeeecC--CCcccchhHHHHHHHHHHHHHHhhCCCCCcEEEEcccC
Confidence 5566665 4443 777888888877774 69999998754
|
| >2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.16 E-value=0.73 Score=47.71 Aligned_cols=109 Identities=16% Similarity=0.141 Sum_probs=75.4
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+.. ++-.++++..|=|+++ ..-++..|..-++|||+|+-+-........ .....|....++.+-
T Consensus 78 a~~A~GyAr~tg--g~~~v~~~TsGpG~~N---~~~~l~~A~~~~vPlvvItg~~p~~~~~~~--~~Q~~d~~~~~~~~t 150 (616)
T 2pan_A 78 SHMAEGYTRATA--GNIGVCLGTSGPAGTD---MITALYSASADSIPILCITGQAPRARLHKE--DFQAVDIEAIAKPVS 150 (616)
T ss_dssp HHHHHHHHHHST--TCCEEEEECSTHHHHT---SHHHHHHHHHTTCCEEEEEEECCGGGTTTT--CTTCCCHHHHHGGGS
T ss_pred HHHHHHHHHhcC--CCceEEEeCCCchHHH---HHHHHHHHHhcCCCEEEEecCCcccccCcc--cccccCHHHHHHHHH
Confidence 345667765520 2334556677888776 346677888889999999977654332211 112346778888887
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~-~gP~lIe~~t 266 (380)
-....+. ++.++...+++|+..++.+ .||+.|++-.
T Consensus 151 k~~~~v~--~~~~i~~~l~~A~~~A~~~r~GPV~l~iP~ 187 (616)
T 2pan_A 151 KMAVTVR--EAALVPRVLQQAFHLMRSGRPGPVLVDLPF 187 (616)
T ss_dssp SEEEECC--SGGGHHHHHHHHHHHHHSSSCCCEEEEEEH
T ss_pred HhhcccC--CHHHHHHHHHHHHHHHhcCCCceEEEEcch
Confidence 7777776 7888999999999888776 4899998865
|
| >3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A* | Back alignment and structure |
|---|
Probab=92.16 E-value=0.61 Score=48.56 Aligned_cols=100 Identities=17% Similarity=0.120 Sum_probs=64.5
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCccc--ccccccccCCcCHHHHHhh
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~--~~~~~~~~~~~~~~~~a~a 226 (380)
+++|+|+|+ .+..+++++.++++.. ..++.+.+++..++|+++++..-+++. .++++. +..+++-...-
T Consensus 368 v~~a~G~A~----~G~~~~~~~~f~~Fl~---~a~dqi~~~a~~~~~v~~v~~~~g~~~G~dG~tH~--~~ed~a~l~~i 438 (616)
T 3mos_A 368 VSIAVGCAT----RNRTVPFCSTFAAFFT---RAFDQIRMAAISESNINLCGSHCGVSIGEDGPSQM--ALEDLAMFRSV 438 (616)
T ss_dssp HHHHHHHHG----GGCCEEEEEEEGGGGG---GGHHHHHHHHHTTCCEEEEEESBSGGGCTTCGGGC--BSSHHHHHHTS
T ss_pred HHHHHHHHH----cCCCCEEEEehHHHHH---HHHHHHHHHHHhCCCeEEEEECCCccccCCCCccc--CHHHHHHhcCC
Confidence 344455544 3433466778998875 356778888899999999988777643 334332 33444433333
Q ss_pred cCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 016903 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (380)
Q Consensus 227 ~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe 263 (380)
-|+.++.- .|+.++..+++.|++ .++|++|.
T Consensus 439 P~l~V~~P--~d~~e~~~~l~~a~~----~~gp~~ir 469 (616)
T 3mos_A 439 PTSTVFYP--SDGVATEKAVELAAN----TKGICFIR 469 (616)
T ss_dssp TTEEEECC--CSHHHHHHHHHHHHT----CCSEEEEE
T ss_pred CCCEEEec--CCHHHHHHHHHHHHh----cCCCEEEE
Confidence 36665543 489999988888875 37898774
|
| >2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A* | Back alignment and structure |
|---|
Probab=92.14 E-value=0.44 Score=48.72 Aligned_cols=109 Identities=13% Similarity=0.048 Sum_probs=71.5
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCccccc---cccc---ccCCcCHHH
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIST---PISD---QFRSDGAVV 222 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~---~~~~---~~~~~~~~~ 222 (380)
.-+|.|.|.+. + ..+++|..|=|+++ ..-++..|..-++|||+|+-+-...... .... .....+...
T Consensus 55 a~~A~Gyar~t---g-~~v~~~TsGpG~~N---~~~gia~A~~~~~Pll~itg~~~~~~~~~~~~~~~~~g~~~~q~~~~ 127 (563)
T 2vk8_A 55 AYAADGYARIK---G-MSCIITTFGVGELS---ALNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNGDFTVFHR 127 (563)
T ss_dssp HHHHHHHHHHH---S-CEEEEEETTHHHHH---HHHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTSCSSSCSSHHHH
T ss_pred HHHHHHHHHhh---C-CcEEEEcCCCcHHH---HHHHHHHHHhhCCCEEEEECCCChHHhhcccccccccCCcchHHHHH
Confidence 34677777664 4 34677777888876 4566778888999999999765432210 0000 011124567
Q ss_pred HHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 223 KGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 223 ~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
.++.+--....+. +++++...+.+|+..+..+.||+.|++-.
T Consensus 128 ~~~~~~k~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP~ 169 (563)
T 2vk8_A 128 MSANISETTAMIT--DIATAPAEIDRCIRTTYVTQRPVYLGLPA 169 (563)
T ss_dssp HHHTTCSEEEECC--CTTTHHHHHHHHHHHHHHHTSCEEEEEET
T ss_pred HhhhhEEEEEEeC--CHHHHHHHHHHHHHHHHhCCCCEEEEech
Confidence 7777777777776 66666667777776666667999999865
|
| >1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X* | Back alignment and structure |
|---|
Probab=91.89 E-value=0.28 Score=49.82 Aligned_cols=110 Identities=20% Similarity=0.041 Sum_probs=71.0
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+. +...+++|..|=|.++ ..-++..|...++|||+|+-+-..........+. ..|....++.+-
T Consensus 51 a~~A~Gyar~t---g~~~v~~~tsGpG~~N---~~~~l~~A~~~~~Pll~itg~~~~~~~~~~~~q~-~~d~~~~~~~~~ 123 (528)
T 1q6z_A 51 VGIADGYAQAS---RKPAFINLHSAAGTGN---AMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLT-NVDAANLPRPLV 123 (528)
T ss_dssp HHHHHHHHHHH---TSCEEEEEEHHHHHHH---THHHHHHHHHTTCCEEEEEEECCHHHHTTTCTTC-CTTGGGSSTTSC
T ss_pred HHHHHHHHHHh---CCCEEEEEcCChHHHH---HHHHHHHHhhcCCCEEEEeCCCcccccCCCcccc-cccHHHHHHHhh
Confidence 44677777653 4445666777888875 3456777888999999998765432221111111 024555555554
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEee
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALTY 267 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~-gP~lIe~~t~ 267 (380)
-...++. +++++...+.+|+..+..++ ||+.|++-..
T Consensus 124 k~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d 161 (528)
T 1q6z_A 124 KWSYEPA--SAAEVPHAMSRAIHMASMAPQGPVYLSVPYD 161 (528)
T ss_dssp SCEECCS--SGGGHHHHHHHHHHHHHSSSCCCEEEEEEGG
T ss_pred HhhhcCC--CHHHHHHHHHHHHHHHhcCCCCcEEEEechh
Confidence 4455555 77778888888888777665 7999998764
|
| >2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A* | Back alignment and structure |
|---|
Probab=91.84 E-value=0.79 Score=48.15 Aligned_cols=101 Identities=11% Similarity=0.009 Sum_probs=66.2
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCccc--ccccccccCCcCHHHHHhh
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~--~~~~~~~~~~~~~~~~a~a 226 (380)
+++|.|+|+. +.-+++++.+...+. ..++++..++..++||++++...+++. .+++. .+..+++-...-
T Consensus 415 v~~a~GlA~~----gG~~P~~~tf~~F~~---~~~~~ir~~a~~~lpvv~~~t~~g~~~G~dG~tH--q~~edla~lr~i 485 (669)
T 2r8o_A 415 TAIANGISLH----GGFLPYTSTFLMFVE---YARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTH--QPVEQVASLRVT 485 (669)
T ss_dssp HHHHHHHHHH----SSCEEEEEEEGGGGG---TTHHHHHHHHHTTCCCEEEEECCSGGGCTTCTTT--CCSSHHHHHHTS
T ss_pred HHHHHHHHHc----CCCeEEEeehHHHHH---HHHHHHHHHHhcCCCEEEEEeCCCcCcCCCCCcc--CCHHHHHHhcCC
Confidence 4566676654 323455666655443 245778889999999999998877763 34444 233444443333
Q ss_pred cCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 016903 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (380)
Q Consensus 227 ~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe 263 (380)
-|+.++.- .|..++..+++.|++. .++|++|-
T Consensus 486 P~l~V~~P--ad~~E~~~~l~~a~~~---~~~Pv~i~ 517 (669)
T 2r8o_A 486 PNMSTWRP--CDQVESAVAWKYGVER---QDGPTALI 517 (669)
T ss_dssp TTCEEECC--SSHHHHHHHHHHHHHC---SSSCEEEE
T ss_pred CCCEEEec--CCHHHHHHHHHHHHHh---CCCcEEEE
Confidence 47766654 4899999999999863 37899984
|
| >2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=91.75 E-value=0.69 Score=48.45 Aligned_cols=102 Identities=15% Similarity=0.085 Sum_probs=67.2
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCccc--ccccccccCCcCHHHHHhh
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~--~~~~~~~~~~~~~~~~a~a 226 (380)
+++|.|+|+. +.-++++..+.=.+. -.++++..++..++||++++.+.+++. .+++. .+..+++-...-
T Consensus 410 ~~~a~GlA~~----Gg~~P~~~t~~~F~~---~~~~air~~a~~~lpvv~~~t~~g~g~G~dG~tH--q~~edla~lr~i 480 (651)
T 2e6k_A 410 GAILNGLNLH----GGYRAYGGTFLVFSD---YMRPAIRLAALMGVPTVFVFTHDSIALGEDGPTH--QPVEHLMSLRAM 480 (651)
T ss_dssp HHHHHHHHHH----SSCEEEEEEEGGGGG---GSHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT--CCSSHHHHHHTS
T ss_pred HHHHHHHHHc----CCCEEEEEeHHHHHH---HHHHHHHHHHhcCCCEEEEEECCccccCCCcCcc--ccHHHHHHhcCC
Confidence 4567777664 323556665533321 245778889999999999998888764 34444 234444443333
Q ss_pred cCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016903 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 227 ~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~ 264 (380)
-|+.++.-- |..++..+++.|++. .++|++|-.
T Consensus 481 P~l~V~~Pa--d~~E~~~~l~~A~~~---~~~Pv~i~~ 513 (651)
T 2e6k_A 481 PNLFVIRPA--DAYETFYAWLVALRR---KEGPTALVL 513 (651)
T ss_dssp TTCEEECCS--SHHHHHHHHHHHHHC---CSSCEEEEC
T ss_pred CCcEEEecC--CHHHHHHHHHHHHHc---CCCCEEEEE
Confidence 377766654 899999999999863 368998864
|
| >2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.67 E-value=0.38 Score=50.06 Aligned_cols=103 Identities=12% Similarity=0.062 Sum_probs=67.3
Q ss_pred chHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcc-cccccccccCCcCHHHHHhh
Q 016903 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWA-ISTPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 148 ~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~-~~~~~~~~~~~~~~~~~a~a 226 (380)
.+++|.|+|++ + -++++.++++... =.+-..++.++..++|+++++.+.++. -.+++..+ ..+++-...-
T Consensus 373 ~~~~a~G~A~~----G-~rp~~~~~~~F~~--~a~dqi~~~~a~~~~pvv~~~~~~g~~g~~G~tH~~--~~d~~~~~~i 443 (621)
T 2o1s_A 373 AVTFAAGLAIG----G-YKPIVAIYSTFLQ--RAYDQVLHDVAIQKLPVLFAIDRAGIVGADGQTHQG--AFDLSYLRCI 443 (621)
T ss_dssp HHHHHHHHHHT----T-CEEEEEEETTGGG--GGHHHHHHTTTTTTCCCEEEEESCBCCCTTCGGGCB--CSHHHHTTTS
T ss_pred HHHHHHHHHHC----C-CEEEEEehHhHHH--HHHHHHHHHHHhcCCCEEEEEECCccCCCCCCccCc--hHHHHHHhcC
Confidence 35567777664 2 4667777887653 223344677888999999999877752 23343332 2333333333
Q ss_pred cCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016903 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 227 ~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~ 264 (380)
-|+.++.-. |+.+++..++.|++. .++|++|-.
T Consensus 444 P~l~v~~P~--d~~e~~~~l~~a~~~---~~~Pv~i~~ 476 (621)
T 2o1s_A 444 PEMVIMTPS--DENECRQMLYTGYHY---NDGPSAVRY 476 (621)
T ss_dssp TTCEEECCS--SHHHHHHHHHHHHHC---CSSCEEEEC
T ss_pred CCCEEEecC--CHHHHHHHHHHHHHc---CCCCEEEEe
Confidence 378777655 999999999999863 378998854
|
| >2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A* | Back alignment and structure |
|---|
Probab=91.65 E-value=0.6 Score=47.80 Aligned_cols=109 Identities=16% Similarity=0.034 Sum_probs=71.8
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCccccccc---cc--cc-CCcCHHH
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPI---SD--QF-RSDGAVV 222 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~---~~--~~-~~~~~~~ 222 (380)
.-+|.|.|.+. + ..++++..|=|+++ ..-++..|...++|+|+|+-+......... .. .. ...+...
T Consensus 76 ~~~A~GyAr~t---G-~~v~~~tsGpG~~N---~~~gi~~A~~~~vPlv~itg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (570)
T 2vbf_A 76 SYMADGYARTK---K-AAAFLTTFGVGELS---AINGLAGSYAENLPVVEIVGSPTSKVQNDGKFVHHTLADGDFKHFMK 148 (570)
T ss_dssp HHHHHHHHHHH---S-CEEEEEETTHHHHH---HHHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCCHHHH
T ss_pred HHHHHHHHHHh---C-CeEEEEcCCCCHHH---HHHHHHHHhhhCCCEEEEeCCCCHHHhhccccceeeccccchHHHHH
Confidence 44677777653 4 45677777888775 456677888899999999977654322110 00 00 1123456
Q ss_pred HHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016903 223 KGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 223 ~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~ 267 (380)
.++.+--....+. + +++...+++|+..+..+.||+.|++...
T Consensus 149 ~~~~~tk~~~~v~--~-~~~~~~l~~A~~~A~~~~GPV~l~iP~d 190 (570)
T 2vbf_A 149 MHEPVTAARTLLT--A-ENATYEIDRVLSQLLKERKPVYINLPVD 190 (570)
T ss_dssp HTGGGCSEEEECC--T-TTHHHHHHHHHHHHHHHCCCEEEEEEHH
T ss_pred HhhhhEEEEEEEC--c-ccHHHHHHHHHHHHhhCCCCEEEEcchh
Confidence 7777777777776 4 6677777777777666779999998653
|
| >3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=91.14 E-value=0.42 Score=49.16 Aligned_cols=109 Identities=10% Similarity=0.078 Sum_probs=68.0
Q ss_pred HHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCc
Q 016903 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|.|.|.+. +.-.+++|..|=|+++ ..-++..|..-++|||+|.-+-....... ......|....++.+--
T Consensus 63 ~aAdGyAr~t---G~pgv~~~TsGpG~~N---~~~gia~A~~d~vPll~itG~~p~~~~g~--~~~Qe~d~~~~~~~~tk 134 (578)
T 3lq1_A 63 FFALGLAKAS---KRPVVLLCTSGTAAAN---YFPAVAEANLSQIPLIVLTADRPHELRNV--GAPQAMDQLHLYGSHVK 134 (578)
T ss_dssp HHHHHHHHHH---CCCEEEEECSSHHHHT---THHHHHHHHHTTCCEEEEEEECCGGGTTS--SCTTCCCCTTTTGGGSS
T ss_pred HHHHHHHHhh---CCCEEEEECCchhhhh---hhHHHHHHHhcCCCeEEEeCCCCHHhhcC--CCCCCcCHhhHHhhhee
Confidence 3567777653 4556777778999887 44668888899999999996543322111 11111244455555544
Q ss_pred eEEEEe-CCCHHH----HHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016903 230 RSIRVD-GNDALA----IYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 230 ~~~~Vd-G~D~~a----v~~a~~~a~~~ar~~-~gP~lIe~~t 266 (380)
....|. ..+..+ +..++++|+..|..+ .||+.|++-.
T Consensus 135 ~~~~v~~~~~~~~~~~~i~~~l~~A~~~A~~gr~GPV~l~iP~ 177 (578)
T 3lq1_A 135 DFTDMALPENSEEMLRYAKWHGSRAVDIAMKTPRGPVHLNFPL 177 (578)
T ss_dssp EEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEC
T ss_pred eEeecCCCCCchHHHHHHHHHHHHHHHHhhCCCCCcEEEECcc
Confidence 555554 334332 345777777777765 5999999874
|
| >1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 | Back alignment and structure |
|---|
Probab=91.00 E-value=1.1 Score=47.25 Aligned_cols=102 Identities=18% Similarity=0.103 Sum_probs=65.5
Q ss_pred hHHHHHHHHHhhhcC-CCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCccc--ccccccccCCcCHHHHHh
Q 016903 149 LPHAVGAAYALKMDR-KDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKGR 225 (380)
Q Consensus 149 lp~A~G~A~A~k~~~-~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~--~~~~~~~~~~~~~~~~a~ 225 (380)
+++|.|+|+ .+ .-++++.++...+. ..++++..++..++||++++...+++. .+++. .+..+++-...
T Consensus 427 v~~a~GlA~----~G~~~~P~~~t~~~F~~---~~~~~ir~~a~~~lpvv~~~t~~g~g~G~dG~tH--q~~edla~lr~ 497 (675)
T 1itz_A 427 GAICNGIAL----HSPGFVPYCATFFVFTD---YMRGAMRISALSEAGVIYVMTHDSIGLGEDGPTH--QPIEHLVSFRA 497 (675)
T ss_dssp HHHHHHHHT----TCTTCEEEEEEEGGGHH---HHHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT--CCSSHHHHHHS
T ss_pred HHHHHHHHh----cCCCCEEEEEEHHHHHH---HHHHHHHHHHhcCCCEEEEEECCccccCCCCCCc--CcHHHHHHhcc
Confidence 345666553 34 24566666655443 356788889999999999997776653 34444 23344443333
Q ss_pred hcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016903 226 AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 226 a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~ 264 (380)
--|+.++. -.|..++..+++.|++. .++|++|-.
T Consensus 498 iP~l~V~~--Pad~~e~~~~l~~a~~~---~~~Pv~i~~ 531 (675)
T 1itz_A 498 MPNILMLR--PADGNETAGAYKVAVLN---RKRPSILAL 531 (675)
T ss_dssp SSSCEEEC--CCSHHHHHHHHHHHHHC---TTSCEEEEE
T ss_pred CCCeEEEE--CCCHHHHHHHHHHHHHh---CCCcEEEEe
Confidence 23655554 35899999999999863 378999854
|
| >3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=90.98 E-value=1 Score=47.33 Aligned_cols=102 Identities=13% Similarity=0.052 Sum_probs=67.1
Q ss_pred chHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCccc--ccccccccCCcCHHHHHh
Q 016903 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKGR 225 (380)
Q Consensus 148 ~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~--~~~~~~~~~~~~~~~~a~ 225 (380)
.+++|.|+|+. +.-++++.++.+-.. ..++.+.+++..++||+|+....+++. .+++.. +..+++-...
T Consensus 415 ~v~~a~GlA~~----gG~~P~~~tf~~F~~---~~~~~ir~~a~~~lpvv~~~t~~g~g~G~dG~THq--~~ed~a~lr~ 485 (663)
T 3kom_A 415 MAAIMNGLSLY----GGIKPYGGTFLVFSD---YSRNAIRMSALMKQPVVHVMSHDSIGLGEDGPTHQ--PIEHVPSLRL 485 (663)
T ss_dssp HHHHHHHHHHH----SSCEEEEEEEGGGHH---HHHHHHHHHHHTTCCCEEEEECCSGGGCTTCTTTC--CSSHHHHHHT
T ss_pred HHHHHHHHHHc----CCCEEEEEehHHHHH---HHHHHHHHHHhcCCCEEEEEeCCccccCCCCCCcC--CHHHHHHHhc
Confidence 35567777764 234566666655442 245778888999999999987777653 344442 3344444433
Q ss_pred hcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 016903 226 AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (380)
Q Consensus 226 a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe 263 (380)
--|+.++.-. |..++..+++.|++. .++|++|-
T Consensus 486 iPnl~V~~Pa--d~~e~~~~l~~A~~~---~~~Pv~ir 518 (663)
T 3kom_A 486 IPNLSVWRPA--DTIETMIAWKEAVKS---KDTPSVMV 518 (663)
T ss_dssp STTCEEECCC--SHHHHHHHHHHHHHC---SSCCEEEE
T ss_pred CCCcEEEeeC--CHHHHHHHHHHHHHh---CCCCEEEE
Confidence 3366666544 889999999998862 47999884
|
| >1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B | Back alignment and structure |
|---|
Probab=90.73 E-value=0.54 Score=45.01 Aligned_cols=102 Identities=16% Similarity=0.081 Sum_probs=63.5
Q ss_pred cchHHHHHHHHHhhhcCCCCeeEEE-eCccccCcchHHHHHH-HHHH--------cCCCEEEEEEcCCcccccccccccC
Q 016903 147 TQLPHAVGAAYALKMDRKDACAVTY-FGDGGTSEGDFHAALN-FSAV--------TEAPVIFICRNNGWAISTPISDQFR 216 (380)
Q Consensus 147 ~~lp~A~G~A~A~k~~~~~~~vv~~-~GDG~~~eG~~~Eal~-~A~~--------~~Lpvi~vv~NN~~~~~~~~~~~~~ 216 (380)
..+++|.|+|++ + -++++++ ++++.. ..++.+. .++. +++|+++++.+.+ +..+++.. +
T Consensus 63 ~~~~~a~G~A~~----G-~rp~~~~t~~~F~~---~a~dqi~~~~a~~~~~~~~~~~~pvv~~~~~~g-~~~G~th~--s 131 (338)
T 1qs0_B 63 GIVGTAVGMGAY----G-LRPVVEIQFADYFY---PASDQIVSEMARLRYRSAGEFIAPLTLRMPCGG-GIYGGQTH--S 131 (338)
T ss_dssp HHHHHHHHHHHH----T-CEEEEECSCGGGCG---GGHHHHHTTTTTHHHHTTTSSCCCCEEEEEECC-SSSCCSSS--S
T ss_pred HHHHHHHHHHhC----C-CEEEEEeccHhHHH---HHHHHHHHHHHHHhhhcCCCCCCCEEEEEeCCC-CCCCcccc--c
Confidence 346677777776 2 2344433 888863 3455543 3443 3599999987654 33333332 2
Q ss_pred CcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 016903 217 SDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEAL 265 (380)
Q Consensus 217 ~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~ 265 (380)
..+++-...-.||.++.-. |+.+.+..++.|++. ++|++|-..
T Consensus 132 ~~d~~~l~~iP~l~V~~Ps--d~~e~~~~l~~A~~~----~~Pv~i~~p 174 (338)
T 1qs0_B 132 QSPEAMFTQVCGLRTVMPS--NPYDAKGLLIASIEC----DDPVIFLEP 174 (338)
T ss_dssp CCCHHHHTTSTTCEEECCC--SHHHHHHHHHHHHHS----SSCEEEEEE
T ss_pred ccHHHHHhcCCCCEEEeeC--CHHHHHHHHHHHHhc----CCcEEEEEc
Confidence 3344433333488888766 999999999999863 789998543
|
| >1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A* | Back alignment and structure |
|---|
Probab=90.61 E-value=0.9 Score=47.84 Aligned_cols=101 Identities=15% Similarity=0.094 Sum_probs=65.3
Q ss_pred hHHHHHHHHHhhhcCCCC-eeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCccc--ccccccccCCcCHHHHHh
Q 016903 149 LPHAVGAAYALKMDRKDA-CAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKGR 225 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~-~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~--~~~~~~~~~~~~~~~~a~ 225 (380)
+++|.|+|+. +.-+ +++..+..-+. ..++++..++..++||+|++...+++. .+++. .+..+++-...
T Consensus 422 vg~a~GlA~~----Gg~~~P~~~~f~~F~~---~~~~air~~a~~~lpvv~v~t~~g~g~G~dG~tH--q~~edla~lr~ 492 (680)
T 1gpu_A 422 GAIMNGISAF----GANYKPYGGTFLNFVS---YAAGAVRLSALSGHPVIWVATHDSIGVGEDGPTH--QPIETLAHFRS 492 (680)
T ss_dssp HHHHHHHHHH----CTTCEEEEEEEHHHHG---GGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT--CCSSHHHHHHT
T ss_pred HHHHHHHHhc----CCCceEEEeehHHHHH---HHHHHHHHHHhcCCCEEEEEeCCccccCCCCCcc--CCHHHHHHhcC
Confidence 4567777654 3234 55565544332 245778889999999999997777653 34544 23344444333
Q ss_pred hcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 016903 226 AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (380)
Q Consensus 226 a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe 263 (380)
--|+.++.- .|+.++..+++.|++. .++|++|-
T Consensus 493 iP~l~V~~P--ad~~e~~~~l~~A~~~---~~~Pv~i~ 525 (680)
T 1gpu_A 493 LPNIQVWRP--ADGNEVSAAYKNSLES---KHTPSIIA 525 (680)
T ss_dssp SSSCEEECC--CSHHHHHHHHHHHHHC---SSCCEEEE
T ss_pred CCCCEEEec--CCHHHHHHHHHHHHHh---CCCcEEEE
Confidence 346666554 4899999999999863 37899984
|
| >1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 | Back alignment and structure |
|---|
Probab=90.16 E-value=0.87 Score=46.35 Aligned_cols=109 Identities=17% Similarity=0.064 Sum_probs=70.2
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccc---ccc---ccCCcCHHH
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTP---ISD---QFRSDGAVV 222 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~---~~~---~~~~~~~~~ 222 (380)
.-+|.|.|.+. + ..++++..|=|.++ ..-++..|...++|+|+|+-+........ ... .....+...
T Consensus 56 ~~~A~Gyar~t---g-~~v~~~tsGpG~~N---~~~gv~~A~~~~~Pll~itg~~p~~~~~~~~~~~~~~g~~~~q~~~~ 128 (552)
T 1ovm_A 56 SYAADGYARCK---G-FAALLTTFGVGELS---AMNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFRHFYH 128 (552)
T ss_dssp HHHHHHHHHHH---S-CEEEEEETTHHHHH---THHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCSHHHH
T ss_pred HHHHHHHHHhh---C-CcEEEEccCCcHHH---HHHHHHHHhhhcCCEEEEECCCCHHHHhcccccccccCCCcHHHHHH
Confidence 44677887764 3 34677778888765 34567788899999999997654322110 000 001123556
Q ss_pred HHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016903 223 KGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 223 ~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~ 267 (380)
.++.+--....+. + ..+...+++|+..+..+.||+.|++...
T Consensus 129 ~~~~~tk~~~~v~--~-~~~~~~i~~A~~~a~~~~GPV~l~iP~d 170 (552)
T 1ovm_A 129 MSEPITVAQAVLT--E-QNACYEIDRVLTTMLRERRPGYLMLPAD 170 (552)
T ss_dssp HTGGGCSEEEECC--T-TTHHHHHHHHHHHHHHHTCCEEEEEEHH
T ss_pred HHHhheeEEEEEc--c-ccHHHHHHHHHHHHHhCCCCEEEEeehh
Confidence 7777777777776 4 5566666666666655569999998653
|
| >3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A* | Back alignment and structure |
|---|
Probab=89.96 E-value=1.2 Score=46.45 Aligned_cols=101 Identities=12% Similarity=-0.022 Sum_probs=66.9
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCccc--ccccccccCCcCHHHHHhh
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~--~~~~~~~~~~~~~~~~a~a 226 (380)
+++|.|+|+. +.-++++.++.+=+. ..++.+.+++..++||+|+....+++. .+++.. +..+++-...-
T Consensus 395 v~~a~GlA~~----gG~~P~~~~f~~F~~---~~~~~ir~~a~~~~pv~~~~t~~g~g~G~dG~THq--~~ed~a~lr~i 465 (632)
T 3l84_A 395 AAINNAFARY----GIFLPFSATFFIFSE---YLKPAARIAALMKIKHFFIFTHDSIGVGEDGPTHQ--PIEQLSTFRAM 465 (632)
T ss_dssp HHHHHHHHHH----SSCEEEEEEEGGGHH---HHHHHHHHHHHHTCCCEEEEECCSGGGCTTCGGGS--CSSHHHHHHHS
T ss_pred HHHHHHHHHc----CCCEEEEEecHHHHH---HHHHHHHHHhccCCCEEEEEECCCcCCCCCCCCCC--CHhHHHHHhcC
Confidence 4567777764 233556666554332 356778888999999999998777653 445442 33444444333
Q ss_pred cCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016903 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 227 ~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~ 264 (380)
-|+.++.-- |..++..+++.|++ .++|++|-.
T Consensus 466 P~l~V~~P~--d~~e~~~~l~~A~~----~~~Pv~ir~ 497 (632)
T 3l84_A 466 PNFLTFRPA--DGVENVKAWQIALN----ADIPSAFVL 497 (632)
T ss_dssp SSCEEECCS--SHHHHHHHHHHHHH----CSSCEEEEC
T ss_pred CCCEEEecC--CHHHHHHHHHHHHh----CCCCEEEEE
Confidence 477776644 88999999999986 479998853
|
| >1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 | Back alignment and structure |
|---|
Probab=89.49 E-value=1.7 Score=45.73 Aligned_cols=102 Identities=13% Similarity=0.020 Sum_probs=65.2
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCccc--ccccccccCCcCHHHHHhh
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~--~~~~~~~~~~~~~~~~a~a 226 (380)
+++|.|+|+. +.-++++.++..-+. -.++++..++..++|+++++...+++. .+++. .+..+++-...-
T Consensus 415 ~~~a~GlA~~----GG~~P~~~~~~~F~~---~~~~~ir~~a~~~~pvv~~~t~~g~g~G~dG~tH--q~~edla~lr~i 485 (673)
T 1r9j_A 415 CAILNGLDAH----DGIIPFGGTFLNFIG---YALGAVRLAAISHHRVIYVATHDSIGVGEDGPTH--QPVELVAALRAM 485 (673)
T ss_dssp HHHHHHHHHH----SSCEEEEEEEGGGGG---GGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT--CCSSHHHHHHHS
T ss_pred HHHHHHHHhc----CCCEEEEEehHHHHH---HHHHHHHHHHhcCCCEEEEEECCccCcCCCCccc--CCHHHHHHHcCC
Confidence 3466676654 323456666543332 345678889999999999987777653 34444 233444443333
Q ss_pred cCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016903 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 227 ~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~ 264 (380)
-|+.++.- .|..++..+++.|++. .++|++|-.
T Consensus 486 P~l~V~~P--ad~~e~~~~l~~a~~~---~~~Pv~i~~ 518 (673)
T 1r9j_A 486 PNLQVIRP--SDQTETSGAWAVALSS---IHTPTVLCL 518 (673)
T ss_dssp TTCEEECC--SSHHHHHHHHHHHHHC---TTCCEEEEC
T ss_pred CCCEEEeC--CCHHHHHHHHHHHHHh---CCCeEEEEE
Confidence 47666553 4899999999999863 378998853
|
| >3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A* | Back alignment and structure |
|---|
Probab=88.73 E-value=1.9 Score=45.47 Aligned_cols=101 Identities=17% Similarity=0.103 Sum_probs=63.9
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcc--cccccccccCCcCHHHHHhh
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWA--ISTPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~--~~~~~~~~~~~~~~~~~a~a 226 (380)
+++|.|+|+. +.-++++..+.-=+. ....++.+++..++||+|++...+++ ..+++.. +..+++-...-
T Consensus 440 v~~A~GlA~~----gG~~P~~~tf~~Fs~---f~~~air~~al~~lpVv~v~~~~gigvG~dG~THq--~ied~a~lr~i 510 (690)
T 3m49_A 440 GAAMNGIALH----GGLKTYGGTFFVFSD---YLRPAIRLAALMQLPVTYVFTHDSIAVGEDGPTHE--PIEQLAALRAM 510 (690)
T ss_dssp HHHHHHHHHH----SSCEEEEEEEGGGGG---GGHHHHHHHHHHTCCCEEEEECCSGGGCTTCGGGC--CSSHHHHHHTS
T ss_pred HHHHHHHHHc----CCCEEEEEecHHHHH---HHHHHHHHHHhcCCCcEEEEECCCcCCCCCCCccC--CHHHHHHHhcC
Confidence 4567777764 223455544422221 12345778899999999999988764 3455543 33444443333
Q ss_pred cCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 016903 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (380)
Q Consensus 227 ~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe 263 (380)
-|+.++.-- |..++..+++.|++. .++|++|-
T Consensus 511 Pnl~V~~Pa--d~~E~~~~l~~Ai~~---~~~Pv~ir 542 (690)
T 3m49_A 511 PNVSVIRPA--DGNESVAAWRLALES---TNKPTALV 542 (690)
T ss_dssp TTCEEECCS--SHHHHHHHHHHHHHC---SSSCEEEE
T ss_pred CCCEEEeeC--CHHHHHHHHHHHHHc---CCCCEEEE
Confidence 477766544 899999999999863 46899884
|
| >2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=88.37 E-value=0.71 Score=48.09 Aligned_cols=102 Identities=17% Similarity=0.103 Sum_probs=65.3
Q ss_pred chHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcc-cccccccccCCcCHHHHHhh
Q 016903 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWA-ISTPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 148 ~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~-~~~~~~~~~~~~~~~~~a~a 226 (380)
.+++|+|+|++ + -++++.++.+... =.+-..++.++..++||++++.+.++. -.+++... ..+++-...-
T Consensus 376 ~~~~a~G~A~~----G-~rp~~~~~~~F~~--~a~dqi~~~~a~~~~pvv~~~~~~g~~g~dG~tH~~--~~d~a~~r~i 446 (629)
T 2o1x_A 376 AVTTAAGMALQ----G-MRPVVAIYSTFLQ--RAYDQVLHDVAIEHLNVTFCIDRAGIVGADGATHNG--VFDLSFLRSI 446 (629)
T ss_dssp HHHHHHHHHHT----T-CEEEEEEEHHHHG--GGHHHHHHTTTTTTCCCEEEEESBBCCCTTCTTTCB--CSHHHHTTTS
T ss_pred HHHHHHHHHHc----C-CEEEEEecHHHHH--HHHHHHHHHHhhcCCCEEEEEECCccCCCCCcccCc--cHHHHHHHcc
Confidence 34566777664 2 4566777776542 223344677889999999999877652 22343322 2333333232
Q ss_pred cCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016903 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 227 ~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~ 264 (380)
-|+.++.-. |+.+++..++.|++. ++|++|-.
T Consensus 447 P~l~v~~P~--d~~e~~~~~~~a~~~----~~Pv~i~~ 478 (629)
T 2o1x_A 447 PGVRIGLPK--DAAELRGMLKYAQTH----DGPFAIRY 478 (629)
T ss_dssp TTCEEECCS--SHHHHHHHHHHHHHS----SSCEEEEC
T ss_pred CCcEEEecC--CHHHHHHHHHHHHhC----CCCEEEEe
Confidence 477777655 999999999999974 68998854
|
| >2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B | Back alignment and structure |
|---|
Probab=88.25 E-value=1.4 Score=42.18 Aligned_cols=99 Identities=16% Similarity=0.037 Sum_probs=61.2
Q ss_pred chHHHHHHHHHhhhcCCCCeeEE-EeCccccCcchHHHHHHH-HH--------HcCCCEEEEEEcCCc-ccccccccccC
Q 016903 148 QLPHAVGAAYALKMDRKDACAVT-YFGDGGTSEGDFHAALNF-SA--------VTEAPVIFICRNNGW-AISTPISDQFR 216 (380)
Q Consensus 148 ~lp~A~G~A~A~k~~~~~~~vv~-~~GDG~~~eG~~~Eal~~-A~--------~~~Lpvi~vv~NN~~-~~~~~~~~~~~ 216 (380)
.+++|.|+|++ + -++++. .+++... ..++.+.. ++ ..++||++++.+ ++ +-.+++..+ +
T Consensus 74 ~v~~a~G~A~~----G-~rp~~~~~f~~F~~---~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~-G~~g~~G~tHs~-~ 143 (341)
T 2ozl_B 74 FAGIAVGAAMA----G-LRPICEFMTFNFSM---QAIDQVINSAAKTYYMSGGLQPVPIVFRGPN-GASAGVAAQHSQ-C 143 (341)
T ss_dssp HHHHHHHHHHT----T-CEEEEECSSGGGGG---GGHHHHHTTTTTHHHHTTSSCCCCCEEEEEC-SCCSSCCGGGCC-C
T ss_pred HHHHHHHHHHC----C-CEEEEEeccHHHHH---HHHHHHHHHHHHHHhhccccCCCCEEEEEcC-cCCCCCCcchhh-H
Confidence 35667777764 2 344444 3888873 24455554 33 278999999986 43 223344422 1
Q ss_pred CcCHHHHHhhc-CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 016903 217 SDGAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEAL 265 (380)
Q Consensus 217 ~~~~~~~a~a~-G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~ 265 (380)
. + ...... ||.++.-. |+.+.+..++.|++. ++|++|-..
T Consensus 144 ~-e--a~l~~iP~l~V~~Ps--d~~e~~~~l~~a~~~----~~Pv~i~~~ 184 (341)
T 2ozl_B 144 F-A--AWYGHCPGLKVVSPW--NSEDAKGLIKSAIRD----NNPVVVLEN 184 (341)
T ss_dssp C-H--HHHHTSTTCEEECCC--SHHHHHHHHHHHHHS----SSCEEEEEC
T ss_pred H-H--HHhccCCCCEEEEeC--CHHHHHHHHHHHHhc----CCCEEEEEC
Confidence 1 2 233333 77777655 999999999998863 689988653
|
| >1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B* | Back alignment and structure |
|---|
Probab=85.87 E-value=1.5 Score=41.69 Aligned_cols=100 Identities=12% Similarity=0.001 Sum_probs=59.8
Q ss_pred cchHHHHHHHHHhhhcCCCCeeEEE-eCccccCcchHHHHHHH-HHH--------cCCCEEEEEEcCCcccccccccccC
Q 016903 147 TQLPHAVGAAYALKMDRKDACAVTY-FGDGGTSEGDFHAALNF-SAV--------TEAPVIFICRNNGWAISTPISDQFR 216 (380)
Q Consensus 147 ~~lp~A~G~A~A~k~~~~~~~vv~~-~GDG~~~eG~~~Eal~~-A~~--------~~Lpvi~vv~NN~~~~~~~~~~~~~ 216 (380)
..+++|.|+|++ + -++++++ ++++.. ..++.+.. ++. .++|+|+++. .++....... ++
T Consensus 61 ~~v~~a~G~A~~----G-~rp~~~~t~~~F~~---~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~g~~~~~g~~--hs 129 (324)
T 1w85_B 61 GIGGLAIGLALQ----G-FRPVPEIQFFGFVY---EVMDSICGQMARIRYRTGGRYHMPITIRSP-FGGGVHTPEL--HS 129 (324)
T ss_dssp HHHHHHHHHHHT----T-CEEEEBCSSGGGGG---GTHHHHHTTGGGHHHHTTTSSCCCCEEEEE-ECSSSCCCTT--SS
T ss_pred HHHHHHHHHHhC----C-CEEEEEecchhHHH---HHHHHHHHHHHHHhhhccCCCcCCEEEEEe-ccCCCCCCCc--cc
Confidence 345667777764 2 2344433 888763 24555542 443 6899999987 3443322222 22
Q ss_pred CcCHHHHHhhc-CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016903 217 SDGAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 217 ~~~~~~~a~a~-G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~ 264 (380)
..+. ...++. ||.++.-. |+.+.+..++.|++ .++|++|-.
T Consensus 130 ~~~~-a~~~~iP~l~V~~Ps--d~~e~~~~l~~a~~----~~~Pv~i~~ 171 (324)
T 1w85_B 130 DSLE-GLVAQQPGLKVVIPS--TPYDAKGLLISAIR----DNDPVIFLE 171 (324)
T ss_dssp CCCH-HHHTTSTTCEEECCS--SHHHHHHHHHHHHH----SSSCEEEEE
T ss_pred ccHH-HHHccCCCCEEEeeC--CHHHHHHHHHHHHH----cCCCEEEEe
Confidence 2334 334443 66666544 99999999999985 478998853
|
| >3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A* | Back alignment and structure |
|---|
Probab=84.89 E-value=3.6 Score=43.45 Aligned_cols=100 Identities=15% Similarity=0.061 Sum_probs=64.4
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcc--cccccccccCCcCHHHHHhh
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWA--ISTPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~--~~~~~~~~~~~~~~~~~a~a 226 (380)
+++|.|+|+. +.-++++.++. .|.+ .....+.+++..++||+|+....+++ ..+++.. +..+++-...-
T Consensus 461 v~~AaGlA~~----~G~~Pv~~~f~--~F~~-~~~~~ir~~a~~~lpv~~v~thdg~gvG~dG~THq--~~ed~a~lr~i 531 (711)
T 3uk1_A 461 SAAINGLVLH----GGYKPFGGTFL--TFSD-YSRNALRVAALMKVPSIFVFTHDSIGLGEDGPTHQ--SVEHVASLRLI 531 (711)
T ss_dssp HHHHHHHHHH----SSCEEEEEEEG--GGHH-HHHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTC--CSSHHHHHHTS
T ss_pred HHHHHHHHHc----CCCEEEEEEhH--HHHH-HHHHHHHHhhhcCCCEEEEEECCCcCcCCCCCccC--ChhHHHHHhcC
Confidence 5567777763 12345555543 3332 24567778889999999999877764 3445442 33444433333
Q ss_pred cCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 016903 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (380)
Q Consensus 227 ~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe 263 (380)
-|+.++.-- |..++..+++.|++ .++|++|-
T Consensus 532 Pnl~V~~Pa--d~~E~~~~l~~Ai~----~~~Pv~ir 562 (711)
T 3uk1_A 532 PNLDVWRPA--DTVETAVAWTYAVA----HQHPSCLI 562 (711)
T ss_dssp TTCEEECCS--SHHHHHHHHHHHHH----SSSCEEEE
T ss_pred CCCEEEecC--CHHHHHHHHHHHHh----cCCCEEEE
Confidence 377666544 88999999999986 47999884
|
| >3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A* | Back alignment and structure |
|---|
Probab=84.72 E-value=1.7 Score=44.37 Aligned_cols=107 Identities=14% Similarity=0.026 Sum_probs=66.9
Q ss_pred HHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCc
Q 016903 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|.|.|.+. +.-.+++|..|=|+++ ..-++..|..-++|||+|.-+-..........+ ..|....++.+--
T Consensus 60 ~~AdGyAr~t---G~pgv~~~TsGpG~~N---~~~gia~A~~d~vPll~itG~~~~~~~g~~~~Q--~~d~~~~~~~~tk 131 (556)
T 3hww_A 60 HLALGLAKVS---KQPVAVIVTSGTAVAN---LYPALIEAGLTGEKLILLTADRPPELIDCGANQ--AIRQPGMFASHPT 131 (556)
T ss_dssp HHHHHHHHHH---CSCEEEEECSSHHHHT---THHHHHHHHHHCCCEEEEEEECCGGGSSSSCTT--CCCCTTTTTTCSS
T ss_pred HHHHHHHHhh---CCCEEEEECCCcHHHh---hhHHHHHHHHhCCCeEEEeCCCCHHHhccCCCc--cccHHHHHhhhee
Confidence 4566776553 4556777788999887 446688888999999999976543322111111 1244455555544
Q ss_pred eEEEEe-CC---CHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 230 RSIRVD-GN---DALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 230 ~~~~Vd-G~---D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
....+. .. ....+.+++++|+.. ...||+.|++-.
T Consensus 132 ~~~~v~~~~~~~~~~~i~~~i~~A~~~--~r~GPV~i~iP~ 170 (556)
T 3hww_A 132 HSISLPRPTQDIPARWLVSTIDHALGT--LHAGGVHINCPF 170 (556)
T ss_dssp EEEECCCCCTTSCHHHHHHHHHHHHHS--CCSSCEEEEEEC
T ss_pred EEEecCCCcccccHHHHHHHHHHHHhc--CCCCCEEEeCCc
Confidence 455554 21 134578888888832 235899999874
|
| >3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=84.55 E-value=4.1 Score=42.97 Aligned_cols=101 Identities=12% Similarity=0.053 Sum_probs=63.1
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcc--cccccccccCCcCHHHHHhh
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWA--ISTPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~--~~~~~~~~~~~~~~~~~a~a 226 (380)
+++|.|+|+. +.-++++..+.. |.. ....++.+++..++||+|+....+++ .+++++ .+..+++-...-
T Consensus 445 v~~A~GlA~~----gG~~Pv~~tF~~--F~d-~~~~~ir~~al~~lpvv~v~thdg~gvG~dG~TH--q~ied~a~lr~i 515 (700)
T 3rim_A 445 GAILSGIVLH----GPTRAYGGTFLQ--FSD-YMRPAVRLAALMDIDTIYVWTHDSIGLGEDGPTH--QPIEHLSALRAI 515 (700)
T ss_dssp HHHHHHHHHH----SSCEEEEEEEGG--GGG-GGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT--SCSSHHHHHHTS
T ss_pred HHHHHHHHHc----CCCEEEEEecHH--HHH-HHHHHHHHhcCCCCCEEEEEeCCCcccCCCCCcc--CChhHHHHHhcC
Confidence 4566777765 223444443322 111 12345778899999999999877764 345544 234455544444
Q ss_pred cCceEEEEeCCCHHHHHHHHHHHHHHhhccC--CcEEEE
Q 016903 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEG--RPILIE 263 (380)
Q Consensus 227 ~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~--gP~lIe 263 (380)
-|+.++.-- |..++..+++.|++. .+ +|++|-
T Consensus 516 Pnl~V~~Pa--d~~e~~~~l~~Ai~~---~~~~~Pv~ir 549 (700)
T 3rim_A 516 PRLSVVRPA--DANETAYAWRTILAR---RNGSGPVGLI 549 (700)
T ss_dssp TTCEEECCS--SHHHHHHHHHHHHTT---TTCSSCEEEE
T ss_pred CCCEEEeCC--CHHHHHHHHHHHHHc---cCCCCCEEEE
Confidence 477766644 889999999999864 44 799985
|
| >1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2 | Back alignment and structure |
|---|
Probab=84.13 E-value=3.5 Score=39.95 Aligned_cols=99 Identities=15% Similarity=-0.029 Sum_probs=55.4
Q ss_pred chHHHHHHHHHhhhcCCCCeeEEE-eCccccCcchHHHHHHH-HHHc--------CCCEEEEEEcCCcccccccccccCC
Q 016903 148 QLPHAVGAAYALKMDRKDACAVTY-FGDGGTSEGDFHAALNF-SAVT--------EAPVIFICRNNGWAISTPISDQFRS 217 (380)
Q Consensus 148 ~lp~A~G~A~A~k~~~~~~~vv~~-~GDG~~~eG~~~Eal~~-A~~~--------~Lpvi~vv~NN~~~~~~~~~~~~~~ 217 (380)
.+++|.|+|++ + -++++.+ ++|... ..++.+.. ++.. ++||++++.+.+..-..++.. .
T Consensus 110 ~v~~a~G~A~~----G-~rpv~~~tf~~Fl~---~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg~~g~g~~hs---~ 178 (369)
T 1ik6_A 110 ILGFAMGMAMA----G-LKPVAEIQFVDFIW---LGADELLNHIAKLRYRSGGNYKAPLVVRTPVGSGTRGGLYHS---N 178 (369)
T ss_dssp HHHHHHHHHHT----T-CEEEEECCCC-------CCHHHHHHHHHHHHC------CCCCEEEEEECC-------------
T ss_pred HHHHHHHHHHC----C-CeeEEEecchhHHH---HHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCCCCCCcccc---c
Confidence 35567777664 2 3444544 888763 23444433 4543 999999998766332222221 1
Q ss_pred cCHHHHHhhc-CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016903 218 DGAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 218 ~~~~~~a~a~-G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~ 264 (380)
.+ ....++. ||.++.-. |+.+.+..++.|++ .++|++|-.
T Consensus 179 ~~-~a~l~~iPnl~V~~Ps--d~~e~~~ll~~A~~----~~~Pv~i~~ 219 (369)
T 1ik6_A 179 SP-EAIFVHTPGLVVVMPS--TPYNAKGLLKAAIR----GDDPVVFLE 219 (369)
T ss_dssp -H-HHHHHTCTTCEEECCC--SHHHHHHHHHHHHH----SSSCEEEEE
T ss_pred cH-HHHHcCCCCcEEEecC--CHHHHHHHHHHHHh----CCCCEEEEE
Confidence 22 2334443 77777655 99999999999886 478998853
|
| >1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B* | Back alignment and structure |
|---|
Probab=83.54 E-value=6.4 Score=37.13 Aligned_cols=98 Identities=15% Similarity=0.079 Sum_probs=60.5
Q ss_pred chHHHHHHHHHhhhcCCCCeeEEE-eCccccCcchHHHHHHH-HHH--------cCCCEEEEEEcCCcccccccccccCC
Q 016903 148 QLPHAVGAAYALKMDRKDACAVTY-FGDGGTSEGDFHAALNF-SAV--------TEAPVIFICRNNGWAISTPISDQFRS 217 (380)
Q Consensus 148 ~lp~A~G~A~A~k~~~~~~~vv~~-~GDG~~~eG~~~Eal~~-A~~--------~~Lpvi~vv~NN~~~~~~~~~~~~~~ 217 (380)
.+++|.|+|++ + -++++++ +++... ..++.+.. ++. .++|+|+++.. ++........+ .
T Consensus 63 ~v~~a~G~A~~----G-~~p~~~~t~~~F~~---~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~~-g~~~~~g~~hs--~ 131 (324)
T 1umd_B 63 IVGAALGMAAH----G-LRPVAEIQFADYIF---PGFDQLVSQVAKLRYRSGGQFTAPLVVRMPS-GGGVRGGHHHS--Q 131 (324)
T ss_dssp HHHHHHHHHHH----T-CEEEEECSSGGGCG---GGHHHHHHTTTTHHHHTTTSSCCCCEEEEEE-CSSSSCGGGSS--C
T ss_pred HHHHHHHHHHC----C-CEEEEEeccHhHHH---HHHHHHHHHHHHHHhhcCCCCcCCEEEEEcC-CCCCCCCCccc--h
Confidence 35667777765 2 2444443 888762 34555533 343 68899998873 44333222222 2
Q ss_pred cCHHHHHhhc-CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 016903 218 DGAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (380)
Q Consensus 218 ~~~~~~a~a~-G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe 263 (380)
.+. ...+.+ |+.++.-. |+.+.+..++.|++ .++|++|-
T Consensus 132 ~~~-a~~~~iP~~~V~~P~--d~~e~~~~l~~a~~----~~~Pv~i~ 171 (324)
T 1umd_B 132 SPE-AHFVHTAGLKVVAVS--TPYDAKGLLKAAIR----DEDPVVFL 171 (324)
T ss_dssp CCH-HHHHTSTTCEEEECC--SHHHHHHHHHHHHH----CSSCEEEE
T ss_pred hHH-HHHhcCCCCEEEEeC--CHHHHHHHHHHHHh----cCCCEEEE
Confidence 344 444444 77777655 99999999999985 47899884
|
| >2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ... | Back alignment and structure |
|---|
Probab=80.65 E-value=4.3 Score=38.78 Aligned_cols=99 Identities=8% Similarity=-0.004 Sum_probs=60.9
Q ss_pred chHHHHHHHHHhhhcCCCCeeEE-EeCccccCcchHHHHHH-HHHHc--------CC-CEEEEEEcCCcccccccccccC
Q 016903 148 QLPHAVGAAYALKMDRKDACAVT-YFGDGGTSEGDFHAALN-FSAVT--------EA-PVIFICRNNGWAISTPISDQFR 216 (380)
Q Consensus 148 ~lp~A~G~A~A~k~~~~~~~vv~-~~GDG~~~eG~~~Eal~-~A~~~--------~L-pvi~vv~NN~~~~~~~~~~~~~ 216 (380)
.+++|.|+|++ + -++++. .++++.. ..++.+. .++.+ ++ ||++++..-+. ..+++.. +
T Consensus 79 ~v~~a~G~A~~----G-~rp~~~~tf~~F~~---~a~dqi~~~~a~~~~~~~g~~~~~pvv~~~~~~g~-~~G~th~--~ 147 (342)
T 2bfd_B 79 IVGFGIGIAVT----G-ATAIAEIQFADYIF---PAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCV-GHGALYH--S 147 (342)
T ss_dssp HHHHHHHHHHT----T-CCEEEECSSGGGCG---GGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEESCC-SSCGGGS--S
T ss_pred HHHHHHHHHHC----C-CeeEEEecchhHHH---HHHHHHHHHHHHHHhhhcCCccCCCEEEEEecCCC-CCCcchh--h
Confidence 35667777765 2 344443 4888854 3445553 44433 44 99999876442 3344332 2
Q ss_pred CcCHHHHHhhc-CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016903 217 SDGAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 217 ~~~~~~~a~a~-G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~ 264 (380)
..+++-. ++. ||.++.-. |+.+.+..++.|+++ ++|++|-.
T Consensus 148 ~~d~~~l-~~iP~l~V~~Ps--d~~e~~~~l~~a~~~----~~Pv~i~~ 189 (342)
T 2bfd_B 148 QSPEAFF-AHCPGIKVVIPR--SPFQAKGLLLSCIED----KNPCIFFE 189 (342)
T ss_dssp CCCHHHH-HTSTTCEEECCS--SHHHHHHHHHHHHHS----SSCEEEEE
T ss_pred HhHHHHH-hcCCCcEEEeeC--CHHHHHHHHHHHHhc----CCcEEEEe
Confidence 3445433 344 77777655 999999999999863 78999844
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 380 | ||||
| d2bfda1 | 395 | c.36.1.11 (A:6-400) Branched-chain alpha-keto acid | 2e-94 | |
| d1w85a_ | 365 | c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, Pd | 1e-80 | |
| d1qs0a_ | 407 | c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B | 4e-76 | |
| d1umda_ | 362 | c.36.1.11 (A:) Branched-chain alpha-keto acid dehy | 1e-72 | |
| d2ozla1 | 361 | c.36.1.11 (A:1-361) E1-beta subunit of pyruvate de | 3e-69 |
| >d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid dehydrogenase, PP module {Human (Homo sapiens) [TaxId: 9606]} Length = 395 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Branched-chain alpha-keto acid dehydrogenase, PP module species: Human (Homo sapiens) [TaxId: 9606]
Score = 285 bits (731), Expect = 2e-94
Identities = 177/377 (46%), Positives = 247/377 (65%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K+Y M L TMD I YE+QR
Sbjct: 15 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 74
Query: 61 QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE ++ SAAA+ N D V Q RE GVL++R + ++ F QC+GN +D
Sbjct: 75 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQAREAGVLMYRDYPLELFMAQCYGNISD 134
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 135 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 194
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
D HA NF+A E P+IF CRNNG+AISTP S+Q+R DG +G YG+ SIRVDGND
Sbjct: 195 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVF 254
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
A+Y+A AR A+ E +P LIEA+TYR+GH +TSDDS+ +R VDE+ +W P++R
Sbjct: 255 AVYNATKEARRRAVAENQPFLIEAMTYRIGHASTSDDSSAFRSVDEVNYWDKQDHPISRL 314
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
R ++ S GWW+ + E R R++++ A ++AE+ KP + LF+DVY P+ LR+Q+
Sbjct: 315 RHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQ 374
Query: 361 HSLRETIKKHPQDYPSN 377
SL ++ + + YP +
Sbjct: 375 ESLARHLQTYGEHYPLD 391
|
| >d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus stearothermophilus [TaxId: 1422]} Length = 365 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Pyruvate dehydrogenase E1-alpha, PdhA species: Bacillus stearothermophilus [TaxId: 1422]
Score = 249 bits (636), Expect = 1e-80
Identities = 124/365 (33%), Positives = 200/365 (54%), Gaps = 11/365 (3%)
Query: 6 ESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRIS 65
E E+ P +++L+++G+ + + ++S+ ++ MV + +D RQGR+
Sbjct: 11 EKVAEQFPTFQILNEEGEVVNEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLG 70
Query: 66 FYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGR 125
FY T+G+EA IAS A++ +DF++P YR+ ++W G + + G+
Sbjct: 71 FYAPTAGQEASQIASHFALEKEDFILPGYRDVPQIIWHGLPLYQAFLFSRGHFHGNQIPE 130
Query: 126 QMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAA 185
+ + I Q A G A LKM K A A+TY GDGGTS+GDF+
Sbjct: 131 GVNVLPPQ---------IIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEG 181
Query: 186 LNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSA 245
+NF+ +AP IF+ +NN +AISTP+ Q + K A G+ I+VDG D LA+Y+A
Sbjct: 182 INFAGAFKAPAIFVVQNNRFAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAA 241
Query: 246 VHAAREMAIGEGRPILIEALTYRVGHHTTSDD-STKYRPVDEIEWWRTTQDPVTRFRKWI 304
V AARE AI P LIE L +R G HT S D T+YR + W +DP+ RFRK++
Sbjct: 242 VKAARERAINGEGPTLIETLCFRYGPHTMSGDDPTRYRSKELENEWAK-KDPLVRFRKFL 300
Query: 305 ESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLR 364
E+ G W+ + E+ + +++I A+++A++ K ++DL + +++ P NL+EQ +
Sbjct: 301 EAKGLWSEEEENNVIEQAKEEIKEAIKKADETPKQKVTDLISIMFEELPFNLKEQYEIYK 360
Query: 365 ETIKK 369
E K
Sbjct: 361 EKESK 365
|
| >d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP module {Pseudomonas putida [TaxId: 303]} Length = 407 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: 2-oxoisovalerate dehydrogenase (E1B), PP module species: Pseudomonas putida [TaxId: 303]
Score = 238 bits (609), Expect = 4e-76
Identities = 126/366 (34%), Positives = 183/366 (50%), Gaps = 9/366 (2%)
Query: 5 SESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI 64
+++++ RVLD+ G + + + M+ + D+ AQRQ ++
Sbjct: 44 ADTADLSYSLVRVLDEQGDA-QGPWAEDIDPQILRQGMRAMLKTRIFDSRMVVAQRQKKM 102
Query: 65 SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKG 124
SFY+ + GEEAI A A+ D P YR+ +L+ R S+ E Q N+ D KG
Sbjct: 103 SFYMQSLGEEAIGSGQALALNRTDMCFPTYRQQSILMARDVSLVEMICQLLSNERDPLKG 162
Query: 125 RQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHA 184
RQ+PI Y + +FT+S +ATQ AVG A A + A + GDG T+E DFH
Sbjct: 163 RQLPIMYSVREAGFFTISGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHT 222
Query: 185 ALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVV-KGRAYGVRSIRVDGNDALAIY 243
AL F+ V APVI NN WAIST + +G G+ S+RVDGND +A+Y
Sbjct: 223 ALTFAHVYRAPVILNVVNNQWAISTFQAIAGGESTTFAGRGVGCGIASLRVDGNDFVAVY 282
Query: 244 SAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKW 303
+A A E A P LIE +TYR G H+TSDD +KYRP D+ + DP+ R ++
Sbjct: 283 AASRWAAERARRGLGPSLIEWVTYRAGPHSTSDDPSKYRPADDWSHFP-LGDPIARLKQH 341
Query: 304 IESNGWWNGDIESELRSSVRKQILHALQEAEK------AEKPPISDLFTDVYDVSPSNLR 357
+ G W+ + + ++ A +EAE+ P + +F DVY P +LR
Sbjct: 342 LIKIGHWSEEEHQATTAEFEAAVIAAQKEAEQYGTLANGHIPSAASMFEDVYKEMPDHLR 401
Query: 358 EQEHSL 363
Q L
Sbjct: 402 RQRQEL 407
|
| >d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid dehydrogenase, PP module {Thermus thermophilus [TaxId: 274]} Length = 362 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Branched-chain alpha-keto acid dehydrogenase, PP module species: Thermus thermophilus [TaxId: 274]
Score = 228 bits (582), Expect = 1e-72
Identities = 137/354 (38%), Positives = 202/354 (57%), Gaps = 3/354 (0%)
Query: 15 YRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEE 74
R++ ++G+ D + + ++Y DM+ + +D + R G+ SF +G E
Sbjct: 11 IRLIGEEGEWLGDFP-LDLEGEKLRRLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHE 69
Query: 75 AINIASAAAIKND-DFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGS 133
A +A A AI+ D+V P YR+ G+ L G ++E Q KAD KGRQMP H GS
Sbjct: 70 AAQVAIAHAIRPGFDWVFPYYRDHGLALALGIPLKELLGQMLATKADPNKGRQMPEHPGS 129
Query: 134 NKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTE 193
N+FTV+S IA+ +P A GAA ++K+ R AV FGDG TSEGD++A +NF+AV
Sbjct: 130 KALNFFTVASPIASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQG 189
Query: 194 APVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMA 253
AP +FI NN +AIS Q S K A+G+ VDG D LA Y V A E A
Sbjct: 190 APAVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERA 249
Query: 254 IGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGD 313
P L+E YR G H+++DD ++YRP +E+ +WR +DP+ RFR+++E+ G WN +
Sbjct: 250 RRGEGPSLVELRVYRYGPHSSADDDSRYRPKEEVAFWR-KKDPIPRFRRFLEARGLWNEE 308
Query: 314 IESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETI 367
E ++R +R ++ L+EAE+A P +F DV+ P +L QE L+E +
Sbjct: 309 WEEDVREEIRAELERGLKEAEEAGPVPPEWMFEDVFAEKPWHLLRQEALLKEEL 362
|
| >d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate dehydrogenase (PP module) {Human (Homo sapiens) [TaxId: 9606]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: E1-beta subunit of pyruvate dehydrogenase (PP module) species: Human (Homo sapiens) [TaxId: 9606]
Score = 220 bits (560), Expect = 3e-69
Identities = 97/364 (26%), Positives = 159/364 (43%), Gaps = 10/364 (2%)
Query: 3 FISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQG 62
F ++++ E C ++G P ++ +K Y M T++ M+ + +Q
Sbjct: 1 FANDATFEIKKCDLHRLEEGPPVT----TVLTREDGLKYYRMMQTVRRMELKADQLYKQK 56
Query: 63 RI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADY 121
I F G+EA + A I D ++ YR G RG S++E + G K
Sbjct: 57 IIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRAHGFTFTRGLSVREILAELTGRKGGC 116
Query: 122 GKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGD 181
KG+ +H N++ + + Q+P G A A K + KD +T +GDG ++G
Sbjct: 117 AKGKGGSMHM--YAKNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQ 174
Query: 182 FHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALA 241
A N +A+ + P IFIC NN + + T + S R + +RVDG D L
Sbjct: 175 IFEAYNMAALWKLPCIFICENNRYGMGTSVERAAASTD--YYKRGDFIPGLRVDGMDILC 232
Query: 242 IYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFR 301
+ A A PIL+E TYR H SD YR +EI+ R+ DP+ +
Sbjct: 233 VREATRFAAAYCRSGKGPILMELQTYRYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLK 292
Query: 302 KWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVY-DVSPSNLREQE 360
+ ++ + + E+ VRK+I A Q A +PP+ +L +Y P +R
Sbjct: 293 DRMVNSNLASVEELKEIDVEVRKEIEDAAQFATADPEPPLEELGYHIYSSDPPFEVRGAN 352
Query: 361 HSLR 364
++
Sbjct: 353 QWIK 356
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 380 | |||
| d2bfda1 | 395 | Branched-chain alpha-keto acid dehydrogenase, PP m | 100.0 | |
| d1qs0a_ | 407 | 2-oxoisovalerate dehydrogenase (E1B), PP module {P | 100.0 | |
| d1umda_ | 362 | Branched-chain alpha-keto acid dehydrogenase, PP m | 100.0 | |
| d1w85a_ | 365 | Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus st | 100.0 | |
| d2ozla1 | 361 | E1-beta subunit of pyruvate dehydrogenase (PP modu | 100.0 | |
| d2r8oa2 | 331 | Transketolase (TK), PP module {Escherichia coli [T | 99.95 | |
| d1r9ja2 | 336 | Transketolase (TK), PP module {Leishmania mexicana | 99.94 | |
| d1gpua1 | 335 | Transketolase (TK), PP module {Baker's yeast (Sacc | 99.94 | |
| d1itza1 | 338 | Transketolase (TK), PP module {Maize (Zea mays) [T | 99.93 | |
| d2ieaa2 | 415 | Pyruvate dehydrogenase E1 component, PP module {Es | 99.82 | |
| d2djia3 | 229 | Pyruvate oxidase {Aerococcus viridans [TaxId: 1377 | 99.78 | |
| d2ez9a3 | 228 | Pyruvate oxidase {Lactobacillus plantarum [TaxId: | 99.74 | |
| d1q6za3 | 183 | Benzoylformate decarboxylase {Pseudomonas putida [ | 99.73 | |
| d2ihta3 | 198 | Carboxyethylarginine synthase {Streptomyces clavul | 99.72 | |
| d1ybha3 | 208 | Acetohydroxyacid synthase catalytic subunit {Thale | 99.71 | |
| d1ozha3 | 192 | Catabolic acetolactate synthase {Klebsiella pneumo | 99.68 | |
| d1t9ba3 | 227 | Acetohydroxyacid synthase catalytic subunit {Baker | 99.66 | |
| d1pvda3 | 196 | Pyruvate decarboxylase {Baker's yeast (Saccharomyc | 99.66 | |
| d2ji7a3 | 183 | Oxalyl-CoA decarboxylase {Oxalobacter formigenes [ | 99.65 | |
| d1zpda3 | 204 | Pyruvate decarboxylase {Zymomonas mobilis [TaxId: | 99.65 | |
| d1ovma3 | 196 | Indole-3-pyruvate decarboxylase {Enterobacter cloa | 99.63 | |
| d2c42a2 | 447 | Pyruvate-ferredoxin oxidoreductase, PFOR, domains | 98.2 | |
| d2ji7a2 | 188 | Oxalyl-CoA decarboxylase {Oxalobacter formigenes [ | 96.51 | |
| d2djia2 | 184 | Pyruvate oxidase {Aerococcus viridans [TaxId: 1377 | 96.47 | |
| d1zpda2 | 186 | Pyruvate decarboxylase {Zymomonas mobilis [TaxId: | 96.33 | |
| d1ozha2 | 181 | Catabolic acetolactate synthase {Klebsiella pneumo | 96.27 | |
| d2ez9a2 | 174 | Pyruvate oxidase {Lactobacillus plantarum [TaxId: | 96.07 | |
| d1pvda2 | 180 | Pyruvate decarboxylase {Baker's yeast (Saccharomyc | 96.05 | |
| d1t9ba2 | 175 | Acetohydroxyacid synthase catalytic subunit {Baker | 96.03 | |
| d2ihta2 | 186 | Carboxyethylarginine synthase {Streptomyces clavul | 95.85 | |
| d1ybha2 | 195 | Acetohydroxyacid synthase catalytic subunit {Thale | 95.83 | |
| d1q6za2 | 180 | Benzoylformate decarboxylase {Pseudomonas putida [ | 95.12 | |
| d2c42a1 | 257 | Pyruvate-ferredoxin oxidoreductase, PFOR, domain I | 93.68 | |
| d2r8oa1 | 195 | Transketolase (TK), Pyr module {Escherichia coli [ | 92.1 | |
| d1r9ja1 | 190 | Transketolase (TK), Pyr module {Leishmania mexican | 91.72 | |
| d1gpua2 | 197 | Transketolase (TK), Pyr module {Baker's yeast (Sac | 91.61 | |
| d1ovma2 | 178 | Indole-3-pyruvate decarboxylase {Enterobacter cloa | 90.95 | |
| d1qs0b1 | 204 | 2-oxoisovalerate dehydrogenase (E1B), Pyr module { | 87.23 | |
| d1itza2 | 192 | Transketolase (TK), Pyr module {Maize (Zea mays) [ | 86.95 | |
| d2ozlb1 | 192 | E1-beta subunit of pyruvate dehydrogenase, Pyr mod | 85.92 | |
| d2bfdb1 | 203 | Branched-chain alpha-keto acid dehydrogenase, Pyr | 85.22 | |
| d1ik6a1 | 191 | E1-beta subunit of pyruvate dehydrogenase, Pyr mod | 80.31 |
| >d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid dehydrogenase, PP module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Branched-chain alpha-keto acid dehydrogenase, PP module species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.9e-95 Score=718.99 Aligned_cols=378 Identities=47% Similarity=0.868 Sum_probs=349.5
Q ss_pred CccccCCCCCCCCeeEEeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhhHHHHHH
Q 016903 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIAS 80 (380)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~e~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~G~Ea~~~~~ 80 (380)
++|+++......|.+||||.||+++++...+.+|+|+++++||.|+++|.||+++..++++|++++++++.||||+++|+
T Consensus 15 ~~~~~~~~~~~~p~~r~ld~~g~~~~~~~~~~ls~e~l~~~Yr~M~~~R~~e~~~~~l~~~G~i~~~~~~~GqEA~~vg~ 94 (395)
T d2bfda1 15 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGS 94 (395)
T ss_dssp CCCCCCCCSSCSCEECSBCTTSCBSCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCCCCTTCHHHHHHH
T ss_pred cccCCCccCCCCCeeEEECCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHH
Confidence 46888888888999999999999999888899999999999999999999999999999999999888999999999999
Q ss_pred HhcCCCCcEEEcccccHHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCccccCcccccchHHHHHHHHHhh
Q 016903 81 AAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALK 160 (380)
Q Consensus 81 ~~~l~~~D~v~~~yR~~~~~l~~G~~~~~~~~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k 160 (380)
+.+|+++||++++||+|+++|++|++++.+|++++|+.+|+|+|+++++|+++++.++++.++++|+++|+|+|+|+|.|
T Consensus 95 ~~al~~~D~~~~~yR~h~~~la~G~~~~~~~ael~g~~~g~~~Grggs~H~~~~~~~~~~~~~ivg~~~p~A~G~A~a~k 174 (395)
T d2bfda1 95 AAALDNTDLVFGQAREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAK 174 (395)
T ss_dssp HHTSCTTSEEECCSCCHHHHHHTTCCHHHHHHHHHTCTTCTTTTCSCSSCCCBTTTTBCCCCSSTTTHHHHHHHHHHHHH
T ss_pred HHHcCCCCeeccccchhHhhhhhhCCHHHHHHHHhhcccCccccccccccccccccccccccccccccccHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCCCHH
Q 016903 161 MDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240 (380)
Q Consensus 161 ~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~ 240 (380)
+++.+++++|++|||++++|.|||+||+|+.|+|||||||+||+|+++++...+++..++++++++||+++++|||+|+.
T Consensus 175 ~~~~~~v~v~~~GDGa~~eG~f~EalN~A~~~~lPvlfv~eNN~yaist~~~~~~~~~~i~~ra~~~gi~~~~vDG~Dv~ 254 (395)
T d2bfda1 175 RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVF 254 (395)
T ss_dssp HHTCCCCEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSSSTTGGGTGGGTCEEEEEETTCHH
T ss_pred hcCcccccccccCCCCccchhHHHHHHHHhhcCCceEEEEEecccccccccchhhcchhHHHhhhccccceeEEecCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChhhHHHHHhcCC-hHHHHHHHHHHcCCCCHHHHHHHH
Q 016903 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQD-PVTRFRKWIESNGWWNGDIESELR 319 (380)
Q Consensus 241 av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~D-Pi~~~~~~L~~~g~~t~~e~~~i~ 319 (380)
+|++++++|++++|+++||+|||+.|||++||+.+||+..||+++|++.|++ +| ||.+++++|++.|++|++++++|+
T Consensus 255 aV~~a~~~A~~~~R~g~gP~lIE~~TyR~~~Hs~~DD~~~YR~~~Ei~~w~k-~DdPi~~~~~~Li~~g~~s~ee~~~i~ 333 (395)
T d2bfda1 255 AVYNATKEARRRAVAENQPFLIEAMTYRIGHASTSDDSSAFRSVDEVNYWDK-QDHPISRLRHYLLSQGWWDEEQEKAWR 333 (395)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEEECCCCC--CC--------------------CCHHHHHHHHHTTTTCCCHHHHHHHH
T ss_pred HHHHHHHHhhhhhhccCCceEEEEeeecCCCCCCcCCcccccCHHHHHHHHh-cCCHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999984 65 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCccccccccCCCccHHHHHHHHHHHHHhCCCCCCCCCC
Q 016903 320 SSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYPSNVP 379 (380)
Q Consensus 320 ~~~~~~v~~a~~~a~~~p~p~~~~~~~~vy~~~~~~~~~~~~~l~~~~~~~p~~~~~~~~ 379 (380)
++++++|++|+++|+++|.|+++++|+|||+++|+++++|++++++.++++|+.||+++|
T Consensus 334 ~e~~~eV~~A~~~A~~~p~P~~~~l~~~VYae~p~~l~eq~~~~~~~~~~~~e~~~~~~~ 393 (395)
T d2bfda1 334 KQSRRKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYPLDHF 393 (395)
T ss_dssp HHHHHHHHHHHHHHHHSCBCCGGGGSTTSSSSCCHHHHHHHHHHHHHHHHHGGGSCGGGB
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHhhcccCCCHHHHHHHHHHHHHHHhCcccCChhhh
Confidence 999999999999999999999999999999999999999999999999999999999887
|
| >d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP module {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: 2-oxoisovalerate dehydrogenase (E1B), PP module species: Pseudomonas putida [TaxId: 303]
Probab=100.00 E-value=1.6e-90 Score=688.65 Aligned_cols=350 Identities=36% Similarity=0.554 Sum_probs=338.1
Q ss_pred CCeeEEeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhhHHHHHHHhcCCCCcEEE
Q 016903 12 IPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKNDDFVV 91 (380)
Q Consensus 12 ~~~~~~~~~~g~~~~~~~~~~~~~e~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~G~Ea~~~~~~~~l~~~D~v~ 91 (380)
.+.+||||.||++++++ .+++|+|+|+++||.|+++|.||+++..+++||+++|||+++||||+++|++.+|+++||+|
T Consensus 51 ~~~vrvld~~g~~~~~~-~~~l~~e~l~~~yr~M~~~R~~d~~~~~l~rqG~i~~~~~~~GqEA~~vg~~~aL~~~D~~f 129 (407)
T d1qs0a_ 51 YSLVRVLDEQGDAQGPW-AEDIDPQILRQGMRAMLKTRIFDSRMVVAQRQKKMSFYMQSLGEEAIGSGQALALNRTDMCF 129 (407)
T ss_dssp TSCBCCBCTTSCBCSGG-GSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCCCCTTTHHHHHHHHHHSCTTSEEE
T ss_pred cCeEEEECCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCChHHHHHHHHHhCCCCCEEE
Confidence 47899999999998875 78999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCccccCcccccchHHHHHHHHHhhhcCCCCeeEEE
Q 016903 92 PQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTY 171 (380)
Q Consensus 92 ~~yR~~~~~l~~G~~~~~~~~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~ 171 (380)
++||+|+++|++|+++.++|++++|+.+|+++|+++++|++.+..|+++.++++|+++|+|+|+|+|.|+++.+.+|+|+
T Consensus 130 ~~yR~~g~~larG~~~~~~~~e~~g~~~g~~~Gr~~~~h~~~~~~~~~~~s~~vg~q~p~AvG~A~a~k~~~~~~v~v~~ 209 (407)
T d1qs0a_ 130 PTYRQQSILMARDVSLVEMICQLLSNERDPLKGRQLPIMYSVREAGFFTISGNLATQFVQAVGWAMASAIKGDTKIASAW 209 (407)
T ss_dssp CCSSCHHHHHHTTCCHHHHHHHHHTCTTCTTTTCSCTTCCCBGGGTBCCCCSSSSHHHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred ecccCHHHHHHHHhhHHHHHHHHhhccCCCCCCCCccccccccccceeccccccccccchhhhhHHHHhhccCcceeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccC-CcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHH
Q 016903 172 FGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR-SDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAR 250 (380)
Q Consensus 172 ~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~-~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~ 250 (380)
+|||+++||.|||+||+|+.|+|||||||+||+|+++|+...+.. ..++++++++||+++++|||||+.+|++++++|+
T Consensus 210 ~GDGa~~eG~f~EalN~A~~~~lPvifv~eNN~~aist~~~~~~~~~~~~~~ra~~~Gi~~~~VDGnD~~avy~a~~~A~ 289 (407)
T d1qs0a_ 210 IGDGATAESDFHTALTFAHVYRAPVILNVVNNQWAISTFQAIAGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWAA 289 (407)
T ss_dssp EETGGGGSHHHHHHHHHHHHHTCCEEEEEEECSEETTEEGGGGTTTTCCSTHHHHHTTCEEEEEETTCHHHHHHHHHHHH
T ss_pred ccccccccchHHHHHHHHhccCcceEEEEEEecccccccchhhhccchhHHHHHHhcCcceEEeccccHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999876554 4679999999999999999999999999999999
Q ss_pred HHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChhhHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Q 016903 251 EMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHAL 330 (380)
Q Consensus 251 ~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~e~~~i~~~~~~~v~~a~ 330 (380)
+++|+++||+|||+.|||++|||++||+..||+++|++.|+ ++|||.+++++|++.|+||++++++|+++++++|++|+
T Consensus 290 e~aR~g~gP~lIE~~TyR~~gHs~sDD~~~YR~~~E~~~w~-~~DPI~rl~~~Li~~g~~se~e~~~i~~ei~~eV~~A~ 368 (407)
T d1qs0a_ 290 ERARRGLGPSLIEWVTYRAGPHSTSDDPSKYRPADDWSHFP-LGDPIARLKQHLIKIGHWSEEEHQATTAEFEAAVIAAQ 368 (407)
T ss_dssp HHHHTTSCCEEEEEECCCCSCSSTTCCGGGTSCTTHHHHCT-TCCHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCceEEEEeeecCCCCCccccccccCCHHHHHHHH-hCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999997 69999999999999999999999999999999999999
Q ss_pred HHHHh------CCCCCCCccccccccCCCccHHHHHHHH
Q 016903 331 QEAEK------AEKPPISDLFTDVYDVSPSNLREQEHSL 363 (380)
Q Consensus 331 ~~a~~------~p~p~~~~~~~~vy~~~~~~~~~~~~~l 363 (380)
++|++ +|.|+++++|+|||+++||++++|+++|
T Consensus 369 ~~Ae~~~~~~~~p~P~~~~lf~~VY~e~p~~l~eQ~~el 407 (407)
T d1qs0a_ 369 KEAEQYGTLANGHIPSAASMFEDVYKEMPDHLRRQRQEL 407 (407)
T ss_dssp HHHHTTCCSSSCCCCCSSGGGSSSSSSCCHHHHHHHHTC
T ss_pred HHHHHhhhcccCCCcCHHHHHhhhccCCCHHHHHHHHhC
Confidence 99986 5889999999999999999999999864
|
| >d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid dehydrogenase, PP module {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Branched-chain alpha-keto acid dehydrogenase, PP module species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=3e-89 Score=673.11 Aligned_cols=352 Identities=39% Similarity=0.636 Sum_probs=343.3
Q ss_pred CeeEEeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhhHHHHHHHhcCCCC-cEEE
Q 016903 13 PCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKND-DFVV 91 (380)
Q Consensus 13 ~~~~~~~~~g~~~~~~~~~~~~~e~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~G~Ea~~~~~~~~l~~~-D~v~ 91 (380)
+.+||||++|.++++. .+++|+|+|+++||.|+++|.||+++..++++|+++|+|+++||||+++|++.+|+++ |+++
T Consensus 9 ~~~r~l~~~g~~~~~~-~~~ls~e~l~~~yr~M~~~R~~ee~~~~l~~~g~~~~~~~~~GqEA~~vg~~~al~~~~D~~~ 87 (362)
T d1umda_ 9 EPIRLIGEEGEWLGDF-PLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHEAAQVAIAHAIRPGFDWVF 87 (362)
T ss_dssp SCBCCBCTTSCBCCSS-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCCCCCTTCHHHHHHHHHHSCTTTSEEE
T ss_pred CceEEECCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcceeeCCCCHHHHHHHHHHHcCCCCCeEE
Confidence 4599999999998764 7889999999999999999999999999999999999999999999999999999986 9999
Q ss_pred cccccHHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCccccCcccccchHHHHHHHHHhhhcCCCCeeEEE
Q 016903 92 PQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTY 171 (380)
Q Consensus 92 ~~yR~~~~~l~~G~~~~~~~~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~ 171 (380)
++||+|+++|++|+++.++|++++|+.+|+++|+++++|+.+++.++++.++++|+++|+|+|+|+|.|+++.+.+++|+
T Consensus 88 ~~yR~h~~~la~G~~~~~~~ae~~gk~~g~~~Grggs~H~~~~~~~~~~~~~ivg~~~p~a~G~A~a~k~~~~~~v~v~~ 167 (362)
T d1umda_ 88 PYYRDHGLALALGIPLKELLGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVPPAAGAAISMKLLRTGQVAVCT 167 (362)
T ss_dssp CCTTTHHHHHHHTCCHHHHHHHHHTBTTCTTTTCSCSSCCCBTTTTBCCCCSSTTTTHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred eccccHHHHHHHHhhHHHHHHHHhcccCCCcccccccccccccccCcccccccccccchHHHHHHHhhhcccccceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHH
Q 016903 172 FGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAARE 251 (380)
Q Consensus 172 ~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~ 251 (380)
+|||+++||.|||+||+|+.|+|||||||+||+|++++++..+++..++.+++++||+++++|||+|+.+|++++++|++
T Consensus 168 ~GDGa~~eG~f~Ealn~A~~~~lPvifv~eNN~~aist~~~~~~~~~~~~~~a~~~gi~~~~vDGnDv~~v~~a~~~Ai~ 247 (362)
T d1umda_ 168 FGDGATSEGDWYAGINFAAVQGAPAVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVE 247 (362)
T ss_dssp EETGGGGSHHHHHHHHHHHHTTCSEEEEEEECSEETTEEHHHHCSSSCSGGGGGGTTSCEEEEETTCHHHHHHHHHHHHH
T ss_pred ccCCcccCCchHHHHHHhhhccCCeeeeeeecccccccccccccccchhhhhhhhheeeeeEeccchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998888999999999999999999999999999999999
Q ss_pred HhhccCCcEEEEEEeecCCCCCCCCCCCCCCChhhHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Q 016903 252 MAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQ 331 (380)
Q Consensus 252 ~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~e~~~i~~~~~~~v~~a~~ 331 (380)
++|+++||+|||+.|||+.||+++|++..||+++|++.|+ ++|||.+++++|+++|++|++++++|+++++++|++|++
T Consensus 248 ~~R~g~gP~lIE~~tyR~~gHs~~Dd~~~YR~~~Ei~~w~-~~DPi~~~~~~L~~~g~~se~e~~~i~~ei~~~V~~a~~ 326 (362)
T d1umda_ 248 RARRGEGPSLVELRVYRYGPHSSADDDSRYRPKEEVAFWR-KKDPIPRFRRFLEARGLWNEEWEEDVREEIRAELERGLK 326 (362)
T ss_dssp HHHTTCCCEEEEEECCCCSCSSTTCCGGGTSCHHHHHHHH-TTCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCEEEEcccccccCCCccccchhhcchhhhHHHh-cCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988999999999998 599999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCCccccccccCCCccHHHHHHHHHHH
Q 016903 332 EAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRET 366 (380)
Q Consensus 332 ~a~~~p~p~~~~~~~~vy~~~~~~~~~~~~~l~~~ 366 (380)
+|+++|.|+++++++|||+++||++.+|+++|++.
T Consensus 327 ~A~~~p~P~~~~l~~~VY~~~~~~l~~q~~~~~~~ 361 (362)
T d1umda_ 327 EAEEAGPVPPEWMFEDVFAEKPWHLLRQEALLKEE 361 (362)
T ss_dssp HHHHTCBCCGGGGGTTSSSSCCHHHHHHHHHHHHH
T ss_pred HHHhCCCCCHHHHHhcccCCCChhHHHHHHHHHhh
Confidence 99999999999999999999999999999999875
|
| >d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Pyruvate dehydrogenase E1-alpha, PdhA species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=1.4e-86 Score=653.98 Aligned_cols=348 Identities=35% Similarity=0.599 Sum_probs=327.1
Q ss_pred CCCCeeEEeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhhHHHHHHHhcCCCCcE
Q 016903 10 ERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKNDDF 89 (380)
Q Consensus 10 ~~~~~~~~~~~~g~~~~~~~~~~~~~e~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~G~Ea~~~~~~~~l~~~D~ 89 (380)
+.+|++||||.||+++++...+++|+|+|+++||.|+++|.||+++..+++||+++|+|++.||||+++|++.+|+++||
T Consensus 15 ~~~~~~~~l~~~g~~~~~~~~p~ls~e~l~~~yr~M~l~R~~e~~~~~l~~qG~ig~~h~~~GqEa~~vg~~~~l~~~D~ 94 (365)
T d1w85a_ 15 EQFPTFQILNEEGEVVNEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLGFYAPTAGQEASQIASHFALEKEDF 94 (365)
T ss_dssp HTCCEECSBCTTSCBSCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSCCCCTTCHHHHHHHHHTCCTTCE
T ss_pred ccCCeEEEECCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccccCCCChHHHHHHHHHhCCCcCE
Confidence 47899999999999999988899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccccHHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCccccCcccccchHHHHHHHHHhhhcCCCCeeE
Q 016903 90 VVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAV 169 (380)
Q Consensus 90 v~~~yR~~~~~l~~G~~~~~~~~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv 169 (380)
++++||+|+++|++|+++.++|++++|+..+.+.| +..++++.++++|+++|+|+|+|+|.|+++.+++|+
T Consensus 95 i~~~yR~hg~~la~G~~~~~~~~~~~G~~~g~~~~---------~~~~~~~~~~ivG~~~p~AvG~A~a~k~~~~~~v~v 165 (365)
T d1w85a_ 95 ILPGYRDVPQIIWHGLPLYQAFLFSRGHFHGNQIP---------EGVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAI 165 (365)
T ss_dssp EECCSSCHHHHHHTTCCHHHHHHHHHTCGGGGCCC---------TTCCBCCCCCSTTHHHHHHHHHHHHHHHTTCSCCEE
T ss_pred eeecccchheeeecCCCHHHHHHhhCCCCCccCCC---------CCceeeccccccCccccchhhHHhhhhhcccCCcee
Confidence 99999999999999999999999999865433332 345677888999999999999999999999999999
Q ss_pred EEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHH
Q 016903 170 TYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAA 249 (380)
Q Consensus 170 ~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a 249 (380)
|++|||++++|.|||+||+|+.|+|||||||+||+|+++++...++...++++++.+||+++++|||+|+.+|++++++|
T Consensus 166 ~~~GDGa~~eG~f~EalN~A~~~~lPvlfv~eNN~~aist~~~~~~~~~~~~~r~~~~Gi~~~~vDG~D~~~v~~a~~~A 245 (365)
T d1w85a_ 166 TYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAA 245 (365)
T ss_dssp EEEETGGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSCSCSGGGGGGTTCCEEEEETTCHHHHHHHHHHH
T ss_pred eeccCCcccchhHHHHHHHhhhcccCceEEEEEecccccccccccccccchhhhcccccCceEEEecchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred HHHhhccCCcEEEEEEeecCCCCCCCCC-CCCCCChhhHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 016903 250 REMAIGEGRPILIEALTYRVGHHTTSDD-STKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILH 328 (380)
Q Consensus 250 ~~~ar~~~gP~lIe~~t~R~~gHs~~Dd-~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~e~~~i~~~~~~~v~~ 328 (380)
++++|+++||+|||++|||+.|||++|| +..||+++|++.|+ ++|||.+++++|+++|++|++++++|+++++++|++
T Consensus 246 ~~~~R~g~gP~lie~~tyR~~gHs~~dd~~~~YR~~eEi~~w~-~~DPI~~~~~~L~~~g~~~~~el~~i~~e~~~eV~~ 324 (365)
T d1w85a_ 246 RERAINGEGPTLIETLCFRYGPHTMSGDDPTRYRSKELENEWA-KKDPLVRFRKFLEAKGLWSEEEENNVIEQAKEEIKE 324 (365)
T ss_dssp HHHHHTTSCCEEEEEECCCSSCSCSSCC------CHHHHHHHH-TTCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCCccEEEEeecccccccCCcCCcccccCChHHHHHHH-hCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998764 78999999999998 599999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCccccccccCCCccHHHHHHHHHHHH
Q 016903 329 ALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETI 367 (380)
Q Consensus 329 a~~~a~~~p~p~~~~~~~~vy~~~~~~~~~~~~~l~~~~ 367 (380)
|+++|+++|.|+++++|++||+++||++++|++++++..
T Consensus 325 A~~~A~~sP~P~~~~l~~~Vy~e~p~~l~eq~~~~~~~~ 363 (365)
T d1w85a_ 325 AIKKADETPKQKVTDLISIMFEELPFNLKEQYEIYKEKE 363 (365)
T ss_dssp HHHHHHTSCCCCHHHHHHTSCSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCHHHHHhhhccCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999998853
|
| >d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate dehydrogenase (PP module) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: E1-beta subunit of pyruvate dehydrogenase (PP module) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.2e-81 Score=613.09 Aligned_cols=326 Identities=28% Similarity=0.434 Sum_probs=309.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccccccchhhHHHHHHHhcCCCCcEEEcccccHHHHHHcCCCH
Q 016903 29 SFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSM 107 (380)
Q Consensus 29 ~~~~~~~e~l~~~y~~M~~~R~~e~~~~~~~~~g~i-~~~~~~~G~Ea~~~~~~~~l~~~D~v~~~yR~~~~~l~~G~~~ 107 (380)
..+.||+|+++++||.|+++|.||+++..++++|+| +|+|+++||||+++|++.+|+++||++++||+|+++|++|+++
T Consensus 23 ~~~~lske~ll~~yr~M~~~R~~e~~~~~l~~~g~i~g~~h~~~GqEa~~vg~~~~l~~~D~~~~~yR~~~~~la~G~~~ 102 (361)
T d2ozla1 23 VTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRAHGFTFTRGLSV 102 (361)
T ss_dssp SEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCCCCCTTCHHHHHHHHHTSCTTSEEECCSCCHHHHHHTTCCH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcccccCCCCHHHHHHHHHHhCCccCEecccccchheeeeecccc
Confidence 346799999999999999999999999999999999 7999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCCCCCccccCCCCCCccccCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHH
Q 016903 108 QEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALN 187 (380)
Q Consensus 108 ~~~~~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~ 187 (380)
.++|++++|+.+|+++|+++++|..+ .|+++.++++|+++|+|+|+|+|.|+++.+.+|+|++|||+++||.|||+||
T Consensus 103 ~~~~ae~~gk~~g~~~G~~~~~h~~~--~~~~~~~~ivg~~~p~A~G~A~a~k~~~~~~v~~~~~GDGa~~eG~f~Ealn 180 (361)
T d2ozla1 103 REILAELTGRKGGCAKGKGGSMHMYA--KNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYN 180 (361)
T ss_dssp HHHHHHHTTCTTSTTTTSSCTTCCCB--TTBCCCCCSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHHHHHHH
T ss_pred hhhhhhccCCcccccccccccccccc--ccccCccccccccchhHHHHHHHhhhccCCCeEEEEecCCCccCcchhhhhh
Confidence 99999999999999999999999875 4889999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016903 188 FSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 188 ~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~ 267 (380)
+|+.|+|||||||+||+|+++|+...+++..++.. +++|+++++|||+|+.+|++++++|++++|+++||+|||+.||
T Consensus 181 ~A~~~~lPvifv~eNN~yaist~~~~~~~~~~~~~--~~~~~~~~~vdGnD~~av~~a~~~A~~~~R~g~gP~liE~~Ty 258 (361)
T d2ozla1 181 MAALWKLPCIFICENNRYGMGTSVERAAASTDYYK--RGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTY 258 (361)
T ss_dssp HHHHTTCCEEEEEEECSEETTEEHHHHCSCCCGGG--TTTTSCEEEEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECC
T ss_pred hhhhccCceEEEEEeCCcccCCCchhccccccccc--cccccceEEeccCCchHHHHHHHHHHHHHhccCCCEEEEEeee
Confidence 99999999999999999999999988877766655 4678999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCChhhHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccc
Q 016903 268 RVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTD 347 (380)
Q Consensus 268 R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~e~~~i~~~~~~~v~~a~~~a~~~p~p~~~~~~~~ 347 (380)
|++||+++|++..||+++|++.|++++|||.+++++|+++|++|++++++|+++++++|++|+++|+++|.|+++++++|
T Consensus 259 R~~gHs~~D~~~~YR~~~Ei~~~~~k~DPi~~~~~~Li~~g~~se~e~~~i~~ei~~~V~~A~~~A~~sp~P~~~~l~~~ 338 (361)
T d2ozla1 259 RYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQFATADPEPPLEELGYH 338 (361)
T ss_dssp CSSCSSTTCCSCSSSCHHHHHHHHHHHCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHSCCCCGGGTTCS
T ss_pred cCCCCcccccccccCCHHHHHhhhhcCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHHHhc
Confidence 99999999988899999999998645799999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCc-cHHH
Q 016903 348 VYDVSPS-NLRE 358 (380)
Q Consensus 348 vy~~~~~-~~~~ 358 (380)
||++.|+ +++.
T Consensus 339 VYa~~~p~~~~~ 350 (361)
T d2ozla1 339 IYSSDPPFEVRG 350 (361)
T ss_dssp SSSSCCCEEEEC
T ss_pred ccCCCChHHHHh
Confidence 9998654 4443
|
| >d2r8oa2 c.36.1.10 (A:2-332) Transketolase (TK), PP module {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Transketolase (TK), PP module species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=2.6e-26 Score=221.45 Aligned_cols=180 Identities=24% Similarity=0.250 Sum_probs=148.1
Q ss_pred CcEEEcc--cccHH---HHHHcCC-CHHHHHHHhhcCCCCCCCCCCCccccCCC-CCCccccCcccccchHHHHHHHHHh
Q 016903 87 DDFVVPQ--YREPG---VLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYAL 159 (380)
Q Consensus 87 ~D~v~~~--yR~~~---~~l~~G~-~~~~~~~e~~g~~~~~~~G~~~~~H~~~~-~~~~~~~~g~lG~~lp~A~G~A~A~ 159 (380)
.|.++.+ |-..+ ++...|+ ...+.+..++. .|+.+++|+... .+++..++|+||+|+++|+|+|+|.
T Consensus 56 rDrfilSkGH~~~~~Ya~l~~~G~~~~~e~l~~f~~------~gs~~~ghp~~~~~~gve~stGsLG~Gl~~avG~Ala~ 129 (331)
T d2r8oa2 56 RDRFVLSNGHGSMLIYSLLHLTGYDLPMEELKNFRQ------LHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAE 129 (331)
T ss_dssp CCEEEESSGGGHHHHHHHHHHHTCSCCHHHHTTTTS------TTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHH
T ss_pred CCeEEEeccchHHHHHHHHHHhCCCCCHHHHHhcCC------CCCCCCCCCCcCcCCCcccCcCchhhhhHHHHHHHHHH
Confidence 3654443 54432 3334785 55555666654 377788998753 5788889999999999999999999
Q ss_pred hhcC----------CCCeeEEEeCccccCcchHHHHHHHHHHcCC-CEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 160 KMDR----------KDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 160 k~~~----------~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
|+.+ .++.|+|++|||+++||.+|||+++|+.++| ++|+|++||.+++++++.... ..++.+++++||
T Consensus 130 k~~~~~~~~~~~~~~~~~v~~l~GDGel~EG~~wEA~~~A~~~kL~nLi~i~D~N~~~~~g~~~~~~-~~~~~~rf~afG 208 (331)
T d2r8oa2 130 KTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWF-TDDTAMRFEAYG 208 (331)
T ss_dssp HHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHHTT
T ss_pred HHHhhhhccccccccCceEEEecccccccccchhHhhhhcchhcccceeeHHhhhhhcccccccccc-chhHHHHHHHcC
Confidence 8743 3678999999999999999999999999999 899999999999999887765 578999999999
Q ss_pred ceEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCC
Q 016903 229 VRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSD 276 (380)
Q Consensus 229 ~~~~-~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~D 276 (380)
|.++ .+||||..++.+|+.+|.. ..++|++|.|+|.+.+|.+...
T Consensus 209 w~vi~~~dghd~~~i~~A~~~a~~---~~~kP~~Ii~~TikGkG~~~~e 254 (331)
T d2r8oa2 209 WHVIRDIDGHDAASIKRAVEEARA---VTDKPSLLMCKTIIGFGSPNKA 254 (331)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTCTTTT
T ss_pred CeeecccccchHHHHHHHHHHHHh---hcCCCccceeeeeeecCCcccC
Confidence 9998 4899999999999988765 2578999999999999987543
|
| >d1r9ja2 c.36.1.10 (A:1-336) Transketolase (TK), PP module {Leishmania mexicana mexicana [TaxId: 44270]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Transketolase (TK), PP module species: Leishmania mexicana mexicana [TaxId: 44270]
Probab=99.94 E-value=4.4e-25 Score=213.28 Aligned_cols=234 Identities=18% Similarity=0.138 Sum_probs=165.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccccccchhhHHHHHHHhcCC-----C----CcEEEcc--cccHH---HHHHcCC-CHH
Q 016903 44 DMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-----N----DDFVVPQ--YREPG---VLLWRGF-SMQ 108 (380)
Q Consensus 44 ~M~~~R~~e~~~~~~~~~g~i~~~~~~~G~Ea~~~~~~~~l~-----~----~D~v~~~--yR~~~---~~l~~G~-~~~ 108 (380)
..+|...+|. ......|.++...++. |.+.+.....|+ | .|.++.+ |-..+ .+...|+ ...
T Consensus 9 ~~iR~~~~~~--v~~a~sGH~G~~ls~a--~i~~~Ly~~~l~~~~~~p~~~~rDrfvlSkGH~~~~lYa~l~~~G~~~~~ 84 (336)
T d1r9ja2 9 NCIRCLAADI--VQGGKSGHPGTPMGMA--PMSAVLWTEVMKYNSQDPDWVDRDRFVMSNGHGCALQYALLHMAGYNLTM 84 (336)
T ss_dssp HHHHHHHHHH--HHHHTCSCCHHHHHTH--HHHHHHHHTTCCCCTTCTTCTTCCEEEESSGGGHHHHHHHHHHHTCSCCH
T ss_pred HHHHHHHHHH--HHHcCCCChhHHHHHH--HHHHHHHHHHhccCCCCCCCCCCCeEEEeCCccchHHHHHHHHcCCCCcH
Confidence 3344444444 3333567665433333 555444444554 1 2655443 44432 3334675 445
Q ss_pred HHHHHhhcCCCCCCCCCCCccccCCC-CCCccccCcccccchHHHHHHHHHhhhc----------CCCCeeEEEeCcccc
Q 016903 109 EFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYALKMD----------RKDACAVTYFGDGGT 177 (380)
Q Consensus 109 ~~~~e~~g~~~~~~~G~~~~~H~~~~-~~~~~~~~g~lG~~lp~A~G~A~A~k~~----------~~~~~vv~~~GDG~~ 177 (380)
+.+..++. .|+..++|+... .+++..++|+||+|++.|+|+|+|.|+. .-++.|+|++|||++
T Consensus 85 ~~l~~~~~------~~s~~~ghp~~~~~pgve~stGsLG~Gl~~avG~A~a~k~~~~~~~~~~~~~~~~~vy~~~GDGel 158 (336)
T d1r9ja2 85 DDLKGFRQ------DGSRTPGHPERFVTPGVEVTTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCL 158 (336)
T ss_dssp HHHHTTTS------TTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHH
T ss_pred HHHhhhcc------CCCcCcccccccCCCcccccccccccCcchhhHHHHHHHHHhccccccccccccceeEEeccchhh
Confidence 55555654 377888898753 4678888999999999999999998752 236789999999999
Q ss_pred CcchHHHHHHHHHHcCC-CEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeC--CCHHHHHHHHHHHHHHhh
Q 016903 178 SEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDG--NDALAIYSAVHAAREMAI 254 (380)
Q Consensus 178 ~eG~~~Eal~~A~~~~L-pvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG--~D~~av~~a~~~a~~~ar 254 (380)
+||.+|||+++|+.++| ++|+|++||..++++++... ...++.+++++|||.++.||| +|...+..++..+..
T Consensus 159 ~EG~~~EA~~~A~~~~L~nLi~i~D~N~~~idg~~~~~-~~~d~~~rf~afGW~vi~Vdgg~~d~~~~~~~~~~a~~--- 234 (336)
T d1r9ja2 159 MEGVCQEALSLAGHLALEKLIVIYDSNYISIDGSTSLS-FTEQCHQKYVAMGFHVIEVKNGDTDYEGLRKALAEAKA--- 234 (336)
T ss_dssp HSHHHHHHHHHHHHHTCTTEEEEEEECSBCSSSBGGGT-CCCCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHH---
T ss_pred chHHHHHHHHHHHHhhcCCEEEEEeccccccccccccc-chhHHHHHHHHhccceEEEecCchHHHHHHHHhhhhhh---
Confidence 99999999999999999 79999999999998776543 457899999999999999987 445666666655543
Q ss_pred ccCCcEEEEEEeecCCCCCCCCCCC---CCCChhhHHHHH
Q 016903 255 GEGRPILIEALTYRVGHHTTSDDST---KYRPVDEIEWWR 291 (380)
Q Consensus 255 ~~~gP~lIe~~t~R~~gHs~~Dd~~---~Yr~~~e~~~~~ 291 (380)
..++|++|.|+|.+.+|++..+.+. ..-+++|++.++
T Consensus 235 ~~~kP~~Ii~kTiiG~G~~~e~~~~~Hg~pl~~eEi~~~k 274 (336)
T d1r9ja2 235 TKGKPKMIVQTTTIGFGSSKQGTEKVHGAPLGEEDIANIK 274 (336)
T ss_dssp CCSSCEEEEEECCTTTTSTTTTSGGGTSSCCCHHHHHHHH
T ss_pred ccCCCccceEEEEEeecccccCCcceeecCCCHHHHHHHH
Confidence 3568999999999999987655322 123566776654
|
| >d1gpua1 c.36.1.10 (A:3-337) Transketolase (TK), PP module {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Transketolase (TK), PP module species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=3.4e-25 Score=213.84 Aligned_cols=179 Identities=22% Similarity=0.210 Sum_probs=142.1
Q ss_pred cEEEc--ccccH---HHHHHcCC-CHHHHHHHhhcCCCCCCCCCCCccccCCCCCCccccCcccccchHHHHHHHHHhhh
Q 016903 88 DFVVP--QYREP---GVLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKM 161 (380)
Q Consensus 88 D~v~~--~yR~~---~~~l~~G~-~~~~~~~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~ 161 (380)
|.++. .|-.. +.+...|+ ...+-+..++. .|+.+++|+....+++..++|+||+|+++|+|+|+|.|+
T Consensus 59 DrfilSkGH~~~~lYa~l~~~G~~~~~e~L~~fr~------~gs~~~ghp~~~~pgie~stGsLG~Gl~~avG~A~a~k~ 132 (335)
T d1gpua1 59 DRFVLSNGHAVALLYSMLHLTGYDLSIEDLKQFRQ------LGSRTPGHPEFELPGVEVTTGPLGQGISNAVGMAMAQAN 132 (335)
T ss_dssp CEEEESSGGGHHHHHHHHHHTTCSCCHHHHTTTTC------TTCSCCSSCCTTSTTCCSCCCSTTHHHHHHHHHHHHHHH
T ss_pred CeEEEeCcchhHHHHHHHHHhCCCCCHHHHHhccc------CCCCCCCCCCCCCCCeEeCCCChhHHHHHHHHHHHHhHh
Confidence 64444 35442 34445785 44445555553 377788999876678888999999999999999999985
Q ss_pred ----------cCCCCeeEEEeCccccCcchHHHHHHHHHHcCC-CEEEEEEcCCcccccccccccCCcCHHHHHhhcCce
Q 016903 162 ----------DRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (380)
Q Consensus 162 ----------~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (380)
...++.|+|++|||+++||.+|||+.+|+.++| ++|+|+++|++++++++..... .++.+++++|||+
T Consensus 133 ~~~~~~~~~~~~~~~~v~~l~GDGel~EG~~~EA~~~A~~~~L~NLi~i~D~N~~~~dg~~~~~~~-~~~~~~f~a~GW~ 211 (335)
T d1gpua1 133 LAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDNKITIDGATSISFD-EDVAKRYEAYGWE 211 (335)
T ss_dssp HHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTCC-CCHHHHHHHHTCE
T ss_pred hhcccccCCcCCCCCcEEEEecchhhchhhhhhhHhHhhhhccCCEEEEEeccccccccccccccc-CCHHHHHHhCCCc
Confidence 334789999999999999999999999999999 8999999999999988776554 6899999999999
Q ss_pred EEEEeCC--CHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCC
Q 016903 231 SIRVDGN--DALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSD 276 (380)
Q Consensus 231 ~~~VdG~--D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~D 276 (380)
++.|||+ |...+..++.++.. ..++|++|.|+|.+.+|....+
T Consensus 212 vi~vdg~~~d~~~~~~~~~~~~~---~~~KPt~Iia~TikGkGs~~e~ 256 (335)
T d1gpua1 212 VLYVENGNEDLAGIAKAIAQAKL---SKDKPTLIKMTTTIGYGSLHAG 256 (335)
T ss_dssp EEEESCTTTCHHHHHHHHHHHHH---CTTSCEEEEEECCTTTTSTTTT
T ss_pred EEEEcCCchhHHHHHHHHhhhhc---ccCCCcceEEeeccCCcCcccC
Confidence 9999854 56666666665554 3568999999999999954433
|
| >d1itza1 c.36.1.10 (A:10-347) Transketolase (TK), PP module {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Transketolase (TK), PP module species: Maize (Zea mays) [TaxId: 4577]
Probab=99.93 E-value=2.5e-24 Score=207.96 Aligned_cols=228 Identities=17% Similarity=0.115 Sum_probs=161.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhhHHHHHHHhcCCC---------CcEEEcc--cccHHHHH-
Q 016903 34 SEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKN---------DDFVVPQ--YREPGVLL- 101 (380)
Q Consensus 34 ~~e~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~G~Ea~~~~~~~~l~~---------~D~v~~~--yR~~~~~l- 101 (380)
+.+.+.++-.. +|...+|. ......|.++...++. |.+.+.....|+. .|.++.+ |-+.+...
T Consensus 3 ~~~~~~~~~~~-iR~~~~~~--v~~a~sGH~G~~ls~a--di~~~Ly~~~l~~~~~~p~~~~rDrfilSkGH~~~~~Ya~ 77 (338)
T d1itza1 3 TGELLEKSVNT-IRFLAIDA--VEKANSGHPGLPMGCA--PMGHVLYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYAL 77 (338)
T ss_dssp CHHHHHHHHHH-HHHHHHHH--HHHHTCSCCHHHHHHH--HHHHHHHHHTCCCCTTCTTCTTCCEEEESSGGGHHHHHHH
T ss_pred cHHHHHHHHHH-HHHHHHHH--HHHcCCCCchHHHHHH--HHHHHHHHHHhCCCCCCCCCCCCCeEEEeccccchHHHHH
Confidence 44455444433 23333333 3333456654322222 4443333445541 2655543 54443222
Q ss_pred --HcCCCHHH--HHHHhhcCCCCCCCCCCCccccCCC-CCCccccCcccccchHHHHHHHHHhhhc----------CCCC
Q 016903 102 --WRGFSMQE--FANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYALKMD----------RKDA 166 (380)
Q Consensus 102 --~~G~~~~~--~~~e~~g~~~~~~~G~~~~~H~~~~-~~~~~~~~g~lG~~lp~A~G~A~A~k~~----------~~~~ 166 (380)
..|+...+ -+..++. .|+.+++|+... .+++..++|+||+|+++|+|+|+|.|+. ..+.
T Consensus 78 l~~~G~~~~~~~dL~~fr~------~~s~~~Ghp~~~~~pgve~stGsLG~Gl~~avG~A~a~k~~~~~~~~~~~~~~~~ 151 (338)
T d1itza1 78 LHLAGYDSVKEEDLKQFRQ------WGSRTPGHPENFETPGVEVTTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDH 151 (338)
T ss_dssp HHHHTCTTCCHHHHTTTTS------TTCSSCSSCCTTTCTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCC
T ss_pred HHHcCCccchHHHHHHhhc------cCCcCCccccCCCCCCccccCCcHHhhHHHHHHHHHHHHHHhccccccccccccc
Confidence 46763322 2444443 377788898753 5788889999999999999999998853 2467
Q ss_pred eeEEEeCccccCcchHHHHHHHHHHcCC-CEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCC--CHHHHH
Q 016903 167 CAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGN--DALAIY 243 (380)
Q Consensus 167 ~vv~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~--D~~av~ 243 (380)
+|+|++|||+++||.+|||+++|+.++| ++|+|+++|++++++++.. ....++.+++++|||.++.|+|+ |.+++.
T Consensus 152 ~v~vl~GDGel~EG~~wEA~~~A~~~~L~NLi~i~D~N~~~~dg~~~~-~~~~~~~~k~~a~Gw~vi~v~~g~~~~~~i~ 230 (338)
T d1itza1 152 YTYVILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNHISIDGDTEI-AFTEDVSTRFEALGWHTIWVKNGNTGYDDIR 230 (338)
T ss_dssp CEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGG-TCCSCHHHHHHHTTCEEEEESCTTTCHHHHH
T ss_pred eEEEEeCccccchHHHHHHHhHhhhhhccceeeeehhhcccccccccc-ccCCCHHHHHHhcCCeEEEeeCCchhHHHHH
Confidence 8999999999999999999999999999 8999999999999987654 44568999999999999998654 688888
Q ss_pred HHHHHHHHHhhccCCcEEEEEEeecCCCCCCCC
Q 016903 244 SAVHAAREMAIGEGRPILIEALTYRVGHHTTSD 276 (380)
Q Consensus 244 ~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~D 276 (380)
.+++.|.. ..++|++|.|+|...+|-+...
T Consensus 231 ~a~~~a~~---~~~kPt~Iia~TikGkG~~~~e 260 (338)
T d1itza1 231 AAIKEAKA---VTDKPTLIKVTTTIGFGSPNKA 260 (338)
T ss_dssp HHHHHHHH---CCSSCEEEEEECCTTTTCTTTT
T ss_pred HHHHHHHH---ccCCCceeEeecCcccCcCccC
Confidence 88887765 3578999999999999987644
|
| >d2ieaa2 c.36.1.10 (A:56-470) Pyruvate dehydrogenase E1 component, PP module {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Pyruvate dehydrogenase E1 component, PP module species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=4.2e-19 Score=175.86 Aligned_cols=192 Identities=18% Similarity=0.182 Sum_probs=140.5
Q ss_pred hHHHHHHHhcCC------CCcEEEcc-cccH---HHHHHcCCCHHHHHHHhhcCCCCCCCCCCCcccc--CCCCCCcccc
Q 016903 74 EAINIASAAAIK------NDDFVVPQ-YREP---GVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHY--GSNKHNYFTV 141 (380)
Q Consensus 74 Ea~~~~~~~~l~------~~D~v~~~-yR~~---~~~l~~G~~~~~~~~e~~g~~~~~~~G~~~~~H~--~~~~~~~~~~ 141 (380)
|...++....|+ .+|+|++- |=++ +.+...|+...+.+..++... .+.+++.|+ .....+....
T Consensus 60 ~l~~vl~~~~~~~p~~~~~d~~ilskGHas~~lYa~l~~~g~~~~~~l~~~r~~~----~~~~~~~~~~~~~~~~~~~~~ 135 (415)
T d2ieaa2 60 TIYDVCFNHFFRARNEQDGGDLVYFQGHISPGVYARAFLEGRLTQEQLDNFRQEV----HGNGLSSYPHPKLMPEFWQFP 135 (415)
T ss_dssp HHHHHHHHHTCCCCCSSSCCCEEECCGGGHHHHHHHHHHTTSSCHHHHTTBTCCT----TSSCBCSSCCTTTSTTTCCCC
T ss_pred HHHHHHHHhhcCCCCcCCCCCEEEecCcchHHHHHHHHHcCCCchhhHHHHhhhc----cCCCCCCCCCCCCCCCCCcCC
Confidence 444555666665 35777763 3333 234457876666666665421 122222222 2222344455
Q ss_pred CcccccchHHHHHHHHHhhh-------cCCCCeeEEEeCccccCcchHHHHHHHHHHcCC-CEEEEEEcCCccccccccc
Q 016903 142 SSTIATQLPHAVGAAYALKM-------DRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISD 213 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~-------~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~~~~~~~~~~ 213 (380)
++++|.+.+.++|.+.+.+. .+.+..|+|++|||+++||++|||+++|+.++| ++|+|+++|.+++++++..
T Consensus 136 ~~~~~~g~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~gDg~~~eg~~~ea~~~a~~~~l~nl~~i~d~N~~~~~~~~~~ 215 (415)
T d2ieaa2 136 TVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRLDGPVTG 215 (415)
T ss_dssp CCSTTHHHHHHHHHHHHHHHHHHTTSCCCTTCCEEEEEETGGGGSHHHHTTHHHHHHTTCTTEEEEEEECSBCSSSBSCT
T ss_pred CchhhhHHHHHHHHHHHHHHHhhhccccCCCceEEEEecccccchHHHHHHHHHHHHhCCCeEEEEEeCCceeeccChhc
Confidence 67777777777776665443 356789999999999999999999999999999 8999999999999998765
Q ss_pred ccC-CcCHHHHHhhcCceEEEE----------------------------------------------------------
Q 016903 214 QFR-SDGAVVKGRAYGVRSIRV---------------------------------------------------------- 234 (380)
Q Consensus 214 ~~~-~~~~~~~a~a~G~~~~~V---------------------------------------------------------- 234 (380)
... ..++.+++++|||.++.|
T Consensus 216 ~~~~~~~~~~~~~~~gw~v~~~~~~~~~~~~~~~d~~~al~~~~~~~v~g~~~~~~~~~ga~~~~~~~~~~~~~~~l~~~ 295 (415)
T d2ieaa2 216 NGKIINELEGIFEGAGWNVIKVMWGSRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYVREHFFGKYPETAALVAD 295 (415)
T ss_dssp TSCHHHHHHHHHHHTTCEEEEECBCGGGHHHHHHCSSCHHHHHHHHCCHHHHHHHTTSCHHHHHHHTGGGSHHHHTTSTT
T ss_pred cccchHHHHHHHHhcCceeEEeecchhhhhhhccchhhhhhhhhhccccccceeccccchhhhhhhhccccchhhHHHhh
Confidence 433 467889999999999877
Q ss_pred -----------eCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCC
Q 016903 235 -----------DGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHH 272 (380)
Q Consensus 235 -----------dG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gH 272 (380)
||||+.+++.+++++.+. .++|++|.++|.+.+|=
T Consensus 296 l~~~~~~~l~~dGHd~~~l~~a~~~ak~~---~d~P~vI~a~TiKGkGl 341 (415)
T d2ieaa2 296 WTDEQIWALNRGGHDPKKIYAAFKKAQET---KGKATVILAHTIKGYGM 341 (415)
T ss_dssp SCHHHHTTCCBGGGCHHHHHHHHHHHHHC---CSSCEEEEEECCTTTTC
T ss_pred hhhhhhhhhhhccCchhhhHHHHHHHHhc---CCCceEEEEecccccCC
Confidence 899999999999999874 56899999999998874
|
| >d2djia3 c.36.1.9 (A:364-592) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Pyruvate oxidase species: Aerococcus viridans [TaxId: 1377]
Probab=99.78 E-value=4.5e-19 Score=162.21 Aligned_cols=157 Identities=20% Similarity=0.262 Sum_probs=113.5
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cccccccc-------
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS------- 212 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~~------- 212 (380)
..|+||.++|.|+|+++|. +++.|+|++|||+|+++ ..+|.+|++++||+++||.||+ |++.....
T Consensus 50 ~~g~mG~~lp~aiGa~~a~----p~~~vv~i~GDGsf~m~--~~eL~ta~~~~lpi~iiV~nN~~~~~i~~~~~~~~~~~ 123 (229)
T d2djia3 50 LFATMGIAIPGGLGAKNTY----PDRQVWNIIGDGAFSMT--YPDVVTNVRYNMPVINVVFSNTEYAFIKNKYEDTNKNL 123 (229)
T ss_dssp SSCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSBCTHHHHHHHHHCSCC
T ss_pred Ccccccccchhhhhhhhhc----ccccccccccccccccc--cchhhhhhcccCCceEEEeCCchhhhhhHHHHhhcCCC
Confidence 4689999999999999884 78899999999999654 4569999999999766666554 65432111
Q ss_pred --cccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCC---CCCCCCCCCCCCChhhH
Q 016903 213 --DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG---HHTTSDDSTKYRPVDEI 287 (380)
Q Consensus 213 --~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~---gHs~~Dd~~~Yr~~~e~ 287 (380)
......|++++|++||+++++|+ +++++.+++++|++. ++.++|+|||+.+.+-. ++....++..+ ++.++
T Consensus 124 ~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~A~~~-~~~~~p~lIev~v~~~~~~p~~~~~~~~~~~-~~~~~ 199 (229)
T d2djia3 124 FGVDFTDVDYAKIAEAQGAKGFTVS--RIEDMDRVMAEAVAA-NKAGHTVVIDCKITQDRPIPVETLKLDSKLY-SEDEI 199 (229)
T ss_dssp CSCBCCCCCHHHHHHHTTSEEEEEC--BHHHHHHHHHHHHHH-HHTTCCEEEEEECCSCCCCCTTSCTTCTTTS-CHHHH
T ss_pred CcCcCCCCChhhhhhccCccEEEEe--cHHHhHHHHHHHHHh-cCCCCeEEEEEEeCCCCCCCccccccCcccc-CHHHH
Confidence 12345789999999999999998 889999999999874 44569999999998743 22222234433 44444
Q ss_pred H----HHHhcCChHHHHHHHHHHcCC
Q 016903 288 E----WWRTTQDPVTRFRKWIESNGW 309 (380)
Q Consensus 288 ~----~~~~~~DPi~~~~~~L~~~g~ 309 (380)
+ .|+ ..| +..++++|.+.|.
T Consensus 200 ~~~~e~~~-~~~-~~p~~~~le~~g~ 223 (229)
T d2djia3 200 KAYKERYE-AAN-LVPFREYLEAEGL 223 (229)
T ss_dssp HHHHHHTT-CTT-CCCHHHHHHHTTC
T ss_pred HHHHHhcc-ccc-CCchHHHHHHcCc
Confidence 3 332 122 3335788888875
|
| >d2ez9a3 c.36.1.9 (A:366-593) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Pyruvate oxidase species: Lactobacillus plantarum [TaxId: 1590]
Probab=99.74 E-value=3.9e-18 Score=155.79 Aligned_cols=120 Identities=19% Similarity=0.241 Sum_probs=94.9
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccc--------
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI-------- 211 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~-------- 211 (380)
..|+||+++|.|+|+++|. ++++|||++|||+|++. ..+|.+|++++||+++||.||+ |++....
T Consensus 53 ~~g~mG~glpaAiGa~la~----p~~~Vv~i~GDG~f~m~--~~EL~Ta~~~~lpi~~vV~NN~~yg~i~~~q~~~~~~~ 126 (228)
T d2ez9a3 53 LFATMGVGIPGAIAAKLNY----PERQVFNLAGDGGASMT--MQDLATQVQYHLPVINVVFTNCQYGWIKDEQEDTNQND 126 (228)
T ss_dssp SSCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSBCHHHHHHHHHHCSSC
T ss_pred ccccccccchhhhhhhhhh----ccceeEeecCCcccccc--chhhhhhccccCceEEEEeccccchhhhhhhhhcccCC
Confidence 4588999999999999884 78899999999999753 4569999999999777666664 6543211
Q ss_pred --ccccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCC
Q 016903 212 --SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 270 (380)
Q Consensus 212 --~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~ 270 (380)
.......|+++.|++||+++++|+ ++.++..++++|.. .+.++|+|||+.+.+-.
T Consensus 127 ~~~~~l~~~d~~~iA~a~G~~~~~v~--~~~el~~al~~a~a--l~~~~p~lIev~vd~d~ 183 (228)
T d2ez9a3 127 FIGVEFNDIDFSKIADGVHMQAFRVN--KIEQLPDVFEQAKA--IAQHEPVLIDAVITGDR 183 (228)
T ss_dssp CCSSBCCCCCHHHHHHHTTCEEEEEC--BGGGHHHHHHHHHH--HTTTSCEEEEEECCCCC
T ss_pred cccccccCccHHhhccccccceEEeC--CHHHHHHHHHHHHH--HcCCCeEEEEEEECCCC
Confidence 112345799999999999999998 88899999987643 24689999999997754
|
| >d1q6za3 c.36.1.9 (A:342-524) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Benzoylformate decarboxylase species: Pseudomonas putida [TaxId: 303]
Probab=99.73 E-value=7.4e-18 Score=148.87 Aligned_cols=114 Identities=22% Similarity=0.326 Sum_probs=91.5
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEE-EcCCccccccc--------
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPI-------- 211 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv-~NN~~~~~~~~-------- 211 (380)
+.|+||+++|.|+|+++|. ++++|||++|||+|++. ..+|.+|++++||+++|| +||+|++....
T Consensus 58 ~~g~mG~~~p~AiGa~la~----p~~~vv~i~GDG~f~~~--~~el~ta~~~~lpv~~iV~nN~~~g~~~~~~~~~~~~~ 131 (183)
T d1q6za3 58 AAGGLGFALPAAIGVQLAE----PERQVIAVIGDGSANYS--ISALWTAAQYNIPTIFVIMNNGTYGALRWFAGVLEAEN 131 (183)
T ss_dssp TTCCTTSHHHHHHHHHHHC----TTSCEEEEEEHHHHTTT--GGGHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHTCCS
T ss_pred cCCCcccchhHHHhhhhhc----cccceEEeccccccccc--cHHHHHHHHhCCCEEEEEEeccccchhhhhhhcccccC
Confidence 4578999999999998884 68899999999999764 345999999999966655 55557653211
Q ss_pred --ccccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 212 --SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 212 --~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
....+..++.+++++||+++.+|+ +++++.+++++|++ .++|+|||++|
T Consensus 132 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lieV~T 182 (183)
T d1q6za3 132 VPGLDVPGIDFRALAKGYGVQALKAD--NLEQLKGSLQEALS----AKGPVLIEVST 182 (183)
T ss_dssp CCSCBCCCCCHHHHHHHHTCEEEEES--SHHHHHHHHHHHHT----CSSCEEEEEEB
T ss_pred cccccCCCccHHHHHHHcCCEEEEEC--CHHHHHHHHHHHHh----CCCcEEEEEEe
Confidence 112345689999999999999998 99999999988875 58999999998
|
| >d2ihta3 c.36.1.9 (A:375-572) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Carboxyethylarginine synthase species: Streptomyces clavuligerus [TaxId: 1901]
Probab=99.72 E-value=7.4e-18 Score=150.74 Aligned_cols=115 Identities=26% Similarity=0.334 Sum_probs=92.2
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccc---------
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI--------- 211 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~--------- 211 (380)
.|+||.++|.|+|+++|. ++++|||++|||+|++. ..+|.+++++++|+++||.||+ |++....
T Consensus 61 ~g~mG~~lp~aiGa~~a~----p~~~Vv~i~GDGsf~~~--~~el~t~~~~~lpi~ivV~NN~~~g~i~~~q~~~~~~~~ 134 (198)
T d2ihta3 61 CSSFGYGIPAAIGAQMAR----PDQPTFLIAGDGGFHSN--SSDLETIARLNLPIVTVVVNNDTNGLIELYQNIGHHRSH 134 (198)
T ss_dssp SCCTTCHHHHHHHHHHHS----TTSCEEEEEEHHHHHHT--GGGHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHHSSCC
T ss_pred cccchhHHHHHHHHhhhh----cccceEeeccccccccc--chhhhhhhhhhhhhhHHHhhccccceEeeeecccccccc
Confidence 579999999999998884 78899999999999653 3569999999999777666554 5543211
Q ss_pred --ccccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 212 --SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 --~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
.......|+.++|++||+++++|+ +++++.+++++|++ .++|+|||++|.+
T Consensus 135 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~vd~ 187 (198)
T d2ihta3 135 DPAVKFGGVDFVALAEANGVDATRAT--NREELLAALRKGAE----LGRPFLIEVPVNY 187 (198)
T ss_dssp GGGTBCCCCCHHHHHHHTTCEEEECC--SHHHHHHHHHHHHT----SSSCEEEEEEBCC
T ss_pred ccccccCCcchhhhccccCceEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEcCC
Confidence 112345789999999999999998 89999988888875 5899999999843
|
| >d1ybha3 c.36.1.9 (A:460-667) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Acetohydroxyacid synthase catalytic subunit species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
Probab=99.71 E-value=1.2e-17 Score=150.46 Aligned_cols=117 Identities=21% Similarity=0.243 Sum_probs=94.3
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Cccccccc--------
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI-------- 211 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~~~~~~-------- 211 (380)
..++||.++|.|+|+++| .++++|||++|||+|++. ..+|.+|++++||+++||.|| +|++....
T Consensus 50 ~~g~mG~glpaaiGa~~A----~p~~~Vi~i~GDGsf~m~--~~El~Ta~r~~lpi~iiV~NN~~~g~i~~~q~~~~~~~ 123 (208)
T d1ybha3 50 GLGAMGFGLPAAIGASVA----NPDAIVVDIDGDGSFIMN--VQELATIRVENLPVKVLLLNNQHLGMVMQWEDRFYKAN 123 (208)
T ss_dssp SSCCTTCHHHHHHHHHHH----CTTSCEEEEEEHHHHHHT--TTHHHHHHHTTCCEEEEEEECSBCHHHHHHHHHHSTTC
T ss_pred ccccchhhhhhHHHHHhc----CCCCcEEEEccCCchhhh--hhhHHHHHHhCCCEEEEEEeccccccceehhhhccccc
Confidence 358999999999999888 478899999999999754 245999999999977776655 46543211
Q ss_pred ----------ccccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 016903 212 ----------SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 269 (380)
Q Consensus 212 ----------~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~ 269 (380)
......+|+++.|++||+++++|+ +++++.+++++|++ .++|+|||+.+.+-
T Consensus 124 ~~~~~~~~~~~~~~~~pd~~~iA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~id~~ 185 (208)
T d1ybha3 124 RAHTFLGDPAQEDEIFPNMLLFAAACGIPAARVT--KKADLREAIQTMLD----TPGPYLLDVICPHQ 185 (208)
T ss_dssp CCSCBCSCGGGTTSCSSCHHHHHHHTTCCEEEEC--BHHHHHHHHHHHHH----SSSCEEEEEECCTT
T ss_pred ccccccccccccCCCCCCHHHhhccCCceEEEcC--CHHHHHHHHHHHHh----CCCCEEEEEEECCC
Confidence 111234689999999999999999 99999999999986 48999999999764
|
| >d1ozha3 c.36.1.9 (A:367-558) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Catabolic acetolactate synthase species: Klebsiella pneumoniae [TaxId: 573]
Probab=99.68 E-value=3.7e-17 Score=145.37 Aligned_cols=116 Identities=21% Similarity=0.284 Sum_probs=92.8
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEE-EcCCcccccccc-------
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPIS------- 212 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv-~NN~~~~~~~~~------- 212 (380)
..|+||+++|.|+|+++|. +++.|||++|||+|+++ ..+|.++.++++|+++|| +||.|++.....
T Consensus 52 ~~g~mG~~l~~aiGa~la~----p~~~vi~i~GDG~f~~~--~~el~t~~~~~l~~~iiv~nN~~~~~~~~~~~~~~~~~ 125 (192)
T d1ozha3 52 GQQTMGVALPWAIGAWLVN----PERKVVSVSGDGGFLQS--SMELETAVRLKANVLHLIWVDNGYNMVAIQEEKKYQRL 125 (192)
T ss_dssp TTCCTTCHHHHHHHHHHHS----TTSEEEEEEEHHHHHHH--TTHHHHHHHHTCCEEEEEEECSBCHHHHHHHHHHHSSC
T ss_pred ccccccccccchhHHHhhc----ccccceeecccccccch--hhhHHHHhhhcCceeEEEEcCCCccccccccccccCcc
Confidence 3589999999999999885 68899999999999754 355999999999866555 556676653321
Q ss_pred --cccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 213 --DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 213 --~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
......++.++|++||+++++|+ +++++.+++++|++ .+||+|||+.|.|
T Consensus 126 ~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIeV~vd~ 177 (192)
T d1ozha3 126 SGVEFGPMDFKAYAESFGAKGFAVE--SAEALEPTLRAAMD----VDGPAVVAIPVDY 177 (192)
T ss_dssp CSCBCCCCCHHHHHHTTTSEEEECC--SGGGHHHHHHHHHH----SSSCEEEEEEBCC
T ss_pred ccCcCCCCCHHHHHHHhccccEEeC--CHHHHHHHHHHHHH----cCCcEEEEEEeCC
Confidence 11234689999999999999998 88899999888875 5899999999844
|
| >d1t9ba3 c.36.1.9 (A:461-687) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Acetohydroxyacid synthase catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.66 E-value=1.2e-16 Score=145.64 Aligned_cols=117 Identities=19% Similarity=0.220 Sum_probs=94.8
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Cccccccc--------
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI-------- 211 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~~~~~~-------- 211 (380)
..++||.++|.|+|+++|. ++++|||++|||+|++. ..+|.+|++++||+++||.|| +|+.....
T Consensus 61 ~~g~mG~~~~aaiGa~lA~----p~r~Vv~i~GDGsf~m~--~~EL~Ta~r~~l~i~iiV~nN~~~g~~~~~~~~~~~~~ 134 (227)
T d1t9ba3 61 GLGTMGYGLPAAIGAQVAK----PESLVIDIDGDASFNMT--LTELSSAVQAGTPVKILILNNEEQGMVTQWQSLFYEHR 134 (227)
T ss_dssp SSCCTTCHHHHHHHHHHHC----TTSEEEEEEEHHHHHHH--GGGHHHHHHHTCCCEEEEEECSSCHHHHHHHHHHSTTC
T ss_pred ccccchhhHHHHHHHHhcC----CCCeEEEeCCCcccccc--hHHHHHHhhcCCceEEEEEecccccchhHHHhhhhccc
Confidence 4689999999999999984 78899999999999754 345999999999966666555 46533211
Q ss_pred --ccccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 016903 212 --SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 269 (380)
Q Consensus 212 --~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~ 269 (380)
......+|+.+.|++||+++++|. +.+++..++++|++ .++|+|||+.+.+-
T Consensus 135 ~~~~~~~~~d~~~iA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lieV~vd~~ 188 (227)
T d1t9ba3 135 YSHTHQLNPDFIKLAEAMGLKGLRVK--KQEELDAKLKEFVS----TKGPVLLEVEVDKK 188 (227)
T ss_dssp CCSCCCCCCCHHHHHHHTTCEEEEEC--SHHHHHHHHHHHHH----CSSCEEEEEEBCSS
T ss_pred cccccCCCCCHHHHHhhcccceEeeC--CHHHHHHHHHHHHH----CCCCEEEEEEECCC
Confidence 112345789999999999999998 99999999999886 48999999999764
|
| >d1pvda3 c.36.1.9 (A:361-556) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Pyruvate decarboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.66 E-value=5.4e-17 Score=144.71 Aligned_cols=122 Identities=14% Similarity=0.142 Sum_probs=95.1
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEE-EEEcCCcccccccc------c
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIF-ICRNNGWAISTPIS------D 213 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~-vv~NN~~~~~~~~~------~ 213 (380)
..|+||+++|.|+|+|+|.|...++++|||++|||+|.+. ..+|.+|.++++|+++ |++||+|++..... .
T Consensus 51 ~~g~mG~~l~~aiG~alaa~~~~p~~~Vv~i~GDGsf~m~--~~eL~ta~~~~l~i~~iV~nN~~y~~~~~~~~~~~~~~ 128 (196)
T d1pvda3 51 LWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLT--VQEISTMIRWGLKPYLFVLNNDGYTIEKLIHGPKAQYN 128 (196)
T ss_dssp TTCCTTHHHHHHHHHHHHHHHHCTTCCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEESSSCHHHHTTSCTTCGGG
T ss_pred CcCcccccccchhHHHHHHHhcCCCCceeeccCccccccc--cccccccccccccceEEEEeCCccceeEeeccCccccc
Confidence 3589999999999999999999999999999999999653 4569999999998555 55666776533221 1
Q ss_pred ccCCcCHHHHHhhcCc---eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 214 QFRSDGAVVKGRAYGV---RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 214 ~~~~~~~~~~a~a~G~---~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
.....|+.+.|++||. .+.+|+ ++.++.++++++. ..++++|+|||+++.|
T Consensus 129 ~~~~~d~~~la~a~G~~~~~~~~v~--~~~el~~al~~~~--~~~~~~~~lIeV~i~~ 182 (196)
T d1pvda3 129 EIQGWDHLSLLPTFGAKDYETHRVA--TTGEWDKLTQDKS--FNDNSKIRMIEIMLPV 182 (196)
T ss_dssp CCCCCCGGGHHHHTTCSSEEEEEEC--BHHHHHHHHTCTT--TTSCSSEEEEEEECCT
T ss_pred cCCCCCHHHHHHHhCCCCceEEEec--CHHHHHHHHHHHH--HhCCCCcEEEEEECCC
Confidence 1234689999999985 456677 8999988887653 2346799999998854
|
| >d2ji7a3 c.36.1.9 (A:370-552) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Oxalyl-CoA decarboxylase species: Oxalobacter formigenes [TaxId: 847]
Probab=99.65 E-value=2.7e-16 Score=138.65 Aligned_cols=115 Identities=19% Similarity=0.194 Sum_probs=91.1
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccc--------
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPIS-------- 212 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~-------- 212 (380)
..|+||.++|.|+|++ |. ++++|+|++|||+|++.. .+|.+|+++++|+++||.||+--+.....
T Consensus 55 ~~g~mG~~l~~aig~~-a~----~~~~vv~i~GDGsf~~~~--~el~ta~~~~l~i~iiV~NN~g~~~~~q~~~~~~~~~ 127 (183)
T d2ji7a3 55 TWGVMGIGMGYCVAAA-AV----TGKPVIAVEGDSAFGFSG--MELETICRYNLPVTVIIMNNGGIYKGNEADPQPGVIS 127 (183)
T ss_dssp TTTCTTCHHHHHHHHH-HH----HCSCEEEEEEHHHHHTTG--GGHHHHHHTTCCEEEEEEECSBSSCSCCCCSBTTBCC
T ss_pred Cccccccccchhhhhh-cC----CcceEEEEEcCcchhhch--hhhhhhhhccccchhhhhhhhhhhhhhhccccccccc
Confidence 3588999999998766 32 578899999999997753 45999999999999999888621111110
Q ss_pred -cccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 213 -DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 213 -~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
......++.+.|++||+++++|+ +++++.+++++|++ .++|+|||+.|.+
T Consensus 128 ~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~idp 178 (183)
T d2ji7a3 128 CTRLTRGRYDMMMEAFGGKGYVAN--TPAELKAALEEAVA----SGKPCLINAMIDP 178 (183)
T ss_dssp TTBCCCCCHHHHHHHTTCEEEEEC--SHHHHHHHHHHHHH----HTSCEEEEEEBCT
T ss_pred cccccccchhhhhhhcCCcEEEeC--CHHHHHHHHHHHHh----CCCcEEEEEEECC
Confidence 11234689999999999999998 99999999999886 4899999999854
|
| >d1zpda3 c.36.1.9 (A:363-566) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Pyruvate decarboxylase species: Zymomonas mobilis [TaxId: 542]
Probab=99.65 E-value=2.4e-16 Score=141.43 Aligned_cols=117 Identities=20% Similarity=0.217 Sum_probs=90.2
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEE-cCCccccccccc----cc
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICR-NNGWAISTPISD----QF 215 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~-NN~~~~~~~~~~----~~ 215 (380)
..|+||+++|.|+|+++|. +++.|||++|||+|++ ...+|.+|+++++|+++||. |++|++.....+ ..
T Consensus 49 ~~g~mG~~l~aAiGa~la~----p~~~vv~i~GDGsf~m--~~~eL~Ta~~~~lpi~iiV~NN~~~g~~~~~~~~~~~~~ 122 (204)
T d1zpda3 49 QWGHIGWSVPAAFGYAVGA----PERRNILMVGDGSFQL--TAQEVAQMVRLKLPVIIFLINNYGYTIEVMIHDGPYNNI 122 (204)
T ss_dssp TTCCTTTHHHHHHHHHHHC----TTSEEEEEEEHHHHHH--HGGGHHHHHHTTCCCEEEEEECSSCHHHHTTSCCGGGCC
T ss_pred CCcccchhhHHHHHHHHhC----CCCceeccccccceee--eecccchhhhcccccceEEEecccccccceecccccccc
Confidence 4588999999999999884 7899999999999975 45679999999999766555 556776433322 22
Q ss_pred CCcCHHHHHh---------hcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 216 RSDGAVVKGR---------AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 216 ~~~~~~~~a~---------a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
...++.+.++ ++|+++++|+ ++.++.+++++|+. +.++|+|||+.+.|
T Consensus 123 ~~~d~~~~~~~~~~~~~a~~~g~~~~~v~--~~~el~~al~~al~---~~~gp~lieV~vd~ 179 (204)
T d1zpda3 123 KNWDYAGLMEVFNGNGGYDSGAAKGLKAK--TGGELAEAIKVALA---NTDGPTLIECFIGR 179 (204)
T ss_dssp CCCCHHHHHHHHHCTTSSSCCCCEEEEES--BHHHHHHHHHHHHH---CCSSCEEEEEECCT
T ss_pred chhhhhhhhhhcCcchhhhccCccEEEec--CHHHHHHHHHHHHH---cCCCcEEEEEEECc
Confidence 3456666555 4589999998 99999999998864 35799999998743
|
| >d1ovma3 c.36.1.9 (A:356-551) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Indole-3-pyruvate decarboxylase species: Enterobacter cloacae [TaxId: 550]
Probab=99.63 E-value=1.6e-16 Score=141.71 Aligned_cols=116 Identities=19% Similarity=0.209 Sum_probs=89.7
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEE-cCCcccccccc------c
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICR-NNGWAISTPIS------D 213 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~-NN~~~~~~~~~------~ 213 (380)
..|+||+++|.|+|+++|. ++++|||++|||+|+++ ..+|.+|.++++|+++||. |++|++....+ .
T Consensus 51 ~~g~mG~~l~~aiGa~la~----p~~~vv~i~GDG~f~~~--~~eL~ta~~~~l~i~iiV~nN~~~~~~~~~~~~~~~~~ 124 (196)
T d1ovma3 51 LWGSIGYTLAAAFGAQTAC----PNRRVIVLTGDGAAQLT--IQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRYN 124 (196)
T ss_dssp TTCCTTHHHHHHHHHHHHC----TTSCEEEEEEHHHHHHH--TTHHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGGG
T ss_pred CCccccccchhhHHHHHhh----hccceecccccccceee--cccccccccccccceEEEEecCccccchhhhccccccc
Confidence 3579999999999999985 67899999999999764 4679999999998666555 55677643221 1
Q ss_pred ccCCcCHHHHHhhcCc----eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 214 QFRSDGAVVKGRAYGV----RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 214 ~~~~~~~~~~a~a~G~----~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
.....++...+++||+ ++++|. ++.++.++++++++ .+||+|||+++.|
T Consensus 125 ~~~~~~~~~~a~~~g~~~~~~~~~v~--~~~el~~al~~a~~----~~gp~lIev~~~~ 177 (196)
T d1ovma3 125 DIALWNWTHIPQALSLDPQSECWRVS--EAEQLADVLEKVAH----HERLSLIEVMLPK 177 (196)
T ss_dssp CCCCCCGGGSTTTSCSSCCEEEEEEC--BHHHHHHHHHHHTT----CSSEEEEEEECCT
T ss_pred cccccccchhHHhcCccccceeEEEe--cHHHHHHHHHHHHH----CCCcEEEEEEeCh
Confidence 2234578888888885 678887 88898888877764 6899999998843
|
| >d2c42a2 c.36.1.12 (A:786-1232) Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI {Desulfovibrio africanus [TaxId: 873]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: PFOR PP module domain: Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI species: Desulfovibrio africanus [TaxId: 873]
Probab=98.20 E-value=4.1e-06 Score=81.18 Aligned_cols=101 Identities=15% Similarity=0.141 Sum_probs=75.9
Q ss_pred hhcCCCCeeEEEeCcccc-CcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccccc----------------ccCCcCHH
Q 016903 160 KMDRKDACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD----------------QFRSDGAV 221 (380)
Q Consensus 160 k~~~~~~~vv~~~GDG~~-~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~~~----------------~~~~~~~~ 221 (380)
+....+..||++.|||.+ ..|. .+|.-|...+.||++||.||. |++++-+.. .....|+.
T Consensus 164 ~d~~~k~~V~~~gGDG~~~dIG~--~~L~~A~~rg~nit~ivlDNe~Y~nTGgQ~S~~TP~Ga~t~ttp~Gk~~~kkdi~ 241 (447)
T d2c42a2 164 SDLYTKKSVWIFGGDGWAYDIGY--GGLDHVLASGEDVNVFVMDTEVYSNTGGQSSKATPTGAVAKFAAAGKRTGKKDLA 241 (447)
T ss_dssp GGGTSCCEEEEEEEHHHHHTTTH--HHHHHHHHTTCSCEEEEEECSSBTTTTCBCCTTSCTTCCBBTBTTCCSSCCCCHH
T ss_pred hhcccCCcEEEEecCccHhhcCh--HHHHHHHHcCCCceEEEEcCccccCCCCcCCCCCcCCeecccccCCCcCCCCCHH
Confidence 334457789999999987 5563 457788889999888887665 655542211 11234789
Q ss_pred HHHhhcCceEE-EEe-CCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 222 VKGRAYGVRSI-RVD-GNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 222 ~~a~a~G~~~~-~Vd-G~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
.++.++|.+.+ ++. +.++..+.+++++|.++ +||.+|++.+
T Consensus 242 ~ia~a~g~~YVA~~s~~~~~~~l~kaikeA~~~----~GpS~I~~~s 284 (447)
T d2c42a2 242 RMVMTYGYVYVATVSMGYSKQQFLKVLKEAESF----PGPSLVIAYA 284 (447)
T ss_dssp HHHHTTSSSEEEEECTTTCHHHHHHHHHHHHHS----SSCEEEEEEC
T ss_pred HHHHHCCCceEEEEeCCCCHHHHHHHHHHHHhC----CCCeEEEeec
Confidence 99999998865 564 78999999999999875 8999999876
|
| >d2ji7a2 c.36.1.5 (A:7-194) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Oxalyl-CoA decarboxylase species: Oxalobacter formigenes [TaxId: 847]
Probab=96.51 E-value=0.0049 Score=52.41 Aligned_cols=109 Identities=15% Similarity=0.091 Sum_probs=73.7
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.+++. +.-.++++..|=|.++ ...+|..|...++|+|+|.-+-.-.............|..+.++.+-
T Consensus 54 ~~~A~gyar~t---g~~~v~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~q~~d~~~~~~~~t 127 (188)
T d2ji7a2 54 GYAASIAGYIE---GKPGVCLTVSAPGFLN---GVTSLAHATTNCFPMILLSGSSEREIVDLQQGDYEEMDQMNVARPHC 127 (188)
T ss_dssp HHHHHHHHHHH---SSCEEEEECSHHHHHH---HHHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTCCCHHHHTGGGS
T ss_pred hhHHHHHHhhh---cccceeeccccccccc---cchhHHHHHHhcccceEEeccCchhhhcccccccceeeeecccCCcc
Confidence 44566666553 4445566666777665 45667888889999999996543221111111222346777888887
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEE
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEAL 265 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~-gP~lIe~~ 265 (380)
-...+|. +++++...+++|+..+..++ ||+.|++-
T Consensus 128 k~~~~v~--~~~~i~~~~~~A~~~a~~~~~GPV~l~iP 163 (188)
T d2ji7a2 128 KASFRIN--SIKDIPIGIARAVRTAVSGRPGGVYVDLP 163 (188)
T ss_dssp SEEEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred hhhhccc--cccccHHHHHHHHHHHhCCCCceEEEEcC
Confidence 7788887 88888888888888887765 69999985
|
| >d2djia2 c.36.1.5 (A:3-186) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Pyruvate oxidase species: Aerococcus viridans [TaxId: 1377]
Probab=96.47 E-value=0.0049 Score=52.28 Aligned_cols=108 Identities=20% Similarity=0.087 Sum_probs=73.2
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.+.+ .+.-.++++..|=|.++ ...+|..|...++|||+|+-+........ ..+...|....++.+.
T Consensus 56 ~~~A~gyar~---tg~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~--~~~Q~~d~~~~~~~it 127 (184)
T d2djia2 56 AMAAVMQSKF---GGNLGVTVGSGGPGASH---LINGLYDAAMDNIPVVAILGSRPQRELNM--DAFQELNQNPMYDHIA 127 (184)
T ss_dssp HHHHHHHHHT---TCCCEEEEECTTHHHHT---THHHHHHHHHHTCCEEEEEEESCGGGTTT--TCTTCCCCHHHHHTTC
T ss_pred HHHHHhhhhc---ccCcceeeccccccccc---hhHhHHHHHHhCccceeecccchhhHhhc--Ccccccccccchhhhc
Confidence 3445555533 33444555666778876 34668888889999999997654322111 1111235566777776
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
-...+|. +++++.+.+++|+..+..++||+.|++-.
T Consensus 128 k~~~~v~--~~~~~~~~~~~A~~~a~~~rGPv~i~iP~ 163 (184)
T d2djia2 128 VYNRRVA--YAEQLPKLVDEAARMAIAKRGVAVLEVPG 163 (184)
T ss_dssp SEEEECC--SGGGHHHHHHHHHHHHHHTTSEEEEEEET
T ss_pred ceeeccc--cchhhHHHHHHHHHHHhCCCCCEEEEeCc
Confidence 6677777 88889999999998888888999999854
|
| >d1zpda2 c.36.1.5 (A:2-187) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Pyruvate decarboxylase species: Zymomonas mobilis [TaxId: 542]
Probab=96.33 E-value=0.013 Score=49.63 Aligned_cols=109 Identities=17% Similarity=0.114 Sum_probs=71.3
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccc---cccccC---CcCHHH
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTP---ISDQFR---SDGAVV 222 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~---~~~~~~---~~~~~~ 222 (380)
.-+|.|.+... +. ..+++..|=|.++ ...++..|..-++|+|+|+-+........ ...... ..+..+
T Consensus 53 ~~mA~gyar~t---g~-~~v~~t~GpG~~N---~~~gl~~A~~~~~Pvl~isg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (186)
T d1zpda2 53 GFSAEGYARAK---GA-AAAVVTYSVGALS---AFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLE 125 (186)
T ss_dssp HHHHHHHHHHH---SC-EEEEECTTTTHHH---HHHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCCHHHH
T ss_pred ehhhhhhhhcc---cc-ceeEeeccccchh---hhhhhhhhhhcccceEEEecccCcccccCCCcceeecCCcchhhhhh
Confidence 44666666543 32 2233345655554 44678888899999999997654332211 111111 123456
Q ss_pred HHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 223 KGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 223 ~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
.++.+--...++. +++++.+.+++|+..+..+++|+.|++-.
T Consensus 126 ~~~~vtk~~~~v~--~~~~~~~~i~~A~~~A~~~~~PV~l~iP~ 167 (186)
T d1zpda2 126 MAKNITAAAEAIY--TPEEAPAKIDHVIKTALREKKPVYLEIAC 167 (186)
T ss_dssp HHGGGCSCEEEEC--SGGGHHHHHHHHHHHHHHHTCCEEEEEET
T ss_pred ccCCceeeeeEcC--CHHHHHHHHHHHHHHHhhCCCCEEEECCc
Confidence 7788877788887 88888888999988888888999999853
|
| >d1ozha2 c.36.1.5 (A:7-187) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Catabolic acetolactate synthase species: Klebsiella pneumoniae [TaxId: 573]
Probab=96.27 E-value=0.011 Score=49.80 Aligned_cols=108 Identities=15% Similarity=0.032 Sum_probs=75.0
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|-|.+... +.-.++++..|=|.++ ..-++..|..-++|||+|.-+......... .....|....++.+.
T Consensus 55 ~~~A~gyar~t---g~~gv~~~t~GpG~~n---~~~gi~~A~~~~~Pvl~isg~~~~~~~~~~--~~q~~d~~~~~~~~t 126 (181)
T d1ozha2 55 AFMAAAVGRIT---GKAGVALVTSGPGCSN---LITGMATANSEGDPVVALGGAVKRADKAKQ--VHQSMDTVAMFSPVT 126 (181)
T ss_dssp HHHHHHHHHHH---SSCEEEEECSTHHHHT---THHHHHHHHHHTCCEEEEEEECCTTTC--------CCCHHHHHGGGC
T ss_pred HHHHHHHHHhc---CCccceeeccchhhhh---hhhhHHHHhhcCCceeeeecccchhhcccc--ccccccccccccccc
Confidence 44566666553 4445566666777776 346688889999999999987653322211 122346778888888
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~-gP~lIe~~t 266 (380)
-...+|. +++++.+.+++|+..+..++ ||+.|++-.
T Consensus 127 k~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~ 163 (181)
T d1ozha2 127 KYAIEVT--APDALAEVVSNAFRAAEQGRPGSAFVSLPQ 163 (181)
T ss_dssp SEEEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEEH
T ss_pred hheeccC--chhHHHHHHHHHHHHHhhCCCccEEEEcCh
Confidence 7788887 88888899999998888875 799999854
|
| >d2ez9a2 c.36.1.5 (A:9-182) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Pyruvate oxidase species: Lactobacillus plantarum [TaxId: 1590]
Probab=96.07 E-value=0.011 Score=49.54 Aligned_cols=108 Identities=15% Similarity=0.059 Sum_probs=69.1
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|-|.+... ++..++++..|=|.++ ..-+|..|...++|+|+|.-+..-..... ......|....++.+-
T Consensus 55 ~~~A~gyar~t---gk~gv~~~t~GpG~~N---~~~gl~~A~~~~~P~l~i~g~~~~~~~~~--~~~Q~~d~~~~~~~it 126 (174)
T d2ez9a2 55 AMAAAADAKLT---GKIGVCFGSAGPGGTH---LMNGLYDAREDHVPVLALIGQFGTTGMNM--DTFQEMNENPIYADVA 126 (174)
T ss_dssp HHHHHHHHHHH---SSCEEEEECTTHHHHT---THHHHHHHHHTTCCEEEEEEECCTTTTTS--CCTTCCCCHHHHTTTC
T ss_pred HHHHHHHHhhc---CceeEEeecccccccc---hhhhHHHHHhcCccceeeeccccccccCc--cccccchhhhhhcccc
Confidence 34566665543 4455666666888876 34567788889999999997653211110 1111224455666665
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
-...+|. +++++.+.+++|+..+....||+.|++-.
T Consensus 127 k~~~~v~--~~~~~~~~i~~A~~~A~~~pGPv~l~iP~ 162 (174)
T d2ez9a2 127 DYNVTAV--NAATLPHVIDEAIRRAYAHQGVAVVQIPV 162 (174)
T ss_dssp SEEEECC--CSTTHHHHHHHHHHHHHHHTSEEEEEEET
T ss_pred ccccccc--cHHHHHHHHHHHHHHHhCCCCCEEEEeCc
Confidence 4556665 66777777777877777778999999853
|
| >d1pvda2 c.36.1.5 (A:2-181) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Pyruvate decarboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.05 E-value=0.014 Score=48.99 Aligned_cols=109 Identities=13% Similarity=0.079 Sum_probs=64.7
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccc---cccccCC---cCHHH
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTP---ISDQFRS---DGAVV 222 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~---~~~~~~~---~~~~~ 222 (380)
.-+|.|.+.+. + ...+++..|=|.++ ...++..|...++|+|+|+-.+....... ....... .++.+
T Consensus 54 ~~~A~gyar~t---~-~~~v~~t~GpG~~N---~~~gl~~A~~~~~P~l~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (180)
T d1pvda2 54 AYAADGYARIK---G-MSCIITTFGVGELS---ALNGIAGSYAEHVGVLHVVGVPSISSQAKQLLLHHTLGNGDFTVFHR 126 (180)
T ss_dssp HHHHHHHHHHH---S-CEEEEEETTHHHHH---HHHHHHHHHHHTCCEEEEEEECCCC--------CCSCSSSCSSHHHH
T ss_pred hHHHHHHhhcc---C-Cceeeeccccccch---hhHHHHHHHhhcccEEEEeccCCcccccccceeeecccccchhHHHH
Confidence 44566766553 2 23455667877665 45668888899999999996544322211 1111111 22445
Q ss_pred HHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 223 KGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 223 ~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
.++.+--...++. +++++.+.+++|+..+...+||+.|++-.
T Consensus 127 ~~~~~tk~~~~v~--~~~~~~~~i~~A~~~a~~~~gPv~i~iP~ 168 (180)
T d1pvda2 127 MSANISETTAMIT--DIATAPAEIDRCIRTTYVTQRPVYLGLPA 168 (180)
T ss_dssp HHGGGCSEEEECC--CTTTHHHHHHHHHHHHHHHTSCEEEEEET
T ss_pred HhhhheeEEEEcC--CHHHHHHHHHHHHHHHhCCCCCEEEECCc
Confidence 6666544455555 55666666666666666668999999853
|
| >d1t9ba2 c.36.1.5 (A:89-263) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Acetohydroxyacid synthase catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.03 E-value=0.018 Score=48.04 Aligned_cols=108 Identities=18% Similarity=0.158 Sum_probs=73.8
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|... ++-.++++..|=|.++ ..-++..|...++|+|+|+-+........ ......|....++.+-
T Consensus 55 ~~~A~gyar~t---g~~~v~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~--~~~q~~d~~~l~~~~t 126 (175)
T d1t9ba2 55 GHMAEGYARAS---GKPGVVLVTSGPGATN---VVTPMADAFADGIPMVVFTGQVPTSAIGT--DAFQEADVVGISRSCT 126 (175)
T ss_dssp HHHHHHHHHHH---SSCEEEEECSTHHHHT---THHHHHHHHHHTCCEEEEEEECCTTTTTS--CCTTCCCHHHHTGGGS
T ss_pred HHHHHHHHHHh---CCceEEEEecCcHHHH---HHHHHHHHHHcCCCEEEEecCCChhhcCC--CccccccHhHhcccce
Confidence 34566666543 4445556666777776 45668889999999999997654322111 1122346777888886
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~-~gP~lIe~~t 266 (380)
-...+++ ++..+.+.+++|+..++.+ .||+.|++-.
T Consensus 127 k~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~ 163 (175)
T d1t9ba2 127 KWNVMVK--SVEELPLRINEAFEIATSGRPGPVLVDLPK 163 (175)
T ss_dssp SEEEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEEH
T ss_pred eeeEecC--CHHHHHHHHHHHHHHHhcCCCccEEEEcCh
Confidence 6677776 8888888899999888876 4799999853
|
| >d2ihta2 c.36.1.5 (A:12-197) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Carboxyethylarginine synthase species: Streptomyces clavuligerus [TaxId: 1901]
Probab=95.85 E-value=0.029 Score=47.27 Aligned_cols=108 Identities=18% Similarity=0.144 Sum_probs=74.9
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCc-ccccccccccCCcCHHHHHhhc
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGW-AISTPISDQFRSDGAVVKGRAY 227 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~-~~~~~~~~~~~~~~~~~~a~a~ 227 (380)
.-+|-|.+... ++-.++++..|=|.++ ..-+|..|...+.|+|+|.-+... .... .......|....++.+
T Consensus 50 ~~~A~gyar~t---g~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~--~~~~q~~d~~~~~~~~ 121 (186)
T d2ihta2 50 GVAADVLARIT---GRPQACWATLGPGMTN---LSTGIATSVLDRSPVIALAAQSESHDIFP--NDTHQCLDSVAIVAPM 121 (186)
T ss_dssp HHHHHHHHHHH---CSCEEEEECTTHHHHH---HHHHHHHHHHHTCCEEEEEEESCGGGCCT--TTSTTCCCHHHHHGGG
T ss_pred HHHHHHHhhcc---CCcceeeccccccccc---hhhhhhHHHHhhccceeeeccCcchhccc--cccccccccccccCCc
Confidence 34555665543 4445556666888775 456677888889999999865432 2111 1122235777888888
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016903 228 GVRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 228 G~~~~~VdG~D~~av~~a~~~a~~~ar~~~-gP~lIe~~t 266 (380)
--...+|. +++++.+.+++|+..+..+. ||+.|++-.
T Consensus 122 tk~~~~v~--~~~~i~~~l~~A~~~a~s~~~GPv~l~iP~ 159 (186)
T d2ihta2 122 SKYAVELQ--RPHEITDLVDSAVNAAMTEPVGPSFISLPV 159 (186)
T ss_dssp SSEEEECC--SGGGHHHHHHHHHHHHTBSSCCCEEEEEEH
T ss_pred eeeccccC--CchhhhhHHHHHHHHHhcCCCeeEEEEeCH
Confidence 87788887 88889999999998888764 799999864
|
| >d1ybha2 c.36.1.5 (A:86-280) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Acetohydroxyacid synthase catalytic subunit species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
Probab=95.83 E-value=0.027 Score=47.90 Aligned_cols=108 Identities=19% Similarity=0.186 Sum_probs=75.2
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+. +.-.++++..|=|.++ ..-++..|..-++|||+|.-+........ ......+.....+.+-
T Consensus 63 ~~mAdgyar~t---g~~gv~~~t~GpG~~N---~~~gl~~A~~~~~Pvlvi~g~~~~~~~~~--~~~q~~d~~~~~~~~t 134 (195)
T d1ybha2 63 VFAAEGYARSS---GKPGICIATSGPGATN---LVSGLADALLDSVPLVAITGQVPRRMIGT--DAFQETPIVEVTRSIT 134 (195)
T ss_dssp HHHHHHHHHHH---SSCEEEEECTTHHHHT---THHHHHHHHHHTCCEEEEEEECCGGGTTT--TCTTCCCHHHHHGGGS
T ss_pred HHHHHHHHHHH---CCCeEEEEecChHHHH---HHHHHHHHHHcCCCEEEEecCCcHHHhcc--Ccccccchhhhhcccc
Confidence 34566776553 4445666667888886 34578889999999999997654332111 1222345667777776
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~-~gP~lIe~~t 266 (380)
-...+|. +++++.+++++|+..+..+ .||+.|++-.
T Consensus 135 k~~~~v~--~~~~~~~~~~~A~~~a~~~r~GPV~l~iP~ 171 (195)
T d1ybha2 135 KHNYLVM--DVEDIPRIIEEAFFLATSGRPGPVLVDVPK 171 (195)
T ss_dssp SEEEECC--CGGGHHHHHHHHHHHHHSSSCCEEEEEEEH
T ss_pred cchhhcc--hHhhcchHHHHHHHHHhcCCCCcEEEECCh
Confidence 6667776 8888999999999888876 4799999854
|
| >d1q6za2 c.36.1.5 (A:2-181) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Benzoylformate decarboxylase species: Pseudomonas putida [TaxId: 303]
Probab=95.12 E-value=0.023 Score=47.75 Aligned_cols=109 Identities=20% Similarity=0.080 Sum_probs=70.6
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.++. .++-.++++..|=|.++ ..-+|..|...+.|+|+|.-+-........ ......|....++.+-
T Consensus 50 ~~mA~gyar~---tgk~~v~~~~~GpG~~n---~~~gl~~A~~~~~Pvlvi~g~~~~~~~g~~-~~~q~~D~~~~~~~~t 122 (180)
T d1q6za2 50 VGIADGYAQA---SRKPAFINLHSAAGTGN---AMGALSNAWNSHSPLIVTAGQQTRAMIGVE-ALLTNVDAANLPRPLV 122 (180)
T ss_dssp HHHHHHHHHH---HTSCEEEEEEHHHHHHH---THHHHHHHHHTTCCEEEEEEECCHHHHTTT-CTTCCTTGGGSSTTSC
T ss_pred HHHHHHHhhh---ccCcceEEecccccccc---ccceeHhhhhcccceeeecccccccccccc-ccchhhheeecccccc
Confidence 3466666654 34455667777878776 346688888999999999976443222111 1111224444555553
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~-~gP~lIe~~t 266 (380)
-...+|. +++++.+.+++|+..++.+ .||+.|++-.
T Consensus 123 K~~~~v~--~~~~i~~~l~~A~~~a~~~~~GPv~l~iP~ 159 (180)
T d1q6za2 123 KWSYEPA--SAAEVPHAMSRAIHMASMAPQGPVYLSVPY 159 (180)
T ss_dssp SCEECCS--SGGGHHHHHHHHHHHHHSSSCCCEEEEEEG
T ss_pred cccccCC--CHHHHHHHHHHHHHHHhcCCCccEEEEcCh
Confidence 3355665 8888999999999888776 4799999874
|
| >d2c42a1 c.36.1.8 (A:2-258) Pyruvate-ferredoxin oxidoreductase, PFOR, domain I {Desulfovibrio africanus [TaxId: 873]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: PFOR Pyr module domain: Pyruvate-ferredoxin oxidoreductase, PFOR, domain I species: Desulfovibrio africanus [TaxId: 873]
Probab=93.68 E-value=0.18 Score=44.52 Aligned_cols=113 Identities=16% Similarity=0.069 Sum_probs=75.3
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
+..++|++++ +.++++++.-.++. ...|.|..|.-.++|+|+++.+.....+. ...+....|+. .++..|
T Consensus 67 ~~~~~Ga~~a------G~r~~t~ts~~Gl~--~m~e~l~~a~~~~~P~V~~v~~r~~~~~~-~~~~~~q~d~~-~~~~~g 136 (257)
T d2c42a1 67 AGAVHGALAA------GALTTTFTASQGLL--LMIPNMYKISGELLPGVFHVTARAIAAHA-LSIFGDHQDIY-AARQTG 136 (257)
T ss_dssp HHHHHHHHHT------TCCEEEEECHHHHH--HHHHHHHHHHHTTCCCEEEEEECCCCSSS-BCCSCCSHHHH-TTTTSS
T ss_pred HHHHHHHHhc------CCCeEEEecchHHH--HHHHHHHHHHhcCCceEEEEEecCCCCCC-CccccchHHHH-HHHhcc
Confidence 6667777765 34455555443443 46788999999999987777665443221 11111111222 355678
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCC
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT 274 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~ 274 (380)
|+.+... ++.+.++-...|.+.+.+.+-|+++-...+|. +|..
T Consensus 137 ~~~l~~~--s~QEa~d~~~~A~~lae~~~~Pv~~~~Dg~~~-sh~~ 179 (257)
T d2c42a1 137 FAMLASS--SVQEAHDMALVAHLAAIESNVPFMHFFDGFRT-SHEI 179 (257)
T ss_dssp CEEEECC--SHHHHHHHHHHHHHHHHHHCCCEEEEEETTTT-TTCE
T ss_pred eEEEecC--CHHHHHHHHHHHHHHHHHhCCCEEEEeccchh-cCCc
Confidence 8887765 99999999999998888888999998888885 4654
|
| >d2r8oa1 c.36.1.6 (A:333-527) Transketolase (TK), Pyr module {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like Pyr module domain: Transketolase (TK), Pyr module species: Escherichia coli [TaxId: 562]
Probab=92.10 E-value=0.43 Score=40.16 Aligned_cols=112 Identities=9% Similarity=-0.047 Sum_probs=66.9
Q ss_pred ccCcccccc-hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCc
Q 016903 140 TVSSTIATQ-LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSD 218 (380)
Q Consensus 140 ~~~g~lG~~-lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~ 218 (380)
...|.-.+. +++|.|+|... .-.+++.++ .+...-.++.+.++..+++++++|+...+.+.........+.+
T Consensus 73 i~~GIaEq~M~~iAaGlA~~g----~~~p~~stf---~~f~~~~~~~ir~~~~~~~~~v~v~~h~g~~~g~dG~THq~iE 145 (195)
T d2r8oa1 73 IHYGVREFGMTAIANGISLHG----GFLPYTSTF---LMFVEYARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVE 145 (195)
T ss_dssp EECCSCHHHHHHHHHHHHHHS----SCEEEEEEE---GGGGGTTHHHHHHHHHTTCCCEEEEECCSGGGCTTCTTTCCSS
T ss_pred eeeeeehhhHHHHHHHHHhhC----CceEEeecc---eeeeccccchhhccccccccceeeeccccccccccchhhHHHH
Confidence 344555543 55677876531 112222222 3333346788999999999888887777655443222233445
Q ss_pred CHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 016903 219 GAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (380)
Q Consensus 219 ~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe 263 (380)
|++-.-.--++.+++-- |..++..+++.|++. .++|+.|-
T Consensus 146 Dia~lR~iPn~~v~~P~--D~~E~~~a~~~a~~~---~~gP~ylR 185 (195)
T d2r8oa1 146 QVASLRVTPNMSTWRPC--DQVESAVAWKYGVER---QDGPTALI 185 (195)
T ss_dssp HHHHHHTSTTCEEECCS--SHHHHHHHHHHHHHC---SSSCEEEE
T ss_pred HHHHHHhhCCcEEEecC--CHHHHHHHHHHHHHc---CCCCEEEE
Confidence 55433333377777644 788888888888763 57898874
|
| >d1r9ja1 c.36.1.6 (A:337-526) Transketolase (TK), Pyr module {Leishmania mexicana mexicana [TaxId: 44270]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like Pyr module domain: Transketolase (TK), Pyr module species: Leishmania mexicana mexicana [TaxId: 44270]
Probab=91.72 E-value=0.6 Score=39.07 Aligned_cols=113 Identities=12% Similarity=0.008 Sum_probs=72.4
Q ss_pred cccCcccccc-hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCC
Q 016903 139 FTVSSTIATQ-LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRS 217 (380)
Q Consensus 139 ~~~~g~lG~~-lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~ 217 (380)
+...|+-.+. +.+|.|.|+.. .-.++++++ ..|. .-.++.+..+...++||++|....++..........+.
T Consensus 66 ~i~~GIaEqnm~~iAaGla~~~----g~~p~~~t~--~~F~-~r~~~~ir~~~~~~~~v~~v~~~~g~~~g~dG~THq~i 138 (190)
T d1r9ja1 66 YIRFGVREHAMCAILNGLDAHD----GIIPFGGTF--LNFI-GYALGAVRLAAISHHRVIYVATHDSIGVGEDGPTHQPV 138 (190)
T ss_dssp EEECCSCHHHHHHHHHHHHHHS----SCEEEEEEE--GGGG-GGGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCS
T ss_pred eeeeccchhhHHHHHHHHHHcC----CcceEEecc--hhhh-ccchHHHHHhcccCCceEEEEecCccccCCCCcchhHH
Confidence 4456777765 67777877542 223333333 2333 33456688888999999999998887655433333445
Q ss_pred cCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 016903 218 DGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (380)
Q Consensus 218 ~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe 263 (380)
.|++-.-.--++.+++-- |..++..+++.|++. .++|+.|-
T Consensus 139 eDla~~R~iPn~~V~~Pa--D~~E~~~al~~a~~~---~~gP~yiR 179 (190)
T d1r9ja1 139 ELVAALRAMPNLQVIRPS--DQTETSGAWAVALSS---IHTPTVLC 179 (190)
T ss_dssp SHHHHHHHSTTCEEECCS--SHHHHHHHHHHHHHC---TTCCEEEE
T ss_pred HHHHHHHhcCCEEEEecC--CHHHHHHHHHHHHHc---CCCCEEEE
Confidence 555543333378777644 888899999888753 67999874
|
| >d1gpua2 c.36.1.6 (A:338-534) Transketolase (TK), Pyr module {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like Pyr module domain: Transketolase (TK), Pyr module species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.61 E-value=0.35 Score=40.80 Aligned_cols=105 Identities=12% Similarity=0.029 Sum_probs=62.5
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
+++|.|+|+. +..-++++. .=..|... ....+..++..++||++|..--++..........+..|++-.-.--|
T Consensus 85 ~~iaaGlA~~----G~~~~p~~~-t~~~f~~~-~~~~~~~~~~~~~~v~~v~t~~g~~~g~dG~THq~ieDia~~r~iPn 158 (197)
T d1gpua2 85 GAIMNGISAF----GANYKPYGG-TFLNFVSY-AAGAVRLSALSGHPVIWVATHDSIGVGEDGPTHQPIETLAHFRSLPN 158 (197)
T ss_dssp HHHHHHHHHH----CTTCEEEEE-EEHHHHGG-GHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSSS
T ss_pred HHHHHHHHHc----CCceeEEEE-eehhhhhh-hHHHHHHhhhcCCceEEEEecccccccccccchhhHHHHHHHhcCCC
Confidence 4566677654 222122221 12333332 34567778888999999998888765433333334455543332236
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~ 264 (380)
+.+++=- |..++..+++.|++. .+||+.|-.
T Consensus 159 ~~v~~Pa--D~~e~~~a~~~a~~~---~~gP~yiRl 189 (197)
T d1gpua2 159 IQVWRPA--DGNEVSAAYKNSLES---KHTPSIIAL 189 (197)
T ss_dssp CEEECCC--SHHHHHHHHHHHHHC---SSCCEEEEC
T ss_pred cEEEecC--CHHHHHHHHHHHHHc---CCCCEEEEe
Confidence 6666533 788888888888763 578998843
|
| >d1ovma2 c.36.1.5 (A:3-180) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Indole-3-pyruvate decarboxylase species: Enterobacter cloacae [TaxId: 550]
Probab=90.95 E-value=0.45 Score=38.96 Aligned_cols=107 Identities=21% Similarity=0.071 Sum_probs=61.0
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCccccccc---c---cccCCcCHHH
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPI---S---DQFRSDGAVV 222 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~---~---~~~~~~~~~~ 222 (380)
.-+|.|.|... +. ..|++..|=|.++ ..-+|..|...++|||+|.-.......... . ......++..
T Consensus 54 ~~~A~gyar~t---~~-~~v~~t~GpG~~n---~~~gl~~A~~~~~Pvl~isg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (178)
T d1ovma2 54 SYAADGYARCK---GF-AALLTTFGVGELS---AMNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFRHFYH 126 (178)
T ss_dssp HHHHHHHHHHH---SC-EEEEEETTHHHHH---THHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCSHHHH
T ss_pred HHHHHHHHhcC---CC-ceEEeeccccccc---cchhhhHHHhcCccEEEEecCCCchhhccccccccccccchhhhccc
Confidence 44566666543 22 2455666777765 346688888899999999875443211110 0 0111234556
Q ss_pred HHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 016903 223 KGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEAL 265 (380)
Q Consensus 223 ~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~ 265 (380)
.++.+--....++ +..++.+..+.+...++ .++|+.|++-
T Consensus 127 ~~~~~tk~~~~v~--~~~~~~~~~~~~~~a~~-~~~Pv~i~iP 166 (178)
T d1ovma2 127 MSEPITVAQAVLT--EQNACYEIDRVLTTMLR-ERRPGYLMLP 166 (178)
T ss_dssp HTGGGCSEEEECC--TTTHHHHHHHHHHHHHH-HTCCEEEEEE
T ss_pred cccccceeEEEeC--cHHHHHHHHHHHHHHHh-CCCCEEEEEC
Confidence 6666655556666 45556555544443333 4689998873
|
| >d1qs0b1 c.36.1.7 (B:2-205) 2-oxoisovalerate dehydrogenase (E1B), Pyr module {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase Pyr module domain: 2-oxoisovalerate dehydrogenase (E1B), Pyr module species: Pseudomonas putida [TaxId: 303]
Probab=87.23 E-value=1.3 Score=37.37 Aligned_cols=102 Identities=15% Similarity=0.040 Sum_probs=59.1
Q ss_pred ccchHHHHHHHHHhhhcCCCCeeEEE--eCccccCcchHHHHHHHHH--------HcCCCEEEEEEcCCccccccccccc
Q 016903 146 ATQLPHAVGAAYALKMDRKDACAVTY--FGDGGTSEGDFHAALNFSA--------VTEAPVIFICRNNGWAISTPISDQF 215 (380)
Q Consensus 146 G~~lp~A~G~A~A~k~~~~~~~vv~~--~GDG~~~eG~~~Eal~~A~--------~~~Lpvi~vv~NN~~~~~~~~~~~~ 215 (380)
...++.|+|+|++- .++|+. ..|=.+. .+-+-.|-++ .++.|+++..-...+...++.+
T Consensus 62 ~~~vG~A~GlA~~G------~rPvve~~~~df~~~--a~dqi~n~~ak~~~~~~~~~~~p~vir~~~g~~~~~g~~H--- 130 (204)
T d1qs0b1 62 SGIVGTAVGMGAYG------LRPVVEIQFADYFYP--ASDQIVSEMARLRYRSAGEFIAPLTLRMPCGGGIYGGQTH--- 130 (204)
T ss_dssp HHHHHHHHHHHHHT------CEEEEECSCGGGCGG--GHHHHHTTTTTHHHHTTTSSCCCCEEEEEECCSSSCCSSS---
T ss_pred eeehhHHHHHhcCC------CcEEEEEEecchhhH--HHHHHHHHHHHhhcccccCcccceEEEcCcccccCccccc---
Confidence 34467788888862 344444 4444442 2334446554 3345777776554333333322
Q ss_pred CCcCHHHHHhhc-CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 016903 216 RSDGAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEAL 265 (380)
Q Consensus 216 ~~~~~~~~a~a~-G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~ 265 (380)
+..+. .....+ |+.++.-. |+.+.+..++.|++ .++|+++--.
T Consensus 131 s~~~~-s~~~~iPgl~Vv~Ps--~~~da~~ll~~a~~----~~~Pvi~~e~ 174 (204)
T d1qs0b1 131 SQSPE-AMFTQVCGLRTVMPS--NPYDAKGLLIASIE----CDDPVIFLEP 174 (204)
T ss_dssp SCCCH-HHHTTSTTCEEECCC--SHHHHHHHHHHHHH----SSSCEEEEEE
T ss_pred ccCHH-HHHhcCCCcEEEeeC--CHHHHHHHHHHHHh----CCCcEEEEee
Confidence 22233 444444 66666544 89999999999986 4889977443
|
| >d1itza2 c.36.1.6 (A:348-539) Transketolase (TK), Pyr module {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like Pyr module domain: Transketolase (TK), Pyr module species: Maize (Zea mays) [TaxId: 4577]
Probab=86.95 E-value=1.8 Score=36.08 Aligned_cols=84 Identities=17% Similarity=0.142 Sum_probs=54.5
Q ss_pred cccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhh
Q 016903 175 GGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAI 254 (380)
Q Consensus 175 G~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar 254 (380)
+.|... ....+..++..++|+++|...-++..........+..|++-.-.--++.++.-- |..++..+++.|+.
T Consensus 101 ~~F~~~-~~~~~~~~~~~~~~v~~v~~~~g~~~g~dG~TH~~ieDia~~r~iPn~~v~~P~--d~~e~~~~~~~a~~--- 174 (192)
T d1itza2 101 FVFTDY-MRGAMRISALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLVSFRAMPNILMLRPA--DGNETAGAYKVAVL--- 174 (192)
T ss_dssp GGGHHH-HHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHSSSSCEEECCC--SHHHHHHHHHHHHH---
T ss_pred hhhhhh-ccchhhhhccccccceEEEecCCcccccCCcccHHHHHHHHHhCcCCceEEecC--CHHHHHHHHHHHHH---
Confidence 344333 445678888899999999988887655433333334455433322366666644 88888888888875
Q ss_pred ccCCcEEEEE
Q 016903 255 GEGRPILIEA 264 (380)
Q Consensus 255 ~~~gP~lIe~ 264 (380)
+.++|+.|-.
T Consensus 175 ~~~gP~yiRl 184 (192)
T d1itza2 175 NRKRPSILAL 184 (192)
T ss_dssp CTTSCEEEEE
T ss_pred cCCCCEEEEE
Confidence 3579998754
|
| >d2ozlb1 c.36.1.7 (B:0-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase Pyr module domain: E1-beta subunit of pyruvate dehydrogenase, Pyr module species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.92 E-value=1.6 Score=36.30 Aligned_cols=101 Identities=18% Similarity=0.119 Sum_probs=60.1
Q ss_pred cchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHH--------cCCCEEEEEEcCCcccccccccccCCc
Q 016903 147 TQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAV--------TEAPVIFICRNNGWAISTPISDQFRSD 218 (380)
Q Consensus 147 ~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~--------~~Lpvi~vv~NN~~~~~~~~~~~~~~~ 218 (380)
..++.|+|+|++ +.+.|+.+==..|..-.+.+-.|.|+. +++|||+.+-.....-..+.+.+
T Consensus 62 ~~~G~a~G~A~~------G~rPive~~~~df~~~a~dqi~n~~ak~~~~~~g~~~~pvvir~~~g~~~g~g~~Hs~---- 131 (192)
T d2ozlb1 62 GFAGIAVGAAMA------GLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGASAGVAAQHSQ---- 131 (192)
T ss_dssp HHHHHHHHHHHT------TCEEEEECSSGGGGGGGHHHHHTTTTTHHHHTTSSCCCCCEEEEECSCCSSCCGGGCC----
T ss_pred HHHHHHHHHHhc------CCceEEEEEeccchhhhHHHHHhhhhhhhhhhCCcccceEEEEeccCCCCCccccccc----
Confidence 446778888764 233343333333433335555565652 55788888876654443333222
Q ss_pred CHHHHHhhc-CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 016903 219 GAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (380)
Q Consensus 219 ~~~~~a~a~-G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe 263 (380)
++......+ |++++.-. ++.+.+..++.|++ .+.|+++-
T Consensus 132 ~~~~~~~~~PGl~Vv~Ps--~p~da~gll~~Ai~----~~~Pvi~~ 171 (192)
T d2ozlb1 132 CFAAWYGHCPGLKVVSPW--NSEDAKGLIKSAIR----DNNPVVVL 171 (192)
T ss_dssp CCHHHHHTSTTCEEECCC--SHHHHHHHHHHHHH----SSSCEEEE
T ss_pred chHHhhccCCceEEEecC--CHHHHHHHHHHHHh----CCCCEEEE
Confidence 223344444 77777655 99999999999996 47899764
|
| >d2bfdb1 c.36.1.7 (B:2-204) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase Pyr module domain: Branched-chain alpha-keto acid dehydrogenase, Pyr module species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.22 E-value=1.4 Score=37.01 Aligned_cols=102 Identities=12% Similarity=0.023 Sum_probs=57.0
Q ss_pred ccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHc--------CCCEEEE-EEcCCcccccccccccC
Q 016903 146 ATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT--------EAPVIFI-CRNNGWAISTPISDQFR 216 (380)
Q Consensus 146 G~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~--------~Lpvi~v-v~NN~~~~~~~~~~~~~ 216 (380)
...++.|+|+|++- .+.|+-+-=+.|..-.+-+-.|.++.+ +.|++++ .--...+...+.+.+
T Consensus 76 ~~~~G~a~G~A~~G------~rPive~~f~dF~~~a~dqi~n~~ak~~~~~~g~~~~~~vv~~~~~g~~~~g~~~HSq-- 147 (203)
T d2bfdb1 76 QGIVGFGIGIAVTG------ATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHGALYHSQ-- 147 (203)
T ss_dssp HHHHHHHHHHHHTT------CCEEEECSSGGGCGGGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEESCCSSCGGGSSC--
T ss_pred ceecchhhhhhhcc------cceEEEEEehhhhhhhHHHHHHHHhhhhcccCCccccccceeeeccccCccccccccc--
Confidence 34466788888752 234433333444333455556666652 4444444 333333332222222
Q ss_pred CcCHHHHHhhc-CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 016903 217 SDGAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (380)
Q Consensus 217 ~~~~~~~a~a~-G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe 263 (380)
++......+ |++++.-. ++.+.+..++.|++ .+.|+++-
T Consensus 148 --~~~~~~~~~PGl~Vv~Ps--~p~Da~gll~~ai~----~~~Pvi~~ 187 (203)
T d2bfdb1 148 --SPEAFFAHCPGIKVVIPR--SPFQAKGLLLSCIE----DKNPCIFF 187 (203)
T ss_dssp --CCHHHHHTSTTCEEECCS--SHHHHHHHHHHHHH----SSSCEEEE
T ss_pred --cHHHHHcCCCCcEEEecC--CHHHHHHHHHHHHh----CCCcEEEE
Confidence 233444444 77777655 99999999999986 47898774
|
| >d1ik6a1 c.36.1.7 (A:1-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase Pyr module domain: E1-beta subunit of pyruvate dehydrogenase, Pyr module species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=80.31 E-value=3.7 Score=33.94 Aligned_cols=103 Identities=17% Similarity=0.039 Sum_probs=55.5
Q ss_pred ccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHH--------cCCCEEEEEEcCCcccccccccccCC
Q 016903 146 ATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAV--------TEAPVIFICRNNGWAISTPISDQFRS 217 (380)
Q Consensus 146 G~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~--------~~Lpvi~vv~NN~~~~~~~~~~~~~~ 217 (380)
...++.|+|+|++ +..-+|...+.|-.+. .+.+-.|-++. ++.|+|+-+-.....-..+ .. +
T Consensus 65 ~~~~G~a~GlA~~----G~rPive~~~~df~~~--a~dQi~n~~ak~~~~s~g~~~~p~vir~~~G~~~~gg~-~H--s- 134 (191)
T d1ik6a1 65 GGILGFAMGMAMA----GLKPVAEIQFVDFIWL--GADELLNHIAKLRYRSGGNYKAPLVVRTPVGSGTRGGL-YH--S- 134 (191)
T ss_dssp HHHHHHHHHHHHT----TCEEEEECCCC----C--CHHHHHHHHHHHHC------CCCCEEEEEECC-------------
T ss_pred hHHHHHHHHHHHh----cCceEEEEEecchhHH--HHHHHHHHHHHHHHhcCCccccccceeecccCCCCCcc-cc--c-
Confidence 3446778887764 2222333346666553 24455665654 3568888776543322222 11 1
Q ss_pred cCHHHHHhhc-CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016903 218 DGAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 218 ~~~~~~a~a~-G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~ 264 (380)
.+.......+ |++++.-. |+.+.+..++.|++ .++|+++.-
T Consensus 135 ~~~~a~~~~iPgl~Vv~Ps--~p~da~~ll~~al~----~~~Pv~~~e 176 (191)
T d1ik6a1 135 NSPEAIFVHTPGLVVVMPS--TPYNAKGLLKAAIR----GDDPVVFLE 176 (191)
T ss_dssp --HHHHHHTCTTCEEECCC--SHHHHHHHHHHHHH----SSSCEEEEE
T ss_pred CCHHHHHHHhhcccEEecC--CHHHHHHHHHHHHh----CCCcEEEEE
Confidence 2234455555 77777655 99999999999986 478997743
|